Query 000199
Match_columns 1872
No_of_seqs 65 out of 67
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 23:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.8 1.3E-18 2.8E-23 173.9 7.6 135 11-145 2-140 (143)
2 KOG4674 Uncharacterized conser 99.7 1E-07 2.2E-12 126.2 105.8 304 989-1308 792-1126(1822)
3 KOG0161 Myosin class II heavy 99.7 4.3E-08 9.4E-13 131.3 89.6 256 1093-1379 1608-1867(1930)
4 KOG0161 Myosin class II heavy 99.5 2.6E-06 5.7E-11 114.9 100.5 579 993-1638 1243-1887(1930)
5 TIGR00606 rad50 rad50. This fa 99.5 1.1E-06 2.3E-11 116.8 78.4 540 856-1417 358-933 (1311)
6 KOG4674 Uncharacterized conser 99.4 1.7E-05 3.8E-10 106.1 93.5 786 582-1514 656-1541(1822)
7 TIGR00606 rad50 rad50. This fa 99.4 2.4E-05 5.2E-10 104.3 79.6 116 459-575 220-339 (1311)
8 COG1196 Smc Chromosome segrega 99.2 2E-05 4.2E-10 104.1 65.7 794 819-1687 160-1029(1163)
9 TIGR02168 SMC_prok_B chromosom 99.1 0.0002 4.3E-09 92.1 70.7 82 790-871 226-307 (1179)
10 PRK02224 chromosome segregatio 99.1 5.5E-05 1.2E-09 96.5 55.8 57 1243-1303 468-524 (880)
11 PRK02224 chromosome segregatio 98.8 0.0004 8.6E-09 88.9 51.6 48 1233-1280 409-456 (880)
12 PRK03918 chromosome segregatio 98.8 0.00062 1.4E-08 86.8 51.8 9 1316-1324 529-537 (880)
13 TIGR02168 SMC_prok_B chromosom 98.8 0.0025 5.3E-08 82.3 69.9 24 1612-1635 1004-1027(1179)
14 TIGR02169 SMC_prok_A chromosom 98.8 0.0031 6.7E-08 81.9 69.1 19 1288-1306 674-692 (1164)
15 TIGR02169 SMC_prok_A chromosom 98.7 0.0047 1E-07 80.3 72.2 39 1479-1517 956-998 (1164)
16 PRK03918 chromosome segregatio 98.3 0.031 6.8E-07 71.9 54.0 24 1389-1412 559-582 (880)
17 PF01576 Myosin_tail_1: Myosin 98.2 4.6E-07 1E-11 116.0 1.7 742 455-1331 38-846 (859)
18 PF10174 Cast: RIM-binding pro 98.2 0.079 1.7E-06 68.8 57.7 340 966-1325 244-603 (775)
19 PF01576 Myosin_tail_1: Myosin 98.1 5.5E-07 1.2E-11 115.3 1.0 569 804-1439 265-852 (859)
20 COG1196 Smc Chromosome segrega 98.1 0.11 2.5E-06 69.8 70.5 81 698-778 379-459 (1163)
21 PF12128 DUF3584: Protein of u 98.1 0.15 3.1E-06 69.1 58.1 532 917-1493 277-842 (1201)
22 PF10174 Cast: RIM-binding pro 98.1 0.12 2.5E-06 67.3 60.5 144 790-962 11-165 (775)
23 PF12128 DUF3584: Protein of u 98.0 0.2 4.4E-06 67.8 59.1 195 918-1122 349-551 (1201)
24 KOG0996 Structural maintenance 97.8 0.37 8.1E-06 64.2 60.9 157 797-984 191-358 (1293)
25 PF05701 WEMBL: Weak chloropla 97.8 0.21 4.6E-06 62.3 39.2 316 1014-1391 118-440 (522)
26 PF00038 Filament: Intermediat 97.7 0.013 2.7E-07 67.1 25.5 291 1198-1546 5-303 (312)
27 KOG0978 E3 ubiquitin ligase in 97.7 0.28 6.1E-06 63.0 38.3 382 799-1229 230-642 (698)
28 PF05483 SCP-1: Synaptonemal c 97.6 0.45 9.8E-06 60.7 58.4 428 1197-1696 310-764 (786)
29 PF00038 Filament: Intermediat 97.5 0.039 8.5E-07 63.2 26.4 293 745-1133 5-300 (312)
30 PF07888 CALCOCO1: Calcium bin 97.4 0.24 5.1E-06 62.3 32.2 71 1050-1123 293-363 (546)
31 PF05701 WEMBL: Weak chloropla 97.3 0.94 2E-05 56.8 39.7 156 1025-1212 33-190 (522)
32 KOG0978 E3 ubiquitin ligase in 97.3 1.2 2.5E-05 57.8 44.2 344 950-1328 276-644 (698)
33 PF05622 HOOK: HOOK protein; 97.2 0.00025 5.3E-09 89.9 4.5 192 990-1182 188-393 (713)
34 PRK01156 chromosome segregatio 97.2 1.5 3.3E-05 57.5 52.2 38 1133-1170 344-381 (895)
35 PF07888 CALCOCO1: Calcium bin 97.2 0.43 9.3E-06 60.1 31.6 125 995-1122 213-337 (546)
36 PF05622 HOOK: HOOK protein; 97.2 0.00025 5.5E-09 89.8 4.0 472 1006-1532 176-671 (713)
37 KOG0977 Nuclear envelope prote 97.2 0.1 2.2E-06 65.4 25.4 204 1232-1461 172-392 (546)
38 KOG4673 Transcription factor T 97.1 1.9 4E-05 55.4 39.3 445 956-1466 452-956 (961)
39 PF05557 MAD: Mitotic checkpoi 96.9 0.0031 6.7E-08 80.3 10.4 357 709-1121 61-431 (722)
40 KOG0976 Rho/Rac1-interacting s 96.7 3.5 7.6E-05 53.8 43.8 302 1092-1466 95-399 (1265)
41 KOG0977 Nuclear envelope prote 96.6 0.63 1.4E-05 58.7 26.3 278 1198-1511 43-362 (546)
42 COG0419 SbcC ATPase involved i 96.6 4.8 0.0001 53.5 56.7 61 1341-1406 583-643 (908)
43 PF05483 SCP-1: Synaptonemal c 96.5 4.5 9.7E-05 52.4 52.8 367 1034-1430 318-734 (786)
44 KOG4643 Uncharacterized coiled 96.4 6.6 0.00014 52.6 44.0 197 961-1181 129-330 (1195)
45 PHA02562 46 endonuclease subun 96.3 1.7 3.6E-05 53.7 27.5 230 299-566 170-404 (562)
46 KOG0996 Structural maintenance 96.2 9.1 0.0002 52.1 53.3 58 1356-1413 776-833 (1293)
47 COG0419 SbcC ATPase involved i 96.1 8.1 0.00018 51.5 56.1 24 1021-1044 230-253 (908)
48 PF09730 BicD: Microtubule-ass 95.9 1.8 3.9E-05 56.4 25.7 158 1371-1539 19-206 (717)
49 PRK04778 septation ring format 95.9 8.2 0.00018 49.1 37.2 193 1035-1227 107-336 (569)
50 PF05557 MAD: Mitotic checkpoi 95.8 0.018 4E-07 73.5 8.0 66 1238-1307 259-324 (722)
51 PF15070 GOLGA2L5: Putative go 95.5 12 0.00026 48.6 32.2 149 967-1122 87-235 (617)
52 KOG0999 Microtubule-associated 95.5 11 0.00024 48.0 50.3 134 910-1053 32-169 (772)
53 KOG0612 Rho-associated, coiled 95.3 19 0.00042 49.4 45.6 120 954-1090 526-645 (1317)
54 KOG0971 Microtubule-associated 95.0 14 0.00031 49.2 28.4 148 1153-1307 225-387 (1243)
55 KOG0995 Centromere-associated 94.9 16 0.00035 46.8 33.0 195 1202-1430 340-540 (581)
56 PRK01156 chromosome segregatio 94.6 23 0.0005 47.0 60.6 70 968-1045 313-382 (895)
57 PF09730 BicD: Microtubule-ass 94.6 23 0.00049 46.9 45.2 238 1316-1584 370-686 (717)
58 PRK04778 septation ring format 94.6 19 0.00041 46.0 34.3 344 828-1212 109-508 (569)
59 PF06160 EzrA: Septation ring 94.6 19 0.00042 46.0 37.1 336 1036-1391 104-497 (560)
60 KOG4643 Uncharacterized coiled 94.5 26 0.00057 47.4 43.1 207 1156-1380 233-458 (1195)
61 KOG0976 Rho/Rac1-interacting s 94.3 26 0.00056 46.4 42.5 214 1234-1493 282-502 (1265)
62 PHA02562 46 endonuclease subun 94.3 5.9 0.00013 49.1 22.6 106 812-931 215-323 (562)
63 PRK04863 mukB cell division pr 93.6 49 0.0011 47.1 67.6 188 522-735 347-539 (1486)
64 PRK11637 AmiB activator; Provi 93.6 6.1 0.00013 48.3 20.6 64 1385-1448 172-235 (428)
65 PF14662 CCDC155: Coiled-coil 93.5 9.3 0.0002 43.4 20.1 97 1043-1150 18-114 (193)
66 KOG0946 ER-Golgi vesicle-tethe 92.8 6 0.00013 52.0 19.5 91 1195-1285 679-772 (970)
67 PRK04863 mukB cell division pr 92.6 66 0.0014 45.9 57.5 196 1092-1296 452-678 (1486)
68 KOG4673 Transcription factor T 91.1 64 0.0014 42.6 40.4 272 975-1278 289-565 (961)
69 PRK11637 AmiB activator; Provi 91.1 41 0.00089 41.4 23.4 19 1257-1275 198-216 (428)
70 PF13514 AAA_27: AAA domain 91.0 80 0.0017 43.6 60.6 102 841-953 739-840 (1111)
71 KOG0612 Rho-associated, coiled 90.4 94 0.002 43.4 46.9 77 1243-1322 700-780 (1317)
72 PF10473 CENP-F_leu_zip: Leuci 90.4 22 0.00047 38.8 17.8 123 463-592 3-138 (140)
73 KOG0980 Actin-binding protein 89.7 59 0.0013 43.9 23.7 150 459-621 462-615 (980)
74 PF09726 Macoilin: Transmembra 89.4 81 0.0018 41.9 25.0 202 826-1130 455-656 (697)
75 KOG4593 Mitotic checkpoint pro 89.2 91 0.002 41.4 42.7 279 1245-1557 287-586 (716)
76 PF09789 DUF2353: Uncharacteri 88.9 65 0.0014 39.3 23.1 266 1014-1305 4-317 (319)
77 KOG0963 Transcription factor/C 88.7 92 0.002 40.8 28.7 292 1197-1525 29-362 (629)
78 PF09726 Macoilin: Transmembra 88.3 76 0.0017 42.2 23.8 63 968-1030 419-481 (697)
79 KOG0994 Extracellular matrix g 88.2 1.3E+02 0.0028 42.0 44.5 112 967-1087 1171-1286(1758)
80 PF08317 Spc7: Spc7 kinetochor 87.7 15 0.00033 43.8 15.9 171 1130-1303 114-291 (325)
81 PF00261 Tropomyosin: Tropomyo 87.5 53 0.0012 37.7 19.4 225 1028-1269 3-234 (237)
82 PF08317 Spc7: Spc7 kinetochor 87.3 27 0.00059 41.7 17.7 133 459-595 152-291 (325)
83 PF04849 HAP1_N: HAP1 N-termin 87.1 34 0.00073 41.5 18.0 27 1069-1095 161-187 (306)
84 TIGR03185 DNA_S_dndD DNA sulfu 87.0 1.1E+02 0.0024 39.8 24.5 45 1590-1634 372-417 (650)
85 cd08389 C2A_Synaptotagmin-14_1 86.9 1.2 2.6E-05 45.4 5.6 94 24-125 25-123 (124)
86 PF09789 DUF2353: Uncharacteri 86.8 44 0.00095 40.7 18.9 193 465-698 11-228 (319)
87 PF14662 CCDC155: Coiled-coil 85.8 73 0.0016 36.6 20.4 53 1063-1115 3-55 (193)
88 KOG0971 Microtubule-associated 85.6 1.6E+02 0.0035 40.3 26.1 92 511-606 327-422 (1243)
89 smart00787 Spc7 Spc7 kinetocho 85.5 69 0.0015 38.8 19.7 178 906-1089 65-260 (312)
90 TIGR01005 eps_transp_fam exopo 85.5 30 0.00064 45.3 18.1 49 1331-1379 174-222 (754)
91 KOG0995 Centromere-associated 85.2 1.4E+02 0.0029 39.1 31.2 196 766-1013 229-425 (581)
92 PF09787 Golgin_A5: Golgin sub 84.9 1.1E+02 0.0023 39.1 21.9 158 991-1148 176-354 (511)
93 PRK09039 hypothetical protein; 84.7 35 0.00076 41.4 17.0 124 457-589 54-199 (343)
94 PF05667 DUF812: Protein of un 84.2 1.4E+02 0.003 39.2 22.7 144 1374-1541 428-590 (594)
95 KOG0946 ER-Golgi vesicle-tethe 84.1 1.8E+02 0.0038 39.6 24.9 72 1425-1503 848-919 (970)
96 PF10473 CENP-F_leu_zip: Leuci 83.3 45 0.00098 36.4 15.4 116 1004-1122 5-120 (140)
97 KOG0250 DNA repair protein RAD 83.0 2.2E+02 0.0047 39.8 24.9 128 1182-1312 297-425 (1074)
98 PF15070 GOLGA2L5: Putative go 82.7 1.8E+02 0.0038 38.5 37.7 96 987-1082 79-174 (617)
99 KOG0994 Extracellular matrix g 82.5 2.3E+02 0.0051 39.8 41.2 241 937-1187 1196-1503(1758)
100 TIGR03007 pepcterm_ChnLen poly 82.5 41 0.00089 41.7 16.8 94 1341-1440 165-273 (498)
101 PF13851 GAS: Growth-arrest sp 82.4 17 0.00036 41.1 12.4 164 709-881 27-200 (201)
102 PF12718 Tropomyosin_1: Tropom 80.8 27 0.00058 37.8 12.6 111 1245-1369 30-140 (143)
103 KOG4593 Mitotic checkpoint pro 80.8 2.1E+02 0.0046 38.2 46.6 524 751-1360 53-616 (716)
104 PF09787 Golgin_A5: Golgin sub 79.5 1.9E+02 0.0042 37.0 25.6 29 1259-1287 387-415 (511)
105 TIGR00634 recN DNA repair prot 78.8 1.1E+02 0.0024 39.2 19.2 84 1222-1305 280-363 (563)
106 PF12718 Tropomyosin_1: Tropom 78.5 99 0.0021 33.6 16.0 130 1257-1400 7-136 (143)
107 PF11559 ADIP: Afadin- and alp 78.3 40 0.00086 36.0 12.9 112 1344-1455 38-149 (151)
108 PRK06568 F0F1 ATP synthase sub 76.8 95 0.0021 34.4 15.5 109 458-603 30-138 (154)
109 PF15397 DUF4618: Domain of un 76.8 1.7E+02 0.0038 35.0 19.7 33 1038-1070 11-43 (258)
110 PF05010 TACC: Transforming ac 76.1 1.6E+02 0.0034 34.2 18.4 83 1009-1094 23-109 (207)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.1 45 0.00097 35.3 12.4 114 1392-1511 2-118 (132)
112 PF15254 CCDC14: Coiled-coil d 76.0 1.8E+02 0.004 39.2 19.8 119 1175-1307 429-555 (861)
113 PF07426 Dynactin_p22: Dynacti 75.9 23 0.0005 39.5 10.8 152 707-881 3-162 (174)
114 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.5 94 0.002 33.0 14.3 104 460-563 7-113 (132)
115 PRK09039 hypothetical protein; 74.5 1.4E+02 0.0031 36.4 17.6 140 1335-1486 35-184 (343)
116 KOG0962 DNA repair protein RAD 74.0 4.2E+02 0.009 38.0 70.4 109 459-568 219-331 (1294)
117 KOG1853 LIS1-interacting prote 73.9 35 0.00076 40.4 11.8 129 1397-1525 49-191 (333)
118 KOG0980 Actin-binding protein 70.9 4.1E+02 0.009 36.6 24.5 91 1360-1450 440-537 (980)
119 PF05911 DUF869: Plant protein 70.2 4.1E+02 0.0088 36.3 45.3 41 1152-1192 673-713 (769)
120 cd04043 C2_Munc13_fungal C2 do 69.7 17 0.00037 36.5 7.4 108 22-141 8-122 (126)
121 KOG0933 Structural maintenance 69.0 4.8E+02 0.01 36.6 50.3 124 1331-1476 735-859 (1174)
122 cd04052 C2B_Tricalbin-like C2 68.6 4.3 9.2E-05 40.5 2.9 52 88-140 57-109 (111)
123 PF15066 CAGE1: Cancer-associa 68.2 2E+02 0.0043 37.0 16.9 143 1008-1150 330-504 (527)
124 PF00261 Tropomyosin: Tropomyo 68.0 2.3E+02 0.0051 32.7 21.7 215 1066-1312 6-221 (237)
125 PRK11281 hypothetical protein; 68.0 5.2E+02 0.011 36.7 28.5 136 1384-1519 283-456 (1113)
126 PF14197 Cep57_CLD_2: Centroso 67.9 25 0.00055 34.2 7.7 64 309-372 4-67 (69)
127 cd08682 C2_Rab11-FIP_classI C2 67.4 5.6 0.00012 40.2 3.5 109 23-138 7-126 (126)
128 TIGR03185 DNA_S_dndD DNA sulfu 67.3 4E+02 0.0086 35.0 30.2 43 459-501 205-247 (650)
129 PF13851 GAS: Growth-arrest sp 66.4 2.4E+02 0.0052 32.2 16.7 136 1284-1440 5-140 (201)
130 PF07106 TBPIP: Tat binding pr 66.1 12 0.00025 40.6 5.8 77 305-386 74-150 (169)
131 cd08373 C2A_Ferlin C2 domain f 65.8 9.2 0.0002 38.7 4.7 51 96-147 70-123 (127)
132 PF06818 Fez1: Fez1; InterPro 64.7 85 0.0019 36.3 12.2 63 1285-1350 7-69 (202)
133 PF08614 ATG16: Autophagy prot 64.3 35 0.00076 38.0 9.1 122 997-1135 69-190 (194)
134 PF14915 CCDC144C: CCDC144C pr 63.5 3.6E+02 0.0077 33.2 25.9 282 826-1147 1-294 (305)
135 PF15397 DUF4618: Domain of un 63.4 3.3E+02 0.0072 32.8 18.8 203 1116-1403 19-224 (258)
136 PF07798 DUF1640: Protein of u 62.9 55 0.0012 36.2 10.2 79 1443-1521 20-103 (177)
137 PRK10869 recombination and rep 62.7 2.6E+02 0.0056 36.3 17.3 64 1242-1305 295-358 (553)
138 KOG0804 Cytoplasmic Zn-finger 61.6 80 0.0017 40.1 12.1 12 1456-1467 438-449 (493)
139 cd08376 C2B_MCTP_PRT C2 domain 61.0 13 0.00028 36.8 4.6 43 94-139 72-114 (116)
140 PF05010 TACC: Transforming ac 60.7 3.2E+02 0.007 31.8 18.5 150 1264-1457 23-172 (207)
141 PRK11281 hypothetical protein; 60.5 6.9E+02 0.015 35.5 28.1 73 1178-1250 239-320 (1113)
142 COG1340 Uncharacterized archae 60.5 4E+02 0.0086 32.7 22.4 241 1161-1405 8-254 (294)
143 cd08391 C2A_C2C_Synaptotagmin_ 60.1 13 0.00029 36.6 4.5 40 97-138 81-120 (121)
144 PF10212 TTKRSYEDQ: Predicted 59.6 73 0.0016 41.1 11.6 103 1338-1468 414-516 (518)
145 COG3883 Uncharacterized protei 58.9 4E+02 0.0087 32.3 17.4 53 1442-1494 165-217 (265)
146 PRK10884 SH3 domain-containing 58.8 39 0.00085 38.7 8.4 75 299-373 89-167 (206)
147 TIGR01005 eps_transp_fam exopo 58.1 5E+02 0.011 34.5 19.1 91 461-551 235-344 (754)
148 COG1579 Zn-ribbon protein, pos 57.9 3.9E+02 0.0085 31.8 16.7 45 1442-1486 92-136 (239)
149 PRK10929 putative mechanosensi 57.1 7.8E+02 0.017 35.1 33.3 356 1097-1516 24-422 (1109)
150 PF10186 Atg14: UV radiation r 56.6 2.5E+02 0.0053 32.2 14.3 55 1003-1057 21-80 (302)
151 PF11559 ADIP: Afadin- and alp 56.1 2.9E+02 0.0062 29.7 16.2 108 456-574 31-138 (151)
152 KOG2008 BTK-associated SH3-dom 55.9 4.4E+02 0.0095 32.7 16.3 144 1291-1461 48-205 (426)
153 cd04044 C2A_Tricalbin-like C2 55.7 18 0.00039 35.8 4.7 77 56-140 45-123 (124)
154 PF05667 DUF812: Protein of un 55.6 6.3E+02 0.014 33.5 25.5 64 1043-1106 422-485 (594)
155 PF04156 IncA: IncA protein; 55.5 2E+02 0.0044 31.5 12.9 74 1340-1413 77-150 (191)
156 KOG0999 Microtubule-associated 55.5 6.3E+02 0.014 33.5 34.2 364 1062-1457 37-453 (772)
157 PF04012 PspA_IM30: PspA/IM30 55.1 3.6E+02 0.0077 30.5 15.0 97 1390-1486 34-138 (221)
158 cd04033 C2_NEDD4_NEDD4L C2 dom 54.8 20 0.00044 36.3 4.9 45 96-140 80-133 (133)
159 KOG0979 Structural maintenance 54.1 8.3E+02 0.018 34.5 23.7 193 1028-1249 620-816 (1072)
160 PF10267 Tmemb_cc2: Predicted 53.6 1E+02 0.0022 38.7 11.3 76 309-391 211-286 (395)
161 cd08388 C2A_Synaptotagmin-4-11 53.3 15 0.00033 37.8 3.8 32 94-125 95-127 (128)
162 PF02183 HALZ: Homeobox associ 51.1 32 0.00068 31.2 4.9 42 488-540 2-43 (45)
163 KOG4687 Uncharacterized coiled 50.8 3.9E+02 0.0084 32.6 14.6 140 465-609 32-189 (389)
164 PRK11546 zraP zinc resistance 50.8 78 0.0017 34.9 8.7 92 1017-1117 3-110 (143)
165 PF13949 ALIX_LYPXL_bnd: ALIX 49.2 4.8E+02 0.01 30.3 20.7 233 792-1033 25-286 (296)
166 PF09304 Cortex-I_coil: Cortex 49.0 1.2E+02 0.0026 32.2 9.3 72 1203-1274 4-75 (107)
167 COG1579 Zn-ribbon protein, pos 48.9 5.4E+02 0.012 30.8 15.6 51 1125-1182 83-133 (239)
168 KOG0979 Structural maintenance 48.9 9.9E+02 0.021 33.8 20.7 113 1338-1454 774-899 (1072)
169 PF03999 MAP65_ASE1: Microtubu 48.1 6 0.00013 50.8 0.0 185 835-1039 81-277 (619)
170 KOG1937 Uncharacterized conser 48.1 7.5E+02 0.016 32.2 19.5 59 1241-1305 453-512 (521)
171 PF11932 DUF3450: Protein of u 47.9 2.6E+02 0.0055 32.5 12.7 29 522-550 93-122 (251)
172 PF10212 TTKRSYEDQ: Predicted 47.7 3.1E+02 0.0068 35.7 14.3 352 704-1100 78-494 (518)
173 PF15066 CAGE1: Cancer-associa 47.5 7.7E+02 0.017 32.2 19.4 175 1235-1424 296-473 (527)
174 PF09728 Taxilin: Myosin-like 46.0 6.4E+02 0.014 30.8 23.8 253 1096-1364 8-306 (309)
175 PF12325 TMF_TATA_bd: TATA ele 46.0 50 0.0011 35.2 6.2 81 330-410 29-111 (120)
176 cd08521 C2A_SLP C2 domain firs 45.8 28 0.00061 34.7 4.2 29 84-112 82-112 (123)
177 PF00769 ERM: Ezrin/radixin/mo 45.5 4.2E+02 0.0091 31.2 14.0 31 474-504 2-32 (246)
178 KOG1029 Endocytic adaptor prot 45.3 1E+03 0.022 32.9 23.3 257 1114-1420 328-598 (1118)
179 PF06008 Laminin_I: Laminin Do 44.7 5.7E+02 0.012 29.9 20.7 122 1061-1196 17-143 (264)
180 KOG2129 Uncharacterized conser 44.6 3.4E+02 0.0074 34.7 13.5 241 256-513 3-307 (552)
181 cd04014 C2_PKC_epsilon C2 doma 44.6 25 0.00053 36.0 3.7 55 84-141 73-130 (132)
182 KOG4460 Nuclear pore complex, 44.4 2.3E+02 0.0051 37.0 12.4 136 458-597 590-726 (741)
183 PF04156 IncA: IncA protein; 44.3 3.4E+02 0.0075 29.8 12.5 41 457-497 82-122 (191)
184 cd08393 C2A_SLP-1_2 C2 domain 44.2 47 0.001 34.1 5.7 42 82-124 81-124 (125)
185 cd08375 C2_Intersectin C2 doma 43.4 48 0.001 34.8 5.7 106 22-137 22-133 (136)
186 cd08690 C2_Freud-1 C2 domain f 43.1 52 0.0011 36.1 6.0 61 84-145 77-142 (155)
187 PRK10884 SH3 domain-containing 43.0 97 0.0021 35.7 8.3 28 993-1020 84-111 (206)
188 KOG0239 Kinesin (KAR3 subfamil 42.8 4.4E+02 0.0096 35.4 15.1 93 1289-1386 221-313 (670)
189 smart00787 Spc7 Spc7 kinetocho 42.8 7.2E+02 0.016 30.5 18.2 133 462-595 143-286 (312)
190 KOG0250 DNA repair protein RAD 42.6 1.2E+03 0.027 33.1 51.7 53 857-909 153-210 (1074)
191 cd04042 C2A_MCTP_PRT C2 domain 42.2 33 0.00072 34.5 4.2 45 94-139 72-119 (121)
192 cd08680 C2_Kibra C2 domain fou 42.1 17 0.00037 37.9 2.2 72 37-115 41-115 (124)
193 KOG1853 LIS1-interacting prote 42.1 7.2E+02 0.016 30.3 15.1 123 1073-1212 25-148 (333)
194 cd08685 C2_RGS-like C2 domain 41.9 20 0.00043 36.8 2.6 69 37-113 38-109 (119)
195 PF08614 ATG16: Autophagy prot 41.5 1.8E+02 0.0039 32.6 10.0 89 459-547 91-182 (194)
196 TIGR03752 conj_TIGR03752 integ 41.3 78 0.0017 40.4 7.9 75 1388-1462 61-139 (472)
197 PRK10361 DNA recombination pro 41.1 7.1E+02 0.015 32.4 15.9 67 917-983 56-122 (475)
198 PF04111 APG6: Autophagy prote 40.8 1.3E+02 0.0029 36.3 9.4 43 1043-1085 53-95 (314)
199 PF14197 Cep57_CLD_2: Centroso 40.6 68 0.0015 31.4 5.7 49 1033-1081 19-67 (69)
200 KOG4360 Uncharacterized coiled 40.6 2.8E+02 0.0061 36.1 12.2 93 1070-1162 161-264 (596)
201 cd04035 C2A_Rabphilin_Doc2 C2 40.3 43 0.00094 33.7 4.6 23 92-114 92-114 (123)
202 PF09304 Cortex-I_coil: Cortex 40.2 2.8E+02 0.006 29.7 10.3 89 1363-1451 14-103 (107)
203 TIGR03017 EpsF chain length de 40.2 8E+02 0.017 30.3 17.7 26 1342-1367 176-201 (444)
204 KOG1899 LAR transmembrane tyro 40.2 3.1E+02 0.0068 36.5 12.6 145 1245-1419 155-310 (861)
205 KOG1899 LAR transmembrane tyro 39.9 5.2E+02 0.011 34.7 14.4 152 1176-1358 135-309 (861)
206 cd04051 C2_SRC2_like C2 domain 39.8 24 0.00053 35.5 2.8 73 58-134 44-124 (125)
207 PF09325 Vps5: Vps5 C terminal 39.3 4.4E+02 0.0095 29.5 12.6 108 837-951 23-151 (236)
208 PF04849 HAP1_N: HAP1 N-termin 38.6 8.6E+02 0.019 30.2 21.5 89 1162-1257 216-304 (306)
209 PF10481 CENP-F_N: Cenp-F N-te 38.6 2.7E+02 0.0058 34.0 11.0 47 452-499 8-54 (307)
210 TIGR03007 pepcterm_ChnLen poly 38.2 9.2E+02 0.02 30.4 17.4 43 1038-1080 252-294 (498)
211 cd04020 C2B_SLP_1-2-3-4 C2 dom 38.0 74 0.0016 34.5 6.2 86 22-113 34-126 (162)
212 PLN03188 kinesin-12 family pro 37.4 1.6E+03 0.034 32.8 23.3 55 1145-1199 884-938 (1320)
213 PF07111 HCR: Alpha helical co 37.3 1.3E+03 0.027 31.7 45.9 128 1123-1256 206-351 (739)
214 PF03954 Lectin_N: Hepatic lec 36.9 39 0.00085 37.0 3.9 69 1232-1302 58-130 (138)
215 cd04040 C2D_Tricalbin-like C2 36.8 33 0.00072 33.9 3.2 33 95-128 73-105 (115)
216 PF15619 Lebercilin: Ciliary p 35.9 7.3E+02 0.016 28.6 16.5 72 999-1070 16-105 (194)
217 cd08681 C2_fungal_Inn1p-like C 35.5 34 0.00073 34.0 3.0 70 60-138 46-117 (118)
218 PF06005 DUF904: Protein of un 35.4 3.1E+02 0.0066 27.3 9.2 44 459-502 7-50 (72)
219 COG1842 PspA Phage shock prote 35.4 2.5E+02 0.0054 32.9 10.1 100 1393-1492 38-138 (225)
220 COG5185 HEC1 Protein involved 35.3 1.2E+03 0.025 30.8 27.0 151 1011-1176 273-424 (622)
221 cd04031 C2A_RIM1alpha C2 domai 34.8 50 0.0011 33.0 4.1 17 94-110 96-112 (125)
222 PF04111 APG6: Autophagy prote 34.8 5E+02 0.011 31.6 12.9 41 462-502 42-82 (314)
223 COG4942 Membrane-bound metallo 34.7 1.1E+03 0.024 30.4 21.8 73 1036-1112 38-110 (420)
224 cd04029 C2A_SLP-4_5 C2 domain 34.0 31 0.00066 35.6 2.5 79 37-125 43-125 (125)
225 KOG4302 Microtubule-associated 33.8 1.4E+03 0.03 31.1 18.6 149 1194-1348 54-214 (660)
226 PLN03229 acetyl-coenzyme A car 33.6 1.4E+03 0.03 31.6 17.2 72 528-599 647-731 (762)
227 PLN02939 transferase, transfer 33.2 1.5E+03 0.033 32.0 18.0 211 1250-1461 156-398 (977)
228 PF10186 Atg14: UV radiation r 32.9 8.1E+02 0.018 28.2 16.7 31 461-491 18-48 (302)
229 PF08581 Tup_N: Tup N-terminal 32.7 1.5E+02 0.0033 29.8 6.9 64 1283-1356 13-76 (79)
230 COG1730 GIM5 Predicted prefold 32.5 1.8E+02 0.0039 32.2 7.9 47 1003-1049 7-53 (145)
231 PF08312 cwf21: cwf21 domain; 32.3 1.1E+02 0.0025 28.0 5.4 39 1469-1517 6-44 (46)
232 cd08400 C2_Ras_p21A1 C2 domain 31.7 1.1E+02 0.0023 31.6 5.9 106 22-140 11-123 (126)
233 cd04024 C2A_Synaptotagmin-like 31.5 41 0.00089 33.6 2.9 32 96-127 77-110 (128)
234 cd04030 C2C_KIAA1228 C2 domain 31.5 88 0.0019 31.5 5.2 28 96-124 99-126 (127)
235 COG0497 RecN ATPase involved i 30.9 1.4E+03 0.029 30.6 16.3 191 1077-1304 159-358 (557)
236 PF10211 Ax_dynein_light: Axon 30.9 2.6E+02 0.0057 31.7 9.2 50 311-364 34-85 (189)
237 cd04022 C2A_MCTP_PRT_plant C2 30.6 48 0.001 33.7 3.3 42 97-139 79-125 (127)
238 cd08401 C2A_RasA2_RasA3 C2 dom 30.5 45 0.00099 34.2 3.1 52 85-138 62-120 (121)
239 COG3074 Uncharacterized protei 30.4 1.9E+02 0.0041 29.1 6.9 44 343-391 29-74 (79)
240 cd04015 C2_plant_PLD C2 domain 30.3 57 0.0012 35.2 3.9 42 97-139 111-157 (158)
241 PF06476 DUF1090: Protein of u 30.1 1.2E+02 0.0026 32.3 6.0 69 1569-1637 20-92 (115)
242 PF10168 Nup88: Nuclear pore c 29.9 1.4E+03 0.029 31.3 16.6 77 1002-1088 579-659 (717)
243 TIGR02338 gimC_beta prefoldin, 29.5 3.4E+02 0.0073 28.1 9.0 97 1003-1101 11-107 (110)
244 cd04019 C2C_MCTP_PRT_plant C2 29.4 72 0.0016 34.3 4.4 48 94-141 73-133 (150)
245 cd04026 C2_PKC_alpha_gamma C2 29.3 43 0.00093 34.1 2.6 103 22-134 20-129 (131)
246 KOG0933 Structural maintenance 29.0 1.9E+03 0.042 31.3 47.8 364 865-1282 124-504 (1174)
247 PF10168 Nup88: Nuclear pore c 28.9 9E+02 0.019 32.9 14.7 91 459-553 568-658 (717)
248 PF04645 DUF603: Protein of un 28.8 1.1E+02 0.0023 34.9 5.6 43 325-369 113-155 (181)
249 PF11932 DUF3450: Protein of u 28.5 4.4E+02 0.0096 30.6 10.7 68 1065-1132 46-116 (251)
250 cd04036 C2_cPLA2 C2 domain pre 28.2 66 0.0014 32.3 3.7 39 97-137 77-115 (119)
251 PRK13169 DNA replication intia 28.2 58 0.0013 34.4 3.4 38 998-1052 4-41 (110)
252 PF06156 DUF972: Protein of un 27.8 59 0.0013 34.1 3.3 38 998-1052 4-41 (107)
253 KOG4403 Cell surface glycoprot 27.8 8.1E+02 0.018 31.7 13.1 152 1242-1418 258-422 (575)
254 PF06785 UPF0242: Uncharacteri 27.6 6E+02 0.013 31.9 11.7 80 1007-1086 97-187 (401)
255 cd08390 C2A_Synaptotagmin-15-1 27.4 1.2E+02 0.0025 30.5 5.3 31 94-125 92-122 (123)
256 PF13870 DUF4201: Domain of un 27.4 8.8E+02 0.019 26.8 14.0 77 1230-1306 92-170 (177)
257 PF06818 Fez1: Fez1; InterPro 27.4 1.1E+03 0.023 27.9 13.5 79 1221-1306 16-98 (202)
258 PF04871 Uso1_p115_C: Uso1 / p 27.1 6.8E+02 0.015 27.3 11.1 41 1454-1494 78-118 (136)
259 PF04124 Dor1: Dor1-like famil 26.7 1.2E+03 0.027 28.3 17.2 157 1028-1207 16-174 (338)
260 PF12325 TMF_TATA_bd: TATA ele 26.4 3.7E+02 0.008 29.0 8.8 69 1014-1082 42-117 (120)
261 cd04048 C2A_Copine C2 domain f 26.2 1.3E+02 0.0028 30.4 5.3 97 18-124 3-112 (120)
262 PF08581 Tup_N: Tup N-terminal 26.1 5.1E+02 0.011 26.3 9.2 40 459-498 7-46 (79)
263 PRK10698 phage shock protein P 25.9 5.8E+02 0.013 29.7 11.0 77 1390-1466 35-119 (222)
264 smart00338 BRLZ basic region l 25.9 1.7E+02 0.0036 27.5 5.6 40 462-501 25-64 (65)
265 COG4942 Membrane-bound metallo 25.9 1.5E+03 0.033 29.2 21.2 119 1096-1214 112-244 (420)
266 PF05082 Rop-like: Rop-like; 25.8 1.7E+02 0.0037 28.9 5.7 63 310-372 2-64 (66)
267 PRK09841 cryptic autophosphory 25.8 1.1E+03 0.024 31.6 14.9 51 1331-1381 247-297 (726)
268 PF03999 MAP65_ASE1: Microtubu 25.3 1.5E+02 0.0033 38.6 7.0 291 967-1277 105-408 (619)
269 KOG3156 Uncharacterized membra 25.0 2.8E+02 0.006 32.7 8.1 80 1446-1525 66-151 (220)
270 cd08386 C2A_Synaptotagmin-7 C2 24.8 90 0.002 31.4 4.0 29 95-124 95-123 (125)
271 KOG1937 Uncharacterized conser 24.7 1.7E+03 0.037 29.3 27.0 72 1383-1458 386-457 (521)
272 cd08691 C2_NEDL1-like C2 domai 24.6 1.7E+02 0.0038 31.3 6.2 28 98-125 91-120 (137)
273 PF00015 MCPsignal: Methyl-acc 24.5 9.2E+02 0.02 26.1 18.2 94 933-1027 7-100 (213)
274 cd08387 C2A_Synaptotagmin-8 C2 24.5 50 0.0011 33.3 2.1 42 83-125 80-123 (124)
275 KOG2991 Splicing regulator [RN 24.5 1.4E+03 0.03 28.1 19.6 74 639-729 236-312 (330)
276 PF14992 TMCO5: TMCO5 family 24.4 8.3E+02 0.018 30.0 12.1 142 957-1104 22-185 (280)
277 TIGR01000 bacteriocin_acc bact 24.3 1.4E+03 0.029 28.9 14.5 96 947-1044 166-261 (457)
278 PF10234 Cluap1: Clusterin-ass 24.2 7.8E+02 0.017 29.9 11.8 91 459-567 172-262 (267)
279 TIGR01843 type_I_hlyD type I s 24.1 1.3E+03 0.028 27.7 17.5 126 459-587 140-271 (423)
280 PF07798 DUF1640: Protein of u 24.0 1E+03 0.023 26.5 14.6 29 1252-1280 39-67 (177)
281 KOG2264 Exostosin EXT1L [Signa 23.8 1.5E+02 0.0032 38.7 6.2 51 457-507 94-144 (907)
282 KOG0249 LAR-interacting protei 23.7 1.4E+03 0.03 31.5 14.5 114 983-1102 134-257 (916)
283 PF14992 TMCO5: TMCO5 family 23.6 2.9E+02 0.0063 33.6 8.2 31 767-797 6-36 (280)
284 PRK00409 recombination and DNA 23.5 1E+03 0.023 32.4 14.1 40 65-106 150-189 (782)
285 PF03962 Mnd1: Mnd1 family; I 23.5 1.9E+02 0.0042 32.7 6.6 78 309-391 68-145 (188)
286 PF06005 DUF904: Protein of un 23.2 2.4E+02 0.0053 28.0 6.3 23 350-372 30-52 (72)
287 PF09755 DUF2046: Uncharacteri 23.1 1.5E+03 0.033 28.2 25.5 242 1106-1404 23-286 (310)
288 KOG0993 Rab5 GTPase effector R 23.0 1.7E+03 0.038 28.8 19.1 122 1177-1301 353-496 (542)
289 KOG4809 Rab6 GTPase-interactin 22.8 2E+03 0.043 29.3 22.2 233 1251-1517 332-599 (654)
290 PRK03947 prefoldin subunit alp 22.8 2.8E+02 0.0061 29.4 7.2 44 1004-1047 8-51 (140)
291 PF09738 DUF2051: Double stran 22.7 5.3E+02 0.011 31.7 10.2 87 301-392 82-175 (302)
292 COG3096 MukB Uncharacterized p 22.4 2.2E+03 0.048 29.9 18.5 188 971-1192 890-1092(1480)
293 KOG0992 Uncharacterized conser 22.3 1.9E+03 0.042 29.1 30.2 195 983-1186 48-258 (613)
294 cd08392 C2A_SLP-3 C2 domain fi 22.2 52 0.0011 34.3 1.8 68 37-112 43-113 (128)
295 COG3206 GumC Uncharacterized p 21.8 1.7E+03 0.036 28.1 19.2 203 1331-1540 175-384 (458)
296 cd07657 F-BAR_Fes_Fer The F-BA 21.8 6.8E+02 0.015 29.4 10.6 81 901-985 99-179 (237)
297 PF05266 DUF724: Protein of un 21.7 3.4E+02 0.0074 31.1 8.0 70 303-372 110-179 (190)
298 KOG0804 Cytoplasmic Zn-finger 21.7 7.7E+02 0.017 32.1 11.5 11 1501-1511 438-448 (493)
299 cd08675 C2B_RasGAP C2 domain s 21.6 1.5E+02 0.0032 31.3 4.9 69 58-127 44-121 (137)
300 cd08382 C2_Smurf-like C2 domai 21.4 61 0.0013 33.0 2.0 70 45-125 31-104 (123)
301 TIGR01069 mutS2 MutS2 family p 20.5 1.1E+03 0.024 32.2 13.4 53 66-127 146-198 (771)
302 KOG0963 Transcription factor/C 20.4 2.2E+03 0.049 29.1 32.9 212 1287-1517 188-423 (629)
303 PRK10869 recombination and rep 20.2 2E+03 0.044 28.5 18.4 67 952-1025 281-347 (553)
304 PF00446 GnRH: Gonadotropin-re 20.1 50 0.0011 22.4 0.7 9 276-284 2-10 (10)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.75 E-value=1.3e-18 Score=173.92 Aligned_cols=135 Identities=32% Similarity=0.500 Sum_probs=125.2
Q ss_pred ccceeEEEEEeeeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhh
Q 000199 11 KTKVKVVFRLQFHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFV 90 (1872)
Q Consensus 11 K~k~K~vFklqFhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfV 90 (1872)
|.+.|+.|.|.+|..+..+..|..++|++--++.+++.+.|.++.|.+|.|.|++++..++++..|.+++.|++|.|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 67899999999888876667999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC--CCcccccceeecchhhccccc-CCeeeeecCCCC-CCCCeEEEEeeeecCCCC
Q 000199 91 VAMG--SSRSSILGEATINLADYADAS-KPSTVLLPLHGG-DSGTILHVTVQLLTSKTG 145 (1872)
Q Consensus 91 Vs~G--SsksgiLGEasinlAdY~~a~-kp~~VSLPLk~c-nsGtvLHVtIQ~l~~~~~ 145 (1872)
|-.+ +.+...||.++||||+|++.. +|.++.+||+.| ..+|+|+|+|++..-+++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~ 140 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRED 140 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccC
Confidence 9775 666689999999999999996 999999999999 999999999999986543
No 2
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.67 E-value=1e-07 Score=126.24 Aligned_cols=304 Identities=21% Similarity=0.292 Sum_probs=181.2
Q ss_pred HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhh----hhhhHHHHHHHHHHHHHHhhcchhHHH
Q 000199 989 VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDR----SKQTISELTEENRALMVALQDKSEESV 1064 (1872)
Q Consensus 989 ~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~----tK~~~~el~~En~al~~slqdk~ees~ 1064 (1872)
.++-|+..-..+-++++.|+.+|+.+.++++. +.-++-.++..+++ ++-.+.++..++.-+..++-.+..+-.
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~---~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQE---KSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566678888999999999888554 44444555555554 455677778888888888888888888
Q ss_pred HHHHHHHhHHHhhHhhHHHHHHHHH-------------hhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHh
Q 000199 1065 KLALEVDSFKQSFQSLHDELLVERS-------------LRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAV 1128 (1872)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aers-------------l~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~ 1128 (1872)
++..++..|.+-+++.....+..-+ ++ ...+.+++|-.+|..-..++..+-...... +.++-.
T Consensus 869 ~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr-~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks 947 (1822)
T KOG4674|consen 869 KLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLR-KELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKS 947 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776655443332 11 122223333333322222222222211111 111111
Q ss_pred hhHhhhhhHHhhhhhhHHHHHHHHHH-------HhHhhhhhhhhhhhhccccchHH-HHhhhhhhHHHHHHHHHhhhhhh
Q 000199 1129 LTKENQDLMVSLQNKSEEAAKLAVEL-------DSVRNSLQSVHDELHGERSLSDE-LKSRAIDISSQLNEKQQQLIDFD 1200 (1872)
Q Consensus 1129 dlEea~sl~~~Lls~sEe~~k~a~t~-------~q~e~~lqeL~~eL~~~~~~~e~-LQsk~~Dves~Ln~~~~~e~e~~ 1200 (1872)
.+++-. ......+....-.+ .-+++.+..|.+++.-.....+. +-..--.+.++-|+........-
T Consensus 948 ~lde~~------~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 948 ELDETR------LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAAS 1021 (1822)
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111111 11111111111122 22444444555444333333222 33333344455555555555556
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhcc---ccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhh
Q 000199 1201 QQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASE---GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKH 1277 (1872)
Q Consensus 1201 ~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e---~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~ 1277 (1872)
..+..+.++...+....--+-+....|..+--+|+++ +..|++.+.-+.+++..++..++-+..-+..+.....|+.
T Consensus 1022 ~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~ 1101 (1822)
T KOG4674|consen 1022 QANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKE 1101 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHH
Confidence 6666666666666666555556666666555566654 5678888999999999999999999999999999999987
Q ss_pred hhhhcccccchHHHHHHHHHhhhHhhhhhhh
Q 000199 1278 CQLLDLDQQKSELVQLKLLVLDLESEKSRAS 1308 (1872)
Q Consensus 1278 ~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~ 1308 (1872)
..| ..|+.-++.+|.+|+..++--|
T Consensus 1102 ~~L------eqe~~~~~~~~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1102 DAL------EQEVNELKKRIESLEKQNSLLH 1126 (1822)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 666 6788889999999999988554
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.67 E-value=4.3e-08 Score=131.26 Aligned_cols=256 Identities=19% Similarity=0.250 Sum_probs=160.8
Q ss_pred hHHHHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhh
Q 000199 1093 DLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELH 1169 (1872)
Q Consensus 1093 dl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~ 1169 (1872)
+++.++.+|-.+|++......+..-+..-+ ++..+...+.+.....++..+....-+. ...++.-+++|...+.
T Consensus 1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr---~~~l~~E~eeL~~~l~ 1684 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERR---LAALQAELEELREKLE 1684 (1930)
T ss_pred hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344555555555555544444444333222 3333444444444333333332222211 1225555556666666
Q ss_pred ccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHH
Q 000199 1170 GERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLR 1249 (1872)
Q Consensus 1170 ~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~ 1249 (1872)
++.+-.-.+-....++.+.++...++=.-......+|.+-+--|+++=.+.+..+.---++.....-+..++...|..=.
T Consensus 1685 ~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq 1764 (1930)
T KOG0161|consen 1685 ALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQ 1764 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 65555555555555666666666655555556666666666666666666666555555666677777778888888777
Q ss_pred HHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-hhhccccchhhHHHHHHHhhh
Q 000199 1250 DELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-SEESSSVTSLQSELSEMHELL 1328 (1872)
Q Consensus 1250 eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~-~~ktsef~~Ls~hLsElke~l 1328 (1872)
+....+-..|-.||..|.+|..+|++.+... ...++-.+.-|..++.+||..++.- .+....++
T Consensus 1765 ~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a--~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k------------- 1829 (1930)
T KOG0161|consen 1765 ETSQKLERLKKSLERQVKDLQLRLDEAEQAA--LKGGKKQIAKLEARIRELESELEGEQRRKAEAIK------------- 1829 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhH-------------
Confidence 7788888889999999999999999998887 4555678899999999999988732 23333222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhh
Q 000199 1329 LAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLA 1379 (1872)
Q Consensus 1329 ~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lk 1379 (1872)
+--++|.+|.||.+|+.--+++.+-+ +|..|-++...+
T Consensus 1830 ---------~~rk~er~vkEl~~q~eed~k~~~~~----q~~~dkl~~k~~ 1867 (1930)
T KOG0161|consen 1830 ---------GLRKKERRVKELQFQVEEDKKNIERL----QDLVDKLQAKIK 1867 (1930)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHH
Confidence 22478899999999999999888765 455555554443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.52 E-value=2.6e-06 Score=114.90 Aligned_cols=579 Identities=19% Similarity=0.221 Sum_probs=295.9
Q ss_pred HhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcch-------hHHHH
Q 000199 993 NAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKS-------EESVK 1065 (1872)
Q Consensus 993 y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~-------ees~~ 1065 (1872)
|..+..++-..++.+...++.++.+=.-+-.++..+....+|... .++.+...+++++.-|++-. ..-..
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~---~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA---KLSALSRDKQALESQLEELKRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444333333333333333333333222 22333333333333333322 22233
Q ss_pred HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhH
Q 000199 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSE 1145 (1872)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sE 1145 (1872)
++..+..+..-+..|.+.+-.+-.-..+++..++...++...=...+++.-.+.. ..++++.......++..+
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~-------eelee~kk~l~~~lq~~q 1392 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRL-------EELEELKKKLQQRLQELE 1392 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHH
Confidence 4444444444455555666666666677777777777777655544444333311 112222222111111111
Q ss_pred HHHHHH-HHHHhHhhhhhhhhhhhhccccchH-------HHHhhhhhhHHHHHHHHHhhhhhhhhh-------hHHHHHH
Q 000199 1146 EAAKLA-VELDSVRNSLQSVHDELHGERSLSD-------ELKSRAIDISSQLNEKQQQLIDFDQQN-------SEMIQKI 1210 (1872)
Q Consensus 1146 e~~k~a-~t~~q~e~~lqeL~~eL~~~~~~~e-------~LQsk~~Dves~Ln~~~~~e~e~~~en-------SeL~~~~ 1210 (1872)
+....| .....++.....|.+++.+.+.+.+ .|-++....+.+|+..-.+...+..+. ..+.+.+
T Consensus 1393 e~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel 1472 (1930)
T KOG0161|consen 1393 EQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTEL 1472 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111111 2222233334444444444433332 223333333344443333333222221 2222233
Q ss_pred HHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhccc--ccch
Q 000199 1211 AELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLD--QQKS 1288 (1872)
Q Consensus 1211 ~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d--~~~~ 1288 (1872)
-.|......+...+..-+.+...+..++..|...+.....-+|.+.-.+..++..+.+|..+|.|....+..-+ ....
T Consensus 1473 ~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~ 1552 (1930)
T KOG0161|consen 1473 QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRL 1552 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 33455555555566666677778888888888888888888999999999999999999999999988752221 1112
Q ss_pred HHHHHHHHHhhhHhhhhhhhhhcccc-chhhHHHHHHHhhhhh-hhHHHHH--HHHHHHHHHHHHHHHHhhchhhHHHHH
Q 000199 1289 ELVQLKLLVLDLESEKSRASEESSSV-TSLQSELSEMHELLLA-VDVRLIF--TRTQYEAWVEELVQQVYSTDRLLTELH 1364 (1872)
Q Consensus 1289 EL~~Lk~qvsdLese~S~~~~ktsef-~~Ls~hLsElke~l~A-~dvriiF--~KeQYEtkvqEL~qQL~~Skk~~eElq 1364 (1872)
++. +...-++.+.+++..-++.+.. +++...+..|...+.+ +-.|-.+ .|--+|+-+.+|.-+|+.+-+-.++.+
T Consensus 1553 ~~~-~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~ 1631 (1930)
T KOG0161|consen 1553 QLE-LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQ 1631 (1930)
T ss_pred HHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHH
Confidence 222 2334455566666443332221 3556666666666655 2222222 344789999999999999999888887
Q ss_pred hhh---ccHHHHHhH----hhhhhhHHH-------HHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh------
Q 000199 1365 TKN---VDVETVLNS----CLAREAQCN-------EENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE------ 1424 (1872)
Q Consensus 1365 ~K~---qDaedeln~----~lksEa~~~-------keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE------ 1424 (1872)
+.+ ++....+.. +..+.-... .+++-|...+.+|...++++.-.+|.+=-.+++..-++-
T Consensus 1632 K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~ 1711 (1930)
T KOG0161|consen 1632 KQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQN 1711 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 654 555554433 333322222 566677777777777777776666554333332111111
Q ss_pred ----hhhhhhHHhhhhhh-------------hhh-hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhh
Q 000199 1425 ----EYKSRAETMADNYG-------------EHK-SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQ 1486 (1872)
Q Consensus 1425 ----E~Kqr~E~~l~~~~-------------Eek-~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~ 1486 (1872)
..|.++|+.+..+- ++| .+.....+++..=|.+-.+.+-.|.-.|--+|-.|==|+.+|++.
T Consensus 1712 s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~ 1791 (1930)
T KOG0161|consen 1712 SSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEA 1791 (1930)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222332222211 111 334444444444444444444555555555555555666666655
Q ss_pred hHHHhccccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhhhhcccCCCcchhhhhhHHHH
Q 000199 1487 HAQVISSEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLHEKRESEGLPTGMQESLRIAF 1566 (1872)
Q Consensus 1487 ~~~i~~~~~~~~el~~l~~~~~el~qklseqilkteefknlsihlkelkdkaeaec~~~~ek~e~eg~~~amqeslriaf 1566 (1872)
+... +.|+---+.+|..+..+|-.-|..- .++. +|+.+..
T Consensus 1792 E~~a--~~~~k~~i~~Learir~LE~~l~~E-----------------------------~~~~--------~e~~k~~- 1831 (1930)
T KOG0161|consen 1792 EQAA--LKGGKKQIAKLEARIRELESELEGE-----------------------------QRRK--------AEAIKGL- 1831 (1930)
T ss_pred HHhh--hhccHHHHHHHHHHHHHHHHHHhHh-----------------------------hhhh--------HHHhHHH-
Confidence 4332 2333344555555555554444321 1111 1222222
Q ss_pred HHHHhHHHHHHhhhhhccchhhhHHHHHHHHHhhhHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhh
Q 000199 1567 IKEQCETKVQELKHHLSISKKHSEEMLWKLQDAIDEIENRKKSEAAHLKKNEELGVKILELEAELQSLISDK 1638 (1872)
Q Consensus 1567 ikeq~etk~qelk~qlsisKkhsEeml~KLqdaide~e~rkKsea~~lK~~eEL~~kilElEaelq~~~sdK 1638 (1872)
-++|.++-|+.+|+.==||+.+ .+||.+|....+=|. +--.+.|.|...+...+--
T Consensus 1832 --rk~er~vkEl~~q~eed~k~~~----~~q~~~dkl~~k~~~----------~krQleeaE~~~~~~~~k~ 1887 (1930)
T KOG0161|consen 1832 --RKKERRVKELQFQVEEDKKNIE----RLQDLVDKLQAKIKQ----------YKRQLEEAEEEANQNLSKY 1887 (1930)
T ss_pred --HHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHH
Confidence 2678899999999998888765 568888877765443 3334555565555554433
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.1e-06 Score=116.82 Aligned_cols=540 Identities=13% Similarity=0.095 Sum_probs=275.3
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHH
Q 000199 856 NLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEK----KALIDEKD 931 (1872)
Q Consensus 856 ~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek----~~l~~e~d 931 (1872)
.....+..+..-+..+-..|+ |.|++- .. +...++..++..+..........+-.+..+. ..+....+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ 429 (1311)
T TIGR00606 358 RHQEHIRARDSLIQSLATRLE--LDGFER--GP----FSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQAD 429 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--cCCCCC--cc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555666 333221 00 2223466777777777766666665554433 23333333
Q ss_pred HHhhhccccchhHHHH---HHHHHhhHHhh---hhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchh
Q 000199 932 RAEMSFSKSESDIVLV---KQKFEHDLRNM---IDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLD 1005 (1872)
Q Consensus 932 ~~~~~~~~aes~~~~~---kqk~e~d~~~m---~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~ 1005 (1872)
-++.++...+..+-.- +.+....+... +..+.++..-+..|+.++..+-.++.- +.. ...-..+-..+.
T Consensus 430 ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~i~ 504 (1311)
T TIGR00606 430 EIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK---AEK--NSLTETLKKEVK 504 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHH---HHh--hhhhhHHHHHHH
Confidence 3333333222222211 11222222222 333456666666777666665544411 110 112223344455
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH---HhHHHhhHhhHH
Q 000199 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEV---DSFKQSFQSLHD 1082 (1872)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El---~slK~s~qSLhd 1082 (1872)
..-.++-.|..+-..|.++|..+..-+...-++-..-.++...++.+-.-+..-++.-.+++..+ ..|.+.+.++.+
T Consensus 505 ~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 584 (1311)
T TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSK 584 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 55555566666666666777766666666666655556666555554433333222222221000 223444444444
Q ss_pred HHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhH-------HhhhhhhHHHHHHHHHHH
Q 000199 1083 ELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLM-------VSLQNKSEEAAKLAVELD 1155 (1872)
Q Consensus 1083 El~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~-------~~Lls~sEe~~k~a~t~~ 1155 (1872)
++...+.-.......++.+...+......+.....+....-+.+.++ ..-.... -++-...+++..+..+..
