Query 000200
Match_columns 1871
No_of_seqs 257 out of 413
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1820 Microtubule-associated 100.0 1.9E-69 4.1E-74 692.3 33.8 770 603-1390 7-793 (815)
2 KOG1820 Microtubule-associated 100.0 5.3E-56 1.2E-60 568.8 40.4 754 19-818 13-793 (815)
3 PF12348 CLASP_N: CLASP N term 99.8 3E-20 6.6E-25 213.6 19.6 210 283-496 6-227 (228)
4 PF12348 CLASP_N: CLASP N term 99.7 1.4E-16 3.1E-21 183.2 15.7 208 853-1063 7-227 (228)
5 KOG2171 Karyopherin (importin) 99.5 2E-07 4.2E-12 122.7 69.1 515 289-976 8-560 (1075)
6 KOG2171 Karyopherin (importin) 99.4 2.1E-08 4.5E-13 131.6 55.6 396 56-487 122-562 (1075)
7 KOG1824 TATA-binding protein-i 99.4 1.9E-07 4.1E-12 119.1 55.4 876 16-1041 10-1095(1233)
8 KOG2956 CLIP-associating prote 99.0 2.7E-08 5.8E-13 120.0 20.8 372 127-503 101-506 (516)
9 KOG2023 Nuclear transport rece 99.0 1.9E-05 4E-10 98.6 45.2 350 61-488 136-518 (885)
10 KOG1824 TATA-binding protein-i 98.7 5.9E-05 1.3E-09 97.2 39.4 570 605-1390 9-625 (1233)
11 PLN03200 cellulose synthase-in 98.7 0.0012 2.7E-08 94.2 56.2 600 290-1041 194-860 (2102)
12 PLN03200 cellulose synthase-in 98.7 0.0096 2.1E-07 85.6 62.0 812 277-1388 7-887 (2102)
13 KOG1242 Protein containing ada 98.6 7E-07 1.5E-11 112.0 17.9 305 138-486 27-336 (569)
14 KOG0213 Splicing factor 3b, su 98.6 0.00049 1.1E-08 86.9 39.6 569 336-1039 452-1063(1172)
15 KOG2023 Nuclear transport rece 98.5 3.6E-05 7.9E-10 96.1 28.9 506 361-981 169-706 (885)
16 KOG0212 Uncharacterized conser 98.4 0.00031 6.8E-09 87.1 32.1 279 894-1295 166-454 (675)
17 PF01602 Adaptin_N: Adaptin N 98.4 0.0013 2.9E-08 85.3 40.2 379 291-783 10-401 (526)
18 PRK13800 putative oxidoreducta 98.4 2.1E-05 4.6E-10 108.1 23.7 242 718-1039 622-865 (897)
19 KOG1242 Protein containing ada 98.3 0.00012 2.6E-09 92.4 27.3 309 125-481 131-451 (569)
20 KOG0915 Uncharacterized conser 98.3 0.00012 2.6E-09 98.6 27.6 514 404-1046 819-1368(1702)
21 PRK13800 putative oxidoreducta 98.2 0.0001 2.2E-09 101.5 24.4 260 695-1037 634-895 (897)
22 KOG0213 Splicing factor 3b, su 98.1 0.024 5.2E-07 72.4 39.8 337 323-798 797-1152(1172)
23 PF01602 Adaptin_N: Adaptin N 98.0 0.0025 5.4E-08 82.8 29.6 389 290-792 47-448 (526)
24 KOG0211 Protein phosphatase 2A 98.0 0.015 3.4E-07 77.3 36.6 183 857-1048 483-671 (759)
25 PTZ00429 beta-adaptin; Provisi 98.0 0.0094 2E-07 79.9 34.9 315 99-469 145-541 (746)
26 PRK09687 putative lyase; Provi 98.0 0.00087 1.9E-08 80.4 22.9 63 709-786 19-81 (280)
27 KOG0212 Uncharacterized conser 97.9 0.0018 3.9E-08 80.6 23.9 390 855-1362 2-408 (675)
28 COG5181 HSH155 U2 snRNP splice 97.8 0.089 1.9E-06 66.4 36.5 565 139-810 328-972 (975)
29 KOG2956 CLIP-associating prote 97.8 0.0021 4.5E-08 79.0 22.4 367 698-1071 80-507 (516)
30 KOG2933 Uncharacterized conser 97.8 9.7E-05 2.1E-09 86.5 10.8 178 290-469 93-272 (334)
31 KOG1241 Karyopherin (importin) 97.7 0.28 6.1E-06 63.9 40.0 579 300-1048 145-818 (859)
32 KOG1248 Uncharacterized conser 97.7 0.62 1.3E-05 63.7 46.4 649 314-1057 81-872 (1176)
33 COG5181 HSH155 U2 snRNP splice 97.7 0.03 6.4E-07 70.4 29.4 177 848-1039 687-868 (975)
34 KOG1241 Karyopherin (importin) 97.6 0.26 5.7E-06 64.2 38.1 321 615-948 51-461 (859)
35 KOG0211 Protein phosphatase 2A 97.5 0.03 6.6E-07 74.6 28.2 382 325-793 237-630 (759)
36 PRK09687 putative lyase; Provi 97.3 0.0024 5.3E-08 76.6 14.0 160 288-472 26-186 (280)
37 PTZ00429 beta-adaptin; Provisi 97.3 0.13 2.9E-06 69.2 31.2 177 855-1042 107-286 (746)
38 PF05004 IFRD: Interferon-rela 97.0 0.039 8.4E-07 67.3 19.7 189 289-477 47-260 (309)
39 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.011 2.3E-07 59.9 10.3 54 915-968 6-59 (97)
40 KOG1248 Uncharacterized conser 96.7 5 0.00011 55.4 40.7 629 318-1054 217-911 (1176)
41 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.01 2.2E-07 60.1 10.0 91 345-474 6-96 (97)
42 KOG2933 Uncharacterized conser 96.4 0.018 4E-07 68.1 10.9 179 857-1038 92-274 (334)
43 COG5215 KAP95 Karyopherin (imp 96.2 5.9 0.00013 50.7 40.2 151 336-486 189-369 (858)
44 PF10508 Proteasom_PSMB: Prote 96.2 1.3 2.8E-05 57.9 27.3 102 371-475 43-149 (503)
45 PF02985 HEAT: HEAT repeat; I 96.2 0.0067 1.4E-07 48.3 4.0 30 446-475 1-30 (31)
46 KOG0915 Uncharacterized conser 96.1 5.6 0.00012 56.0 32.7 480 722-1353 822-1340(1702)
47 PF00790 VHS: VHS domain; Int 95.9 0.024 5.2E-07 61.2 7.9 113 860-981 16-134 (140)
48 cd03568 VHS_STAM VHS domain fa 95.8 0.072 1.6E-06 57.9 11.1 110 862-980 13-125 (144)
49 PF10508 Proteasom_PSMB: Prote 95.8 6.9 0.00015 51.3 31.2 387 729-1243 49-465 (503)
50 PF12717 Cnd1: non-SMC mitotic 95.7 0.066 1.4E-06 60.1 10.8 98 380-481 2-99 (178)
51 PF13513 HEAT_EZ: HEAT-like re 95.6 0.02 4.2E-07 51.4 5.2 55 417-472 1-55 (55)
52 PF13646 HEAT_2: HEAT repeats; 95.6 0.033 7.1E-07 54.3 7.1 86 1258-1356 1-88 (88)
53 KOG4535 HEAT and armadillo rep 95.5 0.28 6E-06 60.8 15.7 298 20-361 5-331 (728)
54 cd00020 ARM Armadillo/beta-cat 95.5 0.1 2.2E-06 53.2 10.7 107 366-473 7-119 (120)
55 smart00288 VHS Domain present 95.5 0.085 1.9E-06 56.5 10.4 110 862-980 13-126 (133)
56 COG1413 FOG: HEAT repeat [Ener 95.3 2.1 4.6E-05 52.6 22.9 262 717-1055 43-318 (335)
57 cd00020 ARM Armadillo/beta-cat 95.2 0.04 8.8E-07 56.1 6.4 108 856-964 10-119 (120)
58 cd03561 VHS VHS domain family; 95.1 0.1 2.2E-06 56.0 9.5 108 862-978 13-126 (133)
59 PF13646 HEAT_2: HEAT repeats; 95.0 0.14 3E-06 49.9 9.5 86 368-470 1-88 (88)
60 cd03569 VHS_Hrs_Vps27p VHS dom 94.9 0.14 3.1E-06 55.5 10.0 111 861-980 16-129 (142)
61 KOG2032 Uncharacterized conser 94.8 0.31 6.7E-06 61.1 13.5 193 858-1053 222-428 (533)
62 PF05004 IFRD: Interferon-rela 94.5 0.27 5.9E-06 60.1 12.2 184 857-1041 47-257 (309)
63 KOG2032 Uncharacterized conser 94.4 0.84 1.8E-05 57.4 15.8 211 289-501 221-443 (533)
64 PF12460 MMS19_C: RNAPII trans 94.4 2 4.3E-05 54.8 20.0 187 295-486 200-405 (415)
65 cd03565 VHS_Tom1 VHS domain fa 94.3 0.36 7.8E-06 52.4 11.1 111 862-981 14-131 (141)
66 cd03567 VHS_GGA VHS domain fam 94.0 0.5 1.1E-05 51.1 11.5 98 862-968 14-119 (139)
67 PF04118 Dopey_N: Dopey, N-ter 94.0 0.69 1.5E-05 56.4 14.0 165 869-1040 71-253 (307)
68 PF12717 Cnd1: non-SMC mitotic 93.9 1.3 2.9E-05 49.7 15.2 111 339-457 2-113 (178)
69 KOG2259 Uncharacterized conser 93.9 28 0.00061 45.8 27.7 279 128-437 198-516 (823)
70 COG5215 KAP95 Karyopherin (imp 93.7 30 0.00064 44.8 27.0 357 360-812 314-692 (858)
71 KOG1060 Vesicle coat complex A 93.4 6.8 0.00015 51.9 21.7 341 906-1364 45-425 (968)
72 cd00197 VHS_ENTH_ANTH VHS, ENT 92.1 0.62 1.3E-05 48.5 8.6 75 890-964 32-114 (115)
73 KOG1061 Vesicle coat complex A 91.9 32 0.0007 46.1 25.0 151 301-457 137-292 (734)
74 KOG1087 Cytosolic sorting prot 91.8 0.43 9.3E-06 60.8 8.3 101 860-969 12-116 (470)
75 KOG1058 Vesicle coat complex C 91.6 5.2 0.00011 52.7 17.2 133 848-1006 312-447 (948)
76 TIGR02270 conserved hypothetic 91.3 1.7 3.6E-05 55.3 12.8 119 326-472 87-205 (410)
77 TIGR02270 conserved hypothetic 91.3 4.1 8.8E-05 51.9 16.1 146 857-1040 121-266 (410)
78 PF02985 HEAT: HEAT repeat; I 91.1 0.26 5.7E-06 39.2 3.5 30 1014-1043 2-31 (31)
79 KOG1062 Vesicle coat complex A 90.9 12 0.00025 50.1 19.6 292 326-752 108-419 (866)
80 PF13251 DUF4042: Domain of un 90.8 1.9 4.2E-05 48.8 11.3 135 341-476 2-176 (182)
81 PF10274 ParcG: Parkin co-regu 90.7 0.8 1.7E-05 51.6 8.1 123 848-973 34-172 (183)
82 KOG0166 Karyopherin (importin) 90.6 3.3 7.2E-05 53.4 14.3 186 289-477 70-269 (514)
83 KOG2025 Chromosome condensatio 90.3 47 0.001 44.2 23.7 254 116-502 25-292 (892)
84 KOG1240 Protein kinase contain 90.0 15 0.00032 51.1 19.9 278 617-981 439-745 (1431)
85 KOG1059 Vesicle coat complex A 89.6 6 0.00013 52.0 15.3 183 288-482 147-370 (877)
86 KOG0392 SNF2 family DNA-depend 89.2 1.8 3.8E-05 59.6 10.7 202 300-503 748-961 (1549)
87 KOG1240 Protein kinase contain 89.0 5.6 0.00012 54.9 15.0 187 851-1041 460-685 (1431)
88 cd00197 VHS_ENTH_ANTH VHS, ENT 88.8 2.3 4.9E-05 44.3 9.4 92 295-394 14-114 (115)
89 PF13513 HEAT_EZ: HEAT-like re 88.5 0.46 1E-05 42.6 3.4 52 911-962 3-54 (55)
90 PF12460 MMS19_C: RNAPII trans 87.7 87 0.0019 40.2 24.4 193 857-1055 193-407 (415)
91 PF12231 Rif1_N: Rap1-interact 87.7 70 0.0015 40.5 23.1 314 609-962 1-349 (372)
92 KOG2259 Uncharacterized conser 87.6 19 0.0004 47.3 17.5 268 717-1004 198-513 (823)
93 cd03568 VHS_STAM VHS domain fa 86.9 3.4 7.5E-05 45.1 9.5 74 323-396 35-111 (144)
94 KOG1061 Vesicle coat complex A 86.6 36 0.00078 45.7 19.9 135 323-466 348-520 (734)
95 PF14500 MMS19_N: Dos2-interac 86.3 40 0.00086 40.6 18.9 138 608-751 6-157 (262)
96 KOG0166 Karyopherin (importin) 86.3 68 0.0015 41.9 21.7 362 855-1267 68-458 (514)
97 cd03567 VHS_GGA VHS domain fam 85.7 5.8 0.00013 43.1 10.4 96 294-396 14-117 (139)
98 PF00790 VHS: VHS domain; Int 85.7 4.3 9.3E-05 44.0 9.5 75 322-396 39-119 (140)
99 KOG1020 Sister chromatid cohes 85.6 1.7E+02 0.0036 42.6 25.8 134 1208-1341 1025-1178(1692)
100 KOG1087 Cytosolic sorting prot 85.4 2.8 6E-05 53.8 9.0 97 293-396 13-113 (470)
101 COG1413 FOG: HEAT repeat [Ener 85.4 21 0.00045 44.0 16.6 177 289-501 47-238 (335)
102 KOG1943 Beta-tubulin folding c 84.7 2E+02 0.0042 40.6 38.1 206 276-488 203-471 (1133)
103 smart00288 VHS Domain present 84.4 5 0.00011 43.2 9.2 75 322-396 34-112 (133)
104 KOG4524 Uncharacterized conser 82.9 1.3E+02 0.0028 41.8 22.5 73 334-406 557-630 (1014)
105 PF12074 DUF3554: Domain of un 82.6 32 0.00069 42.7 16.6 155 322-479 19-240 (339)
106 KOG2199 Signal transducing ada 82.6 7.4 0.00016 48.0 10.4 111 862-981 21-134 (462)
107 COG5064 SRP1 Karyopherin (impo 82.6 36 0.00077 41.6 15.7 164 1162-1356 64-268 (526)
108 cd03569 VHS_Hrs_Vps27p VHS dom 82.5 7.2 0.00016 42.5 9.6 96 294-396 17-115 (142)
109 KOG4524 Uncharacterized conser 82.3 1E+02 0.0023 42.6 21.4 65 907-971 560-624 (1014)
110 KOG1924 RhoA GTPase effector D 82.2 61 0.0013 43.4 18.6 36 322-357 208-244 (1102)
111 cd03561 VHS VHS domain family; 82.1 10 0.00022 40.8 10.4 96 294-396 13-113 (133)
112 KOG1058 Vesicle coat complex C 81.4 2.2E+02 0.0047 38.7 23.2 112 1173-1291 320-431 (948)
113 PF04118 Dopey_N: Dopey, N-ter 81.3 35 0.00076 42.0 15.8 147 296-480 22-173 (307)
114 PF12719 Cnd3: Nuclear condens 81.2 16 0.00034 44.7 13.0 125 72-196 3-142 (298)
115 KOG1077 Vesicle coat complex A 81.1 1.1E+02 0.0023 41.1 20.1 343 292-752 81-438 (938)
116 cd03565 VHS_Tom1 VHS domain fa 81.1 8.2 0.00018 42.0 9.4 96 294-396 14-116 (141)
117 PF13251 DUF4042: Domain of un 80.6 36 0.00079 38.8 14.5 153 26-196 1-173 (182)
118 PF11640 TAN: Telomere-length 78.0 12 0.00025 41.4 9.5 83 289-379 8-104 (155)
119 cd03572 ENTH_epsin_related ENT 76.8 8.1 0.00017 41.1 7.4 78 319-396 32-120 (122)
120 PF10274 ParcG: Parkin co-regu 76.1 33 0.00072 39.0 12.4 116 366-481 38-171 (183)
121 COG5096 Vesicle coat complex, 76.1 59 0.0013 44.4 16.6 166 294-474 28-195 (757)
122 KOG1949 Uncharacterized conser 75.3 82 0.0018 42.0 16.7 185 767-1002 182-371 (1005)
123 PF05536 Neurochondrin: Neuroc 74.7 39 0.00084 44.9 14.6 175 305-481 77-268 (543)
124 KOG2025 Chromosome condensatio 74.6 55 0.0012 43.7 15.0 129 1223-1356 54-189 (892)
125 KOG2160 Armadillo/beta-catenin 74.1 70 0.0015 39.7 15.3 181 863-1047 93-288 (342)
126 PF14500 MMS19_N: Dos2-interac 73.9 2.1E+02 0.0046 34.6 21.0 193 289-490 46-253 (262)
127 KOG1967 DNA repair/transcripti 73.6 7.1 0.00015 52.7 7.3 107 290-396 914-1025(1030)
128 PF12719 Cnd3: Nuclear condens 72.5 44 0.00096 40.8 13.5 129 347-475 5-144 (298)
129 KOG1243 Protein kinase [Genera 72.0 11 0.00024 49.8 8.4 171 289-473 258-436 (690)
130 PF12074 DUF3554: Domain of un 71.2 41 0.00088 41.8 13.0 85 894-981 21-113 (339)
131 cd03572 ENTH_epsin_related ENT 71.2 19 0.00042 38.3 8.5 75 399-473 34-118 (122)
132 KOG1059 Vesicle coat complex A 70.1 11 0.00024 49.7 7.6 91 380-476 121-212 (877)
133 KOG0392 SNF2 family DNA-depend 69.8 22 0.00048 49.7 10.5 171 868-1047 748-931 (1549)
134 PF10363 DUF2435: Protein of u 68.8 32 0.0007 34.8 9.2 81 405-487 5-85 (92)
135 KOG1060 Vesicle coat complex A 67.6 4.7E+02 0.01 36.0 30.0 199 288-503 38-244 (968)
136 KOG1062 Vesicle coat complex A 67.6 1.5E+02 0.0032 40.4 16.9 210 856-1072 145-418 (866)
137 KOG1525 Sister chromatid cohes 66.7 27 0.00058 50.1 10.9 148 757-966 258-406 (1266)
138 KOG4825 Component of synaptic 65.5 32 0.00069 43.1 9.8 197 601-823 420-638 (666)
139 PF11640 TAN: Telomere-length 61.7 41 0.00089 37.1 9.3 93 857-949 8-120 (155)
140 COG5096 Vesicle coat complex, 61.7 79 0.0017 43.2 13.3 62 720-788 95-156 (757)
141 KOG1967 DNA repair/transcripti 61.0 16 0.00034 49.7 6.6 122 845-967 898-1026(1030)
142 PLN03076 ARF guanine nucleotid 60.9 2.2E+02 0.0048 43.0 18.5 181 298-478 1150-1380(1780)
143 PF12830 Nipped-B_C: Sister ch 60.6 25 0.00053 40.1 7.5 81 1290-1388 7-87 (187)
144 KOG2149 Uncharacterized conser 60.2 89 0.0019 39.4 12.5 111 329-439 62-177 (393)
145 COG5218 YCG1 Chromosome conden 59.9 49 0.0011 43.0 10.3 65 414-478 58-124 (885)
146 PF05536 Neurochondrin: Neuroc 59.6 5.7E+02 0.012 34.2 25.6 46 772-817 152-197 (543)
147 COG5218 YCG1 Chromosome conden 59.4 1.2E+02 0.0026 39.8 13.5 162 908-1070 104-295 (885)
148 PF13001 Ecm29: Proteasome sta 59.1 5.5E+02 0.012 34.0 31.5 115 358-477 15-137 (501)
149 PF08506 Cse1: Cse1; InterPro 58.3 76 0.0017 40.2 11.9 52 414-469 319-370 (370)
150 PF10363 DUF2435: Protein of u 57.9 40 0.00087 34.2 7.6 77 1292-1368 4-80 (92)
151 KOG0803 Predicted E3 ubiquitin 56.9 1.4E+02 0.003 43.5 14.9 188 291-478 47-267 (1312)
152 PF12765 Cohesin_HEAT: HEAT re 56.5 11 0.00023 32.6 2.8 26 444-469 17-42 (42)
153 PF08389 Xpo1: Exportin 1-like 55.7 95 0.0021 33.0 10.7 127 320-469 21-148 (148)
154 KOG1243 Protein kinase [Genera 55.6 78 0.0017 42.4 11.5 135 322-482 270-406 (690)
