Query 000199
Match_columns 1872
No_of_seqs 65 out of 67
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 00:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.6 0.071 2.4E-06 55.0 29.6 10 1006-1015 10-19 (284)
2 1i84_S Smooth muscle myosin he 97.4 0.00024 8.1E-09 92.4 8.9 60 1059-1118 911-970 (1184)
3 1i84_S Smooth muscle myosin he 97.2 0.00057 2E-08 88.9 10.3 16 900-915 778-793 (1184)
4 3ol1_A Vimentin; structural ge 88.7 7.9 0.00027 39.1 14.2 97 459-555 16-115 (119)
5 3na7_A HP0958; flagellar bioge 87.6 13 0.00044 41.2 16.3 57 1437-1493 88-144 (256)
6 3swk_A Vimentin; cytoskeleton, 85.6 5.4 0.00019 38.5 10.5 76 465-540 2-80 (86)
7 3na7_A HP0958; flagellar bioge 82.3 36 0.0012 37.7 16.8 53 456-508 32-84 (256)
8 3ol1_A Vimentin; structural ge 81.7 4.3 0.00015 40.9 8.5 83 1393-1486 20-102 (119)
9 2dfs_A Myosin-5A; myosin-V, in 79.2 12 0.00042 49.3 13.6 13 731-743 519-531 (1080)
10 3tnu_A Keratin, type I cytoske 79.0 18 0.00063 36.7 12.0 73 455-548 37-109 (131)
11 3o0z_A RHO-associated protein 79.0 24 0.00082 38.1 13.3 110 1032-1141 26-142 (168)
12 2v71_A Nuclear distribution pr 78.9 65 0.0022 35.3 16.8 164 1247-1442 7-171 (189)
13 3tnu_B Keratin, type II cytosk 77.7 19 0.00066 36.4 11.7 71 457-548 37-107 (129)
14 3s4r_A Vimentin; alpha-helix, 77.4 2.6 9E-05 41.1 5.2 84 745-847 10-93 (93)
15 3o0z_A RHO-associated protein 75.1 64 0.0022 34.9 15.2 91 1418-1508 62-153 (168)
16 3swk_A Vimentin; cytoskeleton, 74.7 7.7 0.00026 37.4 7.5 81 1395-1486 2-82 (86)
17 2dfs_A Myosin-5A; myosin-V, in 72.3 1.2E+02 0.004 40.4 19.8 53 993-1045 919-972 (1080)
18 2v71_A Nuclear distribution pr 72.0 1.2E+02 0.0042 33.3 17.4 59 522-584 87-145 (189)
19 3vkg_A Dynein heavy chain, cyt 70.0 73 0.0025 46.8 18.3 72 1071-1142 2010-2084(3245)
20 2ocy_A RAB guanine nucleotide 69.8 57 0.0019 34.8 13.2 118 1006-1123 17-142 (154)
21 1gk4_A Vimentin; intermediate 62.9 55 0.0019 31.2 10.5 59 471-550 2-60 (84)
22 1go4_E MAD1 (mitotic arrest de 61.3 24 0.00081 35.4 7.9 38 456-493 12-51 (100)
23 2v4h_A NF-kappa-B essential mo 57.9 1.1E+02 0.0036 31.4 11.9 52 471-537 25-76 (110)
24 2fxo_A Myosin heavy chain, car 57.7 1.7E+02 0.0057 29.8 13.7 111 1384-1515 11-121 (129)
25 2v66_B Nuclear distribution pr 57.3 1.2E+02 0.0042 30.9 12.4 86 481-584 7-92 (111)
26 3ghg_A Fibrinogen alpha chain; 55.4 31 0.0011 42.6 9.1 101 1094-1197 62-166 (562)
27 2efr_A General control protein 55.2 1.4E+02 0.0049 31.8 13.1 65 951-1015 26-90 (155)
28 1ugk_A Synaptotagmin IV, KIAA1 54.6 29 0.00098 33.8 7.3 34 95-128 102-135 (138)
29 3hnw_A Uncharacterized protein 53.5 87 0.003 32.6 10.9 44 459-502 78-121 (138)
30 3ghg_A Fibrinogen alpha chain; 53.4 29 0.00098 42.9 8.4 125 781-908 59-188 (562)
31 2ocy_A RAB guanine nucleotide 52.0 97 0.0033 33.1 11.1 51 1234-1286 49-99 (154)
32 3s84_A Apolipoprotein A-IV; fo 50.4 3.3E+02 0.011 31.0 20.4 38 1419-1459 214-251 (273)
33 2fxo_A Myosin heavy chain, car 48.8 1.8E+02 0.0061 29.6 12.2 29 1248-1276 95-123 (129)
34 3i00_A HIP-I, huntingtin-inter 47.9 42 0.0014 34.4 7.4 58 311-372 16-74 (120)
35 3oja_B Anopheles plasmodium-re 46.7 89 0.003 37.4 11.2 50 1037-1086 513-562 (597)
36 1rlw_A Phospholipase A2, CALB 44.6 33 0.0011 32.6 5.9 42 97-140 83-124 (126)
37 2w83_C C-JUN-amino-terminal ki 43.5 26 0.00088 33.8 4.8 26 477-502 30-55 (77)
38 3tnu_A Keratin, type I cytoske 42.7 36 0.0012 34.6 6.1 77 1233-1328 35-111 (131)
39 2e7s_A RAB guanine nucleotide 41.9 29 0.00098 36.4 5.2 63 1061-1123 67-130 (135)
40 1wfj_A Putative elicitor-respo 40.3 14 0.00048 35.7 2.6 47 96-142 84-131 (136)
41 3tnu_B Keratin, type II cytosk 39.5 1.7E+02 0.0059 29.5 10.4 107 1340-1456 11-127 (129)
42 3csx_A Putative uncharacterize 39.1 30 0.001 33.7 4.5 65 309-373 14-78 (81)
43 1x8y_A Lamin A/C; structural p 37.9 85 0.0029 30.2 7.5 60 470-550 3-62 (86)
44 2d8k_A Synaptotagmin VII; exoc 37.7 45 0.0015 32.5 5.8 34 96-130 106-139 (141)
45 3oja_A Leucine-rich immune mol 36.8 2.7E+02 0.0093 32.7 13.1 56 529-584 423-478 (487)
46 2v66_B Nuclear distribution pr 36.6 72 0.0025 32.5 7.0 76 792-877 13-88 (111)
47 3b7y_A E3 ubiquitin-protein li 36.4 42 0.0014 33.1 5.4 45 96-140 99-152 (153)
48 3nmd_A CGMP dependent protein 35.8 74 0.0025 30.4 6.5 47 699-749 23-69 (72)
49 3vkg_A Dynein heavy chain, cyt 35.6 7.8E+02 0.027 36.9 19.3 30 1097-1126 1661-1699(3245)
50 1l8d_A DNA double-strand break 34.8 2.3E+02 0.0078 27.4 10.1 10 517-526 49-58 (112)
51 2jee_A YIIU; FTSZ, septum, coi 34.7 1.1E+02 0.0037 29.9 7.5 28 349-376 38-65 (81)
52 3oja_A Leucine-rich immune mol 34.2 1.1E+02 0.0037 36.1 9.1 81 918-998 364-452 (487)
53 3fbk_A RGS3, RGP3, regulator o 34.1 33 0.0011 34.2 4.2 41 98-138 109-149 (153)
54 2js5_A Uncharacterized protein 32.5 55 0.0019 31.2 5.1 63 310-372 3-65 (71)
55 2eqb_B RAB guanine nucleotide 31.7 2.1E+02 0.0072 28.7 9.2 26 1252-1277 71-96 (97)
56 3hnw_A Uncharacterized protein 31.6 1.3E+02 0.0044 31.3 8.1 63 310-372 68-130 (138)
57 2dmh_A Myoferlin; beta-sandwic 31.0 67 0.0023 31.1 5.7 47 96-142 83-134 (140)