T Consensus 585 el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~ 663 (1311)
T TIGR00606 585 EINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-CGSQDEESDLERLKEEIEKSSKQRAMLAGATA 663 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555554444444444444444333333332222210 0111111 122222333334447777
Q ss_pred hHhhhhhhhhhhhhccc-------cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhH
Q 000199 1156 SVRNSLQSVHDELHGER-------SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYA 1228 (1872)
Q Consensus 1156 q~e~~lqeL~~eL~~~~-------~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~k 1228 (1872)
.|+.+++..+++-+.+| ..-+..+....++++.+................+...++.|..-+...-...
T Consensus 664 ~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~---- 739 (1311)
T TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII---- 739 (1311)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----
Confidence 88999998865555554 3344456677777777777656666666666677777776644333222211
Q ss_pred HHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchh---hhhhhhhcccccchHHHHHHHHHhhhHhhhh
Q 000199 1229 EESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN---EKHCQLLDLDQQKSELVQLKLLVLDLESEKS 1305 (1872)
Q Consensus 1229 ee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLd---Ek~~qL~~~d~~~~EL~~Lk~qvsdLese~S 1305 (1872)
.....++-.++.-+..+.+++..+..--++++.++..++..++ .....+..++....++..++.++.+|+.+..
T Consensus 740 ---~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~ 816 (1311)
T TIGR00606 740 ---DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ 816 (1311)
T ss_pred ---HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1122345556666777777777777777777777777777773 3445556668888999999999999988887
Q ss_pred hhhhhccccchhhHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH---HhhhccHHHHHhHhhh
Q 000199 1306 RASEESSSVTSLQSELSEMHELLLAV---DVRLIFTRTQYEAWVEELVQQVYSTDRLLTEL---HTKNVDVETVLNSCLA 1379 (1872)
Q Consensus 1306 ~~~~ktsef~~Ls~hLsElke~l~A~---dvriiF~KeQYEtkvqEL~qQL~~Skk~~eEl---q~K~qDaedeln~~lk 1379 (1872)
...- .-++..|..++..+...+.+. -=.+.-.+.+....+..|..++.--......+ .....+.+..++....
T Consensus 817 ~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~ 895 (1311)
T TIGR00606 817 GSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895 (1311)
T ss_pred cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 224455667776666555552 22233444555666777744443332222222 2233444445554444
Q ss_pred hhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhh
Q 000199 1380 REAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN 1417 (1872)
Q Consensus 1380 sEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand 1417 (1872)
.-..+..+..++...|..+..+++...++...+...++
T Consensus 896 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444445444444444444433
No 6
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.38 E-value=1.7e-05 Score=106.07 Aligned_cols=786 Identities=19% Similarity=0.196 Sum_probs=380.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCCchhhhhhhhhccCCCcchhhhhhHhhhhhccccccccccccch
Q 000199 582 VNQLQKDLELLSSQVLSMYQTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQHLGGDIL 661 (1872)
Q Consensus 582 aerLQeefk~LS~Qm~S~fe~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~Kl~~~~n~~~~~k~q~l~~~i~ 661 (1872)
-..+|++|.-|=.+|.-.=..|+|+.+..- ++.+ |+.-+++-+++.+..
T Consensus 656 ~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~------fA~e------------------kle~L~~~ie~~K~e------- 704 (1822)
T KOG4674|consen 656 LKKLQEDFDSLQKEVTAIRSQLEKLKNELN------LAKE------------------KLENLEKNLELTKEE------- 704 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHH------------------HHHHHHHHHHHHHHH-------
Confidence 346888999998888888888888877542 1111 444555555555522
Q ss_pred HHhhh-hhhHHHHHHH---HHHHHHHHHHHhhhhhHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHH--
Q 000199 662 IEDLK-RSLYLQEGLY---RKVEEEACELLSVNIYLDVFSKTLQKTLLEASGEIRLMKERMDELSHQLELSTESNELL-- 735 (1872)
Q Consensus 662 ~e~l~-rs~~lqe~l~---~~ve~e~~em~~~ni~~~vfs~~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l-- 735 (1872)
++.|+ |--+|+.-+. ++|..=.-||+.+|....+. ...+.-|.+.=.+-..+...|
T Consensus 705 ~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~l------------------e~ev~~LKqE~~ll~~t~~rL~~ 766 (1822)
T KOG4674|consen 705 VETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKL------------------EAELSNLKQEKLLLKETEERLSQ 766 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444 4444554443 33333233556666554432 222333333333333333333
Q ss_pred --------HHHHHHHhhhhhhhhhc-cchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHH
Q 000199 736 --------MQRLQTAMNDIHFLNEY-KASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYE 806 (1872)
Q Consensus 736 --------~~~l~~a~d~~~~l~e~-~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ 806 (1872)
..+|+.-++.+.+.++. ..+..+. =.-+-++|.+++.=+.+- ..+..
T Consensus 767 e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~---------------------k~~~e~~i~eL~~el~~l---k~klq 822 (1822)
T KOG4674|consen 767 ELEKLSAEQESLQLLLDNLQTQKNELEESEMAT---------------------KDKCESRIKELERELQKL---KKKLQ 822 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33444444444433221 1111111 111223444443333332 22345
Q ss_pred HHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhh---cccCCccccc
Q 000199 807 AIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLS---SYGESFSELC 883 (1872)
Q Consensus 807 ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~---sy~~~~~~l~ 883 (1872)
-|..+..+|..=+.+ -+.-.|--++++..+.+.+-+-..+++.++..|+.++.+|=. +-.....+
T Consensus 823 ~~~~~~r~l~~~~~~----------~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~-- 890 (1822)
T KOG4674|consen 823 EKSSDLRELTNSLEK----------QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLN-- 890 (1822)
T ss_pred HHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh--
Confidence 555555555433332 233334444444455555555555555555555555555421 21222222
Q ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHhhhccccchhHHHHHHHHHhhHH
Q 000199 884 LHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKA-------LIDEKDRAEMSFSKSESDIVLVKQKFEHDLR 956 (1872)
Q Consensus 884 l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~-------l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~ 956 (1872)
++++ --+.|.+-..-. .+..+.+|=.|..+..+ +.++--...-++...++.+...+-.|+.++.
T Consensus 891 l~~~-----~~~~d~~~~~~~----Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie 961 (1822)
T KOG4674|consen 891 LDSK-----SSNEDATILEDT----LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIE 961 (1822)
T ss_pred cccc-----chhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1111 113344433333 34455666444444333 3334444455556666677777777788888
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHH----
Q 000199 957 NMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVT---- 1032 (1872)
Q Consensus 957 ~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~---- 1032 (1872)
....|+.-...-+-.|+.+++.+-+.+--+.+-.+ ..++.+-.++..+.+.|..+-.-+.+.....
T Consensus 962 ~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e----------~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen 962 SLHKKITSLEEELSELEKEIENLREELELSTKGKE----------DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh----------hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877776666666666666554433222211 1223333333333333333333222222111
Q ss_pred -------hhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHH-----------HhhhhH
Q 000199 1033 -------EEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVER-----------SLRDDL 1094 (1872)
Q Consensus 1033 -------~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aer-----------sl~edl 1094 (1872)
.=++.+-..-+-=..+..++...++.-.++-.++..|+..|+.++++.|+.+-..- ....-+
T Consensus 1032 ~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~ 1111 (1822)
T KOG4674|consen 1032 NDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNEL 1111 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHH
Confidence 11111111111112345567777888888889999999999999999998875432 222334
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHH-HHHHhHhhhhhhhhhhhhcccc
Q 000199 1095 KSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLA-VELDSVRNSLQSVHDELHGERS 1173 (1872)
Q Consensus 1095 ~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a-~t~~q~e~~lqeL~~eL~~~~~ 1173 (1872)
.....+|-.+.+.+|.+|....+.-++ ...|.|..=++.--++.++. -++.-+...+.=+-.+...+..
T Consensus 1112 ~~~~~~L~~qNslLh~qie~~s~~~~~----------~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~q 1181 (1822)
T KOG4674|consen 1112 KKRIESLEKQNSLLHDQFEELSQQSAV----------SNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQ 1181 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh----------ccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 444445555555555555444444332 11222222222233333333 4555566666666677777777
Q ss_pred chHHHHhhhhhhHHHHHHHHHhh----------hhhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhHHHhhhhhccccc
Q 000199 1174 LSDELKSRAIDISSQLNEKQQQL----------IDFDQQNSEMIQKIAE---LTSENQALMVSLQEYAEESSRLASEGNT 1240 (1872)
Q Consensus 1174 ~~e~LQsk~~Dves~Ln~~~~~e----------~e~~~enSeL~~~~~~---L~~en~a~mv~L~d~kee~aq~a~e~~~ 1240 (1872)
..+.+++...|++.-|+.+.+.- ..++...+.++...++ |..+|.+..--++++..+
T Consensus 1182 q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~---------- 1251 (1822)
T KOG4674|consen 1182 QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDK---------- 1251 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------
Confidence 88888888888888888877655 3344444555555554 455555555444444422
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-----hhhccccc
Q 000199 1241 SKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-----SEESSSVT 1315 (1872)
Q Consensus 1241 Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~-----~~ktsef~ 1315 (1872)
+..++-=-..|+.....|+++++++.+.+.- -..|..+-|.++.||....... ..-.++|.
T Consensus 1252 -----------i~kl~~el~plq~~l~el~~e~~~~~ael~~---l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~ 1317 (1822)
T KOG4674|consen 1252 -----------IEKLNFELAPLQNELKELKAELQEKVAELKK---LEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEIS 1317 (1822)
T ss_pred -----------HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 3333322333333334444444444333321 1233334444444444332111 11111222
Q ss_pred hhhHHHHHHHhhhhh-----------------------------hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhh
Q 000199 1316 SLQSELSEMHELLLA-----------------------------VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTK 1366 (1872)
Q Consensus 1316 ~Ls~hLsElke~l~A-----------------------------~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K 1366 (1872)
.|+-.|. -++.++| .==++--+++-|++...++..|.....+-...-...
T Consensus 1318 ~Lk~el~-~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~ 1396 (1822)
T KOG4674|consen 1318 RLKEELE-EKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELM 1396 (1822)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 1111111 111122233334444444444411111100000000
Q ss_pred hccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh---hhhhh-hHHhhhhhhh-hh
Q 000199 1367 NVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE---EYKSR-AETMADNYGE-HK 1441 (1872)
Q Consensus 1367 ~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE---E~Kqr-~E~~l~~~~E-ek 1441 (1872)
.. --.+..+-..++..|..-|.+|..+|..+-..-|.+-..-+-+.-|+- +.+++ .....+.|.- -.
T Consensus 1397 ~e--------~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~ 1468 (1822)
T KOG4674|consen 1397 QE--------DTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEIKKLL 1468 (1822)
T ss_pred HH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 00 001111112222224444555555555533333333333333333332 22222 2223333332 22
Q ss_pred hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHH
Q 000199 1442 SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKL 1514 (1872)
Q Consensus 1442 ~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qkl 1514 (1872)
......+.-.+....+++.....+...++++.=.+.++.+-....+-++.+.+.|-.++..++.+.-+..+++
T Consensus 1469 e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1469 ETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777888888999999999999999999999999999999999999999999988888887776
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=2.4e-05 Score=104.34 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHH----H
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIE----A 534 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve----~ 534 (1872)
..++..|..+..+++.++.....++.+|+.+..-.+.+-...... .+.+..+..++..+..+-..++.+++.++ .
T Consensus 220 ~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~-~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~ 298 (1311)
T TIGR00606 220 CEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQG 298 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 457788888999999999999999988888887766665543332 33446677788888888888888887542 2
Q ss_pred HHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHh
Q 000199 535 MRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRAR 575 (1872)
Q Consensus 535 Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtR 575 (1872)
=.++|+.-...|.+....+.....+.+..--.++.-++..|
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~ 339 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLN 339 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23667777777877777777766666666666665554444
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.23 E-value=2e-05 Score=104.10 Aligned_cols=794 Identities=20% Similarity=0.261 Sum_probs=379.7
Q ss_pred HHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCH
Q 000199 819 LEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDL 898 (1872)
Q Consensus 819 l~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~ 898 (1872)
+..+.-+.+.++.+..-.+..++.+...++.+..+...+..-+..|..+-..... |- ....++....+
T Consensus 160 iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y~-----------~l~~e~~~~~~ 227 (1163)
T COG1196 160 LIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQ-----------ELKAELRELEL 227 (1163)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHH
Confidence 6677888899999999999999999999999888888888888888877665543 21 11222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhcc----HHHHHHHHH
Q 000199 899 TSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVS----NALLQKLQL 974 (1872)
Q Consensus 899 ~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s----~~l~qklq~ 974 (1872)
.-+...+..+.. ++-.+.++...+..+.+.....+..++.++...+.+++ +++.-+.++... ....+.+..
T Consensus 228 ~~~~~~~~~~~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~le~ 302 (1163)
T COG1196 228 ALLLAKLKELRK----ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE-ELREELEELQEELLELKEEIEELEG 302 (1163)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 44555566666666666666666666666666666653 344444433111 112334444
Q ss_pred HHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhh-hHHHHHHHHHHHH
Q 000199 975 RFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQ-TISELTEENRALM 1053 (1872)
Q Consensus 975 ~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~-~~~el~~En~al~ 1053 (1872)
++..+..+..-+....+.+...-..+...+...+.++......=..+.+.+..+.....++....- ...++.....++-
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 382 (1163)
T COG1196 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444444444455555555555444432233344444445555555544444 2222333333333
Q ss_pred HHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhh
Q 000199 1054 VALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKEN 1133 (1872)
Q Consensus 1054 ~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea 1133 (1872)
..+-+-..+...+..++..++..++++..++.....-.+++.....++..+++.++..+.....+...|..........-
T Consensus 383 ~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (1163)
T COG1196 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556666666666666666666666666666666666666666655555554444444422221111111
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHH---HHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHH
Q 000199 1134 QDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDE---LKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKI 1210 (1872)
Q Consensus 1134 ~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~---LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~ 1210 (1872)
..+-.++....+.... ++.-++++..++..+...... ..-.-....+-+.+-...-.+++.-..+|.+.+
T Consensus 463 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Ai 535 (1163)
T COG1196 463 KELERELAELQEELQR-------LEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETAL 535 (1163)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHH
Confidence 1111111111111111 222222222222222211111 000000111112222234455555555777777
Q ss_pred HHH--------hhhH----HHHHHHHhHhH-------------HHhh---hhhccccchHHHHHHHHHHHhhhh------
Q 000199 1211 AEL--------TSEN----QALMVSLQEYA-------------EESS---RLASEGNTSKETLQSLRDELQSER------ 1256 (1872)
Q Consensus 1211 ~~L--------~~en----~a~mv~L~d~k-------------ee~a---q~a~e~~~Lk~~L~Sl~eEl~~er------ 1256 (1872)
+.. +-.| ......|...+ .... .+++.+..+-..|..+...+..-.
T Consensus 536 e~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~ 615 (1163)
T COG1196 536 EAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGD 615 (1163)
T ss_pred HHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCC
Confidence 663 1122 11122222211 0000 002222222233444333222211
Q ss_pred -----------hhhHhh--hhHHHHhhhchhhhhhhhhcc-------cccchHHHHHHHHHhhhHhhhhhhhhhc----c
Q 000199 1257 -----------SLRDEL--KNVVTDLTSQLNEKHCQLLDL-------DQQKSELVQLKLLVLDLESEKSRASEES----S 1312 (1872)
Q Consensus 1257 -----------slreeL--E~~V~~L~skLdEk~~qL~~~-------d~~~~EL~~Lk~qvsdLese~S~~~~kt----s 1312 (1872)
-+-... ..++.-|.+.+-+.--.++.= ...+.+|..|..++.+++..+.....+- .
T Consensus 616 t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 695 (1163)
T COG1196 616 TLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKN 695 (1163)
T ss_pred eEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 111122222222221111110 0011155556666666665554331111 1
Q ss_pred ccchhhHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhH
Q 000199 1313 SVTSLQSELSEMHELLLAVDVRLIFTRTQYE---AWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENA 1389 (1872)
Q Consensus 1313 ef~~Ls~hLsElke~l~A~dvriiF~KeQYE---tkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNa 1389 (1872)
.+..+..++.++.........++.+.+.+.. ...+.+..++...+.-.+++..........++. .-.+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~l~ 768 (1163)
T COG1196 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE-------LEEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 2234555555555555556666667666665 444455555555555544443333333322222 122223
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhh---hhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhh
Q 000199 1390 RLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEY---KSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLM 1466 (1872)
Q Consensus 1390 eLl~~I~eLesELeasiaekR~L~nand~~~AElEE~---Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~ 1466 (1872)
.+...+..++.+++..-...+.+..+-+....++.+. ...++..+.....++..+..+++.+..=+...+++++.|.
T Consensus 769 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333332333333333333333322 2333344444444556678888888888889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHhcccc----chhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHH
Q 000199 1467 MSREELEIKVVVLKAKLAEQHAQVISSEG----YIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAEC 1542 (1872)
Q Consensus 1467 ~~k~e~ei~~~vlk~kl~e~~~~i~~~~~----~~~el~~l~~~~~el~qklseqilkteefknlsihlkelkdkaeaec 1542 (1872)
..-++++....-++.++.+.++++..+.. .-.+...+.++..++..++.+.--..+.+..-=..|..-....+.++
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 928 (1163)
T COG1196 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928 (1163)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887744 34455566666666666665544444433322222222222333333
Q ss_pred HhhhhhcccCCCcchhhhhhHHHHHHHHhHHHHHHhhhhhccchhhhHHHHHHHHHhhhHHhhhhhhhhhhhhhhhhhhh
Q 000199 1543 LKLHEKRESEGLPTGMQESLRIAFIKEQCETKVQELKHHLSISKKHSEEMLWKLQDAIDEIENRKKSEAAHLKKNEELGV 1622 (1872)
Q Consensus 1543 ~~~~ek~e~eg~~~amqeslriafikeq~etk~qelk~qlsisKkhsEeml~KLqdaide~e~rkKsea~~lK~~eEL~~ 1622 (1872)
....+.-..++|++... ..+.++..++-+ |.....-- ..-+-.-++..-
T Consensus 929 ~~~~~~~~~~~~~~~~~----------~~~~~i~~le~~------------------i~~lg~VN---~~Aiee~e~~~~ 977 (1163)
T COG1196 929 PELEEELEEEYEDTLET----------ELEREIERLEEE------------------IEALGPVN---LRAIEEYEEVEE 977 (1163)
T ss_pred HHHHhhhccccccchhH----------HHHHHHHHHHHH------------------HHhccCCC---hhHHHHHHHHHH
Confidence 33333333334433322 333333333322 11111110 112223344555
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhHhhhhhhhccccchhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000199 1623 KILELEAELQSLISDKREKTKAYDLAKAELECSLMSLECCKEEKEKLEVSLHECNEEKSRLYSDL 1687 (1872)
Q Consensus 1623 kilElEaelq~~~sdKRe~~~aYD~~kae~eCsl~sleCCkeEKqklEasL~eC~eE~~ki~~el 1687 (1872)
+.-+|..+++++.-+++...+....|+.+. +..+.++...-|+.-.+|...|
T Consensus 978 r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~-------------~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 978 RYEELKSQREDLEEAKEKLLEVIEELDKEK-------------RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 666777777777777777766666666543 4566666666666666665544
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.12 E-value=0.0002 Score=92.06 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=41.2
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHH
Q 000199 790 EWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMH 869 (1872)
Q Consensus 790 e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~ 869 (1872)
+|..++.++..++..+..+..+...+..-+.+-.-+...++.++..+...+..+..++..+-+-...+...+..++.++.
T Consensus 226 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~ 305 (1179)
T TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555555555555555555444443333334444555555555555555555554444445544555554444
Q ss_pred Hh
Q 000199 870 DM 871 (1872)
Q Consensus 870 ~~ 871 (1872)
.+
T Consensus 306 ~~ 307 (1179)
T TIGR02168 306 IL 307 (1179)
T ss_pred HH
Confidence 43
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.05 E-value=5.5e-05 Score=96.47 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhh
Q 000199 1243 ETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESE 1303 (1872)
Q Consensus 1243 ~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese 1303 (1872)
.++..+...+.....-.++++..+..++.+++.....+ ....++..|+.++.+++..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~----~~~~~l~~l~~~~~~l~~~ 524 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV----EAEDRIERLEERREDLEEL 524 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665555433322 2244455555555555553
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=98.83 E-value=0.0004 Score=88.90 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=32.9
Q ss_pred hhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhh
Q 000199 1233 RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1872)
Q Consensus 1233 q~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL 1280 (1872)
.+...+..+..-+..+..++...+++...++..+..+...|.+-.|++
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~ 456 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 344455666666777777777777777777777777776677777777
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.00062 Score=86.84 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 000199 1316 SLQSELSEM 1324 (1872)
Q Consensus 1316 ~Ls~hLsEl 1324 (1872)
++..++.++
T Consensus 529 ~l~~~~~~l 537 (880)
T PRK03918 529 KLKEKLIKL 537 (880)
T ss_pred HHHHHHHHH
Confidence 333344333
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.80 E-value=0.0025 Score=82.34 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhh
Q 000199 1612 AHLKKNEELGVKILELEAELQSLI 1635 (1872)
Q Consensus 1612 ~~lK~~eEL~~kilElEaelq~~~ 1635 (1872)
...+..++|..-|-++..++..++
T Consensus 1004 dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 1004 FLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777777776
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=0.0031 Score=81.93 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhhHhhhhh
Q 000199 1288 SELVQLKLLVLDLESEKSR 1306 (1872)
Q Consensus 1288 ~EL~~Lk~qvsdLese~S~ 1306 (1872)
.++..+...+..|+.++..
T Consensus 674 ~~l~~l~~~l~~l~~~l~~ 692 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSS 692 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555543
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.71 E-value=0.0047 Score=80.28 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=20.5
Q ss_pred HHHHHHhhhHHHhccccch----hHHHHHHHHhHHHHHHHHHH
Q 000199 1479 LKAKLAEQHAQVISSEGYI----DEQKMLQNQCNELRRKLSEQ 1517 (1872)
Q Consensus 1479 lk~kl~e~~~~i~~~~~~~----~el~~l~~~~~el~qklseq 1517 (1872)
+..++++++++|-.++.-. .+...+..++..|..++.+-
T Consensus 956 l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl 998 (1164)
T TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL 998 (1164)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554322 55555556666555555543
No 16
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.031 Score=71.85 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=10.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHh
Q 000199 1389 ARLLTSLDTLRSELDSAIAENRVL 1412 (1872)
Q Consensus 1389 aeLl~~I~eLesELeasiaekR~L 1412 (1872)
.++...+..+..+++....+.+.|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 559 AELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444443333
No 17
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.20 E-value=4.6e-07 Score=116.02 Aligned_cols=742 Identities=21% Similarity=0.271 Sum_probs=10.6
Q ss_pred CCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HH--------------
Q 000199 455 VNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML----------GE-------------- 510 (1872)
Q Consensus 455 a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~----------~E-------------- 510 (1872)
.+.+-.|+.+|-+|-.+||.-|.-|..-+++-..|...++.|+..|+...-.+. .|
T Consensus 38 ~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~ 117 (859)
T PF01576_consen 38 QKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQ 117 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999999998776543322 22
Q ss_pred ----HHhHHHhhhhhh-------hhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhh
Q 000199 511 ----LQNLRNEHSSCL-------YTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYS 579 (1872)
Q Consensus 511 ----lqnLr~EhS~~l-------~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA 579 (1872)
+..|+.-|+.-+ ..+...++.+++-...|...+......++.++.+|++.|+..-+.|..|.-.+++..
T Consensus 118 ~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~kle 197 (859)
T PF01576_consen 118 HEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLE 197 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Confidence 333443343322 122222333333445556666666677777888888888887777877777666643
Q ss_pred HH----------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCCchhhhhhhhhccCCCcchhhhhhHhhhhhcc
Q 000199 580 IA----------VNQLQKDLELLSSQVLSMYQTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYI 649 (1872)
Q Consensus 580 ~a----------aerLQeefk~LS~Qm~S~fe~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~Kl~~~~n~~~ 649 (1872)
-. ..+|+.++.-|+.++...=..+-.+.+ .+. .+...|.++..+++
T Consensus 198 e~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r-----------~k~-------------~L~~qLeelk~~le 253 (859)
T PF01576_consen 198 ESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQR-----------EKS-------------SLESQLEELKRQLE 253 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH-------------HHHHHHHhhHHHHH
Confidence 22 122222222222222111100000000 000 01111111111111
Q ss_pred ccccccccccchHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcc
Q 000199 650 GVKKQHLGGDILIEDLKRSLYLQEGLYRKVEEEACELLSVNIYLDVFSKTLQKTLLEASGEIRLMKERMDELSHQ-LELS 728 (1872)
Q Consensus 650 ~~k~q~l~~~i~~e~l~rs~~lqe~l~~~ve~e~~em~~~ni~~~vfs~~l~et~~~a~~~i~~mker~~~l~~q-l~~s 728 (1872)
.-++... -+-..++.-.+=-+.|...+++|.-. -..|+-.+-.+-.+|.-++.|++.-..+ .+--
T Consensus 254 eEtr~k~---~L~~~l~~le~e~~~L~eqleeE~e~-----------k~~l~~qlsk~~~El~~~k~K~e~e~~~~~Eel 319 (859)
T PF01576_consen 254 EETRAKQ---ALEKQLRQLEHELEQLREQLEEEEEA-----------KSELERQLSKLNAELEQWKKKYEEEAEQRTEEL 319 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhhhhh---hhHHHHHHHHHHHHHHHHHHhhhhhh-----------HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHH
Confidence 1111000 00000000000002222222322210 1123334445566777777777775555 5555
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHH
Q 000199 729 TESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAI 808 (1872)
Q Consensus 729 ~~~~~~l~~~l~~a~d~~~~l~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac 808 (1872)
-++|.-|..+|..+=.++...+...+.=--.|.-+.-...-+-..|......++-|-.|..-++..+.++ ..++...
T Consensus 320 EeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~---k~~~~~~ 396 (859)
T PF01576_consen 320 EEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEW---KAKVEEL 396 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHH
Confidence 6677777777766655554444332222222222222222222333333344444444444444444333 2222222
Q ss_pred HHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccc
Q 000199 809 AAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKS 888 (1872)
Q Consensus 809 ~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s 888 (1872)
.. +...++.+.+.+..++-.++..++++-.-...+......|+..+.++....|.+-..+
T Consensus 397 ~~--------------e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v------ 456 (859)
T PF01576_consen 397 QA--------------ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSV------ 456 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH--------------HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccch------
Confidence 22 2233334444444444444444444444444555555566666666655444332221
Q ss_pred cccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccH
Q 000199 889 ADQNLE--SKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSN 966 (1872)
Q Consensus 889 ~~~dl~--~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~ 966 (1872)
|+|+ .+.|.. .++ .|....+.++.....++...-..+.++-.||+.|+.+|. +|-.-..
T Consensus 457 --~eLek~kr~LE~---e~~-----------El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~---eKeeE~E 517 (859)
T PF01576_consen 457 --HELEKAKRRLEQ---EKE-----------ELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQ---EKEEEFE 517 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHH---HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHH
Confidence 2222 122222 222 233344445555555666666778888889999998877 4444445
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhH----hhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhH
Q 000199 967 ALLQKLQLRFEAVADKLKVSSEVEENN----AQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTI 1042 (1872)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y----~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~ 1042 (1872)
..-..+|..|..|-.-| |.|-++ ......|=++|+.|++.|...+.-|.++...|..+.....++-.
T Consensus 518 ~~Rr~~qr~l~~le~~L----E~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~----- 588 (859)
T PF01576_consen 518 ETRRNHQRQLESLEAEL----EEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQR----- 588 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-----
Confidence 55566677776665555 333333 23345677889999999998888888877777666655554331
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1043 ~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
.+.+..+ ...-++ +.....-..+..|+..+..+...+-.....+.-.+..+.++..+++++..+--++..++..|
T Consensus 589 -~lee~~~-~~~~~~---~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~l 663 (859)
T PF01576_consen 589 -ELEEAQR-AREELR---EQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKL 663 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -hhHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1111111 111111 11111122233344444444444444444555556666666666655554444444444433
Q ss_pred ---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhh
Q 000199 1123 ---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDF 1199 (1872)
Q Consensus 1123 ---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~ 1199 (1872)
+..+..++++..+ -...+-.++.-....+.........-
T Consensus 664 e~~i~~l~~eleE~~~--------------------------------------~~~~~~ek~kka~~~~~~l~~eL~~E 705 (859)
T PF01576_consen 664 EAEIQQLEEELEEEQS--------------------------------------EAEAAEEKAKKAQAQAAQLAEELRQE 705 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 3333333333333 22222233333333222222222222
Q ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHh-hhhhccccchHHHHHHHHHHHhhhhhhhH-------hhhhHHHHhhh
Q 000199 1200 DQQNSEMIQKIAELTSENQALMVSLQEYAEES-SRLASEGNTSKETLQSLRDELQSERSLRD-------ELKNVVTDLTS 1271 (1872)
Q Consensus 1200 ~~enSeL~~~~~~L~~en~a~mv~L~d~kee~-aq~a~e~~~Lk~~L~Sl~eEl~~erslre-------eLE~~V~~L~s 1271 (1872)
-..+..+......|-..+.++-+-|.+.-.-+ .-....|.+|..-+.-|+.+|+.+.--+. .++.+|-+|..
T Consensus 706 q~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~ 785 (859)
T PF01576_consen 706 QDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQF 785 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 23344444444445444555544444432111 11124677888899999999999988775 56778888888
Q ss_pred chhhhhhhhhcc----cccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhh
Q 000199 1272 QLNEKHCQLLDL----DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAV 1331 (1872)
Q Consensus 1272 kLdEk~~qL~~~----d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~ 1331 (1872)
++++-+.....+ |....=|-.+|.++-+.+...++..- -++-++-.|-++.+.+.+.
T Consensus 786 q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~---k~Rk~q~elee~~e~~~~~ 846 (859)
T PF01576_consen 786 QVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLA---KYRKLQRELEEAEERAEAA 846 (859)
T ss_dssp ------------------------------------------------SSSSHHHHHTCCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 888877655322 45555566667777777666664432 2346677777777666553
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.15 E-value=0.079 Score=68.79 Aligned_cols=340 Identities=18% Similarity=0.273 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHhhhhccchH-------HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhh
Q 000199 966 NALLQKLQLRFEAVADKLKVSSE-------VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRS 1038 (1872)
Q Consensus 966 ~~l~qklq~~~e~~~~k~k~~se-------~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~t 1038 (1872)
+--+++|+.++..+-+++.++.. -=+-|-+...-.=+++|.++++|..-.++...+.-++.++..+..++
T Consensus 244 Er~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~--- 320 (775)
T PF10174_consen 244 ERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM--- 320 (775)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---
Confidence 33455577777777777666543 11223333333445577777777777766666666666665555543
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHh
Q 000199 1039 KQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1872)
Q Consensus 1039 K~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1872)
+.-+.-|. .||--|.+....|-.+++.|..-+..-|..+-.--.....+.+..+-+++++..+...+.--+-+
T Consensus 321 r~hi~~lk-------esl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~k 393 (775)
T PF10174_consen 321 RQHIEVLK-------ESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERK 393 (775)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 23444566666777777777777666666666666666666666666666666666666555544
Q ss_pred hHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHH--HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH-HHHHh
Q 000199 1119 KSELIQKTAVLTKENQDLMVSLQNKSEEAAKLA--VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLN-EKQQQ 1195 (1872)
Q Consensus 1119 nqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a--~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln-~~~~~ 1195 (1872)
...|-.++=+..+--..--..|....+-+..-| +.-......|++-. ...+.++..-.++-.-.. .....
T Consensus 394 i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~-------~eker~~e~l~e~r~~~e~e~~Ee 466 (775)
T PF10174_consen 394 INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEAL-------REKERLQERLEEQRERAEKERQEE 466 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444422211111111111111222222111000 11111111111111 122222222211111111 12233
Q ss_pred hhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHH------Hh
Q 000199 1196 LIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVT------DL 1269 (1872)
Q Consensus 1196 e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~------~L 1269 (1872)
-..|-.++..|...++.|+..-.+.-..|.+.+++-+-+++...+-..-|.+++=++..-+-=-..++..+. .+
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~ 546 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAEL 546 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhh
Confidence 346677888888889999888888888888888887777777777777776666666544332223333221 22
Q ss_pred hhchhhhhhhh----hcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHH
Q 000199 1270 TSQLNEKHCQL----LDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1872)
Q Consensus 1270 ~skLdEk~~qL----~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElk 1325 (1872)
+..+......+ ...+....|+.+|-..+-.++.++...-.+ |..|..+|.+.+
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~k---i~~LekeLek~~ 603 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKK---IGELEKELEKAQ 603 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHhc
Confidence 22222222222 123455788888888888888888743333 336666665544
No 19
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.15 E-value=5.5e-07 Score=115.32 Aligned_cols=569 Identities=19% Similarity=0.237 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhh-h-------HhHHHHHHHHHHHHHHhhh--
Q 000199 804 KYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASV-N-------KNLQRTINNLQNKMHDMLS-- 873 (1872)
Q Consensus 804 ky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~-~-------~~lq~~~~~lq~kl~~~l~-- 873 (1872)
....--.|...|.+-++.+.-..+.+...++.++.++..+|..|+.-+.. . ..|+.-+.-++..+...-.
T Consensus 265 ~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~ 344 (859)
T PF01576_consen 265 QLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKV 344 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445556666677777777888888888888888888888774433 3 3333333333333332221
Q ss_pred -cccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHH
Q 000199 874 -SYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFE 952 (1872)
Q Consensus 874 -sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e 952 (1872)
+-++...-|--.-..+..+| ....+...+|+.=|++.=.-+-.+......+..++|.++...+..++++..++..+
T Consensus 345 ~~LeK~k~rL~~EleDl~~eL--e~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l- 421 (859)
T PF01576_consen 345 SSLEKTKKRLQGELEDLTSEL--EKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL- 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-
Confidence 11222222111111111111 12233344555544333223334445556677888999999999999999888776
Q ss_pred hhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHH
Q 000199 953 HDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVT 1032 (1872)
Q Consensus 953 ~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~ 1032 (1872)
..+.+.+....--...|+.++..++..++-..-.=-........|-..++.|..+|.++....+..=+.++-|
T Consensus 422 ---ee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl---- 494 (859)
T PF01576_consen 422 ---EELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRL---- 494 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3455555555555677777777776554432111111111222222222222222222222222221121111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhh
Q 000199 1033 EEFDRSKQTISELTEENRALMVALQDKSEESVK----LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAK 1108 (1872)
Q Consensus 1033 ~E~~~tK~~~~el~~En~al~~slqdk~ees~~----~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK 1108 (1872)
...+..+. .-+=--|++|.++.-. +...|++|+.+|..-+...........+++..+.+|-.+|++-
T Consensus 495 ------~~el~~~r---~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~ 565 (859)
T PF01576_consen 495 ------QVELQQLR---QEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHA 565 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------HHHHHHHH---HHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111121 1122245677766543 4677788888877777776667777788888888888888877
Q ss_pred hhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhh
Q 000199 1109 HSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDI 1185 (1872)
Q Consensus 1109 ~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dv 1185 (1872)
...-.++--+...+ ++.+...++++.....++....-.+- --...+.+-++++...+....+..-.+..-..|+
T Consensus 566 n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e---~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~ 642 (859)
T PF01576_consen 566 NRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSE---RRLRALQAELEELREALEQAERARKQAESELDEL 642 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544443333 55555555555443322222111110 0112234444444444444443333333333344
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhH
Q 000199 1186 SSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNV 1265 (1872)
Q Consensus 1186 es~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~ 1265 (1872)
...++.....-.-.......|..-+.-|..+-.+....+..--+.......++.+|..-|..-.+....+-..|-.|+..
T Consensus 643 ~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q 722 (859)
T PF01576_consen 643 QERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQ 722 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333333344444444444454444444444433334445566777777777777778888888889999999
Q ss_pred HHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-hhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 000199 1266 VTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-SEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEA 1344 (1872)
Q Consensus 1266 V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~-~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEt 1344 (1872)
|-+|+.+|++....- ...++.-+..|...|.+|+.++-.- ...+...+ .+ .-++-
T Consensus 723 ~keLq~rl~e~E~~~--~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k----~~------------------rk~er 778 (859)
T PF01576_consen 723 VKELQARLEEAEQSA--LKGGKKQIAKLEARIRELEEELESEQRRRAEAQK----QL------------------RKLER 778 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhh--hcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HH------------------HHHHh
Confidence 999999999987766 4566778888888899988887632 22333222 11 23567
Q ss_pred HHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh
Q 000199 1345 WVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE 1424 (1872)
Q Consensus 1345 kvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE 1424 (1872)
+|-||..|+.-.+++.+.++ |..+-+ ..+|-.++-.++.+=...-.....|+-+.-||+
T Consensus 779 ~~kEl~~q~ee~~k~~~~~~----d~~~kl-----------------~~k~k~~krq~eeaEe~~~~~~~k~Rk~q~ele 837 (859)
T PF01576_consen 779 RVKELQFQVEEERKNAERLQ----DLVDKL-----------------QLKLKQLKRQLEEAEEEASRNLAKYRKLQRELE 837 (859)
T ss_dssp -------------------------------------------------------------------------SSSSHHH
T ss_pred hHHHHHHHHHhHHHHHHHHH----HHHHHH-----------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776543 433333 333444444444443333334456666777777
Q ss_pred hhhhhhHHhhhhhhh
Q 000199 1425 EYKSRAETMADNYGE 1439 (1872)
Q Consensus 1425 E~Kqr~E~~l~~~~E 1439 (1872)
+...+.+..-..++-
T Consensus 838 e~~e~~~~~e~~l~~ 852 (859)
T PF01576_consen 838 EAEERAEAAERELNK 852 (859)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555444443
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.13 E-value=0.11 Score=69.77 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhcccc
Q 000199 698 KTLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDV 777 (1872)
Q Consensus 698 ~~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~~l~e~~~~~i~kc~d~a~~nq~lea~lq~~ 777 (1872)
..+++.+-+....+.-....+..+..++....+..+.+..++.....++..+.+....+-..|.+.-.+=--|++.++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666777777777777777777788888888888888887777775555555443333344444433
Q ss_pred c
Q 000199 778 T 778 (1872)
Q Consensus 778 ~ 778 (1872)
.
T Consensus 459 ~ 459 (1163)
T COG1196 459 R 459 (1163)
T ss_pred H
Confidence 3
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.08 E-value=0.15 Score=69.09 Aligned_cols=532 Identities=18% Similarity=0.254 Sum_probs=236.7
Q ss_pred HHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhh
Q 000199 917 RQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQR 996 (1872)
Q Consensus 917 l~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~ 996 (1872)
-++-++...+..........+...+.+.-..+.+|..++..+...+..=+.-|..++..-...- ..+ +.++...+ ..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye-~~~-i~~~~~~~-~~ 353 (1201)
T PF12128_consen 277 QQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE-DAD-IEQLIARV-DQ 353 (1201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-HHHHHHHH-Hh
Confidence 3444455555555555555555566666666666666666666666555555555554443331 111 12222222 22
Q ss_pred hhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHhHHH
Q 000199 997 HTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEE-SVKLALEVDSFKQ 1075 (1872)
Q Consensus 997 ~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ee-s~~~~~El~slK~ 1075 (1872)
=+++...+..+..++..|+++..|+..+.-.+-... +.........+++-..++++--.. -..+-..+.-+..
T Consensus 354 l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~ 427 (1201)
T PF12128_consen 354 LPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL------EEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQ 427 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777888888777777766543322 222333444444445544443222 2222223333333
Q ss_pred hhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhh--h-hHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHH
Q 000199 1076 SFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLD--F-DQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAV 1152 (1872)
Q Consensus 1076 s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~s--f-d~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~ 1152 (1872)
.++.-+.. ..+.+......+..++...+..+.+ + ..+..++ +.....++.+..-..........+. .
T Consensus 428 ~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~ 497 (1201)
T PF12128_consen 428 ELRQQSQE------QLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQL-EQADKRLEQAQEQQNQAQQAVEELQ---A 497 (1201)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 33322111 1233334444444444444444433 1 2222222 2221222111111111111111111 2
Q ss_pred HHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhh-hhhHHHHHHHHHhhhH--------HHHHHH
Q 000199 1153 ELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQ-QNSEMIQKIAELTSEN--------QALMVS 1223 (1872)
Q Consensus 1153 t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~-enSeL~~~~~~L~~en--------~a~mv~ 1223 (1872)
...+++..-+....+|+..+.....++..+.++..+|........+|-. +.-.|...|-.++++- +.+...
T Consensus 498 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~ 577 (1201)
T PF12128_consen 498 EEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVED 577 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCC
Confidence 2233344444455667777777777777777777777665555555543 3567888888864432 111100
Q ss_pred H-hHhH-----HHhh----hhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHH
Q 000199 1224 L-QEYA-----EESS----RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQL 1293 (1872)
Q Consensus 1224 L-~d~k-----ee~a----q~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~L 1293 (1872)
- .+.= +-++ -++.+-..|++-+..+...|.......++++...... ...+..+
T Consensus 578 ~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~-----------------~~~~~~~ 640 (1201)
T PF12128_consen 578 SGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI-----------------NKKIEEL 640 (1201)
T ss_pred CcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 0 0000 1111 1222223344444444444443333333333322222 2223333
Q ss_pred HHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHH
Q 000199 1294 KLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETV 1373 (1872)
Q Consensus 1294 k~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaede 1373 (1872)
+..+...+.+...... ....|..+...++..+.. .+.=.+.+.+..++.+..++...+....++...+.+...+
T Consensus 641 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e 714 (1201)
T PF12128_consen 641 KREITQAEQELKQAEQ---DLQRLKNEREQLKQEIEE---AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKE 714 (1201)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332111 112333333333322221 2333466777888888888888888777777776666555
Q ss_pred HhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhh-hhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHH-
Q 000199 1374 LNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN-SLIAQSEEYKSRAETMADNYGEHKSQLALEVERM- 1451 (1872)
Q Consensus 1374 ln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand-~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~l- 1451 (1872)
++.-++. ......+.+...|..+..++++..++...-+.+++ ....||. -+-=|.+.+..|..+-.++..+|...
T Consensus 715 ~~~e~~~--~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~-~~GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 715 LRNELKA--QWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA-GKGVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543332 22333344444444444444444333222221111 0112221 11112334444444433333333322
Q ss_pred --HHhhhccHHHHhhh-------hhhhhhHHHHHHHHHHHHHhhhHHHhcc
Q 000199 1452 --KQLLVGSEEEIDDL-------MMSREELEIKVVVLKAKLAEQHAQVISS 1493 (1872)
Q Consensus 1452 --K~LL~~~eeeid~l-------~~~k~e~ei~~~vlk~kl~e~~~~i~~~ 1493 (1872)
+..+..|+.-.... +--+.+++..+-.++.++.+...++..+
T Consensus 792 ~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 842 (1201)
T PF12128_consen 792 ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQL 842 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333 3346666666666666666655554444
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.06 E-value=0.12 Score=67.28 Aligned_cols=144 Identities=20% Similarity=0.249 Sum_probs=81.4
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhHH--------HHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHH
Q 000199 790 EWESLMMDFKSFQSKYEAIAAEKTE--------LANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTI 861 (1872)
Q Consensus 790 e~e~~v~e~~~~esky~ac~~e~~~--------l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~ 861 (1872)
|.+++=.+|..-.++..++..+... -..+-+.++-+-.-+++++..++.+...+..+.+.|..== -.|.-+
T Consensus 11 E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~ 89 (775)
T PF10174_consen 11 ENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQREL 89 (775)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHH
Confidence 3344444444555555555555433 3455566666667777777777776665555554443322 333334
Q ss_pred HHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccc
Q 000199 862 NNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSE 941 (1872)
Q Consensus 862 ~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~ae 941 (1872)
+.|+..+.+-=..|+ +.-. |+ .+++-+.+|..|++.+.-|-+.++..+..++
T Consensus 90 ~rL~~~~e~~~~e~e-----------------------~l~~-ld----~~~~q~~rl~~E~er~~~El~~lr~~lE~~q 141 (775)
T PF10174_consen 90 NRLQQELEKAQYEFE-----------------------SLQE-LD----KAQEQFERLQAERERLQRELERLRKTLEELQ 141 (775)
T ss_pred HHHHHHhhhcccccc-----------------------hhhh-hh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332111111 0000 22 3566677888888888888888888888888
Q ss_pred hhHHHHHH---HHHhhHHhhhhhh
Q 000199 942 SDIVLVKQ---KFEHDLRNMIDKQ 962 (1872)
Q Consensus 942 s~~~~~kq---k~e~d~~~m~~kl 962 (1872)
..+.-++| ++.-.|+-|.+.|
T Consensus 142 ~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 142 LRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777665 4455555565554
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.99 E-value=0.2 Score=67.77 Aligned_cols=195 Identities=14% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhcc-chHHHHhHhhh
Q 000199 918 QLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKV-SSEVEENNAQR 996 (1872)
Q Consensus 918 ~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~-~se~ee~y~~~ 996 (1872)
........+..+...++..++.-.+.+.++.+||...++.....++- ....++.....+-....- -...++.|...
T Consensus 349 ~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~---~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l 425 (1201)
T PF12128_consen 349 ARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR---QQERLQAQQDEIREEKAERREQIEEEYQAL 425 (1201)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566666666666677777777766666555532 222222222222111110 22233333333
Q ss_pred hhccc----cchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHH---hhcchhHHHHHHHH
Q 000199 997 HTDLF----SDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVA---LQDKSEESVKLALE 1069 (1872)
Q Consensus 997 ~~~l~----s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~s---lqdk~ees~~~~~E 1069 (1872)
..++- ..++.+..++..+.+. +-.+.+-.....-+.....++..-..++-.. ..-....-..+-.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 498 (1201)
T PF12128_consen 426 EQELRQQSQEQLEELQEQREQLKSE-------LAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAE 498 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2333333333333332 2222222222222222222222222222111 11112233445567
Q ss_pred HHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1070 VDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1070 l~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
...++.-++....++...+.-.+.+...+.++-..|+...-+|..|-.++..=
T Consensus 499 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~ 551 (1201)
T PF12128_consen 499 EQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPG 551 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCc
Confidence 78888888999999999999999999999999999999999999998777443
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.37 Score=64.18 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=93.6
Q ss_pred hhhhhhhHHHHHHH--HhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHH-----HHHHHHHHHHH
Q 000199 797 DFKSFQSKYEAIAA--EKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQ-----RTINNLQNKMH 869 (1872)
Q Consensus 797 e~~~~esky~ac~~--e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq-----~~~~~lq~kl~ 869 (1872)
-|++--|+|-.=-. -.++...||..+++---| ++.=.||-|.+.| |.++-.-| -.+..|.+=.+
T Consensus 191 A~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleH--NRFLILQGEVE~I-------A~MKPk~~~e~d~GmLEYLEDIIG 261 (1293)
T KOG0996|consen 191 AFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEH--NRFLILQGEVEQI-------AMMKPKAQTENDEGMLEYLEDIIG 261 (1293)
T ss_pred hhhCCCceEeECCccccHHHHHHHHHhcCCCCcc--ceeeeehhhHHHH-------HhcCCCCCCCCcchHHHHHHHHhc
Confidence 47777788865432 346788999999887665 4555677666654 33332211 23333332111
Q ss_pred HhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHhhhccccchhHH-
Q 000199 870 DMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQ---KIRQLMQEKKALIDEKDRAEMSFSKSESDIV- 945 (1872)
Q Consensus 870 ~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~---kil~l~~ek~~l~~e~d~~~~~~~~aes~~~- 945 (1872)
.+-|-+. +...|-+++-|-+..-+ .+-....||++|+..+..|-.++.+ |-++.
T Consensus 262 --T~ry~~~-------------------I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~k-enel~~ 319 (1293)
T KOG0996|consen 262 --TNRYKEP-------------------IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKK-ENELFR 319 (1293)
T ss_pred --ccccchh-------------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHH
Confidence 1223322 23344455555443333 3445578999999988888776654 33333
Q ss_pred HHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhc
Q 000199 946 LVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLK 984 (1872)
Q Consensus 946 ~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k 984 (1872)
.+-+-|++=+.....|+.--.+.++++.-.+..++-||.
T Consensus 320 ~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~ 358 (1293)
T KOG0996|consen 320 KKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFD 358 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 444556666667777777777777777778877777777
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.77 E-value=0.21 Score=62.35 Aligned_cols=316 Identities=16% Similarity=0.191 Sum_probs=164.4
Q ss_pred hhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHH-------HHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHH
Q 000199 1014 LSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL-------MVALQDKSEESVKLALEVDSFKQSFQSLHDELLV 1086 (1872)
Q Consensus 1014 l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al-------~~slqdk~ees~~~~~El~slK~s~qSLhdEl~a 1086 (1872)
|-+-....+.-+.+|.+|..||.+++.-++-+.++.-+- +.+++...+..-.|..||.-+|++|.|.|---.-
T Consensus 118 le~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~e 197 (522)
T PF05701_consen 118 LESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIE 197 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446677888899999999999998888776654332 3344555555666778888888888887532111
Q ss_pred HHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhh
Q 000199 1087 ERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHD 1166 (1872)
Q Consensus 1087 ersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~ 1166 (1872)
. .+.-..+..+.+.... .....++.+...+..|...- ...++|.-
T Consensus 198 A-------eee~~~~~~~~~~~~~--------------~~~~~leeae~~l~~L~~e~--------------~~~k~Le~ 242 (522)
T PF05701_consen 198 A-------EEERIEIAAEREQDAE--------------EWEKELEEAEEELEELKEEL--------------EAAKDLES 242 (522)
T ss_pred H-------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 1 1111111111111111 11111111111111111111 01111111
Q ss_pred hhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHH
Q 000199 1167 ELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQ 1246 (1872)
Q Consensus 1167 eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~ 1246 (1872)
+|.....+...|| .++...+...+..+.+--.....+...+.++..+=......|+.-+++.+.+...+..|+.-|.
T Consensus 243 kL~~a~~~l~~Lq---~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 243 KLAEASAELESLQ---AELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 1222222222222223333344444455555555555566666666665566666666666666
Q ss_pred HHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHh
Q 000199 1247 SLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHE 1326 (1872)
Q Consensus 1247 Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke 1326 (1872)
....++..++---....+.|..|..+|+..+..|...-.-. ..-+.... +|...|.++..
T Consensus 320 ~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e---~~~k~~~~-----------------~l~~~Lqql~~ 379 (522)
T PF05701_consen 320 KEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE---EKAKEAMS-----------------ELPKALQQLSS 379 (522)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh---cchhhhHH-----------------HHHHHHHHHHH
Confidence 66665555555445666777777777777665552221000 11122222 34444444443
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHH
Q 000199 1327 LLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARL 1391 (1872)
Q Consensus 1327 ~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL 1391 (1872)
-+..+ -....-....+..++..+.-++-.+..+..+++-|..+++.-+++|+--+....-|
T Consensus 380 Eae~A----k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 380 EAEEA----KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222 12333345567888889999999999999999999999999999998766554443
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.70 E-value=0.013 Score=67.12 Aligned_cols=291 Identities=20% Similarity=0.295 Sum_probs=159.4
Q ss_pred hhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhHHH-hhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhch
Q 000199 1198 DFDQQNSEMIQKIAE---LTSENQALMVSLQEYAEE-SSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1872)
Q Consensus 1198 e~~~enSeL~~~~~~---L~~en~a~mv~L~d~kee-~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skL 1273 (1872)
+...+|..|.+||+. |..+|..+-..+...+.. +....+.-.....-|..++..|+....-+..++..+..+...+
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 345677778888877 577888888888777755 3444445555666666777777777666666666666666666
Q ss_pred hhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhh----hhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000199 1274 NEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRAS----EESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEEL 1349 (1872)
Q Consensus 1274 dEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~----~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL 1349 (1872)
++.+.++... .....+++.++.... ..+-.-..|..++.-|+ -.+.|.+..|+..+.+|
T Consensus 85 ~~~r~k~e~e----------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~-------eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 85 EDLRRKYEEE----------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLK-------EELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH-------HHHHHHHhhhhhhhhhh
Confidence 5554444211 222222222222111 00000001222222222 22345555555555555
Q ss_pred HHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhh
Q 000199 1350 VQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1872)
Q Consensus 1350 ~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1872)
..|+. +.. .-++... ....|...|.+++++.++.+..+|.=+.++= ...+++-.
T Consensus 148 ~~~~~-~~~------------~~e~~~~---------~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y--~~k~~~l~-- 201 (312)
T PF00038_consen 148 REQIQ-SSV------------TVEVDQF---------RSSDLSAALREIRAQYEEIAQKNREELEEWY--QSKLEELR-- 201 (312)
T ss_dssp STT--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--
T ss_pred hhccc-ccc------------ceeeccc---------ccccchhhhhhHHHHHHHHHhhhhhhhhhhc--cccccccc--
Confidence 55443 110 0111111 1233888888899998888888775333221 12222222
Q ss_pred hHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHH
Q 000199 1430 AETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNE 1509 (1872)
Q Consensus 1430 ~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~e 1509 (1872)
.........-.....|+..++.-+.++..+|+.|...++.+|=.+.-+...++.. .+.+...+..+..+..+
T Consensus 202 --~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~------~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 202 --QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE------REEYQAEIAELEEELAE 273 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH------HHHHHHhhhccchhHHH
Confidence 2233344444666778888999999999999998888888877777777777665 46667778888888888
Q ss_pred HHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhh
Q 000199 1510 LRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLH 1546 (1872)
Q Consensus 1510 l~qklseqilkteefknlsihlkelkdkaeaec~~~~ 1546 (1872)
+...++.|+-.-++-=| +|=.-|+|+..-|
T Consensus 274 l~~~~~~~~~ey~~Ll~-------~K~~Ld~EIatYR 303 (312)
T PF00038_consen 274 LREEMARQLREYQELLD-------VKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHH
Confidence 88888888765444333 3334455554443
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.28 Score=63.03 Aligned_cols=382 Identities=18% Similarity=0.252 Sum_probs=206.6
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhh---cc
Q 000199 799 KSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLS---SY 875 (1872)
Q Consensus 799 ~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~---sy 875 (1872)
..-+.+|..|..+...+....+..-.+++. |..++.++..|+|.-.++........+++.++=. ++
T Consensus 230 ~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-----------~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~l 298 (698)
T KOG0978|consen 230 IKLEEKLAQCVKEYEMLRKEFENNKSQNDL-----------FSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKL 298 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 566778888888888887776665555543 2223333333333322222222221111111111 00
Q ss_pred cCCcccc--cccccccccc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh---hccccchhHHH-
Q 000199 876 GESFSEL--CLHNKSADQN---LESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEM---SFSKSESDIVL- 946 (1872)
Q Consensus 876 ~~~~~~l--~l~~~s~~~d---l~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~---~~~~aes~~~~- 946 (1872)
-..++++ .+...+..+. ....|++. ++..++...=++.....++++.+..+++.-.. .+..+++++..
T Consensus 299 r~~~~s~~~~~~~~~~~~e~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~ 375 (698)
T KOG0978|consen 299 RKQHSSAADSLESKSRDLESLLDKIQDLIS---QEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKT 375 (698)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 0111110 0111122221 23344444 56666656666677778888888887765432 34556666555
Q ss_pred HHHHHHhhHHhhhhhhhccHHHH----HHHHHHHHHHhhhhccchHHHHhHhh--hhhccccchhHHHHHHHHhhhccHH
Q 000199 947 VKQKFEHDLRNMIDKQSVSNALL----QKLQLRFEAVADKLKVSSEVEENNAQ--RHTDLFSDLDYLEVELQQLSSKNRD 1020 (1872)
Q Consensus 947 ~kqk~e~d~~~m~~kl~~s~~l~----qklq~~~e~~~~k~k~~se~ee~y~~--~~~~l~s~l~~~e~elq~l~s~n~~ 1020 (1872)
|+-.++- +. +++.... .|+-.++++.-.++++-.+++-.=-. .+.+...++++.+.+..+|.+++..