155 PF06371 Drf_GBD: Diaphanous G 54.8 26 0.00055 39.3 6.4 89 697-786 91-185 (187)
156 KOG4535 HEAT and armadillo rep 54.3 37 0.00081 43.1 7.9 147 610-787 5-178 (728)
157 PF00514 Arm: Armadillo/beta-c 54.2 18 0.00039 30.5 3.9 29 445-473 12-40 (41)
158 PF10521 DUF2454: Protein of u 53.5 1.4E+02 0.003 36.4 12.7 137 322-459 116-279 (282)
159 PF12830 Nipped-B_C: Sister ch 53.0 1.3E+02 0.0029 34.2 11.8 113 365-477 7-122 (187)
160 PF12397 U3snoRNP10: U3 small 52.8 42 0.0009 35.3 7.2 83 1290-1375 5-95 (121)
161 KOG2149 Uncharacterized conser 52.7 38 0.00081 42.6 7.7 112 856-968 61-173 (393)
162 COG5240 SEC21 Vesicle coat com 52.5 1E+02 0.0022 40.2 11.3 88 105-196 443-554 (898)
163 KOG0803 Predicted E3 ubiquitin 52.0 89 0.0019 45.3 11.9 116 849-965 38-153 (1312)
164 PF08167 RIX1: rRNA processing 51.7 79 0.0017 35.3 9.5 69 289-357 29-100 (165)
165 KOG2160 Armadillo/beta-catenin 51.3 3.8E+02 0.0082 33.6 15.7 195 276-480 76-288 (342)
166 KOG0414 Chromosome condensatio 49.4 1E+02 0.0022 43.5 11.4 110 380-502 975-1099(1251)
167 KOG0168 Putative ubiquitin fus 49.1 2.6E+02 0.0057 38.5 14.6 149 323-476 209-366 (1051)
168 PF12765 Cohesin_HEAT: HEAT re 48.9 14 0.00031 31.8 2.4 25 936-960 18-42 (42)
169 KOG2199 Signal transducing ada 48.5 1.5E+02 0.0032 37.3 11.5 115 351-467 31-157 (462)
170 PF11935 DUF3453: Domain of un 47.7 3.1E+02 0.0067 32.6 14.1 72 334-433 2-73 (239)
171 KOG1822 Uncharacterized conser 47.5 1.1E+02 0.0025 45.1 11.7 224 189-476 23-250 (2067)
172 PF08623 TIP120: TATA-binding 45.3 2.1E+02 0.0045 32.5 11.3 118 362-499 5-142 (169)
173 KOG1020 Sister chromatid cohes 45.2 1.6E+02 0.0036 42.7 12.4 112 355-471 805-918 (1692)
174 PF11865 DUF3385: Domain of un 44.0 1.8E+02 0.0038 32.5 10.7 146 321-477 6-160 (160)
175 PF08167 RIX1: rRNA processing 43.4 1.6E+02 0.0034 33.0 10.2 78 401-478 23-101 (165)
176 KOG0414 Chromosome condensatio 43.3 1.7E+02 0.0036 41.6 11.9 66 985-1050 371-437 (1251)
177 KOG2011 Sister chromatid cohes 42.8 82 0.0018 44.3 9.2 153 590-783 276-430 (1048)
178 PF04826 Arm_2: Armadillo-like 42.6 2.9E+02 0.0063 33.3 12.9 168 292-464 61-252 (254)
179 PF05918 API5: Apoptosis inhib 42.1 4.6E+02 0.01 35.1 15.4 128 324-456 58-189 (556)
180 KOG4653 Uncharacterized conser 41.3 3.3E+02 0.0072 37.6 13.8 145 329-477 728-879 (982)
181 PF05804 KAP: Kinesin-associat 41.1 3.1E+02 0.0067 37.8 14.0 163 309-477 474-652 (708)
182 PF12231 Rif1_N: Rap1-interact 40.6 3.5E+02 0.0076 34.3 13.9 133 909-1041 148-303 (372)
183 PF02854 MIF4G: MIF4G domain; 40.4 5.6E+02 0.012 28.5 15.4 149 316-479 9-161 (209)
184 PF11698 V-ATPase_H_C: V-ATPas 39.0 50 0.0011 35.1 5.0 62 721-786 47-113 (119)
185 PRK14954 DNA polymerase III su 38.6 5.4E+02 0.012 35.1 15.7 372 895-1326 190-618 (620)
186 KOG1517 Guanine nucleotide bin 38.5 93 0.002 43.3 8.4 67 410-476 606-673 (1387)
187 PF00531 Death: Death domain; 38.2 1.2E+02 0.0025 29.3 7.3 78 918-1000 3-82 (83)
188 PF08506 Cse1: Cse1; InterPro 37.7 1.5E+02 0.0032 37.7 9.8 59 976-1035 310-369 (370)
189 PF08064 UME: UME (NUC010) dom 37.1 1.9E+02 0.0042 30.0 9.0 70 415-487 26-96 (107)
190 PF11698 V-ATPase_H_C: V-ATPas 36.9 2.2E+02 0.0048 30.4 9.3 80 884-965 33-115 (119)
191 KOG1525 Sister chromatid cohes 36.3 4.5E+02 0.0098 38.5 14.9 213 1169-1390 258-490 (1266)
192 PF08161 NUC173: NUC173 domain 35.9 1.1E+02 0.0024 35.4 7.7 77 409-486 6-82 (198)
193 KOG2011 Sister chromatid cohes 35.5 6.9E+02 0.015 35.8 16.0 197 296-502 165-380 (1048)
194 KOG1822 Uncharacterized conser 35.2 3.1E+02 0.0067 41.0 12.9 151 325-478 51-210 (2067)
195 PF10521 DUF2454: Protein of u 35.1 88 0.0019 38.0 7.2 84 414-501 90-176 (282)
196 PF04826 Arm_2: Armadillo-like 34.7 4.8E+02 0.01 31.4 13.0 149 327-479 56-210 (254)
197 COG5095 TAF6 Transcription ini 34.1 1.9E+02 0.0041 35.2 9.1 127 362-502 197-340 (450)
198 KOG2137 Protein kinase [Signal 33.6 4.2E+02 0.0092 36.0 13.1 186 290-485 278-469 (700)
199 PF11838 ERAP1_C: ERAP1-like C 33.5 9.4E+02 0.02 29.1 16.6 78 299-379 35-120 (324)
200 cd08318 Death_NMPP84 Death dom 33.5 1.2E+02 0.0026 30.3 6.5 65 918-982 9-75 (86)
201 PF05804 KAP: Kinesin-associat 33.1 3.6E+02 0.0077 37.2 12.8 163 297-464 222-389 (708)
202 PF03224 V-ATPase_H_N: V-ATPas 32.6 1.8E+02 0.0039 35.8 9.4 116 363-481 56-186 (312)
203 PF12030 DUF3517: Domain of un 30.9 2.1E+02 0.0045 35.9 9.4 28 170-197 240-267 (337)
204 KOG1078 Vesicle coat complex C 30.7 1.8E+02 0.0039 39.6 9.0 109 63-195 421-530 (865)
205 PF11864 DUF3384: Domain of un 30.2 1.4E+03 0.03 30.0 22.9 65 145-211 7-74 (464)
206 PF08161 NUC173: NUC173 domain 30.1 1.5E+02 0.0033 34.3 7.6 115 912-1027 17-131 (198)
207 PF06371 Drf_GBD: Diaphanous G 30.0 62 0.0013 36.2 4.5 90 107-196 90-186 (187)
208 PF11864 DUF3384: Domain of un 29.6 5.7E+02 0.012 33.4 13.6 159 653-816 187-356 (464)
209 PF08767 CRM1_C: CRM1 C termin 29.6 3.9E+02 0.0084 33.2 11.5 65 414-478 131-198 (319)
210 KOG3961 Uncharacterized conser 29.6 1.9E+02 0.0042 33.7 7.9 100 846-948 108-210 (262)
211 PF03224 V-ATPase_H_N: V-ATPas 29.5 1.1E+03 0.025 28.8 16.1 155 289-460 109-274 (312)
212 COG5116 RPN2 26S proteasome re 29.4 1.6E+02 0.0035 38.5 8.0 145 1203-1384 522-674 (926)
213 PF08389 Xpo1: Exportin 1-like 29.2 1.4E+02 0.003 31.7 6.8 66 715-783 80-148 (148)
214 cd08317 Death_ank Death domain 28.8 2E+02 0.0043 28.5 7.2 74 918-996 6-82 (84)
215 PF13001 Ecm29: Proteasome sta 28.7 3.4E+02 0.0074 35.9 11.5 109 921-1030 7-120 (501)
216 COG3682 Predicted transcriptio 28.1 71 0.0015 34.2 4.0 42 1641-1705 10-51 (123)
217 cd01670 Death Death Domain: a 27.8 1.1E+02 0.0023 29.4 5.0 64 919-982 2-67 (79)
218 KOG4825 Component of synaptic 26.9 5.6E+02 0.012 32.9 11.7 178 290-473 398-596 (666)
219 COG5098 Chromosome condensatio 26.8 4E+02 0.0086 36.0 10.8 82 932-1049 342-423 (1128)
220 KOG2050 Puf family RNA-binding 26.5 1E+03 0.022 32.0 14.2 165 322-494 234-412 (652)
221 PF08045 CDC14: Cell division 26.2 6.8E+02 0.015 30.3 12.1 87 1278-1365 113-209 (257)
222 cd03562 CID CID (CTD-Interacti 25.7 4.5E+02 0.0097 27.2 9.6 95 369-465 5-99 (114)
223 KOG2549 Transcription initiati 25.6 1.7E+03 0.038 29.7 16.8 180 602-794 208-421 (576)
224 cd08050 TAF6 TATA Binding Prot 25.1 6.9E+02 0.015 31.4 12.7 117 862-1003 187-320 (343)
225 cd08803 Death_ank3 Death domai 25.1 1.6E+02 0.0034 29.5 5.7 75 918-997 6-83 (84)
226 PF01603 B56: Protein phosphat 25.0 7.9E+02 0.017 31.7 13.4 178 290-467 138-319 (409)
227 PF12783 Sec7_N: Guanine nucle 24.9 3.1E+02 0.0066 30.5 8.7 102 865-966 34-147 (168)
228 PF14225 MOR2-PAG1_C: Cell mor 24.4 1.2E+03 0.026 28.3 13.9 178 290-477 69-257 (262)
229 KOG3380 Actin-related protein 24.2 4E+02 0.0088 29.5 8.8 100 873-1025 51-150 (152)
230 PF03965 Penicillinase_R: Peni 24.2 89 0.0019 32.6 4.0 45 1639-1707 5-49 (115)
231 cd08050 TAF6 TATA Binding Prot 24.1 1.7E+02 0.0038 36.6 7.2 107 936-1046 178-302 (343)
232 KOG1949 Uncharacterized conser 23.8 1.5E+03 0.033 31.0 15.2 199 175-457 181-390 (1005)
233 KOG1077 Vesicle coat complex A 23.6 4.7E+02 0.01 35.5 10.7 102 322-428 326-429 (938)
234 cd00256 VATPase_H VATPase_H, r 23.6 1.7E+02 0.0036 37.9 7.0 125 1228-1358 295-423 (429)
235 KOG0567 HEAT repeat-containing 23.3 3.9E+02 0.0085 32.4 9.2 84 1260-1356 191-276 (289)
236 KOG2935 Ataxin 3/Josephin [Gen 22.8 1.5E+02 0.0032 35.1 5.5 104 1203-1327 104-216 (315)
237 cd08306 Death_FADD Fas-associa 22.7 3.5E+02 0.0077 27.0 7.7 66 918-983 4-72 (86)
238 PF04388 Hamartin: Hamartin pr 22.5 4.1E+02 0.0089 36.5 10.7 98 1256-1361 39-141 (668)
239 smart00005 DEATH DEATH domain, 22.4 2.7E+02 0.0059 27.2 6.9 78 915-997 4-85 (88)
240 PF08767 CRM1_C: CRM1 C termin 21.6 9E+02 0.02 30.0 12.7 93 342-435 89-197 (319)
241 KOG2753 Uncharacterized conser 21.5 1.7E+03 0.036 28.1 16.7 132 320-474 79-216 (378)
242 cd06561 AlkD_like A new struct 21.3 8.5E+02 0.018 27.3 11.6 75 1294-1373 108-183 (197)
243 KOG4653 Uncharacterized conser 21.2 1.4E+03 0.031 32.0 14.6 178 293-480 735-924 (982)
244 smart00185 ARM Armadillo/beta- 21.1 1.3E+02 0.0027 24.6 3.6 27 446-472 13-39 (41)
245 PF00945 Rhabdo_ncap: Rhabdovi 20.5 3E+02 0.0066 35.4 8.3 147 1182-1364 181-333 (409)
246 TIGR02289 M3_not_pepF oligoend 20.5 1.1E+03 0.024 31.5 14.1 48 1313-1360 126-173 (549)
247 KOG1837 Uncharacterized conser 20.0 1.3E+03 0.028 34.5 14.5 79 1292-1370 1539-1621(1621)
248 PF12530 DUF3730: Protein of u 20.0 1.5E+03 0.032 26.8 14.3 128 336-468 95-233 (234)
No 1
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-69 Score=692.29 Aligned_cols=770 Identities=26% Similarity=0.299 Sum_probs=646.9
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCM-LPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~-~PgwkesNfqV~~~~leil~~la~~~~~fs~~~ 681 (1871)
+.+....+.++.||.|++++..+..+.+..+..+..+..+++.... .++|++.||||+--.+.++..-..+... +...
T Consensus 7 ~~~~~~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~-~~~~ 85 (815)
T KOG1820|consen 7 SVGTDSELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRD-TKTQ 85 (815)
T ss_pred ccccchhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhcccccccccC-cchh
Confidence 4455555889999999999999999998866666666777776643 4789999999999998888843221111 2222
Q ss_pred hhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000200 682 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1871)
Q Consensus 682 ~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~ 761 (1871)
+-.++ .|+.|.+-...+..+++.+++.....+++..++..+..+++|++..+++.|+...+.+||+.....+.+++
T Consensus 86 ~~~~i----~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~D~nvr~~~~~l~v~ 161 (815)
T KOG1820|consen 86 SLLRI----GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLADKNVRSEASKLLVE 161 (815)
T ss_pred HHHHH----HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccccccccchhhcccchh
Confidence 22233 78999999999999999999999999999999999999999999999999999999999998888888898
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCC
Q 000200 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 841 (1871)
Q Consensus 762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~ 841 (1871)
+.+-.|.++.+...|.++..+++++..|.|.....|+.+.+|...+....|++++..+....|.|+++...+........
T Consensus 162 i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 162 IYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred hhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 88877899999999999999999999999999999999999999999999999999888888888877655544333445
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHH
Q 000200 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 921 (1871)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~ 921 (1871)
-|++||+||+++|++.|.++|.|++||+|+||||.+.++|+++++.++.+.+|++...++.|++|+|.|++++|+.||+.
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ 321 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILEL 321 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999875578999889999999999999999999999999999
Q ss_pred HHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000200 922 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1871)
Q Consensus 922 lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l 1001 (1871)
||.+||..|.+|++.++|.++.+|+|+|+.+|++++.|+|+|+++++++.+.++|.++|+++ ||+.|.+++.|+.++|
T Consensus 322 ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 322 IAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred HHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 7999999999999999
Q ss_pred ccCCC---C-cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCC---
Q 000200 1002 TGLSG---F-PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--- 1074 (1871)
Q Consensus 1002 ~~~~~---~-~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~--- 1074 (1871)
..+.. . .....+++.++.+.+|++.|||++|.++++++|+++|++.+.+.+.++++. .+....++.++..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~---~~~~~~E~~~p~~~~~ 476 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ---DIKPKEEKLKPLLHFL 476 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc---hhhhhhhhcccccccc
Confidence 98873 2 234555555888999999999999999999999999999999999999987 3344445555432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHH----hh
Q 000200 1075 VSMGPTSKSSSKVPKSASNGVSKH-----GNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE----RM 1145 (1871)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~----~~ 1145 (1871)
..+.+++++..+.....+...+.. ....+++...|.+.+...+. .. ....++.+.. .+..+++|. ++
T Consensus 477 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~r 552 (815)
T KOG1820|consen 477 AAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSS-RK-IPEAAEAPKL--QLSLKEQRVVLGTRR 552 (815)
T ss_pred ccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCcccccccc-cC-Ccchhhcccc--ccccccchhhhhhhh
Confidence 222222222222111111000000 00001111112221111100 00 0011112212 456788886 56
Q ss_pred hhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccch
Q 000200 1146 VVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNT 1225 (1871)
Q Consensus 1146 ~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~ 1225 (1871)
.+.+|++..|..+..+. |...+...+...|||.||+.|.++++.++.....+.++..++.|++++|+++||+++|+
T Consensus 553 ~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~lr~~~~~~ 628 (815)
T KOG1820|consen 553 KVSPKTVVAPVDDKKEP----SKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVLRFEETNE 628 (815)
T ss_pred ccCccccccchhhhhcc----cccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHHHhhcccH
Confidence 78889998887666655 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCCh
Q 000200 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNN 1305 (1871)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~ 1305 (1871)
+++.+.++|+...|+.+...+|.++..|+..|.|++..+.|..+|.+|+.++.|.+....++...++.+++.+++..||.