58 2e62_A Protein AT5G25060; CWF2 30.5 52 0.0018 30.6 4.4 39 1468-1515 17-55 (61)
59 3pyc_A E3 ubiquitin-protein li 30.5 51 0.0017 31.8 4.7 41 98-138 84-130 (132)
60 3m9b_A Proteasome-associated A 29.8 58 0.002 37.1 5.6 66 311-377 25-100 (251)
61 3m7f_B E3 ubiquitin-protein li 29.1 71 0.0024 32.5 5.8 47 96-142 87-142 (176)
62 3i00_A HIP-I, huntingtin-inter 29.1 83 0.0029 32.2 6.1 95 1239-1343 18-116 (120)
63 4emc_A Monopolin complex subun 27.4 1.5E+02 0.0052 32.6 8.1 55 1033-1087 13-67 (190)
64 3trt_A Vimentin; cytoskeleton, 27.2 3E+02 0.01 25.4 9.0 65 1335-1405 11-75 (77)
65 1ci6_A Transcription factor AT 26.8 1.5E+02 0.005 27.1 6.7 40 462-501 22-61 (63)
66 2w83_C C-JUN-amino-terminal ki 26.2 1.5E+02 0.005 28.8 6.8 63 1197-1273 12-74 (77)
67 3mov_A Lamin-B1; LMNB1, B-type 25.7 1.5E+02 0.005 29.3 6.9 60 471-551 13-72 (95)
68 1go4_E MAD1 (mitotic arrest de 25.3 1.6E+02 0.0055 29.6 7.2 25 356-380 72-96 (100)
69 3vp9_A General transcriptional 25.0 1.8E+02 0.0062 28.9 7.4 74 1272-1358 11-89 (92)
70 4etp_A Kinesin-like protein KA 24.9 1.3E+02 0.0043 35.8 7.6 38 464-501 4-41 (403)
71 2ep6_A MCTP2 protein; beta san 24.3 83 0.0028 30.3 5.0 42 96-140 86-131 (133)
72 3s4r_A Vimentin; alpha-helix, 23.3 2.1E+02 0.0073 27.9 7.6 30 1199-1228 11-43 (93)
73 1a93_B MAX protein, coiled coi 23.3 77 0.0026 26.7 3.7 32 459-490 3-34 (34)
74 2jee_A YIIU; FTSZ, septum, coi 23.2 4.5E+02 0.015 25.7 9.5 66 459-528 9-74 (81)
75 2chd_A Rabphilin-3A, exophilin 22.9 1.1E+02 0.0039 29.7 5.7 30 96-126 111-140 (142)
76 3q8t_A Beclin-1; autophagy, AT 22.9 3.4E+02 0.012 26.6 8.9 29 1152-1180 67-95 (96)
77 1uii_A Geminin; human, DNA rep 22.4 1.5E+02 0.005 29.2 6.0 36 691-726 28-63 (83)
78 2no2_A HIP-I, huntingtin-inter 22.2 6.1E+02 0.021 25.5 13.3 91 464-554 9-102 (107)
79 3q8t_A Beclin-1; autophagy, AT 21.6 4.5E+02 0.016 25.8 9.5 75 1048-1122 5-79 (96)
80 4fla_A Regulation of nuclear P 21.6 2.2E+02 0.0076 30.1 7.8 75 784-864 73-147 (152)
81 1v27_A Regulating synaptic mem 21.5 1.3E+02 0.0046 28.8 5.8 33 97-131 106-138 (141)
82 2e7s_A RAB guanine nucleotide 21.3 1.5E+02 0.0053 31.1 6.5 35 1246-1280 49-83 (135)
83 3bas_A Myosin heavy chain, str 20.5 2.7E+02 0.0093 26.8 7.6 44 1236-1279 14-57 (89)
84 1t2k_D Cyclic-AMP-dependent tr 20.4 2.1E+02 0.0072 25.7 6.4 37 463-499 22-58 (61)
85 1dqv_A Synaptotagmin III; beta 20.2 3E+02 0.01 30.3 8.9 47 95-141 98-149 (296)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.64 E-value=0.071 Score=55.01 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=3.8
Q ss_pred HHHHHHHHhh
Q 000199 1006 YLEVELQQLS 1015 (1872)
Q Consensus 1006 ~~e~elq~l~ 1015 (1872)
.|..++..+.
T Consensus 10 ~l~~~~~~~~ 19 (284)
T 1c1g_A 10 MLKLDKENAL 19 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 3333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.38 E-value=0.00024 Score=92.38 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHh
Q 000199 1059 KSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1872)
Q Consensus 1059 k~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1872)
..+.-..+..++..+...+..+..++..+......+......+..++......+.....+
T Consensus 911 ~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~ 970 (1184)
T 1i84_S 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555544444444444444444444444444444333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.25 E-value=0.00057 Score=88.89 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 000199 900 SVIMRLEVLQRNACQK 915 (1872)
Q Consensus 900 ~v~~~le~~q~~~c~k 915 (1872)
|++..||.+......+
T Consensus 778 g~l~~LE~~r~~~l~~ 793 (1184)
T 1i84_S 778 GVLAHLEEERDLKITD 793 (1184)
T ss_dssp THHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777888765443333
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.73 E-value=7.9 Score=39.06 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=78.9
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH-HHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE--NQRHML-GELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ--~q~q~~-~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1872)
...+.-|.+|-+.|+....+|-.|+.+++-+....+.|+.+.|. +.++.. +++..|++.--....+-.+|+++|++|
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999997654 222222 456678888777778888999999999
Q ss_pred HHHHHHHHHHHhhhHhHHHh
Q 000199 536 RLDVDEQVLRFSEERRDLES 555 (1872)
Q Consensus 536 eeel~~Q~~rF~eDl~a~~~ 555 (1872)
.+|+.=--.-|++++..|.+
T Consensus 96 ~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 96 QEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998777777777776654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.59 E-value=13 Score=41.24 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=45.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhcc
Q 000199 1437 YGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISS 1493 (1872)
Q Consensus 1437 ~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~ 1493 (1872)
-+.+-.-+..|++.++.-...+|++|-.++--.++++-.+-.+++.+++.++.+...