T Consensus 376 ~~~~le~-~k------~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~ 448 (698)
T KOG0978|consen 376 NELRLEM-LK------SLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKN 448 (698)
T ss_pred HHHHHHH-Hh------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4333332 21 1222222 36778888888888888776654433 4555556688888888888777766
Q ss_pred HHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhH
Q 000199 1021 LAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSD 1100 (1872)
Q Consensus 1021 l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsd 1100 (1872)
.. +..+|+..+..+..+..+.|..|++.+--+...-.++.+|-.+..+- |+. +|.....++..+.+
T Consensus 449 ~k-------~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~----~k~---L~~ek~~l~~~i~~ 514 (698)
T KOG0978|consen 449 FK-------CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQK----HKL---LREEKSKLEEQILT 514 (698)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHH
Confidence 55 66677788888899999999999999999999999999998776655 333 33344445555555
Q ss_pred hhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHh
Q 000199 1101 ITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKS 1180 (1872)
Q Consensus 1101 LaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQs 1180 (1872)
+.+.-+-.+.-+..+..+-..| .+...+...++..+-.-+..+...+.++...++.+....+..++
T Consensus 515 l~~~~~~~~~~i~~leeq~~~l--------------t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~ 580 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGL--------------TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA 580 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444343333332222 22222333333333223333444445555555544444444444
Q ss_pred hhhhhHHHHH-------HHHHhhhhhhhhhhHHHHHHHHH------hhhHHHHHHHHhHhHH
Q 000199 1181 RAIDISSQLN-------EKQQQLIDFDQQNSEMIQKIAEL------TSENQALMVSLQEYAE 1229 (1872)
Q Consensus 1181 k~~Dves~Ln-------~~~~~e~e~~~enSeL~~~~~~L------~~en~a~mv~L~d~ke 1229 (1872)
+-.|++...+ .---+--+.-++.+.|...+.-+ .+.-+.+..++.+||+
T Consensus 581 ~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 581 KLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 4444444333 33333333334444444444443 3445677788888873
No 28
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.63 E-value=0.45 Score=60.71 Aligned_cols=428 Identities=24% Similarity=0.275 Sum_probs=222.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhh
Q 000199 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1872)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk 1276 (1872)
....-..+.|.+.-..+..-+++.-+.+++-...-++|++++..++....+|.+=|..+.--=..++-....|+-.|..+
T Consensus 310 ~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkk 389 (786)
T PF05483_consen 310 STQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKK 389 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444455666665556666666666666667777889999999988888877655444332222332333333333333
Q ss_pred hhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000199 1277 HCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYST 1356 (1872)
Q Consensus 1277 ~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~S 1356 (1872)
.++.-+-+..-.+=.-+|.+|++.+...+ ++.-.+.|++.-.++|.+-=..-
T Consensus 390 ---------------------------s~eleEmtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eqel 441 (786)
T PF05483_consen 390 ---------------------------SSELEEMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQEL 441 (786)
T ss_pred ---------------------------hHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111111112233445554443333 45555556665555555544444
Q ss_pred hhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHH-------HHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhh
Q 000199 1357 DRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLD-------TLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1872)
Q Consensus 1357 kk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~-------eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1872)
.+.+---+++..|.+..|..-.-+|-.|.+.+++|-+-+. +|-+-.....-+++.+.-.-..|..++....-.
T Consensus 442 ~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 442 TGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555666666666666666666666666655555333 122222333344444444444455555422111
Q ss_pred hHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHh--hhHHHhcc--ccchhHHHHHHH
Q 000199 1430 AETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAE--QHAQVISS--EGYIDEQKMLQN 1505 (1872)
Q Consensus 1430 ~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e--~~~~i~~~--~~~~~el~~l~~ 1505 (1872)
..+. .-.++ ++-.+|+.|.+-=..+- ..|-.-|+++..+.--++.||+. ..++++.+ -+-.-.+..|.+
T Consensus 522 i~~~--k~qee--~~~kqie~Lee~~~~Lr---neles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~len 594 (786)
T PF05483_consen 522 INNS--KKQEE--KMLKQIENLEETNTQLR---NELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILEN 594 (786)
T ss_pred HHHH--HHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHH
Confidence 1110 11111 22222222222111111 33445677777777777777764 44555555 444556778889
Q ss_pred HhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhhhhcccCCCcchhhhhhHHHHHHHHhHHHHHHhhhhhccc
Q 000199 1506 QCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLHEKRESEGLPTGMQESLRIAFIKEQCETKVQELKHHLSIS 1585 (1872)
Q Consensus 1506 ~~~el~qklseqilkteefknlsihlkelkdkaeaec~~~~ek~e~eg~~~amqeslriafikeq~etk~qelk~qlsis 1585 (1872)
.||-|......-.=--|+ |---=|-||-+--||-.+ + .+|+.+|-.|+-.+-=-
T Consensus 595 k~~~LrKqvEnk~K~iee---LqqeNk~LKKk~~aE~kq-------------------~----~~~eikVn~L~~E~e~~ 648 (786)
T PF05483_consen 595 KCNNLRKQVENKNKNIEE---LQQENKALKKKITAESKQ-------------------S----NVYEIKVNKLQEELENL 648 (786)
T ss_pred HHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH-------------------H----HHHHHHHHHHHHHHHHH
Confidence 999988755422111111 111112334444442211 1 47999999999999888
Q ss_pred hhhhHHHHHHHHHhhh-----------HHhhhhhhhhhhhhhhhhhh----hhHHHHHHHHhhhhhhhhhhhhhhHhhhh
Q 000199 1586 KKHSEEMLWKLQDAID-----------EIENRKKSEAAHLKKNEELG----VKILELEAELQSLISDKREKTKAYDLAKA 1650 (1872)
Q Consensus 1586 KkhsEeml~KLqdaid-----------e~e~rkKsea~~lK~~eEL~----~kilElEaelq~~~sdKRe~~~aYD~~ka 1650 (1872)
|++-+||.-++|.-|. ||+..|-.=.--+|--+|-. -||.+|=|=|--- -.-||.|.-
T Consensus 649 kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKH-------K~qYDkiVE 721 (786)
T PF05483_consen 649 KKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKH-------KHQYDKIVE 721 (786)
T ss_pred HhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHH
Confidence 9999999999998654 45555443333333334433 3555554444211 246999998
Q ss_pred hhhccccchhhhHHHHHH-HHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 000199 1651 ELECSLMSLECCKEEKEK-LEVSLHECNEEKSRLYSDLSLMKKLLYS 1696 (1872)
Q Consensus 1651 e~eCsl~sleCCkeEKqk-lEasL~eC~eE~~ki~~el~~~keLle~ 1696 (1872)
|-+--| ++-=-||.-|- ..+||. -|-+.+..||.++|+=|+.
T Consensus 722 EkDaEL-~~~k~KE~E~~s~k~sLE---~ELs~lk~el~slK~QLk~ 764 (786)
T PF05483_consen 722 EKDAEL-GLYKKKEQEQSSHKASLE---LELSNLKNELSSLKKQLKT 764 (786)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 876432 22222332221 222332 3567788888888876653
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.54 E-value=0.039 Score=63.21 Aligned_cols=293 Identities=24% Similarity=0.288 Sum_probs=156.2
Q ss_pred hhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhh
Q 000199 745 DIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESL 824 (1872)
Q Consensus 745 ~~~~l~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l 824 (1872)
+...||.-=|+||-|-..+=-+|+.|++.+ ..|..-+ ......-+..+..+-..+...+..-+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i--------------~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~ 68 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEI--------------EELREKK--GEEVSRIKEMYEEELRELRRQIDDLSK 68 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-----------HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------------HHHHhcc--cccCcccccchhhHHHHhHHhhhhHHH
Confidence 456788888999999888877777777554 4444332 222233355666788889999999999
Q ss_pred hcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHH
Q 000199 825 ENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMR 904 (1872)
Q Consensus 825 ~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~ 904 (1872)
+++.+.-++..++.+++.+|.++.+....+.+++.-+..|. +++....+.
T Consensus 69 eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr------------------------------k~ld~~~~~ 118 (312)
T PF00038_consen 69 EKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR------------------------------KDLDEETLA 118 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHH
T ss_pred HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------------------hhhhhhhhh
Confidence 99999999999999999999999999888888888888777 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhh
Q 000199 905 LEVLQRNACQKIRQLMQEKKALI--DEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADK 982 (1872)
Q Consensus 905 le~~q~~~c~kil~l~~ek~~l~--~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k 982 (1872)
--.|+. +|-.|.+|...+. |+.++....-..+....+.++.-|..|+. .+ |..+..+++.++.+
T Consensus 119 r~~le~----~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~---------~~-L~eiR~~ye~~~~~ 184 (312)
T PF00038_consen 119 RVDLEN----QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLS---------AA-LREIRAQYEEIAQK 184 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSTT----------------HH---------HH-HHHHHHHHHHHHHH
T ss_pred HhHHHH----HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccch---------hh-hhhHHHHHHHHHhh
Confidence 222221 2333444433332 33333332222224444555555555533 22 35567778888887
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhH
Q 000199 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEE 1062 (1872)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ee 1062 (1872)
.+ .+++..|..+-.++......-...+ ..+..|+..+-..+|.-.-+
T Consensus 185 ~~--~e~e~~y~~k~~~l~~~~~~~~~~~-------------------------------~~~~~E~~~~r~~~~~l~~e 231 (312)
T PF00038_consen 185 NR--EELEEWYQSKLEELRQQSEKSSEEL-------------------------------ESAKEELKELRRQIQSLQAE 231 (312)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hh--hhhhhhccccccccccccccccccc-------------------------------chhHhHHHHHHhhhhHhhhh
Confidence 77 4677777665443333222222222 12222222222222222222
Q ss_pred HHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHH-HHHhhhHhh
Q 000199 1063 SVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQ-KTAVLTKEN 1133 (1872)
Q Consensus 1063 s~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~-~~~~dlEea 1133 (1872)
-..+-....+|...+..+......+ .++....++++=.++......+...-.+.+.||. ++.-++|=+
T Consensus 232 l~~l~~~~~~Le~~l~~le~~~~~~---~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 232 LESLRAKNASLERQLRELEQRLDEE---REEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhhhhHHHHHHHHHHH---HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2222233333444433333333322 3445555666777777777777777777777754 455454443
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.40 E-value=0.24 Score=62.31 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHH
Q 000199 1050 RALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1872)
Q Consensus 1050 ~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1872)
|.+-.-+|-.......++.||.++..-=+..+-+||..|--..++.-.+++.+.+|-+-. -.++++++.|.
T Consensus 293 r~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~---~q~~qEk~~l~ 363 (546)
T PF07888_consen 293 RSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR---SQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333333444457788899999999888889999999999888888888888887774433 34456666554
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.30 E-value=0.94 Score=56.81 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhh
Q 000199 1025 ILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQ 1104 (1872)
Q Consensus 1025 i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSE 1104 (1872)
-..|.-+-.++.++|.-+. .+.-+..+...||++-|....-|+..|.........-.+++
T Consensus 33 e~eL~~~qeel~~~k~~l~--------------~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~------ 92 (522)
T PF05701_consen 33 ETELEKAQEELAKLKEQLE--------------AAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDS------ 92 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 3345555555555554443 34455677788888888887777766665444333222211
Q ss_pred hhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhh
Q 000199 1105 LSAKHSQLLDFDQQKSEL--IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRA 1182 (1872)
Q Consensus 1105 L~eK~~sL~sfd~enqeL--l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~ 1182 (1872)
...+.++ |++-........ .=.+|-+-++.|...+.++.+.+.-|+.+..++.+...-...-.+..
T Consensus 93 -----------e~~k~r~~e~e~~~~~~~~~~-~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~a 160 (522)
T PF05701_consen 93 -----------ELAKFRAKELEQGIAEEASVA-WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQA 160 (522)
T ss_pred -----------HHhHHHHHHHhhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 111111100000 11234445566667777777777777777777777666666666666
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000199 1183 IDISSQLNEKQQQLIDFDQQNSEMIQKIAE 1212 (1872)
Q Consensus 1183 ~Dves~Ln~~~~~e~e~~~enSeL~~~~~~ 1212 (1872)
.+....++...-+-.+...+...+.-.+++
T Consensus 161 eea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 161 EEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655554444444444444444444
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=1.2 Score=57.81 Aligned_cols=344 Identities=21% Similarity=0.201 Sum_probs=178.5
Q ss_pred HHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhh-
Q 000199 950 KFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILAL- 1028 (1872)
Q Consensus 950 k~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l- 1028 (1872)
.+++=+..+..++.-.....-+|...+.+-++.+--.+...+..-..-.++.+.++.+.. -+.++++..++++.-+
T Consensus 276 e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 352 (698)
T KOG0978|consen 276 EHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSK---KLRSKLLESAKKLKILL 352 (698)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHH
Confidence 344444444555444444444555555554444433333333333333344433333332 5566666655554433
Q ss_pred hhHHhhhhh---hhhhHHHHHHHHHHHHHHhhcchhHH-----HHHHHHHHhHHHhhHhhHHHHHHHHH--hhhhHHHHH
Q 000199 1029 QVVTEEFDR---SKQTISELTEENRALMVALQDKSEES-----VKLALEVDSFKQSFQSLHDELLVERS--LRDDLKSAV 1098 (1872)
Q Consensus 1029 ~~v~~E~~~---tK~~~~el~~En~al~~slqdk~ees-----~~~~~El~slK~s~qSLhdEl~aers--l~edl~~~v 1098 (1872)
..+..|... +...-.++...|++.+..+-....+- ++.+.|++++-+-+--+.....++++ -.++.+...
T Consensus 353 ~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~ 432 (698)
T KOG0978|consen 353 REKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQI 432 (698)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence 333333333 23333555565777766665544333 46999999999999999999999988 447778877
Q ss_pred hHhhhhhhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhh-hHHhhhhhhHHHHHHHHHH---H----hHhhhhhhhhhhh
Q 000199 1099 SDITSQLSAKHSQLLDFDQQKSEL--IQKTAVLTKENQD-LMVSLQNKSEEAAKLAVEL---D----SVRNSLQSVHDEL 1168 (1872)
Q Consensus 1099 sdLaSEL~eK~~sL~sfd~enqeL--l~~~~~dlEea~s-l~~~Lls~sEe~~k~a~t~---~----q~e~~lqeL~~eL 1168 (1872)
.+.+++..++.....+|.+-..++ +-.-..++.+-+. ++.++--.--...++-.+. + -++....-|..+.
T Consensus 433 ~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i 512 (698)
T KOG0978|consen 433 RQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQI 512 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777887777777777777333333 2222233333222 1111111111111111111 1 1555666666666
Q ss_pred hccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHH
Q 000199 1169 HGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSL 1248 (1872)
Q Consensus 1169 ~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl 1248 (1872)
+..-..-+-++.+...++.++.++++..--.+.+-+-+-.+++.+ +-..+-+
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~----------------------------kk~~~e~ 564 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEML----------------------------KKKAQEA 564 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 666677777777777777777777777665555444444333322 2223344
Q ss_pred HHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhccccc----chHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHH
Q 000199 1249 RDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQ----KSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEM 1324 (1872)
Q Consensus 1249 ~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~----~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsEl 1324 (1872)
...++.++.=-+..+.+++++..++++....|..|-.. ..|+.+|+..+..+-..-+ -++-..-|.-+|+++
T Consensus 565 ~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~----~~s~d~~L~EElk~y 640 (698)
T KOG0978|consen 565 KQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES----GASADEVLAEELKEY 640 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccHHHHHHHHHH
Confidence 44455555555666666666666666654444222111 2334444444433332222 122344456666676
Q ss_pred Hhhh
Q 000199 1325 HELL 1328 (1872)
Q Consensus 1325 ke~l 1328 (1872)
+..+
T Consensus 641 K~~L 644 (698)
T KOG0978|consen 641 KELL 644 (698)
T ss_pred Hhce
Confidence 6544
No 33
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.22 E-value=0.00025 Score=89.87 Aligned_cols=192 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhh--------hHHhhhhhhhhhHHHHHHHHHHHHHHhhcchh
Q 000199 990 EENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ--------VVTEEFDRSKQTISELTEENRALMVALQDKSE 1061 (1872)
Q Consensus 990 ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~--------~v~~E~~~tK~~~~el~~En~al~~slqdk~e 1061 (1872)
.+.|+++..++-..++.|..+...|.+.|+.|...+-.++ ....++..++.-+..|.+|+..+.....|-..
T Consensus 188 ~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~ 267 (713)
T PF05622_consen 188 RDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKI 267 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666677777777777766655544 12345566677778888888888777777766
Q ss_pred HHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH--HHHHHhhhHhh-hhhHH
Q 000199 1062 ESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL--IQKTAVLTKEN-QDLMV 1138 (1872)
Q Consensus 1062 es~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL--l~~~~~dlEea-~sl~~ 1138 (1872)
.-..+-.||..|+..-+.|...-...+.+++++.. +-.-+..++-+...+..+.....++ ++..+..+++. +.++.
T Consensus 268 ~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~-lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e 346 (713)
T PF05622_consen 268 ELEELEKEIDELRQENEELQAEAREARALRDELDE-LREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLE 346 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777776666665555555555544332 1111222222222333333333333 22222222222 23344
Q ss_pred hhhhhhHHHHHHH---HHHHhHhhhhhhhhhhhhccccchHHHHhhh
Q 000199 1139 SLQNKSEEAAKLA---VELDSVRNSLQSVHDELHGERSLSDELKSRA 1182 (1872)
Q Consensus 1139 ~Lls~sEe~~k~a---~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~ 1182 (1872)
....+.+++.+.. .....|+.-+.+|+.+++....-.+.+.-.+
T Consensus 347 ~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 347 TKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445444432 2334477777777777777665554444333
No 34
>PRK01156 chromosome segregation protein; Provisional
Probab=97.22 E-value=1.5 Score=57.52 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=15.5
Q ss_pred hhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 000199 1133 NQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG 1170 (1872)
Q Consensus 1133 a~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~ 1170 (1872)
.......+....+++..+.-+..++...++++..++..
T Consensus 344 ~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 381 (895)
T PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEE 381 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444434444444444444444333
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.22 E-value=0.43 Score=60.14 Aligned_cols=125 Identities=17% Similarity=0.300 Sum_probs=77.6
Q ss_pred hhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHH
Q 000199 995 QRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFK 1074 (1872)
Q Consensus 995 ~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK 1074 (1872)
..+.+...++..||.++..++.+....-..+..+..+..++..++. +|...-+..++-++++--....+--|++.||
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~---eLk~rLk~~~~~~~~~~~~~~~~~~e~e~Lk 289 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA---ELKQRLKETVVQLKQEETQAQQLQQENEALK 289 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 4456667777888888877777765555555555555555544431 1122222223333333333344556778899
Q ss_pred HhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1075 QSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1075 ~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
+-|+++.+.+.+-++....+.+.++++.+.-+.-..-|-.-..+...|
T Consensus 290 eqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql 337 (546)
T PF07888_consen 290 EQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQL 337 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999998888888888888888777665555554444555555
No 36
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.18 E-value=0.00025 Score=89.76 Aligned_cols=472 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHhHHHhhHhhH
Q 000199 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKS----EESVKLALEVDSFKQSFQSLH 1081 (1872)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~----ees~~~~~El~slK~s~qSLh 1081 (1872)
.+...+..+......|++...+++.-+..+-. -.+.|..||..+...+..-. ......+.++..|+.-++.|.
T Consensus 176 ~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~---e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~ 252 (713)
T PF05622_consen 176 RMYEELSRLVAERDELAQRCHELEKQISDLQE---EKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLR 252 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 34456667777777777776665543332221 12334455655554433321 223345567777888888888
Q ss_pred HHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhh
Q 000199 1082 DELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL--IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRN 1159 (1872)
Q Consensus 1082 dEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL--l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~ 1159 (1872)
+++...-..+++....+..+..++..+....+++-..-.+. +++-+|-+.+.+. ....+++
T Consensus 253 ~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~-----------------r~~klE~ 315 (713)
T PF05622_consen 253 EELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD-----------------RADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----------------HHHHHHH
Confidence 87776666666666666655555544444333322221111 2222222222222 2222333
Q ss_pred hhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhcccc
Q 000199 1160 SLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGN 1239 (1872)
Q Consensus 1160 ~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~ 1239 (1872)
-++..-.+|++..-+.-.+..+..++...|.....-|.++.. ...+...++.+...+..+-..+.+...+.-....++.
T Consensus 316 ~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~-~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~ 394 (713)
T PF05622_consen 316 EVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK-ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENK 394 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444433 2234444445555555555555555555556677788
Q ss_pred chHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhc------hhhhhhh-hhcccccchHHH--HHHHHHhhhHhhhhhhh--
Q 000199 1240 TSKETLQSLRDELQSERSLRDELKNVVTDLTSQ------LNEKHCQ-LLDLDQQKSELV--QLKLLVLDLESEKSRAS-- 1308 (1872)
Q Consensus 1240 ~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~sk------LdEk~~q-L~~~d~~~~EL~--~Lk~qvsdLese~S~~~-- 1308 (1872)
+|++-+..+..+-..+..-++.|.-++..|..- +..-... -...+.-..|+. .++..+..|+.++....
T Consensus 395 ~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~ 474 (713)
T PF05622_consen 395 QLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEK 474 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666666555555544443211 1000000 001122233442 35666666776666442
Q ss_pred ---hhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHH
Q 000199 1309 ---EESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCN 1385 (1872)
Q Consensus 1309 ---~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~ 1385 (1872)
.+.+.+..|+.+|.+.... +..+++-.....+++......++++++.+++..+....-..-...+
T Consensus 475 ~e~~~~e~~~~L~~~Leda~~~-----------~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~l- 542 (713)
T PF05622_consen 475 QEESEEEKLEELQSQLEDANRR-----------KEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKL- 542 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-
Confidence 1224445555555544321 2233333334444444444445555555544333222100000011
Q ss_pred HHhHHHHHhHHHHHHHHHH---HHHHhHHhhhhh-hhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHH
Q 000199 1386 EENARLLTSLDTLRSELDS---AIAENRVLFHEN-NSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEE 1461 (1872)
Q Consensus 1386 keNaeLl~~I~eLesELea---siaekR~L~nan-d~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eee 1461 (1872)
+.-...+.++..+++. .|.+...-.+.. ..-.++|++.=++-+.-+ .-.++|++ .-|+..|.++-+++..
T Consensus 543 ---e~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~-~~~eer~k--~~lekak~vi~~Ld~k 616 (713)
T PF05622_consen 543 ---EEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEM-RAMEERYK--KYLEKAKEVIKTLDPK 616 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHH-HhHHHHHH--HHHHHHHHHhhccChh
Confidence 1111122233333332 111111111111 111233332211111111 22333333 4466778888877777
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhH
Q 000199 1462 IDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLK 1532 (1872)
Q Consensus 1462 id~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qklseqilkteefknlsihlk 1532 (1872)
+.. .-.| +.+|+..|.+....|-.++....+-...+.+ |.=|=+--|-|+...+-
T Consensus 617 ~~~-----~~~e--~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~---------EekLi~sa~y~~g~~~~ 671 (713)
T PF05622_consen 617 QNP-----SSPE--IQALKKQLQEKDRRIESLEKELEKSKQMREQ---------EEKLIVSAWYNLGMRLH 671 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccC-----ChHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---------HHHHHHHHHHHHHHHHH
Confidence 766 2223 3478888888888887777666544433332 22233336777766554
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.15 E-value=0.1 Score=65.43 Aligned_cols=204 Identities=21% Similarity=0.260 Sum_probs=148.1
Q ss_pred hhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHH-hhhHhhhhhhhhh
Q 000199 1232 SRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV-LDLESEKSRASEE 1310 (1872)
Q Consensus 1232 aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qv-sdLese~S~~~~k 1310 (1872)
..+-.++.+|...|...+-++|+++++|-.++.+|.+|...|+=+. -.|+.|+..+.... -|.+.++.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~------~~h~~eI~e~~~~~~rd~t~~~r----- 240 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK------RIHKQEIEEERRKARRDTTADNR----- 240 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------hccHHHHHHHHHHHhhcccccch-----
Confidence 4466678899999999999999999999999999999998887663 35666776655443 34443333
Q ss_pred ccccch-hhHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHH--------------HHHhhchhhHHHHHhhhccHHHHH
Q 000199 1311 SSSVTS-LQSELSEMHELLLAVDVRLIF-TRTQYEAWVEELV--------------QQVYSTDRLLTELHTKNVDVETVL 1374 (1872)
Q Consensus 1311 tsef~~-Ls~hLsElke~l~A~dvriiF-~KeQYEtkvqEL~--------------qQL~~Skk~~eElq~K~qDaedel 1374 (1872)
.+|++ |...+.||.+--++-+-+--- +-.=|..+|++.+ .-|...+.-+..|..|+.|++
T Consensus 241 -~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE--- 316 (546)
T KOG0977|consen 241 -EYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE--- 316 (546)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc---
Confidence 33432 666677777665552221110 1235788888888 445555555556666666555
Q ss_pred hHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHh
Q 000199 1375 NSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQL 1454 (1872)
Q Consensus 1375 n~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~L 1454 (1872)
.+|.-|...|..|+..|.-=..--+..++..|.-.++|-++=+.+-..++...+-|-.+..|+..-+.|
T Consensus 317 -----------~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 317 -----------SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL 385 (546)
T ss_pred -----------ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence 468888888888888776555555666677777777888888899999999999999999999999999
Q ss_pred hhccHHH
Q 000199 1455 LVGSEEE 1461 (1872)
Q Consensus 1455 L~~~eee 1461 (1872)
|.|-|+-
T Consensus 386 Legee~r 392 (546)
T KOG0977|consen 386 LEGEEER 392 (546)
T ss_pred hccccCC
Confidence 9998876
No 38
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.05 E-value=1.9 Score=55.44 Aligned_cols=445 Identities=20% Similarity=0.216 Sum_probs=203.2
Q ss_pred HhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHH----HHHHHHhhhhH
Q 000199 956 RNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRD----LAQEILALQVV 1031 (1872)
Q Consensus 956 ~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~----l~~~i~~l~~v 1031 (1872)
+.|+.-|-.-++-|-|-|+.-..||.||.+-----+..--.+|++.+.| +-|++.|.+-=++ =-.-+-.+.-.
T Consensus 452 dE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L---~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 452 DEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKL---QSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5677777777888889999999999999875443344445566665544 3444443331111 11112233333
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHH--------HHHHhhhhHHHHHhHhhh
Q 000199 1032 TEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELL--------VERSLRDDLKSAVSDITS 1103 (1872)
Q Consensus 1032 ~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~--------aersl~edl~~~vsdLaS 1103 (1872)
..|+.|-|.-.+. -|++|..++.+. -++..+|+++..-+| ..|.-.+-+...|++|--
T Consensus 529 ~ae~~rq~~~~~~----sr~~~~~le~~~----------~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~ 594 (961)
T KOG4673|consen 529 QAELTRQKDYYSN----SRALAAALEAQA----------LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQ 594 (961)
T ss_pred HHHHHHHHHhhhh----HHHHHHHHHHHH----------HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444433332 134444443322 122333333333222 223344556666777766
Q ss_pred hhhhhhhhh----hhhhHhhHHHHHHHHhhhHhhhhhHHhh-------hhhhHHHHHHHHHHHhHhhhhhhhhhhhhccc
Q 000199 1104 QLSAKHSQL----LDFDQQKSELIQKTAVLTKENQDLMVSL-------QNKSEEAAKLAVELDSVRNSLQSVHDELHGER 1172 (1872)
Q Consensus 1104 EL~eK~~sL----~sfd~enqeLl~~~~~dlEea~sl~~~L-------ls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~ 1172 (1872)
.|.-+.++. +-|.-++-.|++-...-.-.+..++.++ +++-|.+..- |..+ +.-
T Consensus 595 ~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~t-------------l~~~--~ta 659 (961)
T KOG4673|consen 595 TLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQET-------------LSKA--ATA 659 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH-------------Hhhh--hhH
Confidence 666665554 3345555555555444444444433332 2222222211 1111 111
Q ss_pred cch--HHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHH----------HHHHhhhHHHHHHHHhHhHHHhhhhhccccc
Q 000199 1173 SLS--DELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQK----------IAELTSENQALMVSLQEYAEESSRLASEGNT 1240 (1872)
Q Consensus 1173 ~~~--e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~----------~~~L~~en~a~mv~L~d~kee~aq~a~e~~~ 1240 (1872)
|-+ -.|-.+-.|-+++|+..+-.+ --+.-+|++. ..+|.-++.++-..+..-+++-+-+-.+...
T Consensus 660 wereE~~l~~rL~dSQtllr~~v~~e---qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~ 736 (961)
T KOG4673|consen 660 WEREERSLNERLSDSQTLLRINVLEE---QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLA 736 (961)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH---hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222 223334445556665555444 1122233332 2335667777777777777665555555555
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-hh-------hcc
Q 000199 1241 SKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-SE-------ESS 1312 (1872)
Q Consensus 1241 Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~-~~-------kts 1312 (1872)
+.+-++.+++++-.+ +..+-.++.+++ +=+. -+|.+.+.--.+++....-+ .+ -++
T Consensus 737 ~qeE~~~l~~r~~~l-------e~e~r~~k~~~~----q~lq-----~~ll~ve~~~k~~e~~~~~~~~lers~a~i~Ss 800 (961)
T KOG4673|consen 737 AQEEADTLEGRANQL-------EVEIRELKRKHK----QELQ-----EVLLHVELIQKDLEREKASRLDLERSTARINSS 800 (961)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHhh-----HHHHHHHHHHHHhhhCHHHHhhcccccCccCCC
Confidence 555555555544322 222222222221 1111 01222222223333322222 11 122
Q ss_pred ccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHH----HhHhhhhhhHHHHHh
Q 000199 1313 SVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETV----LNSCLAREAQCNEEN 1388 (1872)
Q Consensus 1313 ef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaede----ln~~lksEa~~~keN 1388 (1872)
.+.++..-- -..+++...+.|..--+ ++---.++| -.-|+|+|.-++.- .+|.-+-=.+---+-
T Consensus 801 p~~s~~~Sg----Snee~ag~~~~f~~dd~-s~~~s~gqq-------~~~~~~~hl~~~~~nttt~eh~eall~QreGEl 868 (961)
T KOG4673|consen 801 PVSSQLPSG----SNEEIAGQNSAFENDDF-SEKRSMGQQ-------EATMSPYHLKSITPNTTTSEHYEALLRQREGEL 868 (961)
T ss_pred CchhhCCCC----chHhHhcccchhhccch-hhhhcCCCC-------CcccchhHHhhhcCCCchHHHHHHHHHhhcchH
Confidence 111111101 12233444444432111 111111111 12244444433332 111111111111223
Q ss_pred HHHHHhHHHHHHHHH-------H---HHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhh---hhhHHHHHHHHHhh
Q 000199 1389 ARLLTSLDTLRSELD-------S---AIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHK---SQLALEVERMKQLL 1455 (1872)
Q Consensus 1389 aeLl~~I~eLesELe-------a---siaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek---~k~a~Eve~lK~LL 1455 (1872)
+-|.+.|-.|++... - -..+.|+.+..|-.|+++++...||--+.++=|+|.. --+...+.-||.+
T Consensus 869 thlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~m- 947 (961)
T KOG4673|consen 869 THLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEM- 947 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHH-
Confidence 334444444444332 2 2223788999999999999999999999999999874 2334444445543
Q ss_pred hccHHHHhhhh
Q 000199 1456 VGSEEEIDDLM 1466 (1872)
Q Consensus 1456 ~~~eeeid~l~ 1466 (1872)
|.++||.|+
T Consensus 948 --Yk~QIdeLl 956 (961)
T KOG4673|consen 948 --YKEQIDELL 956 (961)
T ss_pred --HHHHHHHHH
Confidence 567777664
No 39
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.94 E-value=0.0031 Score=80.28 Aligned_cols=357 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhh
Q 000199 709 GEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKL 788 (1872)
Q Consensus 709 ~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~~l~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~ 788 (1872)
.++...+.+|..|..++.-..-..+....++..++++.. .+|..-.-+++-|++.++.+...+.-+-.++
T Consensus 61 ~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~----------~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 61 AELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQ----------RQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777766666666666666554432 2444444678888888888877776666655
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHhHHH----HHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHH
Q 000199 789 SEWESLMMDFKSFQSKYEAIAAEKTEL----ANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNL 864 (1872)
Q Consensus 789 ~e~e~~v~e~~~~esky~ac~~e~~~l----~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~l 864 (1872)
.+. ..++.+++.+++ .++..| ..++.. .++.++.+..++..++..+..+-.-...++.-+..+
T Consensus 131 ~~~---~e~~~~~k~~le---~~~~~L~~E~~~~~~e-------~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 131 EEA---EEELEQLKRKLE---EEKRRLQREKEQLLEE-------AREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 456777777763 222222 233322 334444455555555544444444444444444444
Q ss_pred HHHHHHhh---hcccCCcccccccccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------h
Q 000199 865 QNKMHDML---SSYGESFSELCLHNKS-ADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRA------E 934 (1872)
Q Consensus 865 q~kl~~~l---~sy~~~~~~l~l~~~s-~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~------~ 934 (1872)
+..+..+. ..++..+..|.-...+ ..++-..+.|.. +.........+. .
T Consensus 198 ~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~---------------------el~~~~~~~~i~k~l~~ql 256 (722)
T PF05557_consen 198 KEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEA---------------------ELKDQESDAEINKELKEQL 256 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------HHHhHhhHHHHHHHHHHHH
Confidence 44443332 3556666664322111 111222111111 111110000000 0
Q ss_pred hhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHh
Q 000199 935 MSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQL 1014 (1872)
Q Consensus 935 ~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l 1014 (1872)
.++..-|.+...+. +=+.+|--+..=++-|..+..++-.|+..--.++++|+... -....||.++..-
T Consensus 257 ~~i~~LE~en~~l~--------~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq----~e~~~Le~el~sW 324 (722)
T PF05557_consen 257 AHIRELEKENRRLR--------EELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQ----LENEKLEDELNSW 324 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 11111122111111 01112222222233344444444555544444444444321 1223334444433
Q ss_pred hhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhH
Q 000199 1015 SSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDL 1094 (1872)
Q Consensus 1015 ~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl 1094 (1872)
++--.+.+..+..-.+|+..+..+...-+.|++++-.+...+.+....-..+..|+..+.+.+..+...+.+.......+
T Consensus 325 ~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RL 404 (722)
T PF05557_consen 325 ESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRL 404 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555556666666677777777777777666666667777777777766666666666666777
Q ss_pred HHHHhHhhhhhhhhhhhhhhhhHhhHH
Q 000199 1095 KSAVSDITSQLSAKHSQLLDFDQQKSE 1121 (1872)
Q Consensus 1095 ~~~vsdLaSEL~eK~~sL~sfd~enqe 1121 (1872)
+....=.+-|.+.+..+|.+||.+.+.
T Consensus 405 erq~~L~~kE~d~LR~~L~syd~e~~~ 431 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSYDKEETT 431 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 777777888888888888888876543
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.73 E-value=3.5 Score=53.77 Aligned_cols=302 Identities=21% Similarity=0.220 Sum_probs=155.8
Q ss_pred hhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhh
Q 000199 1092 DDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDEL 1168 (1872)
Q Consensus 1092 edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL 1168 (1872)
.-++..+-.+-||+-+++-.++....++|.| .+...+++.++....-.+++ .||..-
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s--------------------rlh~le 154 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS--------------------RLHKLE 154 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------------------HHHHHH
Confidence 3455566666777777777777777777777 66666666666553332222 122222
Q ss_pred hccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHH
Q 000199 1169 HGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSL 1248 (1872)
Q Consensus 1169 ~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl 1248 (1872)
+ +|.-+..|+...-...-..-..+.+.+.++++.+..-..+|.++.--++.+++.+ -+-|-+ .
T Consensus 155 ~-------eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~--~~nD~~---s----- 217 (1265)
T KOG0976|consen 155 D-------ELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDL--IEKDQK---S----- 217 (1265)
T ss_pred H-------HHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchHH---H-----
Confidence 2 2222333333333333444555666677777777766666666666666666541 000100 0
Q ss_pred HHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhh
Q 000199 1249 RDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELL 1328 (1872)
Q Consensus 1249 ~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l 1328 (1872)
-+++...-++-++=..|+.|+++++-+.. -+.-...++.++-||+--.- .++++. --+
T Consensus 218 -le~~~~q~~tq~vl~ev~QLss~~q~ltp-------~rk~~s~i~E~d~~lq~sak-~ieE~m-------------~ql 275 (1265)
T KOG0976|consen 218 -LELHKDQENTQKVLKEVMQLSSQKQTLTP-------LRKTCSMIEEQDMDLQASAK-EIEEKM-------------RQL 275 (1265)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhHhhhhh-------HhhhhHHHHHHHHHHHHHHH-HHHHHH-------------HHH
Confidence 12333344455555666777776554411 11222344444444432221 122211 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 000199 1329 LAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAE 1408 (1872)
Q Consensus 1329 ~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiae 1408 (1872)
.|-.-++-=.+.|+|-.|-++..-|.--+..-..- .+|. -...+.=+ .+|-+|- --.++++-++-+
T Consensus 276 k~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a---~gds---eqatkylh----~enmklt----rqkadirc~LlE 341 (1265)
T KOG0976|consen 276 KAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA---DGDS---EQATKYLH----LENMKLT----RQKADIRCALLE 341 (1265)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hccH---HHHHHHHH----HHHHHHH----HHHHHHHHHHHH
Confidence 22223344455666666665554443222211110 0111 01111111 1233333 334567777778
Q ss_pred hHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhh
Q 000199 1409 NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLM 1466 (1872)
Q Consensus 1409 kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~ 1466 (1872)
-|..+++.|...-|||-..--++.-+++..+-+.--.-|+-+|+.|....+++||.|-
T Consensus 342 arrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 342 ARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999998888887544444445566666666666778888888888888888763
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.64 E-value=0.63 Score=58.75 Aligned_cols=278 Identities=20% Similarity=0.270 Sum_probs=147.7
Q ss_pred hhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhHHH----------------------hhhhhccccchHHHHHHHHHHH
Q 000199 1198 DFDQQNSEMIQKIAE---LTSENQALMVSLQEYAEE----------------------SSRLASEGNTSKETLQSLRDEL 1252 (1872)
Q Consensus 1198 e~~~enSeL~~~~~~---L~~en~a~mv~L~d~kee----------------------~aq~a~e~~~Lk~~L~Sl~eEl 1252 (1872)
++.++|..|..||+. |-.+|..+-..++.-+.. -..-+.+..++...+.-|.+|+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666666666666 466666666666555411 0111222233333333333333
Q ss_pred hhhhh-------hhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHH
Q 000199 1253 QSERS-------LRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1872)
Q Consensus 1253 ~~ers-------lreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElk 1325 (1872)
++++. .+.+....+-+...-|+++ ..|+..+|-....|+-++.+...+++ -|-.+|..++
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~l----------eAe~~~~krr~~~le~e~~~Lk~en~---rl~~~l~~~r 189 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSEL----------EAEINTLKRRIKALEDELKRLKAENS---RLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Confidence 33333 3333333444444444444 45668999999999999997776666 6889999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHhhhccHH-HHHhHhhhhhhHHHHHhHHHHHhHHHHHH
Q 000199 1326 ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDR----LLTELHTKNVDVE-TVLNSCLAREAQCNEENARLLTSLDTLRS 1400 (1872)
Q Consensus 1326 e~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk----~~eElq~K~qDae-deln~~lksEa~~~keNaeLl~~I~eLes 1400 (1872)
..+.++.+. +.-|++.+|.|.+-|...+. -+.|.+.+++-.- ..++...+ .+|..+|.++++
T Consensus 190 ~~ld~Etll----r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~---------~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 190 KQLDDETLL----RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK---------NELALAIREIRA 256 (546)
T ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH---------HHHHHHHHHHHH
Confidence 888886543 34577888888888776652 2333333322111 11111111 245556666666
Q ss_pred HHHHHHHHhHHhhhhhhhhhhhhh-hhhhhhHHh---hhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHH
Q 000199 1401 ELDSAIAENRVLFHENNSLIAQSE-EYKSRAETM---ADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKV 1476 (1872)
Q Consensus 1401 ELeasiaekR~L~nand~~~AElE-E~Kqr~E~~---l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~ 1476 (1872)
+-++-+..+|. ++| -|+.++.++ ....+..-.+..-||.+++.-+.++--.+-+|-..-.-++=.+
T Consensus 257 qye~~~~~nR~----------diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I 326 (546)
T KOG0977|consen 257 QYEAISRQNRK----------DIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRI 326 (546)
T ss_pred HHHHHHHHhHH----------HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHH
Confidence 66666555554 223 233333222 2233333355666777777776666666555544444444444
Q ss_pred HHHHHHHHhhhHHH-hccccchhHHHHHHHHhHHHH
Q 000199 1477 VVLKAKLAEQHAQV-ISSEGYIDEQKMLQNQCNELR 1511 (1872)
Q Consensus 1477 ~vlk~kl~e~~~~i-~~~~~~~~el~~l~~~~~el~ 1511 (1872)
--|+..|++-+-.+ .+|..-..++..++.+|-.|-
T Consensus 327 ~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 327 EDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 44444444332222 223444455666666665543
No 42
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.59 E-value=4.8 Score=53.50 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHH
Q 000199 1341 QYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAI 1406 (1872)
Q Consensus 1341 QYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasi 1406 (1872)
-+...+++++.++.--++++.++.......++.+..+ .......++...+.++.+.++..-
T Consensus 583 ~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL-----ELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666555555556666666666666666666 333344455555555555444443
No 43
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.53 E-value=4.5 Score=52.36 Aligned_cols=367 Identities=18% Similarity=0.241 Sum_probs=210.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhh
Q 000199 1034 EFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLL 1113 (1872)
Q Consensus 1034 E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~ 1113 (1872)
+++.+..++..|+.++- +.+.+-+..-..++.=+.+|+-+..+|.+-|..+..-.++++..+.-++-+|..+-..|.
T Consensus 318 ~lq~~~k~~~qlt~eKe---~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ele 394 (786)
T PF05483_consen 318 DLQQATKTLIQLTEEKE---AQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELE 394 (786)
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Confidence 55555667778888774 445666778888899999999999999999999999999988888888888887766664
Q ss_pred hhhHh--hHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH
Q 000199 1114 DFDQQ--KSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLN 1190 (1872)
Q Consensus 1114 sfd~e--nqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln 1190 (1872)
.---. +.++ ++-+...+.+... ++-+..+++--.++|.+.=+.+...+-..++..-|++..|+
T Consensus 395 Emtk~k~~ke~eleeL~~~L~e~qk--------------ll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~ 460 (786)
T PF05483_consen 395 EMTKQKNNKEVELEELKKILAEKQK--------------LLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLT 460 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 32211 1111 3333444443332 11222333333333333333333344445556666666666
Q ss_pred HHHHhhhhhhhhhhHHHHHHH--------------HHhhhHHHHHHHHhHhHHHh--------------hhhhccccchH
Q 000199 1191 EKQQQLIDFDQQNSEMIQKIA--------------ELTSENQALMVSLQEYAEES--------------SRLASEGNTSK 1242 (1872)
Q Consensus 1191 ~~~~~e~e~~~enSeL~~~~~--------------~L~~en~a~mv~L~d~kee~--------------aq~a~e~~~Lk 1242 (1872)
.-...+-.|...+.+|-+-++ .|.-+|..+--+..+-+-+. -...-.+..|.
T Consensus 461 ~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Le 540 (786)
T PF05483_consen 461 TIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLE 540 (786)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555544333 23333333332222222000 01112233333
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhh--hhhhcc--cccchHHHHHHHHHhhhHhhhhhhhhhccccchhh
Q 000199 1243 ETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKH--CQLLDL--DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQ 1318 (1872)
Q Consensus 1243 ~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~--~qL~~~--d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls 1318 (1872)
..=.-++++|. ++|+++..+..+++.+|+.-+ .+...| -.....+..|.+.|+-|..... -++-.|..|+
T Consensus 541 e~~~~Lrnele---s~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvE---nk~K~ieeLq 614 (786)
T PF05483_consen 541 ETNTQLRNELE---SVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVE---NKNKNIEELQ 614 (786)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Confidence 33333444443 667777777777777776521 111111 1122234455555555544221 2344455566
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHH-
Q 000199 1319 SELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDT- 1397 (1872)
Q Consensus 1319 ~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~e- 1397 (1872)
-+=+-|+...-|++-++ .+|+++|..|..-+...+++.+|+..+++- .++.-..+|+.+..+...+-..-.+
T Consensus 615 qeNk~LKKk~~aE~kq~----~~~eikVn~L~~E~e~~kk~~eE~~~~~~k---eie~K~~~e~~L~~EveK~k~~a~EA 687 (786)
T PF05483_consen 615 QENKALKKKITAESKQS----NVYEIKVNKLQEELENLKKKHEEETDKYQK---EIESKSISEEELLGEVEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 66667777777777666 479999999999999999999999988864 5556777777777666655433222
Q ss_pred ------HHHHHHHHHHHhHHhhh----hhhhhh----hhhhhhhhhh
Q 000199 1398 ------LRSELDSAIAENRVLFH----ENNSLI----AQSEEYKSRA 1430 (1872)
Q Consensus 1398 ------LesELeasiaekR~L~n----and~~~----AElEE~Kqr~ 1430 (1872)
-+.-=|--|||-=+||. .||.|. |||..+|.+-
T Consensus 688 vK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE 734 (786)
T PF05483_consen 688 VKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKE 734 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222445555555553 466665 4444666543
No 44
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.37 E-value=6.6 Score=52.60 Aligned_cols=197 Identities=20% Similarity=0.190 Sum_probs=106.8
Q ss_pred hhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhh
Q 000199 961 KQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQ 1040 (1872)
Q Consensus 961 kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~ 1040 (1872)
-+.++++..--.-++.-++--++-.+.-..+-|..-.-=-.+.=-+|+|+|--+.+|++.|-+++-+=
T Consensus 129 ~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK------------ 196 (1195)
T KOG4643|consen 129 DLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEK------------ 196 (1195)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 33444554422334444555666667767776666555555666789999999999999998887532
Q ss_pred hHHHHHHHHHHHHHHhhcchhHHHHHHHHHH---hHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhH
Q 000199 1041 TISELTEENRALMVALQDKSEESVKLALEVD---SFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQ 1117 (1872)
Q Consensus 1041 ~~~el~~En~al~~slqdk~ees~~~~~El~---slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~ 1117 (1872)
.+-++.+-.-|+|+.-+-.++-.|+. +.+.+|+.--+|+-+.+.=.+--..+-..-+-.++-.+..+.++..
T Consensus 197 -----~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelke 271 (1195)
T KOG4643|consen 197 -----FENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKE 271 (1195)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHh
Confidence 24445555556666666666665554 4466777777777665543322111111112222334445555555
Q ss_pred hhHHHHHHHHhhhHhhhhhHHhhhhhhHHH--HHHHHHHHhHhhhhhhhhhhhhccccchHHHHhh
Q 000199 1118 QKSELIQKTAVLTKENQDLMVSLQNKSEEA--AKLAVELDSVRNSLQSVHDELHGERSLSDELKSR 1181 (1872)
Q Consensus 1118 enqeLl~~~~~dlEea~sl~~~Lls~sEe~--~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk 1181 (1872)
.|++| +++..-+--+|..++... +.+-++.++|...+..+.-+..-.++..++||--
T Consensus 272 dN~vL-------leekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 272 DNRVL-------LEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred hhHHH-------HHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555 333333223333333222 3344556666666655555555555444444433
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.35 E-value=1.7 Score=53.74 Aligned_cols=230 Identities=14% Similarity=0.189 Sum_probs=122.6
Q ss_pred hhhhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcC
Q 000199 299 NRLRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCH 378 (1872)
Q Consensus 299 n~~R~~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~ 378 (1872)
..+++....++..+..|+.++..++.+.+....-+..++++... .-+++-.++..+..++..++.++++++.--.-+
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~---~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999888887777777767666542 234555555555555555555555554333211
Q ss_pred CCCChHHHhhhhccCCCChhhhhhhhhhhhhhhhccccccccccccCCccccccCCccccccc-cCCCcccccccCC-CC
Q 000199 379 PFTSWEAVKQGTEITMSTPNLVTCDRSKVNEIGEISLNKYEQYLSGTGLETELYQPDLDMLHC-VGIPALASHEHSS-VN 456 (1872)
Q Consensus 379 ~~a~~eelkqel~~~~s~~eli~~El~~~~e~ke~~l~~~~~~~~~s~sd~d~~q~dL~~L~~-l~~~~lvske~~~-a~ 456 (1872)
+ .++...+..+.++......-+ .+....+.++.+++. ...|.-- ....+ ..
T Consensus 247 --------~----~~i~~~~~~L~~l~~~~~~~~--------------~~l~~~~~~~~~~~~~~~Cp~C~-~~~~~~~~ 299 (562)
T PHA02562 247 --------V----MDIEDPSAALNKLNTAAAKIK--------------SKIEQFQKVIKMYEKGGVCPTCT-QQISEGPD 299 (562)
T ss_pred --------h----cccccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCCCCCC-CcCCCcHH
Confidence 1 111111111111110000000 000001111111100 0011110 11111 23
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHH
Q 000199 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMR 536 (1872)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Le 536 (1872)
....+.+.|-+|..+++.+.....+++..+++ |..+..++...+ ..+...+...+++...+..+++.|++|+
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~----~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELK----NKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666665553 344444433321 2455566777778888899999999997
Q ss_pred HH---HHHHHHHHhhhHhHHHhhhHHHHHhhhh
Q 000199 537 LD---VDEQVLRFSEERRDLESLNKELERRAVS 566 (1872)
Q Consensus 537 ee---l~~Q~~rF~eDl~a~~~~kvEqEqRAI~ 566 (1872)
.. ++....+..++++.+...+.+.++..-.
T Consensus 372 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 372 AEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 4466777778888887777777665543
No 46
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=9.1 Score=52.12 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=46.9
Q ss_pred chhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhh
Q 000199 1356 TDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLF 1413 (1872)
Q Consensus 1356 Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~ 1413 (1872)
|+-..+.+...++++.+..+.+....-.+-++-..|...|.+|+..|+...++--.+.
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~ 833 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLA 833 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHH
Confidence 4447788889999999999999888888888888899999999888888777744443
No 47
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.15 E-value=8.1 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=12.2
Q ss_pred HHHHHHhhhhHHhhhhhhhhhHHH
Q 000199 1021 LAQEILALQVVTEEFDRSKQTISE 1044 (1872)
Q Consensus 1021 l~~~i~~l~~v~~E~~~tK~~~~e 1044 (1872)
+..+|.++..-..++...+..+..
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444444
No 48
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.93 E-value=1.8 Score=56.38 Aligned_cols=158 Identities=32% Similarity=0.367 Sum_probs=111.7
Q ss_pred HHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhh--------------hhhhhhhhhhhhHHhhhh
Q 000199 1371 ETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNS--------------LIAQSEEYKSRAETMADN 1436 (1872)
Q Consensus 1371 edeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~--------------~~AElEE~Kqr~E~~l~~ 1436 (1872)
++.|.-+...|+.|+.+..+|.+-|--++.++..+.+|+--|...+.. |+.|+.|+|.|-.-.+++
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566666677777777777777766666666666665555444433 355666999998888898
Q ss_pred hhhhh-------------hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHH
Q 000199 1437 YGEHK-------------SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKML 1503 (1872)
Q Consensus 1437 ~~Eek-------------~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l 1503 (1872)
|+|=- .+-.||++-||+=+..++|+|+-|..--+|+.-.-.|....|+|.- .=|..=
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEAL----------esl~~E 168 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEAL----------ESLKSE 168 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 88621 2456899999999999999999999999999877777777777761 112233
Q ss_pred HHHhHHHHHHHHHHHhhhhh---hcchhhhhHHhhhhhh
Q 000199 1504 QNQCNELRRKLSEQILKTEE---FRNLSIHLKELKDKAD 1539 (1872)
Q Consensus 1504 ~~~~~el~qklseqilktee---fknlsihlkelkdkae 1539 (1872)
++|-+.|.+-|+. -+..+. |.||.|+|+-++...+
T Consensus 169 Reqk~~LrkEL~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (717)
T PF09730_consen 169 REQKNALRKELDQ-HLNIESISYLSNLAISLDGLKFSED 206 (717)
T ss_pred HHHHHHHHHHHHH-hcCccccccccchhhcccccccccc
Confidence 4566666666653 344455 6889999999977665
No 49
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.86 E-value=8.2 Score=49.09 Aligned_cols=193 Identities=16% Similarity=0.256 Sum_probs=93.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhh----hhHHHHHhHhhhhhh----
Q 000199 1035 FDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR----DDLKSAVSDITSQLS---- 1106 (1872)
Q Consensus 1035 ~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~----edl~~~vsdLaSEL~---- 1106 (1872)
++.+...+......=+.+...+++=.+.-.+...+++.||.-++.+...+.+-+-.- +.++..++.+-.+.+
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~ 186 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVE 186 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444445555445555666778888888888888777766443 333333333333322
Q ss_pred --------hhhhhhhhhhHhhHHH---HHHHHhhhHhhhh-hHHhhhhhhHHHHHHH-----HHHHhHhhhhhhhhhhhh
Q 000199 1107 --------AKHSQLLDFDQQKSEL---IQKTAVLTKENQD-LMVSLQNKSEEAAKLA-----VELDSVRNSLQSVHDELH 1169 (1872)
Q Consensus 1107 --------eK~~sL~sfd~enqeL---l~~~~~dlEea~s-l~~~Lls~sEe~~k~a-----~t~~q~e~~lqeL~~eL~ 1169 (1872)
.-+..+.....+...| |..+=....+... +-.+|..++.-+++.. |+-..+..-|+.+..++.
T Consensus 187 l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~ 266 (569)
T PRK04778 187 LTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQID 266 (569)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 1122333333333333 4444333444433 3355555566555444 333334444444444444
Q ss_pred ccc------------cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHh
Q 000199 1170 GER------------SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEY 1227 (1872)
Q Consensus 1170 ~~~------------~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~ 1227 (1872)
... ...+.++....++-+.|..-...=-........+...+..+...|..+..++..-
T Consensus 267 ~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3334444444444444444444444444444555555555566666665555433
No 50
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.85 E-value=0.018 Score=73.47 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh
Q 000199 1238 GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA 1307 (1872)
Q Consensus 1238 ~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~ 1307 (1872)
+-.|.....-+..|+..+|..+.. |..|+.+....+..|..++.-..+|..++-++..|+.++..-
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n----~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQEN----VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777776654 667777777777777777888888888888888888877643
No 51
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.52 E-value=12 Score=48.59 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHH
Q 000199 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELT 1046 (1872)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~ 1046 (1872)
+-++.|+.+++.++.++.+-.+-.+.++..+.+--.+|..+|..++.+.. ..-+.....+.+..-|.|++--.
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e-------~~~D~~kLLe~lqsdk~t~SRAl 159 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE-------QQEDRQKLLEQLQSDKATASRAL 159 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcccchHHHHHH
Confidence 34567888888888888765555555555555555566666666655444 33444455555666677777777
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1047 EENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1047 ~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
.-|+.|=--|-.=-+.-++|..+--.|+..||+..--...+..-..+++.++..+--.+-.|..-++++..++.++
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7777654333333334555555555555554443333322222223455555555555555555555555555544
No 52
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=11 Score=48.03 Aligned_cols=134 Identities=20% Similarity=0.234 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH
Q 000199 910 RNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV 989 (1872)
Q Consensus 910 ~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ 989 (1872)
+++.+-=|.|.+||.+|..-|+-++.-.+.+.+++--.|+-|-. .+---.|...++.- += +. -+.-|+--
T Consensus 32 ~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q-~~s~hkk~~~~g~e--~E----es---LLqESaak 101 (772)
T KOG0999|consen 32 IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ-YRSQHKKVARDGEE--RE----ES---LLQESAAK 101 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccchh--hH----HH---HHHHHHHh
Confidence 34455556777777777777777777777776666666665531 11111111111110 00 00 11224445
Q ss_pred HHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhh--HHhhhhh--hhhhHHHHHHHHHHHH
Q 000199 990 EENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQV--VTEEFDR--SKQTISELTEENRALM 1053 (1872)
Q Consensus 990 ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~--v~~E~~~--tK~~~~el~~En~al~ 1053 (1872)
|+-|-++-.+|--.|.+++.+|-...++|+-|.++-.++-. .+.|.+| +|--+.++...-.+|+
T Consensus 102 E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888888776655532 2333433 3444445544444444
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.26 E-value=19 Score=49.41 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=76.5
Q ss_pred hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHh
Q 000199 954 DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTE 1033 (1872)
Q Consensus 954 d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~ 1033 (1872)
|++.-.+...-+++-+-.++..++....-+.+-++-.-+..-++.|+- -++|++-+.|++++..+..|...-.
T Consensus 526 ~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~-------~~iq~~~e~~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 526 DAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELS-------KQIQQELEENRDLEDKLSLLEESKS 598 (1317)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhh-------HHHHHHhhccccHHHHHHHHHHHHH
Confidence 334444555555666667777777766666666666666666666554 3556666699999999888876654
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHh
Q 000199 1034 EFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL 1090 (1872)
Q Consensus 1034 E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl 1090 (1872)
.|.++|+-+...+.--..--..+..++..+++.+.||...+.+....