T Consensus 629 ~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~ 708 (815)
T KOG1820|consen 629 ALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKER 708 (815)
T ss_pred HhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccCCHHHHhhHHHHH
Q 000200 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1385 (1871)
Q Consensus 1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer~ 1385 (1871)
++|.||++.+.+++..-|.....-.+++..|+-...++|..+|+++.+++...|.+.|+.+|++.+.+.+.|+++++.||
T Consensus 709 ~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 788 (815)
T KOG1820|consen 709 EIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMF 788 (815)
T ss_pred hhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhc
Confidence 99999999999999999987644456789999999999999999999999999999999999999999999999999999
Q ss_pred HHhHH
Q 000200 1386 KWKVR 1390 (1871)
Q Consensus 1386 kr~~~ 1390 (1871)
++..+
T Consensus 789 ~~~~~ 793 (815)
T KOG1820|consen 789 PKERR 793 (815)
T ss_pred Ccccc
Confidence 98755
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-56 Score=568.80 Aligned_cols=754 Identities=19% Similarity=0.231 Sum_probs=542.3
Q ss_pred ccCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hhHHHHH
Q 000200 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDA 97 (1871)
Q Consensus 19 rl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~-~~~~~~~ 97 (1871)
++..++||.|+++|.. +++|+|+.+|+.+ .++..|+..++...... -...+-.
T Consensus 13 ~l~~~~w~~~~~~~~q-------------------------l~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~ 66 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQ-------------------------LLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLS 66 (815)
T ss_pred hhhhhhhhhhHHHHHH-------------------------HhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeecc
Confidence 3777888888777653 5578899999999 99999998876644333 2234556
Q ss_pred HHHhhhcC-ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhh
Q 000200 98 IAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPEL 176 (1871)
Q Consensus 98 lveK~L~~-r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~l 176 (1871)
..++||.. |+.+.+..+++.+.....++...+++.+.+.++-|.||.+++++..+..++.+||...++++.+++.++.+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 67 FGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred chhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 67899985 88888888898888888889999999999999999999999999999999999999999999999999999
Q ss_pred hcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHhhhhhhcccCCC
Q 000200 177 FDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVG 255 (1871)
Q Consensus 177 f~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~~~~~~~~ 255 (1871)
+ |+|||.++.+|+++||||+|.. .+..++..--+.++.++...+.+.... ....|.+-+.+..........+...
T Consensus 147 ~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 A---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred c---ccccchhhcccchhhhhhcCCC-cCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 9 9999999999999999999974 667776556666677776666654321 1111111111110000000000000
Q ss_pred CCCC--CCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCC--CCCCChHHHHHHHH
Q 000200 256 PGPS--EESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLK 331 (1871)
Q Consensus 256 ~~~~--~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pK--i~~~dy~eL~~~Lk 331 (1871)
..+. ..........+|.||+++||||++|++ .+|.+.|.++|||+|+||||.+.+++++++ +..+.|+.+...++
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~k 301 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLK 301 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcC-hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHH
Confidence 0000 001111122379999999999999999 589999999999999999999999998888 55677777777888
Q ss_pred HHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000200 332 KLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTS 411 (1871)
Q Consensus 332 k~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~a 411 (1871)
.+..|+|++||++|++||+.||++||..|.+|++.++|.+|++|||||+.+++++++|+|+|+.. +.++++.+.|.++
T Consensus 302 i~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 302 IRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEA 379 (815)
T ss_pred HhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHhhCCh-hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000200 412 VKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1871)
Q Consensus 412 l~~KnP~vk~etl~~L~r~l~~~~~-~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1871)
++||||++|.+|+.|+.||+...+. .+....++.++|.++++.+|++++||+||.++++++|+++|++.++.+|.++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDK 459 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc
Confidence 9999999999999999999998763 333356789999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchh-hhhhhhhhcccCCCC-CCCCCCCCCCCCCCCCCCCCC
Q 000200 491 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS-FVRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKDG 568 (1871)
Q Consensus 491 ~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p-~~~~~~~~k~~~~~~~~~~~~ 568 (1871)
.-++.+.|.+...-.....+.++..++. +..+.+. .++...+......++ ++.+|.... ...++...+..
T Consensus 460 ~~~~~~~E~~~p~~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~s-s~~~~~~~~~~ 531 (815)
T KOG1820|consen 460 QDIKPKEEKLKPLLHFLAAPKEKSSAPD-------PQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLS-SANSSRKIPEA 531 (815)
T ss_pred chhhhhhhhccccccccccCCCcCCCCC-------ccccccceecccccccCCCCCCCccccCCCccc-ccccccCCcch
Confidence 7566666655431000000000000110 0000000 000000000000000 000000000 00000000000
Q ss_pred --CCCcccccCCCCCCC-------CC-CCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccch
Q 000200 569 --SGKQETSKLTEAPED-------VE-PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQ 637 (1871)
Q Consensus 569 --~~~~~~s~~~~~~~~-------~~-~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~ 637 (1871)
.+....+ ..+.... .. ..-...+|..+.+...++......+++.|++...++.+.+...-.. ......
T Consensus 532 ~~~~~~~~~-~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~ 610 (815)
T KOG1820|consen 532 AEAPKLQLS-LKEQRVVLGTRRKVSPKTVVAPVDDKKEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTS 610 (815)
T ss_pred hhccccccc-cccchhhhhhhhccCccccccchhhhhcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccch
Confidence 0000000 0000000 00 0112346666667777888889999999999999999999855444 333334
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC----CCccchhhhccchhhccccch--hhhHHHHHHHHHHH
Q 000200 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK----FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSE 711 (1871)
Q Consensus 638 ~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~----fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE 711 (1871)
..++++.|+. -+|.|+|-++..+.++++........- -+........+-+..+.|..+ .+.....+.....+
T Consensus 611 ~~~~~l~~~~--lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~ 688 (815)
T KOG1820|consen 611 IQDLLLEWLV--LRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFE 688 (815)
T ss_pred HHhhhhHHHH--HHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhh
Confidence 4567788876 368999999999999998876654211 111112222233333555554 45666667777888
Q ss_pred hhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 712 AVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 712 ~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+++..-....+++.+ ..|+-.++.+|+..+...+..-|+..+...-+.....- +.......+|..+.+.+..+|.+.|
T Consensus 689 v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (815)
T KOG1820|consen 689 VLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIAL-LVKASDGKSSSKVKKTSWKPFDFLP 766 (815)
T ss_pred hccccccchhhHhhc-cccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccc-cccccchhhhhhhhccccccccccc
Confidence 888888888888885 79999999999999999999999876555444444333 3677888999999999999999999
Q ss_pred chhHhhhhcchHHHHHHHHHHHhcCCC
Q 000200 792 PDIKGFLADVKPALLSALDAEYEKNPF 818 (1871)
Q Consensus 792 ~~l~~~l~dlkpall~~ie~EF~K~~~ 818 (1871)
++++.......+.+.+.++..|.+-..
T Consensus 767 ~~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 767 DPSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred chHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999999999987543
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.84 E-value=3e-20 Score=213.57 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=149.7
Q ss_pred CCCCchhhhhhhhccChHHHHHHHHHHHHhhhcC--CCCCCChHHHHH----HHHHHhccccHHHHHHHHHHHHHHHHHh
Q 000200 283 TPLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVCR----TLKKLITDVNIAVAVEAIQAIGNLARGL 356 (1871)
Q Consensus 283 ~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~p--Ki~~~dy~eL~~----~Lkk~l~DsNv~vv~~A~~~i~~lA~gL 356 (1871)
..+. +.|+.+..+.+|++|.+||+.|..++... .-..++|.+.++ .+.+.+.|.|..|+..|+.|++.|+..|
T Consensus 6 ~~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 6 EEIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp GGS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455 47878888999999999999999987644 222233444443 6667888999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-hhhh-HHHHHHHhhcCCchhHHHHHHHHHHHHhhC
Q 000200 357 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 357 r~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l~~~-~e~i~~al~~KnP~vk~etl~~L~r~l~~~ 434 (1871)
+..|.+|+..++|++|++++++|..|++++..||++++.+ | + ...+ .+.+..+++||||++|.+++.||..++...
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~-~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-C-SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-C-CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997 4 5 5666 788889999999999999999999999987
Q ss_pred C--hhHHH--HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHH
Q 000200 435 S--KAAVL--KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 496 (1871)
Q Consensus 435 ~--~~~~~--~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI 496 (1871)
+ ...+. ..++.+++.+.++++|++++||++|..++..+++++|++. ..+++.||+..++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 7 33332 2357899999999999999999999999999999999986 566799998777655
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.70 E-value=1.4e-16 Score=183.20 Aligned_cols=208 Identities=21% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc----hHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE----LFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge----L~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
.|...|.++..+.||+.|.|||+.|..++....+.-.+..+.+ +...+...+.|.|..|+..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666777999999999999999999985311111111222 223666899999999999999999999999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhh-hHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1006 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~-~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~ 1006 (1871)
.|+.|+..++|.++++++|+|+.+|++|.+||++++..++ ...+ ++.+...+.+. ||..|.+.+.||...+...+.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 66777777765 799999999999999988872
Q ss_pred -Ccc------hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHH
Q 000200 1007 -FPD------AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1063 (1871)
Q Consensus 1007 -~~~------~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i 1063 (1871)
... ...+++.+..+|+|.+++||++|..++..+++++|+.+ ...++.|+|..+..+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 111 24566678889999999999999999999999999997 445577777665543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2e-07 Score=122.74 Aligned_cols=515 Identities=17% Similarity=0.195 Sum_probs=345.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~ 366 (1871)
.+...+-|+.=..|++|=+.++.+...++ +...|..++. -+|-.+-++|+=.+..+..++=+....- ...
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35556777777889999999988776555 6788888988 8888999999988888888754444433 223
Q ss_pred hHHHHHHH-hccCCHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 367 LLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 367 ~~~~lLek-lKEKK~~V~eAl~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
+-..||+. ++|.+++||.++...+-.++..-- -.-.+++.-+..+.++.||+.|+-.+..|.-+....+ ..+...++
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~-~~~~~~~~ 158 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG-NTLQPHLD 158 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-cccchhHH
Confidence 44455544 699999999999999999998610 0233566777778899999999888887776665433 22335668
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 445 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
.+.+.+.+|++|.+..||-+|..+++++...+. ++...+....+=|.-..-..+.+.-
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~--------------------- 217 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD--------------------- 217 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc---------------------
Confidence 899999999999999999999999999988774 2222222221111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
..+++
T Consensus 218 ------------------------------------------------------------------~d~~~--------- 222 (1075)
T KOG2171|consen 218 ------------------------------------------------------------------GDDDA--------- 222 (1075)
T ss_pred ------------------------------------------------------------------cchHH---------
Confidence 00000
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD-QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT------- 675 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~-~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~------- 675 (1871)
-..+++.|.+.++.....- ...+-++.+-..--+=+|-|=-+....|+++..+++.++
T Consensus 223 --------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~ 288 (1075)
T KOG2171|consen 223 --------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA 288 (1075)
T ss_pred --------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence 0112222333333321111 111112222111112245555677788888888887643
Q ss_pred CCCccchhhhccchhhcccc--------------chhhhHHHHHHHHHHHhhchHhHHHHHHHhh---hhcCChhhHHHH
Q 000200 676 KFPKKCVVLCLLGISERVAD--------------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEG 738 (1871)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD--------------~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~---~~~KnPKv~~e~ 738 (1871)
.+..+.+..++.-.+|-..| --....|.++|-.++=..|++.|+..+++.+ ..+-++|-|..+
T Consensus 289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 24445555555555555555 1245677888999999999999888776644 578899999999
Q ss_pred HHHHHHHHHHhccCc-cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh-hcchHHHHHHHHHHHhcC
Q 000200 739 ILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKN 816 (1871)
Q Consensus 739 l~wl~~ai~eFG~~~-~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l-~dlkpall~~ie~EF~K~ 816 (1871)
|.-++.+-+-.+=.. =++..+++.+... |.++.|-||-+|.+.+|-|---++|.+-.+. +-+.|++...++..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~---- 443 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST---- 443 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc----
Confidence 999999887443111 1566888888884 9999999999999999999999999887666 66777777766643
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc-ccCCCCCCccc
Q 000200 817 PFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGE 895 (1871)
Q Consensus 817 ~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a-nkrI~p~~~ge 895 (1871)
++ . ++-.-|--++-...+++ +.-|.|=+ ..
T Consensus 444 --~~-------~---------------------------------------rV~ahAa~al~nf~E~~~~~~l~pYL-d~ 474 (1075)
T KOG2171|consen 444 --QN-------V---------------------------------------RVQAHAAAALVNFSEECDKSILEPYL-DG 474 (1075)
T ss_pred --Cc-------h---------------------------------------HHHHHHHHHHHHHHHhCcHHHHHHHH-HH
Confidence 11 1 12222222222233332 23344543 55
Q ss_pred hHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccC----chhHHHHHHHHHHHHHHhccch
Q 000200 896 LFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN----KKHMRECTLTVLDAWLAAVHLD 970 (1871)
Q Consensus 896 L~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~----K~~vR~aa~~alda~~~~~gl~ 970 (1871)
|+.-+=.+| .-.++.++.+++..|+.+|.|++.+|.+|...++|-+...|... ...+|....+|+..+..++|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 666333334 56677888899999999999999999999999999998887654 4688899999999999999988
Q ss_pred hhhHHH
Q 000200 971 KMVPYV 976 (1871)
Q Consensus 971 ~~~~~i 976 (1871)
.|.|..
T Consensus 555 ~F~~~a 560 (1075)
T KOG2171|consen 555 KFLPLA 560 (1075)
T ss_pred hhhHhH
Confidence 888753
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.1e-08 Score=131.59 Aligned_cols=396 Identities=16% Similarity=0.220 Sum_probs=259.4
Q ss_pred chhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhc--CChhhHHHHHHHHHHHHhhc---chh-hH
Q 000200 56 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE---AVD-VF 129 (1871)
Q Consensus 56 l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~--~r~~tk~~a~e~~l~~vE~e---~~~-~v 129 (1871)
++-.-+++.|..-+|.|+-.+..+.+.-+....-+- .-+-++..+|++ +++ .|-.|...+-.|++.- +.+ .-
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~ 199 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDK 199 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHH
Confidence 333458999999999999988887766444322222 234567799998 466 7776666666666542 222 22
Q ss_pred HHHHHH--------HhhccCchhHHHHHHHHHHHHHhhCCCccC--hhHHHhhchhhhccc--ChhHHHHHHHHHHHHHH
Q 000200 130 LDVMEK--------AIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLELCR 197 (1871)
Q Consensus 130 ~e~ll~--------~~~~K~PKvvaaai~~l~~~l~~FG~~vv~--~K~ilk~l~~lf~~~--dk~VR~ea~~L~vely~ 197 (1871)
+..++| ....-+-++...++.++.+++..++- .+. +..|++..=++..+. |..+|.-|..+++.+-+
T Consensus 200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 233444 33344456667888888888888774 443 566788888887765 67899999999999988
Q ss_pred hhCCchhhH--HHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCcccc
Q 000200 198 WIGKDPVKT--ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYEL 275 (1871)
Q Consensus 198 wlG~~~lk~--~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl 275 (1871)
+ -|...|- .+.+.|=++.++....+-. ...-.+ +...++++.-+||.+
T Consensus 279 ~-Ap~~~k~~~~~~~~lv~~~l~~mte~~~----------------------------D~ew~~-~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 279 Y-APAMCKKLALLGHTLVPVLLAMMTEEED----------------------------DDEWSN-EDDLDEDDEETPYRA 328 (1075)
T ss_pred h-hHHHhhhchhhhccHHHHHHHhcCCccc----------------------------chhhcc-ccccccccccCcHHH
Confidence 8 2211111 1112222232222110000 000000 000011111233332
Q ss_pred -----------CCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHH
Q 000200 276 -----------VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAV 343 (1871)
Q Consensus 276 -----------~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~ 343 (1871)
+++.-|++.+= +-+...+.|.+|++|+.+|-+|-.+.. ..+.-.+....++.+.-.-+.|..-.|--
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~ 407 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRY 407 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 22333443332 345566799999999999999988763 55555567888999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHH--HHHHHHHHHHHHHHhcCCC------hhhhHH-HHHHHhhc
Q 000200 344 EAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAESLTQTLQAMHKAGCLN------LVDVVE-DVKTSVKN 414 (1871)
Q Consensus 344 ~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~--V~eAl~~aLda~~~~~~~~------l~~~~e-~i~~al~~ 414 (1871)
.|+++||.+++-+.+.|.+|.+..+|+.|--..|.-.+ |..++..||+.++.. |.. |+.+++ -+...+++
T Consensus 408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~ 486 (1075)
T KOG2171|consen 408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQS 486 (1075)
T ss_pred HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888777777666555 445666677766665 533 445555 33345567
Q ss_pred CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC----CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 415 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 415 KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~----Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
.+|.++.++..=|+..-.... ..+.++.+.++|.+.+.|. +..-++|-...+|++.+-..||.+.+.++.+.
T Consensus 487 ~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 487 SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 789999988887776554332 3345677888998888873 34466777788999999999998777777653
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.36 E-value=1.9e-07 Score=119.07 Aligned_cols=876 Identities=18% Similarity=0.213 Sum_probs=458.7
Q ss_pred cccccCcCchhHHHHHHHHHHHHhhh----cCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCDS----ITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~----~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1871)
|-|++.++.=-=|--|-.+|.+..+. +.+++ +.+....+-|.+.|+|--+|.-|+.++--++.+-.. ...