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447788899999999999999999998888888777777777777777777665
No 6
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.57 E-value=5.4 Score=38.46 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH-HHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHH
Q 000199 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEE--NQRHML-GELQNLRNEHSSCLYTVSSAKAEIEAMRLDVD 540 (1872)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ--~q~q~~-~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~ 540 (1872)
|-+|-+.|+....++-.|+-+++.|...-+.++.+.|. +.++.. +++..|++.--.+-.+-.+|+++|++|.+|+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888999999999999999999999997554 344333 56777998888888888999999999999874
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.30 E-value=36 Score=37.69 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=40.9
Q ss_pred CcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000199 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML 508 (1872)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~ 508 (1872)
.+...++..+..+...|...+.+.+++..++.+++.+.+.+.+.++.++.+.-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888887777766543
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.72 E-value=4.3 Score=40.93 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred HhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhH
Q 000199 1393 TSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREEL 1472 (1872)
Q Consensus 1393 ~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ 1472 (1872)
.-|..|+..+..+..+|--+.-.-+-+...++++|.|.++....+ .. +..=++++...+|+.+++|.++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r----~~-------~E~di~~lrK~lD~~~l~r~dL 88 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR----EE-------AENTLQSFRQDVDNASLARLDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HH-------HHHHHHHhhhcccHHHHHHHHH
Confidence 457777888888888887777777888888899998877644221 11 2233556667789999999999
Q ss_pred HHHHHHHHHHHHhh
Q 000199 1473 EIKVVVLKAKLAEQ 1486 (1872)
Q Consensus 1473 ei~~~vlk~kl~e~ 1486 (1872)
|.++--|+..|.=+
T Consensus 89 E~~iesL~eEl~FL 102 (119)
T 3ol1_A 89 ERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888877665543
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.21 E-value=12 Score=49.29 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHh
Q 000199 731 SNELLMQRLQTAM 743 (1872)
Q Consensus 731 ~~~~l~~~l~~a~ 743 (1872)
+-..++.||....
T Consensus 519 tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 519 SDDTWAQKLYNTH 531 (1080)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 3455666666554
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.99 E-value=18 Score=36.73 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=58.4
Q ss_pred CCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHH
Q 000199 455 VNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEA 534 (1872)
Q Consensus 455 a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~ 534 (1872)
-.+...|+..|-.|-.||+..+..+..|+..+..++.-|+.-...+. .+|..|++++..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q---------------------~~i~~lE~eL~~ 95 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQ---------------------EMIGSVEEQLAQ 95 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Confidence 34678899999999999999999999999999999998875332221 267889999999
Q ss_pred HHHHHHHHHHHHhh
Q 000199 535 MRLDVDEQVLRFSE 548 (1872)
Q Consensus 535 Leeel~~Q~~rF~e 548 (1872)
+..+|..|...|.+
T Consensus 96 ~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 96 LRCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988863
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.97 E-value=24 Score=38.10 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=91.7
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhh-------hhHHHHHhHhhhh
Q 000199 1032 TEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR-------DDLKSAVSDITSQ 1104 (1872)
Q Consensus 1032 ~~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~-------edl~~~vsdLaSE 1104 (1872)
++-..|+|-..+|+..-.+.+-....|=.+--..+-..-.+|.+-+..|+..|-.||+.+ -+++.++..|..+
T Consensus 26 sE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 26 SDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457777778888877777777776666677777888889999999999999999776 5788899999999
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhh
Q 000199 1105 LSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQ 1141 (1872)
Q Consensus 1105 L~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Ll 1141 (1872)
+...+..+...-.+|..|-.++.+...+.+++.++|+
T Consensus 106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~ 142 (168)
T 3o0z_A 106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999887754
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.87 E-value=65 Score=35.34 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=75.7
Q ss_pred HHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcc-cccchHHHHHHHHHhhhHhhhhhhhhhccccchhhHHHHHHH
Q 000199 1247 SLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1872)
Q Consensus 1247 Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~-d~~~~EL~~Lk~qvsdLese~S~~~~ktsef~~Ls~hLsElk 1325 (1872)
|..+|+.=-+.+=+.....+.++...|+|-+.-=-.+ ..-..+|..+.+++.+|.+++.+...+.. ..+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e----------~~k 76 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVE----------ALK 76 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 3444444444444444444455555555433221111 12234556666677777666664433333 333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHH
Q 000199 1326 ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSA 1405 (1872)
Q Consensus 1326 e~l~A~dvriiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeas 1405 (1872)
.++. -.+.+.-+-+..|..++.....--..+++++.|.+-.++..=.++.. ...++.-+++-+..+
T Consensus 77 ~K~~-------~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~-------~~~SleD~e~kln~a 142 (189)
T 2v71_A 77 EKLE-------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA-------TIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHhhHHHHHHHHHHH
Confidence 3332 23334444555666666666666667777776666655543221111 234455555555555
Q ss_pred HHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhh
Q 000199 1406 IAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKS 1442 (1872)
Q Consensus 1406 iaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~ 1442 (1872)
|-. |-.+-.|+++ |..+....+...++-+
T Consensus 143 iEr-------~alLE~El~E-Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 143 IER-------NAFLESELDE-KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHH-------HHHHHHHHHH-HHHHHCCC--------
T ss_pred HHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 443 3333444443 5555555555555543
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.66 E-value=19 Score=36.41 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=58.0
Q ss_pred cchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHH
Q 000199 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMR 536 (1872)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Le 536 (1872)
+...|+..|-.|-.||+..+..+..|+..+..++.-|+.-. .+.| ..|..|++++..+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l---~~~q------------------~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELAL---KDAR------------------NKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHhHHHHH
Confidence 56778888889999999999999999999999988887532 2211 26788999999999
Q ss_pred HHHHHHHHHHhh
Q 000199 537 LDVDEQVLRFSE 548 (1872)
Q Consensus 537 eel~~Q~~rF~e 548 (1872)
.+|..|...|.+
T Consensus 96 ~e~~~ql~EYq~ 107 (129)
T 3tnu_B 96 QDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.40 E-value=2.6 Score=41.13 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=63.4
Q ss_pred hhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhh
Q 000199 745 DIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESL 824 (1872)
Q Consensus 745 ~~~~l~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l 824 (1872)
++..||.-=|+||-|--.+-.+|+.||++++.+. ++ .-.+..+.|++.+ ..|...+..-+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~-------~~---------~~~~~~~~ye~~i---~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK-------GQ---------GKSRLGDLYEEEM---RELRRQVDQLTN 70 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hc---------cCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 4667888889999999999999999998775332 11 1123556677665 457777888888
Q ss_pred hcccchhhhHHHHHHHhHhhHhh
Q 000199 825 ENGNLRRETSLLQKELETVKIDF 847 (1872)
Q Consensus 825 ~~~~l~~e~~~~~~~~~~~k~~~ 847 (1872)
+++.+.-|+..++++++.+|.++
T Consensus 71 ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 71 DKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 89999999999999988888764
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=75.14 E-value=64 Score=34.89 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=60.7
Q ss_pred hhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc-cc
Q 000199 1418 SLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE-GY 1496 (1872)
Q Consensus 1418 ~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~-~~ 1496 (1872)
..+..|+.....+.+.+..=...+++.+.-+.-+..=+.+++++++.+...-.-++--+-.|-.++..+..+..+++ +-
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555566666555556666666666666677778888888777666666666677777777777776664 44
Q ss_pred hhHHHHHHHHhH
Q 000199 1497 IDEQKMLQNQCN 1508 (1872)
Q Consensus 1497 ~~el~~l~~~~~ 1508 (1872)
..+|..+|.+|.