T Consensus 599 ----------~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 599 ----------KLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 44555555555554444555566677777888887777666554433
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.99 E-value=14 Score=49.25 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred HHHhHhhhhhhhhhhhhccccchH-------HHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH---HhhhHHHHHH
Q 000199 1153 ELDSVRNSLQSVHDELHGERSLSD-------ELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE---LTSENQALMV 1222 (1872)
Q Consensus 1153 t~~q~e~~lqeL~~eL~~~~~~~e-------~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~---L~~en~a~mv 1222 (1872)
|...+|+-+.+|+.+|..+|-.+. +|-+--++++..+.+.--==.+.+++.-+|.-.+.. ++.-....++
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577778888888887773222 333334444444444333223333333333333333 2444444444
Q ss_pred HHhHhHHHhhhhhccccch-----HHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHH
Q 000199 1223 SLQEYAEESSRLASEGNTS-----KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV 1297 (1872)
Q Consensus 1223 ~L~d~kee~aq~a~e~~~L-----k~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qv 1297 (1872)
++-|+++- -++++| .+--.||..|+..+.-=-++|+--++.|+++..++--.- -..+.-|+-+|..|.
T Consensus 305 emad~ad~-----iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~--~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 305 EMADTADA-----IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG--QAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cccchHHHHHHHHHH
Confidence 44444311 011111 223456666666665555677777777777776661100 012334555665555
Q ss_pred hhhHhhhhhh
Q 000199 1298 LDLESEKSRA 1307 (1872)
Q Consensus 1298 sdLese~S~~ 1307 (1872)
.-|--.+-|.
T Consensus 378 ~rLKdalVrL 387 (1243)
T KOG0971|consen 378 ARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=16 Score=46.83 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhH-HHHhhh-chhhhhhh
Q 000199 1202 QNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNV-VTDLTS-QLNEKHCQ 1279 (1872)
Q Consensus 1202 enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~-V~~L~s-kLdEk~~q 1279 (1872)
++.+|-.-++.+..+-+.++-.+-+-+-+-.... .+++.-+-+.-++...+-.. +...+. .++..+..
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f----------~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~ 409 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWELKLEIEDFF----------KELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAA 409 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCc
Confidence 3344444444456666666665555443311122 22222233333333333333 333333 45555555
Q ss_pred hhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 000199 1280 LLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRL 1359 (1872)
Q Consensus 1280 L~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~ 1359 (1872)
-..+|.-..=-..|+..+.+.+-++.....+.. .|+.|++++..... .+.|- |+.=..--.+-
T Consensus 410 ~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~---tLq~~~~~~~~~i~--------E~~~~------l~~~~~el~~~ 472 (581)
T KOG0995|consen 410 TNGVDLKSYVKPLLKELLDEISEELHEAENELE---TLQEHFSNKASTIE--------EKIQI------LGEIELELKKA 472 (581)
T ss_pred cccccchhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------HHHHH------HHHHHHHHHHH
Confidence 555666666667888888888888887777776 78999998875432 22221 11111111233
Q ss_pred HHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhh----hhhhhhhhhhhhhhh
Q 000199 1360 LTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHE----NNSLIAQSEEYKSRA 1430 (1872)
Q Consensus 1360 ~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~na----nd~~~AElEE~Kqr~ 1430 (1872)
...+..+-..++.+.+.|.+ +.+.|.-.|+-+...+.-++.+--.++.+ ++.|.+..++++++.
T Consensus 473 ~~~~~~~k~e~eee~~k~~~-------E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki 540 (581)
T KOG0995|consen 473 ESKYELKKEEAEEEWKKCRK-------EIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKI 540 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777766643 44455556666666666666554444433 333444444444333
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=94.62 E-value=23 Score=47.03 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHH
Q 000199 968 LLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISEL 1045 (1872)
Q Consensus 968 l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el 1045 (1872)
-++.+..+++.+....+-..+.+..|.. +..+..++..+..+..++......+.....++...+..+..+
T Consensus 313 ~l~~l~~~l~~~e~~~~~~e~~~~~~~e--------~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 382 (895)
T PRK01156 313 ILSNIDAEINKYHAIIKKLSVLQKDYND--------YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEY 382 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555554443333333333322 233444444444444444444444444444444444444433
No 57
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.61 E-value=23 Score=46.92 Aligned_cols=238 Identities=19% Similarity=0.229 Sum_probs=142.8
Q ss_pred hhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhH
Q 000199 1316 SLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSL 1395 (1872)
Q Consensus 1316 ~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I 1395 (1872)
.|+..|+.|+.....---+..=.+.++++.++.|..||..+.+-..+=+.+.-+.+.+|..-. ..+ .+-..+|
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~----~~A---~E~q~~L 442 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALS----KLA---GESQGSL 442 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH----HHH---HhHHHHH
Confidence 667777777655444333555578899999999999999999866666666666666654321 111 1223455
Q ss_pred HHHHHHHHHHHHH----------------hHHhhhhhhhhhhhhhh----------------------------hhhhhH
Q 000199 1396 DTLRSELDSAIAE----------------NRVLFHENNSLIAQSEE----------------------------YKSRAE 1431 (1872)
Q Consensus 1396 ~eLesELeasiae----------------kR~L~nand~~~AElEE----------------------------~Kqr~E 1431 (1872)
+....||-++.-+ +|...+-|+.-+.=..+ .....+
T Consensus 443 nsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~ 522 (717)
T PF09730_consen 443 NSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRRESSSVEERGLSSPILTDRGASSREMITSESGESSP 522 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhccCCCcccccccCcccccccccccccccCCCCCCCC
Confidence 6666666555433 67666666653321100 000000
Q ss_pred Hh--------h----hhhhhhhhhhHHHHHHHHHhhhccHHHHhh-------------hhhhhhhHHHHHHHHHHHHHhh
Q 000199 1432 TM--------A----DNYGEHKSQLALEVERMKQLLVGSEEEIDD-------------LMMSREELEIKVVVLKAKLAEQ 1486 (1872)
Q Consensus 1432 ~~--------l----~~~~Eek~k~a~Eve~lK~LL~~~eeeid~-------------l~~~k~e~ei~~~vlk~kl~e~ 1486 (1872)
.. . .+-..--+-++.-.+|+|+|....+.-++- .-..++++-=-|+-||+-|.--
T Consensus 523 s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTK 602 (717)
T PF09730_consen 523 SPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTK 602 (717)
T ss_pred CCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHH
Confidence 00 0 000111134455567777777554433221 1233445445777888888888
Q ss_pred hHHHhcccc--------chhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhhhhcccCCCcchh
Q 000199 1487 HAQVISSEG--------YIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLHEKRESEGLPTGM 1558 (1872)
Q Consensus 1487 ~~~i~~~~~--------~~~el~~l~~~~~el~qklseqilkteefknlsihlkelkdkaeaec~~~~ek~e~eg~~~am 1558 (1872)
+-||.||-- .--=|.+||.+|- .|-++=+|-...|=.-||-||+-|--
T Consensus 603 REQIaTLRTVLKANKqTAEvALanLKsKYE------~EK~~v~etm~kLRnELK~LKEDAAT------------------ 658 (717)
T PF09730_consen 603 REQIATLRTVLKANKQTAEVALANLKSKYE------NEKAMVSETMMKLRNELKALKEDAAT------------------ 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 888888731 1223566666664 34556666666777788999887654
Q ss_pred hhhhHHHHHH--HHhHHHHHHhhhhhcc
Q 000199 1559 QESLRIAFIK--EQCETKVQELKHHLSI 1584 (1872)
Q Consensus 1559 qeslriafik--eq~etk~qelk~qlsi 1584 (1872)
.=|||--|-. ++|=|.|-|++.||.-
T Consensus 659 FsSlRamFa~RCdEYvtQldemqrqL~a 686 (717)
T PF09730_consen 659 FSSLRAMFAARCDEYVTQLDEMQRQLAA 686 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999986 7899999999988753
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.58 E-value=19 Score=45.96 Aligned_cols=344 Identities=18% Similarity=0.250 Sum_probs=180.5
Q ss_pred cchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhh----h---cccCCcccccccccccccccccCCHHH
Q 000199 828 NLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDML----S---SYGESFSELCLHNKSADQNLESKDLTS 900 (1872)
Q Consensus 828 ~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l----~---sy~~~~~~l~l~~~s~~~dl~~~d~~~ 900 (1872)
.+...|....+..+.|+.++++|-.....-..-+..|.++...+= + +|+..+..|. .
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le----------------~ 172 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELE----------------K 172 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHH----------------H
Confidence 445566777788888888888888888888888887777665432 2 5555444421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHH
Q 000199 901 VIMRLEVLQRNACQKIRQLMQEKKALIDEKDR--AEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEA 978 (1872)
Q Consensus 901 v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~--~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~ 978 (1872)
+|+.+... + ...+.|...-|- |+.-+. +-+.++..+-+.+..=+.|+..++..|-+
T Consensus 173 ---~l~~~e~~-f-------~~f~~l~~~Gd~~~A~e~l~-----------~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ 230 (569)
T PRK04778 173 ---QLENLEEE-F-------SQFVELTESGDYVEAREILD-----------QLEEELAALEQIMEEIPELLKELQTELPD 230 (569)
T ss_pred ---HHHHHHHH-H-------HHHHHHhcCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333221 1 122222222111 222222 22333344444444445566666655422
Q ss_pred Hhhhhcc--chHHHHhHhhhhhccccchhHHHHHHHH------------hhhccHHHHHHHHhhhhHHhhhhhhhhhHHH
Q 000199 979 VADKLKV--SSEVEENNAQRHTDLFSDLDYLEVELQQ------------LSSKNRDLAQEILALQVVTEEFDRSKQTISE 1044 (1872)
Q Consensus 979 ~~~k~k~--~se~ee~y~~~~~~l~s~l~~~e~elq~------------l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~e 1044 (1872)
=...++- --=.++.|.-.|.++-+.++.|..++.. ...+|..+...|-.|-.+.+ +-..+-.+
T Consensus 231 ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~le---kE~~A~~~ 307 (569)
T PRK04778 231 QLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILE---REVKARKY 307 (569)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 2211111 1112445666666666666666666555 55677777777666655433 33333344
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhH----------hhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhh
Q 000199 1045 LTEENRALMVALQDKSEESVKLALEVDSFKQSFQ----------SLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLD 1114 (1872)
Q Consensus 1045 l~~En~al~~slqdk~ees~~~~~El~slK~s~q----------SLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~s 1114 (1872)
.......+...+.--.+..-.+..|++.|+.++. .+..++.............+.......+.....+..
T Consensus 308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee 387 (569)
T PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE 387 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555556666666666777777888888888844 444444444444444444444433333333333333
Q ss_pred hhHhhHHH----------HHHHHhhhHhhhhhHHhhhhhhHHHHHHH-------------HHHHhHhhhhhhhhhhhhcc
Q 000199 1115 FDQQKSEL----------IQKTAVLTKENQDLMVSLQNKSEEAAKLA-------------VELDSVRNSLQSVHDELHGE 1171 (1872)
Q Consensus 1115 fd~enqeL----------l~~~~~dlEea~sl~~~Lls~sEe~~k~a-------------~t~~q~e~~lqeL~~eL~~~ 1171 (1872)
+..+..++ +..+..+..++....-.+...-..+.+.. --.......++.|..+|..-
T Consensus 388 l~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g 467 (569)
T PRK04778 388 ILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEK 467 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33333333 22222222222222222111111111111 22224567777888888877
Q ss_pred ccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000199 1172 RSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE 1212 (1872)
Q Consensus 1172 ~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~ 1212 (1872)
.-..+.+.....++..-++....+..+......-+...+..
T Consensus 468 ~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 468 PINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788788888888888777777777766666655544
No 59
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.58 E-value=19 Score=45.98 Aligned_cols=336 Identities=18% Similarity=0.270 Sum_probs=163.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhh----hhHHHHHhHhhhhhhhhhhh
Q 000199 1036 DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR----DDLKSAVSDITSQLSAKHSQ 1111 (1872)
Q Consensus 1036 ~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~----edl~~~vsdLaSEL~eK~~s 1111 (1872)
+.+...+..+...=+++...|.+=-+.-.+.-.++..||.-|+.++..+.+-+..- +.++..++.+-...+.-..-
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444445566678888888888888887776544 44444444443333321111
Q ss_pred ------------hhhhhHhhHHH---HHHHHhhhHh-hhhhHHhhhhhhHHHHHHH------------HHHHhHhhhhhh
Q 000199 1112 ------------LLDFDQQKSEL---IQKTAVLTKE-NQDLMVSLQNKSEEAAKLA------------VELDSVRNSLQS 1163 (1872)
Q Consensus 1112 ------------L~sfd~enqeL---l~~~~~dlEe-a~sl~~~Lls~sEe~~k~a------------~t~~q~e~~lqe 1163 (1872)
+.....+...| |..+-..... ...+-..|.-++.-+.+.. -+...+++.+.+
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~ 263 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEE 263 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Confidence 11111111111 2222222222 1222223333333333222 333344444444
Q ss_pred hhhhhhccc-----cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccc
Q 000199 1164 VHDELHGER-----SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEG 1238 (1872)
Q Consensus 1164 L~~eL~~~~-----~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~ 1238 (1872)
....|..+. ...+.++.....+-..|..=...=-........+...+..+...|..++.++.
T Consensus 264 ~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~------------- 330 (560)
T PF06160_consen 264 ALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE------------- 330 (560)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 444443332 33333333333333344333333333344444445555555555555555553
Q ss_pred cchHHHHHHHHHHHhhhhhhhH---hhhhHHHHhhhchhhhhhhhhc-----------ccccchHHHHHHHHHhhhHhhh
Q 000199 1239 NTSKETLQSLRDELQSERSLRD---ELKNVVTDLTSQLNEKHCQLLD-----------LDQQKSELVQLKLLVLDLESEK 1304 (1872)
Q Consensus 1239 ~~Lk~~L~Sl~eEl~~erslre---eLE~~V~~L~skLdEk~~qL~~-----------~d~~~~EL~~Lk~qvsdLese~ 1304 (1872)
+++.+-.=-++|+..-+.+.+ .++..+.++...+++.+...+. ++.-..+...+...+..|...-
T Consensus 331 -~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 331 -RVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred -HHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444432 2333333333333333332211 1222233344555555555554
Q ss_pred hhhhhhccccchhhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHh
Q 000199 1305 SRASEESSSVTSLQSELSEMHELLLA-------VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSC 1377 (1872)
Q Consensus 1305 S~~~~ktsef~~Ls~hLsElke~l~A-------~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~ 1377 (1872)
.+.+.+-. .++..|++++-.+.. ++..-.|.... ..++.|..+|.-..=..+.+...+..|.+.+++.
T Consensus 410 ~~Ar~~l~---~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~--~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L 484 (560)
T PF06160_consen 410 KEAREKLQ---KLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVS--DEIEELSDELNQVPINMDEVNKQLEEAEDDVETL 484 (560)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 44444433 677778888877766 55555555443 7889999999988888999999999888888753
Q ss_pred hhhhhHHHHHhHHH
Q 000199 1378 LAREAQCNEENARL 1391 (1872)
Q Consensus 1378 lksEa~~~keNaeL 1391 (1872)
..+|.-+=.++.|
T Consensus 485 -~~~t~~li~~A~L 497 (560)
T PF06160_consen 485 -EEKTEELIDNATL 497 (560)
T ss_pred -HHHHHHHHHHHHH
Confidence 3444444444444
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.54 E-value=26 Score=47.43 Aligned_cols=207 Identities=19% Similarity=0.182 Sum_probs=118.3
Q ss_pred hHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHh--hh
Q 000199 1156 SVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEES--SR 1233 (1872)
Q Consensus 1156 q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~--aq 1233 (1872)
-|++-+..|+.+.- +|+ .+|.+-.--..++-++-++.-+-|.- |..++.-+-.+|+-++-++ +-
T Consensus 233 ~yrdeldalre~ae--r~d-----~~ykerlmDs~fykdRveelkedN~v-------LleekeMLeeQLq~lrarse~~t 298 (1195)
T KOG4643|consen 233 RYRDELDALREQAE--RPD-----TTYKERLMDSDFYKDRVEELKEDNRV-------LLEEKEMLEEQLQKLRARSEGAT 298 (1195)
T ss_pred hhhhHHHHHHHhhh--cCC-----CccchhhhhhHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHhccccCC
Confidence 35555555554432 222 33333333333444444444444433 3444445556677776444 77
Q ss_pred hhccccchHHHHHHHHHHHhhhhhhhHhhhh---HHHHhhhchhhhhhhhhcc-cccchHHHHHHHHHhhhHh--hhhh-
Q 000199 1234 LASEGNTSKETLQSLRDELQSERSLRDELKN---VVTDLTSQLNEKHCQLLDL-DQQKSELVQLKLLVLDLES--EKSR- 1306 (1872)
Q Consensus 1234 ~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~---~V~~L~skLdEk~~qL~~~-d~~~~EL~~Lk~qvsdLes--e~S~- 1306 (1872)
+-+++++|++.|.-+..|.+..|.=-++|-. |..+-+.+|+--...+-.| .....|=.-+...+.+||+ .+--
T Consensus 299 leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkll 378 (1195)
T KOG4643|consen 299 LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLL 378 (1195)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHH
Confidence 7889999999999999999999988777754 4444555666655555444 3334455567777888887 1110
Q ss_pred h----------hhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhH
Q 000199 1307 A----------SEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNS 1376 (1872)
Q Consensus 1307 ~----------~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~ 1376 (1872)
. .+.+++|..+=+.-.+|+. +-=++----++.+..++.+.+|+--+....-.++..+-.+.+++.+
T Consensus 379 LEnrrlt~tleelqsss~Ee~~SK~lelek----e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 379 LENRRLTGTLEELQSSSYEELISKHLELEK----EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHhHHHHHHHHHHhhhhHHHHHHHHHHHHH----HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2455555555444444432 1223344457889999999999887766555555444444444444
Q ss_pred hhhh
Q 000199 1377 CLAR 1380 (1872)
Q Consensus 1377 ~lks 1380 (1872)
+-.+
T Consensus 455 ~~~s 458 (1195)
T KOG4643|consen 455 VTRS 458 (1195)
T ss_pred HHHh
Confidence 4333
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.32 E-value=26 Score=46.45 Aligned_cols=214 Identities=19% Similarity=0.193 Sum_probs=115.5
Q ss_pred hhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccc
Q 000199 1234 LASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSS 1313 (1872)
Q Consensus 1234 ~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktse 1313 (1872)
+-+++-+-..+..-+.++|++++-++.......+.-+-=|. -|...|+-+..|+-.++-++.+|.+.
T Consensus 282 L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh-------------~enmkltrqkadirc~LlEarrk~eg 348 (1265)
T KOG0976|consen 282 LGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH-------------LENMKLTRQKADIRCALLEARRKAEG 348 (1265)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444555666666666666544443332222111 13466788899999999999999998
Q ss_pred cchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHH
Q 000199 1314 VTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLT 1393 (1872)
Q Consensus 1314 f~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~ 1393 (1872)
|......|-.=++-|++ |||-|- +++.-+..-...+.+++-+.+.-+|++.++..+=.+--+
T Consensus 349 fddk~~eLEKkrd~al~-dvr~i~----------e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~------- 410 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALM-DVRSIQ----------EKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK------- 410 (1265)
T ss_pred hhHHHHHHHHHHHHHHH-hHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-------
Confidence 88887777766665554 565443 333333333345667888888889998887654322211
Q ss_pred hHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhh-------hhhHHHHHHHHHhhhccHHHHhhhh
Q 000199 1394 SLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHK-------SQLALEVERMKQLLVGSEEEIDDLM 1466 (1872)
Q Consensus 1394 ~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek-------~k~a~Eve~lK~LL~~~eeeid~l~ 1466 (1872)
--...+.||+.+ .+.-|.|.+++----..+++.-.=|.-.+ .||-.=|.+++.|..+++-+
T Consensus 411 dhe~~kneL~~a-------~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~q----- 478 (1265)
T KOG0976|consen 411 DHEAAKNELQEA-------LEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQ----- 478 (1265)
T ss_pred hhHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhh-----
Confidence 112233333333 23334444444422222222222222111 34445556666666655533
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHhcc
Q 000199 1467 MSREELEIKVVVLKAKLAEQHAQVISS 1493 (1872)
Q Consensus 1467 ~~k~e~ei~~~vlk~kl~e~~~~i~~~ 1493 (1872)
--+|.-+-.||+-+..+.+.|--+
T Consensus 479 ---rKVeqe~emlKaen~rqakkiefm 502 (1265)
T KOG0976|consen 479 ---RKVEQEYEMLKAENERQAKKIEFM 502 (1265)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHH
Confidence 234444556677776665555444
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.28 E-value=5.9 Score=49.11 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHh---hhcccCCcccccccccc
Q 000199 812 KTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDM---LSSYGESFSELCLHNKS 888 (1872)
Q Consensus 812 ~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~---l~sy~~~~~~l~l~~~s 888 (1872)
..++..-+.+-.-+...++.++..+++++..++..+++....-..++.-...++.++..+ ...|. .-...|+|..+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~Cp~C~~~ 293 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE-KGGVCPTCTQQ 293 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCc
Confidence 334444444444555667888888888888888888887766666666666666655443 33453 34577888777
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000199 889 ADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKD 931 (1872)
Q Consensus 889 ~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d 931 (1872)
.... ++.++.|.. .+-.|-.+++.+....+
T Consensus 294 ~~~~------~~~~~~l~d-------~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 294 ISEG------PDRITKIKD-------KLKELQHSLEKLDTAID 323 (562)
T ss_pred CCCc------HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 6543 676667665 44445555555555444
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.59 E-value=49 Score=47.11 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=86.0
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 000199 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAAL---KRARLNYSIAVNQLQKDLELLSSQVLS 598 (1872)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeAL---RKtRwnnA~aaerLQeefk~LS~Qm~S 598 (1872)
.+.+..+..+++.+...++++.... ......-.+.+.+.-.+++.+ +..+-.+..+.+.+|.+...+...+..
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeL----eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~ 422 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVV----EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQA 422 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444333 333333333333333444443 333334455667777777777666643
Q ss_pred hhhhhHHHHHHHhhcCCCCCchhhhhhhhhccCCCcchhhhhhHhhhhhccccccccccccchHHhhhhhhHHHHHHHHH
Q 000199 599 MYQTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQHLGGDILIEDLKRSLYLQEGLYRK 678 (1872)
Q Consensus 599 ~fe~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~Kl~~~~n~~~~~k~q~l~~~i~~e~l~rs~~lqe~l~~~ 678 (1872)
.-.+++ +-..+.+ +.++|...-.. |..++.+...++...+ =.+.+++..+.--+.-|..
T Consensus 423 Le~~~~------~~~~~~~-------SdEeLe~~Len-F~aklee~e~qL~elE-------~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 423 LERAKQ------LCGLPDL-------TADNAEDWLEE-FQAKEQEATEELLSLE-------QKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHH------HhCCCCC-------CHHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333322 2222222 33334333333 4454444444443333 1223333222111111222
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000199 679 VEEEACELLSVNIYLDVFSKTLQKT--LLEASGEIRLMKERMDELSHQLELSTESNELL 735 (1872)
Q Consensus 679 ve~e~~em~~~ni~~~vfs~~l~et--~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l 735 (1872)
+-.+.-+ --.+--|++|-.+|+.. +---.+-..-|+.++.+|++.|+.-..+..+|
T Consensus 482 l~~~~Gk-v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~ 539 (1486)
T PRK04863 482 VRKIAGE-VSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLL 539 (1486)
T ss_pred HHHHcCC-cCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 23445678887777643 22224456678888888888776655554444
No 64
>PRK11637 AmiB activator; Provisional
Probab=93.56 E-value=6.1 Score=48.26 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHH
Q 000199 1385 NEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEV 1448 (1872)
Q Consensus 1385 ~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Ev 1448 (1872)
++.-......|...+.+++...++...+.......+++|+..+..-...+.....++....-++
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l 235 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444444444333333333333333333333
No 65
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.54 E-value=9.3 Score=43.40 Aligned_cols=97 Identities=24% Similarity=0.428 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1043 ~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
..|.+||..|-.++=--.+.+.+|+.|+.+|++.++|+.--++..+++-+.++. ++..+-++-.++..|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-----------Lk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-----------LKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 467788888888887788889999999999999999998777777766654443 233333334444444
Q ss_pred HHHHHhhhHhhhhhHHhhhhhhHHHHHH
Q 000199 1123 IQKTAVLTKENQDLMVSLQNKSEEAAKL 1150 (1872)
Q Consensus 1123 l~~~~~dlEea~sl~~~Lls~sEe~~k~ 1150 (1872)
+.+-.....+.++++...-.+-++--++
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5555555555555444444444433333
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=6 Score=52.02 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=64.4
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHH---hhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhh
Q 000199 1195 QLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEE---SSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTS 1271 (1872)
Q Consensus 1195 ~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee---~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~s 1271 (1872)
.+.+..-++.+|.+..--.+++|.-+.-.+..-+.+ .+++..++.+..+..-...+|+...++=-..+...-..|+.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~ 758 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTK 758 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555522 26677788888888888899999999988999999999999
Q ss_pred chhhhhhhhhcccc
Q 000199 1272 QLNEKHCQLLDLDQ 1285 (1872)
Q Consensus 1272 kLdEk~~qL~~~d~ 1285 (1872)
+|+++.+-+.+|..
T Consensus 759 ~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 759 ELNKKNADIESFKA 772 (970)
T ss_pred HHHhhhHHHHHHHH
Confidence 99999888877643
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.64 E-value=66 Score=45.94 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=103.7
Q ss_pred hhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 000199 1092 DDLKSAVSDITSQLSAKHSQLLDFDQQKSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG 1170 (1872)
Q Consensus 1092 edl~~~vsdLaSEL~eK~~sL~sfd~enqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~ 1170 (1872)
..++..+.++-.+++..+..+..|..+...+ ...-...-..|...+.+++.+-.+.+..|-...+++..+.+|.+.++.
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ 531 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555554 222235566778888899999999999998888889888888885554
Q ss_pred cc---cchHHHHh--------------hhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH-------------hhhHHHH
Q 000199 1171 ER---SLSDELKS--------------RAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL-------------TSENQAL 1220 (1872)
Q Consensus 1171 ~~---~~~e~LQs--------------k~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L-------------~~en~a~ 1220 (1872)
-. ..+..+.. ...+.+..+..+-..-.+..+..+++-.-++-| =-.+++.
T Consensus 532 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~a 611 (1486)
T PRK04863 532 QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDA 611 (1486)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHH
Confidence 33 33333322 222222222222222222333333333333322 0111222
Q ss_pred HHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHH
Q 000199 1221 MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLL 1296 (1872)
Q Consensus 1221 mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~q 1296 (1872)
...|.++.. ..-.+..++....+.+.+....++.-++.++.+...|..+...+ +..+++.-..|++.
T Consensus 612 l~~L~eq~g---~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l------~~~~~g~~~~l~~~ 678 (1486)
T PRK04863 612 LARLREQSG---EEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERL------SQPGGSEDPRLNAL 678 (1486)
T ss_pred HHHHHHhcc---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCCCccHHHHHH
Confidence 222433332 23344455555666666666666666677777777777666644 34444444555554
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.13 E-value=64 Score=42.61 Aligned_cols=272 Identities=21% Similarity=0.217 Sum_probs=177.1
Q ss_pred HHHHHhhhhccchH---HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHH
Q 000199 975 RFEAVADKLKVSSE---VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA 1051 (1872)
Q Consensus 975 ~~e~~~~k~k~~se---~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a 1051 (1872)
.++-|+++-+-|+- ++-+-.+.+.+|-+++++.|.+=.+-.+--- -...=+.|-.|||+++.-|.+|.. +
T Consensus 289 ~~eiiin~ng~SsT~e~ser~s~~v~~el~~~~~~~e~~es~Rs~s~~----n~~~~d~~q~eLdK~~~~i~~Ln~---~ 361 (961)
T KOG4673|consen 289 PYEIIINKNGRSSTDEISERISDFVSRELDSRLDTSELNESQRSSSAT----NVSDSDDVQLELDKTKKEIKMLNN---A 361 (961)
T ss_pred cceeecCCCCCccccccccccchHHHHHhccchhhHHhhhccCCCCCc----cccCchhHHHHHHHHHHHHHHHHH---H
Confidence 45666776544443 4556677888999999998876555433211 112223467788888888777743 2
Q ss_pred HHHHhhcchhHHHHHHHHHHh--HHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhh
Q 000199 1052 LMVALQDKSEESVKLALEVDS--FKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVL 1129 (1872)
Q Consensus 1052 l~~slqdk~ees~~~~~El~s--lK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~d 1129 (1872)
|-+- +.--++.|+.- |-+.|.-+.++-...+ .-.+.++.+ -.+|++-...|=+++...
T Consensus 362 leaR------eaqll~~e~~ka~lee~~~n~~~e~~~~k----~~~s~~ssl----------~~e~~QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 362 LEAR------EAQLLADEIAKAMLEEEQLNSVTEDLKRK----SNESEVSSL----------REEYHQRVATLEKKVQAL 421 (961)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhcccccch----------HHHHHHHHHHHHHHHHHH
Confidence 2110 00111111111 1111111111111111 111112222 235677777777777777
Q ss_pred hHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHH
Q 000199 1130 TKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQK 1209 (1872)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~ 1209 (1872)
+.+--.+--+..++++++.... .++-|.+-.....+++.--+.|.|+......++.-..+++.+-.-....+.-.
T Consensus 422 ~kERDalr~e~kslk~ela~~l-----~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~ 496 (961)
T KOG4673|consen 422 TKERDALRREQKSLKKELAAAL-----LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGEL 496 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 7776666666777777665331 23555566667778888889999999999999999999988877666677777
Q ss_pred HHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhh
Q 000199 1210 IAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHC 1278 (1872)
Q Consensus 1210 ~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~ 1278 (1872)
+-.|.++-.-+...|-++.+.-.+|.-.+.++-+-+.+..+..-+.|++-++|+.+.-.+..-+|+..-
T Consensus 497 i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 497 ITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777888888888888887777789999999999999999999999999999999988888777777643
No 69
>PRK11637 AmiB activator; Provisional
Probab=91.13 E-value=41 Score=41.38 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=6.9
Q ss_pred hhhHhhhhHHHHhhhchhh
Q 000199 1257 SLRDELKNVVTDLTSQLNE 1275 (1872)
Q Consensus 1257 slreeLE~~V~~L~skLdE 1275 (1872)
.++.+++.....|..+..+
T Consensus 198 ~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 198 TLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 70
>PF13514 AAA_27: AAA domain
Probab=91.04 E-value=80 Score=43.56 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=65.8
Q ss_pred hHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 841 ETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLM 920 (1872)
Q Consensus 841 ~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~ 920 (1872)
.....+.+.+..-...++.-+..+..++..++..++..+.+.|.. ..+..+-..|...+. ...++-.+.
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~----------~~~~~L~~~l~~a~~-~~~~~~~l~ 807 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE----------EALEALRARLEEARE-AQEERERLQ 807 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH----------HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333344444444455667777788888899998887766664441 234444445554443 356777778
Q ss_pred HHhHHHHHHHHHHhhhccccchhHHHHHHHHHh
Q 000199 921 QEKKALIDEKDRAEMSFSKSESDIVLVKQKFEH 953 (1872)
Q Consensus 921 ~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~ 953 (1872)
++.+.+..+.+.++..+...+.++..+-.....
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~ 840 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAELAELLEQAGV 840 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 888888888888887777777777666555543
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.43 E-value=94 Score=43.39 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHH----HHhhhHhhhhhhhhhccccchhh
Q 000199 1243 ETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKL----LVLDLESEKSRASEESSSVTSLQ 1318 (1872)
Q Consensus 1243 ~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~----qvsdLese~S~~~~ktsef~~Ls 1318 (1872)
+-.......+.++++.|+.++......+.++.=+++-+...-....+|.+.++ .+..|++.+-+-+.+.. .++
T Consensus 700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~---~~~ 776 (1317)
T KOG0612|consen 700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRL---SLQ 776 (1317)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh---hhH
Confidence 34666677788899999999998888888887777666544444444444433 34445554444443333 344
Q ss_pred HHHH
Q 000199 1319 SELS 1322 (1872)
Q Consensus 1319 ~hLs 1322 (1872)
..||
T Consensus 777 ~eLs 780 (1317)
T KOG0612|consen 777 RELK 780 (1317)
T ss_pred HHhh
Confidence 4444
No 72
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.42 E-value=22 Score=38.75 Aligned_cols=123 Identities=25% Similarity=0.258 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhHHHhhh----------hhhhhHHhHH
Q 000199 463 GKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML---GELQNLRNEHS----------SCLYTVSSAK 529 (1872)
Q Consensus 463 ~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~---~ElqnLr~EhS----------~~l~tIs~Le 529 (1872)
.|..+..+++...++++++|+-+++-|+.+-+.....++..-++.- .+++.|..+-+ .=|.+++.=+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666665555444333222111 11222222211 2234444455
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000199 530 AEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELL 592 (1872)
Q Consensus 530 aqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeefk~L 592 (1872)
..+..+=++++.++..++.......+.=.+-|+- -++..=...++++.||.+++-|
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-------k~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-------KVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 5555566666666666666555555444443333 4444455668899999998765
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.67 E-value=59 Score=43.86 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=90.3
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hH-HHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRH--ML-GELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q--~~-~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1872)
..+++++.+|.+-|+...+.+..++.+-+-.+--||.|++||.-.+.+ .+ ..+.|+...|++=+..+..+..|.-++
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 378899999999999999999999999999999999999985543321 11 336667777777777776666666665
Q ss_pred HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcC
Q 000199 536 RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAV-NQLQKDLELLSSQVLSMYQTNENLIKQAFVDS 614 (1872)
Q Consensus 536 eeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aa-erLQeefk~LS~Qm~S~fe~NEkl~~qA~~Ea 614 (1872)
-.++-.+. +....+..|+|+- ..-|+-.+-++.-++ -++|++++ ---+-+...+-+..+-.|+-.-
T Consensus 542 ~~~~~~~~-------~e~~~~~~e~e~s----i~ql~l~~~~~~ea~~tQ~~~~~~--~~il~~~~~~~~q~lq~al~~l 608 (980)
T KOG0980|consen 542 AAELVARE-------EEREALRLEAERS----INQLELDSSASTEAGITQLQDDLN--DPILDGSLASGIQALQNALYQL 608 (980)
T ss_pred HHHHHHHH-------HHHHHHHHHHHhh----HHHhhcccccchHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 55554444 1111233333332 222333332222222 24555554 1123334445566677777666
Q ss_pred CCCCchh
Q 000199 615 PQPTCQE 621 (1872)
Q Consensus 615 ~e~~~q~ 621 (1872)
..|....
T Consensus 609 d~P~~~~ 615 (980)
T KOG0980|consen 609 DSPLHWR 615 (980)
T ss_pred CCCcccC
Confidence 6665553
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.36 E-value=81 Score=41.92 Aligned_cols=202 Identities=27% Similarity=0.361 Sum_probs=131.6
Q ss_pred cccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHH
Q 000199 826 NGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRL 905 (1872)
Q Consensus 826 ~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~l 905 (1872)
.+.++-||..++.+-+.+..+++.|......=-+.+..|+.||. -
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~-----------------------------------e 499 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA-----------------------------------E 499 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------H
Confidence 35678888888888888888887777766655556666666632 2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhcc
Q 000199 906 EVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKV 985 (1872)
Q Consensus 906 e~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~ 985 (1872)
|.=++.+|++ ||.+|+++-..|-..+......|-+ .
T Consensus 500 E~~~R~~lEk--QL~eErk~r~~ee~~aar~~~~~~~-----------------------------------------~- 535 (697)
T PF09726_consen 500 ERRQRASLEK--QLQEERKARKEEEEKAARALAQAQA-----------------------------------------T- 535 (697)
T ss_pred HHHHHHHHHH--HHHHHHHHHhHHHHhhhhccccchh-----------------------------------------c-
Confidence 4446667776 5667777655544444333322200 1
Q ss_pred chHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000199 986 SSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVK 1065 (1872)
Q Consensus 986 ~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~ 1065 (1872)
..|.-|-+.++-.+|=+.+.+|..||+.-....+.+-.++-++.--. ++-..+.--
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~------------------------~e~~~~~e~ 591 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE------------------------KESEKDTEV 591 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhhhhhHHH
Confidence 11455556666667777778888888877777777776663322211 111122333
Q ss_pred HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhh
Q 000199 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLT 1130 (1872)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dl 1130 (1872)
|.+.|..+++-=++|-+-|-+|=.+-.||-+.+++---||...+.++..-|.|..+|..+++..+
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555567777788888888999999999999999999999999999999977766554
No 75
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.16 E-value=91 Score=41.36 Aligned_cols=279 Identities=20% Similarity=0.198 Sum_probs=141.0
Q ss_pred HHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHH
Q 000199 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEM 1324 (1872)
Q Consensus 1245 L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsEl 1324 (1872)
|+|=--+++.+++...+||-.+.+|+++|.--.-....++.-..=..+- +.+..+.+.++-.+...+.+.|--.-+...
T Consensus 287 Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~-~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~ 365 (716)
T KOG4593|consen 287 LQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLM-EKLVNEQSRNANLKNKNSTVTSPARGLERA 365 (716)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHH-HHHHHHHHHHhhhccccccccCcccchHHH
Confidence 6666667888888889999999999999988777666655322222333 333344455554566666443222111121
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHH
Q 000199 1325 HELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDS 1404 (1872)
Q Consensus 1325 ke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELea 1404 (1872)
- -+..++++=.-+.+-.++++-+|-.+|.-- ..++.-- +..++-....+...-+...-+..+|.-
T Consensus 366 ~-q~lke~~k~~~~ite~~tklk~l~etl~~~---~~~~~~~-----------~tq~~Dl~~~~~~~~~~~krl~~~l~~ 430 (716)
T KOG4593|consen 366 R-QLLKEELKQVAGITEEETKLKELHETLARR---LQKRALL-----------LTQERDLNRAILGSKDDEKRLAEELPQ 430 (716)
T ss_pred H-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHH-----------HHHHHHHHHHHhhccchHHHHHHHhHH
Confidence 1 122245555555566666666665554311 1111111 112222222223333333334444444
Q ss_pred HHHHhHHhhhhhhhhhhhhhhhhhhhHHhhh----hhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHH
Q 000199 1405 AIAENRVLFHENNSLIAQSEEYKSRAETMAD----NYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLK 1480 (1872)
Q Consensus 1405 siaekR~L~nand~~~AElEE~Kqr~E~~l~----~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk 1480 (1872)
+..+. ..++-+.-.+..++...+++.- .....+.....=.-.+|-|-..+.+.++.|.+.+.+.+...
T Consensus 431 ~tk~r----eqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~---- 502 (716)
T KOG4593|consen 431 VTKER----EQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLR---- 502 (716)
T ss_pred HHHHH----HHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 44331 2222233333333333333321 12222223333344567777777788888888887777542
Q ss_pred HHHHhhhHHHhccccchhHHHHHHHHh----HHHHHHHHHHHhhhhhhcchhhhh----------HHhhhhhhHHHHhhh
Q 000199 1481 AKLAEQHAQVISSEGYIDEQKMLQNQC----NELRRKLSEQILKTEEFRNLSIHL----------KELKDKADAECLKLH 1546 (1872)
Q Consensus 1481 ~kl~e~~~~i~~~~~~~~el~~l~~~~----~el~qklseqilkteefknlsihl----------kelkdkaeaec~~~~ 1546 (1872)
.|++ .|..|+..|...+ -.++.|+..+-.-.--||+|-+-. |.--..-.|||-..|
T Consensus 503 e~i~----------~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk 572 (716)
T KOG4593|consen 503 EKIE----------QYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLK 572 (716)
T ss_pred hHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2333344444444 566677777777666777764321 122234578888888
Q ss_pred h---hcccCCCcch
Q 000199 1547 E---KRESEGLPTG 1557 (1872)
Q Consensus 1547 e---k~e~eg~~~a 1557 (1872)
+ ..+.-+|+++
T Consensus 573 ~~l~~le~~~~~~~ 586 (716)
T KOG4593|consen 573 ERLTALEGDKMQFR 586 (716)
T ss_pred HHHHHHhccCCccc
Confidence 8 5555566554
No 76
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.88 E-value=65 Score=39.33 Aligned_cols=266 Identities=21% Similarity=0.254 Sum_probs=139.4
Q ss_pred hhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhc----------------------------chhHHHH
Q 000199 1014 LSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQD----------------------------KSEESVK 1065 (1872)
Q Consensus 1014 l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqd----------------------------k~ees~~ 1065 (1872)
|.||-++|-==-.+|+..-.|-|..|.-+..|.+..+++-....+ -.+.--+
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 455666655555567777777777777777777776665544332 2233344
Q ss_pred HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhH
Q 000199 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSE 1145 (1872)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sE 1145 (1872)
|..|+++|++-|..+++....+|.- .++.=+...+.. .-.|-.++..|+.++-...+....+..++.+.-.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~-------la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREK-------LARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHH-------HHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444432 222111111111 1122266666766665555666666777777777
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHh
Q 000199 1146 EAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQ 1225 (1872)
Q Consensus 1146 e~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~ 1225 (1872)
+......+++.|+..+.-|..||.-.-+-.+. +..||++++.+-.- |-.-+..++.+..-+...+.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~---rivDIDaLi~ENRy-----------L~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDEN---RIVDIDALIMENRY-----------LKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888877543322222 56677776643221 22222222333333333333
Q ss_pred HhH--------HHhh------hh-hccc---cchHHHHHHHHHHH--hhhhhhhHhhhhHHHHhhhchhhhhhhhhcccc
Q 000199 1226 EYA--------EESS------RL-ASEG---NTSKETLQSLRDEL--QSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQ 1285 (1872)
Q Consensus 1226 d~k--------ee~a------q~-a~e~---~~Lk~~L~Sl~eEl--~~erslreeLE~~V~~L~skLdEk~~qL~~~d~ 1285 (1872)
-|| ...- .. ...| .|.+++|.|-..+. -.=..+=-.|.+-++.|-.-+++|-.+|. +
T Consensus 221 KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~---H 297 (319)
T PF09789_consen 221 KYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQ---H 297 (319)
T ss_pred HHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHH---H
Confidence 333 0000 11 1122 23444443322221 00011123566667777777888876662 3
Q ss_pred cchHHHHHHHHHhhhHhhhh
Q 000199 1286 QKSELVQLKLLVLDLESEKS 1305 (1872)
Q Consensus 1286 ~~~EL~~Lk~qvsdLese~S 1305 (1872)
++.==-.|..+|.+||+++.
T Consensus 298 qr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 298 QRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34434567888999988763
No 77
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.68 E-value=92 Score=40.84 Aligned_cols=292 Identities=21% Similarity=0.233 Sum_probs=164.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhh
Q 000199 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1872)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk 1276 (1872)
+++...+.........|..++.+.-...-+.+.. .-.-+|-++..|++++.---...|....+-=.+|-+-
T Consensus 29 ~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k---------~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~ea 99 (629)
T KOG0963|consen 29 TEIAQRQDESEISRKRLAEETREFKKNTPEDKLK---------MVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEA 99 (629)
T ss_pred HHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 4555566666666666666666555554444422 2345788999999998766666666555555555443
Q ss_pred ----------hhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 000199 1277 ----------HCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWV 1346 (1872)
Q Consensus 1277 ----------~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkv 1346 (1872)
...+...+.-..|...|+..+-++.-+++...-+-..|.+|.-.|.++. +..-+||++--...=
T Consensus 100 PDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~------~~~~~~ie~~a~~~e 173 (629)
T KOG0963|consen 100 PDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLE------QLLEIFIENAANETE 173 (629)
T ss_pred CCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 2222333334567778888877777777755444444555554444444 445566663333222
Q ss_pred HHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhh-----------h
Q 000199 1347 EELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH-----------E 1415 (1872)
Q Consensus 1347 qEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~n-----------a 1415 (1872)
+.+.++ ..+-+..++|.. ....+.|..|..+|.+|.+.+.+.=.+.=.+.. .
T Consensus 174 ~~~~q~-------~~e~e~~L~~~~----------~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~ae 236 (629)
T KOG0963|consen 174 EKLEQE-------WAEREAGLKDEE----------QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAE 236 (629)
T ss_pred HHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Confidence 333322 223333344333 334466777777777776666554333222222 2
Q ss_pred hhhhhhhhhhhhhhhHHhhhhhhhhhhhh---------H--HHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 000199 1416 NNSLIAQSEEYKSRAETMADNYGEHKSQL---------A--LEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLA 1484 (1872)
Q Consensus 1416 nd~~~AElEE~Kqr~E~~l~~~~Eek~k~---------a--~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~ 1484 (1872)
+..++.+++.-++++.....+|..=+.++ + ++++++..+|+.-+.+|-.|...=.-++-- +-.-++
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e 313 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44566677766777666666554433333 3 788899999999888888877543333322 222334
Q ss_pred hhhHHHhccc----cchhHHHHHHHH------hHHHHHHHHHHHhhhhhhc
Q 000199 1485 EQHAQVISSE----GYIDEQKMLQNQ------CNELRRKLSEQILKTEEFR 1525 (1872)
Q Consensus 1485 e~~~~i~~~~----~~~~el~~l~~~------~~el~qklseqilkteefk 1525 (1872)
...+||.+++ .+..+|..|+++ |+++...|+ |||.=||-
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELs--iLk~ief~ 362 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELS--ILKAIEFG 362 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH--HHHHhhcC
Confidence 4556666663 345555555544 455666664 67766663
No 78
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.29 E-value=76 Score=42.16 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhh
Q 000199 968 LLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQV 1030 (1872)
Q Consensus 968 l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~ 1030 (1872)
...+|+.+++.+-.-+..+.-.|+-|.++=.-+.+.=-.+-.+|+++.-+|+.|-.+|-.|..
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888887777778888888888876667776667777888888888877776655543
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=88.18 E-value=1.3e+02 Score=41.97 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhh----hccHHHHHHHHhhhhHHhhhhhhhhhH
Q 000199 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLS----SKNRDLAQEILALQVVTEEFDRSKQTI 1042 (1872)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~----s~n~~l~~~i~~l~~v~~E~~~tK~~~ 1042 (1872)
+.||+|++++..++++-|-. +-.-.-+-+.|+|..||..|++|. ..|- -++.|..|+..+++|.| .|
T Consensus 1171 ~il~~L~~rt~rl~~~A~~l-----~~tGv~gay~s~f~~me~kl~~ir~il~~~sv-s~~~i~~l~~~~~~lr~---~l 1241 (1758)
T KOG0994|consen 1171 AILQELALRTHRLINRAKEL-----KQTGVLGAYASRFLDMEEKLEEIRAILSAPSV-SAEDIAQLASATESLRR---QL 1241 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hhccCchhhHhHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHH---HH
Confidence 45677777777777664421 111122356788899998888763 1221 12344444444444333 33
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHH
Q 000199 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVE 1087 (1872)
Q Consensus 1043 ~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~ae 1087 (1872)
..+++.--.+-+-|-|-.....--..+|+||...+..|..-.+.+
T Consensus 1242 ~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL 1286 (1758)
T KOG0994|consen 1242 QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKEL 1286 (1758)
T ss_pred HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 334433333333344433334444467777777777665544433
No 80
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.66 E-value=15 Score=43.79 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred hHhhhhhHHhhhhhhHHHHHHH------HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhh
Q 000199 1130 TKENQDLMVSLQNKSEEAAKLA------VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQN 1203 (1872)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~k~a------~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~en 1203 (1872)
-+.....-..+...+..++..| .-...+.+....|...+..+..+...|.+...-+...+......-.....+-
T Consensus 114 ~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 114 PDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666666666554 3333466666666666666666666666666656555555555444444444
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcc
Q 000199 1204 SEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL 1283 (1872)
Q Consensus 1204 SeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~ 1283 (1872)
+.|.+....+..-.+ ..|...+.+=+.+..++...+..|..++.++..+..--+++......+.+++.+.+..+...
T Consensus 194 ~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 194 ENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333322222 22222233334444445555555555555555555554555555555555555554444333
Q ss_pred -cccchHHHHHHHHHhhhHhh
Q 000199 1284 -DQQKSELVQLKLLVLDLESE 1303 (1872)
Q Consensus 1284 -d~~~~EL~~Lk~qvsdLese 1303 (1872)
+-...|+..||..+..|++.
T Consensus 271 r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 271 RGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 34677788888888777654
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.50 E-value=53 Score=37.69 Aligned_cols=225 Identities=17% Similarity=0.255 Sum_probs=108.5
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhh
Q 000199 1028 LQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSA 1107 (1872)
Q Consensus 1028 l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~e 1107 (1872)
+..+-.+++.+..-+..+ ...|.+....-...-.|+.+|..-++.+-+.+..--.-......++...-..+++
T Consensus 3 ~~~l~~eld~~~~~~~~~-------~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEA-------EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555544444443 4445556666677778888888888888877776655555566666666555555
Q ss_pred hhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhh
Q 000199 1108 KHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAID 1184 (1872)
Q Consensus 1108 K~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~D 1184 (1872)
-...+..+....... +..+-..+..+...+-+.-...++..+.. ..++.-|+..-.++...-.-...|......
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl---~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKL---KVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 555554444433333 44444455555555555555554443221 112222222222222222223333333333
Q ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhh----hhH
Q 000199 1185 ISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERS----LRD 1260 (1872)
Q Consensus 1185 ves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~ers----lre 1260 (1872)
+..-|...-+.+..+......+...+..|...-.+.-.-.. .++ --+..|...++.++++|...+. ++.
T Consensus 153 ~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae-~aE------~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 153 VGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE-FAE------RRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555554222111111110 001 1244556666666666665543 344
Q ss_pred hhhhHHHHh
Q 000199 1261 ELKNVVTDL 1269 (1872)
Q Consensus 1261 eLE~~V~~L 1269 (1872)
+|+.+..+|
T Consensus 226 eld~~l~el 234 (237)
T PF00261_consen 226 ELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 555554443
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.30 E-value=27 Score=41.74 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=92.2
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHhHHHhhhhhhhhHHhHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM-------LGELQNLRNEHSSCLYTVSSAKAE 531 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~-------~~ElqnLr~EhS~~l~tIs~Leaq 531 (1872)
..|.+.+..|..+.....+..+.+...+.++.-+|..|..++...+... ..++..++.+-...-..|...+..
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666777777777777654432211 145777777766666666665555
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000199 532 IEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQ 595 (1872)
Q Consensus 532 ve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeefk~LS~Q 595 (1872)
+.. ++.|.....+.+++++..+.+....--.|+.-+.+.|--...-+.+|+..|+.|-..
T Consensus 232 l~e----l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 232 LAE----LQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 544 445566677778888888888888877888888888877888899999999988643
No 83
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.08 E-value=34 Score=41.46 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred HHHhHHHhhHhhHHHHHHHHHhhhhHH
Q 000199 1069 EVDSFKQSFQSLHDELLVERSLRDDLK 1095 (1872)
Q Consensus 1069 El~slK~s~qSLhdEl~aersl~edl~ 1095 (1872)
=++.|++-+++|.+|+..+|.....|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367888888888888888887665554
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.98 E-value=1.1e+02 Score=39.84 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhHHhhhhhhhh-hhhhhhhhhhhhHHHHHHHHhhh
Q 000199 1590 EEMLWKLQDAIDEIENRKKSEA-AHLKKNEELGVKILELEAELQSL 1634 (1872)
Q Consensus 1590 Eeml~KLqdaide~e~rkKsea-~~lK~~eEL~~kilElEaelq~~ 1634 (1872)
...+-.+...++.+.++.++.+ ...++.+++...|.+++..+..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 372 GSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444577788888886555444 44567788888888877766544
No 85
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=86.89 E-value=1.2 Score=45.38 Aligned_cols=94 Identities=20% Similarity=0.385 Sum_probs=60.5
Q ss_pred ecccccc---cccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh-hc-CCCcc
Q 000199 24 ATHIQQT---GWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-GSSRS 98 (1872)
Q Consensus 24 AtqVp~~---gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-GSsks 98 (1872)
|..+|.. |-+..+|.++-...++...|| .|..| .+|+|.-+.........++.++...|.| .. +.++.
T Consensus 25 a~nL~~~~~~~~~d~yVk~~llp~~~~~~kT---kv~~~----~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~ 97 (124)
T cd08389 25 AQDIPTKDRGGASSWQVHLVLLPSKKQRAKT---KVQRG----PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKE 97 (124)
T ss_pred ecCCCchhcCCCCCcEEEEEEccCCcceeec---ccccC----CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccC
Confidence 4456644 455557665444444444443 35544 4999976665554444556666667776 22 34578
Q ss_pred cccceeecchhhcccccCCeeeeecCC
Q 000199 99 SILGEATINLADYADASKPSTVLLPLH 125 (1872)
Q Consensus 99 giLGEasinlAdY~~a~kp~~VSLPLk 125 (1872)
.+||++.|+|+++ ....+.+.-+||.
T Consensus 98 ~~lG~~~i~L~~l-~~~~~~~~w~~L~ 123 (124)
T cd08389 98 RLIGEKVVPLSQL-NLEGETTVWLTLE 123 (124)
T ss_pred ceEEEEEEecccc-CCCCCceEEEeCC
Confidence 8999999999999 4467788888875
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.83 E-value=44 Score=40.70 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------H----HHHHhHHHhhhh
Q 000199 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM--------------------L----GELQNLRNEHSS 520 (1872)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~--------------------~----~ElqnLr~EhS~ 520 (1872)
+.=|.+|||.|+.+||..-.-++||.+.|..|+........+- + .+...|..|-..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999999654433110 0 112224444444
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 000199 521 CLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQVLSMY 600 (1872)
Q Consensus 521 ~l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeefk~LS~Qm~S~f 600 (1872)
---.+.+++..++-|++.+..|-.++.+-- +.... .-|=..-..-|++++..+.|-..+-++.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~----------------~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIG----------------ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhcccc----------------ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666544443211 11100 2222223333555555555555555666
Q ss_pred hhhHHHHHHHhhcCCCCCchhhhhhhhhccCCCcchhhhhhHhhhhhccccccccccccchHHhhh-hhhHHHHHHHHHH
Q 000199 601 QTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQHLGGDILIEDLK-RSLYLQEGLYRKV 679 (1872)
Q Consensus 601 e~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~Kl~~~~n~~~~~k~q~l~~~i~~e~l~-rs~~lqe~l~~~v 679 (1872)
|+=|-++. -+ +.|.-|.+-|+.++.-+-...=.+-|.|+.|- -.-+|+|.|.+.-
T Consensus 154 DEkeEl~~-----------------------ER-D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 154 DEKEELVT-----------------------ER-DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHH-----------------------HH-HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 66554432 12 24888988888877544322212235566665 4447888887654
Q ss_pred HHHHHHHHhhhhhHHHhHH
Q 000199 680 EEEACELLSVNIYLDVFSK 698 (1872)
Q Consensus 680 e~e~~em~~~ni~~~vfs~ 698 (1872)
||=-.-..-.|=|...+..
T Consensus 210 eE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4433344445566665553
No 87
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.78 E-value=73 Score=36.62 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhh
Q 000199 1063 SVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDF 1115 (1872)
Q Consensus 1063 s~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sf 1115 (1872)
++-|.+=|++|.-+=+-|.+|+.......+-.+...+.|+-++-.++.++.+.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777677777777777777777777777777766666666554
No 88
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.58 E-value=1.6e+02 Score=40.33 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=58.7
Q ss_pred HHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhh-hHHHHHhhhhHHHHHHHHhhhhhHH---HHHHH
Q 000199 511 LQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESL-NKELERRAVSAEAALKRARLNYSIA---VNQLQ 586 (1872)
Q Consensus 511 lqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~-kvEqEqRAI~AEeALRKtRwnnA~a---aerLQ 586 (1872)
...|++|--+.--.|.+|+..+|.|..||+++ -.|-.+.-+- =+-.|+--++--+||-|-|==+|.. --+++
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeek----G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~ 402 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEK----GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQ 402 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44455555555566777888888888888887 2333222221 2345777788888888888666654 24677
Q ss_pred HHHHHHHHHHHhhhhhhHHH
Q 000199 587 KDLELLSSQVLSMYQTNENL 606 (1872)
Q Consensus 587 eefk~LS~Qm~S~fe~NEkl 606 (1872)
+|++++-.++.-.-..-|+|
T Consensus 403 kelE~k~sE~~eL~r~kE~L 422 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERL 422 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 77777766666555555554
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.52 E-value=69 Score=38.76 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH---------HHhhhccccchhHHHHHHHHHhhHHh-----hhh----hhhccHH
Q 000199 906 EVLQRNACQKIRQLMQEKKALIDEKD---------RAEMSFSKSESDIVLVKQKFEHDLRN-----MID----KQSVSNA 967 (1872)
Q Consensus 906 e~~q~~~c~kil~l~~ek~~l~~e~d---------~~~~~~~~aes~~~~~kqk~e~d~~~-----m~~----kl~~s~~ 967 (1872)
=++-+-+|.....-|.+-+.+..+-. ..+-|.++.+..-+.|...|..-=.. .-. .....+-
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klleg 144 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEG 144 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566799999998888777665443 34667777777777777666542110 000 0112344
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHH
Q 000199 968 LLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTE 1047 (1872)
Q Consensus 968 l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~ 1047 (1872)
|.+.|...++.|-.-..+-...++.-....+++....+.|..++.+|.. ++.+|-..+ ..|++++|..++++..