T Consensus 10 LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dS---e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~l 83 (1233)
T KOG1824|consen 10 LLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDS---ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQL 83 (1233)
T ss_pred HHHHccCCCcchhhhhHHHHHHHHHhhhhhccccc---hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHH
Confidence 44555555555677777777776652 22222 333334455789999999999999998766654322 224
Q ss_pred hHHHHHHHHhhhcCChhhHH-HHHHHHHHHHhhc-c-----hhhHHHHHHHHhhccCch------hHHHHHHHHHHHHHh
Q 000200 92 KEVCDAIAAKCLTGRPKTVE-KAQAVFMLWVELE-A-----VDVFLDVMEKAIKNKVAK------AVVPAIDVMFQALSE 158 (1871)
Q Consensus 92 ~~~~~~lveK~L~~r~~tk~-~a~e~~l~~vE~e-~-----~~~v~e~ll~~~~~K~PK------vvaaai~~l~~~l~~ 158 (1871)
+.++..|..+.++|+-..+. -|+...+...++- . ...|+.-+.+-+..-+-| +...++..|...+..
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 44555555666666444444 3555555555553 1 135667777777777777 899999999999999
Q ss_pred hCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH---HHhhhch-HHHHHHHHHHHHhc------
Q 000200 159 FGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT---ILFEKMR-DTMKKELEVELVNV------ 227 (1871)
Q Consensus 159 FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~---~L~~~Lk-p~q~keLe~efek~------ 227 (1871)
||.=..+ =+.|++.+..-++..-..||.-|...++-+-.+.+.++... .|.++|- +.|..++...+.-+
T Consensus 164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ 243 (1233)
T KOG1824|consen 164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ 243 (1233)
T ss_pred hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 9984444 34588888888999999999999999998888887543222 2223332 23444443333221
Q ss_pred CCC--------CCCcc--hhhhHH-hHhhhh-------hh----cccCCC---------------CCCCCCCCCCCCCCC
Q 000200 228 SGT--------ARPTR--KIRAEQ-DKELGQ-------EL----ISEDVG---------------PGPSEESTADVPPEI 270 (1871)
Q Consensus 228 ~~~--------~~P~R--~~Rs~q-~~~~~~-------~~----~~~~~~---------------~~~~~~~~~~~~~~i 270 (1871)
.|. ..|-- |.-+.+ +..+-. +. .+.+.. =++.=..+ .++|-
T Consensus 244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd--~~eDe 321 (1233)
T KOG1824|consen 244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD--TEEDE 321 (1233)
T ss_pred hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC--Cccch
Confidence 111 01100 110000 000000 00 000000 00000000 00111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 349 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i 349 (1871)
|...+-|..| .+ .++-|+.=++-.||.|++|..-+..+++ ..-.-+.=|-.+...|-.+++|--=+|.+..+...
T Consensus 322 d~~~~ed~eD-de---~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 322 DAMFLEDEED-DE---QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhcccc-ch---hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 1111111111 00 0244666778889999999999988654 33333444778888888888877777777666665
Q ss_pred HHHHHHhcc----------------ccc-----cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh--cC--CChhhh
Q 000200 350 GNLARGLRT----------------HFS-----GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GC--LNLVDV 404 (1871)
Q Consensus 350 ~~lA~gLr~----------------~F~-----~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~--~~--~~l~~~ 404 (1871)
-.+-+--|. +|. .....++..|=..++||+.--+.....-|.++... ++ -+++.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~sl 477 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSL 477 (1233)
T ss_pred HHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccccc
Confidence 555443331 122 22344566666678888876555555555555543 11 235567
Q ss_pred HHHHHHHhhcCC--chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh----------------------------
Q 000200 405 VEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---------------------------- 454 (1871)
Q Consensus 405 ~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l---------------------------- 454 (1871)
+..|.-.+.+|+ .+.|.+.+.|+.-.+..+++..+...++.+.|+++.++
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 778888888888 68999999999999987765554333333333322222
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000200 455 ----------------------NDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1871)
Q Consensus 455 ----------------------~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1871)
+|+|.+||++|..|+|-++-.+|. .+...+...=++-.+++.+-+-..
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~nEiTRl--------- 627 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLGNEITRL--------- 627 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHhchhHHH---------
Confidence 677888888888888888888772 233222222122222222111000
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCH-
Q 000200 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL- 591 (1871)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~- 591 (1871)
++++.. ..+. ..+. ...+++
T Consensus 628 -------------------~AvkAl--t~Ia-----------------------------------~S~l---~i~l~~~ 648 (1233)
T KOG1824|consen 628 -------------------TAVKAL--TLIA-----------------------------------MSPL---DIDLSPV 648 (1233)
T ss_pred -------------------HHHHHH--HHHH-----------------------------------hccc---eeehhhh
Confidence 000000 0000 0000 000110
Q ss_pred -HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH
Q 000200 592 -EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEVINY 669 (1871)
Q Consensus 592 -ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~Pg-wkesNfqV~~~~leil~~ 669 (1871)
.++- +++..-+...+-+-|++-+..+.+.++...... ..+.+=-.|..-|+ ..||-.+|-+..+.+++.
T Consensus 649 l~~il--------~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 649 LTEIL--------PELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 233344444445556665555555554432211 22333334445566 488888988888888888
Q ss_pred HHHhcCCCCccchhhhccch-------------------------------------hhccccchhh-------------
Q 000200 670 LAATATKFPKKCVVLCLLGI-------------------------------------SERVADIKTR------------- 699 (1871)
Q Consensus 670 la~~~~~fs~~~~~~~l~~l-------------------------------------veKlgD~K~r------------- 699 (1871)
++...+..--..-..+++.+ ++.+..++-.
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~s 799 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYS 799 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHH
Confidence 77653321000001111111 1111111100
Q ss_pred -hHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHH
Q 000200 700 -AHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNA 778 (1871)
Q Consensus 700 -~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~a 778 (1871)
+.....|+..|...+...+..-+...+..+-|-.++.=|+.-+++.=..++. ..-..+-+.+.++ |+|+|..|+.|
T Consensus 800 iA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f~sp~edvksA 876 (1233)
T KOG1824|consen 800 IAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-FNSPSEDVKSA 876 (1233)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-cCCChHHHHHH
Confidence 1111122222222222222222222222222333333333333333222222 2223444455666 99999999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc------c---cccccCCCCCCCCCCCCccc
Q 000200 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV------R---ASESTSSVSSGGSDGLPRED 849 (1871)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~------r---~~~~~~~~~~~~~d~lprvD 849 (1871)
|--.||.+-- |. +-.|| |-++.+|+.+ |.|+- + ..++. +-..|-+|
T Consensus 877 As~ALGsl~v--gn-l~~yL----pfil~qi~sq-----------pk~QyLLLhSlkevi~~~sv-------d~~~~~v~ 931 (1233)
T KOG1824|consen 877 ASYALGSLAV--GN-LPKYL----PFILEQIESQ-----------PKRQYLLLHSLKEVIVSASV-------DGLKPYVE 931 (1233)
T ss_pred HHHHhhhhhc--Cc-hHhHH----HHHHHHHhcc-----------hHhHHHHHHHHHHHHHHhcc-------chhhhhHH
Confidence 9999998753 32 22333 4455555543 22210 0 00000 00111111
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchhHhHHHHHHHHHHHHHHhcC
Q 000200 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLGAVASAMG 927 (1871)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl--~DsNk~lv~~al~ii~~lA~amG 927 (1871)
+|=.-|.+.++...==+|.=--|=+.+++ .|.| ..|...|+.++ .++|-.....+ .+--.-+-=-
T Consensus 932 ---~IW~lL~k~cE~~eegtR~vvAECLGkL~-----l~ep---esLlpkL~~~~~S~a~~~rs~vvs--avKfsisd~p 998 (1233)
T KOG1824|consen 932 ---KIWALLFKHCECAEEGTRNVVAECLGKLV-----LIEP---ESLLPKLKLLLRSEASNTRSSVVS--AVKFSISDQP 998 (1233)
T ss_pred ---HHHHHHHHhcccchhhhHHHHHHHhhhHH-----hCCh---HHHHHHHHHHhcCCCcchhhhhhh--eeeeeecCCC
Confidence 12222344454443333444334444443 2233 56899999988 56665443322 1111111112
Q ss_pred hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC
Q 000200 928 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1005 (1871)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~ 1005 (1871)
++...+.+..+..++..|.|--..||..|+.+++.++--=. ...++|++...|-+.. ..|+|+..=.. +.
T Consensus 999 ~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eT---kvrkelIreVe-----MG 1070 (1233)
T KOG1824|consen 999 QPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSET---KVRKELIREVE-----MG 1070 (1233)
T ss_pred CccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhh---hhhHhhhhhhc-----cc
Confidence 46778899999999999999999999999999998764322 3566666666665432 25666654332 11
Q ss_pred CCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1006 GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1006 ~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
| +.+--|-.-|+||+|.+++-+++-
T Consensus 1071 ----------P-FKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1071 ----------P-FKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ----------C-ccccccchHHHHHHHHHHHHHHHH
Confidence 1 234457788999999999987764
No 8
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.97 E-value=2.7e-08 Score=120.04 Aligned_cols=372 Identities=17% Similarity=0.193 Sum_probs=245.9
Q ss_pred hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCc--cChhH----HHhhchhhhcccCh-hHHHHHHHHHHHHHHhh
Q 000200 127 DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKR----ILKMLPELFDHQDQ-NVRASSKGLTLELCRWI 199 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~v--v~~K~----ilk~l~~lf~~~dk-~VR~ea~~L~vely~wl 199 (1871)
+.+.+.+-.-...-.||-+..-...+.....+|-... ...++ +-|+.|-.|.-..- .+-...-..+.+++--.
T Consensus 101 ~~~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm~~~~~d~~~~~l~~~~v~s~l~~~~~~n 180 (516)
T KOG2956|consen 101 LKVCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKMFPWMFDPRIENLLTPHVESSLCSLFALN 180 (516)
T ss_pred HHHHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhccccccCchhhccccHHHHHHHHHHHHHH
Confidence 3455555555556679999999999999988876533 22333 55666655554332 23334444555555555
Q ss_pred CCchhhHHHhhhchHHHHHHHHHHHHhcC--CCCCCcchhhhHHhHh----------hhhhhcccCCCCCCCCCCC----
Q 000200 200 GKDPVKTILFEKMRDTMKKELEVELVNVS--GTARPTRKIRAEQDKE----------LGQELISEDVGPGPSEEST---- 263 (1871)
Q Consensus 200 G~~~lk~~L~~~Lkp~q~keLe~efek~~--~~~~P~R~~Rs~q~~~----------~~~~~~~~~~~~~~~~~~~---- 263 (1871)
-.+ + +.+++.+.|.+..---+-.+... ++.++.+-.+...... ...+........-...+..
T Consensus 181 ~a~-f-ss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~ 258 (516)
T KOG2956|consen 181 NAD-F-SSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNE 258 (516)
T ss_pred hhc-h-HhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChhhcccCCCccccCccccccccc
Confidence 554 5 45668888876432222233322 2223323111111000 0000000000000000000
Q ss_pred -----CCCCCC-CCccccCCccccc-CCCCchhhhhhhhc-cChHHHHHHHHHHHHhhhcCCC--CCCChHHHHHHHHHH
Q 000200 264 -----ADVPPE-IDEYELVDPVDIL-TPLEKSGFWEGVKA-TKWSERKDAVAELTKLASTKRI--APGDFTEVCRTLKKL 333 (1871)
Q Consensus 264 -----~~~~~~-iDp~dl~~~vdIl-~klpk~~f~~~l~s-~KWkeRkEaLe~l~~l~~~pKi--~~~dy~eL~~~Lkk~ 333 (1871)
..+..- -|+.|-..|..+. +.++ .+...++.. -+=.+|++||.+|.+++-..-+ ....|++|.-.+=.+
T Consensus 259 ~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v-~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~Ev 337 (516)
T KOG2956|consen 259 TERLSRLEEYSTDDSMDQLTPNSVDQSALV-ADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEV 337 (516)
T ss_pred hhhhhhchhhccCcchhhCCCCCcchhHHH-HHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 000000 1223333343332 1333 245566644 4889999999999987644433 356699999999999
Q ss_pred hcc-ccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh
Q 000200 334 ITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 412 (1871)
Q Consensus 334 l~D-sNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al 412 (1871)
++| .+-..-.+|+++|+.+++.-.+.|..|..+.+..+|+.-||.-..|...+.+++.....+ ..++ .++.-|...+
T Consensus 338 L~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las-~~P~-~~I~~i~~~I 415 (516)
T KOG2956|consen 338 LSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS-HLPL-QCIVNISPLI 415 (516)
T ss_pred HccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-hCch-hHHHHHhhHH
Confidence 998 899999999999999999999999999999999999999999887777666665555544 2344 4455566555
Q ss_pred hcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHH
Q 000200 413 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 492 (1871)
Q Consensus 413 ~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~k 492 (1871)
.+---+.-.-+++.++|.++..+...+..++.+++|.+++..+-+...||++|.-||.++...+|++.|.|+|++|...|
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHH
Confidence 55444555577889999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 000200 493 RNKLSEMIAGS 503 (1871)
Q Consensus 493 k~KI~e~~~~~ 503 (1871)
++-|+=|++.+
T Consensus 496 ~~LlqlYinRa 506 (516)
T KOG2956|consen 496 LNLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.9e-05 Score=98.62 Aligned_cols=350 Identities=20% Similarity=0.268 Sum_probs=217.8
Q ss_pred cCCCCH-HHHHHHHHHHHHHHHHcChhhhhh-hhHHHHHHHHhhhc----CChhhHHHHHHHHHHHHhhcc------hhh
Q 000200 61 VADSNA-PVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT----GRPKTVEKAQAVFMLWVELEA------VDV 128 (1871)
Q Consensus 61 v~DsN~-~aqek~leal~~~l~~a~~~~~~~-~~~~~~~lveK~L~----~r~~tk~~a~e~~l~~vE~e~------~~~ 128 (1871)
+-|++. ..||-++.||....+-+....-+- ....+..++-|-|- .-|+.+..|+.|+-.||=+-. .+.
T Consensus 136 ~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~ 215 (885)
T KOG2023|consen 136 LLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDK 215 (885)
T ss_pred HhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHH
Confidence 445555 678888888887776542211110 11234444555442 469999999999988886533 245
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC-CccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchhh
Q 000200 129 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVK 205 (1871)
Q Consensus 129 v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~-~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~w-lG~~~lk 205 (1871)
++|.+....+.-+|-|...-..++.-+ -+|-+ +.+| +..|++++-..-.+.|.+|-=||-.+-..+.-- +-+..++
T Consensus 216 Fle~lFalanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 216 FLEILFALANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 556555555556675554444444333 34555 6665 788999999999999999998888775544311 1223455
Q ss_pred HHHhhhchHHHHHHH-----HHHHHh-cCC---------CCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 000200 206 TILFEKMRDTMKKEL-----EVELVN-VSG---------TARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEI 270 (1871)
Q Consensus 206 ~~L~~~Lkp~q~keL-----e~efek-~~~---------~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (1871)
++| ++|=|+.+.-. +--.-+ .+. ..+| |+-++.+. +.+.+.+ ++.++-
T Consensus 295 p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP-Rfhksk~~----------~~~~~~~-----~eDddd 357 (885)
T KOG2023|consen 295 PYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP-RFHKSKEH----------GNGEDAD-----DEDDDD 357 (885)
T ss_pred HHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccc-hhhhchhc----------cCccccc-----cccccc
Confidence 554 66666665321 111111 111 1233 55554432 1111111 111111
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHH---HHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERK---DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 347 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRk---EaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~ 347 (1871)
|.+| +.=.-..|--|| .+|+-|..+... .=.--++..||..+..-+=.|--.++=
T Consensus 358 De~D-----------------DdD~~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 358 DEDD-----------------DDDAFSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------cccccccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224688888 455554433211 113346778888888777788888889
Q ss_pred HHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHH
Q 000200 348 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 427 (1871)
Q Consensus 348 ~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L 427 (1871)
.+|+||+|=.++|.+|..-++|-++..+-|||+-||. + +|.+|......+
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs--------I---TCWTLsRys~wv------------------- 465 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS--------I---TCWTLSRYSKWV------------------- 465 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee--------e---eeeeHhhhhhhH-------------------
Confidence 9999999999999999999999999999999999984 2 377776543322
Q ss_pred HHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 428 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 428 ~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
++.. + .++++.++..+.+.+=|++..|.+||+.+++++---.|++ +.+|++.+
T Consensus 466 ---~~~~-~---~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~I 518 (885)
T KOG2023|consen 466 ---VQDS-R---DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYI 518 (885)
T ss_pred ---hcCC-h---HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 1211 1 2345777888999999999999999999999999999976 66787754
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.73 E-value=5.9e-05 Score=97.23 Aligned_cols=570 Identities=16% Similarity=0.190 Sum_probs=328.1
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHH-HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~-~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1871)
.+++.+.++|=--|.=|..+|...++. .-.++.+++ -+++.+.+ -..|+|-.|++.....+..+++ ++..-..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLk--lL~D~ngEVQnlAVKClg~lvs---Kvke~~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLK--LLEDKNGEVQNLAVKCLGPLVS---KVKEDQL 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHH--HHhccCcHHHHHHHHHHHHHHh---hchHHHH
Confidence 456667777755566666666655544 111222221 13333332 1478999999999999998885 4444455
Q ss_pred hhhccchhhcc-ccch-hhhHHHH-HHHHHHHhhc------hHhHHHHHHHhhhhcCChh------hHHHHHHHHHHHHH
Q 000200 683 VLCLLGISERV-ADIK-TRAHAMK-CLTTFSEAVG------PGFIFERLYKIMKDHKNPK------VLSEGILWMVSAVE 747 (1871)
Q Consensus 683 ~~~l~~lveKl-gD~K-~r~~a~e-~L~~~aE~~~------~~~V~~~l~~~~~~~KnPK------v~~e~l~wl~~ai~ 747 (1871)
..++..+++++ .+.+ .|+.+.- +.+.+++.-+ ..-|+.++.+.+ .+-+-+ ++-|+|+-|+..+.