T Consensus 142 ~~eLKalQ~~~e 153 (168)
T 3o0z_A 142 NYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567888877764
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=74.68 E-value=7.7 Score=37.44 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHH
Q 000199 1395 LDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEI 1474 (1872)
Q Consensus 1395 I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei 1474 (1872)
|..|+..+..+..+|--+.-.-|-+...++.+|.|.|....... ... .=++++-..+|+++++|.++|.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~----~~E-------~d~~~LrkdvD~a~l~r~dLE~ 70 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE----EAE-------NTLQSFRQDVDNASLARLDLER 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHhhHHHHHHHHHHHHH
Confidence 56778888888888777777777788888888877665432221 112 2355666789999999999999
Q ss_pred HHHHHHHHHHhh
Q 000199 1475 KVVVLKAKLAEQ 1486 (1872)
Q Consensus 1475 ~~~vlk~kl~e~ 1486 (1872)
++--|+.-|.=+
T Consensus 71 kvesL~eEl~fL 82 (86)
T 3swk_A 71 KVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888766543
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.34 E-value=1.2e+02 Score=40.42 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=9.5
Q ss_pred HhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhh-HHhhhhhhhhhHHHH
Q 000199 993 NAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQV-VTEEFDRSKQTISEL 1045 (1872)
Q Consensus 993 y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~-v~~E~~~tK~~~~el 1045 (1872)
....+..|-+.+..|...|++...+|.+|.+++..+.. ...|...++..+++|
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34446777777777888888878888877777654433 344444444444443
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.01 E-value=1.2e+02 Score=33.25 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=45.7
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 000199 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQ 584 (1872)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaer 584 (1872)
..+|+.|+.++..+... ...+...+..|+-+|-..|+.+-.+..+|-=..-+|-.|-||
T Consensus 87 ~~~~~~Lq~el~~l~~~----~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAI----KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34788888888877644 444556678889999999999988888888877777777766
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.01 E-value=73 Score=46.84 Aligned_cols=72 Identities=7% Similarity=0.192 Sum_probs=44.2
Q ss_pred HhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhh
Q 000199 1071 DSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQN 1142 (1872)
Q Consensus 1071 ~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls 1142 (1872)
.=++..+..+..++...+.-...++..+.++-..|..++..+...-.+++.| ++....+++.|..++..|-+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555555555555556666666666666666666666666666666 55566677777777666644
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.76 E-value=57 Score=34.83 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHhhhhhhhhhHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHhHHHhhH
Q 000199 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQD-------KSEESVKLALEVDSFKQSFQ 1078 (1872)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqd-------k~ees~~~~~El~slK~s~q 1078 (1872)
.||-+|+............|..+...-.+++.+..-.+....|...|+..++. ....-.++-.||+.|-.||=
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF 96 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 96 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555666666666555555555555555666665555533 23456788999999998854
Q ss_pred hh-HHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHH
Q 000199 1079 SL-HDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1872)
Q Consensus 1079 SL-hdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1872)
.- +.=--.+|..+...+.++..|-.+|.++..-|.++..+.++|.
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4444567888999999999999999999999999888888883
No 21
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.90 E-value=55 Score=31.25 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 000199 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEER 550 (1872)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~eDl 550 (1872)
||+..+..+..|+..+..++.-|+.-. .+.| .+|+.+++++..+..+|..|...|.+=+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~---~~~q------------------~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEA---ANYQ------------------DTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998887532 2211 3788999999999999999988875433
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.25 E-value=24 Score=35.41 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=32.6
Q ss_pred CcchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HH
Q 000199 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMEC--YY 493 (1872)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~l--dY 493 (1872)
.+...++.+|-.|-.|-+..+++++.||+++++.++ ||
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~ 51 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDY 51 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 367889999999999999999999999999998544 55
No 23
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.90 E-value=1.1e+02 Score=31.41 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000199 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1872)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1872)
||+..+..-...+..+.-+..+++-|++++.+ +-.++-||..|++|++.-..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q---------------~~~~lE~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ---------------HKIVMETVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 45555555566677777778888888888887 22344678888888766443
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.66 E-value=1.7e+02 Score=29.76 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=71.3
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhHHhhhhhhhhhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHh
Q 000199 1384 CNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEID 1463 (1872)
Q Consensus 1384 ~~keNaeLl~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~eeeid 1463 (1872)
..++...+...|..|+..|+.+-+....|-.. .+....+++.+...|..=+.++...++-.+
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~------------------~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~ 72 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEK------------------MVSLLQEKNDLQLQVQAEQDNLADAEERCD 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444555555666666665555444444333 344444555666666667788888999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHH
Q 000199 1464 DLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLS 1515 (1872)
Q Consensus 1464 ~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qkls 1515 (1872)
.|...|.++|-++--+.++|++...+...+.. +-..+...|.+|...|-
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~---~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA---KKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887666555532 22344555555555443
No 25
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.30 E-value=1.2e+02 Score=30.87 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHH
Q 000199 481 SLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKEL 560 (1872)
Q Consensus 481 eLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~eDl~a~~~~kvEq 560 (1872)
+|..+..+|.-++|.+|-++++++. .+..+|+.|+.++..|...- ..+...++.|+-+|-.+
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~--------------e~~~~~~~Lq~El~~lr~~~----~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA--------------QSYKQVSVLEDDLSQTRAIK----EQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhchHH
Confidence 5677778888888888888888443 33456777777777765443 34456678888899999
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHH
Q 000199 561 ERRAVSAEAALKRARLNYSIAVNQ 584 (1872)
Q Consensus 561 EqRAI~AEeALRKtRwnnA~aaer 584 (1872)
||++-.+-.+|-=.=-+|-.|.||
T Consensus 69 ER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 69 ERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999888888887655555555554
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.38 E-value=31 Score=42.61 Aligned_cols=101 Identities=7% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHhHhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccc-
Q 000199 1094 LKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGER- 1172 (1872)
Q Consensus 1094 l~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~a~t~~q~e~~lqeL~~eL~~~~- 1172 (1872)
+...+.+|-.+|+.....-.+.++--..++..+...+...+...--.+.+++++++- ..+++.-|++--.+++.++
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRr---IqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSR---IEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333334444444444444444333444455555543 3345555555555555554
Q ss_pred ---cchHHHHhhhhhhHHHHHHHHHhhh
Q 000199 1173 ---SLSDELKSRAIDISSQLNEKQQQLI 1197 (1872)
Q Consensus 1173 ---~~~e~LQsk~~Dves~Ln~~~~~e~ 1197 (1872)
.++.++|++..||..+|+-|.--=.
T Consensus 139 nLedq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5677899999999999999875433
No 27
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=55.24 E-value=1.4e+02 Score=31.77 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=53.5
Q ss_pred HHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhh
Q 000199 951 FEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLS 1015 (1872)
Q Consensus 951 ~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~ 1015 (1872)
.+.|+...-+++..+.+-+..|+-++.++.+.+|.-.-.+++|+++-..+-..+..|...|++.-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999976555555554444444443
No 28
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=54.63 E-value=29 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCC
Q 000199 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGD 128 (1872)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn 128 (1872)
.++..+||++.|+|+++.........-+||+.-.
T Consensus 102 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 3467899999999999988777778889996544
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.48 E-value=87 Score=32.58 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE 502 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1872)
..|++.|-++..||..+|.+.-++.++.+.+...++.|+.++..