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~----~~~e~~~~d--~~eL~~lk~~l~~~~~ 218 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ----LEDELEDCD--PTELDRAKEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 4445555555555444444444455555555555555555555555432 233333333 3455555555555555
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHH
Q 000199 1048 ENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERS 1089 (1872)
Q Consensus 1048 En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aers 1089 (1872)
+....-..+.++.++-..+...|+..+...+-+..+......
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433333333333
No 90
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.49 E-value=30 Score=45.27 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhh
Q 000199 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLA 1379 (1872)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lk 1379 (1872)
..|.=+|+..+-+.+.+........-...+.++..++.+++..++..+.
T Consensus 174 N~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 174 DAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555666666666666666666666666554
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.17 E-value=1.4e+02 Score=39.14 Aligned_cols=196 Identities=17% Similarity=0.271 Sum_probs=110.4
Q ss_pred hhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhH
Q 000199 766 QNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKI 845 (1872)
Q Consensus 766 ~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~ 845 (1872)
.++++-..+.++...|.-|-++|.+.+..=..-.+-+.+|.+-.-+-..|.+.+..=.=-+-+.-..+.-++.|++..-.
T Consensus 229 ~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 229 YFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777888888888866655555556666666666666666665554433444455556666666666666
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000199 846 DFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKA 925 (1872)
Q Consensus 846 ~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~ 925 (1872)
|...+...++.|+..+.. | +||+ .| |-+...|+..
T Consensus 309 E~e~lq~~~d~Lk~~Ie~-Q------------~iS~--------------~d------------------ve~mn~Er~~ 343 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIEL-Q------------GISG--------------ED------------------VERMNLERNK 343 (581)
T ss_pred HHHHHHHHHHHHHHHHHh-c------------CCCH--------------HH------------------HHHHHHHHHH
Confidence 655555555555544321 1 4444 12 2334455666
Q ss_pred HHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHH-HHHHhhhhccchHHHHhHhhhhhccccch
Q 000199 926 LIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLR-FEAVADKLKVSSEVEENNAQRHTDLFSDL 1004 (1872)
Q Consensus 926 l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~-~e~~~~k~k~~se~ee~y~~~~~~l~s~l 1004 (1872)
|..+-+.+++-++.--.++-..+-+++.=+...-+++--=+.+.++|-+. .+.-++ .+-+|....+..++.=
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-------~~~~pe~~~~~~~d~k 416 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN-------LERNPERAATNGVDLK 416 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCcCCccCccccccch
Confidence 66666666665555555555556556666666666666666677777666 222222 3334445555555555
Q ss_pred hHHHHHHHH
Q 000199 1005 DYLEVELQQ 1013 (1872)
Q Consensus 1005 ~~~e~elq~ 1013 (1872)
++..+-|.+
T Consensus 417 ~~V~~~l~e 425 (581)
T KOG0995|consen 417 SYVKPLLKE 425 (581)
T ss_pred hHhHHHHHH
Confidence 555444433
No 92
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.91 E-value=1.1e+02 Score=39.12 Aligned_cols=158 Identities=19% Similarity=0.211 Sum_probs=79.7
Q ss_pred HhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhH---HhhhhhhhhhH----HHHHHHHHHHHHHhhcchhHH
Q 000199 991 ENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVV---TEEFDRSKQTI----SELTEENRALMVALQDKSEES 1063 (1872)
Q Consensus 991 e~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v---~~E~~~tK~~~----~el~~En~al~~slqdk~ees 1063 (1872)
.+|-.....|+-+.-.++++.+.|.....++-+-+..+... ..-++..|... ++|.+=++.....+|+|.-.-
T Consensus 176 ~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI 255 (511)
T PF09787_consen 176 GNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLI 255 (511)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34555566667777777777777776665444333322221 11222222111 122222222223334444221
Q ss_pred HH--------------HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhh
Q 000199 1064 VK--------------LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVL 1129 (1872)
Q Consensus 1064 ~~--------------~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~d 1129 (1872)
-. ..-|++.|+.-.+++++++...+.-.+++.....+...++.....++..+-.+.+....-....
T Consensus 256 ~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 256 ESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 11 1134666777777777777776666666677677777777766666655555555443333333
Q ss_pred hHhhhhhHHhhhhhhHHHH
Q 000199 1130 TKENQDLMVSLQNKSEEAA 1148 (1872)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~ 1148 (1872)
..+-....|++..+.++..
T Consensus 336 e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555444
No 93
>PRK09039 hypothetical protein; Validated
Probab=84.66 E-value=35 Score=41.40 Aligned_cols=124 Identities=20% Similarity=0.263 Sum_probs=81.2
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHhHHHhhh
Q 000199 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQR-----------------HMLGELQNLRNEHS 519 (1872)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~-----------------q~~~ElqnLr~EhS 519 (1872)
+...|+.+|.+|..-+...+.....|+..+.++...|+++...-+..+. +...++.+++.+++
T Consensus 54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777777766664221111 11145777778888
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHH-----HHHHHHH
Q 000199 520 SCLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAV-----NQLQKDL 589 (1872)
Q Consensus 520 ~~l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aa-----erLQeef 589 (1872)
..-..|.-|.+||+.|+ .|+....+.+++.+....++..+--. | +.|+++|.+. .++..+|
T Consensus 134 e~~~~V~~L~~qI~aLr----~Qla~le~~L~~ae~~~~~~~~~i~~----L-~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 134 RALAQVELLNQQIAALR----RQLAALEAALDASEKRDRESQAKIAD----L-GRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhHHHH
Confidence 88888999999998876 45777777777776666444443322 2 5677777766 5555555
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.17 E-value=1.4e+02 Score=39.22 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=85.3
Q ss_pred HhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh---------hhhhhhHHhhhhhh------
Q 000199 1374 LNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE---------EYKSRAETMADNYG------ 1438 (1872)
Q Consensus 1374 ln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE---------E~Kqr~E~~l~~~~------ 1438 (1872)
++..+..-.....+-.+....|-.++.+++.+..+-|..-..|..+.++++ .|=+|+--+.-+..
T Consensus 428 ~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI 507 (594)
T PF05667_consen 428 YRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEI 507 (594)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333334445556677888899999999999999999898888888888 23222222222211
Q ss_pred ----hhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHH
Q 000199 1439 ----EHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKL 1514 (1872)
Q Consensus 1439 ----Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qkl 1514 (1872)
.+-..+..|+-.+..-|.-.---+|+|++-. ||=|+. ...-|-=|+.|..-|+.|-+.
T Consensus 508 ~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrd-----------AKkDe~------~rkaYK~La~lh~~c~~Li~~- 569 (594)
T PF05667_consen 508 EKILSDTRELQKEINSLTGKLDRTFTVTDELIFRD-----------AKKDEA------ARKAYKLLASLHENCSQLIET- 569 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------hhcCHH------HHHHHHHHHHHHHHHHHHHHH-
Confidence 1223445555555555555555555555432 222332 445566677777777776443
Q ss_pred HHHHhhhhhhcchhhhhHHhhhhhhHH
Q 000199 1515 SEQILKTEEFRNLSIHLKELKDKADAE 1541 (1872)
Q Consensus 1515 seqilkteefknlsihlkelkdkaeae 1541 (1872)
.++=-.+..-+++|-++.+.|
T Consensus 570 ------v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 570 ------VEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred ------HHHhhHHHHHHHHHHHHHHHH
Confidence 344455666777777777764
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.06 E-value=1.8e+02 Score=39.56 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=45.6
Q ss_pred hhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHH
Q 000199 1425 EYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKML 1503 (1872)
Q Consensus 1425 E~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l 1503 (1872)
.++.+.+-.+..|.++=.-+...+..+-+=+.+++++.|+=.++|+=.++|. +-+.-.|.++.+--+|+-++
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~-------~nl~lki~s~kqeqee~~v~ 919 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKS-------ENLSLKIVSNKQEQEELLVL 919 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhc-------ccchhcccchhhhHHHHHHH
Confidence 4555556555666655445556666666667777899999999998877776 33444555554444444443
No 96
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=83.33 E-value=45 Score=36.45 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=67.5
Q ss_pred hhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHH
Q 000199 1004 LDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDE 1083 (1872)
Q Consensus 1004 l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdE 1083 (1872)
+=+++.+|+..-+++--|-+.|..|.+=-+-...-+..+.-=.+-.++.+..++. +...++.+++.|.+-|.++-.+
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~---el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEE---ELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888777665444444444433333334555555543 3344556666666666666666
Q ss_pred HHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1084 LLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1084 l~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
........+.++++|+.|-+-.+.....|+..-+++..+
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555555554444444443333
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.97 E-value=2.2e+02 Score=39.77 Aligned_cols=128 Identities=27% Similarity=0.333 Sum_probs=73.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHh
Q 000199 1182 AIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDE 1261 (1872)
Q Consensus 1182 ~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslree 1261 (1872)
...++.-+...+.+-.++...-++..+.+.++.++-.++-.++++-+..-.-...+++.+++-..-.+..+...+.-.+.
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555556665555555555555444333444455677777777888888888888888
Q ss_pred hhhHHHHhhhch-hhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcc
Q 000199 1262 LKNVVTDLTSQL-NEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESS 1312 (1872)
Q Consensus 1262 LE~~V~~L~skL-dEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~kts 1312 (1872)
++.+|.++..++ ++..-++ +.-.+++..|+.+|-.++.-.++...|-.
T Consensus 377 l~k~I~~~~~~~~~~~~~~~---~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSEL---EERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777 3332222 33345566677777776666554443333
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.70 E-value=1.8e+02 Score=38.52 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=66.1
Q ss_pred hHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHH
Q 000199 987 SEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKL 1066 (1872)
Q Consensus 987 se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~ 1066 (1872)
|++|..+...-..|-..++.|+.+++..+..|+.|-..+.....-..|+.+.-....+-..+...|+..+|.-...-++.
T Consensus 79 se~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA 158 (617)
T PF15070_consen 79 SEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA 158 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 44444333333335556778888888888888888776667777777777766666677677788888888777777777
Q ss_pred HHHHHhHHHhhHhhHH
Q 000199 1067 ALEVDSFKQSFQSLHD 1082 (1872)
Q Consensus 1067 ~~El~slK~s~qSLhd 1082 (1872)
++--..||+-|.-+++
T Consensus 159 lsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 159 LSQNRELKEQLAELQD 174 (617)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 7766777776665555
No 99
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.49 E-value=2.3e+02 Score=39.81 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=130.3
Q ss_pred ccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccch----HHHHhHhhhhhccc---cchhHHHH
Q 000199 937 FSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSS----EVEENNAQRHTDLF---SDLDYLEV 1009 (1872)
Q Consensus 937 ~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~s----e~ee~y~~~~~~l~---s~l~~~e~ 1009 (1872)
+.+-.|++..|+.|.++ |++++.--++|.+-+.+|-..++..-.-++... +.|++.+-..+.++ -+|+.|+.
T Consensus 1196 ~gay~s~f~~me~kl~~-ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~ 1274 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEE-IRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQR 1274 (1758)
T ss_pred chhhHhHHHHHHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHH
Confidence 34667899999999875 888888888998888887777777666655543 45677776666666 56777777
Q ss_pred HHHHhhhccHHHHHHHHhhhh--HHhhhhhhhhhH------HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHh--
Q 000199 1010 ELQQLSSKNRDLAQEILALQV--VTEEFDRSKQTI------SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQS-- 1079 (1872)
Q Consensus 1010 elq~l~s~n~~l~~~i~~l~~--v~~E~~~tK~~~------~el~~En~al~~slqdk~ees~~~~~El~slK~s~qS-- 1079 (1872)
+---|.---..|.+.+..|.. +.-=|+.|.... ++.+..--..++|.-|.+ +...=++.-|+-|..
T Consensus 1275 ~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s----R~e~l~~k~k~~f~~~~ 1350 (1758)
T KOG0994|consen 1275 EFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS----RVEELLVKQKGDFGGLA 1350 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh----HHHHHHHHhhhcccccc
Confidence 766655555555555444432 112233333222 222222222333333333 222223334444444
Q ss_pred ----hHHHHHHHHHhhhhHHHHHhHhhhhh------------------------------------------hhhhhhhh
Q 000199 1080 ----LHDELLVERSLRDDLKSAVSDITSQL------------------------------------------SAKHSQLL 1113 (1872)
Q Consensus 1080 ----LhdEl~aersl~edl~~~vsdLaSEL------------------------------------------~eK~~sL~ 1113 (1872)
+.+++.++.++.. ++.+.-++ .+....|.
T Consensus 1351 ~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1351 ENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLR 1425 (1758)
T ss_pred cccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHH
Confidence 3334444443332 11111110 02233444
Q ss_pred hhhHhhHHHHHHHH---hhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHHHhhhhhhHH
Q 000199 1114 DFDQQKSELIQKTA---VLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDELKSRAIDISS 1187 (1872)
Q Consensus 1114 sfd~enqeLl~~~~---~dlEea~sl~~~Lls~sEe~~k~a~t~~q-~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves 1187 (1872)
++-.|-.+++.+++ ...-+++..+..++-+....+..+-..+. +++.++++.+=|-.-..+-+.++-....|..
T Consensus 1426 ~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~ 1503 (1758)
T KOG0994|consen 1426 SKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLA 1503 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 44444445544443 22334455555555555555554444444 7778888887777777777777766655543
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.48 E-value=41 Score=41.68 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhh------
Q 000199 1341 QYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH------ 1414 (1872)
Q Consensus 1341 QYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~n------ 1414 (1872)
.++..+.+++.+|.-...-+..+..++-.+... .......+...+...+..+++++..+-+..+.+-.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~------~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~ 238 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPD------QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEE 238 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 345556666666666666666666555433111 12234455666777777777777666555443332
Q ss_pred ---------hhhhhhhhhhhhhhhhHHhhhhhhhh
Q 000199 1415 ---------ENNSLIAQSEEYKSRAETMADNYGEH 1440 (1872)
Q Consensus 1415 ---------and~~~AElEE~Kqr~E~~l~~~~Ee 1440 (1872)
.+..+..++-+-..+.......|.++
T Consensus 239 ~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~ 273 (498)
T TIGR03007 239 PVLLAGSSVANSELDGRIEALEKQLDALRLRYTDK 273 (498)
T ss_pred CCcCcccccCCCchHHHHHHHHHHHHHHHHHhccc
Confidence 13344555556666666666777766
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.41 E-value=17 Score=41.12 Aligned_cols=164 Identities=20% Similarity=0.298 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHH-------HHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhH---HhhHHhhhhccccc
Q 000199 709 GEIRLMKERMDELS-------HQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMA---LQNQLLESNLQDVT 778 (1872)
Q Consensus 709 ~~i~~mker~~~l~-------~ql~~s~~~~~~l~~~l~~a~d~~~~l~e~~~~~i~kc~d~a---~~nq~lea~lq~~~ 778 (1872)
..|+-||+.|.++. ..+.....-+..|+.-|..|.-++..|..--+.|.--.-.++ .+-..++..|.++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544 444444445667778888888888877766666553222221 12345688888888
Q ss_pred hhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHH
Q 000199 779 CENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQ 858 (1872)
Q Consensus 779 ~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq 858 (1872)
.|+..|.|++.. +..+...+..+|+.+.-| +-.|-++.+--|...+..+.+.++.--..|.+.-+..+==.
T Consensus 107 ~e~evL~qr~~k---le~ErdeL~~kf~~~i~e------vqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 107 WEHEVLEQRFEK---LEQERDELYRKFESAIQE------VQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 888888888765 445677777777776554 33455555556777888888888888888887655544334
Q ss_pred HHHHHHHHHHHHhhhcccCCccc
Q 000199 859 RTINNLQNKMHDMLSSYGESFSE 881 (1872)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~~ 881 (1872)
..+..+..++.++|.++|..|..
T Consensus 178 ~~~~~v~~~l~~~l~~KN~~I~~ 200 (201)
T PF13851_consen 178 AALSQVSKKLEDVLDSKNQTIKD 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777889999999999987765
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.81 E-value=27 Score=37.80 Aligned_cols=111 Identities=25% Similarity=0.271 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHH
Q 000199 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEM 1324 (1872)
Q Consensus 1245 L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsEl 1324 (1872)
....+.||.++..=...|+..|..+..+|.+....+..-+...+....|...+.-||.++- .....|++.
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele----------~ae~~L~e~ 99 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE----------EAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH----------HHHHHHHHH
Confidence 3334444444444334444444444444444444443333333344445555555554444 223344455
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhcc
Q 000199 1325 HELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVD 1369 (1872)
Q Consensus 1325 ke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qD 1369 (1872)
-+++.-+|++. .+||-+|+.|.++..-..+-.++|..||.+
T Consensus 100 ~ekl~e~d~~a----e~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 100 TEKLREADVKA----EHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555542 455555555555555555555555555543
No 103
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.76 E-value=2.1e+02 Score=38.22 Aligned_cols=524 Identities=21% Similarity=0.226 Sum_probs=243.4
Q ss_pred hccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccch
Q 000199 751 EYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLR 830 (1872)
Q Consensus 751 e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~ 830 (1872)
+--.-|.++|.-|++++-. ++-.|.+...++..-...+.--| +|++=+..+..+...|...- ..++
T Consensus 53 ~~s~n~~~~s~~~~~~~~l-------~~Lqns~kr~el~~~k~~~i~~r----~~~~~~dr~~~~~~~l~~~q---~a~~ 118 (716)
T KOG4593|consen 53 ERSENITSKSLLMQLEDEL-------MQLQNSHKRAELELTKAQSILAR----NYEAEVDRKHKLLTRLRQLQ---EALK 118 (716)
T ss_pred hhhccchhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3345688999888887643 34456665555544444444433 45565555555554443221 2333
Q ss_pred hhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHH---HHhhhcccCCcccccccccccccccccCCHHHHHHHHHH
Q 000199 831 RETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKM---HDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEV 907 (1872)
Q Consensus 831 ~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl---~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~ 907 (1872)
..=..+|+.++-.+......- .......+.+++++ ..+-.-||.+++. +..+--.+...-+++-+.++.+++
T Consensus 119 ~~e~~lq~q~e~~~n~~q~~~---~k~~el~~e~~~k~ae~~~lr~k~dss~s~--~q~e~~~~~~~~~~~~s~l~~~ek 193 (716)
T KOG4593|consen 119 GQEEKLQEQLERNRNQCQANL---KKELELLREKEDKLAELGTLRNKLDSSLSE--LQWEVMLQEMRAKRLHSELQNEEK 193 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554443322111 11122334444443 3455589999998 656666677777888888888776
Q ss_pred H---HHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhc
Q 000199 908 L---QRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLK 984 (1872)
Q Consensus 908 ~---q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k 984 (1872)
. |+.-|+.-.+.+.++.+--.++-.-..-..-.+.-+..- +.+..|+-++.-==--+.+|...+...+..++
T Consensus 194 e~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~-----~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~ 268 (716)
T KOG4593|consen 194 ELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLS-----EELEAINKNMKDQLQELEELERALSQLREELA 268 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566677777777776665554433332222222111110 11111111111000001222223333333332
Q ss_pred cchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHH------------
Q 000199 985 VSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL------------ 1052 (1872)
Q Consensus 985 ~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al------------ 1052 (1872)
-+.+-.+ -+..|-.|.-.|.+-...+...+.+...|..||-.+
T Consensus 269 ~~re~~~-------------------------tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~ 323 (716)
T KOG4593|consen 269 TLRENRE-------------------------TVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQ 323 (716)
T ss_pred HHHHhhh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 2222111 112233334444444444444444444444444333
Q ss_pred -HHHhhcchhHHHHHHHHHHhHHH------hhHhhHHHHHHHHHhh-hhHHHHHhHhh---hhhhhhhhhhhhhhHhhHH
Q 000199 1053 -MVALQDKSEESVKLALEVDSFKQ------SFQSLHDELLVERSLR-DDLKSAVSDIT---SQLSAKHSQLLDFDQQKSE 1121 (1872)
Q Consensus 1053 -~~slqdk~ees~~~~~El~slK~------s~qSLhdEl~aersl~-edl~~~vsdLa---SEL~eK~~sL~sfd~enqe 1121 (1872)
|.+++++.-.+-+++.|...-+. ++-|-.+-+...+++. +++.+ ++-+| +.+-+.|..| ..
T Consensus 324 ~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~-~~~ite~~tklk~l~etl-------~~ 395 (716)
T KOG4593|consen 324 EMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQ-VAGITEEETKLKELHETL-------AR 395 (716)
T ss_pred hhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHH-------HH
Confidence 34888888888888887654332 2333333222222222 33322 33333 3333333333 33
Q ss_pred HHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHH----HHhhhhhhHHHHHHHHHhhh
Q 000199 1122 LIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDE----LKSRAIDISSQLNEKQQQLI 1197 (1872)
Q Consensus 1122 Ll~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~----LQsk~~Dves~Ln~~~~~e~ 1197 (1872)
+..+++..+-.+..+.-.....+...-.++..++++-.-.+.+.|=....+++..+ .-..+-.+...++..=..+-
T Consensus 396 ~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~ 475 (716)
T KOG4593|consen 396 RLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEH 475 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455544444322222222222222222211 22334445555555556666
Q ss_pred hhhhhhhHHHHHHHHHh--hhHHHH-HHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchh
Q 000199 1198 DFDQQNSEMIQKIAELT--SENQAL-MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN 1274 (1872)
Q Consensus 1198 e~~~enSeL~~~~~~L~--~en~a~-mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLd 1274 (1872)
++.+.++.|.....+|- -.-... ---+.+|..+ +..++.|=+.+| . .-.-..|....+
T Consensus 476 ~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke--------------~~~Le~En~rLr---~--~~e~~~l~gd~~ 536 (716)
T KOG4593|consen 476 ELKDLQSQLSSREQSLLFQREESELLREKIEQYLKE--------------LELLEEENDRLR---A--QLERRLLQGDYE 536 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--------------HHHHHHHHHHHH---H--HHHHHHHhhhhh
Confidence 67777777776666541 110000 0001111111 333444433333 3 334456778888
Q ss_pred hhhhhhhcccccch--HHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhh-hhHHHHHHHHHH-HHHHHHHH
Q 000199 1275 EKHCQLLDLDQQKS--ELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLA-VDVRLIFTRTQY-EAWVEELV 1350 (1872)
Q Consensus 1275 Ek~~qL~~~d~~~~--EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A-~dvriiF~KeQY-EtkvqEL~ 1350 (1872)
++.+.++.|-.... ==...|++...|..+++ .|..-|..|++--++ .|+-|+|-.-.- --.|..|+
T Consensus 537 ~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~----------~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk 606 (716)
T KOG4593|consen 537 ENITRVLHMSTNPTSKARQIKKNRLEELQAELE----------RLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLK 606 (716)
T ss_pred hhccceeeecCCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHH
Confidence 99999988844444 22344556666666655 333344444433333 555555544332 23455566
Q ss_pred HHHhhchhhH
Q 000199 1351 QQVYSTDRLL 1360 (1872)
Q Consensus 1351 qQL~~Skk~~ 1360 (1872)
+|+.+.-+-.
T Consensus 607 ~ev~s~ekr~ 616 (716)
T KOG4593|consen 607 KEVESAEKRN 616 (716)
T ss_pred HHHHHHHHHH
Confidence 6665554433
No 104
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=79.52 E-value=1.9e+02 Score=36.95 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=23.3
Q ss_pred hHhhhhHHHHhhhchhhhhhhhhcccccc
Q 000199 1259 RDELKNVVTDLTSQLNEKHCQLLDLDQQK 1287 (1872)
Q Consensus 1259 reeLE~~V~~L~skLdEk~~qL~~~d~~~ 1287 (1872)
..++|.++.-|+.-|-.|+++|..+.-.+
T Consensus 387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek 415 (511)
T PF09787_consen 387 WNELESRLTQLTESLIQKQTQLESLGSEK 415 (511)
T ss_pred cHhHHHHHhhccHHHHHHHHHHHHHHhhh
Confidence 46899999999999999999996665443
No 105
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.77 E-value=1.1e+02 Score=39.15 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=60.5
Q ss_pred HHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhH
Q 000199 1222 VSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLE 1301 (1872)
Q Consensus 1222 v~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLe 1301 (1872)
..|+|-..+-+.+.+.+.-=-..|..+++.+..+..++...-..+.++...+++.+.+|-.++....++..|+.++..+.
T Consensus 280 ~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~ 359 (563)
T TIGR00634 280 TEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLE 359 (563)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33333333333444444444555778888888888888888888888888888888888888888888888888877777
Q ss_pred hhhh
Q 000199 1302 SEKS 1305 (1872)
Q Consensus 1302 se~S 1305 (1872)
.++.
T Consensus 360 ~~l~ 363 (563)
T TIGR00634 360 EELD 363 (563)
T ss_pred HHHH
Confidence 7665
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.54 E-value=99 Score=33.61 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=76.3
Q ss_pred hhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHH
Q 000199 1257 SLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLI 1336 (1872)
Q Consensus 1257 slreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvrii 1336 (1872)
.=++++.-++..+..++....... ..+.+.+.+|+.+++ .++. .|..+...|.+.++.+...+=+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~----------~~~E~EI~sL~~K~~--~lE~-eld~~~~~l~~~k~~lee~~~~~- 72 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQEN----------EQKEQEITSLQKKNQ--QLEE-ELDKLEEQLKEAKEKLEESEKRK- 72 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhHHHHH-
Confidence 334455555555555555554443 333344444444444 2222 13367778888888877754333
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHH
Q 000199 1337 FTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRS 1400 (1872)
Q Consensus 1337 F~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLes 1400 (1872)
-.-+++..+|+-|-.+|--+++.+.+...|+.++.-..++.-..=...-.+...+..++.+|..
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2334999999999999999999999999999888765544322222222234444444444443
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.27 E-value=40 Score=35.97 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhh
Q 000199 1344 AWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQS 1423 (1872)
Q Consensus 1344 tkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AEl 1423 (1872)
++|-+|.++-.-...+.+.+..++.....++.+-...=...-++++.+...+..+++...++-.+.+.+..+....+.|+
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999998888898988888888777776655555556667777777777777777777777777777877777777
Q ss_pred hhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhh
Q 000199 1424 EEYKSRAETMADNYGEHKSQLALEVERMKQLL 1455 (1872)
Q Consensus 1424 EE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL 1455 (1872)
.--|......-..|.-+..+-..|+++||.=|
T Consensus 118 ~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 118 QKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888888888888889999988754
No 108
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=76.85 E-value=95 Score=34.38 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=80.7
Q ss_pred chhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000199 458 ADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1872)
Q Consensus 458 t~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1872)
++.|+++-....++|+...+.|++.+..+ -+|+....+-.+ |-.. .|...+.+-+.+.+
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~----~e~e~~L~~Ar~--------------EA~~---Ii~~A~~~a~~~~~ 88 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAEKLKEDAALLF----EQTNAQIKKLET--------------LRSQ---MIEESNEVTKKIIQ 88 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--------------HHHH---HHHHHHHHHHHHHH
Confidence 46788888888889998888888765544 445544333222 2222 78888888999999
Q ss_pred HHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 000199 538 DVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQVLSMYQTN 603 (1872)
Q Consensus 538 el~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeefk~LS~Qm~S~fe~N 603 (1872)
+...++....+-+....+...++|+++ |...|+.++--||++++|.|=..
T Consensus 89 ea~~eA~~ea~r~~~~A~~~Ie~Ek~~----------------Al~elr~eva~Lav~iAsk~~~~ 138 (154)
T PRK06568 89 EKTKEIEEFLEHKKSDAIQLIQNQKST----------------ASKELQDEFCDEVIKLVSEYFQS 138 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777777777654 55678999999999999999543
No 109
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.77 E-value=1.7e+02 Score=34.97 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000199 1038 SKQTISELTEENRALMVALQDKSEESVKLALEV 1070 (1872)
Q Consensus 1038 tK~~~~el~~En~al~~slqdk~ees~~~~~El 1070 (1872)
.+.....|++-|+.|+.+|||-..-|.+-|+++
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~l 43 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKL 43 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHH
Confidence 344455666666666666666666665555554
No 110
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.15 E-value=1.6e+02 Score=34.18 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=58.9
Q ss_pred HHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHH----HHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHH
Q 000199 1009 VELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA----LMVALQDKSEESVKLALEVDSFKQSFQSLHDEL 1084 (1872)
Q Consensus 1009 ~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a----l~~slqdk~ees~~~~~El~slK~s~qSLhdEl 1084 (1872)
.+.+.+.++...+..+...+..|+.|+.+ +++.+..+.+. .-..++.--.+--.+...|+|+..||-.||.--
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek---~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEK---TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 55788888899999999999999999988 45555554432 233344444455567788999999999999877
Q ss_pred HHHHHhhhhH
Q 000199 1085 LVERSLRDDL 1094 (1872)
Q Consensus 1085 ~aersl~edl 1094 (1872)
...+.-.++.
T Consensus 100 ek~K~vi~~~ 109 (207)
T PF05010_consen 100 EKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHH
Confidence 6666555444
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.06 E-value=45 Score=35.27 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=77.2
Q ss_pred HHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHH---HHHhhhccHHHHhhhhhh
Q 000199 1392 LTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVER---MKQLLVGSEEEIDDLMMS 1468 (1872)
Q Consensus 1392 l~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~---lK~LL~~~eeeid~l~~~ 1468 (1872)
...|.++++++.............-..++.+++.........-..|-.+-.+|+-.+.. +|.=+.....+|..|.-.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE 81 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888777777777888888877777778888888888888876554 444455555555555555
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHH
Q 000199 1469 REELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELR 1511 (1872)
Q Consensus 1469 k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~ 1511 (1872)
.+-+...+-..++...+++. .+-.|+..++.+|.||.
T Consensus 82 ~~~a~~~l~~~e~sw~~qk~------~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 82 AESAKAELEESEASWEEQKE------QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 55555555444555544433 34467777777777775
No 112
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.03 E-value=1.8e+02 Score=39.21 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=83.8
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHH----hhhhhccccchHHHHHHHHH
Q 000199 1175 SDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEE----SSRLASEGNTSKETLQSLRD 1250 (1872)
Q Consensus 1175 ~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee----~aq~a~e~~~Lk~~L~Sl~e 1250 (1872)
.-.||++|.-++.+|.+.+-...-.-..|.+|+..++.+.++|....-.++|+-.+ ..|+-.+..++|-.+..
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~e--- 505 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEE--- 505 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---
Confidence 45678888888888888888888888889999999999999999998888887633 34555555555544332
Q ss_pred HHhhhhhhhHhhhhHHHHhhhchh--hhhhhh--hcccccchHHHHHHHHHhhhHhhhhhh
Q 000199 1251 ELQSERSLRDELKNVVTDLTSQLN--EKHCQL--LDLDQQKSELVQLKLLVLDLESEKSRA 1307 (1872)
Q Consensus 1251 El~~erslreeLE~~V~~L~skLd--Ek~~qL--~~~d~~~~EL~~Lk~qvsdLese~S~~ 1307 (1872)
+=..|.-++.+|. |++-++ +.+-+...|+.||+.+.-.|-.-.++.
T Consensus 506 -----------al~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 506 -----------ALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred -----------HHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443 344455 445777888999999888887766654
No 113
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=75.90 E-value=23 Score=39.50 Aligned_cols=152 Identities=15% Similarity=0.255 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHhh----cc---hhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhc-cccc
Q 000199 707 ASGEIRLMKERMDELSHQLE----LS---TESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNL-QDVT 778 (1872)
Q Consensus 707 a~~~i~~mker~~~l~~ql~----~s---~~~~~~l~~~l~~a~d~~~~l~e~~~~~i~kc~d~a~~nq~lea~l-q~~~ 778 (1872)
+...|..+..||++|+.++= .. ++.---.+.+.+.+|.-+.+=+|-=-.|+-|++++ |..|.-+. .+++
T Consensus 3 ~~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL---~~YLDP~~~e~~~ 79 (174)
T PF07426_consen 3 EMSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEEL---NKYLDPNFIEEIQ 79 (174)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HHHcCchhhhhcc
Confidence 35678999999999999992 11 22222345577788888877777777888888887 55665442 2222
Q ss_pred hhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHH
Q 000199 779 CENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQ 858 (1872)
Q Consensus 779 ~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq 858 (1872)
--+..=.+=|--.|-.+..+ -+|-+.-..|.-.|.-+. +| ..-.+.++|..++.+..+.+
T Consensus 80 l~~~~K~~~ILa~e~~i~~~-------~~~Leki~~L~pvL~se~-----i~--------~vp~~~~kL~~L~~~~~~Q~ 139 (174)
T PF07426_consen 80 LPDSAKLQIILAEEDEIKST-------AELLEKIKSLEPVLDSES-----IR--------NVPELCDKLQKLSQIHLEQQ 139 (174)
T ss_pred cchHHHHHHHHHccHHHHHH-------HHHHHHHHHhhhhcCcHH-----Hh--------hhHHHHHHHHHHHHHHHHHH
Confidence 11111111111122222222 334444445554444333 22 24456788999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCccc
Q 000199 859 RTINNLQNKMHDMLSSYGESFSE 881 (1872)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~~ 881 (1872)
.-+..|.+.++.++..|+.=|..
T Consensus 140 e~~~~ls~~~~~Ll~~YN~ii~~ 162 (174)
T PF07426_consen 140 EESEELSEEVQELLQQYNKIILL 162 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986655
No 114
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.53 E-value=94 Score=32.96 Aligned_cols=104 Identities=24% Similarity=0.341 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--hHHHHHhHHHhhhhhhhhHHhHHHHHHHHH
Q 000199 460 SVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE-NQRH--MLGELQNLRNEHSSCLYTVSSAKAEIEAMR 536 (1872)
Q Consensus 460 ~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ-~q~q--~~~ElqnLr~EhS~~l~tIs~Leaqve~Le 536 (1872)
.++.+|..+...++.|......+...|..++..+....+..|. .+++ ....|..++.+++..=..|..|++..++..
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444444444444444444444333332 1111 114477788888888888888888888888
Q ss_pred HHHHHHHHHHhhhHhHHHhhhHHHHHh
Q 000199 537 LDVDEQVLRFSEERRDLESLNKELERR 563 (1872)
Q Consensus 537 eel~~Q~~rF~eDl~a~~~~kvEqEqR 563 (1872)
..+...-..+.+-...+.....+.++|
T Consensus 87 ~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 87 AELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 887766666666666655555555554
No 115
>PRK09039 hypothetical protein; Validated
Probab=74.49 E-value=1.4e+02 Score=36.41 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhh
Q 000199 1335 LIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH 1414 (1872)
Q Consensus 1335 iiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~n 1414 (1872)
.||-=.|| -|.+|++--++-+.++..+.-+ |-..+.- ...+++.|...|..|++.+.++-+.+-.|-.
T Consensus 35 ~~f~~~q~-----fLs~~i~~~~~eL~~L~~qIa~----L~e~L~l---e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 35 TVFVVAQF-----FLSREISGKDSALDRLNSQIAE----LADLLSL---ERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHH----HHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 4667777767767766666444 2222222 2346778888888888888877777666666
Q ss_pred hhhhh-------hhhhhhhhhhhHHhhhhhhhhh---hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 000199 1415 ENNSL-------IAQSEEYKSRAETMADNYGEHK---SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLA 1484 (1872)
Q Consensus 1415 and~~-------~AElEE~Kqr~E~~l~~~~Eek---~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~ 1484 (1872)
.|... .+.+.....++.+....|.+.. ..+.-+|+.||.=|...+.+|+...-...+...+.--|+.+|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 103 LLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 2222344444444445555442 3344455555555555555555554444444444444444444
Q ss_pred hh
Q 000199 1485 EQ 1486 (1872)
Q Consensus 1485 e~ 1486 (1872)
..
T Consensus 183 ~a 184 (343)
T PRK09039 183 VA 184 (343)
T ss_pred HH
Confidence 44
No 116
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=73.98 E-value=4.2e+02 Score=37.99 Aligned_cols=109 Identities=21% Similarity=0.309 Sum_probs=77.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHH--
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMR-- 536 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Le-- 536 (1872)
..++..|.....-|+-+|..-++++..|...+.--+-+-..+++.++ .+.+..+|+.||..|.-.|+.+...|..+.
T Consensus 219 e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k-~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~ 297 (1294)
T KOG0962|consen 219 EVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEK-LLKQVKLLDSEHKNLKKQISRLREKILKIFDG 297 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 67788888888888889888888888887777666555554554433 346788899999999999999999887443
Q ss_pred --HHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHH
Q 000199 537 --LDVDEQVLRFSEERRDLESLNKELERRAVSAE 568 (1872)
Q Consensus 537 --eel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AE 568 (1872)
.++.+=...|++=...+...-.+.|++--.++
T Consensus 298 t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 298 TDEELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred chHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23444455566655555555555555555554
No 117
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.85 E-value=35 Score=40.43 Aligned_cols=129 Identities=23% Similarity=0.292 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHh-------hhccHHHHhhhhhhh
Q 000199 1397 TLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQL-------LVGSEEEIDDLMMSR 1469 (1872)
Q Consensus 1397 eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~L-------L~~~eeeid~l~~~k 1469 (1872)
+|+++|+..-..||.|...|..|+.|++-.|-+.+..-...----+++..++.+.+.. +..+|--=|+|--.|
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 3556666666679999999999999999888888776444333337777777666554 444444556676666
Q ss_pred hhHHHHHHHHHHHHHhhhHHHhccccchhH-------HHHHHHHhHHHHHHHHHHHhhhhhhc
Q 000199 1470 EELEIKVVVLKAKLAEQHAQVISSEGYIDE-------QKMLQNQCNELRRKLSEQILKTEEFR 1525 (1872)
Q Consensus 1470 ~e~ei~~~vlk~kl~e~~~~i~~~~~~~~e-------l~~l~~~~~el~qklseqilkteefk 1525 (1872)
-.-++...-+..+|+.--..+-.|+.-.|| ...||....+|+|-||=+.-.||-=|
T Consensus 129 Rati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E~pR 191 (333)
T KOG1853|consen 129 RATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPR 191 (333)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 666666666667777666666666554444 45778888889999888776666554
No 118
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.87 E-value=4.1e+02 Score=36.64 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=66.5
Q ss_pred HHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh-------hhhhhhHH
Q 000199 1360 LTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE-------EYKSRAET 1432 (1872)
Q Consensus 1360 ~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE-------E~Kqr~E~ 1432 (1872)
..+|+.|+-|+..-++.--.+=-.--++|..|-..|..+.-+.......-+.....++.++.|+. +-+-.+.+
T Consensus 440 h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 440 HADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667777777666655544444667889999999999999999999999999999999999988 22223466
Q ss_pred hhhhhhhhhhhhHHHHHH
Q 000199 1433 MADNYGEHKSQLALEVER 1450 (1872)
Q Consensus 1433 ~l~~~~Eek~k~a~Eve~ 1450 (1872)
..++++....++...+.+
T Consensus 520 ~~qs~~~~~~~l~~~l~~ 537 (980)
T KOG0980|consen 520 LAQSHNNQLAQLEDLLKQ 537 (980)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 677777766555554443
No 119
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.23 E-value=4.1e+02 Score=36.28 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=33.9
Q ss_pred HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHH
Q 000199 1152 VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEK 1192 (1872)
Q Consensus 1152 ~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~ 1192 (1872)
.+.+++...+..|..+|+..+..+.++-.++.+++..|...
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 45677888899999999999999888888888888877654
No 120
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=69.66 E-value=17 Score=36.47 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=58.6
Q ss_pred eeecccccccccc---eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh--hcCCC
Q 000199 22 FHATHIQQTGWDK---LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV--AMGSS 96 (1872)
Q Consensus 22 FhAtqVp~~gwd~---L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV--s~GSs 96 (1872)
+.|..+|...+.. -||.|.....++.+.||. ..-.+-+..|..++.=.+.. +. .....|.| .....
T Consensus 8 ~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~-~~~~t~~P~Wne~f~f~i~~---~~-----~~~L~i~v~d~d~~~ 78 (126)
T cd04043 8 VRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTR-TIYDTLNPRWDEEFELEVPA---GE-----PLWISATVWDRSFVG 78 (126)
T ss_pred EEeECCCCCCCCCCCCceEEEEECCCCeeeeccc-EecCCCCCcccceEEEEcCC---CC-----CCEEEEEEEECCCCC
Confidence 5677777554432 356665333334444443 22234455565554322211 11 11222333 12334
Q ss_pred cccccceeecchhhcccc--cCCeeeeecCCCCCCCCeEEEEeeeec
Q 000199 97 RSSILGEATINLADYADA--SKPSTVLLPLHGGDSGTILHVTVQLLT 141 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a--~kp~~VSLPLk~cnsGtvLHVtIQ~l~ 141 (1872)
+..++|+++|+++++.-. ..+..+.+||.. .|.+ |+.|..-+
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i-~l~~~~~~ 122 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRL-LLRVSMEG 122 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeE-EEEEEEee
Confidence 789999999999986432 446678999976 4665 77766544
No 121
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.99 E-value=4.8e+02 Score=36.62 Aligned_cols=124 Identities=23% Similarity=0.159 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhh-hhHHHHHhHHHHHhHHHHHHHHHHHHHHh
Q 000199 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAR-EAQCNEENARLLTSLDTLRSELDSAIAEN 1409 (1872)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lks-Ea~~~keNaeLl~~I~eLesELeasiaek 1409 (1872)
+.-++.=.-.+|...|+++.+|+--+ ...+++-+|.+..+++.++. .+..-.|=+.|...|...+..++++-.+-
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~----~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEK----ERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667788888888887544 45666677777666655442 33333444555566666666666655554
Q ss_pred HHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHH
Q 000199 1410 RVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKV 1476 (1872)
Q Consensus 1410 R~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~ 1476 (1872)
....+.|..+..|.|+.+ .|+...|..|++.+.+|+.|...=.+++.++
T Consensus 811 ek~~~e~e~l~lE~e~l~------------------~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELE------------------KEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555443 3444444455555555555444444443333
No 122
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=68.64 E-value=4.3 Score=40.51 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=37.3
Q ss_pred hhhh-hcCCCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEeeee
Q 000199 88 KFVV-AMGSSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQLL 140 (1872)
Q Consensus 88 kfVV-s~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~l 140 (1872)
.|.| .-+..+..++|.+.|+|++......-..-.+||.+...|+| |+++|..
T Consensus 57 ~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i-~~~~~~~ 109 (111)
T cd04052 57 TVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRI-RISALWK 109 (111)
T ss_pred EEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEE-EEEEEEe
Confidence 3444 33434789999999999999765444567889988655555 9988764
No 123
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.16 E-value=2e+02 Score=37.05 Aligned_cols=143 Identities=24% Similarity=0.345 Sum_probs=99.5
Q ss_pred HHHHHHhhhccHHHHHHHHhhh-------hHHhhhhhhhhhHHHHHHHHHHHHH----------HhhcchhHHH------
Q 000199 1008 EVELQQLSSKNRDLAQEILALQ-------VVTEEFDRSKQTISELTEENRALMV----------ALQDKSEESV------ 1064 (1872)
Q Consensus 1008 e~elq~l~s~n~~l~~~i~~l~-------~v~~E~~~tK~~~~el~~En~al~~----------slqdk~ees~------ 1064 (1872)
+..+|.|...|--|..++.+|+ ..+.=++++|..+.+|-+++-.+|. -||.....+-
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEs 409 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQES 409 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666554 3445578888888888888766653 2222222222
Q ss_pred -----HHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHH----hhhHhhhh
Q 000199 1065 -----KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTA----VLTKENQD 1135 (1872)
Q Consensus 1065 -----~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~----~dlEea~s 1135 (1872)
-+-.||+.+|+.+-+|+..-.++++.++.-.+.-...-.-|+.|...+.-+.+.+-+|=+... ....++.+
T Consensus 410 r~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~ 489 (527)
T PF15066_consen 410 RNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKET 489 (527)
T ss_pred HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999999999988888888888899999888777777777733332 23446667
Q ss_pred hHHhhhhhhHHHHHH
Q 000199 1136 LMVSLQNKSEEAAKL 1150 (1872)
Q Consensus 1136 l~~~Lls~sEe~~k~ 1150 (1872)
+..+++++.++..+-
T Consensus 490 ~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 490 REQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888777643
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.04 E-value=2.3e+02 Score=32.67 Aligned_cols=215 Identities=17% Similarity=0.222 Sum_probs=111.7
Q ss_pred HHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhH
Q 000199 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSE 1145 (1872)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sE 1145 (1872)
+=.+++....-+..+...+.....-....+..+..|.-.+.-....|............++..-...+.. . +
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de----~----e 77 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE----S----E 77 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH----H----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----H----H
Confidence 4456677777777777777777777777777777777666655555544433333332222111111111 0 0
Q ss_pred HHHHHH-HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHH
Q 000199 1146 EAAKLA-VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSL 1224 (1872)
Q Consensus 1146 e~~k~a-~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L 1224 (1872)
..++-. .........|..|..+|.......+....++.++..-|...-......-.......+.+..|..+-..+-..
T Consensus 78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~- 156 (237)
T PF00261_consen 78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN- 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH-
Confidence 011111 112235667777777777777777777777777777766655555444444444444444443222222111
Q ss_pred hHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhh
Q 000199 1225 QEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEK 1304 (1872)
Q Consensus 1225 ~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~ 1304 (1872)
|.+++---..--.--+.++.++..|+.+|.+-.+..... ...+..|..++.+|+-++
T Consensus 157 --------------------lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a---E~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 157 --------------------LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA---ERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 222222111111222566666667777776666555322 244566666666666666
Q ss_pred hhhhhhcc
Q 000199 1305 SRASEESS 1312 (1872)
Q Consensus 1305 S~~~~kts 1312 (1872)
.....+..
T Consensus 214 ~~~k~~~~ 221 (237)
T PF00261_consen 214 EKEKEKYK 221 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65443333
No 125
>PRK11281 hypothetical protein; Provisional
Probab=67.95 E-value=5.2e+02 Score=36.66 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=74.7
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh--------------------hhhhhhHHh-----hhhhh
Q 000199 1384 CNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE--------------------EYKSRAETM-----ADNYG 1438 (1872)
Q Consensus 1384 ~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElE--------------------E~Kqr~E~~-----l~~~~ 1438 (1872)
.++.|.+|+..+...-..++....+++..-+.++.+..-.. ..++++-.. +.+..
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~~~i 362 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRI 362 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHHHHH
Confidence 44678888888888888888888887766666665544333 122222111 11111
Q ss_pred hhhhhhHHHHHHHHHhhhccHHHHhhhh------hhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHH---HH---
Q 000199 1439 EHKSQLALEVERMKQLLVGSEEEIDDLM------MSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQ---NQ--- 1506 (1872)
Q Consensus 1439 Eek~k~a~Eve~lK~LL~~~eeeid~l~------~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~---~~--- 1506 (1872)
-+-+-...++++.+.-|.+...-|++|. ++.++..+..-.|+.+-+=+..-+.++..+..++.+|+ +|
T Consensus 363 Adlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~ 442 (1113)
T PRK11281 363 ADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLS 442 (1113)
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222345555555666666566665 55555555545555554444444556677777888876 33
Q ss_pred -hHHHHHHHHHHHh
Q 000199 1507 -CNELRRKLSEQIL 1519 (1872)
Q Consensus 1507 -~~el~qklseqil 1519 (1872)
..++...|.+|++
T Consensus 443 ~~~~l~~~L~~~lf 456 (1113)
T PRK11281 443 VSDSLQSTLTQQIF 456 (1113)
T ss_pred HHHHHHHHHHHhhh
Confidence 2344445555553
No 126
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.94 E-value=25 Score=34.18 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=44.9
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
+..|.-|+.-+..+.|+..+...++-+|++.=--=.++-++.-.++..||.|-++|+.|++..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578889999999999999999888888875443344455556666666666666666655443
No 127
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=67.39 E-value=5.6 Score=40.24 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred eecccccccc---cceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh-hc-CCCc
Q 000199 23 HATHIQQTGW---DKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-GSSR 97 (1872)
Q Consensus 23 hAtqVp~~gw---d~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-GSsk 97 (1872)
.|..+|..+. ---||.|- .|+...||. ..-.+-+..|...++=.+ .+..++...+....|.| .- ..++
T Consensus 7 ~A~~L~~~d~~g~~dpYv~v~---l~~~~~kT~-v~~~t~nP~Wne~f~F~v---~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 7 QARGLLCKGKSGTNDAYVIIQ---LGKEKYSTS-VKEKTTSPVWKEECSFEL---PGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred ECcCCcCCCCCcCCCceEEEE---ECCeeeeee-eecCCCCCEeCceEEEEe---cCcccCCCcCCEEEEEEEEccccCC
Confidence 4555554322 22344442 365555433 333345666766532111 11111122333444444 22 2346
Q ss_pred ccccceeecchhhccc-ccCCeeeeecCCCCC-----CCCeEEEEee
Q 000199 98 SSILGEATINLADYAD-ASKPSTVLLPLHGGD-----SGTILHVTVQ 138 (1872)
Q Consensus 98 sgiLGEasinlAdY~~-a~kp~~VSLPLk~cn-----sGtvLHVtIQ 138 (1872)
..++|.+.|.+++... ...+....+||...+ ..+-|||+||
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 7899999999999763 345677889996432 3467889887
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.33 E-value=4e+02 Score=35.04 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1872)
..+..++-+|..+|..+..+.+.+..+..++.-.++.+.++++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555444444444444333
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.44 E-value=2.4e+02 Score=32.24 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=84.6
Q ss_pred cccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 000199 1284 DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTEL 1363 (1872)
Q Consensus 1284 d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eEl 1363 (1872)
..|..-...+|+=|+|+|..+-.. |++|+.++.+|+....+..=.+.=+... -..|..=|.-...-.+++
T Consensus 5 ~~He~af~~iK~YYndIT~~NL~l------IksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL 74 (201)
T PF13851_consen 5 KNHEKAFQEIKNYYNDITLNNLEL------IKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEEL 74 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHH
Confidence 355666788899999999998854 4689999999997665532222211111 112222222222333333
Q ss_pred HhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhh
Q 000199 1364 HTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEH 1440 (1872)
Q Consensus 1364 q~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Ee 1440 (1872)
++++.+.+. .--.=..+..++.+++.++...--+...|-.++..+..|-++...+.+.++.++-..
T Consensus 75 ~k~L~~y~k-----------dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 75 RKQLKNYEK-----------DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322221 111112345567778888888888899999999999999998888888888777655
No 130
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.12 E-value=12 Score=40.59 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=60.5
Q ss_pred hhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCChH
Q 000199 305 LEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWE 384 (1872)
Q Consensus 305 Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~e 384 (1872)
+.+....|..|+.++..|......+..+|.+|++.+..+ +|...|..|+.|+..+...++.|++....+...+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-----el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~ 148 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-----ELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE 148 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 444455788888898888888888888888888777654 899999999999999999999999865555443333
Q ss_pred HH
Q 000199 385 AV 386 (1872)
Q Consensus 385 el 386 (1872)
.+
T Consensus 149 ~~ 150 (169)
T PF07106_consen 149 KL 150 (169)
T ss_pred HH
Confidence 33
No 131
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=65.81 E-value=9.2 Score=38.70 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=40.4
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCC---CCCCeEEEEeeeecCCCCch
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPLHGG---DSGTILHVTVQLLTSKTGFR 147 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~c---nsGtvLHVtIQ~l~~~~~~r 147 (1872)
.+..++|.+.+++++... .....+.+||... ..++-||+.++...+.++..
T Consensus 70 ~~d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 70 GRNRLIGSATVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred CCCceEEEEEEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 467899999999999886 4667888999533 34679999999998876543
No 132
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.68 E-value=85 Score=36.30 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=52.4
Q ss_pred ccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000199 1285 QQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELV 1350 (1872)
Q Consensus 1285 ~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~ 1350 (1872)
+..+|+..||.|..|.--+.+ -|.++|-+|..+|++....+.+.+-++......+.++=.+|.
T Consensus 7 qk~GEIsLLKqQLke~q~E~~---~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE 69 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVN---QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELE 69 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Confidence 346789999999988776655 588888899999999999999999999888888877766654
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.27 E-value=35 Score=38.00 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=38.9
Q ss_pred hhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHh
Q 000199 997 HTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQS 1076 (1872)
Q Consensus 997 ~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s 1076 (1872)
.+++-..+..+..||.++--.+-.+++.|..+..-..+++. .++.+...-..+-.++..|+.-
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~-----------------~~~~~~~~l~~l~~~~~~L~~~ 131 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK-----------------ELSEKERRLAELEAELAQLEEK 131 (194)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhh-----------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888888888888887766554443332 2222223333333444444444
Q ss_pred hHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhh
Q 000199 1077 FQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQD 1135 (1872)
Q Consensus 1077 ~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~s 1135 (1872)
+..+..++.......+.+.-....|--+++.....+..+..+|..|++-.......++.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444445556666666666777788885555444444443
No 134
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.55 E-value=3.6e+02 Score=33.20 Aligned_cols=282 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHhHhhH-----------hhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccc
Q 000199 826 NGNLRRETSLLQKELETVKI-----------DFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLE 894 (1872)
Q Consensus 826 ~~~l~~e~~~~~~~~~~~k~-----------~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~ 894 (1872)
|+-|++||+.|.-+++|||. +..-+---|++||..+-.=.+.|-.+...|...++. |-.+.+....+
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~--L~aENt~L~Sk 78 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNV--LKAENTMLNSK 78 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHH--HHHHHHHHhHH
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHH
Q 000199 895 SKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQL 974 (1872)
Q Consensus 895 ~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~ 974 (1872)
-.+=..---+||-=-...|-+.---+.+.+.-.--+--++..|-.+.-+-..++-|.-.|+-++.++-.+=..-|-+-+
T Consensus 79 Le~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskae- 157 (305)
T PF14915_consen 79 LEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAE- 157 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHH-
Q ss_pred HHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHH
Q 000199 975 RFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMV 1054 (1872)
Q Consensus 975 ~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~ 1054 (1872)
|.+.-|+.+|+... .+|..+-+.|.+|-.++..|.--+.|+..
T Consensus 158 ---------------------------sK~nsLe~elh~tr---daLrEKtL~lE~~QrdL~Qtq~q~KE~e~------- 200 (305)
T PF14915_consen 158 ---------------------------SKFNSLEIELHHTR---DALREKTLALESVQRDLSQTQCQIKEIEH------- 200 (305)
T ss_pred ---------------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhh
Q 000199 1055 ALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQ 1134 (1872)
Q Consensus 1055 slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~ 1134 (1872)
-.|+-..--.+...-=+|+.+-|--++.|+.-+|+-.+|-..++-.----+..-+.+|.+.=...+.=-.+.+..+++.|
T Consensus 201 m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErN 280 (305)
T PF14915_consen 201 MYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERN 280 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred h-hHHhhhhhhHHH
Q 000199 1135 D-LMVSLQNKSEEA 1147 (1872)
Q Consensus 1135 s-l~~~Lls~sEe~ 1147 (1872)
. +|..-+-++|.+
T Consensus 281 KeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 281 KELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHH
No 135
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.35 E-value=3.3e+02 Score=32.76 Aligned_cols=203 Identities=18% Similarity=0.142 Sum_probs=119.9
Q ss_pred hHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHH
Q 000199 1116 DQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQ 1194 (1872)
Q Consensus 1116 d~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q-~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~ 1194 (1872)
-..|.+|.+.+.+-....+..+..|+.+++-+.....++.+ ...-++.+..+|+..- ..+
T Consensus 19 ~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~e--------------ek~----- 79 (258)
T PF15397_consen 19 TKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWE--------------EKE----- 79 (258)
T ss_pred HHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH--------------HHH-----
Confidence 34588888889988899999999999999988877655554 3333444443333211 001
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhH-hhhhHHHHhhhch
Q 000199 1195 QLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRD-ELKNVVTDLTSQL 1273 (1872)
Q Consensus 1195 ~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslre-eLE~~V~~L~skL 1273 (1872)
++-+ +-+.-.+..|.+-+....+|++.++.-++ +--++. =+.
T Consensus 80 ------------e~~l---------------------~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~----vqI 122 (258)
T PF15397_consen 80 ------------ESKL---------------------SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA----VQI 122 (258)
T ss_pred ------------HhHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HHH
Confidence 1111 22223344555566666777777777766 111111 022
Q ss_pred hhhhhhhhcc-cccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000199 1274 NEKHCQLLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQ 1352 (1872)
Q Consensus 1274 dEk~~qL~~~-d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQ 1352 (1872)
-+...+|-++ |.+.+||..|..++...-..+++.+-+. ++.+ ++-+-.| -
T Consensus 123 a~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k-------------~~~i----l~~~~~k------------~ 173 (258)
T PF15397_consen 123 ANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEK-------------KEEI----LSSAAEK------------T 173 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH----HHHHHHH------------H
Confidence 3333444344 6777777777777665555544432111 1111 0111111 1
Q ss_pred HhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHH
Q 000199 1353 VYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELD 1403 (1872)
Q Consensus 1353 L~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELe 1403 (1872)
++.....+-.+.+.++.+..++..++....+.-+++..|...+..|..+.+
T Consensus 174 ~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 174 QSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 223344555666888999999999999999999999999999999888765
No 136
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.89 E-value=55 Score=36.17 Aligned_cols=79 Identities=25% Similarity=0.359 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccc-----hhHHHHHHHHhHHHHHHHHHH
Q 000199 1443 QLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGY-----IDEQKMLQNQCNELRRKLSEQ 1517 (1872)
Q Consensus 1443 k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~-----~~el~~l~~~~~el~qklseq 1517 (1872)
|-..-+.-+..++...-+.+-.=++||.++|-...-+++.+.+++++|..++++ -.+...|+..+..|.++|-+.