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l-~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKL-KQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHH-HHHhhhcccchhhHHHHHHHHHHHHH
Confidence 55566666663 3332 4555444 4444665431 234555555553 233333 89999999999999
Q ss_pred HhccCccch-HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcc
Q 000200 748 DFGVSHLKL-KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK 826 (1871)
Q Consensus 748 eFG~~~~~~-K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R 826 (1871)
.||--..|. ..+..++.-. |++.-.+||.-|+.+||-+-.+.+..+...+
T Consensus 163 r~g~ll~~fh~~il~~l~~q-l~s~R~aVrKkai~~l~~la~~~~~~ly~~l---------------------------- 213 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQ-LQSPRLAVRKKAITALGHLASSCNRDLYVEL---------------------------- 213 (1233)
T ss_pred hhcccCcchHHHHHHHHhhc-ccChHHHHHHHHHHHHHHHHHhcCHHHHHHH----------------------------
Confidence 999765555 5677777777 9999999999999999988776654444332
Q ss_pred ccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc
Q 000200 827 TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 906 (1871)
Q Consensus 827 ~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D 906 (1871)
...+ .+.|-.|
T Consensus 214 ----------------------------i~~L--------------------------------------l~~L~~~--- 224 (1233)
T KOG1824|consen 214 ----------------------------IEHL--------------------------------------LKGLSNR--- 224 (1233)
T ss_pred ----------------------------HHHH--------------------------------------HhccCCC---
Confidence 0011 1111111
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHh---ccCchhHHHHHHHHHHHHHHhcc--chhhhHH----HH
Q 000200 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVLDAWLAAVH--LDKMVPY----VT 977 (1871)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~alda~~~~~g--l~~~~~~----i~ 977 (1871)
++-.-+.+-.+|++.|+.+.|..|..|.-.++|-++... ...---+|+..++++.+++..|. +-++.|+ ..
T Consensus 225 ~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 225 TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCL 304 (1233)
T ss_pred CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHH
Confidence 222234456789999999999999999999999999888 77778999999999999999986 3333333 33
Q ss_pred HHHh-cccCCcch-HHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 978 TALT-DAKLGAEG-RKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 978 ~~L~-~~~~~p~~-r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
+++. +||.|-.. --|--.++. ... +... .-.|+-=+|-+=-||.+|..|+..++. --.|.+-...+.+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~e----d~e---Dde~--~deYsDDeD~SWkVRRaAaKcl~a~Is-SR~E~L~~~~q~l 374 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLE----DEE---DDEQ--DDEYSDDEDMSWKVRRAAAKCLEAVIS-SRLEMLPDFYQTL 374 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhh----ccc---cchh--ccccccccchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHHh
Confidence 3443 45443221 111111111 110 1111 224444567778899999999987665 3445555555556
Q ss_pred CchhHHHHHHHHHhccCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhh
Q 000200 1056 QGPALALILERIKLNGASQ--------VSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1127 (1871)
Q Consensus 1056 k~~~~~~i~~~l~ka~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1871)
-|+.....++.=|..+.-. -.+.+. ...-. ..|.-.+
T Consensus 375 ~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~-----------------------------~~~~~------d~d~~e~ 419 (1233)
T KOG1824|consen 375 GPALISRFKEREENVKADVFHAYIALLKQTRPV-----------------------------IEVLA------DNDAMEQ 419 (1233)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC-----------------------------ccccc------Cchhhhc
Confidence 5554444333222211000 000000 00000 0000000
Q ss_pred hhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhH
Q 000200 1128 SQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1207 (1871)
Q Consensus 1128 ~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~ 1207 (1871)
+++.. ..|. |+.|. +.+=+.+..+|=.+..|....++.+|.+.+...+..+..
T Consensus 420 ~g~~s---------------~~~~-----------L~~~~-~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~ 472 (1233)
T KOG1824|consen 420 GGTPS---------------DLSM-----------LSDQV-PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ 472 (1233)
T ss_pred cCCcc---------------chHH-----------HHhhh-HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh
Confidence 11100 0021 22221 223334455555677788999999999999888888888
Q ss_pred hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhcc
Q 000200 1208 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFY 1287 (1871)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vy 1287 (1871)
..|-++-=+..+|.|.|++..+|.. .|.-+...|...+-+--..--..+.|-++.-+|||=-
T Consensus 473 ~~~slvpgI~~~l~DkSsss~~ki~-~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fy----------------- 534 (1233)
T KOG1824|consen 473 HIPSLVPGIIYSLNDKSSSSNLKID-ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFY----------------- 534 (1233)
T ss_pred cccccchhhhhhcCCccchHHHHHH-HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchH-----------------
Confidence 8999999999999999999888743 3333344444444322222334445555555555422
Q ss_pred CccchHHHHHhhhccCChhhHhHHHHHHHHHHHhh-------cCcccCccchH--HHHHHH-hccCChhHHHHHHHHHHH
Q 000200 1288 SATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHH-------GAEISGQLKSL--QIVASL-TAERDGEIRKAALNTLAT 1357 (1871)
Q Consensus 1288 p~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~-------G~~v~~~~Kal--~~ia~~-i~drD~~VR~AALn~l~~ 1357 (1871)
+.-+|.|-.+..+++-- |+++..-.+.+ -.+.++ ..|.|..||.+||.|+++
T Consensus 535 ------------------KisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 535 ------------------KISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred ------------------hhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 22333334444443321 11111111111 122222 248999999999999999
Q ss_pred HHHHhchhHHHHhccCCHHHHhhHHHHHHHhHH
Q 000200 1358 GYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR 1390 (1871)
Q Consensus 1358 ~y~~~Gd~v~k~~g~ls~k~~s~Leer~kr~~~ 1390 (1871)
.-...||. +|+.-+.-+-.+-||+++-..
T Consensus 597 ~i~~fgD~----l~~eL~~~L~il~eRl~nEiT 625 (1233)
T KOG1824|consen 597 IIANFGDF----LGNELPRTLPILLERLGNEIT 625 (1233)
T ss_pred HHHHHhhh----hhhhhHHHHHHHHHHHhchhH
Confidence 99999964 566666666667777775433
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.73 E-value=0.0012 Score=94.21 Aligned_cols=600 Identities=13% Similarity=0.108 Sum_probs=349.7
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCC--CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc--
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-- 363 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~--~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-- 363 (1871)
+.+-+.+.+=..+.+|...|..++. .+.... -+.| .+..|-+++. +.+..+.-.|+.+++.||.+ ...+..+
T Consensus 194 LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG-aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv 271 (2102)
T PLN03200 194 LVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG-AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIA 271 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 5555555555667777777765542 232111 1222 3677777886 67789999999999999985 2223333
Q ss_pred hhhhHHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhh
Q 000200 364 SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 364 ~~~~~~~lLeklKE---------KK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~ 433 (1871)
....+|++++-+.. .+..+++.+.-||-.++. ....++..+...+.+. .+.+-..++.=|...+..
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg----g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG----GMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC----CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 23458888877752 345567777777777654 3344555555555432 223222333333333222
Q ss_pred CC-hhHHHHhh--hhhHHHHHhhhCCCCHHH-HHHHHHHHHHHH------HHh---C-hhHHHHHhhcCCHHHHHHHHHH
Q 000200 434 SS-KAAVLKVH--KDYVPICMECLNDGTPEV-RDAAFSVLAAIA------KSV---G-MRPLERSIEKLDDVRRNKLSEM 499 (1871)
Q Consensus 434 ~~-~~~~~~~~--k~~~~~l~k~l~Ds~~~V-R~aA~~~l~~lm------k~~---G-e~~l~~~l~~Ld~~kk~KI~e~ 499 (1871)
.. .......+ ..+++.+++++..+++.+ .+.+.++|..++ +.+ | .+.+..++.--+...+...-..
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~a 427 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHH
Confidence 11 11111111 246789999998887774 777777764422 111 1 2222222222221111111111
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCC
Q 000200 500 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 579 (1871)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~ 579 (1871)
+..- .
T Consensus 428 L~~L--------------------------------------------------------------------------~- 432 (2102)
T PLN03200 428 LSSL--------------------------------------------------------------------------C- 432 (2102)
T ss_pred HHHH--------------------------------------------------------------------------h-
Confidence 1000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCc
Q 000200 580 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWS 653 (1871)
Q Consensus 580 ~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~Pgwk 653 (1871)
.-+.|-.+.....-.-+-++..|.+.+=..|..|+..+.....+.++. ......|+++|.
T Consensus 433 --------~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~------ 498 (2102)
T PLN03200 433 --------CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE------ 498 (2102)
T ss_pred --------CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc------
Confidence 001112222222223355677777777777777776665433222110 123456677664
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhc
Q 000200 654 EKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 729 (1871)
Q Consensus 654 esNfqV~~~~leil~~la~~~~~fs~~~~--~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~ 729 (1871)
..++.++....-+|..++.. ..--+..+ .-+++.+++-+ ||.+.+..+..+|..++.... ..++.++... ..+
T Consensus 499 s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~L-Lls 575 (2102)
T PLN03200 499 TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTAL-LLG 575 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHH-hcC
Confidence 33667778777777766532 11111222 12455555544 456788888888888876433 3455666654 588
Q ss_pred CChhhHHHHHHHHHHHHHHhcc-----CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHH
Q 000200 730 KNPKVLSEGILWMVSAVEDFGV-----SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPA 804 (1871)
Q Consensus 730 KnPKv~~e~l~wl~~ai~eFG~-----~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpa 804 (1871)
.+|+++.-++.-+..++.--.. .++..-.-|+.+.+. |.+.|+.++..|..+|..+...- ++....+
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~-~d~~~av------ 647 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSR-QDLCESL------ 647 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCC-hHHHHHH------
Confidence 9999999999888776551111 111112456677777 99999999999998887666311 0000000
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHc
Q 000200 805 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA 884 (1871)
Q Consensus 805 ll~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~a 884 (1871)
+++ +-|+ -++.-+.+.+-++|+|+--+|..+....
T Consensus 648 ----v~a----------------------------------------gaIp-PLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 648 ----ATD----------------------------------------EIIN-PCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred ----HHc----------------------------------------CCHH-HHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 000 0023 3777788889999999999999998522
Q ss_pred c--cCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000200 885 N--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1871)
Q Consensus 885 n--krI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1871)
+ ++..- .-...++.|..-|++.+..++..|+..++.|+..-.-.-+-..-..+++++..|.+....+|+.|..+|-.
T Consensus 683 ~~~q~~~~-v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CHHHHHHH-HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 1 11110 11335777999999999999999999999998765322211223458999999999999999999999999
Q ss_pred HHHhccchhhh-H---------HHHHHHhcccC-Ccch--HHHHHHHHHHHhccCCC-Cc------chhhhhhHHhhhcC
Q 000200 963 WLAAVHLDKMV-P---------YVTTALTDAKL-GAEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPASIAMT 1022 (1871)
Q Consensus 963 ~~~~~gl~~~~-~---------~i~~~L~~~~~-~p~~--r~e~l~wL~~~l~~~~~-~~------~~~~~~~p~~~~L~ 1022 (1871)
.+.+...+..+ . .+.+.|...+. +... =-+.+.||++.=.+... .+ +.-.-+.|++.||.
T Consensus 762 L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~ 841 (2102)
T PLN03200 762 LLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLA 841 (2102)
T ss_pred HHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHH
Confidence 98888876644 2 34555653221 2221 34788898874222221 12 22345788999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 000200 1023 DKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+-+++|-+.|-++|..+.+
T Consensus 842 ~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 842 EGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred cCChHHHHHHHHHHHHHhc
Confidence 9999999999999987754
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.67 E-value=0.0096 Score=85.62 Aligned_cols=812 Identities=17% Similarity=0.163 Sum_probs=444.0
Q ss_pred CcccccCCCCchhhhhhhhcc--ChHHHHHHHHHHHHhhhcC---CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 000200 277 DPVDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1871)
Q Consensus 277 ~~vdIl~klpk~~f~~~l~s~--KWkeRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1871)
||....... ..+.++|.+. +=++|+.++-+|..+.+.. |..=++.++.+..|-..|.-.+..+...|+.++..
T Consensus 7 ~~~~~~~~v--~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~n 84 (2102)
T PLN03200 7 DPDGTLASV--AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGV 84 (2102)
T ss_pred CccchHHHH--HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444444 3688899866 7799999999999987532 32212334456667777764456666677778887
Q ss_pred HHHH--hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CC----C---hhhhHHHHHHHhhcCCc---h
Q 000200 352 LARG--LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----N---LVDVVEDVKTSVKNKVP---L 418 (1871)
Q Consensus 352 lA~g--Lr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~-~~----~---l~~~~e~i~~al~~KnP---~ 418 (1871)
|+.- .+...- ....+|++++-|++-....++++..+|-.+...+ |- . -...++.+...+++.+. .
T Consensus 85 LS~~e~nk~~Iv--~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 85 LCKEEDLRVKVL--LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HhcCHHHHHHHH--HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 7743 222222 2689999999999999999999999999887531 00 0 12345666677776542 1
Q ss_pred hHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHH
Q 000200 419 VRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLS 497 (1871)
Q Consensus 419 vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~ 497 (1871)
++..+..-|...- .+.......++ ...+|.++..|.+.++.++..|+.+|..++...++ . +.+|.
T Consensus 163 L~~~Av~AL~nLs-~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVI 228 (2102)
T PLN03200 163 VEGLLTGALRNLC-GSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVL 228 (2102)
T ss_pred HHHHHHHHHHHHh-cCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHH
Confidence 2222222332222 22211111112 24899999999999999999998888777554432 1 11111
Q ss_pred HHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000200 498 EMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKL 577 (1871)
Q Consensus 498 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~ 577 (1871)
+. |+ .
T Consensus 229 ---ea-Ga----------V------------------------------------------------------------- 233 (2102)
T PLN03200 229 ---DA-GA----------V------------------------------------------------------------- 233 (2102)
T ss_pred ---HC-CC----------H-------------------------------------------------------------
Confidence 11 00 0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccch
Q 000200 578 TEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKN 656 (1871)
Q Consensus 578 ~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s-~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesN 656 (1871)
+-++..|.+ .+-..|-+|.-.|...... .....+.++. .
T Consensus 234 --------------------------P~LV~LL~sg~~~~VRE~AA~AL~nLAs~---s~e~r~~Iv~----a------- 273 (2102)
T PLN03200 234 --------------------------KQLLKLLGQGNEVSVRAEAAGALEALSSQ---SKEAKQAIAD----A------- 273 (2102)
T ss_pred --------------------------HHHHHHHccCCChHHHHHHHHHHHHHhcC---CHHHHHHHHH----C-------
Confidence 001111110 1111222222222211110 0011111111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHH
Q 000200 657 VQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 736 (1871)
Q Consensus 657 fqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~ 736 (1871)
.++..+-.+... + ++ .|+.+ . ...-+++.+.-+|-.+|--. ..++..+-..+-..+.+.+++
T Consensus 274 -----GgIp~LI~lL~s-p--~~----e~~~~---~-~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~a 335 (2102)
T PLN03200 274 -----GGIPALINATVA-P--SK----EFMQG---E-FAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIA 335 (2102)
T ss_pred -----CCHHHHHHHHhC-c--ch----hhhcc---c-cchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHH
Confidence 112222211110 0 00 00000 0 01123445555555555322 233444444333345666777
Q ss_pred HHHHHHHHHHHHhccCc-----cchHhHHHHHhhhcCCCccHH-HHHHHHHHHHHHHhhhCch-hHhhh--hcchHHHHH
Q 000200 737 EGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPD-IKGFL--ADVKPALLS 807 (1871)
Q Consensus 737 e~l~wl~~ai~eFG~~~-----~~~K~li~~~k~~~l~~sN~~-VR~aAi~Ll~~ly~~~G~~-l~~~l--~dlkpall~ 807 (1871)
+++.-+..++..|.... ++...++..+-++ +.+.||. |...++..|..+| |.. ++..| .|.++.
T Consensus 336 da~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~---gN~~l~~~L~~~daik~--- 408 (2102)
T PLN03200 336 DTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLY---GNAYLSRKLNHAEAKKV--- 408 (2102)
T ss_pred HHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhc---CChHHHHHHHhccchhh---
Confidence 88888888877665432 2222333444555 6777666 4666666665554 322 22222 111222
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000200 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1871)
Q Consensus 808 ~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1871)
++.-+...+=..|.++...|..++...+..
T Consensus 409 --------------------------------------------------LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~ 438 (2102)
T PLN03200 409 --------------------------------------------------LVGLITMATADVQEELIRALSSLCCGKGGL 438 (2102)
T ss_pred --------------------------------------------------hhhhhccCCHHHHHHHHHHHHHHhCCCHHH
Confidence 333333333456666777766666321111
Q ss_pred CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh---hhhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000200 888 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS---SKGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1871)
Q Consensus 888 I~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~---~k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1871)
++--.--.-++.|-.-|...+..++..|+..++.|+.+ ....+. --+.+|+++..|...+..+++.|..+|.-..
T Consensus 439 ~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 11110012367777778778899999999999999763 332221 2468999999999999999999888887654
Q ss_pred Hh-------ccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 965 AA-------VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 965 ~~-------~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
.. +.-...++.+.+.|.++ ++..|.+++.=|. .|....+ ...+++++.-|...++.+...+-.+|+
T Consensus 517 ~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~-nLi~~~d----~~~I~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 517 CHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLT-KLVRTAD----AATISQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHH-HHHhccc----hhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 31 11123455677777754 4566655443333 3432222 123466666677777788888888888
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCc
Q 000200 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPES 1117 (1871)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1117 (1871)
.++.....+.+..... ....-.+.+.+.++.
T Consensus 590 nIlsl~~~~d~~~~g~-~~~ggL~~Lv~LL~s------------------------------------------------ 620 (2102)
T PLN03200 590 HVLSVASLEDLVREGS-AANDALRTLIQLLSS------------------------------------------------ 620 (2102)
T ss_pred HHHhhcchhHHHHHhh-hccccHHHHHHHHcC------------------------------------------------
Confidence 7777655544332210 001112222222221
Q ss_pred cccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHh
Q 000200 1118 IMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKA 1197 (1871)
Q Consensus 1118 ~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~ 1197 (1871)
.++..+..--..=+++..-|.++++++ ...-.=+-++..|.+.+|.-.-++.-.|...
T Consensus 621 -------------------gs~~ikk~Aa~iLsnL~a~~~d~~~av---v~agaIpPLV~LLss~~~~v~keAA~AL~nL 678 (2102)
T PLN03200 621 -------------------SKEETQEKAASVLADIFSSRQDLCESL---ATDEIINPCIKLLTNNTEAVATQSARALAAL 678 (2102)
T ss_pred -------------------CCHHHHHHHHHHHHHHhcCChHHHHHH---HHcCCHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 001100000000023344555665554 3334455677788888887655555444433
Q ss_pred cCCCh----hhhhH--hHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHH
Q 000200 1198 LPSIR----KDIIE--VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEK 1271 (1871)
Q Consensus 1198 l~~~~----~~~i~--~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~ 1271 (1871)
..... ..++. .+-.+.+++ .+.+..+...+++.|..++..=... .+.=..-++|.|+.=+.+..+.