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555554444444444444333
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.45 E-value=29 Score=42.88 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=84.5
Q ss_pred hhHHHhhhhhHHHHHHhh-hhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhH-HHHHHHhHhhHhhhhhhhhhHhHH
Q 000199 781 NRHLTQKLSEWESLMMDF-KSFQSKYEAIAAEKTELANLLEKESLENGNLRRETS-LLQKELETVKIDFDELASVNKNLQ 858 (1872)
Q Consensus 781 n~~l~~k~~e~e~~v~e~-~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~-~~~~~~~~~k~~~~~~~s~~~~lq 858 (1872)
|.=|+..|+++...|.+| +++.+-|.....=...|..=+..- -++.+-.+|++ .|...+..||++++.+.+....||
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~-~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA-NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788877777665 222222222211111222222222 25556677888 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCc---ccccccccccccccccCCHHHHHHHHHHH
Q 000199 859 RTINNLQNKMHDMLSSYGESF---SELCLHNKSADQNLESKDLTSVIMRLEVL 908 (1872)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~---~~l~l~~~s~~~dl~~~d~~~v~~~le~~ 908 (1872)
.++..+-.||+.|=.--|+.| -+ .|.........-++|.+.=.||+.+
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKg--sCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRG--SCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGG--TBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cccchheeecchHHHHHHHHHHHHH
Confidence 999999999998866444433 23 5778888888888898876666644
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.02 E-value=97 Score=33.11 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=37.3
Q ss_pred hhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhccccc
Q 000199 1234 LASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQ 1286 (1872)
Q Consensus 1234 ~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~ 1286 (1872)
+..+......-+..|..++..++..|..+|.....+...|.++-+.| |+.-
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL--FeEA 99 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL--FDEA 99 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33334444555677788888889999888888888888888887777 6543
No 32
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=50.36 E-value=3.3e+02 Score=30.95 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccH
Q 000199 1419 LIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSE 1459 (1872)
Q Consensus 1419 ~~AElEE~Kqr~E~~l~~~~Eek~k~a~Eve~lK~LL~~~e 1459 (1872)
|.-+++++++++.--.-.++ ..++..++.++.=|..+=
T Consensus 214 ~~qq~e~f~~~~~p~~e~~~---~~l~~~~e~l~~~l~~~~ 251 (273)
T 3s84_A 214 LDQQVEEFRRRVEPYGENFN---KALVQQMEQLRQKLGPHA 251 (273)
T ss_dssp HHHHHHHHHHHHTTHHHHHH---HHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHhHhhHHHHH---HHHHHHHHHHHHHhCcch
Confidence 33455566555533222221 345556666665554443
No 33
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.79 E-value=1.8e+02 Score=29.58 Aligned_cols=29 Identities=7% Similarity=0.174 Sum_probs=13.3
Q ss_pred HHHHHhhhhhhhHhhhhHHHHhhhchhhh
Q 000199 1248 LRDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1872)
Q Consensus 1248 l~eEl~~erslreeLE~~V~~L~skLdEk 1276 (1872)
.++....+..-|..++..|.+|+.+|++.
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555444443
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.87 E-value=42 Score=34.37 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=42.5
Q ss_pred hHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhh-chhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 311 SIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIA-SGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 311 sIEkLKsE~~sL~Rqad~selELQtLRKQivKEsk-rgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
.|+.|+.|+..|.-..+.+.+|-| .++...+ +-..|..|+..-+..++..+.||++||
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q----~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQ----RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999988 5555555 355677777776665555555555555
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.70 E-value=89 Score=37.42 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHH
Q 000199 1037 RSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLV 1086 (1872)
Q Consensus 1037 ~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~a 1086 (1872)
..+.-.+.+..+++++-.+++.+.++--.+-.|++.++.-++.-.+....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 33344455555555555555555555444444444444444443333333
No 36
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=44.56 E-value=33 Score=32.58 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEeeee
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQLL 140 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~l 140 (1872)
+..++|++.|+|.++.. ..+....+||... ....+||+++..
T Consensus 83 ~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~-~~g~i~~~le~~ 124 (126)
T 1rlw_A 83 MDETLGTATFTVSSMKV-GEKKEVPFIFNQV-TEMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCT-TCEEEEEEEETTT-EEEEEEEEEECC
T ss_pred CCceeEEEEEEHHHccC-CCcEEEEEEcCCC-ceEEEEEEEEeC
Confidence 57899999999999864 5677889999874 344677776643
No 37
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.52 E-value=26 Score=33.82 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 477 AERESLAKKMDQMECYYEALIQELEE 502 (1872)
Q Consensus 477 ~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1872)
--|++|-.++|+|++.+++|+.||+-
T Consensus 30 vvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 30 IVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34678999999999999999998776
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.69 E-value=36 Score=34.58 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred hhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcc
Q 000199 1233 RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESS 1312 (1872)
Q Consensus 1233 q~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~~~EL~~Lk~qvsdLese~S~~~~kts 1312 (1872)
..-.++..|+..+++|+-||+.+++.+..|+..+.++.... ..++..++..+.+|+.++.....
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~-------------~~~l~~~q~~i~~lE~eL~~~r~--- 98 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY-------------CMQLAQIQEMIGSVEEQLAQLRC--- 98 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34456888999999999999999999999999988876643 34567778888888888885542
Q ss_pred ccchhhHHHHHHHhhh
Q 000199 1313 SVTSLQSELSEMHELL 1328 (1872)
Q Consensus 1313 ef~~Ls~hLsElke~l 1328 (1872)
.+.-||.|..+.+
T Consensus 99 ---em~~ql~EYq~Ll 111 (131)
T 3tnu_A 99 ---EMEQQNQEYKILL 111 (131)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 2456677766543
No 39
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.91 E-value=29 Score=36.42 Aligned_cols=63 Identities=24% Similarity=0.197 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhHHHhhHhhHHH-HHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHHH
Q 000199 1061 EESVKLALEVDSFKQSFQSLHDE-LLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1872)
Q Consensus 1061 ees~~~~~El~slK~s~qSLhdE-l~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1872)
.+-.++-.||+.|-.||=.--+. --.+|..+...+.++..|-.++.++..-|.++..|.++|.
T Consensus 67 ~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 67 EEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999886544443 4567888899999999999999999999999888888874
No 40
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=40.32 E-value=14 Score=35.66 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred CcccccceeecchhhcccccCCeeeeecCC-CCCCCCeEEEEeeeecC
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPLH-GGDSGTILHVTVQLLTS 142 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk-~cnsGtvLHVtIQ~l~~ 142 (1872)
++..++|++.|++.+......+....+||. +......|||.++....
T Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 468899999999999966555556677774 22244568898887764
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.45 E-value=1.7e+02 Score=29.53 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhh-------chhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHHHHHhHHh
Q 000199 1340 TQYEAWVEELVQQVYS-------TDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVL 1412 (1872)
Q Consensus 1340 eQYEtkvqEL~qQL~~-------Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeasiaekR~L 1412 (1872)
..|.+++++|..+... ++.-..++....+....++...+ ..|+.|...|.+++......+.+-+..
T Consensus 11 ~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~-------~~~~~LE~~l~e~e~~~~~~l~~~q~~ 83 (129)
T 3tnu_B 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK-------KQCANLQNAIADAEQRGELALKDARNK 83 (129)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888766532 33444444444444444444332 235555556665555555555554444
Q ss_pred hhhhhhhhhhhhhhhhhhHHhhhhhh---hhhhhhHHHHHHHHHhhh
Q 000199 1413 FHENNSLIAQSEEYKSRAETMADNYG---EHKSQLALEVERMKQLLV 1456 (1872)
Q Consensus 1413 ~nand~~~AElEE~Kqr~E~~l~~~~---Eek~k~a~Eve~lK~LL~ 1456 (1872)
+.... +++-.-|+..+.-+++|. .-|..+..||+--+.||-
T Consensus 84 i~~lE---~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 84 LAELE---EALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 43322 444444444444444443 334455556666666654
No 42
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=39.09 E-value=30 Score=33.71 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=51.5
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000199 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIK 373 (1872)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1872)
+++|++||.|++-|.|.|-...|+|..|..-|=.--.+--+++.+.-....+-+.+|+++..+..
