BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000199
         (1872 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
 pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
          Length = 208

 Score = 31.6 bits (70), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 1748 TGDVDEYLEHEN-----MTNGIDAQNLCLGLSDEGSYSCTLMK 1785
            +GD++ + E++N     +TN +    L L  SDEG+Y C ++K
Sbjct: 44   SGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLK 86


>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
          Length = 696

 Score = 30.8 bits (68), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 14/85 (16%)

Query: 988  EVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ----VVTEEFDRSKQTIS 1043
            E+E++  QR           E +LQ+L S +RD + E   L+    ++ EE+  + +TI+
Sbjct: 352  EIEQDLTQR----------FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401

Query: 1044 ELTEENRALMVALQDKSEESVKLAL 1068
             L  + RAL+ AL++  E + KL+ 
Sbjct: 402  ILFVKTRALVDALKNWIEGNPKLSF 426


>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
          Length = 687

 Score = 30.4 bits (67), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 14/85 (16%)

Query: 988  EVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ----VVTEEFDRSKQTIS 1043
            E+E++  QR           E +LQ+L S +RD + E   L+    ++ EE+  + +TI+
Sbjct: 343  EIEQDLTQR----------FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 392

Query: 1044 ELTEENRALMVALQDKSEESVKLAL 1068
             L  + RAL+ AL++  E + KL+ 
Sbjct: 393  ILFVKTRALVDALKNWIEGNPKLSF 417


>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I
          Length = 695

 Score = 30.4 bits (67), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 14/85 (16%)

Query: 988  EVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ----VVTEEFDRSKQTIS 1043
            E+E++  QR           E +LQ+L S +RD + E   L+    ++ EE+  + +TI+
Sbjct: 351  EIEQDLTQR----------FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 400

Query: 1044 ELTEENRALMVALQDKSEESVKLAL 1068
             L  + RAL+ AL++  E + KL+ 
Sbjct: 401  ILFVKTRALVDALKNWIEGNPKLSF 425


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,421,731
Number of Sequences: 62578
Number of extensions: 1784411
Number of successful extensions: 4974
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 4773
Number of HSP's gapped (non-prelim): 224
length of query: 1872
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1759
effective length of database: 7,902,023
effective search space: 13899658457
effective search space used: 13899658457
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)