T Consensus 679 ~~~~~~~q~~~~v~~GaV~pL~~LL----~~~d~~v~e~Al~ALanLl~~~e~~----~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 679 SRSIKENRKVSYAAEDAIKPLIKLA----KSSSIEVAEQAVCALANLLSDPEVA----AEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HhCCCHHHHHHHHHcCCHHHHHHHH----hCCChHHHHHHHHHHHHHHcCchHH----HHHHhcCcHHHHHHHHHhCChH
Confidence 32222 12232 244455554 5678888888888888665432211 1122234589999888888888
Q ss_pred HHHHHHHHHHHHhhccCccchH-HH---------HHhhhccCChhh--HhHHHHHHHHHHH-hhcCcccCc--------c
Q 000200 1272 VREKMRELTKQIVNFYSATKTL-PY---------ILEGLRSKNNRT--RIECVDLVGFLID-HHGAEISGQ--------L 1330 (1871)
Q Consensus 1272 vR~~vr~i~~~~~~vyp~skvf-~~---------l~~glksKN~r~--R~Ecl~el~~li~-~~G~~v~~~--------~ 1330 (1871)
+|+..-..+-++|.-+|...++ .| |++-|++=|.+. -.|-||.|+.+.. ++|.+...| +
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p 830 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVP 830 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhcc
Confidence 9999999999999999988866 22 345567777655 4478999998877 455443122 2
Q ss_pred chHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhccC---CHHHHhhHHHHHHHh
Q 000200 1331 KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL---TDAQKSMLDDRFKWK 1388 (1871)
Q Consensus 1331 Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~l---s~k~~s~Leer~kr~ 1388 (1871)
-.|.-+-.++++-.|.|-..|+..|. .+++|+-. .+|++ .++-.+-|-.|+=.+
T Consensus 831 ~~l~~l~~~l~~~~p~~~~kai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 831 SSLEPLVRCLAEGHPLVQDKAIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred CchHHHHHHHHcCChHHHHHHHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 34677778889999999999999998 55666522 23332 456677778887655
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=7e-07 Score=111.96 Aligned_cols=305 Identities=18% Similarity=0.179 Sum_probs=213.3
Q ss_pred hccCchhHHHHHHHHHHHHHhhCCCcc-ChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 138 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 138 ~~K~PKvvaaai~~l~~~l~~FG~~vv-~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
.+..|.|-..-+.+...++.+-|-+.+ +++++.+.- +=...+-++|+....+.+.+-+++-.. +.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~--l~~~~~~~~~~~~~v~~~~~a~~~~~~--------d~~~~- 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQR--LNSLHNDNLRNNVVVLEGTLAFHLQIV--------DPRPI- 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccchhHHHhhhhHHHHHHHHHhcccc--------Ccchh-
Confidence 566677777777788888888887543 444432211 001128899999888888877766421 12221
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhc
Q 000200 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA 296 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s 296 (1871)
+-+|..|+... +|+...+..-..- -.+ ..... . -.+...++ +...+.+++
T Consensus 96 -~~~~~~~~~~~---tps~~~q~~~~~~-l~~-~~~~~--------~-----------~~~~~~~l-----~~l~~ll~~ 145 (569)
T KOG1242|consen 96 -SIIEILLEELD---TPSKSVQRAVSTC-LPP-LVVLS--------K-----------GLSGEYVL-----ELLLELLTS 145 (569)
T ss_pred -HHHHHHHHhcC---CCcHHHHHHHHHH-hhh-HHHHh--------h-----------ccCHHHHH-----HHHHHHhcc
Confidence 33444454432 2322221110000 000 00000 0 00111222 345667889
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000200 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1871)
Q Consensus 297 ~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~-A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl 375 (1871)
.+-.+|+.+-.++..+....-+..--=..++..|-+-+.|-|-..... ++-+.......||+.|+||...++|.+|.+|
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~ 225 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF 225 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh
Confidence 999999999999888877666655333567888999999999888885 8888999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCChh---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHh
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCLNLV---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 452 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~~l~---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k 452 (1871)
+|+=+.||+|+..|..++.. |++.. .++..++..+.....+-|+.++..|. ++..+-+..+..++..++|.+..
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~--~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR--CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred hccchhhhHHHHHHHHHHHH--hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999998 56643 55666666666667888887777776 77777667777777899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000200 453 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
.|.|+.++||++|.+||-.+-.++....+.++..
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip 336 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP 336 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999999999999888888776666654
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.56 E-value=0.00049 Score=86.90 Aligned_cols=569 Identities=19% Similarity=0.218 Sum_probs=310.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcC
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 415 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~K 415 (1871)
|-........-.+|..||++-|-.| .+..|=--+--+-.-||+-...|.-.++.+ +.+..++.-+...-++|
T Consensus 452 ded~yar~egreIisnLakaaGla~------mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLAT------MISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhHH------HHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 3344445566667777776544222 222333334445566777777777777765 77888888777766766
Q ss_pred -CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHHhhcCCH-
Q 000200 416 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKLDD- 490 (1871)
Q Consensus 416 -nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~l~~Ld~- 490 (1871)
..+.|--..+.....-.-...+.+ ..++.++.++-++|.|.+..||--++-+|+++....|. +.|...+.-|-.
T Consensus 524 kSwqaRhTgIkivqqIail~Gcsvl-phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCSVL-PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcchhh-hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 677776555544433222233333 44588999999999999999999999999999999873 333333322211
Q ss_pred HH--HHH-HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000200 491 VR--RNK-LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 567 (1871)
Q Consensus 491 ~k--k~K-I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~ 567 (1871)
++ +.| +..+++.-+..-+-.. ++-. .=-.+.- +.--.+
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTrev---mlil~r--------------------- 643 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTREV---MLILIR--------------------- 643 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHHH---HHHHHH---------------------
Confidence 11 111 1112221110000000 0000 0000000 000000
Q ss_pred CCCCcccccCCCCCCCCCCCCCCHHHHH-------HHH-------hccCcHhHHHhhhhccHHHHHHH----HHHHHHHH
Q 000200 568 GSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQV 629 (1871)
Q Consensus 568 ~~~~~~~s~~~~~~~~~~~~~~s~ee~e-------~~~-------~~l~~~~i~~~L~s~~WK~RL~a----~e~l~~~v 629 (1871)
+.....||.. .+. ..++..|++.-++.+=|-.|+++ +..+.+.-
T Consensus 644 ------------------Ef~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 644 ------------------EFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred ------------------hhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH
Confidence 0000000000 000 12566788888999999999987 33332211
Q ss_pred HhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC--CCCccchhhhccchhhccccchhhhHH-HHHH
Q 000200 630 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--KFPKKCVVLCLLGISERVADIKTRAHA-MKCL 706 (1871)
Q Consensus 630 ~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~--~fs~~~~~~~l~~lveKlgD~K~r~~a-~e~L 706 (1871)
-+.-..-...+++-|.+. .++|-|-|--+.+.+.+..+..+.+ .|..+.....+.+++--+.+.-+-+.+ -..+
T Consensus 706 v~ia~KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred HHHHHHhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 111111123455555554 4789999988888888888777653 455555555555544443333221111 1111
Q ss_pred HHHHHhhch------HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHH
Q 000200 707 TTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATI 780 (1871)
Q Consensus 707 ~~~aE~~~~------~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi 780 (1871)
-+++.+++- .-++..++.. .++|+|||++.+...|+.+.. + ++.|| +
T Consensus 783 g~V~~~lg~r~kpylpqi~stiL~r-Lnnksa~vRqqaadlis~la~-----------V---lktc~-e----------- 835 (1172)
T KOG0213|consen 783 GTVVNALGGRVKPYLPQICSTILWR-LNNKSAKVRQQAADLISSLAK-----------V---LKTCG-E----------- 835 (1172)
T ss_pred HHHHHHHhhccccchHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHH-----------H---HHhcc-H-----------
Confidence 122222211 1122333333 367778887777777665541 1 11110 0
Q ss_pred HHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCC-CCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHH
Q 000200 781 KLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF-EGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 859 (1871)
Q Consensus 781 ~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~-~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~ 859 (1871)
-.+-.|+|--|..+|+.+-|..|-.|-.-.--+-. -|-.. + .-|--||.+.|||-|
T Consensus 836 ---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k--m-----------------~pPi~dllPrltPIL- 892 (1172)
T KOG0213|consen 836 ---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK--M-----------------TPPIKDLLPRLTPIL- 892 (1172)
T ss_pred ---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc--c-----------------CCChhhhcccchHhh-
Confidence 01223344444445544444333333222221100 00000 0 012235666678743
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
.++-=|+--..++=|..|...+.-++.+- |-++ .|-.-|+--||.+-..|.+..|.||.|.||. -
T Consensus 893 ---knrheKVqen~IdLvg~IadrgpE~v~aR---EWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------d 960 (1172)
T KOG0213|consen 893 ---KNRHEKVQENCIDLVGTIADRGPEYVSAR---EWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------D 960 (1172)
T ss_pred ---hhhHHHHHHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------H
Confidence 44556667777888888887543333332 2222 2333445679999999999999999999974 4
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH---HHHHHHhccCCCCcchhhh
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF---DWLSKQLTGLSGFPDAAHL 1013 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l---~wL~~~l~~~~~~~~~~~~ 1013 (1871)
++..++..|+-+.-+.|.+..-++-.+++.||.=.++|.+..-...|..| +...+| .|+-++..++ +.+....
T Consensus 961 VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n--VQnGVLkalsf~Feyigem--skdYiya 1036 (1172)
T KOG0213|consen 961 VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN--VQNGVLKALSFMFEYIGEM--SKDYIYA 1036 (1172)
T ss_pred HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH--HHHhHHHHHHHHHHHHHHH--hhhHHHH
Confidence 67778888888899999999999999999999888888666555545332 344444 4554554443 3456667
Q ss_pred hhHH-hhhcCCCCHHHHHHHHHHHHHH
Q 000200 1014 LKPA-SIAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 1014 ~~p~-~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
+.|+ -..|+||++--|.-|..++-.+
T Consensus 1037 v~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1037 VTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred hhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 7774 4599999999999888776544
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.6e-05 Score=96.15 Aligned_cols=506 Identities=16% Similarity=0.202 Sum_probs=297.0
Q ss_pred ccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh
Q 000200 361 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
.+...+++|.+|+-|+---+.+|..+..|++.+.-.. ...++.++|.+..--.+.+|.||.+...=|.-.++-.+.
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 3668899999999999999999999999998765321 134667777777666788899999999988888875543
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH-hChhHHHHHhhcCCHHHHHHHH-----HHHhcCCCCCCCC
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS-VGMRPLERSIEKLDDVRRNKLS-----EMIAGSGGDVATG 510 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~-~Ge~~l~~~l~~Ld~~kk~KI~-----e~~~~~~~~~~~~ 510 (1871)
-+.+.+..++..++....|.+++|-=.|+|..-++..- +-...+.+|+.+|=|.-..+.. ..+-+..
T Consensus 249 -kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~------ 321 (885)
T KOG2023|consen 249 -KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN------ 321 (885)
T ss_pred -hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc------
Confidence 23344578889999999999999999999988887744 3356788888776554332210 0110000
Q ss_pred CCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 000200 511 TSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS 590 (1871)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s 590 (1871)
..-..++ -+ . .-.+|-=. |+...+.+... +.+|..+.+..
T Consensus 322 eeD~~vp----------Dr------e------eDIkPRfh----------ksk~~~~~~~~--------~~eDdddDe~D 361 (885)
T KOG2023|consen 322 EEDESVP----------DR------E------EDIKPRFH----------KSKEHGNGEDA--------DDEDDDDDEDD 361 (885)
T ss_pred cccccCC----------ch------h------hhccchhh----------hchhccCcccc--------ccccccccccc
Confidence 0000000 00 0 00111100 11111111100 11222223333
Q ss_pred HHHHHHHHhccCcHhHHHhhhhccHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHh---cCCCccchHHHHHHHH
Q 000200 591 LEEIESRLGSLIPADTVGQLKSAVWKERLEA---ISSLRQQVEAVQNLDQSVEILVRLVCM---LPGWSEKNVQVQQQVI 664 (1871)
Q Consensus 591 ~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a---~e~l~~~v~~~~~~~~~~~~lvr~l~~---~PgwkesNfqV~~~~l 664 (1871)
.+|+ .++|.-|.-+ +.-|...+.. .-.++++=.|.. +..| .|...++
T Consensus 362 DdD~-----------------~~dWNLRkCSAAaLDVLanvf~~-----elL~~l~PlLk~~L~~~~W-----~vrEagv 414 (885)
T KOG2023|consen 362 DDDA-----------------FSDWNLRKCSAAALDVLANVFGD-----ELLPILLPLLKEHLSSEEW-----KVREAGV 414 (885)
T ss_pred cccc-----------------cccccHhhccHHHHHHHHHhhHH-----HHHHHHHHHHHHHcCcchh-----hhhhhhH
Confidence 3333 2478877643 3333333322 123344333322 2345 4556666
Q ss_pred HHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHh---hch----HhHHHHHHHhhhhcCChhhH
Q 000200 665 EVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 665 eil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~---~~~----~~V~~~l~~~~~~~KnPKv~ 735 (1871)
=++.++|+.+-.+.-.....++|.++.-+.|-| +|...+=+|..|+-= .++ ..|++.++..+ =.+|-|||
T Consensus 415 LAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l-lD~NK~VQ 493 (885)
T KOG2023|consen 415 LALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL-LDSNKKVQ 493 (885)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH-hcccHHHH
Confidence 677888887655555555678888888888877 677766677766641 122 23444444443 36788888
Q ss_pred HHHHHHHHHHHHHhccCccch-HhHHHHHhhh--cCCCccHHHHHHHHHHHHHHHhhhCchh--HhhhhcchHHHHHHHH
Q 000200 736 SEGILWMVSAVEDFGVSHLKL-KDLIDFCKDT--GLQSSAAATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALD 810 (1871)
Q Consensus 736 ~e~l~wl~~ai~eFG~~~~~~-K~li~~~k~~--~l~~sN~~VR~aAi~Ll~~ly~~~G~~l--~~~l~dlkpall~~ie 810 (1871)
..+|.-++...++-|-.-|+. ..+++.+-.+ ..++.|=-|-=- .+|++--.+|..| ..|++=+=|.|+
T Consensus 494 EAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYD---AIgtlAdsvg~~Ln~~~YiqiLmPPLi---- 566 (885)
T KOG2023|consen 494 EAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYD---AIGTLADSVGHALNKPAYIQILMPPLI---- 566 (885)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHH---HHHHHHHHHHHhcCcHHHHHHhccHHH----
Confidence 888888888888888765542 2333322221 012222222111 1334444455544 233433333333
Q ss_pred HHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC
Q 000200 811 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP 890 (1871)
Q Consensus 811 ~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p 890 (1871)
+.|+..+.+. -|++|=-...+.|...+-..+--=.|-+=.-...-+++-++.- -+.+.
T Consensus 567 ~KW~~lsd~D---------------------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~-~~~~~ 624 (885)
T KOG2023|consen 567 EKWELLSDSD---------------------KDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLL-AKVQQ 624 (885)
T ss_pred HHHHhcCccc---------------------chHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHH-HhccC
Confidence 3344443321 2456665555555555555554555666555555554333211 12222
Q ss_pred CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 891 AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 891 ~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
...++.+ .+..+..+|..++.+|+|+|.+.+..+ ..++.=++.|+.|.-+-||+.+-+-|.-....|
T Consensus 625 ~~~~~~p----------dkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c- 693 (885)
T KOG2023|consen 625 DPTVEAP----------DKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC- 693 (885)
T ss_pred CccccCC----------CcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-
Confidence 2224432 366777899999999999999999763 348888999999999999999999999888888
Q ss_pred chhhhHHHHHHHh
Q 000200 969 LDKMVPYVTTALT 981 (1871)
Q Consensus 969 l~~~~~~i~~~L~ 981 (1871)
.+.+.|.+.+.|.
T Consensus 694 ~~~v~p~~~~fl~ 706 (885)
T KOG2023|consen 694 FEHVIPNLADFLP 706 (885)
T ss_pred HHhccchHHHHHH
Confidence 6677776666554
No 16
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00031 Score=87.06 Aligned_cols=279 Identities=15% Similarity=0.172 Sum_probs=203.8
Q ss_pred cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----
Q 000200 894 GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 968 (1871)
Q Consensus 894 geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g----- 968 (1871)
.++++-|+.|+.+.|.+.-+--+.++..+=..=+-.|-.|.--++++++.+|+|+-..||+-+-.+|+.+....-
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 788999999999999999999999999998888888999999999999999999999999999999998887653
Q ss_pred --chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhHHhhhcCCCCH-HHHHHHHHHHHHHHHhc
Q 000200 969 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 969 --l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~-dVRkaA~~~L~~~m~~~ 1043 (1871)
++.+.+.+..-+.++ +|+.+.-++.|+.+.+.-.+.. +-...++..++-|+.|.-. ..+..|+.+-+.+|+.+
T Consensus 246 ~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 233333333333333 6889999999999988665542 2344455667779988877 58888888777777766
Q ss_pred CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchh
Q 000200 1044 GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQD 1123 (1871)
Q Consensus 1044 G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1871)
+.+.-... +
T Consensus 324 s~~~~~~~---i-------------------------------------------------------------------- 332 (675)
T KOG0212|consen 324 SSERLKEE---I-------------------------------------------------------------------- 332 (675)
T ss_pred hhhhhccc---c--------------------------------------------------------------------
Confidence 54322211 0
Q ss_pred hhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChh
Q 000200 1124 FAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1203 (1871)
Q Consensus 1124 ~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~ 1203 (1871)
+-+ .-+|- +..++++..-..++++++-+.-.....+-
T Consensus 333 ---d~~----------------------------~ii~v------------l~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 333 ---DYG----------------------------SIIEV------------LTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred ---chH----------------------------HHHHH------------HHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 000 01111 22223344445577777777777666677
Q ss_pred hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHH
Q 000200 1204 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQI 1283 (1871)
Q Consensus 1204 ~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~ 1283 (1871)
+++...|=||--+-.-+.|+.-.|+.+.|+++.++-.-=...+| --|+-.|++-.-+-+--++.+=-=|+|++
T Consensus 370 ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-------~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-------RKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-------HHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 77777777777776778999999999999999877655444444 56777777777664445666666799999
Q ss_pred hhccCccchHHH
Q 000200 1284 VNFYSATKTLPY 1295 (1871)
Q Consensus 1284 ~~vyp~skvf~~ 1295 (1871)
|..--+.+||.-
T Consensus 443 C~lL~aE~IYr~ 454 (675)
T KOG0212|consen 443 CLLLNAERIYRS 454 (675)
T ss_pred HHHhCHHHHHHH
Confidence 999999999987
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=0.0013 Score=85.27 Aligned_cols=379 Identities=18% Similarity=0.165 Sum_probs=228.6
Q ss_pred hhhhhcc--ChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 291 WEGVKAT--KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 291 ~~~l~s~--KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
-+-+++. +=++|++++..|.-+...-. |...+.-.+-+.+...|..+-.++-=.+..++.. =......+.