T Consensus 14 ~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999776655555556778888889999999999998877653
No 43
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.88 E-value=85 Score=30.16 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 000199 470 RELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEE 549 (1872)
Q Consensus 470 ~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~eD 549 (1872)
.||+..+..+..|+..+..++.-|+. ++++.| .+|+.+++++..+..+|..|...|.+=
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~---~l~~~q------------------~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR---ERDTSR------------------RLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888777654 233321 378888999999999999998888543
Q ss_pred H
Q 000199 550 R 550 (1872)
Q Consensus 550 l 550 (1872)
+
T Consensus 62 l 62 (86)
T 1x8y_A 62 L 62 (86)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.70 E-value=45 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCCCCC
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPLHGGDSG 130 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsG 130 (1872)
++..+||++.|+|.++... .+...-+||.....|
T Consensus 106 ~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~~~~~ 139 (141)
T 2d8k_A 106 SRNDPIGEVSIPLNKVDLT-QMQTFWKDLKPSGPS 139 (141)
T ss_dssp SSCEEEEEEEEETTTSCTT-SCEEEEECCEECCCC
T ss_pred CCCcEEEEEEEEhhhhcCC-CCccEEEECcCCCCC
Confidence 4678999999999998764 467888999776654
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.75 E-value=2.7e+02 Score=32.74 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 000199 529 KAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQ 584 (1872)
Q Consensus 529 eaqve~Leeel~~Q~~rF~eDl~a~~~~kvEqEqRAI~AEeALRKtRwnnA~aaer 584 (1872)
.++++...+.++.-...+.+.++.+...|..++.-+-....++..++-.|-.|+.|
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 33444444444444444444444444444444444445555555555555555444
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.61 E-value=72 Score=32.50 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHHHHHHHHHh
Q 000199 792 ESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDM 871 (1872)
Q Consensus 792 e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~ 871 (1872)
+++-.++.+|.+||+..-.|-. -..+.|++|+..++..-+.++..+.+|--.|++|.+---....-|.++
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e~~----------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQSY----------KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4666888999999998665533 245678899999999999999999999999999987655444444444
Q ss_pred hhcccC
Q 000199 872 LSSYGE 877 (1872)
Q Consensus 872 l~sy~~ 877 (1872)
=+-||.
T Consensus 83 E~k~n~ 88 (111)
T 2v66_B 83 EQRLNQ 88 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 47
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=36.37 E-value=42 Score=33.07 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=32.0
Q ss_pred CcccccceeecchhhcccccCC-----eeeeecCCCC----CCCCeEEEEeeee
Q 000199 96 SRSSILGEATINLADYADASKP-----STVLLPLHGG----DSGTILHVTVQLL 140 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp-----~~VSLPLk~c----nsGtvLHVtIQ~l 140 (1872)
++..++|++.|++.+....... ....+||... .....|||+++.+
T Consensus 99 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 99 TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp SCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred cCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 4788999999999998876542 1366788433 3346778888754
No 48
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.76 E-value=74 Score=30.44 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=40.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhh
Q 000199 699 TLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFL 749 (1872)
Q Consensus 699 ~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~~l 749 (1872)
-|++++-....+|+.-.++|.+|+.+|. .++.+++.|++-+|...|+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc
Confidence 4677777788889999999999999985 6889999999999988775
No 49
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.55 E-value=7.8e+02 Score=36.85 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHhHhhhhhh---------hhhhhhhhhhHhhHHHHHHH
Q 000199 1097 AVSDITSQLS---------AKHSQLLDFDQQKSELIQKT 1126 (1872)
Q Consensus 1097 ~vsdLaSEL~---------eK~~sL~sfd~enqeLl~~~ 1126 (1872)
+++.||+=.. .+.+.+.+|+.....++.+.
T Consensus 1661 SLtrLAa~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~a 1699 (3245)
T 3vkg_A 1661 VLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRA 1699 (3245)
T ss_dssp HHHHHHHHHTTCEEECCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHH
Confidence 4666666555 45677778887777776554
No 50
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.79 E-value=2.3e+02 Score=27.44 Aligned_cols=10 Identities=10% Similarity=0.262 Sum_probs=4.7
Q ss_pred hhhhhhhhHH
Q 000199 517 EHSSCLYTVS 526 (1872)
Q Consensus 517 EhS~~l~tIs 526 (1872)
-|-.|=..|.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 3555544443
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.66 E-value=1.1e+02 Score=29.90 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=18.0
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHhhhh
Q 000199 349 QLAEEVSALKSECSHLKSDLERLIKLRS 376 (1872)
Q Consensus 349 dLsrEVs~LK~ERD~LK~EcEqLKs~kk 376 (1872)
.|+.|+..++..|+.|.+|.++||.-+.
T Consensus 38 ~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 38 SLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5666666666677777777776665443
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.16 E-value=1.1e+02 Score=36.11 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=50.8
Q ss_pred HHHHHhHHHHHHHHHHhhhccccchhHHHHHHHHHh--------hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH
Q 000199 918 QLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEH--------DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV 989 (1872)
Q Consensus 918 ~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~--------d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ 989 (1872)
++.+++++++...+..+......+-.+..+.+.+|. .+..|-.-....+++.+++|.+.+.+..-+++.++-
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 677888888888888877777666666666666662 333333344445566677777777766666666555
Q ss_pred HHhHhhhhh
Q 000199 990 EENNAQRHT 998 (1872)
Q Consensus 990 ee~y~~~~~ 998 (1872)
.+++...+.
T Consensus 444 ~~~~~~~~~ 452 (487)
T 3oja_A 444 ETQLAEENA 452 (487)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555444433
No 53
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=34.13 E-value=33 Score=34.20 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred ccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEee
Q 000199 98 SSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQ 138 (1872)
Q Consensus 98 sgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ 138 (1872)
..+||++.|++.+......+..--+||.....|...|+.++
T Consensus 109 d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~ 149 (153)
T 3fbk_A 109 SGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149 (153)
T ss_dssp CEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred CcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence 78999999999999877788999999998888887777654
No 54
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=32.49 E-value=55 Score=31.23 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.7
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 310 SSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 310 dsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
++|++||.|++-|.|.|-...++|-.|..-|=.--.+--+++.+.-....+-+.+|+++-.|.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999976655444444667888888889999999998876653
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.74 E-value=2.1e+02 Score=28.72 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=20.9
Q ss_pred HhhhhhhhHhhhhHHHHhhhchhhhh
Q 000199 1252 LQSERSLRDELKNVVTDLTSQLNEKH 1277 (1872)
Q Consensus 1252 l~~erslreeLE~~V~~L~skLdEk~ 1277 (1872)
+-+.|--+..+++++..|..+|.+++
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456667899999999999999875
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.59 E-value=1.3e+02 Score=31.32 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=47.9
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000199 310 SSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1872)
Q Consensus 310 dsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1872)
|+.-+++.+...|.++.+..+-|+..|+.+++.--..-..+.+|+..|+.|-+.|..++-+|-
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777778888888888877777777778888888888888777776664
No 57
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.03 E-value=67 Score=31.09 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=31.8
Q ss_pred CcccccceeecchhhcccccC-Ceeee-ecCCCCC---CCCeEEEEeeeecC
Q 000199 96 SRSSILGEATINLADYADASK-PSTVL-LPLHGGD---SGTILHVTVQLLTS 142 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~k-p~~VS-LPLk~cn---sGtvLHVtIQ~l~~ 142 (1872)
++..+||++.|++.++..... ...+. +||.+.+ .++.|||.|+...+
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 467899999999999865432 22233 5575543 33788999987753
No 58
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=30.51 E-value=52 Score=30.64 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHH
Q 000199 1468 SREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLS 1515 (1872)
Q Consensus 1468 ~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~el~qkls 1515 (1872)
.+-++||+||-|.++|+++ |. ..-..++.+|++++.||-
T Consensus 17 klR~IEvk~me~rD~LEeq--------G~-~~~~eI~~kV~~~RkkL~ 55 (61)
T 2e62_A 17 KRRRIEVALIEYRETLEEQ--------GM-KNPEEIERKVEINRKRLE 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--------CC-CcHHHHHHHHHHHHHHHH
Confidence 4568899999999999997 21 124567889999999884
No 59
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=30.49 E-value=51 Score=31.80 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=30.5
Q ss_pred ccccceeecchhhcccccCCeeeeecCCCCC------CCCeEEEEee
Q 000199 98 SSILGEATINLADYADASKPSTVLLPLHGGD------SGTILHVTVQ 138 (1872)
Q Consensus 98 sgiLGEasinlAdY~~a~kp~~VSLPLk~cn------sGtvLHVtIQ 138 (1872)
..+||++.|.+.+......+....+||..-+ ...-|||.++
T Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 84 AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp TTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred CCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 5899999999999877777666778886542 1346777765
No 60
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.79 E-value=58 Score=37.06 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=38.8
Q ss_pred hHHHHHhHHhhhhhhh----------hhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhc
Q 000199 311 SIHELKLEVSSLQSHA----------DEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSC 377 (1872)
Q Consensus 311 sIEkLKsE~~sL~Rqa----------d~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~ 377 (1872)
.|+.|..|+..|.++. .. +-.+..|++|+..=..+-.-|..++..++.|-..||.|+++|++-=..