T Consensus 20 QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 20 QAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667766666666668999999999999999999999999988554 467788999999999999999
Q ss_pred Hhhh
Q 000199 1518 ILKT 1521 (1872)
Q Consensus 1518 ilkt 1521 (1872)
|-|.
T Consensus 100 i~~l 103 (177)
T PF07798_consen 100 INKL 103 (177)
T ss_pred HHHH
Confidence 8754
No 137
>PRK10869 recombination and repair protein; Provisional
Probab=62.72 E-value=2.6e+02 Score=36.30 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhh
Q 000199 1242 KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKS 1305 (1872)
Q Consensus 1242 k~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S 1305 (1872)
-+-|..+++-|..+..|+-.--.++.++....++.+.+|..++.....+..|+.++..+..++.
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3448888889999999998888899999999999999999999888888888888888777665
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.65 E-value=80 Score=40.10 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.1
Q ss_pred hccHHHHhhhhh
Q 000199 1456 VGSEEEIDDLMM 1467 (1872)
Q Consensus 1456 ~~~eeeid~l~~ 1467 (1872)
+.++||+-||++
T Consensus 438 ~dLqEQlrDlmf 449 (493)
T KOG0804|consen 438 TDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHhHhe
Confidence 334444444443
No 139
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=61.03 E-value=13 Score=36.85 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=33.6
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEeee
Q 000199 94 GSSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQL 139 (1872)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~ 139 (1872)
..++..++|.+.+++++... ..+..+.+||..+ .|.+ |+-|..
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~-~G~~-~~~~~~ 114 (116)
T cd08376 72 TGKKDEFIGRCEIDLSALPR-EQTHSLELELEDG-EGSL-LLLLTL 114 (116)
T ss_pred CCCCCCeEEEEEEeHHHCCC-CCceEEEEEccCC-CcEE-EEEEEe
Confidence 34578999999999999876 5678999999987 4665 665543
No 140
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.74 E-value=3.2e+02 Score=31.78 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=99.0
Q ss_pred hHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000199 1264 NVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYE 1343 (1872)
Q Consensus 1264 ~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYE 1343 (1872)
..+..|..+.++++... ..+.+-+.+++...+.++.+.. .-+....+.-.+++..+.|
T Consensus 23 ~e~~~l~~k~~e~~~~~----------~~m~~i~~e~Ek~i~~~i~e~~----------~~~~~~~~~i~~~~~erdq-- 80 (207)
T PF05010_consen 23 EEEQELKKKYEELHKEN----------QEMRKIMEEYEKTIAQMIEEKQ----------KQKELSEAEIQKLLKERDQ-- 80 (207)
T ss_pred HHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH----------hhHHhHHHHHHHHHhhHHH--
Confidence 45555666666655444 4445555555555554443322 1123333444566666666
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhh
Q 000199 1344 AWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQS 1423 (1872)
Q Consensus 1344 tkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AEl 1423 (1872)
+.+-|.+..+.+..++.++..+-..++.+++||..+-+-.++...+|...+ .+|..+++--
T Consensus 81 -----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e--------------qry~aLK~hA 141 (207)
T PF05010_consen 81 -----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEE--------------QRYQALKAHA 141 (207)
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 566677888888899999999999999999999999988888888887766 5666666555
Q ss_pred hhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhc
Q 000199 1424 EEYKSRAETMADNYGEHKSQLALEVERMKQLLVG 1457 (1872)
Q Consensus 1424 EE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~ 1457 (1872)
+ .+++.+-..+..-++++.-|+..|+..|--
T Consensus 142 e---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 142 E---EKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred H---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 235555556666667777777777665543
No 141
>PRK11281 hypothetical protein; Provisional
Probab=60.53 E-value=6.9e+02 Score=35.54 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhhhhhhHH---------HHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHH
Q 000199 1178 LKSRAIDISSQLNEKQQQLIDFDQQNSEM---------IQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSL 1248 (1872)
Q Consensus 1178 LQsk~~Dves~Ln~~~~~e~e~~~enSeL---------~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl 1248 (1872)
++.....+++.+|....++.+-.-..++- ...+..+...|..+.-.|..-+.+.++...+..+-+..|+.+
T Consensus 239 ~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~ 318 (1113)
T PRK11281 239 LEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRL 318 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566666555555443333221 111333456788888888887777666666766666666655
Q ss_pred HH
Q 000199 1249 RD 1250 (1872)
Q Consensus 1249 ~e 1250 (1872)
..
T Consensus 319 ~q 320 (1113)
T PRK11281 319 TQ 320 (1113)
T ss_pred HH
Confidence 43
No 142
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=60.47 E-value=4e+02 Score=32.71 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccc
Q 000199 1161 LQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNT 1240 (1872)
Q Consensus 1161 lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~ 1240 (1872)
++++-.+..-+....+.+-.+-..+......+...=-+.-...-++-..+.+|...-++..-.++++++.+..+-..+..
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHh---hhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchh
Q 000199 1241 SKETLQSLRDELQ---SERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSL 1317 (1872)
Q Consensus 1241 Lk~~L~Sl~eEl~---~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~L 1317 (1872)
|......+.+.+. .-......++..+..|-...-.....+--=..=-..+..|++++.+-.+.+. .+..+..|
T Consensus 88 L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e----~~~~~~el 163 (294)
T COG1340 88 LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALE----ENEKLKEL 163 (294)
T ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_pred hHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHh
Q 000199 1318 QSELSEMHELLLA---VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTS 1394 (1872)
Q Consensus 1318 s~hLsElke~l~A---~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~ 1394 (1872)
..+...++..+.. .=..++=-...|-..+-++-+...-.++-.++||-+..+.-...+.+..-=...-.+...|...
T Consensus 164 ~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 164 KAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 000199 1395 LDTLRSELDSA 1405 (1872)
Q Consensus 1395 I~eLesELeas 1405 (1872)
|..|++..-+.
T Consensus 244 ik~l~~~~~~~ 254 (294)
T COG1340 244 IKALRAKEKAA 254 (294)
T ss_pred HHHHHHHHHHH
No 143
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=60.07 E-value=13 Score=36.61 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=33.6
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEee
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQ 138 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ 138 (1872)
+..++|.+.|++++.... .....-+||..+.+|-| |+.+|
T Consensus 81 ~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~~-~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK-GFIDEWLPLEDVKSGRL-HLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhccc-CccceEEECcCCCCceE-EEEEe
Confidence 788999999999998864 45678899999877776 88776
No 144
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=59.64 E-value=73 Score=41.06 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhh
Q 000199 1338 TRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN 1417 (1872)
Q Consensus 1338 ~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand 1417 (1872)
||..|..+|.+|..|+...+-- =+.+..+...|..++...+.++++...+.+..-.++.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSK---------------------a~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~ 472 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSK---------------------AVHFYAECRALQKRLESAEKEKESLEEELKEANQNIS 472 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765421 1346667788888888889999998888888888888
Q ss_pred hhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhh
Q 000199 1418 SLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMS 1468 (1872)
Q Consensus 1418 ~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~ 1468 (1872)
.+.-||+.-+.+-|.-+... ..-|..|-.=|..-.++||.|.++
T Consensus 473 ~LqDEL~TTr~NYE~QLs~M-------SEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMM-------SEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888876665544444444 444777777777778888887653
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=4e+02 Score=32.25 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc
Q 000199 1442 SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE 1494 (1872)
Q Consensus 1442 ~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~ 1494 (1872)
......++.|..+...++...++|...+.|.+..+.-++++.+..+.++..++
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788899999999999999999999999999999999988876665554
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.84 E-value=39 Score=38.69 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=50.2
Q ss_pred hhhhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHH---HHHHHHHHhh-chhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000199 299 NRLRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQN---FAQKLAAEIA-SGEQLAEEVSALKSECSHLKSDLERLIK 373 (1872)
Q Consensus 299 n~~R~~Le~AEdsIEkLKsE~~sL~Rqad~selELQt---LRKQivKEsk-rgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1872)
...|.++...+..+.+|++++.......+..-.++|. -+++.+.+.+ .-+.|..|+..++.|.+.|+.+.+.++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999887776655555554 2333344343 3556666666677777776666666654
No 147
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.08 E-value=5e+02 Score=34.51 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhHHHHHhHHHhhhhh
Q 000199 461 VGGKIFELLRELDESKAERESLAKKMDQMECYY-------------------EALIQELEENQRHMLGELQNLRNEHSSC 521 (1872)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldY-------------------E~LkQeLEQ~q~q~~~ElqnLr~EhS~~ 521 (1872)
..+++.+|...+...+.++...+-+.+++...- ...++.|.+...+...++..|...+..-
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~ 314 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLAN 314 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 346788888888888888877777766655332 2445566665555556667777888888
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHh
Q 000199 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERR 551 (1872)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~eDl~ 551 (1872)
-..|..+++|+..++..+..++.++...+.
T Consensus 315 hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~ 344 (754)
T TIGR01005 315 HPRVVAAKSSLADLDAQIRSELQKITKSLL 344 (754)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998877653
No 148
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.91 E-value=3.9e+02 Score=31.84 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhh
Q 000199 1442 SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQ 1486 (1872)
Q Consensus 1442 ~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~ 1486 (1872)
+.+-.|+..+|.=.++++.++.+|+--..+++=....|+.++..+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444443333333333333
No 149
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.15 E-value=7.8e+02 Score=35.07 Aligned_cols=356 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc--cccc
Q 000199 1097 AVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG--ERSL 1174 (1872)
Q Consensus 1097 ~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~--~~~~ 1174 (1872)
+-.++-.+|+.....=..-+..-.+.++...+-+.+.+..-.+...+...+...--....++..++.+.+.... ....
T Consensus 24 ~~~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s 103 (1109)
T PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS 103 (1109)
T ss_pred CHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH-hhhHHHHHHHHhHhHHHhhhhhccccchHH--------HH
Q 000199 1175 SDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL-TSENQALMVSLQEYAEESSRLASEGNTSKE--------TL 1245 (1872)
Q Consensus 1175 ~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L-~~en~a~mv~L~d~kee~aq~a~e~~~Lk~--------~L 1245 (1872)
...|........+.|..-+.+..++-..-++....+..+ +.. .+....+++.+..-....++...+.. -+
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~ 182 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAES 182 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHH
Q 000199 1246 QSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1872)
Q Consensus 1246 ~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElk 1325 (1872)
..+..++..++..-......-.-+..+.+....++ .++..++..|...+++++.+-+
T Consensus 183 ~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~----------~~l~~~~~~Lq~~in~kR~~~s------------- 239 (1109)
T PRK10929 183 AALKALVDELELAQLSANNRQELARLRSELAKKRS----------QQLDAYLQALRNQLNSQRQREA------------- 239 (1109)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-------------
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHH
Q 000199 1326 ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSA 1405 (1872)
Q Consensus 1326 e~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeas 1405 (1872)
+.+.+...+.. +.....-.+=...++.|.+|...|...--.++..
T Consensus 240 e~~~~~~~~~~-----------------------------------~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 240 ERALESTELLA-----------------------------------EQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHhH-----------------------------------HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHhhhhhhhhhhhhh--------------------hhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhh
Q 000199 1406 IAENRVLFHENNSLIAQSE--------------------EYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDL 1465 (1872)
Q Consensus 1406 iaekR~L~nand~~~AElE--------------------E~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l 1465 (1872)
..+++.--+.++.+..-.- ..++++-..-.- .++..+++.++-=.+.++++.|++
T Consensus 285 ~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~-----~~l~~~IAdlRl~~f~~~q~~~~l 359 (1109)
T PRK10929 285 ASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKP-----QQLDTEMAQLRVQRLRYEDLLNKQ 359 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCccc-----chhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred h------------hhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHH
Q 000199 1466 M------------MSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSE 1516 (1872)
Q Consensus 1466 ~------------~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qklse 1516 (1872)
. ++.++..+..-+|+.+-+=+..-+.++..+..|+.+|+--.+.|++.+.+
T Consensus 360 ~~i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~ 422 (1109)
T PRK10929 360 PQLRQIRQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKE 422 (1109)
T ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 150
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.65 E-value=2.5e+02 Score=32.22 Aligned_cols=55 Identities=31% Similarity=0.318 Sum_probs=34.9
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhh-----HHhhhhhhhhhHHHHHHHHHHHHHHhh
Q 000199 1003 DLDYLEVELQQLSSKNRDLAQEILALQV-----VTEEFDRSKQTISELTEENRALMVALQ 1057 (1872)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~-----v~~E~~~tK~~~~el~~En~al~~slq 1057 (1872)
+|..+...++.+...|..|..+|.++-. ........+.-+.++......+...++
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~ 80 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIE 80 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888877665 333444444444444444444444433
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.08 E-value=2.9e+02 Score=29.68 Aligned_cols=108 Identities=20% Similarity=0.374 Sum_probs=70.7
Q ss_pred CcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000199 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1872)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1872)
.....+=+=|.+|..-.+....-+|.|..++-.+..+.+-|....+..+ ..+..++.|....-.....++.+++++
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~----~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLK----EQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556678889999999999999999999888888888777554422 234445555555555555555555555
Q ss_pred HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHH
Q 000199 536 RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRA 574 (1872)
Q Consensus 536 eeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKt 574 (1872)
...++.+ .+++.+.+.=..+++.+.+--+||-
T Consensus 107 ~~~~k~~-------kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 107 EAKLKQE-------KEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 3456666666666666666666654
No 152
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=55.86 E-value=4.4e+02 Score=32.74 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=98.0
Q ss_pred HHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHH--HHHhhchhh
Q 000199 1291 VQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLA---------VDVRLIFTRTQYEAWVEELV--QQVYSTDRL 1359 (1872)
Q Consensus 1291 ~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A---------~dvriiF~KeQYEtkvqEL~--qQL~~Skk~ 1359 (1872)
..+.....+|-.+++.++.|+-.|-.|++-=+++..++-. +.|+ -.|+|--.--+-|. +++..-+-+
T Consensus 48 v~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~--~AkeqVsl~~~sL~~~~~~~~~~~~ 125 (426)
T KOG2008|consen 48 VEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLR--AAKEQVSLAEQSLLEDDKRQFDSAW 125 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcchhhhhHHHH
Confidence 4455667788888898999999898888877777755443 3333 34666665556666 777777777
Q ss_pred HHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHH---HhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhh
Q 000199 1360 LTELHTKNVDVETVLNSCLAREAQCNEENARLL---TSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADN 1436 (1872)
Q Consensus 1360 ~eElq~K~qDaedeln~~lksEa~~~keNaeLl---~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~ 1436 (1872)
++-+-.-.|-|-..=..|.++|.+|+.+-++++ ++|--|+-+.-.+|-. ..-
T Consensus 126 ~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkK-------------------------Srp 180 (426)
T KOG2008|consen 126 QEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRAIKK-------------------------SRP 180 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-------------------------cch
Confidence 777777777777777889999999988877654 3444444444444443 445
Q ss_pred hhhhhhhhHHHHHHHHHhhhccHHH
Q 000199 1437 YGEHKSQLALEVERMKQLLVGSEEE 1461 (1872)
Q Consensus 1437 ~~Eek~k~a~Eve~lK~LL~~~eee 1461 (1872)
|-|.|.++-+-+++.|.++.-+|-+
T Consensus 181 YfE~k~~~t~~le~qk~tv~~Leae 205 (426)
T KOG2008|consen 181 YFELKAKYTVQLEQQKKTVDDLEAE 205 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777766555544
No 153
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=55.72 E-value=18 Score=35.84 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=45.3
Q ss_pred ccCCcccCCcccchhhhhccccchhchhhhhhhhhhhcCCCcccccceeecchhhcccccCCeeeeecCC--CCCCCCeE
Q 000199 56 VRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATINLADYADASKPSTVLLPLH--GGDSGTIL 133 (1872)
Q Consensus 56 Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk--~cnsGtvL 133 (1872)
-.+-++.|...++=.+. +.+..+.=.+|. ..+..+..++|.+.+++++.........+..||. +-+. ..|
T Consensus 45 ~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d---~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~-G~i 116 (124)
T cd04044 45 KDTSNPVWNETKYILVN----SLTEPLNLTVYD---FNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV-GEL 116 (124)
T ss_pred cCCCCCcceEEEEEEeC----CCCCEEEEEEEe---cCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc-eEE
Confidence 34557888877644332 211111111111 1234477999999999999998655444666653 2223 466
Q ss_pred EEEeeee
Q 000199 134 HVTVQLL 140 (1872)
Q Consensus 134 HVtIQ~l 140 (1872)
||.++.+
T Consensus 117 ~~~l~~~ 123 (124)
T cd04044 117 NYDLRFF 123 (124)
T ss_pred EEEEEeC
Confidence 9998865
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.59 E-value=6.3e+02 Score=33.54 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhh
Q 000199 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLS 1106 (1872)
Q Consensus 1043 ~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~ 1106 (1872)
..|.+|-+.|-.+..++..++.+...+|..++...+.+-.+++.--.+...|...+..+.-..+
T Consensus 422 ~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 422 APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4778888888888888888898888899888888888888888777777777766666655443
No 155
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.48 E-value=2e+02 Score=31.52 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhh
Q 000199 1340 TQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLF 1413 (1872)
Q Consensus 1340 eQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~ 1413 (1872)
.+....+.++.+++....+.+.++..+..+....+......-....+.......++..++........+-|++.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555888888888888888888888888888888888777777777778888888888888888888877777
No 156
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.45 E-value=6.3e+02 Score=33.49 Aligned_cols=364 Identities=22% Similarity=0.216 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhh
Q 000199 1062 ESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQ 1141 (1872)
Q Consensus 1062 es~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Ll 1141 (1872)
--.-+..|=..||+-|.-+..+.-..|+..+...+++++--|. ++ +--.+-.+.+-++..+=-
T Consensus 37 yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~-------------hk----k~~~~g~e~EesLLqESa 99 (772)
T KOG0999|consen 37 YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ-------------HK----KVARDGEEREESLLQESA 99 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH----HhhccchhhHHHHHHHHH
Confidence 3455667888999999999999999999888888887765443 11 111233333444444433
Q ss_pred hhhHHHHHHH----HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhH
Q 000199 1142 NKSEEAAKLA----VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSEN 1217 (1872)
Q Consensus 1142 s~sEe~~k~a----~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en 1217 (1872)
++.+.+.... -++-|+|.-+.....+......-...+..-+.+++..=....+-.-+|-...++|++---.|..+|
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN 179 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN 179 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444222 444555555555555544444444444444444444444444444455555555554444444444
Q ss_pred HHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHH
Q 000199 1218 QALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV 1297 (1872)
Q Consensus 1218 ~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qv 1297 (1872)
--+--.+ -.-+|..-+.+.||+.+.-+++|+.=+.+--+++.+.-.+---||.|- |..+.+- +.|-
T Consensus 180 IsLQKqV----s~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEA---LeTlq~E-------Reqk 245 (772)
T KOG0999|consen 180 ISLQKQV----SNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEA---LETLQQE-------REQK 245 (772)
T ss_pred chHHHHH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhH-------HHHH
Confidence 2221111 001344445555666666666665555554444444444333344332 2222111 2233
Q ss_pred hhhHhhhhhh--hhhccccchhhHHHH--HHHhhhh---------------hhhHHHH-------HHHHHHHHHHHHHHH
Q 000199 1298 LDLESEKSRA--SEESSSVTSLQSELS--EMHELLL---------------AVDVRLI-------FTRTQYEAWVEELVQ 1351 (1872)
Q Consensus 1298 sdLese~S~~--~~ktsef~~Ls~hLs--Elke~l~---------------A~dvrii-------F~KeQYEtkvqEL~q 1351 (1872)
+-|-.+++-- ..-.+.+.+|..-|. -+.|-+. +.|++.- .--+--.+.++-|.+
T Consensus 246 ~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkq 325 (772)
T KOG0999|consen 246 NALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQ 325 (772)
T ss_pred HHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHH
Confidence 3333444311 111222222322222 1112111 1233221 112334677899999
Q ss_pred HHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHh----H-----------------
Q 000199 1352 QVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAEN----R----------------- 1410 (1872)
Q Consensus 1352 QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaek----R----------------- 1410 (1872)
||-+--+-..++..-++|.-+.+++-.-.=.....+-.+|...|.-|.- |++++-.+ |
T Consensus 326 qL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~r-lq~~~d~kgEk~rdg~~kad~~e~~l~a~e 404 (772)
T KOG0999|consen 326 QLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRR-LQDSKDKKGEKGRDGGEKADLYEVDLNALE 404 (772)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH-hHHhhhhhccccccccccchhHHhhhhhHH
Confidence 9999999999999999999999998855555666777777777776642 33333221 1
Q ss_pred HhhhhhhhhhhhhhhhhhhhHHhh--hhhhhhhhhhHHHHHHHHHhhhc
Q 000199 1411 VLFHENNSLIAQSEEYKSRAETMA--DNYGEHKSQLALEVERMKQLLVG 1457 (1872)
Q Consensus 1411 ~L~nand~~~AElEE~Kqr~E~~l--~~~~Eek~k~a~Eve~lK~LL~~ 1457 (1872)
-+...|.+..+|+-+.|..+-+.- ..|.+++.++..+|.-++.=|..
T Consensus 405 ~~a~k~~~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~kl~l 453 (772)
T KOG0999|consen 405 ILACKYAVAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEKLRL 453 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 133444444444444333222211 24666666666666555544443
No 157
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.07 E-value=3.6e+02 Score=30.48 Aligned_cols=97 Identities=27% Similarity=0.318 Sum_probs=54.4
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHh--------hhhhhhhhhhhHHHHHHHHHhhhccHHH
Q 000199 1390 RLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETM--------ADNYGEHKSQLALEVERMKQLLVGSEEE 1461 (1872)
Q Consensus 1390 eLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~--------l~~~~Eek~k~a~Eve~lK~LL~~~eee 1461 (1872)
++...|..++..+..+++..+.+-..|+....+.+..-.+.... ...+-.++..+...++.++..+......
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~ 113 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQ 113 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666665555555444444433 3445555556666666666666666666
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHhh
Q 000199 1462 IDDLMMSREELEIKVVVLKAKLAEQ 1486 (1872)
Q Consensus 1462 id~l~~~k~e~ei~~~vlk~kl~e~ 1486 (1872)
++.|.-+-.+++-+.--++.|.+.+
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555555555554444
No 158
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=54.76 E-value=20 Score=36.31 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=33.4
Q ss_pred CcccccceeecchhhcccccCC-----eeeeecCC----CCCCCCeEEEEeeee
Q 000199 96 SRSSILGEATINLADYADASKP-----STVLLPLH----GGDSGTILHVTVQLL 140 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp-----~~VSLPLk----~cnsGtvLHVtIQ~l 140 (1872)
++..++|.+.|.+++......+ ....+||. ...++..||+++..|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 4778999999999999876543 23556665 345678899998754
No 159
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=54.08 E-value=8.3e+02 Score=34.45 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=99.2
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhh
Q 000199 1028 LQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSA 1107 (1872)
Q Consensus 1028 l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~e 1107 (1872)
+-+|...+..+...+.++.. ++-.|+++++..++-+.+..+.++...+.....+.++--+...
T Consensus 620 f~~~~~~l~~~~~~~ee~~~-----------------~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~ 682 (1072)
T KOG0979|consen 620 FFSVSPVLEELDNRIEEEIQ-----------------KLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTK 682 (1072)
T ss_pred hhccchHHHHHHHHHHHHHH-----------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443 3445556666665555555555544444333322222222222
Q ss_pred hhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh--HhhhhhhhhhhhhccccchHHHHhhhhhh
Q 000199 1108 KHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS--VRNSLQSVHDELHGERSLSDELKSRAIDI 1185 (1872)
Q Consensus 1108 K~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q--~e~~lqeL~~eL~~~~~~~e~LQsk~~Dv 1185 (1872)
+. +.++. ..-..+...+++.+++.+++++.+....++- -+..++++.-.++....+.+.-- +..--
T Consensus 683 ~~----------~~~~~-~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i-~~~~~ 750 (1072)
T KOG0979|consen 683 LN----------SELKS-YQQRKERIENLVVDLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGI-KEKNE 750 (1072)
T ss_pred Hh----------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 22 22211 1122233445567778888888866544333 33444555555555554444111 11122
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhh--ccccchHHHHHHHH
Q 000199 1186 SSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLA--SEGNTSKETLQSLR 1249 (1872)
Q Consensus 1186 es~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a--~e~~~Lk~~L~Sl~ 1249 (1872)
.+-|......=++.-.....++.-+..+......+...+++.+.+-++.. +.+..++....|+.
T Consensus 751 ~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~ 816 (1072)
T KOG0979|consen 751 SSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPA 816 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhcccccc
Confidence 33344444444444555566677777788888888899998886655555 44555555544443
No 160
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=53.62 E-value=1e+02 Score=38.66 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=47.9
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCChHHHhh
Q 000199 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWEAVKQ 388 (1872)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~eelkq 388 (1872)
...+..++.|+..+......+..+++.|+-++-.+.. -=..+|.+||....+==|++.-+-. .+-+++..|||
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~------~~~~~LqEEr~R~erLEeqlNd~~e-lHq~Ei~~LKq 283 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQ------FILEALQEERYRYERLEEQLNDLTE-LHQNEIYNLKQ 283 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4466777777777777777777777777777665543 3345677777777664445544444 44455666777
Q ss_pred hhc
Q 000199 389 GTE 391 (1872)
Q Consensus 389 el~ 391 (1872)
++-
T Consensus 284 eLa 286 (395)
T PF10267_consen 284 ELA 286 (395)
T ss_pred HHH
Confidence 654
No 161
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=53.32 E-value=15 Score=37.84 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=26.2
Q ss_pred CCCcccccceeecchhhccc-ccCCeeeeecCC
Q 000199 94 GSSRSSILGEATINLADYAD-ASKPSTVLLPLH 125 (1872)
Q Consensus 94 GSsksgiLGEasinlAdY~~-a~kp~~VSLPLk 125 (1872)
+.++..+||++.|.|++.-- ...++++.|||+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 35588899999999998843 357899999986
No 162
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.09 E-value=32 Score=31.23 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHH
Q 000199 488 QMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVD 540 (1872)
Q Consensus 488 QL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~ 540 (1872)
||+.||++||..-+. |..++-.=+--...|.++|..|...|.
T Consensus 2 QlE~Dy~~LK~~yd~-----------Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDS-----------LKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhc
No 163
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.84 E-value=3.9e+02 Score=32.64 Aligned_cols=140 Identities=23% Similarity=0.242 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HH----HhhhhhhhhHHhHHHHHHHH---H
Q 000199 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQN-LR----NEHSSCLYTVSSAKAEIEAM---R 536 (1872)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~Elqn-Lr----~EhS~~l~tIs~Leaqve~L---e 536 (1872)
|.-|-+++|-++-+|+-|.--.+-|++-|+.++-+||= +--.++ +- .|-++-..-|.+.+-|-..| .
T Consensus 32 iriL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eL-----laa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~ 106 (389)
T KOG4687|consen 32 IRILGQDLEKFENEKDGLAARAETLELNLEALERELEL-----LAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDR 106 (389)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH-----HHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHH
Confidence 67789999999999999999999999999999987543 111111 11 12233333344333332222 3
Q ss_pred HHHHHHHHHHhhhHhHH--HhhhHHHHHhhhhH------HH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000199 537 LDVDEQVLRFSEERRDL--ESLNKELERRAVSA------EA--ALKRARLNYSIAVNQLQKDLELLSSQVLSMYQTNENL 606 (1872)
Q Consensus 537 eel~~Q~~rF~eDl~a~--~~~kvEqEqRAI~A------Ee--ALRKtRwnnA~aaerLQeefk~LS~Qm~S~fe~NEkl 606 (1872)
+.|-+|.-.+..|-+.+ |-+..|-|.-|... |+ -.||-|-|.--+-|.||....-|.|-.-+|.+.-|-|
T Consensus 107 eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak~a~LafDLkamideKEEL 186 (389)
T KOG4687|consen 107 EALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEEL 186 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHH
Confidence 44445555555555333 22333334433333 33 3466777888899999999999999999999999999
Q ss_pred HHH
Q 000199 607 IKQ 609 (1872)
Q Consensus 607 ~~q 609 (1872)
+|.
T Consensus 187 imE 189 (389)
T KOG4687|consen 187 IME 189 (389)
T ss_pred HHH
Confidence 984
No 164
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.81 E-value=78 Score=34.89 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=72.3
Q ss_pred ccHHHHHHHHhhhhHHhhhhhhhhhHHH----------------HHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhh
Q 000199 1017 KNRDLAQEILALQVVTEEFDRSKQTISE----------------LTEENRALMVALQDKSEESVKLALEVDSFKQSFQSL 1080 (1872)
Q Consensus 1017 ~n~~l~~~i~~l~~v~~E~~~tK~~~~e----------------l~~En~al~~slqdk~ees~~~~~El~slK~s~qSL 1080 (1872)
.|..++=-|++|+.|+. -+-.+++- |+.|.|+.+-+|.|+ ...+...|++.+..-
T Consensus 3 ~~~~~~~~~~ala~~~~---~s~~a~A~~~~G~~~G~~~~~~~~LT~EQQa~~q~I~~~------f~~~t~~LRqqL~aK 73 (143)
T PRK11546 3 RNTKIALVLMALSALAM---GSGSAFAHHHWGGGHGMWQQNAAPLTTEQQAAWQKIHND------FYAQTSALRQQLVSK 73 (143)
T ss_pred cchhHHHHHHHHHHHHH---hhhHHHHhhccCCCCCCCccccccCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 46666666888888875 22233333 999999999999886 456778899999999
Q ss_pred HHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhH
Q 000199 1081 HDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQ 1117 (1872)
Q Consensus 1081 hdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~ 1117 (1872)
+.||.++...-.--.+++..|+.|+..++.+|.+.+-
T Consensus 74 r~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 74 RYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888888888888887765443
No 165
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=49.23 E-value=4.8e+02 Score=30.30 Aligned_cols=233 Identities=20% Similarity=0.247 Sum_probs=126.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhh-------------HHHHHHHhHhhHhhhhhhhhhHhHH
Q 000199 792 ESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRET-------------SLLQKELETVKIDFDELASVNKNLQ 858 (1872)
Q Consensus 792 e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~-------------~~~~~~~~~~k~~~~~~~s~~~~lq 858 (1872)
..+..-...+...|..|...-.+....|..|.-+...+|... ..++.++..++.-+..-...+..+.
T Consensus 25 ~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~ 104 (296)
T PF13949_consen 25 EKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLR 104 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444445566666677777777777777776665555553 5788888888888888777777777
Q ss_pred HHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------H
Q 000199 859 RTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEK-------D 931 (1872)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~-------d 931 (1872)
..+......+.-|....+.-...||-.+.+ .......++.+|.. .|.++-.+..+...++++- |
T Consensus 105 ~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~-----~~~~~~~~i~~L~~----ll~~l~~l~~eR~~~~~~lk~~~~~d~ 175 (296)
T PF13949_consen 105 SKLESIEENLELLSGPIEELEASLPSSSPS-----DSPQVSEVIRQLRE----LLNKLEELKKEREELLEQLKEKLQNDD 175 (296)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHS--B--------SSGSS-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHcCChhhHHhhCCCCCcc-----cccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777777766665555555544455654322 22222555556554 4566666666666655432 2
Q ss_pred HHhhhc-------cccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH--HHhHhhhhhcccc
Q 000199 932 RAEMSF-------SKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV--EENNAQRHTDLFS 1002 (1872)
Q Consensus 932 ~~~~~~-------~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~--ee~y~~~~~~l~s 1002 (1872)
+...-. ..-+.=+..--+||.-+...+-.-+..-+.|++.++...+.++...+...+. -+.+.+.-..-+.
T Consensus 176 i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~ 255 (296)
T PF13949_consen 176 ISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYD 255 (296)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 222222 0112222333456766666666666777788888888877777666553222 2223322223333
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhhHHh
Q 000199 1003 DLDYLEVELQQLSSKNRDLAQEILALQVVTE 1033 (1872)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~ 1033 (1872)
.+..+-..|.+-..==.+|...+..|..-+.
T Consensus 256 ~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~ 286 (296)
T PF13949_consen 256 AYKELSSNLEEGLKFYNDLLEILNKLQQKVE 286 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445554444444333
No 166
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.97 E-value=1.2e+02 Score=32.23 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchh
Q 000199 1203 NSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN 1274 (1872)
Q Consensus 1203 nSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLd 1274 (1872)
..+|.++...+++....+-.++++.|-..-+++.+-..|+..+++|..+-.....=.++|+.+|.++...|+
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666677777775555556666666666666666655544444444444444444444
No 167
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.91 E-value=5.4e+02 Score=30.76 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=22.6
Q ss_pred HHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhh
Q 000199 1125 KTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRA 1182 (1872)
Q Consensus 1125 ~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~ 1182 (1872)
+-+.+..+-+.+-.+.....+.. .+++..|..|+++.+.+....+.++..+
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~-------~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERI-------NSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444322 2334555555555444444444444333
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.89 E-value=9.9e+02 Score=33.80 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHh--hhccHHHHHhHhhh--hhhH--HHHHhHHHHHhHHHHHHHHHHHHHH---
Q 000199 1338 TRTQYEAWVEELVQQVYSTDRLLTELHT--KNVDVETVLNSCLA--REAQ--CNEENARLLTSLDTLRSELDSAIAE--- 1408 (1872)
Q Consensus 1338 ~KeQYEtkvqEL~qQL~~Skk~~eElq~--K~qDaedeln~~lk--sEa~--~~keNaeLl~~I~eLesELeasiae--- 1408 (1872)
-..||+.+.+.|.-++.-+++-.+++++ -++-...+..+..- .|-. ++++=+++-+.+++|...+..-.+.
T Consensus 774 ~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~ 853 (1072)
T KOG0979|consen 774 NISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALK 853 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998888874 33333333333221 2222 6777778888887766555443331
Q ss_pred ----hHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHh
Q 000199 1409 ----NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQL 1454 (1872)
Q Consensus 1409 ----kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~L 1454 (1872)
++..+..|+...+|+++..++.+.- .++...|..++-.+|+.
T Consensus 854 ~~n~ne~~vq~y~~r~~el~~l~~~~~~~----~~~le~i~~kl~~~ke~ 899 (1072)
T KOG0979|consen 854 FENVNEDAVQQYEVREDELRELETKLEKL----SEDLERIKDKLSDVKEV 899 (1072)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHhhHHHH
Confidence 4455666666666666655554432 23334444444444443
No 169
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=48.15 E-value=6 Score=50.81 Aligned_cols=185 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhhcccCCcccccccccccccccccCCHH------HHHHHHHHH
Q 000199 835 LLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLT------SVIMRLEVL 908 (1872)
Q Consensus 835 ~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~------~v~~~le~~ 908 (1872)
.|.+.+..++..++.+...+..-..-+..|+.+++.+|...+..+..++ ..+....|++ .+-..|+.|
T Consensus 81 ~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~------~~~~~~~~l~S~~~l~~l~~~l~~L 154 (619)
T PF03999_consen 81 PLKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN------PFDIDESDLPSLEELEELRQHLQRL 154 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc------cccCCCCCCCcHHHHHHHHHHHHHH
Confidence 3555555666666666555555555566777888887765433332222 1122222333 222233333
Q ss_pred HHHH---HHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHh---hhhhhhccHHHHHHHHHHHHHHhhh
Q 000199 909 QRNA---CQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRN---MIDKQSVSNALLQKLQLRFEAVADK 982 (1872)
Q Consensus 909 q~~~---c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~---m~~kl~~s~~l~qklq~~~e~~~~k 982 (1872)
+... ..+|..++.+-..+..+-+ .... ...|+.|+.+ -.+.+.+|++.+.+|+.-+..+...
T Consensus 155 ~~e~~~R~~~v~~l~~~I~~l~~~L~---~~~~---------~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~ 222 (619)
T PF03999_consen 155 QEEKERRLEEVRELREEIISLMEELG---IDPE---------RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEE 222 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CCcc---------cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3322 3333344433333333222 2221 3456666665 3567788888888777655544332
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhh
Q 000199 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSK 1039 (1872)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK 1039 (1872)
..---+-=+.|...=..|...|+-=+.+.+.....|..+.. ..|+.+-.|++|+.
T Consensus 223 k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~--~~i~~l~~El~RL~ 277 (619)
T PF03999_consen 223 KEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSL--DTIEALEEELERLE 277 (619)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchH--HHHHHHHHHHHHHH
Confidence 22111111222222233444444444444444566666654 33444556666654
No 170
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.11 E-value=7.5e+02 Score=32.19 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhh-hhhhhhcccccchHHHHHHHHHhhhHhhhh
Q 000199 1241 SKETLQSLRDELQSERSLRDELKNVVTDLTSQLNE-KHCQLLDLDQQKSELVQLKLLVLDLESEKS 1305 (1872)
Q Consensus 1241 Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdE-k~~qL~~~d~~~~EL~~Lk~qvsdLese~S 1305 (1872)
|...|-+.+.||-.--+.-..+-..|.+|.+|++- +.. +...-|..|..-+-.+.+++.
T Consensus 453 llt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k------~~l~slEkl~~Dyqairqen~ 512 (521)
T KOG1937|consen 453 LLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQK------QYLKSLEKLHQDYQAIRQEND 512 (521)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHH------HHHhhHHHHHHHHHHHHHHHH
Confidence 44455555667766666677888889999888875 211 222334444444555555544
No 171
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.95 E-value=2.6e+02 Score=32.47 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=19.8
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhh-hH
Q 000199 522 LYTVSSAKAEIEAMRLDVDEQVLRFSE-ER 550 (1872)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~e-Dl 550 (1872)
+..|...+.++.-+=..|-+.+..|.+ |+
T Consensus 93 i~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 93 IEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445666666677776777777777776 65
No 172
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.72 E-value=3.1e+02 Score=35.75 Aligned_cols=352 Identities=20% Similarity=0.217 Sum_probs=180.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhcc--chhhhccchhHHhhHHhhhhccccchhh
Q 000199 704 LLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYK--ASCIAKCNDMALQNQLLESNLQDVTCEN 781 (1872)
Q Consensus 704 ~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~~l~e~~--~~~i~kc~d~a~~nq~lea~lq~~~~en 781 (1872)
+++-...++...+.++-...+|. | +.=.+.+|++|.- .+|.+ .+--.|+=|.+.++.|+.
T Consensus 78 ~le~~~~l~~fs~~~~~~~~~l~-----------k--~lpy~~~s~eee~~~s~ct~---~L~~~N~~l~~~~~~~~~-- 139 (518)
T PF10212_consen 78 TLETAVKLKDFSEHFSSYVCFLQ-----------K--ILPYQLKSLEEECESSLCTA---ALSARNMELHSDMKRLTA-- 139 (518)
T ss_pred ccCcccchHHHHHHHHHHHHHHH-----------H--HhHHHHHHHHhhcccccchH---HHHHHhHHHHHHHHHHHH--
Confidence 35555666777777666655553 1 1224567777642 35655 344578888888888875
Q ss_pred hHHHhhhhhHHHHHHhh---------hhhhhHHHHHHHHhHHHHHHHHHhh---hhcccchhhhHHHHHHHhHhhHhh-h
Q 000199 782 RHLTQKLSEWESLMMDF---------KSFQSKYEAIAAEKTELANLLEKES---LENGNLRRETSLLQKELETVKIDF-D 848 (1872)
Q Consensus 782 ~~l~~k~~e~e~~v~e~---------~~~esky~ac~~e~~~l~~ll~ke~---l~~~~l~~e~~~~~~~~~~~k~~~-~ 848 (1872)
+++||++.=+++.-+ -+|-.-|.--++=-..|-+.+..=+ =.+-.+-.++-..-..|.+.-+=+ .
T Consensus 140 --~fek~~~yi~~la~~s~~~~~~~~~n~s~v~~~l~~~l~~l~d~~k~~sk~y~~k~~~E~~~pt~tqkl~t~~~c~~~ 217 (518)
T PF10212_consen 140 --VFEKLQTYISLLALPSTKPDGLLRANYSAVFTQLAASLHKLHDVLKDLSKHYNQKASLEHRLPTATQKLRTTNECILS 217 (518)
T ss_pred --HHHHHHHHHHHHhcccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhheeeccHHHHHH
Confidence 778888766655422 1222223323333334444443211 111112223334444555555544 6
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhhh--cccCCccc---ccccccccccc---------------cccCCHHHHHH-----
Q 000199 849 ELASVNKNLQRTINNLQNKMHDMLS--SYGESFSE---LCLHNKSADQN---------------LESKDLTSVIM----- 903 (1872)
Q Consensus 849 ~~~s~~~~lq~~~~~lq~kl~~~l~--sy~~~~~~---l~l~~~s~~~d---------------l~~~d~~~v~~----- 903 (1872)
-+.++....-.+++|+.+-|.=+-+ +|+.+-.. =|+..+++.+- .++--|...+.
T Consensus 218 sl~~l~~~~~k~a~f~~nnld~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~~~svpy~~a~~n~ril 297 (518)
T PF10212_consen 218 SLVSLTNGTGKIAAFFSNNLDFFTSSSGYGPKGATTFTNPLSAECMLQYKKRAAAYMSSLKKPCPESVPYEEALANRRIL 297 (518)
T ss_pred HHHHHHhhhHHHHHHHhcchHHhhcccccCCCcccccCCccchHHHHHHHHHHHHHHHHhcCCCCccCChHHHHhhhHHH
Confidence 6777777888888888887776665 45543221 14433332211 11112221111
Q ss_pred -----H---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHH------------HHhhHHhhhhhhh
Q 000199 904 -----R---LEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQK------------FEHDLRNMIDKQS 963 (1872)
Q Consensus 904 -----~---le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk------------~e~d~~~m~~kl~ 963 (1872)
+ |-.=-.++=+||.+|.+||+-..=|.+.+++.+.+-=--+.++... ...+..+--..-.
T Consensus 298 ~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se 377 (518)
T PF10212_consen 298 LSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSE 377 (518)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccccccccc
Confidence 1 1111245667888888888887777777766555321111111111 1111000000001
Q ss_pred ccHHHHHHHHHHHHHHhhhhccc-----hHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhh
Q 000199 964 VSNALLQKLQLRFEAVADKLKVS-----SEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRS 1038 (1872)
Q Consensus 964 ~s~~l~qklq~~~e~~~~k~k~~-----se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~t 1038 (1872)
++.. ...-....-++.+.+.+. +|.+.+..-.-.=+.+++++|=.++|..-||+.....+-.+|..-..
T Consensus 378 ~s~~-~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~----- 451 (518)
T PF10212_consen 378 ASSQ-SVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE----- 451 (518)
T ss_pred cccc-ccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1111 000011111222222222 24445544445556778888888888888888877777666543221
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhH
Q 000199 1039 KQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSD 1100 (1872)
Q Consensus 1039 K~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsd 1100 (1872)
....+++ .+..||++.++..+.|.|||.+-|..-++=.+..++
T Consensus 452 -----~aE~ek~--------------~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 452 -----SAEKEKE--------------SLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred -----HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1112222 255678999999999999999888776655444443
No 173
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.52 E-value=7.7e+02 Score=32.17 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=92.3
Q ss_pred hccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccc
Q 000199 1235 ASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSV 1314 (1872)
Q Consensus 1235 a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef 1314 (1872)
++|+.+--++|+.+++.+.= .+ ...-|+--=...+.+|..+ +.+- ..|.+.|.+|.-.-.+|+- |
T Consensus 296 ~~d~eqs~EslqpleedmaL----NE----vL~kLk~tn~kQq~~IqdL--q~sN-~yLe~kvkeLQ~k~~kQqv----f 360 (527)
T PF15066_consen 296 TPDTEQSFESLQPLEEDMAL----NE----VLQKLKHTNRKQQNRIQDL--QCSN-LYLEKKVKELQMKITKQQV----F 360 (527)
T ss_pred CCCHHhhhhccCCcHHHHHH----HH----HHHHHHhhhHHHHHHHHHh--hhcc-HHHHHHHHHHHHHhhhhhH----H
Confidence 56777777777777655431 11 1111111112222233222 1111 4667777777777666642 2
Q ss_pred chhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhH---HH
Q 000199 1315 TSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENA---RL 1391 (1872)
Q Consensus 1315 ~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNa---eL 1391 (1872)
-..=..|++=-+-||.+--|||..|.-.+.+++-|..=|.-+.||+.|--....-..-++...+++=..+-+|=- +.
T Consensus 361 vDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq 440 (527)
T PF15066_consen 361 VDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ 440 (527)
T ss_pred HHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 223334444446667788899999999999999999888888888877544433333344333333222211100 01
Q ss_pred HHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhh
Q 000199 1392 LTSLDTLRSELDSAIAENRVLFHENNSLIAQSE 1424 (1872)
Q Consensus 1392 l~~I~eLesELeasiaekR~L~nand~~~AElE 1424 (1872)
-.+--+.=.|++.++++|-+=+.+--..+-|+|
T Consensus 441 KnksvsqclEmdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 441 KNKSVSQCLEMDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 112223345566666666555555555555554
No 174
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.04 E-value=6.4e+02 Score=30.79 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccc
Q 000199 1096 SAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGER 1172 (1872)
Q Consensus 1096 ~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~ 1172 (1872)
..+.+..+.++.-..-+..+.....++ +..+.-+..........+..-+..++.-..-.+..+..|++|-.+|+.--
T Consensus 8 ~~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 8 RQLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQN 87 (309)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -------------------cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH-------------hhhHHHH
Q 000199 1173 -------------------SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL-------------TSENQAL 1220 (1872)
Q Consensus 1173 -------------------~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L-------------~~en~a~ 1220 (1872)
...+.||..-.||+..|+.+-..-.....+|..|-..+..| +-.+-++
T Consensus 88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keL 167 (309)
T PF09728_consen 88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKEL 167 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHhHhHHHhhhhhccccchHHHHHHHHH-------HHhhhhhhhHhhhhHHHHhhhchhhhhhhh----hcccccchH
Q 000199 1221 MVSLQEYAEESSRLASEGNTSKETLQSLRD-------ELQSERSLRDELKNVVTDLTSQLNEKHCQL----LDLDQQKSE 1289 (1872)
Q Consensus 1221 mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~e-------El~~erslreeLE~~V~~L~skLdEk~~qL----~~~d~~~~E 1289 (1872)
-+.|.+-+=. +..-....-.+-..-+.+ .+....-.--+|...+..-..+-++-+-.| ..|+..+.|
T Consensus 168 E~Ql~~AKl~--q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~E 245 (309)
T PF09728_consen 168 EVQLAEAKLE--QQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKE 245 (309)
T ss_pred HHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 000199 1290 LVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELH 1364 (1872)
Q Consensus 1290 L~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq 1364 (1872)
+...-+.+..||+++.....+.+ ..-++=+.++..++.+...+.-+.-|+.-.-+.---||
T Consensus 246 mekm~Kk~kklEKE~~~~k~k~e--------------~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 246 MEKMSKKIKKLEKENQTWKSKWE--------------KSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 175
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.02 E-value=50 Score=35.24 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCC--hHHHhhhhccCCCChhhhhhhhhhh
Q 000199 330 GMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTS--WEAVKQGTEITMSTPNLVTCDRSKV 407 (1872)
Q Consensus 330 elELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~--~eelkqel~~~~s~~eli~~El~~~ 407 (1872)
+.|+++|+.+|..=.+....+..||..|-.+.|.++....++..++.-+.+-+ .+.+-+=+|--.-.++.+++|+..|
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554444444433221111 1222223332223355555666555
Q ss_pred hhh
Q 000199 408 NEI 410 (1872)
Q Consensus 408 ~e~ 410 (1872)
+++
T Consensus 109 K~m 111 (120)
T PF12325_consen 109 KEM 111 (120)
T ss_pred HHH
Confidence 553
No 176
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=45.79 E-value=28 Score=34.66 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=19.8
Q ss_pred hhhhhhhhh--cCCCcccccceeecchhhcc
Q 000199 84 EKLYKFVVA--MGSSRSSILGEATINLADYA 112 (1872)
Q Consensus 84 ekiYkfVVs--~GSsksgiLGEasinlAdY~ 112 (1872)
.+...|.|- .+.++..++|++.|+++++.
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 334444442 23457889999999999984
No 177
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.49 E-value=4.2e+02 Score=31.23 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 474 ESKAERESLAKKMDQMECYYEALIQELEENQ 504 (1872)
Q Consensus 474 ~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q 504 (1872)
..-+++.+|+.+|.||.-.+..-.++|.+++
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e 32 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESE 32 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888877766644
No 178
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=1e+03 Score=32.94 Aligned_cols=257 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHH
Q 000199 1114 DFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQ 1193 (1872)
Q Consensus 1114 sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~ 1193 (1872)
.++--++.|+.+++-.-|+-....-+=--.++ ......+++...+|++ +++-+=..-.
T Consensus 328 ELerRRq~leeqqqreree~eqkEreE~ekke-------------------rerqEqErk~qlElek---qLerQReiE~ 385 (1118)
T KOG1029|consen 328 ELERRRQALEEQQQREREEVEQKEREEEEKKE-------------------RERQEQERKAQLELEK---QLERQREIER 385 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HhhhhhhhhhhHHHHHHHHH---------hhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhh
Q 000199 1194 QQLIDFDQQNSEMIQKIAEL---------TSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKN 1264 (1872)
Q Consensus 1194 ~~e~e~~~enSeL~~~~~~L---------~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~ 1264 (1872)
.+|.+--.+.-+.++.+..| ...-++|.+.-+.-.++ +-.|++-+..++-|+..+---.-.|..
T Consensus 386 qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~-------iv~~nak~~ql~~eletLn~k~qqls~ 458 (1118)
T KOG1029|consen 386 QREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEW-------IVYLNAKKKQLQQELETLNFKLQQLSG 458 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhhhchhhhhhhh----hcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHH
Q 000199 1265 VVTDLTSQLNEKHCQL----LDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRT 1340 (1872)
Q Consensus 1265 ~V~~L~skLdEk~~qL----~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~Ke 1340 (1872)
++.|..-.+.-..+.| ...|..-+|..+|+.++.++...+-...-+.- -|--+|+.+....--++-|
T Consensus 459 kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq---~l~~qlkq~q~a~~~~~~~------ 529 (1118)
T KOG1029|consen 459 KLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQ---ELNHQLKQKQSAHKETTQR------ 529 (1118)
T ss_pred hhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHhhhhccCcchH------
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhh-hhhhh
Q 000199 1341 QYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH-ENNSL 1419 (1872)
Q Consensus 1341 QYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~n-and~~ 1419 (1872)
+-+|..-..|-+.+-.-+.|..++|..-..+=-..|+.+. ..+.+|+.++.+-+-.+|.+.. .||.+
T Consensus 530 ---------~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n---~qlkelk~~~~~q~lake~~yk~e~d~~ 597 (1118)
T KOG1029|consen 530 ---------KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFN---NQLKELKEDVNSQQLAKEELYKNERDKL 597 (1118)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 000199 1420 I 1420 (1872)
Q Consensus 1420 ~ 1420 (1872)
+
T Consensus 598 k 598 (1118)
T KOG1029|consen 598 K 598 (1118)
T ss_pred H
No 179
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.73 E-value=5.7e+02 Score=29.87 Aligned_cols=122 Identities=11% Similarity=0.211 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhh
Q 000199 1061 EESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSL 1140 (1872)
Q Consensus 1061 ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~L 1140 (1872)
...-++-+.++.+...|++...-...-+...+.++..+..|..+.+.++....--... -.+....++.-...+.+|
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~----~~~l~~~t~~t~~~a~~L 92 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRK----AQQLNNNTERTLQRAQDL 92 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777777777777666555544211111 122222222222222222
Q ss_pred hhhhHHHHHHHHHHHhHhhhhhhhhhhhhcccc-----chHHHHhhhhhhHHHHHHHHHhh
Q 000199 1141 QNKSEEAAKLAVELDSVRNSLQSVHDELHGERS-----LSDELKSRAIDISSQLNEKQQQL 1196 (1872)
Q Consensus 1141 ls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~-----~~e~LQsk~~Dves~Ln~~~~~e 1196 (1872)
.. ....+...|.++..++..+-. ....|+..-.+++.+|..-..+-
T Consensus 93 ~~----------~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 93 EQ----------FIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 122244445555555554443 67888888899999998876664
No 180
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.62 E-value=3.4e+02 Score=34.67 Aligned_cols=241 Identities=18% Similarity=0.113 Sum_probs=0.0
Q ss_pred CccccCCCCCccccccCCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHH
Q 000199 256 SLQQEKGDPSDQRFSAQGTNDWVPGWGLDYSADNDLAIAHEENNRLRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQN 335 (1872)
Q Consensus 256 S~~~~~~~~~~~~~~~q~S~eWs~g~s~d~Std~Sl~nS~Eenn~~R~~Le~AEdsIEkLKsE~~sL~Rqad~selELQt 335 (1872)
+|.........-|...-|-.+.+-++-.+++.++-...| -..-|.|-.-+.||..+-.++..|++|
T Consensus 3 ~~~~~~~~~~~~~~~as~~meSscss~ss~~GG~~~p~s--------------P~~~e~l~~rv~slsq~Nkvlk~elet 68 (552)
T KOG2129|consen 3 HPKRPTPKNEALHIDASGRMESSCSSHSSHSGGGHEPFS--------------PSPGESLGARVSSLSQRNKVLKGELET 68 (552)
T ss_pred CCCCCCCCcccccccccccccCCcccccCCCCCCCCCCC--------------CCCHHHHHHHHHHHHhhhhhhhhhHHh
Q ss_pred HHHHHHH-----------------------Hhhc----------------------------hhhHHHHHHhhHHHHhhH
Q 000199 336 FAQKLAA-----------------------EIAS----------------------------GEQLAEEVSALKSECSHL 364 (1872)
Q Consensus 336 LRKQivK-----------------------Eskr----------------------------gqdLsrEVs~LK~ERD~L 364 (1872)
|.--+.. |+-+ -.+|++-+--|+.|-=.|
T Consensus 69 ~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~l 148 (552)
T KOG2129|consen 69 LKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPL 148 (552)
T ss_pred hhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccH
Q ss_pred HHHHHHHHhhhhcCCCCChHHHhhhhccCCCChhhhhhhh-------hhhhhhhhccccccccccccCCccccccCCccc
Q 000199 365 KSDLERLIKLRSCHPFTSWEAVKQGTEITMSTPNLVTCDR-------SKVNEIGEISLNKYEQYLSGTGLETELYQPDLD 437 (1872)
Q Consensus 365 K~EcEqLKs~kk~~~~a~~eelkqel~~~~s~~eli~~El-------~~~~e~ke~~l~~~~~~~~~s~sd~d~~q~dL~ 437 (1872)
.+=.|+-+-|.-...-.++..+.-+..+.-.+++-++.|. +.++|---|++.+ .++.-+.|.+..|+.||
T Consensus 149 Eq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwK---rmdkLe~ekr~Lq~KlD 225 (552)
T KOG2129|consen 149 EQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWK---RMDKLEQEKRYLQKKLD 225 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Q ss_pred -cccccCCCcccccccCC-CCcchhhhhHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000199 438 -MLHCVGIPALASHEHSS-VNPADSVGGKIFELLRELDESKAE----RESLAKKMDQMECYYEALIQELEENQRHMLGEL 511 (1872)
Q Consensus 438 -~L~~l~~~~lvske~~~-a~et~~Le~KI~eL~~EIE~yk~d----rEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~El 511 (1872)
..-.-..|.++++-|+- ++++-.+.--|--|-.||+-||++ --+-.++|-|+...--....++++.|+-.++|+
T Consensus 226 qpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 226 QPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred CcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 000199 512 QN 513 (1872)
Q Consensus 512 qn 513 (1872)
++
T Consensus 306 er 307 (552)
T KOG2129|consen 306 ER 307 (552)
T ss_pred HH
No 181
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=44.60 E-value=25 Score=36.00 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred hhhhhhhhhc--CCCcccccceeecchhhcccc-cCCeeeeecCCCCCCCCeEEEEeeeec
Q 000199 84 EKLYKFVVAM--GSSRSSILGEATINLADYADA-SKPSTVLLPLHGGDSGTILHVTVQLLT 141 (1872)
Q Consensus 84 ekiYkfVVs~--GSsksgiLGEasinlAdY~~a-~kp~~VSLPLk~cnsGtvLHVtIQ~l~ 141 (1872)
.+...|.|-- ..++..++|.+.|.++++... .......+||. +.|. +||.|++-+
T Consensus 73 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~-l~l~~~~~~ 130 (132)
T cd04014 73 GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGK-LHVKIELKG 130 (132)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcE-EEEEEEEec
Confidence 3455555521 224678999999999999885 56678999998 3455 499887654
No 182
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.38 E-value=2.3e+02 Score=37.05 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=100.1
Q ss_pred chhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000199 458 ADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1872)
Q Consensus 458 t~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1872)
+..|+.+|-+..++|-.++.+|+.+++--+-|+--||..+..-| -..+-++.|+.=+.+++......|-.-.+==+
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe----~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq 665 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQE----DLMNRMKKLLHSFHSELPVLSDAERDFKKELQ 665 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999987664311 11145777887778888777777766655558
Q ss_pred HHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 000199 538 DVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARL-NYSIAVNQLQKDLELLSSQVL 597 (1872)
Q Consensus 538 el~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRw-nnA~aaerLQeefk~LS~Qm~ 597 (1872)
-+++|.+-+...+++++.-+.-|-+---+.-+||.|--. .-+.---.+|.=+..|+-...