T Consensus 10 ~~~~~~~~~~~~~~~~~l~kli~~~~~G~----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~~~~l~~ 81 (526)
T PF01602_consen 10 AKILNSFKIDISKKKEALKKLIYLMMLGY----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPELLILII 81 (526)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHHHHHHTT-------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chhHHHHHH
Confidence 3334444 66788899988766432111 2333444444555555554333333333322222 122477889
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 447 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~ 447 (1871)
+.+..-+.+..+.+|..+..+|-.+... .-.+.+...|...+.|++|-||..++.-+.+++...+.. +.. +.
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 9999999999999999888888887643 235567788889999999999999999999999875332 233 79
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh---hHHHHH-------hhcCCHHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERS-------IEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 517 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge---~~l~~~-------l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~ 517 (1871)
+.+.++++|+++.|+-+|..++..+ +.-.. ..+..+ +...++--.-++-.++....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------- 220 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------- 220 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-------------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999888 21111 111111 12233333333333332210
Q ss_pred CCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHH
Q 000200 518 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 597 (1871)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 597 (1871)
...+++...
T Consensus 221 ----------------------------------------------------------------------~~~~~~~~~- 229 (526)
T PF01602_consen 221 ----------------------------------------------------------------------PMEPEDADK- 229 (526)
T ss_dssp ----------------------------------------------------------------------SSSHHHHHH-
T ss_pred ----------------------------------------------------------------------cCChhhhhH-
Confidence 001111110
Q ss_pred HhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCC
Q 000200 598 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 677 (1871)
Q Consensus 598 ~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~f 677 (1871)
..+-+.+...|.++++-.+++++.-+...-....-.....+.+++++. =+|.| +.--+++.+..++.....+
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~----s~~~n--vr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS----SSDPN--VRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT----SSSHH--HHHHHHHHHHHHCCHCHHH
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh----cccch--hehhHHHHHHHhhcccchh
Confidence 122245567777999999999999887443332212233455666653 13444 4455677777766543111
Q ss_pred CccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000200 678 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1871)
Q Consensus 678 s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K 757 (1871)
-. .....+ .++..--|.-+|..+-++|..++.......|+.++++++.+...+.++.+++.-++.+...|. -+.+
T Consensus 302 v~-~~~~~~-~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~---~~~~ 376 (526)
T PF01602_consen 302 VF-NQSLIL-FFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP---PDAE 376 (526)
T ss_dssp HG-THHHHH-HHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG---SSHH
T ss_pred hh-hhhhhh-heecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC---chHH
Confidence 11 111111 222334455688899999999999999999999999997566688899999999999988883 3445
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 758 DLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 758 ~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
..++.+-+. +...+..|+..++..+
T Consensus 377 ~~v~~l~~l-l~~~~~~~~~~~~~~i 401 (526)
T PF01602_consen 377 WYVDTLLKL-LEISGDYVSNEIINVI 401 (526)
T ss_dssp HHHHHHHHH-HHCTGGGCHCHHHHHH
T ss_pred HHHHHHHHh-hhhccccccchHHHHH
Confidence 555555555 4444444444444433
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.36 E-value=2.1e-05 Score=108.07 Aligned_cols=242 Identities=19% Similarity=0.198 Sum_probs=164.4
Q ss_pred HHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC--chhH
Q 000200 718 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 795 (1871)
Q Consensus 718 V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G--~~l~ 795 (1871)
.++.|++.+ ++.+|.||..++.+|... |- ...++.+..+ |.+.|+.||.+|+..|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456677665 799999999999988764 32 3456666677 999999999999999876622111 1222
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000200 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1871)
Q Consensus 796 ~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1871)
..|++-.|-.....=.-+.... ..-+..|+..+.|++|-+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~----------------------------------~~~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALR----------------------------------AGDAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhc----------------------------------cCCHHHHHHHhcCCCHHHHHHHHH
Confidence 3332222211111111111100 000235778899999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHH
Q 000200 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 955 (1871)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~a 955 (1871)
++..+= + ..+|...+.|.|.-|...++..++.+...-. .-++.++..++|..+.||.+
T Consensus 737 aL~~~~-------------~-~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD-------------D-VESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc-------------C-cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHH
Confidence 987531 1 2356678999999998888887776644311 12677888999999999999
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHH
Q 000200 956 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1871)
Q Consensus 956 a~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1871)
|+.+|..+... ....+.+..+|.++ ++.+|.++..-|.+ +.. ...+.+++.+|.|.+.+||+.|-.+
T Consensus 795 A~~aLg~~g~~---~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~----l~~----~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGCP---PDDVAAATAALRAS--AWQVRQGAARALAG----AAA----DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCCc---chhHHHHHHHhcCC--ChHHHHHHHHHHHh----ccc----cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999877332 23345677888865 58899998877753 221 2344678889999999999999999
Q ss_pred HHHH
Q 000200 1036 IVEI 1039 (1871)
Q Consensus 1036 L~~~ 1039 (1871)
|+.+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9885
No 19
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=0.00012 Score=92.45 Aligned_cols=309 Identities=15% Similarity=0.186 Sum_probs=199.5
Q ss_pred chhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccC-hhHHHHHHHHHHHHHHhhCCc-
Q 000200 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGKD- 202 (1871)
Q Consensus 125 ~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~d-k~VR~ea~~L~vely~wlG~~- 202 (1871)
..+.+.+.+.+.++.=.-.-...+...+...++.+|...+..-.++..+-+...+.+ ...|+.+.--....+..+|+.
T Consensus 131 ~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 131 SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 344455555555553233345556666677777777777777777777777766654 344547777777777777731
Q ss_pred --hhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCccc
Q 000200 203 --PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 280 (1871)
Q Consensus 203 --~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vd 280 (1871)
-+.+.| .. . | .+. |...+ ..|..+.. +...-+.. +++| -
T Consensus 211 EPyiv~~l-p~----i---l----~~~-~d~~~--~Vr~Aa~~-a~kai~~~-----------------~~~~------a 251 (569)
T KOG1242|consen 211 EPYIVPIL-PS----I---L----TNF-GDKIN--KVREAAVE-AAKAIMRC-----------------LSAY------A 251 (569)
T ss_pred CchHHhhH-HH----H---H----HHh-hccch--hhhHHHHH-HHHHHHHh-----------------cCcc------h
Confidence 122222 10 0 0 011 00011 12211110 00000000 1111 1
Q ss_pred ccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc
Q 000200 281 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH 359 (1871)
Q Consensus 281 Il~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~ 359 (1871)
|=.-|| .....+...||+++..+|+-+-.+.. .|+--..-..+++..|..++.|+...|--.+.+|+..+..-...+
T Consensus 252 VK~llp--sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~ 329 (569)
T KOG1242|consen 252 VKLLLP--SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP 329 (569)
T ss_pred hhHhhh--hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH
Confidence 111223 24455655699999999999887765 344334457789999999999999999999999999999998843
Q ss_pred cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc------CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000200 360 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 360 F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~------~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~ 433 (1871)
-+..++|.+++.+.|-+..+.+ |++.+.... .-+|+-+++.+.-++....-.+|..|..-+-..-.-
T Consensus 330 ---dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 330 ---DIQKIIPTLLDALADPSCYTPE----CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ---HHHHHHHHHHHHhcCcccchHH----HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 3777899999999999977774 555554321 134666777788899888877776665544433332
Q ss_pred C-ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 434 S-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 434 ~-~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
. .+..+.+++..++|.+-+.+.|..|+||.-++.+||++.+-+|++.+
T Consensus 403 veDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 403 VEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 2 45566677888999999999999999999999999999999998765
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00012 Score=98.64 Aligned_cols=514 Identities=17% Similarity=0.174 Sum_probs=309.0
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 404 ~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+.+.+.....+.||..|...+-||--.++.+. +... -.++.+.-.++..|.|.++=+.|-|...||.+.-+-|.. +
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~-l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~-~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVV-LMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS-L 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhh-hccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch-h
Confidence 34555567779999999999999988887653 2222 224677899999999999999999999999877665532 2
Q ss_pred HHHhhcCCHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCC
Q 000200 482 ERSIEKLDDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 557 (1871)
Q Consensus 482 ~~~l~~Ld~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~ 557 (1871)
|+.-+...+ +|.+. . .+-.... .--+
T Consensus 897 ----------k~~LV~sL~~tl~~Gkr~-------~------------~~vs~eT--elFq------------------- 926 (1702)
T KOG0915|consen 897 ----------KKSLVDSLVNTLTGGKRK-------A------------IKVSEET--ELFQ------------------- 926 (1702)
T ss_pred ----------HHHHHHHHHHHHhccccc-------c------------ceeccch--hccc-------------------
Confidence 222222222 22110 0 0000000 0000
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH---Hhhhh--ccHHHHHHHHHHHHHHHHh-
Q 000200 558 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV---GQLKS--AVWKERLEAISSLRQQVEA- 631 (1871)
Q Consensus 558 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~---~~L~s--~~WK~RL~a~e~l~~~v~~- 631 (1871)
.|+-+..+ .+ -.--+.-|+...++++-.+|++ -+|.. +-|.-|+.|.=.+....+.
T Consensus 927 ----~G~Lg~Tp---~G-----------g~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a 988 (1702)
T KOG0915|consen 927 ----EGTLGKTP---DG-----------GKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA 988 (1702)
T ss_pred ----CCcCCCCC---CC-----------CcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH
Confidence 01100000 00 0012578999999999999986 44543 4499999988777655544
Q ss_pred hhccchhH-HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHH
Q 000200 632 VQNLDQSV-EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTT 708 (1871)
Q Consensus 632 ~~~~~~~~-~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~ 708 (1871)
.+...+.. +++-|.... =-|.|..|++.|-.|-..+..-...........++..+..-+++. ++|+.++-+|..
T Consensus 989 ~~kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 989 GEKLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHhhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33333332 333343331 158999999999999998876434455666677888888888886 789999888887
Q ss_pred HHHhhchHhHHHHH-------HHhhhhcCC-hhh-HHHHHHHHHHHHHHhccC--ccc----hHhHHHHHhhhcCCCccH
Q 000200 709 FSEAVGPGFIFERL-------YKIMKDHKN-PKV-LSEGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAA 773 (1871)
Q Consensus 709 ~aE~~~~~~V~~~l-------~~~~~~~Kn-PKv-~~e~l~wl~~ai~eFG~~--~~~----~K~li~~~k~~~l~~sN~ 773 (1871)
+-..-..+-+.+.+ +..+-+.|- -+. -..++..++..+-.-+-. +.. +..++.|+-+-|..|+=+
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 77655555444433 333323331 111 112344444444333321 111 235667776657779999
Q ss_pred HHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC----CccccccccccCCCCCCCCCCCCccc
Q 000200 774 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV----PKKTVRASESTSSVSSGGSDGLPRED 849 (1871)
Q Consensus 774 ~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~----p~R~~r~~~~~~~~~~~~~d~lprvD 849 (1871)
.||..+|+++..|-++-|..|++|+.++-|.++.....- + |-. ..|- .+.+.+. . |. -|..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l-E------~~vLnYls~r~--~~~e~ea----l-Dt-~R~s 1210 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL-E------PQVLNYLSLRL--INIETEA----L-DT-LRAS 1210 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc-c------hHHHHHHHHhh--hhhHHHH----H-HH-HHHh
Confidence 999999999999999999999999999999998765321 0 000 0111 0000000 0 00 0111
Q ss_pred cccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcCh
Q 000200 850 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 850 Is~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
+.. +++= +|+|+..|+ .|--..++|+.+-|..-+ +-.|-+=..-++.+|..|+.-+|.
T Consensus 1211 ~ak----------sspm-------meTi~~ci~----~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~ 1269 (1702)
T KOG0915|consen 1211 AAK----------SSPM-------METINKCIN----YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS 1269 (1702)
T ss_pred hhc----------CCcH-------HHHHHHHHH----hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc
Confidence 111 1111 344444442 222233567766665554 333444445677888899999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1008 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~ 1008 (1871)
...+|+.-++-..+-.+.|...++|.+.-.|+--.+.....+.+...+ ..++.|+ +....+
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi--------------e~~l~~~---l~k~es-- 1330 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI--------------ETLLADL---LGKDES-- 1330 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH--------------HHHHHHH---hccCCC--
Confidence 999999999999999999999999999988888777776655543322 2344443 322221
Q ss_pred chhhhhhHHhhhcCCCCHHHHH-HHHHHHHHHHHhcCHH
Q 000200 1009 DAAHLLKPASIAMTDKSSDVRK-AAEACIVEILRAGGQE 1046 (1871)
Q Consensus 1009 ~~~~~~~p~~~~L~Dr~~dVRk-aA~~~L~~~m~~~G~~ 1046 (1871)
..+..|.-+.. +.-...|+=+ .|+++||.+.-..-|+
T Consensus 1331 ~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1331 LKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred ccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 11223333333 6666666666 6778888666555555
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.19 E-value=0.0001 Score=101.49 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=166.9
Q ss_pred cchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHH
Q 000200 695 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAA 774 (1871)
Q Consensus 695 D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~ 774 (1871)
|+.+|..|.+.|..+. +.-++..|... .+..++-|+..++.-|..+.+... +.. .+... |++.|+.
T Consensus 634 d~~VR~~Av~~L~~~~----~~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~----~~~----~L~~~-L~~~d~~ 699 (897)
T PRK13800 634 DPGVRRTAVAVLTETT----PPGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLP----PAP----ALRDH-LGSPDPV 699 (897)
T ss_pred CHHHHHHHHHHHhhhc----chhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccC----chH----HHHHH-hcCCCHH
Confidence 3567777777776553 23345555554 478888888888776655432111 112 23344 7788888
Q ss_pred HHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000200 775 TRNATIKLLGALHKFVGPD--IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 852 (1871)
Q Consensus 775 VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~ 852 (1871)
||.+|+..|+.+.. |+. +...|.|..|.+....=.-..++ ..
T Consensus 700 VR~~A~~aL~~~~~--~~~~~l~~~L~D~d~~VR~~Av~aL~~~-----------------------------~~----- 743 (897)
T PRK13800 700 VRAAALDVLRALRA--GDAALFAAALGDPDHRVRIEAVRALVSV-----------------------------DD----- 743 (897)
T ss_pred HHHHHHHHHHhhcc--CCHHHHHHHhcCCCHHHHHHHHHHHhcc-----------------------------cC-----
Confidence 88888888887642 211 11122222222111111111110 00
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
.+.++.-+.|.+|-+|.++.+.|..+-+.. ..-...|...+.|.+..|...|+..++.+ |.+
T Consensus 744 --~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~~--- 805 (897)
T PRK13800 744 --VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAEL----GCP--- 805 (897)
T ss_pred --cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc----CCc---
Confidence 134667799999999999999998765321 22356677778999988888888877665 211
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000200 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~ 1012 (1871)
..+.+.++..|.|....||.+|..+|... |-..-++.+..+|.++ ++.+|.++..=|.+. ... ..
T Consensus 806 --~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~----~~~---~~ 870 (897)
T PRK13800 806 --PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW----PGD---PA 870 (897)
T ss_pred --chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----CCC---HH
Confidence 12335688999999999999999999654 4455667888888876 588999998887752 111 12
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
...++...|+|.+++||+.|..+|.
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 3344567889999999999999885
No 22
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.12 E-value=0.024 Score=72.45 Aligned_cols=337 Identities=19% Similarity=0.238 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---- 397 (1871)
...|++.+..+|..--..|-+.|++.|+.||.-|..- =.+-..-+-..+.|.++|-=+.|.-.+..||-+|+...
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 5678888888999888899999999999999999743 12234445556789999999999999999999998862
Q ss_pred -CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHH---HHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 398 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI---CMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 398 -~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~---l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
.-++.+++..+...|+||.-.|...+..++.+.-...+.-.. .+.++-+ |+..|---+.++|.+|.+.||-|.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVS---AREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 124678999999999999999999999999988766543221 1444444 445566788999999999999999
Q ss_pred HHhC-hhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCC
Q 000200 474 KSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP 552 (1871)
Q Consensus 474 k~~G-e~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 552 (1871)
+.+| .+.+..++++|+- +|.-.... +.-.-+ -
T Consensus 954 kaIGPqdVLatLlnnLkv------qeRq~Rvc----TtvaIa-------------------------------------I 986 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKV------QERQNRVC----TTVAIA-------------------------------------I 986 (1172)
T ss_pred HhcCHHHHHHHHHhcchH------HHHHhchh----hhhhhh-------------------------------------h
Confidence 9999 5667778888853 33322210 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 000200 553 ASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV 632 (1871)
Q Consensus 553 ~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~ 632 (1871)
+ + +...++
T Consensus 987 V----------------a-----------E~c~pF--------------------------------------------- 994 (1172)
T KOG0213|consen 987 V----------------A-----------ETCGPF--------------------------------------------- 994 (1172)
T ss_pred h----------------h-----------hhcCch---------------------------------------------
Confidence 0 0 000000
Q ss_pred hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccch--hhhHHHHHHHHHH
Q 000200 633 QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFS 710 (1871)
Q Consensus 633 ~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~a 710 (1871)
.+|--++ -.+.-.|..||+.+|..++.+.+.-+..++..++.++|-|-|-+.|.- .|..+..++.-++
T Consensus 995 -------tVLPalm---neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 -------TVLPALM---NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred -------hhhHHHH---hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0111111 124556888999999999999998888899999999999999999854 5788888777765
Q ss_pred HhhchHhH----HHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 711 EAVGPGFI----FERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 711 E~~~~~~V----~~~l~~~~~~---~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
=- .+.+- +-+|+..+.- --+|-|++.....|-.+=. .+.+..+..|+-. ||=|.-..||..=-.++
T Consensus 1065 Lg-~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~-----~Lg~~~~~~Y~~Q-GLFHParkVR~~yw~vy 1137 (1172)
T KOG0213|consen 1065 LG-VPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRV-----ALGPQAMLKYCLQ-GLFHPARKVRKRYWTVY 1137 (1172)
T ss_pred cC-CCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHH-----HhchHHHHHHHHH-hccCcHHHHHHHHHHHH
Confidence 43 22222 2233322221 2468777665544433332 2445688999987 59999999999999999
Q ss_pred HHHHhhhCchhHhhh
Q 000200 784 GALHKFVGPDIKGFL 798 (1871)
Q Consensus 784 ~~ly~~~G~~l~~~l 798 (1871)
-.||.+-.++|-.++
T Consensus 1138 n~my~~~~dalv~~y 1152 (1172)
T KOG0213|consen 1138 NSMYHGSQDALVACY 1152 (1172)
T ss_pred HhHhhcccchhhhcc
Confidence 999998888888777
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.97 E-value=0.0025 Score=82.77 Aligned_cols=389 Identities=15% Similarity=0.150 Sum_probs=256.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHH
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 369 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~ 369 (1871)
-..-+.+++-.+|+=+-=.+..+.... ++-.--.+..|.+=+.|.|-.+...|+++++.++. ...+..+++
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~ 117 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIP 117 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHH
Confidence 344456788888887666555543211 00122367788888889999999999999999982 345678899
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000200 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1871)
Q Consensus 370 ~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1871)
.+..-+.++.+.||.++.-|+-.++...--.+.+ +.+.+...+..++|.|+..++..+..+ ..++.....++..+..