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~ 100 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG 100 (251)
T ss_dssp ---------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 4445555555554443 33 334667778886666667779999999999999999999999976553
No 61
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=29.12 E-value=71 Score=32.50 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred CcccccceeecchhhcccccCCee-----eeecCCC----CCCCCeEEEEeeeecC
Q 000199 96 SRSSILGEATINLADYADASKPST-----VLLPLHG----GDSGTILHVTVQLLTS 142 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~-----VSLPLk~----cnsGtvLHVtIQ~l~~ 142 (1872)
++..+||++.|+|++......... ..+||.. ......|||.|..+..
T Consensus 87 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 87 TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp --CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 467899999999999987644311 4567643 2245789999998874
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.07 E-value=83 Score=32.24 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhhhccccc----chHHHHHHHHHhhhHhhhhhhhhhcccc
Q 000199 1239 NTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQ----KSELVQLKLLVLDLESEKSRASEESSSV 1314 (1872)
Q Consensus 1239 ~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL~~~d~~----~~EL~~Lk~qvsdLese~S~~~~ktsef 1314 (1872)
..|+.-+..+..+++.. +.+....|..|+++++++++.|..-... ..|...|+....+|....- ++.
T Consensus 18 e~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~----~~~-- 88 (120)
T 3i00_A 18 ERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE----DTE-- 88 (120)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhH--
Confidence 34555555555555543 7788888888888888888877322211 2335555555554432222 222
Q ss_pred chhhHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000199 1315 TSLQSELSEMHELLLAVDVRLIFTRTQYE 1343 (1872)
Q Consensus 1315 ~~Ls~hLsElke~l~A~dvriiF~KeQYE 1343 (1872)
.++..+.|...++-|..-||-=.|+-|-
T Consensus 89 -~~q~~~~e~E~kAqa~Eerf~KLKe~yt 116 (120)
T 3i00_A 89 -KAQRSLSEIERKAQANEQRYSKLKEKYS 116 (120)
T ss_dssp -----------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777766666553
No 63
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.40 E-value=1.5e+02 Score=32.63 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=39.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHH
Q 000199 1033 EEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVE 1087 (1872)
Q Consensus 1033 ~E~~~tK~~~~el~~En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~ae 1087 (1872)
+-++..-+.|+.|.-||..|..-++.|+.+...+-.+|.+++....-..+.+..+
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4456667788999999999999999999988888888888888776555555433
No 64
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.19 E-value=3e+02 Score=25.35 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHhHhhhhhhHHHHHhHHHHHhHHHHHHHHHHH
Q 000199 1335 LIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSA 1405 (1872)
Q Consensus 1335 iiF~KeQYEtkvqEL~qQL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeLl~~I~eLesELeas 1405 (1872)
|.-++.|||.-++--+..+-. =++.|+.++-.....+-..=...-.+..+|-..|.+|++||++.
T Consensus 11 l~eiRaQYE~ia~knr~EaE~------~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE------WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.76 E-value=1.5e+02 Score=27.14 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1872)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1872)
++++.+|..+++....+..+|..++++|.-.+.-|++-|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999988887554
No 66
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.16 E-value=1.5e+02 Score=28.80 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=42.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhch
Q 000199 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1872)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skL 1273 (1872)
..++.+|++|....+-|-=-+.++.+.+.+-+++ =..+..|+...+..|..++.++..|-..|
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999877788888888887777 34456677777777777777766665443
No 67
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=25.68 E-value=1.5e+02 Score=29.30 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 000199 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEER 550 (1872)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~eDl 550 (1872)
.|..++..+..|+.++..++..|.. ++++.| .+|..+++++..+..+|..|...|.+=+
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q------------------~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAK---EKDNSR------------------RMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566678888888888887764 333322 3677889999999999999988886433
Q ss_pred h
Q 000199 551 R 551 (1872)
Q Consensus 551 ~ 551 (1872)
.
T Consensus 72 n 72 (95)
T 3mov_A 72 D 72 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.35 E-value=1.6e+02 Score=29.60 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=18.8
Q ss_pred hhHHHHhhHHHHHHHHHhhhhcCCC
Q 000199 356 ALKSECSHLKSDLERLIKLRSCHPF 380 (1872)
Q Consensus 356 ~LK~ERD~LK~EcEqLKs~kk~~~~ 380 (1872)
..+.+-..|+.|||.||..-..+.+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888899999998877665553
No 69
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.04 E-value=1.8e+02 Score=28.94 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=43.0
Q ss_pred chhhhhhhh-hcccccchHHHHHHHHHh-hhHhhhhhhhhhccccchhhHHHHHHH---hhhhhhhHHHHHHHHHHHHHH
Q 000199 1272 QLNEKHCQL-LDLDQQKSELVQLKLLVL-DLESEKSRASEESSSVTSLQSELSEMH---ELLLAVDVRLIFTRTQYEAWV 1346 (1872)
Q Consensus 1272 kLdEk~~qL-~~~d~~~~EL~~Lk~qvs-dLese~S~~~~ktsef~~Ls~hLsElk---e~l~A~dvriiF~KeQYEtkv 1346 (1872)
.|+|.=-+| .-||....|...++.+.. |.+.+.. .|+.||. .++-.=-..-.=+|.+||..|
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~-------------~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI 77 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMN-------------QQLAEMQQIRNTVYERELTHRKMKDAYEEEI 77 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444 457777777777887775 7777644 4444544 222222233444699999999
Q ss_pred HHHHHHHhhchh
Q 000199 1347 EELVQQVYSTDR 1358 (1872)
Q Consensus 1347 qEL~qQL~~Skk 1358 (1872)
.-|+.+|..-+.