T Consensus 666 ~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~ 726 (741)
T KOG4460|consen 666 LIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIR 726 (741)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988887766666666677788876433 223344567777776665443
No 183
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.35 E-value=3.4e+02 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=24.1
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000199 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALI 497 (1872)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~Lk 497 (1872)
+....++.+..+..|++...+.-.++......+..+|..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555566666666666666666666666666555555555
No 184
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=44.25 E-value=47 Score=34.07 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=26.3
Q ss_pred hhhhhhhhhh-hcC-CCcccccceeecchhhcccccCCeeeeecC
Q 000199 82 YDEKLYKFVV-AMG-SSRSSILGEATINLADYADASKPSTVLLPL 124 (1872)
Q Consensus 82 ~~ekiYkfVV-s~G-SsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1872)
++.....|-| ..| .++..+||++.|+|+++--. .+.+.-.||
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~-~~~~~W~~L 124 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS-NTQPTWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC-CCCcceEEC
Confidence 4444444544 222 35788999999999998543 444444454
No 185
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=43.40 E-value=48 Score=34.84 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=59.1
Q ss_pred eeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh--hcCCCccc
Q 000199 22 FHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV--AMGSSRSS 99 (1872)
Q Consensus 22 FhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV--s~GSsksg 99 (1872)
..|..+|...+....=.+|.+-.|..+.||. ..-.+-+..|...+.=.+ .++.. ....|-| .-..++..
T Consensus 22 i~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~-vi~~t~nP~Wne~f~f~v---~~~~~-----~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 22 VEGRDLKPCNSNGKSDPYCEVSMGSQEHKTK-VVSDTLNPKWNSSMQFFV---KDLEQ-----DVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEeeCCCCCCCCCCcCcEEEEEECCEeeecc-ccCCCCCCccCceEEEEe---cCccC-----CEEEEEEEECCCCCCCC
Confidence 5577777654433322222233455555443 222345566766543222 23221 2223333 11224668
Q ss_pred ccceeecchhhccc----ccCCeeeeecCCCCCCCCeEEEEe
Q 000199 100 ILGEATINLADYAD----ASKPSTVLLPLHGGDSGTILHVTV 137 (1872)
Q Consensus 100 iLGEasinlAdY~~----a~kp~~VSLPLk~cnsGtvLHVtI 137 (1872)
+||.+.|++.+... ...|++--+||++-+.| -+||+|
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g-~i~l~~ 133 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEVPTG-EVVVKL 133 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccccce-eEEEEE
Confidence 99999999999986 34566677899888888 566665
No 186
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=43.06 E-value=52 Score=36.11 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=44.4
Q ss_pred hhhhhhhh-hcCC--CcccccceeecchhhcccccCCeeeeecCC--CCCCCCeEEEEeeeecCCCC
Q 000199 84 EKLYKFVV-AMGS--SRSSILGEATINLADYADASKPSTVLLPLH--GGDSGTILHVTVQLLTSKTG 145 (1872)
Q Consensus 84 ekiYkfVV-s~GS--sksgiLGEasinlAdY~~a~kp~~VSLPLk--~cnsGtvLHVtIQ~l~~~~~ 145 (1872)
.+-.+|-| .-|. .+..++|+|.|+|+.+..... ..-++||. +-..|+-|||.|..-.|-+|
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~ 142 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRLREPLTG 142 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEecCCCcc
Confidence 44455555 4432 478999999999999877554 55688885 33489999999998877553
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.98 E-value=97 Score=35.66 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=14.5
Q ss_pred HhhhhhccccchhHHHHHHHHhhhccHH
Q 000199 993 NAQRHTDLFSDLDYLEVELQQLSSKNRD 1020 (1872)
Q Consensus 993 y~~~~~~l~s~l~~~e~elq~l~s~n~~ 1020 (1872)
|-+..+-+-.++..++.|++.+..+-..
T Consensus 84 ~Ls~~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 84 QLSTTPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666665544333
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.80 E-value=4.4e+02 Score=35.35 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhc
Q 000199 1289 ELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNV 1368 (1872)
Q Consensus 1289 EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~q 1368 (1872)
.+..++-.+..|+...+-+..+ +..|+..|.+++..+....-.+-....-|+..+.+...+......--..+..++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~- 296 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK- 296 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555566666665554444 667888888887777665555555555566666666666444444444444444
Q ss_pred cHHHHHhHhhhhhhHHHH
Q 000199 1369 DVETVLNSCLAREAQCNE 1386 (1872)
Q Consensus 1369 Daedeln~~lksEa~~~k 1386 (1872)
++.+.++.+.|+....+
T Consensus 297 -~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 297 -KEKEERRKLHNEILELK 313 (670)
T ss_pred -HHHHHHHHHHHHHHHhh
Confidence 55555555555544333
No 189
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.78 E-value=7.2e+02 Score=30.49 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhh--------hHHhHHHHHH
Q 000199 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLY--------TVSSAKAEIE 533 (1872)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~--------tIs~Leaqve 533 (1872)
+.=+-.|...++..+.|...|..+++.+--.|..|+.+....+. +...++++..|..+|=. .|..+..+++
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~-e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~ 221 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE-ELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM 221 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 33344566777777888888888777777666666664333221 11112222233322211 1233333333
Q ss_pred HH---HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000199 534 AM---RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQ 595 (1872)
Q Consensus 534 ~L---eeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeefk~LS~Q 595 (1872)
.+ -.+++.|......++++.+..+.+....=-.||--+...|-=...=+.+|+..|+.|..+
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 22 345566677777778888888888776655666666666766677788999999888654
No 190
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=42.57 E-value=1.2e+03 Score=33.12 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCccccccc-----ccccccccccCCHHHHHHHHHHHH
Q 000199 857 LQRTINNLQNKMHDMLSSYGESFSELCLH-----NKSADQNLESKDLTSVIMRLEVLQ 909 (1872)
Q Consensus 857 lq~~~~~lq~kl~~~l~sy~~~~~~l~l~-----~~s~~~dl~~~d~~~v~~~le~~q 909 (1872)
.-.+|+.=.+-|..+|.+|+..+.+=..| +.+..+.+.++|.-.+.|.=-.|+
T Consensus 153 ~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~ 210 (1074)
T KOG0250|consen 153 NGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLE 210 (1074)
T ss_pred cCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHH
Confidence 33566677778888999999988883332 567778888898888877544443
No 191
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=42.20 E-value=33 Score=34.49 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=34.6
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCCCCCC---CCeEEEEeee
Q 000199 94 GSSRSSILGEATINLADYADASKPSTVLLPLHGGDS---GTILHVTVQL 139 (1872)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cns---GtvLHVtIQ~ 139 (1872)
..++..++|.+.|++++... ..+..+.+||.+.+. .+.|||.+.+
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 72 RGLTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred CCCCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 33578899999999998875 678889999965443 4677887754
No 192
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=42.10 E-value=17 Score=37.88 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=45.5
Q ss_pred EEEeecCCC-ccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhhh--cCCCcccccceeecchhhccc
Q 000199 37 ISFIPADSG-KAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVA--MGSSRSSILGEATINLADYAD 113 (1872)
Q Consensus 37 vSiVp~D~G-K~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs--~GSsksgiLGEasinlAdY~~ 113 (1872)
|+++|.... +... |..|..++ .+|+|.-+= .=+....+..++...|-|- .+.++..+||++.|.|+++-.
T Consensus 41 v~Llp~~~~~~~~~---kT~v~~~t---~nPvfnE~F-~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 41 VALLPCSSSTSCLF---RTKALEDQ---DKPVFNEVF-RVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred EEEccCCCCCCceE---EcCccCCC---CCCccccEE-EEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 556786643 2233 34466555 577775442 2245566677777777663 355688899999999999844
Q ss_pred cc
Q 000199 114 AS 115 (1872)
Q Consensus 114 a~ 115 (1872)
..
T Consensus 114 ~~ 115 (124)
T cd08680 114 SE 115 (124)
T ss_pred CC
Confidence 33
No 193
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=42.06 E-value=7.2e+02 Score=30.26 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=70.8
Q ss_pred HHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHH
Q 000199 1073 FKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLA 1151 (1872)
Q Consensus 1073 lK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~a 1151 (1872)
+|+.|+-..+|+.---..+..++. .|-+||+..+...-++.-.||+| ++....+....-.++. ++
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q-----------~y 90 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ-----------FY 90 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 566776666666554444444433 45567777777777777888888 6666666555544332 22
Q ss_pred HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000199 1152 VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE 1212 (1872)
Q Consensus 1152 ~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~ 1212 (1872)
--..+++.-+--+|.....++++--+|--.|+|++.. ..++.--.-+....|++.|+.
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra---kRati~sleDfeqrLnqAIEr 148 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA---KRATIYSLEDFEQRLNQAIER 148 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh---hhhhhhhHHHHHHHHHHHHHH
Confidence 2234456666666666666666666666666666643 333333333444455555443
No 194
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=41.91 E-value=20 Score=36.77 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=37.7
Q ss_pred EEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh-h--cCCCcccccceeecchhhccc
Q 000199 37 ISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-A--MGSSRSSILGEATINLADYAD 113 (1872)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s--~GSsksgiLGEasinlAdY~~ 113 (1872)
|.+.|....... .|+.|..+++ +|+|.-+=.. +.....+..+|- |.| . .++.++.+||++.|.++++..
T Consensus 38 v~l~p~~~~~~~---~kT~v~~~t~---~P~~nE~F~f-~v~~~~~~~~l~-v~V~~~~~~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 38 ISLSPDKEVRFR---QKTSTVPDSA---NPLFHETFSF-DVNERDYQKRLL-VTVWNKLSKSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred EEEEeCCCCcce---EeCccccCCC---CCccccEEEE-EcChHHhCCEEE-EEEECCCCCcCCCEEEEEEEecHHHhcc
Confidence 445665433222 2444555555 6666432211 222233444443 555 2 244568899999999999973
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.48 E-value=1.8e+02 Score=32.57 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRH---MLGELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q---~~~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1872)
+.+.+++.++..++...++.-......+..++-....|..++.+..-. ...-++.++.||.+.-...+.++.....|
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555443321111 11236667788888888888888888888
Q ss_pred HHHHHHHHHHHh
Q 000199 536 RLDVDEQVLRFS 547 (1872)
Q Consensus 536 eeel~~Q~~rF~ 547 (1872)
+.|=.+=+.|+-
T Consensus 171 ~~En~~Lv~Rwm 182 (194)
T PF08614_consen 171 EEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777666664
No 196
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.29 E-value=78 Score=40.41 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhh----hhhhhhHHHHHHHHHhhhccHHHH
Q 000199 1388 NARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYG----EHKSQLALEVERMKQLLVGSEEEI 1462 (1872)
Q Consensus 1388 NaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~----Eek~k~a~Eve~lK~LL~~~eeei 1462 (1872)
-+.|-..+.+++.+++.++.+|+.|...|+.++.....-.+++...+..+. .++.+.+.++.++..+|..+..+.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999988877766666766665533 333444444444444444444333
No 197
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.08 E-value=7.1e+02 Score=32.45 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=55.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhh
Q 000199 917 RQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKL 983 (1872)
Q Consensus 917 l~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~ 983 (1872)
-.+.++...+.++...++......+.++..+...++..-...-+|+..=...-++|..+|+.+|+++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666667777777777888888889999999999999999988888899999999999984
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.83 E-value=1.3e+02 Score=36.34 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHH
Q 000199 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELL 1085 (1872)
Q Consensus 1043 ~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~ 1085 (1872)
..|..|..++..-|..-..+...+..|+..|+.-..-+..+..
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333333
No 199
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.64 E-value=68 Score=31.36 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=39.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhH
Q 000199 1033 EEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLH 1081 (1872)
Q Consensus 1033 ~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLh 1081 (1872)
............|..|+-..+.+|+++-++..++-.|++.|++-+++.+
T Consensus 19 rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 19 RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334455678889999999999999999999999999999977664
No 200
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.57 E-value=2.8e+02 Score=36.14 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=56.9
Q ss_pred HHhHHHhhHhhHHHHHHHHHhh-----------hhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHH
Q 000199 1070 VDSFKQSFQSLHDELLVERSLR-----------DDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMV 1138 (1872)
Q Consensus 1070 l~slK~s~qSLhdEl~aersl~-----------edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~ 1138 (1872)
++.|.+-|-++..|+.++|+-- +...+.+++..-+|.....+..+...+.+..-.......|+...+++
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777643 44445556666666666666655555555555555555666666666
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhhh
Q 000199 1139 SLQNKSEEAAKLAVELDSVRNSLQ 1162 (1872)
Q Consensus 1139 ~Lls~sEe~~k~a~t~~q~e~~lq 1162 (1872)
.|-++..+++..+.+.+-+..+|+
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555544444443
No 201
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=40.31 E-value=43 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.1
Q ss_pred hcCCCcccccceeecchhhcccc
Q 000199 92 AMGSSRSSILGEATINLADYADA 114 (1872)
Q Consensus 92 s~GSsksgiLGEasinlAdY~~a 114 (1872)
..+..+..++|++.|.+++....
T Consensus 92 d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 92 DEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EcCCcCCeeEEEEEEEcccCCCC
Confidence 33333778999999999987653
No 202
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=40.25 E-value=2.8e+02 Score=29.74 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=64.6
Q ss_pred HHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhh-HHhhhhhhhhh
Q 000199 1363 LHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRA-ETMADNYGEHK 1441 (1872)
Q Consensus 1363 lq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~-E~~l~~~~Eek 1441 (1872)
++.++--....++.-+.+=-..++++..|...+..|+.+..++....++|--.++.+...++.+|.-- +-..+-...++
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555566666668899999999999999999999999999999999999999777533 55555555566
Q ss_pred hhhHHHHHHH
Q 000199 1442 SQLALEVERM 1451 (1872)
Q Consensus 1442 ~k~a~Eve~l 1451 (1872)
-+-.+|+..+
T Consensus 94 dka~lel~l~ 103 (107)
T PF09304_consen 94 DKAILELKLA 103 (107)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 6666666543
No 203
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.17 E-value=8e+02 Score=30.26 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhh
Q 000199 1342 YEAWVEELVQQVYSTDRLLTELHTKN 1367 (1872)
Q Consensus 1342 YEtkvqEL~qQL~~Skk~~eElq~K~ 1367 (1872)
++..+.+++++|..+..-+..+..++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555554
No 204
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=40.16 E-value=3.1e+02 Score=36.50 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhh---hhccccchhhHHH
Q 000199 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRAS---EESSSVTSLQSEL 1321 (1872)
Q Consensus 1245 L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~---~ktsef~~Ls~hL 1321 (1872)
|.+-++-|+.+-..+-.||..-.||-+.+.++...+ ..||.+.-++- ..++ +|=-|+
T Consensus 155 LnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl-----------------talEkeq~e~E~K~R~se---~l~qev 214 (861)
T KOG1899|consen 155 LNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL-----------------TALEKEQNETEKKLRLSE---NLMQEV 214 (861)
T ss_pred hchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH-----------------HHHHHHhhhHHHHHHhHH---HHHHHH
Confidence 666677778888888888888888877666654444 44443333221 2333 333333
Q ss_pred HHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHH----HhHhhhhhhHHHHHhHHHHHhHH
Q 000199 1322 SEMH-ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETV----LNSCLAREAQCNEENARLLTSLD 1396 (1872)
Q Consensus 1322 sElk-e~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaede----ln~~lksEa~~~keNaeLl~~I~ 1396 (1872)
...+ .- +.-.+-|||+++---+.-+...+.|.. .|+-|+... ..+.++.=-.+..+.++|-..+.
T Consensus 215 n~~kv~e-------~~~erlqye~klkstk~e~a~L~Eq~~---eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~e 284 (861)
T KOG1899|consen 215 NQSKVGE-------VVQERLQYETKLKSTKGEMAPLREQRS---EKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALE 284 (861)
T ss_pred HHHHHHH-------HHHHHHHHHhhcccccchhhhHHHHHh---hhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 3111 11 123566888875332222222222211 122222221 22222222334555556666665
Q ss_pred HHH---HHHHHHHHHhHHhhhhhhhh
Q 000199 1397 TLR---SELDSAIAENRVLFHENNSL 1419 (1872)
Q Consensus 1397 eLe---sELeasiaekR~L~nand~~ 1419 (1872)
++- .+-++-|++.|...|.||.+
T Consensus 285 slm~ane~kdr~ie~lr~~ln~y~k~ 310 (861)
T KOG1899|consen 285 SLMRANEQKDRFIESLRNYLNNYDKN 310 (861)
T ss_pred HHHhhchhhhhHHHHHHHHhhhhhhh
Confidence 543 34456677778888888754
No 205
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=39.92 E-value=5.2e+02 Score=34.67 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=76.8
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHH-HHhh
Q 000199 1176 DELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRD-ELQS 1254 (1872)
Q Consensus 1176 e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~e-El~~ 1254 (1872)
+.--.|..|++..+.++..+.----+.--.=..++-+|...+-++|+++ -.||=-|+.++. +.+.
T Consensus 135 eaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev--------------SeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 135 EAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV--------------SELKLKLTALEKEQNET 200 (861)
T ss_pred HHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH--------------HHhHHHHHHHHHHhhhH
Confidence 3334566677776666655432211111111122233444444555544 445555666653 3344
Q ss_pred hhhhh---Hhh----hhHHHHhhhchhhhhhhh-hcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHh
Q 000199 1255 ERSLR---DEL----KNVVTDLTSQLNEKHCQL-LDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHE 1326 (1872)
Q Consensus 1255 erslr---eeL----E~~V~~L~skLdEk~~qL-~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke 1326 (1872)
+.-+| +.+ .++|..+ +-.+.|- +.+.-.++|+..|+.|+++-..+--+++ +-+-.
T Consensus 201 E~K~R~se~l~qevn~~kv~e~----~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~-------------~~lv~ 263 (861)
T KOG1899|consen 201 EKKLRLSENLMQEVNQSKVGEV----VQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLL-------------RTLVQ 263 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHH-------------HHHHH
Confidence 43333 222 2333332 2223333 5567789999999999887655544443 22223
Q ss_pred hhhhhhH--------------HHHHHHHHHHHHHHHHHHHHhhchh
Q 000199 1327 LLLAVDV--------------RLIFTRTQYEAWVEELVQQVYSTDR 1358 (1872)
Q Consensus 1327 ~l~A~dv--------------riiF~KeQYEtkvqEL~qQL~~Skk 1358 (1872)
.++|+.+ .++-..+|-+..+++|++=|.--+|
T Consensus 264 ~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k 309 (861)
T KOG1899|consen 264 RLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDK 309 (861)
T ss_pred HHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhh
Confidence 3444333 3444567777778888776655443
No 206
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=39.75 E-value=24 Score=35.45 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCcccCCcccchhhhhccccchhchhhhhhhhhh-hcCC-CcccccceeecchhhcccccCC----eeeeecCCCC--CC
Q 000199 58 NGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AMGS-SRSSILGEATINLADYADASKP----STVLLPLHGG--DS 129 (1872)
Q Consensus 58 ~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~GS-sksgiLGEasinlAdY~~a~kp----~~VSLPLk~c--ns 129 (1872)
+.+..|...++=.+.-.. -+. ......|.| .-+. .+..+||++.|.++++...... ...+.||.+- ..
T Consensus 44 ~~~P~Wne~f~f~v~~~~---~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 44 GTNPTWNETLRFPLDERL---LQQ-GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred CCCCCCCCEEEEEcChHh---ccc-CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 357788876654433211 000 112233333 4443 5778999999999999986653 4678888643 24
Q ss_pred CCeEE
Q 000199 130 GTILH 134 (1872)
Q Consensus 130 GtvLH 134 (1872)
+.+||
T Consensus 120 ~G~~~ 124 (125)
T cd04051 120 QGVLN 124 (125)
T ss_pred CeEEe
Confidence 55555
No 207
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.32 E-value=4.4e+02 Score=29.50 Aligned_cols=108 Identities=19% Similarity=0.356 Sum_probs=56.6
Q ss_pred HHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHhhh---cccCCcccccccccccccccccCCHHHHHHHHHHHHHHHH
Q 000199 837 QKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLS---SYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNAC 913 (1872)
Q Consensus 837 ~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~---sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c 913 (1872)
-+.|..++..++.+..--..+...+..|....+++.. -|...++.|.-.+.+ .++...+.++-......+
T Consensus 23 D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-------~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-------KSLSEALSQLAEAFEKIS 95 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------chhHHHHHHHHHHHHHHH
Confidence 4567888888888777777777777666666666555 444455554333332 334444444433222221
Q ss_pred H------------------HHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHH
Q 000199 914 Q------------------KIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKF 951 (1872)
Q Consensus 914 ~------------------kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~ 951 (1872)
. ..++.+.--+.+.+-|+.+...+..+..++...|..+
T Consensus 96 ~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~ 151 (236)
T PF09325_consen 96 ELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQL 151 (236)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222233334444555555555556666655555444
No 208
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.57 E-value=8.6e+02 Score=30.15 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=56.4
Q ss_pred hhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccch
Q 000199 1162 QSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTS 1241 (1872)
Q Consensus 1162 qeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~L 1241 (1872)
.+|.++|---......-|.-...+.+.+...+.+..+|+-+|-+|..-+......+..+-++|.|.++.-+-+
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~------- 288 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC------- 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3333333333333333344445566667777778888888888888888888777777878887777552222
Q ss_pred HHHHHHHHHHHhhhhh
Q 000199 1242 KETLQSLRDELQSERS 1257 (1872)
Q Consensus 1242 k~~L~Sl~eEl~~ers 1257 (1872)
-..|....+|+.++|+
T Consensus 289 ~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 289 MAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 2456667777777764
No 209
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.55 E-value=2.7e+02 Score=33.96 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=38.6
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 452 HSSVNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQE 499 (1872)
Q Consensus 452 ~~~a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQe 499 (1872)
-.++-++.+| +||-+|-.-+|..|+||--=-.|||-|+-...--||+
T Consensus 8 WKeGL~~~aL-qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK 54 (307)
T PF10481_consen 8 WKEGLPTRAL-QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQK 54 (307)
T ss_pred HhccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445556666 6999999999999999999999999998887777774
No 210
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.20 E-value=9.2e+02 Score=30.36 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhh
Q 000199 1038 SKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSL 1080 (1872)
Q Consensus 1038 tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSL 1080 (1872)
...-+.++..+-..+.....|+......+-.+++.+++.+...
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 3344566666666666677777777777777777777665443
No 211
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=38.01 E-value=74 Score=34.54 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=45.6
Q ss_pred eeeccccccc----ccc-eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhhh--cC
Q 000199 22 FHATHIQQTG----WDK-LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVA--MG 94 (1872)
Q Consensus 22 FhAtqVp~~g----wd~-L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs--~G 94 (1872)
..|..+|... .|. ..|++.|...|....||. ..-++-+..|...+ .........+.+....|.|- -.
T Consensus 34 i~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~-vi~~t~nP~WnE~f-----~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 34 KEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTP-VVKKSVNPVWNHTF-----VYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred EeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCC-ccCCCCCCCCCCEE-----EEecCCHHHhCCCEEEEEEEeCCC
Confidence 5566676543 222 223456777777666653 22233344444332 22211112334445556551 12
Q ss_pred CCcccccceeecchhhccc
Q 000199 95 SSRSSILGEATINLADYAD 113 (1872)
Q Consensus 95 SsksgiLGEasinlAdY~~ 113 (1872)
.++..+||++.|++++...
T Consensus 108 ~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCceEEEEEEeCCcccc
Confidence 3468999999999998764
No 212
>PLN03188 kinesin-12 family protein; Provisional
Probab=37.44 E-value=1.6e+03 Score=32.83 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhh
Q 000199 1145 EEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDF 1199 (1872)
Q Consensus 1145 Ee~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~ 1199 (1872)
+-|.+-|.++.|+-..+|.-.-+-.|.-.-..---.|..-++++|++-+..+.=.
T Consensus 884 ~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~ 938 (1320)
T PLN03188 884 EFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFL 938 (1320)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhh
Confidence 3444555555554444443332222222222334456777888888888776433
No 213
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=37.25 E-value=1.3e+03 Score=31.71 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHHHHhhhHhhhhhHHhhhhhhHHHH-----HHH--HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHh
Q 000199 1123 IQKTAVLTKENQDLMVSLQNKSEEAA-----KLA--VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQ 1195 (1872)
Q Consensus 1123 l~~~~~dlEea~sl~~~Lls~sEe~~-----k~a--~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~ 1195 (1872)
+-++..+++.-.+++..|-.|=.+.. .-+ .++-.|.+-++-|...-.++..-.+- ++.-|.|+=...-=+
T Consensus 206 Lsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~EL---LqVRvqSLt~IL~LQ 282 (739)
T PF07111_consen 206 LSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAEL---LQVRVQSLTDILTLQ 282 (739)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444555555555555555544333 111 22233444444444333333222222 233444444444445
Q ss_pred hhhhhhhh-----------hHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhh
Q 000199 1196 LIDFDQQN-----------SEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSER 1256 (1872)
Q Consensus 1196 e~e~~~en-----------SeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~er 1256 (1872)
|.++.+-. ..+-+++.+-..-=|++||.|..+.-+ |-+.+.+|+--..+|++++....
T Consensus 283 EeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQele---h~~~~~qL~~qVAsLQeev~sq~ 351 (739)
T PF07111_consen 283 EEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELE---HRDSVKQLRGQVASLQEEVASQQ 351 (739)
T ss_pred HHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 234456666677789999999887765 67778888888888888876654
No 214
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=36.94 E-value=39 Score=36.98 Aligned_cols=69 Identities=29% Similarity=0.345 Sum_probs=59.1
Q ss_pred hhhhccccchHHHHH----HHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHh
Q 000199 1232 SRLASEGNTSKETLQ----SLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLES 1302 (1872)
Q Consensus 1232 aq~a~e~~~Lk~~L~----Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLes 1302 (1872)
+|+..|+..||+.+. +-..|+..+.+--..+..+|+.|.+++..++..|.. .|..=|.|+|+.+.||-.
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA--dhS~lllhvk~~~~DLr~ 130 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA--DHSTLLLHVKQFPKDLRS 130 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhh
Confidence 677788888999888 788999999999999999999999999988887743 456678899999999853
No 215
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=36.85 E-value=33 Score=33.86 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=27.3
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCC
Q 000199 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGD 128 (1872)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn 128 (1872)
.++..++|++.+++++... ..+...++||....
T Consensus 73 ~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g 105 (115)
T cd04040 73 GGKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG 105 (115)
T ss_pred CCCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC
Confidence 3478899999999999765 67789999997654
No 216
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.88 E-value=7.3e+02 Score=28.57 Aligned_cols=72 Identities=32% Similarity=0.387 Sum_probs=39.2
Q ss_pred ccccchhHHHHHHHHhhhccHHHHHH-------HH-----------hhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcch
Q 000199 999 DLFSDLDYLEVELQQLSSKNRDLAQE-------IL-----------ALQVVTEEFDRSKQTISELTEENRALMVALQDKS 1060 (1872)
Q Consensus 999 ~l~s~l~~~e~elq~l~s~n~~l~~~-------i~-----------~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ 1060 (1872)
+|-+.|..+.++++.+.-+|+.|=+= |- -|....+|+.-++.-+.-..+.++++-..+.|++
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777665321 10 1344455555555555555555555555555555
Q ss_pred hHHHHHHHHH
Q 000199 1061 EESVKLALEV 1070 (1872)
Q Consensus 1061 ees~~~~~El 1070 (1872)
.+-.++-.++
T Consensus 96 ~el~k~~~~l 105 (194)
T PF15619_consen 96 EELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHH
Confidence 5444433333
No 217
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=35.50 E-value=34 Score=34.04 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=39.5
Q ss_pred cccCCcccchhhhhccccchhchhhhhhhhhh-hcCCCcccccceeecchhhcccccCCeeeeecCCCCC-CCCeEEEEe
Q 000199 60 TCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AMGSSRSSILGEATINLADYADASKPSTVLLPLHGGD-SGTILHVTV 137 (1872)
Q Consensus 60 ~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn-sGtvLHVtI 137 (1872)
+..|...+.=.+.. +. .....|-| .-...+..++|++.|++++.... ......+||.... ...-||+.+
T Consensus 46 nP~Wne~f~f~v~~---~~-----~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~G~i~l~l 116 (118)
T cd08681 46 HPEWDEELRFEITE---DK-----KPILKVAVFDDDKRKPDLIGDTEVDLSPALKE-GEFDDWYELTLKGRYAGEVYLEL 116 (118)
T ss_pred CCccCceEEEEecC---CC-----CCEEEEEEEeCCCCCCcceEEEEEecHHHhhc-CCCCCcEEeccCCcEeeEEEEEE
Confidence 67787665433332 11 12223323 22323378999999999998663 3456777885432 223566655
Q ss_pred e
Q 000199 138 Q 138 (1872)
Q Consensus 138 Q 138 (1872)
+
T Consensus 117 ~ 117 (118)
T cd08681 117 T 117 (118)
T ss_pred E
Confidence 4
No 218
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.37 E-value=3.1e+02 Score=27.29 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE 502 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1872)
+.|+.||--+..-|...+.+.++|..+=.++.-..+.|+++.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56888998888888888888888888877777666666665444
No 219
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.37 E-value=2.5e+02 Score=32.91 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=63.6
Q ss_pred HhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhh-hhhHHHHHHHHHhhhccHHHHhhhhhhhhh
Q 000199 1393 TSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHK-SQLALEVERMKQLLVGSEEEIDDLMMSREE 1471 (1872)
Q Consensus 1393 ~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek-~k~a~Eve~lK~LL~~~eeeid~l~~~k~e 1471 (1872)
..+..++..+..+|+..+.+-..|+.+.+..+.+..+.+..+..-+|.= .+..-+...+...+.+.+.++..+.-+.+-
T Consensus 38 ~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~ 117 (225)
T COG1842 38 SELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEK 117 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777888888888888888888888877777777666553 233334445555555556666655555555
Q ss_pred HHHHHHHHHHHHHhhhHHHhc
Q 000199 1472 LEIKVVVLKAKLAEQHAQVIS 1492 (1872)
Q Consensus 1472 ~ei~~~vlk~kl~e~~~~i~~ 1492 (1872)
++-.+..|..|+.+.+++..+
T Consensus 118 l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 118 LKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 220
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.27 E-value=1.2e+03 Score=30.75 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=86.7
Q ss_pred HHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHh
Q 000199 1011 LQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL 1090 (1872)
Q Consensus 1011 lq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl 1090 (1872)
...+.+.|+.|-+.|..-.. .-..+.+|.+..|++.. .+.+.-+=++.+|+--++--+-+......
T Consensus 273 i~~lk~~n~~l~e~i~ea~k-------~s~~i~~l~ek~r~l~~-------D~nk~~~~~~~mk~K~~~~~g~l~kl~~e 338 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMK-------ISQKIKTLREKWRALKS-------DSNKYENYVNAMKQKSQEWPGKLEKLKSE 338 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33456778888777764332 23355666666665532 34566666677888878877777777777
Q ss_pred hhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-Hhhhhhhhhhhhh
Q 000199 1091 RDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELH 1169 (1872)
Q Consensus 1091 ~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q-~e~~lqeL~~eL~ 1169 (1872)
-+.+++.+..|-++-|++|.++-..+---.+ ++.|...-+.--.-.-..+.+++++.+-+++..- ..+.+.+|..-++
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~Is~e~-fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQGISTEQ-FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887544321111 3333332222222223345666666666544332 3444455544444
Q ss_pred ccccchH
Q 000199 1170 GERSLSD 1176 (1872)
Q Consensus 1170 ~~~~~~e 1176 (1872)
....+..
T Consensus 418 ~~~sl~~ 424 (622)
T COG5185 418 QYDSLIQ 424 (622)
T ss_pred HHHHHHH
Confidence 4443333
No 221
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=34.83 E-value=50 Score=33.02 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.4
Q ss_pred CCCcccccceeecchhh
Q 000199 94 GSSRSSILGEATINLAD 110 (1872)
Q Consensus 94 GSsksgiLGEasinlAd 110 (1872)
+.++..++|++.|.+++
T Consensus 96 ~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 96 RDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCCcEeeEEEEeccc
Confidence 34578899999999998
No 222
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.79 E-value=5e+02 Score=31.61 Aligned_cols=41 Identities=39% Similarity=0.452 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE 502 (1872)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1872)
...+-++..|++.++.+.++|...+..|+...+.|-+++++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777665
No 223
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.70 E-value=1.1e+03 Score=30.36 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=42.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhh
Q 000199 1036 DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQL 1112 (1872)
Q Consensus 1036 ~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL 1112 (1872)
.+.+.+-.++..-++.+ ........++-.+|.+++..+.++..++..--.-...+....+++...|..+..+-
T Consensus 38 ~~l~q~q~ei~~~~~~i----~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKI----REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444445554444433 33345566777777777777777777766666556666666666666655444443
No 224
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=33.97 E-value=31 Score=35.56 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=43.1
Q ss_pred EEEeecCCCccccccccccccCC--cccCCcccchhhhhccccchhchhhhhhhhhhh-c-CCCcccccceeecchhhcc
Q 000199 37 ISFIPADSGKAIGKTTKANVRNG--TCKWADPIYETTRLLQDIKTKQYDEKLYKFVVA-M-GSSRSSILGEATINLADYA 112 (1872)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G--~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs-~-GSsksgiLGEasinlAdY~ 112 (1872)
|++.|.+......|| .|..+ +..|...+.=.|. ..++.+....|-|- . +.++..+||++.|.+++|.
T Consensus 43 v~l~p~~~~~~~~kT---~v~~~t~nP~wnE~f~f~i~------~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 43 TYLLPDKSRQSKRKT---SIKRNTTNPVYNETLKYSIS------HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred EEEEcCCccccceEe---eeeeCCCCCcccceEEEECC------HHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 456776643333344 23333 4456654421121 12233434445442 2 3457889999999999996
Q ss_pred cccCCeeeeecCC
Q 000199 113 DASKPSTVLLPLH 125 (1872)
Q Consensus 113 ~a~kp~~VSLPLk 125 (1872)
-. .....-+||.
T Consensus 114 ~~-~~~~~w~~l~ 125 (125)
T cd04029 114 FD-SQHEECLPLH 125 (125)
T ss_pred cc-CCcccEEECc
Confidence 54 4566666663
No 225
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.82 E-value=1.4e+03 Score=31.14 Aligned_cols=149 Identities=22% Similarity=0.250 Sum_probs=87.3
Q ss_pred HhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhch
Q 000199 1194 QQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1872)
Q Consensus 1194 ~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skL 1273 (1872)
..-.+.....++|.+.+.....+=-.++..+.+.---+.+.----..|++.|.++...+..+|-=+++--....++..|+
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666666554222211111228999999999999999888876666555555554
Q ss_pred hhhhhh-----------hhcc-cccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHH
Q 000199 1274 NEKHCQ-----------LLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQ 1341 (1872)
Q Consensus 1274 dEk~~q-----------L~~~-d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQ 1341 (1872)
...-.. +.++ |.+.-+|..|+..+.+|..+++.-..+--+|+ +++|.++.-=++-+.-+-++
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~------~~I~~l~~~Lg~~~~~~vt~ 207 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELK------EEIKSLCSVLGLDFSMTVTD 207 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhCCCcccchhh
Confidence 433222 2222 66778899999999999988886544433332 34454444433444434455
Q ss_pred HHHHHHH
Q 000199 1342 YEAWVEE 1348 (1872)
Q Consensus 1342 YEtkvqE 1348 (1872)
|+--+-.
T Consensus 208 ~~~sL~~ 214 (660)
T KOG4302|consen 208 VEPSLVD 214 (660)
T ss_pred hhhhhhh
Confidence 5544433
No 226
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=33.56 E-value=1.4e+03 Score=31.59 Aligned_cols=72 Identities=14% Similarity=0.314 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hHhHHHhhhHHHHH----------hhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000199 528 AKAEIEAMRLDVDEQVLRFSE---ERRDLESLNKELER----------RAVSAEAALKRARLNYSIAVNQLQKDLELLSS 594 (1872)
Q Consensus 528 Leaqve~Leeel~~Q~~rF~e---Dl~a~~~~kvEqEq----------RAI~AEeALRKtRwnnA~aaerLQeefk~LS~ 594 (1872)
++..|+.|+++.++.+.+-.. =..-++-+|+|-.. --|.|=+.--|-++--|.-+--|++.|+.|-.
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~ 726 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEA 726 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHH
Confidence 356666677766666544322 12444445554432 33555566667777777778888888888877
Q ss_pred HHHhh
Q 000199 595 QVLSM 599 (1872)
Q Consensus 595 Qm~S~ 599 (1872)
..++.
T Consensus 727 e~~~~ 731 (762)
T PLN03229 727 ELAAA 731 (762)
T ss_pred HHHHh
Confidence 76653
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=33.21 E-value=1.5e+03 Score=32.04 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhh--------ccccchhhHHH
Q 000199 1250 DELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEE--------SSSVTSLQSEL 1321 (1872)
Q Consensus 1250 eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~k--------tsef~~Ls~hL 1321 (1872)
+.++....=|+.|+.+|-+|.-+|.|-..++----+.+.-...|..++--|..+++--..- +.++..|+.+=
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (977)
T PLN02939 156 EDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEEN 235 (977)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHh
Q ss_pred HHHHhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHhhchhh-----------HHHHHhhhccHHHHHhHh
Q 000199 1322 SEMHELLLA-------------VDVRLIFTRTQYEAWVEELVQQVYSTDRL-----------LTELHTKNVDVETVLNSC 1377 (1872)
Q Consensus 1322 sElke~l~A-------------~dvriiF~KeQYEtkvqEL~qQL~~Skk~-----------~eElq~K~qDaedeln~~ 1377 (1872)
-=||+-+.+ --+.+.=.+.-.++-+.+|.-.+..+... .=+---.+|+..+..-+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 236 MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhc
Q 000199 1378 LAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVG 1457 (1872)
Q Consensus 1378 lksEa~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~ 1457 (1872)
--.=+-....|-.|..+++.|++-|+.+...+= -...-+.|...++-.+.++.+...+..-.-.-+..+|+-...-|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 316 VEKAALVLDQNQDLRDKVDKLEASLKEANVSKF-SSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHhhh-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHH
Q 000199 1458 SEEE 1461 (1872)
Q Consensus 1458 ~eee 1461 (1872)
+-+|
T Consensus 395 ~~~~ 398 (977)
T PLN02939 395 LKEE 398 (977)
T ss_pred HHhh
No 228
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.87 E-value=8.1e+02 Score=28.16 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000199 461 VGGKIFELLRELDESKAERESLAKKMDQMEC 491 (1872)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~l 491 (1872)
+..++.++..+|..-+.+++.|..++++.-.
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999998887544
No 229
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.66 E-value=1.5e+02 Score=29.83 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000199 1283 LDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYST 1356 (1872)
Q Consensus 1283 ~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~l~A~dvriiF~KeQYEtkvqEL~qQL~~S 1356 (1872)
||....|+..+|.+..|++.....|+-+-. .+...+.+|. ....=+|.+||..|.-|+.+|..-
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~---~ir~~v~eLE-------~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEMQ---QIRQKVYELE-------QAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555565555555544432222 2223333332 233457899999999999998653
No 230
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=1.8e+02 Score=32.23 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=43.7
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHH
Q 000199 1003 DLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEEN 1049 (1872)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En 1049 (1872)
.++++..++|.+.+.=+.|-+.|-.|.....|+..++.|+..+..-.
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999999999999998766
No 231
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=32.34 E-value=1.1e+02 Score=28.00 Aligned_cols=39 Identities=38% Similarity=0.743 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHH
Q 000199 1469 REELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQ 1517 (1872)
Q Consensus 1469 k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qklseq 1517 (1872)
|-++|++|+.|..+|+++ |+ .=..+..+|+.++++|-.+
T Consensus 6 kR~IElk~~elrd~LEe~--------g~--~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 6 KREIELKCLELRDELEEQ--------GY--SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH--------T----HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhC--------CC--CHHHHHHHHHHHHHHHHhc
Confidence 568999999999999986 33 2245678999999998764
No 232
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=31.70 E-value=1.1e+02 Score=31.59 Aligned_cols=106 Identities=14% Similarity=0.276 Sum_probs=59.1
Q ss_pred eeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhhh--cCCCccc
Q 000199 22 FHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVA--MGSSRSS 99 (1872)
Q Consensus 22 FhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs--~GSsksg 99 (1872)
..|..+|..|.-.-||.|-=. |+..+||. |..| .+|++.-.-.... ..+..+ .+.|.|- ...++..
T Consensus 11 i~A~~L~~~~~~DPYv~v~l~--~~~~~kT~---v~~~----~nP~WnE~f~f~~-~~~~~~--~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 11 LEAHKLPVKHVPHPYCVISLN--EVKVARTK---VREG----PNPVWSEEFVFDD-LPPDVN--SFTISLSNKAKRSKDS 78 (126)
T ss_pred EEeeCCCCCCCCCeeEEEEEC--CEeEEEee---cCCC----CCCccCCEEEEec-CCCCcC--EEEEEEEECCCCCCCC
Confidence 457777776655555544322 22333332 3333 3566543322221 122111 2234441 2345889
Q ss_pred ccceeecchhhcccccCCeeeeecCCCCC-----CCCeEEEEeeee
Q 000199 100 ILGEATINLADYADASKPSTVLLPLHGGD-----SGTILHVTVQLL 140 (1872)
Q Consensus 100 iLGEasinlAdY~~a~kp~~VSLPLk~cn-----sGtvLHVtIQ~l 140 (1872)
++|++.|.++++.. ......-+||...+ .+.-|||.++..
T Consensus 79 ~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999999999876 55567788886653 236688888765
No 233
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=31.50 E-value=41 Score=33.64 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred Ccccccceeecchhhccc--ccCCeeeeecCCCC
Q 000199 96 SRSSILGEATINLADYAD--ASKPSTVLLPLHGG 127 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~--a~kp~~VSLPLk~c 127 (1872)
++..+||.++|.+++... ......--+||...
T Consensus 77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 477899999999999874 23334556778766
No 234
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=31.47 E-value=88 Score=31.45 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=19.3
Q ss_pred CcccccceeecchhhcccccCCeeeeecC
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPL 124 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1872)
++..++|++.|++++.... ....--+||
T Consensus 99 ~~~~~iG~~~i~l~~l~~~-~~~~~W~~L 126 (127)
T cd04030 99 REKKLLGQVLIDLSDLDLS-KGFTQWYDL 126 (127)
T ss_pred CCCceEEEEEEeccccccc-CCccceEEC
Confidence 5789999999999996442 333434443
No 235
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.90 E-value=1.4e+03 Score=30.61 Aligned_cols=191 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh
Q 000199 1077 FQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS 1156 (1872)
Q Consensus 1077 ~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q 1156 (1872)
++..+...+..+.-.+++.......+-+++-+..++ ..+++.+--.-+-..+.++..++
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~---------------~Ele~~~l~~gE~e~L~~e~~rL------ 217 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQL---------------EELEELNLQPGEDEELEEERKRL------ 217 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhcCCCCchHHHHHHHHHHH------
Q ss_pred HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH------HHHHhh---hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHh
Q 000199 1157 VRNSLQSVHDELHGERSLSDELKSRAIDISSQLN------EKQQQL---IDFDQQNSEMIQKIAELTSENQALMVSLQEY 1227 (1872)
Q Consensus 1157 ~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln------~~~~~e---~e~~~enSeL~~~~~~L~~en~a~mv~L~d~ 1227 (1872)
...+.|.....++..+|+ .-++.- .+-....++....+..+.+.=.+-+.+|++-
T Consensus 218 ----------------sn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea 281 (557)
T COG0497 218 ----------------SNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEA 281 (557)
T ss_pred ----------------hhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhh
Q 000199 1228 AEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEK 1304 (1872)
Q Consensus 1228 kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~ 1304 (1872)
..+-.++++++.-=-..|.-.++-|..++.+...--.++.++...++....+|.+++....-+..|++++..+..+.
T Consensus 282 ~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~ 358 (557)
T COG0497 282 SEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAEL 358 (557)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
No 236
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.88 E-value=2.6e+02 Score=31.67 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=29.6
Q ss_pred hHHHHHhHHhh--hhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhH
Q 000199 311 SIHELKLEVSS--LQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHL 364 (1872)
Q Consensus 311 sIEkLKsE~~s--L~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~L 364 (1872)
++..|...+-. -.|+|+..+. -..|..|-..+= .+|-|+|+.-+.||--|
T Consensus 34 dVi~L~e~Ld~~L~~~~ar~~gI--cpvr~~ly~~~F--~ELIRQVTi~C~ERGlL 85 (189)
T PF10211_consen 34 DVIQLQEWLDKMLQQRQARETGI--CPVREELYSQCF--DELIRQVTIDCPERGLL 85 (189)
T ss_pred HHHHHHHHHHHHHHHhcCCcccc--cHHHHHHHHHHH--HHHHHHHHhCcHHHhHH
Confidence 34444444422 1466776654 445555544333 57888899888888765
No 237
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=30.64 E-value=48 Score=33.71 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCC-----CCCCeEEEEeee
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPLHGG-----DSGTILHVTVQL 139 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~c-----nsGtvLHVtIQ~ 139 (1872)
+..+||++.|.++++..-..+.+.-+||.+- .+| -|||.|+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~l~~~~ 125 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIGLKVYI 125 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEEEEEEE
Confidence 7889999999999998444566777888542 244 78887763
No 238
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=30.49 E-value=45 Score=34.16 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=35.1
Q ss_pred hhhhhhhhc--CCCcccccceeecchhhcccccCCeeeeecCCCCC-----CCCeEEEEee
Q 000199 85 KLYKFVVAM--GSSRSSILGEATINLADYADASKPSTVLLPLHGGD-----SGTILHVTVQ 138 (1872)
Q Consensus 85 kiYkfVVs~--GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn-----sGtvLHVtIQ 138 (1872)
+...|.|-- ..++..++|.+.|++++... ..+...-+||+.-. +|.| |+.+.
T Consensus 62 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i-~l~~~ 120 (121)
T cd08401 62 RHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKV-HLELR 120 (121)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEE-EEEEE
Confidence 455566532 34567899999999999875 44567788886421 4655 88764
No 239
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.42 E-value=1.9e+02 Score=29.06 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=33.9
Q ss_pred Hhh-chhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCCh-HHHhhhhc
Q 000199 343 EIA-SGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSW-EAVKQGTE 391 (1872)
Q Consensus 343 Esk-rgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~-eelkqel~ 391 (1872)
|.| ..+.|+.|++.+..-|++|.+|-++||.-+. .| +.||.=+|
T Consensus 29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~-----~WQerlrsLLG 74 (79)
T COG3074 29 ELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN-----GWQERLRALLG 74 (79)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 444 3567999999999999999999999997654 35 34766555
No 240
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=30.27 E-value=57 Score=35.16 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=34.4
Q ss_pred cccccceeecchhhcccccCCeeeeecC-----CCCCCCCeEEEEeee
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPL-----HGGDSGTILHVTVQL 139 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPL-----k~cnsGtvLHVtIQ~ 139 (1872)
+..++|.++|.+++... ..+....+|| +.+..|+-|||.+|.
T Consensus 111 ~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 111 GAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred CCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 35799999999999875 5567788898 455678999999985
No 241
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=30.09 E-value=1.2e+02 Score=32.26 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=55.4
Q ss_pred HHhHHHHHHhhhhhccchhhhH-HHHHHHHHhhhHHhhhh---hhhhhhhhhhhhhhhhHHHHHHHHhhhhhh
Q 000199 1569 EQCETKVQELKHHLSISKKHSE-EMLWKLQDAIDEIENRK---KSEAAHLKKNEELGVKILELEAELQSLISD 1637 (1872)
Q Consensus 1569 eq~etk~qelk~qlsisKkhsE-eml~KLqdaide~e~rk---Ksea~~lK~~eEL~~kilElEaelq~~~sd 1637 (1872)
..|+.|.|++.+|+.+-|+|+- ...--|+.|+++|.+.= +-=..+..++.+...+|-|-++||+.+...
T Consensus 20 ~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 20 TGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999984 57888999999996532 222345667788889999999999887654
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.91 E-value=1.4e+03 Score=31.28 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=52.0
Q ss_pred cchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHhHHHhh
Q 000199 1002 SDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEE----SVKLALEVDSFKQSF 1077 (1872)
Q Consensus 1002 s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ee----s~~~~~El~slK~s~ 1077 (1872)
.+|+++..+...|+.+-..|+.+|.++...- +.|...=++++..++.+.-+ --++..||+.+++.+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q----------e~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQ----------EKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678888999999988888988877665543 45666667777777765432 345666777766666
Q ss_pred HhhHHHHHHHH
Q 000199 1078 QSLHDELLVER 1088 (1872)
Q Consensus 1078 qSLhdEl~aer 1088 (1872)
+.+..-+...+
T Consensus 649 ~~l~~si~~lk 659 (717)
T PF10168_consen 649 QDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHH
Confidence 66554444433
No 243
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.53 E-value=3.4e+02 Score=28.09 Aligned_cols=97 Identities=14% Similarity=0.246 Sum_probs=50.9
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHH
Q 000199 1003 DLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHD 1082 (1872)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhd 1082 (1872)
.+..+..+++.+.+.=..|-..+.....|..||+.+.....=..-=.. |--.+|+.+.-..+...++.+...+..+..
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~--vlv~~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN--LLVKTDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch--hhheecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445444444334444444444444444333321111111111 222489998888888888888777777776
Q ss_pred HHHHHHHhhhhHHHHHhHh
Q 000199 1083 ELLVERSLRDDLKSAVSDI 1101 (1872)
Q Consensus 1083 El~aersl~edl~~~vsdL 1101 (1872)
.....+.-..++++.+-.+
T Consensus 89 ~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 89 QEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555544443
No 244
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=29.44 E-value=72 Score=34.29 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCCcccccceeecchhhccc---ccCCeeeeecCCCC----------CCCCeEEEEeeeec
Q 000199 94 GSSRSSILGEATINLADYAD---ASKPSTVLLPLHGG----------DSGTILHVTVQLLT 141 (1872)
Q Consensus 94 GSsksgiLGEasinlAdY~~---a~kp~~VSLPLk~c----------nsGtvLHVtIQ~l~ 141 (1872)
+.++..+||.+.|++.++.. ...+...-+||.+. .++.-|||.|+.-+
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 45578999999999999864 33556677898764 34588999988765
No 245
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=29.29 E-value=43 Score=34.07 Aligned_cols=103 Identities=12% Similarity=0.202 Sum_probs=56.1
Q ss_pred eeecccccccccc-----eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh-hc-C
Q 000199 22 FHATHIQQTGWDK-----LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-G 94 (1872)
Q Consensus 22 FhAtqVp~~gwd~-----L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-G 94 (1872)
+.|.++|..++.. ..|.+-|....+...||. ..-.+-++.|...++=.+.. +. .+....|.| .. .
T Consensus 20 ~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~-v~~~~~~P~wne~f~~~~~~------~~-~~~~l~v~v~d~~~ 91 (131)
T cd04026 20 REAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTK-TIKKTLNPVWNETFTFDLKP------AD-KDRRLSIEVWDWDR 91 (131)
T ss_pred EEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecce-eecCCCCCCccceEEEeCCc------hh-cCCEEEEEEEECCC
Confidence 5677777544333 223333322223444443 33334456666554433221 11 122333333 22 2
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEE
Q 000199 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILH 134 (1872)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLH 134 (1872)
..+..++|.+.+++++.... +..--.||.+-.+|.+-.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~~~~~~~ 129 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQEEGEYYN 129 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC--ccCceEECcCcccccccc
Confidence 23778999999999999864 667778988888887654
No 246
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.03 E-value=1.9e+03 Score=31.35 Aligned_cols=364 Identities=17% Similarity=0.233 Sum_probs=167.0
Q ss_pred HHHHHHhhhcccCCcccccccccccccccccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhHH---HHHHHHHHhhhccc
Q 000199 865 QNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLE--VLQRNACQKIRQLMQEKKA---LIDEKDRAEMSFSK 939 (1872)
Q Consensus 865 q~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le--~~q~~~c~kil~l~~ek~~---l~~e~d~~~~~~~~ 939 (1872)
+.++|++|+|-.-.+++.++ +|||=- ...----..||-+++|--+ -+..|+.|..-+..
T Consensus 124 ~~~vq~lF~SVqLNvNNP~F----------------LIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~A~ktiek 187 (1174)
T KOG0933|consen 124 NSKVQDLFCSVQLNVNNPHF----------------LIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEAAEKTIEK 187 (1174)
T ss_pred hhHHHHHHHHhcccCCCCce----------------EEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 46778888877666666333 233210 0000011346666666533 45677788888888
Q ss_pred cchhHHHHHHHHHhhHHhhhhhhhccHH---HHHHHHHHHHHHhhhhccchH---HHHhHhhhhhccccchhHHHHHHHH
Q 000199 940 SESDIVLVKQKFEHDLRNMIDKQSVSNA---LLQKLQLRFEAVADKLKVSSE---VEENNAQRHTDLFSDLDYLEVELQQ 1013 (1872)
Q Consensus 940 aes~~~~~kqk~e~d~~~m~~kl~~s~~---l~qklq~~~e~~~~k~k~~se---~ee~y~~~~~~l~s~l~~~e~elq~ 1013 (1872)
-|..+-.++-=++.+|.--.+||----- =.|++..+++... |+=|++| ++++.- .+.-.+..++.-+-.
T Consensus 188 KetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~-R~~ia~eY~~~~~~~~----~~~~~i~e~~~~i~~ 262 (1174)
T KOG0933|consen 188 KETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLS-RICIAYEYLQAEEKRK----NSAHEIEEMKDKIAK 262 (1174)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 8888888888888888777777642211 1345555555443 3334444 222211 111111112111111
Q ss_pred hhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhh
Q 000199 1014 LSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDD 1093 (1872)
Q Consensus 1014 l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~ed 1093 (1872)
+...=...-.+|..+.--..|+...+ -+++..+-++|-..++.+..+.++...=++-.+++++..+..+...+....+
T Consensus 263 l~e~~~k~~~ei~~le~~ikei~~~r--d~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e 340 (1174)
T KOG0933|consen 263 LDESLGKTDKEIESLEKEIKEIEQQR--DAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEE 340 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH--HHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHH
Confidence 11111111122222222222221111 1444455556666666666666666666666666666666665555555444
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhcccc
Q 000199 1094 LKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERS 1173 (1872)
Q Consensus 1094 l~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~ 1173 (1872)
....+..-.+++..- ...... ..+....+.-.....+..+++|+.=+.+...
T Consensus 341 ~~~~l~~k~~~~~~~-------~~~~~~---------------------~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~ 392 (1174)
T KOG0933|consen 341 DRKKLKEKEKAMAKV-------EEGYEK---------------------LKEAFQEDSKLLEKAEELVESLTAGLSSNED 392 (1174)
T ss_pred HHHHHHHHHHHHhhh-------hhhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 444333322222211 111111 1111112222223344445555444444333
Q ss_pred chHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhH---HHhhhhhccccchHHHHHHHHH
Q 000199 1174 LSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYA---EESSRLASEGNTSKETLQSLRD 1250 (1872)
Q Consensus 1174 ~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~k---ee~aq~a~e~~~Lk~~L~Sl~e 1250 (1872)
..-.++..-.+.-+.++.-. .+.-.-+..+..+...|-......+..-.++. ++-.++.-++..|+..|+++.=
T Consensus 393 ~e~~l~~ql~~aK~~~~~~~---t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~ 469 (1174)
T KOG0933|consen 393 EEKTLEDQLRDAKITLSEAS---TEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY 469 (1174)
T ss_pred chhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11122211111111111111 01111122233333333333444444444444 3336677778888888888876
Q ss_pred HHhhhhhhh---HhhhhHHHHhhhchhhhhhhhhc
Q 000199 1251 ELQSERSLR---DELKNVVTDLTSQLNEKHCQLLD 1282 (1872)
Q Consensus 1251 El~~erslr---eeLE~~V~~L~skLdEk~~qL~~ 1282 (1872)
++.....|+ +.|-..+..|+..++.+-.++.+
T Consensus 470 ~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 470 KIGQEEALKQRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 666555554 46666677777777777665543
No 247
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.86 E-value=9e+02 Score=32.87 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=58.9
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD 538 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee 538 (1872)
..|+..+-....+|..++.+|+.|....+-|+--||....+-|. ....++++-+-...++.-.+..|-.+..-=+.