T Consensus 78 ~rLr~eLe~r~~ 89 (92)
T 3vp9_A 78 KHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHHcCC
Confidence 999999986554
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.89 E-value=1.3e+02 Score=35.84 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 464 KIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1872)
Q Consensus 464 KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1872)
||-.|..||+..++++++|+..+++++..++.++++|-
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888899999888888888643
No 71
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=24.31 E-value=83 Score=30.35 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=30.5
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCCC----CCCeEEEEeeee
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPLHGGD----SGTILHVTVQLL 140 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~cn----sGtvLHVtIQ~l 140 (1872)
++..++|++.|++.+.... ....+||...+ ....|||.|+.+
T Consensus 86 ~~~~~lG~~~i~l~~l~~~---~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 86 KPPDFLGKVAIPLLSIRDG---QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEECCBCEEEGGGCCSS---CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCeeEEEEEEHHHccCC---CceEEEeecCCCCCccceEEEEEEEEE
Confidence 4788999999999998653 23567876432 446788888764
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.33 E-value=2.1e+02 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=18.1
Q ss_pred hhhhhhHHHHHHHH---HhhhHHHHHHHHhHhH
Q 000199 1199 FDQQNSEMIQKIAE---LTSENQALMVSLQEYA 1228 (1872)
Q Consensus 1199 ~~~enSeL~~~~~~---L~~en~a~mv~L~d~k 1228 (1872)
...+|..|.++|+. |-.+|..+-+.+....
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466666777766 4666666666655544
No 73
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.29 E-value=77 Score=26.73 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQME 490 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ 490 (1872)
+.|+.|+.....+||+.|+..--|++|+-.|+
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999987653
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.16 E-value=4.5e+02 Score=25.69 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhH
Q 000199 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSA 528 (1872)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~L 528 (1872)
+-|+.||-.+...|...+-+-++|..+=..++...+.+...-+. ...|.+.|+.||+.-=..|..|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~----L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE----LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999977777777777777766666666554443211 1134555777776654444444
No 75
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=22.94 E-value=1.1e+02 Score=29.66 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.4
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCC
Q 000199 96 SRSSILGEATINLADYADASKPSTVLLPLHG 126 (1872)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~ 126 (1872)
++..+||++.|+|.+... ..+....+||.+
T Consensus 111 ~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~ 140 (142)
T 2chd_A 111 GHNEFIGETRFSLKKLKA-NQRKNFNICLER 140 (142)
T ss_dssp SCEEEEEEEEEEGGGCCT-TCCEEEEEECBC
T ss_pred CCCcEEEEEEEEHHHcCC-CCccEEEEeccc
Confidence 467899999999999775 457888888864
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.86 E-value=3.4e+02 Score=26.65 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHhHhhhhhhhhhhhhccccchHHHHh
Q 000199 1152 VELDSVRNSLQSVHDELHGERSLSDELKS 1180 (1872)
Q Consensus 1152 ~t~~q~e~~lqeL~~eL~~~~~~~e~LQs 1180 (1872)
...+.+.+-+.||.-+++-...+++.|++
T Consensus 67 ~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 67 RQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555555555555555555554
No 77
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.37 E-value=1.5e+02 Score=29.19 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 000199 691 IYLDVFSKTLQKTLLEASGEIRLMKERMDELSHQLE 726 (1872)
Q Consensus 691 i~~~vfs~~l~et~~~a~~~i~~mker~~~l~~ql~ 726 (1872)
=||++...-.|-++.+|+.+.+.+..+|..|.-.+.
T Consensus 28 ~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~ 63 (83)
T 1uii_A 28 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIA 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999988776653
No 78
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.16 E-value=6.1e+02 Score=25.46 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH---HH
Q 000199 464 KIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD---VD 540 (1872)
Q Consensus 464 KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee---l~ 540 (1872)
|-.|....+--.+.-.++++....+|+..++-+++.-+.-.......+.+|++|-......|..++..++++.+. +.
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~ 88 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWA 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888888999999999999999888753222112222457888888888777777777777776654 55
Q ss_pred HHHHHHhhhHhHHH
Q 000199 541 EQVLRFSEERRDLE 554 (1872)
Q Consensus 541 ~Q~~rF~eDl~a~~ 554 (1872)
.+.......++.+.
T Consensus 89 ~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 89 AEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544443
No 79
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.63 E-value=4.5e+02 Score=25.78 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhHHHhhHhhHHHHHHHHHhhhhHHHHHhHhhhhhhhhhhhhhhhhHhhHHH
Q 000199 1048 ENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1872)
Q Consensus 1048 En~al~~slqdk~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1872)
+..++-..|++-..+-..+..||..|..--..+..++.+...-.+.+...-...-.+.+..+.++..|.++..-|
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666666666666666666666666666666666666666666666666666555
No 80
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.62 E-value=2.2e+02 Score=30.09 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=56.9
Q ss_pred HHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHhHhhHhhhhhhhhhHhHHHHHHH
Q 000199 784 LTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINN 863 (1872)
Q Consensus 784 l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~ 863 (1872)
|.+.+.++-.++ ..|-++.++...+|..|...|+.- +...+..+..+...+++.|.+++...+++..|..-+.+
T Consensus 73 l~~~veeA~~~L---~eYn~rL~~E~~dR~~L~~~L~~~---~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 73 LSKTVDEACLLL---AEYNGRLAAELEDRRQLARMLVEY---TQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555444 455788999999999999888764 45667788888899999999999998888887765544
Q ss_pred H
Q 000199 864 L 864 (1872)
Q Consensus 864 l 864 (1872)
|
T Consensus 147 L 147 (152)
T 4fla_A 147 L 147 (152)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=21.52 E-value=1.3e+02 Score=28.85 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=25.9
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCC
Q 000199 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGT 131 (1872)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGt 131 (1872)
+..+||++.|+|++.... ....-+||...+.|.
T Consensus 106 ~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 106 ESEFLGEILIELETALLD--DEPHWYKLQTHDSGP 138 (141)
T ss_dssp CBCCCEEEEEEGGGCCCS--SEEEEEECBCCSSCC
T ss_pred CCceEEEEEEEccccCCC--CCCceEECcccccCC
Confidence 488999999999997653 367788888777663
No 82
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.34 E-value=1.5e+02 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhhh
Q 000199 1246 QSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1872)
Q Consensus 1246 ~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~qL 1280 (1872)
..+..++..++..|..+|.....+-..|.++-+.|
T Consensus 49 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 49 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 83
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.50 E-value=2.7e+02 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHHHhhhhhhhHhhhhHHHHhhhchhhhhhh
Q 000199 1236 SEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQ 1279 (1872)
Q Consensus 1236 ~e~~~Lk~~L~Sl~eEl~~erslreeLE~~V~~L~skLdEk~~q 1279 (1872)
.++..+..-+..+.+.+......|.+|+.+...|..+-+....+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778888888888888999999888887777777655
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.42 E-value=2.1e+02 Score=25.68 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000199 463 GKIFELLRELDESKAERESLAKKMDQMECYYEALIQE 499 (1872)
Q Consensus 463 ~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQe 499 (1872)
+.|.+|-.+.+.+..+...|..++.+|...+..|++.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777766664
No 85
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=20.17 E-value=3e+02 Score=30.30 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCcccccceeecc-hhhcccccCCeeeeecCCCCC----CCCeEEEEeeeec
Q 000199 95 SSRSSILGEATIN-LADYADASKPSTVLLPLHGGD----SGTILHVTVQLLT 141 (1872)
Q Consensus 95 SsksgiLGEasin-lAdY~~a~kp~~VSLPLk~cn----sGtvLHVtIQ~l~ 141 (1872)
.++..++|++.|+ +.+..+...+...-+||.... ...-+++.+....
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence 4578899999995 666666544555566664322 1234677766654
Done!