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~----L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK----LMKRVDRVLQLLNSQLPVLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 56777778888888888888888888888888888777654222 22344444333344566666666555554456
Q ss_pred HHHHHHHHhhhHhHH
Q 000199 539 VDEQVLRFSEERRDL 553 (1872)
Q Consensus 539 l~~Q~~rF~eDl~a~ 553 (1872)
|+.|+..+.+-++.+
T Consensus 644 ~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 644 MKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555554
No 248
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=28.84 E-value=1.1e+02 Score=34.94 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=20.5
Q ss_pred hhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHH
Q 000199 325 HADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLE 369 (1872)
Q Consensus 325 qad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcE 369 (1872)
-+..++.++..|+++|.++.++ ++-.++.+|+.|.|.+++|||
T Consensus 113 ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e 155 (181)
T PF04645_consen 113 EIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKERE 155 (181)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHH
Confidence 3444444555555555544443 233444455555555555554
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.47 E-value=4.4e+02 Score=30.59 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=43.7
Q ss_pred HHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHh
Q 000199 1065 KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKE 1132 (1872)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEe 1132 (1872)
++.-|-..|...++.+..+......-.+.++..++++-.++..+..++.+...-+++| |..|++.++.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555566666667777777777777777777766766 7788877765
No 250
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=28.23 E-value=66 Score=32.30 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=31.0
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEe
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTV 137 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtI 137 (1872)
+..++|++.+++++... ..+....+||..-..| -||+.|
T Consensus 77 ~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~~~~g-~l~~~~ 115 (119)
T cd04036 77 MDDHLGTVLFDVSKLKL-GEKVRVTFSLNPQGKE-ELEVEF 115 (119)
T ss_pred CCcccEEEEEEHHHCCC-CCcEEEEEECCCCCCc-eEEEEE
Confidence 78899999999998765 5789999999876544 456654
No 251
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.21 E-value=58 Score=34.44 Aligned_cols=38 Identities=42% Similarity=0.581 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHH
Q 000199 998 TDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL 1052 (1872)
Q Consensus 998 ~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al 1052 (1872)
.++|..|+.||.++..+ ..+++.+|.-+.+|.+||.+|
T Consensus 4 ~elfd~l~~le~~l~~l-----------------~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 4 KEIFDALDDLEQNLGVL-----------------LKELGALKKQLAELLEENTAL 41 (110)
T ss_pred hHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
No 252
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.84 E-value=59 Score=34.09 Aligned_cols=38 Identities=47% Similarity=0.660 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHH
Q 000199 998 TDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL 1052 (1872)
Q Consensus 998 ~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al 1052 (1872)
.+||..|+.||.+|+.+ ..+++.+|..+.+|.+||.+|
T Consensus 4 ~~l~~~l~~le~~l~~l-----------------~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQL-----------------LEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.80 E-value=8.1e+02 Score=31.72 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHH
Q 000199 1242 KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSEL 1321 (1872)
Q Consensus 1242 k~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hL 1321 (1872)
..+|.-+.+.|+..|.=...+...-.+|..+|+|- -+|+....+++-+.++. ++.+|..+|
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea--------------~rl~elreg~e~e~~rk-----elE~lR~~L 318 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA--------------PRLSELREGVENETSRK-----ELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh--------------hhhhhhhcchhHHHHHH-----HHHHHHHHH
Confidence 45677777888888888777777777888888744 44555555555555532 334555555
Q ss_pred HHHHhhhhhh-----------hHHHHHH--HHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHh
Q 000199 1322 SEMHELLLAV-----------DVRLIFT--RTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEEN 1388 (1872)
Q Consensus 1322 sElke~l~A~-----------dvriiF~--KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keN 1388 (1872)
++...-+++- =|+..+. -.+|+.+-|.---||-+-+.-.+.++||--.+-..+-.-..+= -
T Consensus 319 ~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss------l 392 (575)
T KOG4403|consen 319 EKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS------L 392 (575)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc------h
Confidence 5555444442 1233322 2367788888888888888888889988777766654433322 2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHhhhhhhh
Q 000199 1389 ARLLTSLDTLRSELDSAIAENRVLFHENNS 1418 (1872)
Q Consensus 1389 aeLl~~I~eLesELeasiaekR~L~nand~ 1418 (1872)
...--+|.+.++-|..+....|+..++.--
T Consensus 393 DdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 393 DDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234468999999999999999998888753
No 254
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.57 E-value=6e+02 Score=31.92 Aligned_cols=80 Identities=30% Similarity=0.353 Sum_probs=59.2
Q ss_pred HHHHHHHhhhccHHHHHHHHhhhhHHh----hhhhhhhhHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHhHHH
Q 000199 1007 LEVELQQLSSKNRDLAQEILALQVVTE----EFDRSKQTISELTEENRALMVALQD-------KSEESVKLALEVDSFKQ 1075 (1872)
Q Consensus 1007 ~e~elq~l~s~n~~l~~~i~~l~~v~~----E~~~tK~~~~el~~En~al~~slqd-------k~ees~~~~~El~slK~ 1075 (1872)
=.+|.++|.+.|+.|.+++.-...|.. +.+++..+++-+.+||+.+-.+|++ |.|++-.+-+|+..--.
T Consensus 97 ~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 97 RQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 357889999999999999998887754 5567778899999999999888876 55666666666655544
Q ss_pred hhHhhHHHHHH
Q 000199 1076 SFQSLHDELLV 1086 (1872)
Q Consensus 1076 s~qSLhdEl~a 1086 (1872)
--|-|++|-++
T Consensus 177 yqq~L~~eyQa 187 (401)
T PF06785_consen 177 YQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHhhc
Confidence 44555555443
No 255
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=27.42 E-value=1.2e+02 Score=30.45 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCC
Q 000199 94 GSSRSSILGEATINLADYADASKPSTVLLPLH 125 (1872)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk 125 (1872)
+.++..++|++.|.+++.... ....+-+||.
T Consensus 92 ~~~~~~~iG~~~i~L~~l~~~-~~~~~w~~L~ 122 (123)
T cd08390 92 RFSRHCIIGHVLFPLKDLDLV-KGGVVWRDLE 122 (123)
T ss_pred cCCCCcEEEEEEEeccceecC-CCceEEEeCC
Confidence 334779999999999987663 3445667764
No 256
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.38 E-value=8.8e+02 Score=26.82 Aligned_cols=77 Identities=30% Similarity=0.337 Sum_probs=60.5
Q ss_pred HhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhh-h-cccccchHHHHHHHHHhhhHhhhhh
Q 000199 1230 ESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL-L-DLDQQKSELVQLKLLVLDLESEKSR 1306 (1872)
Q Consensus 1230 e~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL-~-~~d~~~~EL~~Lk~qvsdLese~S~ 1306 (1872)
+......++......+..+.+++.....-|+.+...+..|..+..-...+- + +|+....++..|+..+..|+.+...
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666677888888888888889999999999988888766554 3 6999999999999999988877653
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=27.35 E-value=1.1e+03 Score=27.86 Aligned_cols=79 Identities=25% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcc----cccchHHHHHHHH
Q 000199 1221 MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL----DQQKSELVQLKLL 1296 (1872)
Q Consensus 1221 mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~----d~~~~EL~~Lk~q 1296 (1872)
...|.|.-.+-++-..++..||+.|.....++..-. ..+..|...+..+...+..+ ...++|...|+..
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~-------~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE-------SQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 345666666667777777777777776666655433 33333333333333333222 2334455555555
Q ss_pred HhhhHhhhhh
Q 000199 1297 VLDLESEKSR 1306 (1872)
Q Consensus 1297 vsdLese~S~ 1306 (1872)
+..|+.+++.
T Consensus 89 l~~le~El~~ 98 (202)
T PF06818_consen 89 LGQLEAELAE 98 (202)
T ss_pred hhhhHHHHHH
Confidence 5555544443
No 258
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.12 E-value=6.8e+02 Score=27.32 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=34.0
Q ss_pred hhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc
Q 000199 1454 LLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE 1494 (1872)
Q Consensus 1454 LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~ 1494 (1872)
.....+-+.|||++-=..++=|+-.+|.+|.++=-.|+.=+
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE 118 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDE 118 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCc
Confidence 33466789999999999999999999999999866665544
No 259
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.75 E-value=1.2e+03 Score=28.31 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=87.5
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhh
Q 000199 1028 LQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSA 1107 (1872)
Q Consensus 1028 l~~v~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~e 1107 (1872)
-+...++...+...+++|+..|...++... +.+..+..++.++...++.+.+.+-......+.......+..... .
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~---~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r-~ 91 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNA---ECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEER-K 91 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344455555666677888889988888764 455777888888888888888888777666666665555544441 1
Q ss_pred hhhhhhhhhHhhHHHHHHHHhhhHhhhhh--HHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhh
Q 000199 1108 KHSQLLDFDQQKSELIQKTAVLTKENQDL--MVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDI 1185 (1872)
Q Consensus 1108 K~~sL~sfd~enqeLl~~~~~dlEea~sl--~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dv 1185 (1872)
+-..+.+.+++..+++ |--.+ .|-.+.++++...+ -++++.|..+- ....-+++...+|
T Consensus 92 ~~~~~l~~~~~l~diL--------ElP~Lm~~ci~~g~y~eALel-------~~~~~~L~~~~----~~~~lv~~i~~ev 152 (338)
T PF04124_consen 92 KASLLLENHDRLLDIL--------ELPQLMDTCIRNGNYSEALEL-------SAHVRRLQSRF----PNIPLVKSIAQEV 152 (338)
T ss_pred HHHHHHHHHHHHHHHH--------hhHHHHHHHHhcccHhhHHHH-------HHHHHHHHHhc----cCchhHHHHHHHH
Confidence 1222222233333321 11111 33333444433322 33344333333 3366677777777
Q ss_pred HHHHHHHHHhhhhhhhhhhHHH
Q 000199 1186 SSQLNEKQQQLIDFDQQNSEMI 1207 (1872)
Q Consensus 1186 es~Ln~~~~~e~e~~~enSeL~ 1207 (1872)
+..+..-+.+.+.--..+=.|.
T Consensus 153 ~~~~~~ml~~Li~~L~~~l~l~ 174 (338)
T PF04124_consen 153 EAALQQMLSQLINQLRTPLKLP 174 (338)
T ss_pred HHHHHHHHHHHHHHHcCcccHH
Confidence 7766666666555444443333
No 260
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.42 E-value=3.7e+02 Score=28.97 Aligned_cols=69 Identities=29% Similarity=0.453 Sum_probs=40.4
Q ss_pred hhhccHHHHHHHHhhhhHHhhh-------hhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHH
Q 000199 1014 LSSKNRDLAQEILALQVVTEEF-------DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHD 1082 (1872)
Q Consensus 1014 l~s~n~~l~~~i~~l~~v~~E~-------~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhd 1082 (1872)
+...-..+.+||..|-.-.+++ ..++.-+++|...-.+++.-+--|+|+---|-.-|.++|.-++..-+
T Consensus 42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666554444333 34445555666666666777777777777777777777766655433
No 261
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=26.24 E-value=1.3e+02 Score=30.43 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=52.2
Q ss_pred EEEeeeecccccccccc-----eEEEEeecCCCcc--ccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhh
Q 000199 18 FRLQFHATHIQQTGWDK-----LFISFIPADSGKA--IGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFV 90 (1872)
Q Consensus 18 FklqFhAtqVp~~gwd~-----L~vSiVp~D~GK~--taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfV 90 (1872)
+.|+..|.++|...|.. ..|.+.+...|+. ..||+ ..-.+-+-.|...++=.+ ..+... ..+|.
T Consensus 3 ~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~-vi~~t~nP~wne~f~f~~---~~~~~~-----~l~~~ 73 (120)
T cd04048 3 VELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTE-VIKNNLNPDFVTTFTVDY---YFEEVQ-----KLRFE 73 (120)
T ss_pred EEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEe-EeCCCCCCCceEEEEEEE---EeEeee-----EEEEE
Confidence 56788888888766643 2344444432222 22222 222333445655443221 111111 22233
Q ss_pred h---hc---CCCcccccceeecchhhcccccCCeeeeecC
Q 000199 91 V---AM---GSSRSSILGEATINLADYADASKPSTVLLPL 124 (1872)
Q Consensus 91 V---s~---GSsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1872)
| -+ +.++..++|++.+++++.+.. ....+.+||
T Consensus 74 V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~-~~~~~~~~l 112 (120)
T cd04048 74 VYDVDSKSKDLSDHDFLGEAECTLGEIVSS-PGQKLTLPL 112 (120)
T ss_pred EEEecCCcCCCCCCcEEEEEEEEHHHHhcC-CCcEEEEEc
Confidence 3 12 146788999999999999863 456677887
No 262
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.12 E-value=5.1e+02 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQ 498 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQ 498 (1872)
+.++.-+--+.+|+-.||..+++++.++.+=-..-..+++
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~ 46 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQ 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777655555555555
No 263
>PRK10698 phage shock protein PspA; Provisional
Probab=25.91 E-value=5.8e+02 Score=29.69 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhh--------hhhhHHHHHHHHHhhhccHHH
Q 000199 1390 RLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEH--------KSQLALEVERMKQLLVGSEEE 1461 (1872)
Q Consensus 1390 eLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Ee--------k~k~a~Eve~lK~LL~~~eee 1461 (1872)
++...|..++..+..+++..+.+-..++...+..+.+..+.+..+..-.|+ |..++..+..++.-+......
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~ 114 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDET 114 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667889999999999999999999999998888888887766555 223344444444444444444
Q ss_pred Hhhhh
Q 000199 1462 IDDLM 1466 (1872)
Q Consensus 1462 id~l~ 1466 (1872)
++.|.
T Consensus 115 ~~~L~ 119 (222)
T PRK10698 115 LARMK 119 (222)
T ss_pred HHHHH
Confidence 44433
No 264
>smart00338 BRLZ basic region leucin zipper.
Probab=25.87 E-value=1.7e+02 Score=27.50 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1872)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1872)
++.|.+|-.++..+..+.+.|..++++|...+..|++.+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888888887653
No 265
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=25.87 E-value=1.5e+03 Score=29.19 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=84.7
Q ss_pred HHHhHhhhhhhhhhhh--------hhhhhH-hhHHH----HHHHH-hhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhh
Q 000199 1096 SAVSDITSQLSAKHSQ--------LLDFDQ-QKSEL----IQKTA-VLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSL 1161 (1872)
Q Consensus 1096 ~~vsdLaSEL~eK~~s--------L~sfd~-enqeL----l~~~~-~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~l 1161 (1872)
+.-..||-.|+...++ +.+.++ .+... +..++ ...+.-..+.-.+-.+...-..++-+...++..+
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666665 555554 22222 33332 4455556666666666666667778888888888
Q ss_pred hhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 000199 1162 QSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELT 1214 (1872)
Q Consensus 1162 qeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~ 1214 (1872)
-+...+...+...+.+=+++..++.+.+...+.+..+..-..++|...|.++.
T Consensus 192 ~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 192 SEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888898999999998888888888888888888888888775
No 266
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=25.82 E-value=1.7e+02 Score=28.95 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=48.4
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 310 SSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 310 dsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
++|++||.+++-|.|.|-...|+|..|..-+=.=-.+--+++...-....+-+.+|+++..+.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999965544333333456677777888888888888776543
No 267
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.76 E-value=1.1e+03 Score=31.60 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhh
Q 000199 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLARE 1381 (1872)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksE 1381 (1872)
..|.-+|+..+-+.+.+....-+..-++.+.++..++.+++..++..++..
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446777888888888888888888888888888888888888888877643
No 268
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=25.31 E-value=1.5e+02 Score=38.63 Aligned_cols=291 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccc--cchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHH
Q 000199 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLF--SDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISE 1044 (1872)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~--s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~e 1044 (1872)
+-+..|+..++.|...++.....=..|.....+++ ..|+.|..+|+.|..+=..-.+++..+-.. ......+
T Consensus 105 ~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~------I~~l~~~ 178 (619)
T PF03999_consen 105 QEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREE------IISLMEE 178 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 33455666667777777654443345556666777 477777777777655443333333222211 1111122
Q ss_pred HHHHHH-----HHHHHhhcchhHHHHHH-HHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHh
Q 000199 1045 LTEENR-----ALMVALQDKSEESVKLA-LEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1872)
Q Consensus 1045 l~~En~-----al~~slqdk~ees~~~~-~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1872)
|...-. ..+.+.. ..+.+..|. .=|+.|+.-++.|.++...-+.-.+++..++..|=..|+.-......|-..
T Consensus 179 L~~~~~~~~~e~~l~~~~-~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~ 257 (619)
T PF03999_consen 179 LGIDPERTSFEKDLLSYS-EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEE 257 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCCCcccccchhhccccc-cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence 211111 1111111 122222322 223344444444444333333333445555555555555444444555444
Q ss_pred hHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhh
Q 000199 1119 KSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLID 1198 (1872)
Q Consensus 1119 nqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e 1198 (1872)
+.-+-....+.++.+-. +|..++-+..+.. ....|.-|++|=+.++-.......+.--+.|.-+ =.-.-.+|.+
T Consensus 258 ~~~ls~~~i~~l~~El~---RL~~lK~~~lk~~--I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-E~lL~~hE~E 331 (619)
T PF03999_consen 258 NSGLSLDTIEALEEELE---RLEELKKQNLKEF--IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-EELLELHEEE 331 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcchHHHHHHHHHHHH---HHHHHHHHhHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-HHHHHHHHHH
Confidence 44332222222222111 1111111111111 1125566666666666555444444333333322 0012233444
Q ss_pred hhhhhhHHHHHHHHH-----hhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhch
Q 000199 1199 FDQQNSEMIQKIAEL-----TSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1872)
Q Consensus 1199 ~~~enSeL~~~~~~L-----~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skL 1273 (1872)
+............-| ...-..-+.+|+++..+.+++..=+-+ | |++| ..-+.+...|=..+..|+..|
T Consensus 332 i~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~----L--LkEE-k~rk~i~k~lPkle~~L~~~l 404 (619)
T PF03999_consen 332 IERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGH----L--LKEE-KERKRIQKKLPKLEEELKKKL 404 (619)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG----------H--HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccH----H--HHHH-HHHHHHHHHhhHHHHHHHHHH
Confidence 444444444444443 334456677788888666666644422 2 3333 333444445555666666666
Q ss_pred hhhh
Q 000199 1274 NEKH 1277 (1872)
Q Consensus 1274 dEk~ 1277 (1872)
.+-+
T Consensus 405 ~~wE 408 (619)
T PF03999_consen 405 EEWE 408 (619)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 269
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=25.01 E-value=2.8e+02 Score=32.71 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccc-----hhHHHHHHHHhHHHHHHHHHHHhh
Q 000199 1446 LEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGY-----IDEQKMLQNQCNELRRKLSEQILK 1520 (1872)
Q Consensus 1446 ~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~-----~~el~~l~~~~~el~qklseqilk 1520 (1872)
-=+.-+-.++-.+=+.|-+.+++|++.++.+..+++.++-.+.++-|++.+ -.|-..|++....+.+.|-++|=|
T Consensus 66 TIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~ 145 (220)
T KOG3156|consen 66 TITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISK 145 (220)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888999999999999999999999999999999999999775 256666777777788899999877
Q ss_pred h-hhhc
Q 000199 1521 T-EEFR 1525 (1872)
Q Consensus 1521 t-eefk 1525 (1872)
+ -|||
T Consensus 146 ~~a~~r 151 (220)
T KOG3156|consen 146 TTAEFR 151 (220)
T ss_pred cchhce
Confidence 4 4554
No 270
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=24.82 E-value=90 Score=31.40 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCcccccceeecchhhcccccCCeeeeecC
Q 000199 95 SSRSSILGEATINLADYADASKPSTVLLPL 124 (1872)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1872)
.++..++|++.|.++++.. ..+.+.=.+|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred CcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 4577899999999998764 4444444444
No 271
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1.7e+03 Score=29.26 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=58.8
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhcc
Q 000199 1383 QCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGS 1458 (1872)
Q Consensus 1383 ~~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~ 1458 (1872)
.|+-+..++-.+|--.+.++.....|-|+|-..-+++.+.| +|.=|+..++-=...+|-+=|-+.-.+|+..
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L----~Rsfavtdellf~sakhddhvR~aykllt~i 457 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL----NRSFAVTDELLFMSAKHDDHVRLAYKLLTRI 457 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 58889999999999999999999999999988877666655 5666777777777778878787888887754
No 272
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=24.63 E-value=1.7e+02 Score=31.27 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccccceeecchhhccccc--CCeeeeecCC
Q 000199 98 SSILGEATINLADYADAS--KPSTVLLPLH 125 (1872)
Q Consensus 98 sgiLGEasinlAdY~~a~--kp~~VSLPLk 125 (1872)
..+||.+.|+++++.... ....++.||.
T Consensus 91 ~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 91 RRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred CceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 479999999999998653 3367778884
No 273
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=24.54 E-value=9.2e+02 Score=26.11 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=48.6
Q ss_pred HhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHH
Q 000199 933 AEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQ 1012 (1872)
Q Consensus 933 ~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq 1012 (1872)
++.+...|-..+-.+.+... ++...+..|.-.-.-+...=.-+..|+.+.++-+===-==|-+-|+.=.+|+-...|+.
T Consensus 7 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir 85 (213)
T PF00015_consen 7 AQEANEEAVEEMEEIQESIE-EIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIR 85 (213)
T ss_dssp HHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHH
Confidence 34444444334444433333 23333333333333344444455556655443221111113455677778888888888
Q ss_pred HhhhccHHHHHHHHh
Q 000199 1013 QLSSKNRDLAQEILA 1027 (1872)
Q Consensus 1013 ~l~s~n~~l~~~i~~ 1027 (1872)
.|..+=.+.+.+|..
T Consensus 86 ~LA~~t~~~~~~I~~ 100 (213)
T PF00015_consen 86 KLAEQTSESAKEISE 100 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHH
Confidence 888887777777765
No 274
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=24.50 E-value=50 Score=33.30 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred hhhhhhhhh-hc-CCCcccccceeecchhhcccccCCeeeeecCC
Q 000199 83 DEKLYKFVV-AM-GSSRSSILGEATINLADYADASKPSTVLLPLH 125 (1872)
Q Consensus 83 ~ekiYkfVV-s~-GSsksgiLGEasinlAdY~~a~kp~~VSLPLk 125 (1872)
..+...|.| .- ..++..++|++.|++++..... +.+.-+||+
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 344444554 22 3457899999999999987544 666667765
No 275
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.46 E-value=1.4e+03 Score=28.12 Aligned_cols=74 Identities=28% Similarity=0.360 Sum_probs=52.5
Q ss_pred hhhHhhhhhccccccccccccchHHhhhhhhHHHHHHH---HHHHHHHHHHHhhhhhHHHhHHHHHHHHHHhhHHHHHHH
Q 000199 639 NRHLACQDQYIGVKKQHLGGDILIEDLKRSLYLQEGLY---RKVEEEACELLSVNIYLDVFSKTLQKTLLEASGEIRLMK 715 (1872)
Q Consensus 639 ~Kl~~~~n~~~~~k~q~l~~~i~~e~l~rs~~lqe~l~---~~ve~e~~em~~~ni~~~vfs~~l~et~~~a~~~i~~mk 715 (1872)
.|+.++.-++..+|.++ +|||.| |++|| ..+-++|.-|...=| +||+.+-+--.+|+.++
T Consensus 236 Gria~Le~eLAmQKs~s-------eElkss---q~eL~dfm~eLdedVEgmqsTil-------iLQq~Lketr~~Iq~l~ 298 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQS-------EELKSS---QEELYDFMEELDEDVEGMQSTIL-------ILQQKLKETRKEIQRLK 298 (330)
T ss_pred ccHHHHHHHHHHHHhhH-------HHHHHh---HHHHHHHHHHHHHHHhcchhhHH-------HHHHHHHHHHHHHHHHH
Confidence 47888888999999777 788865 67888 444567777766544 45677777778888888
Q ss_pred HHHHHHHHHhhcch
Q 000199 716 ERMDELSHQLELST 729 (1872)
Q Consensus 716 er~~~l~~ql~~s~ 729 (1872)
--+..+++-.-+++
T Consensus 299 k~~~q~sqav~d~~ 312 (330)
T KOG2991|consen 299 KGLEQVSQAVGDKK 312 (330)
T ss_pred HHHHHHHHHhcccc
Confidence 77766666554443
No 276
>PF14992 TMCO5: TMCO5 family
Probab=24.44 E-value=8.3e+02 Score=29.97 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=85.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHh---
Q 000199 957 NMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTE--- 1033 (1872)
Q Consensus 957 ~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~--- 1033 (1872)
.+..|++.-+.-+|.|..++-.+.|..+=+ -+++|-.- +-=-+|-.||-+---|.-+|+-+++-|-+|+.-..
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~--e~e~~~~~--~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRS--EEEDIISE--ERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCch--hHHhhhhh--chHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 467788888999999999999998877655 22333331 11123455666666677777777777666655432
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHH--------------HHHHHhHHHhhHhhHHHHHHHHHhhhhH
Q 000199 1034 -----EFDRSKQTISELTEENRALMVALQDKSEESVKL--------------ALEVDSFKQSFQSLHDELLVERSLRDDL 1094 (1872)
Q Consensus 1034 -----E~~~tK~~~~el~~En~al~~slqdk~ees~~~--------------~~El~slK~s~qSLhdEl~aersl~edl 1094 (1872)
|=.-++..+++....=|-+..+.-....+..++ +.++.-+|+-|+-..+ +.++.+.+.+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~--ekE~~lLe~e 175 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE--EKEMLLLEKE 175 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333344445555444444444444444444443 6677777777766655 6677776666
Q ss_pred HHHHhHhhhh
Q 000199 1095 KSAVSDITSQ 1104 (1872)
Q Consensus 1095 ~~~vsdLaSE 1104 (1872)
-+.+-...|+
T Consensus 176 l~k~q~~~s~ 185 (280)
T PF14992_consen 176 LSKYQMQDSQ 185 (280)
T ss_pred HHHHhchhhc
Confidence 6555444444
No 277
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=24.26 E-value=1.4e+03 Score=28.92 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=47.8
Q ss_pred HHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHH
Q 000199 947 VKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEIL 1026 (1872)
Q Consensus 947 ~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~ 1026 (1872)
-.+.+...+..+-..+..-..-++.++.-.+.+....+..++. .|......+.+.++.++.+...-..++..+++-..
T Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T TIGR01000 166 QNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFN--PYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQ 243 (457)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc--cHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555555555555555566666666666666666555554 34433446666666666654433333333333333
Q ss_pred hhhhHHhhhhhhhhhHHH
Q 000199 1027 ALQVVTEEFDRSKQTISE 1044 (1872)
Q Consensus 1027 ~l~~v~~E~~~tK~~~~e 1044 (1872)
.++....++...+..+++
T Consensus 244 ~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 244 QIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333344444333333
No 278
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.23 E-value=7.8e+02 Score=29.91 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=59.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD 538 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee 538 (1872)
..+.+.|-.+...|+....|-..|+.+|+.- ++|||.+|+.. .-+|+.|== .-.+-+++|.|
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekk-------k~ELER~qKRL-~sLq~vRPA----------fmdEyEklE~E 233 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKK-------KQELERNQKRL-QSLQSVRPA----------FMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHhcChH----------HHHHHHHHHHH
Confidence 4556666666666777777777777777654 45566655521 124444411 12345788888
Q ss_pred HHHHHHHHhhhHhHHHhhhHHHHHhhhhH
Q 000199 539 VDEQVLRFSEERRDLESLNKELERRAVSA 567 (1872)
Q Consensus 539 l~~Q~~rF~eDl~a~~~~kvEqEqRAI~A 567 (1872)
|+++-..|.+-.+-++-+..+.|.+.-+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888888887777765443
No 279
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=24.11 E-value=1.3e+03 Score=27.74 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHhHHHhhhhhhhhHHhHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML------GELQNLRNEHSSCLYTVSSAKAEI 532 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~------~ElqnLr~EhS~~l~tIs~Leaqv 532 (1872)
..+..++-.+..+|+.++.+.+.+..++......+......+.-.+.=.. .++...+.++..--..+..+++++
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l 219 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAEL 219 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHH
Q 000199 533 EAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQK 587 (1872)
Q Consensus 533 e~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQe 587 (1872)
..+..+++.--..+. ........+.+.+.-.+++.+..++-+...+-.++..
T Consensus 220 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 220 EVLKRQIDELQLERQ---QIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 280
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=23.99 E-value=1e+03 Score=26.52 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=16.0
Q ss_pred HhhhhhhhHhhhhHHHHhhhchhhhhhhh
Q 000199 1252 LQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1872)
Q Consensus 1252 l~~erslreeLE~~V~~L~skLdEk~~qL 1280 (1872)
+..-..+|..++...-.+++.+.+.+..+
T Consensus 39 ~~~~~vtk~d~e~~~~~~~a~~~eLr~el 67 (177)
T PF07798_consen 39 VAQDLVTKSDLENQEYLFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566665555555555555555
No 281
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.77 E-value=1.5e+02 Score=38.74 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=42.5
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000199 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM 507 (1872)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~ 507 (1872)
|.-.++-|=-+|.+||+.|...-|+|..-+.|-.++-+.||-+.||.|.|.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 556677788888888999988888888888888888888888888887764
No 282
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.70 E-value=1.4e+03 Score=31.53 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=60.0
Q ss_pred hccchHHHHhHhhhhhccc----------cchhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHH
Q 000199 983 LKVSSEVEENNAQRHTDLF----------SDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL 1052 (1872)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~----------s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al 1052 (1872)
...--|+|-+.+|++.+++ -++-+|+.++|++.-+=.+..+...-=.....=+-+|-. .-|..-.+..
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd--Erlqlhlker 211 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD--ERLQLHLKER 211 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH--HHHHHHHHHH
Confidence 4444556655555555443 455566666665554444444433211111111111111 3455566778
Q ss_pred HHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhh
Q 000199 1053 MVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDIT 1102 (1872)
Q Consensus 1053 ~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLa 1102 (1872)
|++++||+ .|-.|++++|+-+.-+.-.....+.--++|-+.+.+|-
T Consensus 212 maAle~kn----~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 212 MAALEDKN----RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999987 57788888888765554444444444444444444443
No 283
>PF14992 TMCO5: TMCO5 family
Probab=23.65 E-value=2.9e+02 Score=33.61 Aligned_cols=31 Identities=32% Similarity=0.310 Sum_probs=26.4
Q ss_pred hHHhhhhccccchhhhHHHhhhhhHHHHHHh
Q 000199 767 NQLLESNLQDVTCENRHLTQKLSEWESLMMD 797 (1872)
Q Consensus 767 nq~lea~lq~~~~en~~l~~k~~e~e~~v~e 797 (1872)
|--||-++|.++-.|.-|++||.+-|.-++.
T Consensus 6 n~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~ 36 (280)
T PF14992_consen 6 NMDLEKDEQRLDEANQSLLQKIQEKEGAIQS 36 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999998887544
No 284
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.52 E-value=1e+03 Score=32.44 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=21.7
Q ss_pred cccchhhhhccccchhchhhhhhhhhhhcCCCcccccceeec
Q 000199 65 DPIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATI 106 (1872)
Q Consensus 65 dpiyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasi 106 (1872)
+|-+-.++-......+.+.+.+.+++-..+ -..+|.+..|
T Consensus 150 S~eL~~iR~~~~~~~~~i~~~l~~~~~~~~--~~~~L~d~~i 189 (782)
T PRK00409 150 SEKLRGIRRQLRRKKSRIREKLESIIRSKS--LQKYLQDTII 189 (782)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccceE
Confidence 344444444444455566667777766544 2355655554
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.50 E-value=1.9e+02 Score=32.69 Aligned_cols=78 Identities=24% Similarity=0.328 Sum_probs=42.4
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCChHHHhh
Q 000199 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWEAVKQ 388 (1872)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~eelkq 388 (1872)
...+++|+.++..+......+...++..+ .=..++-..+.+..++..|+.++..|+.|++.++.. +...++.+++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~----Dp~~i~~~~~ 142 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKELKKELEKYSEN----DPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 33455555555555444444444444442 222333445567788888888888888888744332 2223455555
Q ss_pred hhc
Q 000199 389 GTE 391 (1872)
Q Consensus 389 el~ 391 (1872)
++.
T Consensus 143 ~~~ 145 (188)
T PF03962_consen 143 EIK 145 (188)
T ss_pred HHH
Confidence 443
No 286
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.24 E-value=2.4e+02 Score=27.96 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHH
Q 000199 350 LAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 350 LsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
|-.+..+|..|+..|+.|.++||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555
No 287
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.11 E-value=1.5e+03 Score=28.19 Aligned_cols=242 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHH-Hhhhh
Q 000199 1106 SAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDEL-KSRAI 1183 (1872)
Q Consensus 1106 ~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q-~e~~lqeL~~eL~~~~~~~e~L-Qsk~~ 1183 (1872)
......+-++.+++-.|-......-...+.+..++-.++...+..+...-+ =+---+-|--.|+++-+..+.| +....
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhh
Q 000199 1184 DISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELK 1263 (1872)
Q Consensus 1184 Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE 1263 (1872)
+=+.+-|..+-+..+.-.+..+|...++ +-.-.-|++|..-|..++.+......--+.|-
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le--------------------~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr 162 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLE--------------------QEQEYLVNKLQKKIERLEKEKSAKQEELERLR 162 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred hHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh--------------------hhhccccchhhHHHHH
Q 000199 1264 NVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA--------------------SEESSSVTSLQSELSE 1323 (1872)
Q Consensus 1264 ~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~--------------------~~ktsef~~Ls~hLsE 1323 (1872)
..-.+|...|.--+..| +.+|.++...|+.++-.. ...+.....+.+|...
T Consensus 163 ~EKVdlEn~LE~EQE~l---------vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~ 233 (310)
T PF09755_consen 163 REKVDLENTLEQEQEAL---------VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRS 233 (310)
T ss_pred HHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHH
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHH
Q 000199 1324 MHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELD 1403 (1872)
Q Consensus 1324 lke~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELe 1403 (1872)
+++-+----=.+++...++-.+.+-..+- |.+.-++|.+|..+|.---...+
T Consensus 234 Lr~EV~RLR~qL~~sq~e~~~k~~~~~~e----------------------------ek~ireEN~rLqr~L~~E~erre 285 (310)
T PF09755_consen 234 LRQEVSRLRQQLAASQQEHSEKMAQYLQE----------------------------EKEIREENRRLQRKLQREVERRE 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 000199 1404 S 1404 (1872)
Q Consensus 1404 a 1404 (1872)
|
T Consensus 286 a 286 (310)
T PF09755_consen 286 A 286 (310)
T ss_pred H
No 288
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.04 E-value=1.7e+03 Score=28.83 Aligned_cols=122 Identities=21% Similarity=0.142 Sum_probs=76.6
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhh---------------hHHHHHHHHhHhH--HHhhh---hhc
Q 000199 1177 ELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTS---------------ENQALMVSLQEYA--EESSR---LAS 1236 (1872)
Q Consensus 1177 ~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~---------------en~a~mv~L~d~k--ee~aq---~a~ 1236 (1872)
++.-.-.+|+-+|...+..-..+.++.+.|..--+.|.- .-.++-..-+-|+ +.+.+ -|.
T Consensus 353 ~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~~~~~l~a~ 432 (542)
T KOG0993|consen 353 EISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTSLQQELDAS 432 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 344455677778888888877888888877776666510 0011111111111 22111 112
Q ss_pred c--ccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhH
Q 000199 1237 E--GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLE 1301 (1872)
Q Consensus 1237 e--~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLe 1301 (1872)
| -..|+..+++|.+.|+.++.++.+|+-+.-+-..+ +.--..+|-.-+.|+.+++.||--+-
T Consensus 433 ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~---c~~~~aS~~slk~e~erl~qq~eqi~ 496 (542)
T KOG0993|consen 433 EHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQ---CSNCDASFASLKVEPERLHQQCEQIF 496 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 25789999999999999999999999887665444 33345566666888899987755443
No 289
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.84 E-value=2e+03 Score=29.34 Aligned_cols=233 Identities=22% Similarity=0.206 Sum_probs=130.1
Q ss_pred HHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHH----HHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHh
Q 000199 1251 ELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELV----QLKLLVLDLESEKSRASEESSSVTSLQSELSEMHE 1326 (1872)
Q Consensus 1251 El~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~----~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke 1326 (1872)
+|+.-+-=+--|.-+|..|...|.|+..++.++..|.+.|. .+....++|+=.+-.+-+|++ .+..+|+..|.
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~---kme~qLkkAh~ 408 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECS---KMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34444333445566777888888999999988888887775 334455566555554445555 88899999886
Q ss_pred hhhh-------hhHHHH--HHHHHHHHHHHHHHHHHhhchhhHHHHHh-----hhc-------------cHHHHHhHhhh
Q 000199 1327 LLLA-------VDVRLI--FTRTQYEAWVEELVQQVYSTDRLLTELHT-----KNV-------------DVETVLNSCLA 1379 (1872)
Q Consensus 1327 ~l~A-------~dvrii--F~KeQYEtkvqEL~qQL~~Skk~~eElq~-----K~q-------------Daedeln~~lk 1379 (1872)
-+.- +|.+=- -..++|+. +-...++--+-+.++++ |+- |--+-.-+-+-
T Consensus 409 ~~ddar~~pe~~d~i~~le~e~~~y~d----e~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkH 484 (654)
T KOG4809|consen 409 IEDDARMNPEFADQIKQLEKEASYYRD----ECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKH 484 (654)
T ss_pred hhHhhhcChhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHH
Confidence 5544 233222 22344442 11222222222222221 111 11111122233
Q ss_pred hhhHHHHHhHHHHHhHHHHHHHHHHHHHH--hHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhh--HHHHHHHHHhh
Q 000199 1380 REAQCNEENARLLTSLDTLRSELDSAIAE--NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQL--ALEVERMKQLL 1455 (1872)
Q Consensus 1380 sEa~~~keNaeLl~~I~eLesELeasiae--kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~--a~Eve~lK~LL 1455 (1872)
.+.--.++|++++..|--=+--+.+...- -|+++++-+..+.|+++-|-|+..+-+...|.. +| ..=+++.|+|+
T Consensus 485 k~q~Ekkk~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke-~HL~nLr~errk~Le 563 (654)
T KOG4809|consen 485 KQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKE-AHLANLRIERRKQLE 563 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45556677888776654322222211111 689999999999999999999988888877763 33 22334444443
Q ss_pred hccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHH
Q 000199 1456 VGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQ 1517 (1872)
Q Consensus 1456 ~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qklseq 1517 (1872)
.-+++ | ++.+ --.+..|+.......-+++-.|++.-
T Consensus 564 e~lem--------------K------~~a~------k~~i~~d~~~~~~~~~~~~~~k~~~e 599 (654)
T KOG4809|consen 564 EILEM--------------K------KPAW------KPGIHADMWRETHKPSNETVTKGSTE 599 (654)
T ss_pred HHHHh--------------h------hhhh------hcCCCHHHHHHHhhhhhhHHHhhHHH
Confidence 32221 1 1111 13667777777777777777776653
No 290
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.80 E-value=2.8e+02 Score=29.39 Aligned_cols=44 Identities=34% Similarity=0.487 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHH
Q 000199 1004 LDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTE 1047 (1872)
Q Consensus 1004 l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~ 1047 (1872)
|.++-.+++.+...=..|.+.|..|.+...|+..++.++..|..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556667777777778888888899999999999999888875
No 291
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.69 E-value=5.3e+02 Score=31.65 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred hhhhhhhchhhH-------HHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000199 301 LRGCLEMAESSI-------HELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIK 373 (1872)
Q Consensus 301 ~R~~Le~AEdsI-------EkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1872)
+|..|-..|+.+ -.|-.|-.+|.=+.|.+.-.|..+-..++-=-+--.+..+++--+|..+|.|+.|+..||.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666633 3467777888888888888777666655533333346677777788888888888777776
Q ss_pred hhhcCCCCChHHHhhhhcc
Q 000199 374 LRSCHPFTSWEAVKQGTEI 392 (1872)
Q Consensus 374 ~kk~~~~a~~eelkqel~~ 392 (1872)
.-+. -.+|-++-|+
T Consensus 162 ~L~~-----rdeli~khGl 175 (302)
T PF09738_consen 162 QLKQ-----RDELIEKHGL 175 (302)
T ss_pred HHHH-----HHHHHHHCCe
Confidence 5432 1344455554
No 292
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.43 E-value=2.2e+03 Score=29.86 Aligned_cols=188 Identities=21% Similarity=0.237 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhhhccchHHHHhHhhhhhccccchh--------------HHHHHHHHhhhccHHHHHHHHhhhhHHhhhh
Q 000199 971 KLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLD--------------YLEVELQQLSSKNRDLAQEILALQVVTEEFD 1036 (1872)
Q Consensus 971 klq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~--------------~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~ 1036 (1872)
-|--+++.+..++.+-.|++ .|-++|+--+|.|. .|+.+.++..+.-+-+-+.+.+|..|+.
T Consensus 890 ~L~dRveE~~E~L~~a~e~~-~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~q--- 965 (1480)
T COG3096 890 SLADRVEEIRERLDEAQEAA-RFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQ--- 965 (1480)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45567788888888877764 57777887777654 4455555555555555666666665554
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHh-hhhHHHHHhHhhhhhhhhhhhhhhh
Q 000199 1037 RSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL-RDDLKSAVSDITSQLSAKHSQLLDF 1115 (1872)
Q Consensus 1037 ~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl-~edl~~~vsdLaSEL~eK~~sL~sf 1115 (1872)
-++-.. -+.|..+..|-..|-+-|+--.+...++|.- ++.+.+.-++ .++-|-..-+|++.
T Consensus 966 ------------Rr~HF~-----Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q-~sqYnqvl~~LksS 1027 (1480)
T COG3096 966 ------------RRAHFS-----YSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQ-LSQYNQVLASLKSS 1027 (1480)
T ss_pred ------------hhcccc-----cchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 111111 2456666666666666666656666666643 3444433332 23334333344443
Q ss_pred hHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHH
Q 000199 1116 DQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEK 1192 (1872)
Q Consensus 1116 d~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~ 1192 (1872)
.+-|-++++...-.+-+-.-++-+ -|-+.. +.-=.+||.+|+..++-+.++-+.-+=.++.|...
T Consensus 1028 ~~~K~~~l~El~qEl~d~GV~AD~----------gAeeRA--~~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L 1092 (1480)
T COG3096 1028 YDTKKELLNELQQELQDIGVRADS----------GAEERA--RIRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNL 1092 (1480)
T ss_pred hhHHHHHHHHHHHHHHHhCCCcCc----------chHHHH--HHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHH
Confidence 333333322221111110000000 001111 12234899999999988888877766666555443
No 293
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=1.9e+03 Score=29.12 Aligned_cols=195 Identities=19% Similarity=0.181 Sum_probs=101.9
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhh---hHHhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 000199 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ---VVTEEFDRSKQTISELTEENRALMVALQDK 1059 (1872)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~---~v~~E~~~tK~~~~el~~En~al~~slqdk 1059 (1872)
.++.-|+--+|.++--.+-+.--++-.-|+.++-+|+-|+.|=...+ ...-|+-+--.+.-....|..|..-.+|-
T Consensus 48 ~~~~~e~~~N~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK~~~~m~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q- 126 (613)
T KOG0992|consen 48 DDVGGEGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQKEKTRVDMTNEILLESVRKAQTQKDIKCEEEAKIKNLQQ- 126 (613)
T ss_pred hhhhccccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444555555555555555555566667777777777766542221 22233334444444555555555555542
Q ss_pred hhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhh---hhhhhhhh----------HhhHHHHHHH
Q 000199 1060 SEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAK---HSQLLDFD----------QQKSELIQKT 1126 (1872)
Q Consensus 1060 ~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK---~~sL~sfd----------~enqeLl~~~ 1126 (1872)
-+++.|+.+++-+-.|.---+.++..-+..+.+|-++|... .+.+..+. ++--.++...
T Consensus 127 --------~~~d~l~~~~~fle~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~ 198 (613)
T KOG0992|consen 127 --------IEIDKLKNLLSFLEQEKVDREGLMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTT 198 (613)
T ss_pred --------HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 25677777777664444333444444445555555555431 22222222 1222235555
Q ss_pred HhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhH
Q 000199 1127 AVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDIS 1186 (1872)
Q Consensus 1127 ~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dve 1186 (1872)
....++++.+-.+.+.+.+..+.-+|+...-+--++.+..+=.-+.-+.+.++-.+.+|+
T Consensus 199 ~a~~e~~nrh~~erlk~~~~s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~Ve 258 (613)
T KOG0992|consen 199 LAAVEEENRHLKERLKIVEESRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVE 258 (613)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567778888777777777766655554444333344444443334444555555555555
No 294
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=22.19 E-value=52 Score=34.35 Aligned_cols=68 Identities=25% Similarity=0.499 Sum_probs=37.9
Q ss_pred EEEeecCCCccccccccccccCCcccCCcccchhh-hhccccchhchhhhhhhhhh-hcC-CCcccccceeecchhhcc
Q 000199 37 ISFIPADSGKAIGKTTKANVRNGTCKWADPIYETT-RLLQDIKTKQYDEKLYKFVV-AMG-SSRSSILGEATINLADYA 112 (1872)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtv-kl~qD~kt~~~~ekiYkfVV-s~G-SsksgiLGEasinlAdY~ 112 (1872)
|++.|... +.. ..|+.|..++| +|+|.-+ .|. ..-.+.+.+...|-| ..| .++..+||++.|.|+++.
T Consensus 43 v~llp~~~-~~~--k~kT~v~~~t~---nPvfNE~F~f~--v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 43 VCLLPDKS-HNS--KRKTAVKKGTV---NPVFNETLKYV--VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred EEEEeCCc-ccc--eeecccccCCC---CCccceEEEEE--cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 34556542 221 23555777776 4444322 221 222334454455555 344 368889999999999983
No 295
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.83 E-value=1.7e+03 Score=28.13 Aligned_cols=203 Identities=20% Similarity=0.208 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHH-HhHHHHHhHHHHHHHHHHHHHH-
Q 000199 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNE-ENARLLTSLDTLRSELDSAIAE- 1408 (1872)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~k-eNaeLl~~I~eLesELeasiae- 1408 (1872)
..+...|...+-+....-.+........-+.++..+.+.++..+........-... +..-+..... ++++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~---~~ln~ql~~~ 251 (458)
T COG3206 175 NALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQL---SALNTQLQSA 251 (458)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHH---HHHHHHHHHH
Confidence 55567778888888888888888888888888888888888888777665543331 2222211111 111111111
Q ss_pred hHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhH
Q 000199 1409 NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHA 1488 (1872)
Q Consensus 1409 kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~ 1488 (1872)
.+....++.........-..-.......+.- -++-+..|+.-..+..-+|.++...=.+.--..+.+++.+.+.+.
T Consensus 252 ~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~----~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~ 327 (458)
T COG3206 252 RARLAQAEARLASLLQLLPLGREAAALREVL----ESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQ 327 (458)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHh----ccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHH
Confidence 1111111111110000000000000111111 112344444444555555555554444444555566666666555
Q ss_pred HHhc-----cccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhH
Q 000199 1489 QVIS-----SEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADA 1540 (1872)
Q Consensus 1489 ~i~~-----~~~~~~el~~l~~~~~el~qklseqilkteefknlsihlkelkdkaea 1540 (1872)
+|.. +..+..++..++.+.+.|.++++.=--.-..+-..-.-+.+|.-.|++
T Consensus 328 ~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~ 384 (458)
T COG3206 328 QIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEA 384 (458)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHH
Confidence 5432 244555566677777777776665544445555566666666666665
No 296
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=21.83 E-value=6.8e+02 Score=29.42 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHh
Q 000199 901 VIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVA 980 (1872)
Q Consensus 901 v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~ 980 (1872)
++..++.+-++..+-.-.|-++......+-+.+......+-.+....++||+ ....+.++|.+-++|.+..++...
T Consensus 99 l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e----~a~~~~~~~~~~~eKak~k~~~~~ 174 (237)
T cd07657 99 LIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFE----EAVVKGGRGGRKLDKARDKYQKAC 174 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcccchhhHHHHHHHHHHHH
Confidence 3344444444444444455555555556666666666666666666666663 334445678889999999887777
Q ss_pred hhhcc
Q 000199 981 DKLKV 985 (1872)
Q Consensus 981 ~k~k~ 985 (1872)
.++..
T Consensus 175 ~k~~~ 179 (237)
T cd07657 175 RKLHL 179 (237)
T ss_pred HHHHH
Confidence 76654
No 297
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.71 E-value=3.4e+02 Score=31.08 Aligned_cols=70 Identities=27% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 303 GCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 303 ~~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
+.....+..|++-.++...++.....++..+-.|+.+...=-+--+.-.+||+.++.++++++++|+..+
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 298
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.65 E-value=7.7e+02 Score=32.06 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=5.2
Q ss_pred HHHHHHhHHHH
Q 000199 1501 KMLQNQCNELR 1511 (1872)
Q Consensus 1501 ~~l~~~~~el~ 1511 (1872)
.-|++|.++|.
T Consensus 438 ~dLqEQlrDlm 448 (493)
T KOG0804|consen 438 TDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHhHh
Confidence 33455555444
No 299
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=21.57 E-value=1.5e+02 Score=31.27 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCcccCCcccchhhhhccccc-------hhchhhhhhhhhh-hc-CCCcccccceeecchhhcccccCCeeeeecCCCC
Q 000199 58 NGTCKWADPIYETTRLLQDIK-------TKQYDEKLYKFVV-AM-GSSRSSILGEATINLADYADASKPSTVLLPLHGG 127 (1872)
Q Consensus 58 ~G~C~W~dpiyEtvkl~qD~k-------t~~~~ekiYkfVV-s~-GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~c 127 (1872)
+-...|...++=.+....+.+ +..+......|.| .- +..+..++|++.|.+.+... ..+...-+||...
T Consensus 44 t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 44 TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 335567665554444432211 1122333444444 22 33589999999999999874 4566777788544
No 300
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=21.37 E-value=61 Score=33.05 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=40.6
Q ss_pred CccccccccccccCCcccCCcccchhhhhccccchhchhhhhhhhhh-h---cCCCcccccceeecchhhcccccCCeee
Q 000199 45 GKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-A---MGSSRSSILGEATINLADYADASKPSTV 120 (1872)
Q Consensus 45 GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s---~GSsksgiLGEasinlAdY~~a~kp~~V 120 (1872)
|....||. ..-.+-+..|..+++=.+. + . ....|-| . +|.....+||.+.|++.+......+..-
T Consensus 31 ~~~~~kT~-v~~~t~nP~Wne~f~~~~~----~-~-----~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 99 (123)
T cd08382 31 GGQTHSTD-VAKKTLDPKWNEHFDLTVG----P-S-----SIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQ 99 (123)
T ss_pred CccceEcc-EEcCCCCCcccceEEEEeC----C-C-----CEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccc
Confidence 45555553 2223446778776654442 1 1 2233333 2 2332357999999999999877666555
Q ss_pred eecCC
Q 000199 121 LLPLH 125 (1872)
Q Consensus 121 SLPLk 125 (1872)
.+||+
T Consensus 100 ~~~l~ 104 (123)
T cd08382 100 RLDLR 104 (123)
T ss_pred eeEee
Confidence 67773
No 301
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.50 E-value=1.1e+03 Score=32.24 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=30.5
Q ss_pred ccchhhhhccccchhchhhhhhhhhhhcCCCcccccceeecchhhcccccCCeeeeecCCCC
Q 000199 66 PIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATINLADYADASKPSTVLLPLHGG 127 (1872)
Q Consensus 66 piyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~c 127 (1872)
|-+-.++---....+.+.+++.+++-..| ..++|++..|.+-+. ...+|++..
T Consensus 146 ~~L~~ir~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~it~r~~-------r~vipvk~~ 198 (771)
T TIGR01069 146 EELDAIRESLKALEEEVVKRLHKIIRSKE--LAKYLSDTIVTIRNG-------RYVLPLKSG 198 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhhcCceEEEECC-------EEEEEeeHH
Confidence 44444444444556677788888877665 346777744443321 345777653
No 302
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.44 E-value=2.2e+03 Score=29.11 Aligned_cols=212 Identities=25% Similarity=0.281 Sum_probs=104.2
Q ss_pred chHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHHhh------hhhhhHHHHHH---H-----HHHHHHHHHHHHH
Q 000199 1287 KSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHEL------LLAVDVRLIFT---R-----TQYEAWVEELVQQ 1352 (1872)
Q Consensus 1287 ~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElke~------l~A~dvriiF~---K-----eQYEtkvqEL~qQ 1352 (1872)
+.+...++.++..++...+.++-.- ..-..+|..++.. +.++-|-+|.+ . .+-|..++.|.+|
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~---~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAI---EDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666443111 1334445555533 22233333321 1 2457888899999
Q ss_pred HhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHH-------HHHHhHHhhhhhhhhhhhhhh
Q 000199 1353 VYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDS-------AIAENRVLFHENNSLIAQSEE 1425 (1872)
Q Consensus 1353 L~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELea-------siaekR~L~nand~~~AElEE 1425 (1872)
+.. .+|....- ..|-++.++--+-. --.+|++|.+.|..+++-+.- .|+..-...++++ .++|+
T Consensus 265 l~~-~N~~~~~~--~~~~i~~~~~~L~~---kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~---~~lee 335 (629)
T KOG0963|consen 265 LAK-ANSSKKLA--KIDDIDALGSVLNQ---KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKI---SELEE 335 (629)
T ss_pred HHh-hhhhhhhc--cCCchHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 853 33433322 33333333332222 455677777777766654433 3333333444444 55666
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhc-cHHHHhh-hhhhhhhHHHHHHHHHHHHHhhhHHHhcc-ccchhHHHH
Q 000199 1426 YKSRAETMADNYGEHKSQLALEVERMKQLLVG-SEEEIDD-LMMSREELEIKVVVLKAKLAEQHAQVISS-EGYIDEQKM 1502 (1872)
Q Consensus 1426 ~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~-~eeeid~-l~~~k~e~ei~~~vlk~kl~e~~~~i~~~-~~~~~el~~ 1502 (1872)
-+.++++. -+| -.|..||--||.+=++ +++--|+ =+.+. +|...+-=..+|...-|+.-+- -+-.++++.
T Consensus 336 l~~kL~~~-sDY----eeIK~ELsiLk~ief~~se~a~~~~~~~~~--leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~ 408 (629)
T KOG0963|consen 336 LKEKLNSR-SDY----EEIKKELSILKAIEFGDSEEANDEDETAKT--LESLLLEKNRKLQNENASLRVANSGLSGRITE 408 (629)
T ss_pred HHHHHhhh-ccH----HHHHHHHHHHHHhhcCCcccccccccccch--HHHHHHHHHhhhhHHHHHHhccccccchhHHH
Confidence 55555544 223 4577888999999998 4443333 11111 1111111122333332222111 222336677
Q ss_pred HHHHhHHHHHHHHHH
Q 000199 1503 LQNQCNELRRKLSEQ 1517 (1872)
Q Consensus 1503 l~~~~~el~qklseq 1517 (1872)
++..-.+++++-++|
T Consensus 409 ~~~~~~el~~~~~~~ 423 (629)
T KOG0963|consen 409 LSKKGEELEAKATEQ 423 (629)
T ss_pred HHhhhhhhHHHHHHH
Confidence 777777777766655
No 303
>PRK10869 recombination and repair protein; Provisional
Probab=20.25 E-value=2e+03 Score=28.53 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=46.9
Q ss_pred HhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHH
Q 000199 952 EHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEI 1025 (1872)
Q Consensus 952 e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i 1025 (1872)
..+++...+.+++.++-++.++.++..| .-..-||-..-.+++...+.++.+|+.+..-..++..--
T Consensus 281 ~~~l~~~~~~~~~dp~~l~~ie~Rl~~l-------~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le 347 (553)
T PRK10869 281 SDELRHYLDRLDLDPNRLAELEQRLSKQ-------ISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLA 347 (553)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4567777788899998888877666544 345667776667788888888888888776555444333
No 304
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=20.05 E-value=50 Score=22.35 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 000199 276 DWVPGWGLD 284 (1872)
Q Consensus 276 eWs~g~s~d 284 (1872)
-||+||-|+
T Consensus 2 HwS~~w~PG 10 (10)
T PF00446_consen 2 HWSHGWKPG 10 (10)
T ss_pred ccccccCCC
Confidence 499999885
Done!