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHH
Confidence 9999999999999999999999999872223445 689999999999999999999999988 3333332244566677
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH-----HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-----LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~-----l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
.+.+.+.+.+|-++-....+|..+...--+.. +..++.-|......-+-|++.-
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 77788899999887776666554332211111 1111111111111111111100
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
.. ....+.+ +...+-
T Consensus 255 ------------------i~------------------------------------------~l~~~~~-----~~~~~~ 269 (526)
T PF01602_consen 255 ------------------II------------------------------------------KLSPSPE-----LLQKAI 269 (526)
T ss_dssp ------------------HH------------------------------------------HHSSSHH-----HHHHHH
T ss_pred ------------------HH------------------------------------------HhhcchH-----HHHhhH
Confidence 00 0000111 112223
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV 682 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~-~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~ 682 (1871)
.-+...|.++++-.|.-+++.+....... +... ..++.+.++. .+.+..|-...++++..+++. ..+
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~ 337 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNV 337 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cch
Confidence 45678889999999999999998776664 3222 3444444443 467788999999999998864 245
Q ss_pred hhhccchhhccc---cchhhhHHHHHHHHHHHhhc--hHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000200 683 VLCLLGISERVA---DIKTRAHAMKCLTTFSEAVG--PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1871)
Q Consensus 683 ~~~l~~lveKlg---D~K~r~~a~e~L~~~aE~~~--~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K 757 (1871)
..++..+..-+. |.-.+..+...+..+++.+. .++.+..+++.+ ...++-+..+++..+...+....-. -.
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~ 413 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---RE 413 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hH
Confidence 556666666663 55688888999999999765 467888888875 6678899999999999999774322 12
Q ss_pred hHHHHHhhhcCC-CccHHHHHHHHHHHHHHHhhhCc
Q 000200 758 DLIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 758 ~li~~~k~~~l~-~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
.++..+.+. +. -.++.++.+++-++|+---++..
T Consensus 414 ~~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 414 KILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc
Confidence 234443333 33 47888999999999997766665
No 24
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=0.015 Score=77.30 Aligned_cols=183 Identities=19% Similarity=0.168 Sum_probs=133.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHccc-CCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ank-rI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1871)
.+.+.-+|.+|.+|.+.++-+-.++.+-.. ++-+. ++++ +..=+.|-=--+---|.+++..++...|+.+ +..
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~-~~~l---~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~ 556 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEK-LAEL---LRTWLPDHVYSIREAAARNLPALVETFGSEW--ARL 556 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHH-HHHH---HHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHH
Confidence 345556677999999999999888865321 11111 1222 2222444444555667888888999989333 455
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHH----hcccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000200 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1871)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L----~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~ 1011 (1871)
.++|-++...++..-.+|.+...++..++..+|-+...+++...+ .++ +|+.|-.++..|.+-++.+.. +...
T Consensus 557 ~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~-~~~~ 633 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDE-SVRD 633 (759)
T ss_pred HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcch-HHHH
Confidence 788999999999888999999999999999999766655544444 344 588999999999887766653 4567
Q ss_pred hhhhHHhhhc-CCCCHHHHHHHHHHHHHHHHhcCHHHH
Q 000200 1012 HLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1871)
Q Consensus 1012 ~~~~p~~~~L-~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1871)
..+.|+..+| .|.+.|||-.|+.+.+.++-+.-|..+
T Consensus 634 ~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~ 671 (759)
T KOG0211|consen 634 EEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSL 671 (759)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhH
Confidence 7788877777 799999999999999988776655543
No 25
>PTZ00429 beta-adaptin; Provisional
Probab=97.97 E-value=0.0094 Score=79.86 Aligned_cols=315 Identities=13% Similarity=0.148 Sum_probs=194.1
Q ss_pred HHhhhc-CChhhHHHHHHHHHHHHhhcc----hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCC------------
Q 000200 99 AAKCLT-GRPKTVEKAQAVFMLWVELEA----VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA------------ 161 (1871)
Q Consensus 99 veK~L~-~r~~tk~~a~e~~l~~vE~e~----~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~------------ 161 (1871)
+.|||+ ..|-.+..|.=|++.+..... ...+++.|...+..++|-|++.|+.++.++-...+-
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~L 224 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRL 224 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 578887 468888888888888765432 124667788889999999999999999888543220
Q ss_pred ------------------------Cc-cChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 162 ------------------------KI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 162 ------------------------~v-v~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
.- -....|+..+-+.+.|+|.+|-=+|.+++..+...+.++.++ ..+..+++.+
T Consensus 225 l~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pL 303 (746)
T PTZ00429 225 VYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTAL 303 (746)
T ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHH
Confidence 00 002347777778888999999999999888776655444332 2334455444
Q ss_pred HHHHHHHHHhcCCCCCCcchh--hhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhh
Q 000200 217 KKELEVELVNVSGTARPTRKI--RAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 294 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~--Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l 294 (1871)
+. | ....+-.||+ |.-..-. . ..| +++..-- .-|+-..
T Consensus 304 v~-L-------~ss~~eiqyvaLr~I~~i~-------~-----------------~~P-------~lf~~~~-~~Ff~~~ 343 (746)
T PTZ00429 304 LT-L-------SRRDAETQYIVCKNIHALL-------V-----------------IFP-------NLLRTNL-DSFYVRY 343 (746)
T ss_pred HH-h-------hCCCccHHHHHHHHHHHHH-------H-----------------HCH-------HHHHHHH-Hhhhccc
Confidence 32 1 1122334443 2221100 0 001 1111111 2477777
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 374 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLek 374 (1871)
.++.- .|.+.||-|..|++ +.|..++++.|+..+.|.+..++..++++||.+|..+ ...+..++..+++-
T Consensus 344 ~Dp~y-IK~~KLeIL~~Lan-----e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~----~~~a~~cV~~Ll~l 413 (746)
T PTZ00429 344 SDPPF-VKLEKLRLLLKLVT-----PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV----DSVAPDCANLLLQI 413 (746)
T ss_pred CCcHH-HHHHHHHHHHHHcC-----cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHH
Confidence 77765 79999999988753 3457899999999999999999999999999999764 44566666666666
Q ss_pred hccCCHHHHHHHHHHHHHHHHh----------------------------------cCCChh---hhHHHHHHHhhcCCc
Q 000200 375 LKEKKPTVAESLTQTLQAMHKA----------------------------------GCLNLV---DVVEDVKTSVKNKVP 417 (1871)
Q Consensus 375 lKEKK~~V~eAl~~aLda~~~~----------------------------------~~~~l~---~~~e~i~~al~~KnP 417 (1871)
+..+-.-+.+++ ..+-.++.. .|.-++ ++++.+...+....+
T Consensus 414 l~~~~~~v~e~i-~vik~IlrkyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~ 492 (746)
T PTZ00429 414 VDRRPELLPQVV-TAAKDIVRKYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQ 492 (746)
T ss_pred hcCCchhHHHHH-HHHHHHHHHCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCH
Confidence 655433333222 111111111 121122 233333333345678
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh-CCCCHHHHHHHHHHH
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVL 469 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-~Ds~~~VR~aA~~~l 469 (1871)
.||.+++.-..+++-..+... . ..+...+-.+. +|.+++|||.|+.-.
T Consensus 493 ~VqlqlLta~vKlfl~~p~~~-~---~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 493 RVQLAILSAAVKMFLRDPQGM-E---PQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHHHHHHHHHhcCcHHH-H---HHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 899999999888887665322 1 12233333443 568999999999644
No 26
>PRK09687 putative lyase; Provisional
Probab=97.95 E-value=0.00087 Score=80.38 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000200 709 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 709 ~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
-+.....++ +++.+ .+.++.|+.+++..+ ..+|- ..+++.+..+ +.+.|+.||..|+..||.+
T Consensus 19 ~~~~~~~~~----L~~~L-~d~d~~vR~~A~~aL----~~~~~-----~~~~~~l~~l-l~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 19 QCKKLNDDE----LFRLL-DDHNSLKRISSIRVL----QLRGG-----QDVFRLAIEL-CSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHhhccHHH----HHHHH-hCCCHHHHHHHHHHH----HhcCc-----chHHHHHHHH-HhCCCHHHHHHHHHHHHhc
Confidence 444444444 44443 789999998887664 34453 3566666667 8899999999999999874
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0018 Score=80.61 Aligned_cols=390 Identities=17% Similarity=0.153 Sum_probs=219.8
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc---cchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcCh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT---GELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~---geL~~aLk~rl---~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
+..+.+.++||-+--||.|--++++++.+ .+..|.+ -.++..|.+++ -++|.+= -.|-=+..++.|+|+
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~---l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~ 76 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKD---LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGI 76 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhcc
Confidence 45677889999999999999999999974 4444543 34555666766 2455433 344444556667899
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHh----cccCCcchHHHHHHHHHHHhc
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALT----DAKLGAEGRKDLFDWLSKQLT 1002 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~----~~~~~p~~r~e~l~wL~~~l~ 1002 (1871)
+-.+|...++|||+.||+|+--.||--|-++|.-++..+- .-.+++.|.++|- +.-.|..+=.|++.-|.+-..
T Consensus 77 ~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 77 KDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred ccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999998874 3344666777764 222355667888887776665
Q ss_pred cCCCCcchhhhhhHHhh-hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCC
Q 000200 1003 GLSGFPDAAHLLKPASI-AMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1081 (1871)
Q Consensus 1003 ~~~~~~~~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~ 1081 (1871)
......--.+...|++. .+-+.++.+|..-=.=|-.+-. +..-.|..++..+-+.-..
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~-------------------- 215 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFN-------------------- 215 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHH--------------------
Confidence 55443222334455444 7788899999643322222211 2222233332222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHH
Q 000200 1082 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQ 1161 (1871)
Q Consensus 1082 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve 1161 (1871)
...+++++.|.
T Consensus 216 ---------------------------------------------------~LsD~s~eVr~------------------ 226 (675)
T KOG0212|consen 216 ---------------------------------------------------MLSDSSDEVRT------------------ 226 (675)
T ss_pred ---------------------------------------------------HhcCCcHHHHH------------------
Confidence 01122222221
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHH--hccccchHHHHHHhhhhHHHH
Q 000200 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVL--QFCKSNTTCLLKVLEFLPELF 1239 (1871)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tl--r~~dtN~~vl~k~Le~l~~l~ 1239 (1871)
+ ...+++.=|+.-=-+.++-+.-.-++.+...+.+..+.+-. ..+.|+-- .++-++ ++.-.=.++..++
T Consensus 227 -~---~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~---~al~Wi~efV~i~g~~--~l~~~s~il~~iL 297 (675)
T KOG0212|consen 227 -L---TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQL---KALTWIQEFVKIPGRD--LLLYLSGILTAIL 297 (675)
T ss_pred -H---HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHH---HHHHHHHHHhcCCCcc--hhhhhhhhhhhcc
Confidence 1 11111111111001111111112223333333333222221 12566421 222221 1111111122222
Q ss_pred HHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHH
Q 000200 1240 DTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFL 1318 (1871)
Q Consensus 1240 ~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~l 1318 (1871)
.-+ ...-.|+-+|.+..+..++.|+=. ....---.++.|+..+. .-++.-+--||.+||+|+-.+
T Consensus 298 pc~-s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~-------------~~l~~~~~~tri~~L~Wi~~l 363 (675)
T KOG0212|consen 298 PCL-SDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLT-------------KYLSDDREETRIAVLNWIILL 363 (675)
T ss_pred cCC-CCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHH-------------HHhhcchHHHHHHHHHHHHHH
Confidence 222 233344677777777766666522 11110023444444433 345566778999999999999
Q ss_pred HHhhcCcc-cCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHh
Q 000200 1319 IDHHGAEI-SGQLKSLQIVASLTAERDGEIRKAALNTLATGYKIL 1362 (1871)
Q Consensus 1319 i~~~G~~v-~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~ 1362 (1871)
..++|-.+ +-..--+...=+.++|++..|---+|..++.+-.-.
T Consensus 364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 99999777 444456789999999999999999999998764433
No 28
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.81 E-value=0.089 Score=66.37 Aligned_cols=565 Identities=18% Similarity=0.203 Sum_probs=324.0
Q ss_pred ccCchhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhH------HHhhh
Q 000200 139 NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT------ILFEK 211 (1871)
Q Consensus 139 ~K~PKvvaaai~~l~~~l~~FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~------~L~~~ 211 (1871)
.|.-+..-.||.++.++-.-.|..+++ ++++++.+.+++.+...-||=-+.+-+-.+..-.||--+.. .|.++
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 468899999999999999999999886 99999999999999999999888888888888888622211 11111
Q ss_pred chHHHHHHHHHHHHhcCCCCCCc-------chhhhHHhHhhhhhhcccCCCCCCCCC------CCCCCCCCCCccccCCc
Q 000200 212 MRDTMKKELEVELVNVSGTARPT-------RKIRAEQDKELGQELISEDVGPGPSEE------STADVPPEIDEYELVDP 278 (1871)
Q Consensus 212 Lkp~q~keLe~efek~~~~~~P~-------R~~Rs~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iDp~dl~~~ 278 (1871)
...--=++|-... |.-|-.-|. -++|...+- .-.+- .+.++.+-. .-=+..+.+|||-|.+.
T Consensus 408 ~~~hrgk~l~sfL-kA~g~iiplm~peYa~h~tre~m~i-v~ref---~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 408 ASQHRGKELVSFL-KAMGFIIPLMSPEYACHDTREHMEI-VFREF---KSPDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHhcCCchHHHHH-HHhccccccCChHhhhhhHHHHHHH-HHHHh---CCchhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 1111112232221 222322121 012211110 00000 000000000 00012344678777765
Q ss_pred ccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh--hcCCCC-CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Q 000200 279 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA--STKRIA-PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 355 (1871)
Q Consensus 279 vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~--~~pKi~-~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g 355 (1871)
|- | .|+ +++|.+|...=...++.. .+--+. .+.-.-+++-+-.-..|---.--.+++..+..+-..
T Consensus 483 v~-----p--efF----~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~ 551 (975)
T COG5181 483 VS-----P--EFF----SPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSR 551 (975)
T ss_pred hc-----H--Hhh----chHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHh
Confidence 53 2 454 678998876622222100 000000 011112333333334455444444455555555555
Q ss_pred hc-cccc-cchhhhHHHHHHHhccCCHHHHH------HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHH-
Q 000200 356 LR-THFS-GSSRFLLPVLLEKLKEKKPTVAE------SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW- 426 (1871)
Q Consensus 356 Lr-~~F~-~y~~~~~~~lLeklKEKK~~V~e------Al~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~- 426 (1871)
|+ .+|. +-...++-.+|-.|-|.-.++-- ++..+++...+ -.+..++..|+..|+||.|.+|+..+..
T Consensus 552 lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k---p~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 552 LGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK---PHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC---cchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 54 3454 33455566666667666554321 11222332222 2366788999999999999999976655
Q ss_pred --HHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh----HHHHHhhcCCHHHHHHHHHHH
Q 000200 427 --VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR----PLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 427 --L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~----~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
|+..++++... +.+.-+--+++..++.-.|+|--.-..|+-.|....|.+ +++..+..|-|+-|+|=+...
T Consensus 629 ~sl~~vlk~c~e~---~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~ 705 (975)
T COG5181 629 GSLAKVLKACGET---KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVV 705 (975)
T ss_pred HHHHHHHHhcchH---HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHh
Confidence 44555555432 223456678999999999999999889999999999988 666666777777776654433
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 000200 501 AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 580 (1871)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~ 580 (1871)
...- . -+ +.+....|.
T Consensus 706 ~nti------------~---------------lv-----g~I~~~~pe-------------------------------- 721 (975)
T COG5181 706 ANTI------------A---------------LV-----GTICMNSPE-------------------------------- 721 (975)
T ss_pred hhHH------------H---------------HH-----HHHHhcCcc--------------------------------
Confidence 2100 0 00 000000000
Q ss_pred CCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh----------------------------
Q 000200 581 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV---------------------------- 632 (1871)
Q Consensus 581 ~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~---------------------------- 632 (1871)
-.+.-|-.. |-=+++..|.+.|=--|-+|.+.+-=.-+..
T Consensus 722 -------yi~~rEWMR-----IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI 789 (975)
T COG5181 722 -------YIGVREWMR-----ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAI 789 (975)
T ss_pred -------cCCHHHHHH-----HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhh
Confidence 001111000 1112333444433333444443331000000
Q ss_pred ---hccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHH
Q 000200 633 ---QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLT 707 (1871)
Q Consensus 633 ---~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~ 707 (1871)
.+.-.+-.+|--.++ .+.-.|..||+.+|..++.+.+.-+.-+...++.+.|-+-|-+.|. -.|..+..+++
T Consensus 790 ~iVae~cgpfsVlP~lm~---dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 790 SIVAEYCGPFSVLPTLMS---DYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhHhhcCchhhHHHHHh---cccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 000001112222221 3455788899999999999988777888999999999999999985 46888888887
Q ss_pred HHHHh---hchHhHHHHHHHhhhh---cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHH
Q 000200 708 TFSEA---VGPGFIFERLYKIMKD---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIK 781 (1871)
Q Consensus 708 ~~aE~---~~~~~V~~~l~~~~~~---~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~ 781 (1871)
-++=- ++-.=.+=+++..+.- --.|-|+....+.|...-.-.|. .++.+|+-. ||=|....||+.=-.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~-----g~~m~Yv~q-GLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS-----GAMMKYVQQ-GLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-hccCchHHHHHHHHH
Confidence 76543 3333334445444432 34788887666665555444454 588899887 699999999999999
Q ss_pred HHHHHHhhhCchhHhhh---hcchHHHHHHHH
Q 000200 782 LLGALHKFVGPDIKGFL---ADVKPALLSALD 810 (1871)
Q Consensus 782 Ll~~ly~~~G~~l~~~l---~dlkpall~~ie 810 (1871)
..-.||.+-.+++-+|+ +|.+|-+..+|+
T Consensus 941 vyn~myv~~~damvp~ypv~~d~n~e~~~~l~ 972 (975)
T COG5181 941 VYNIMYVFDSDAMVPCYPVEEDLNPELARTLH 972 (975)
T ss_pred HHhhhhhcccccccccccCCCCcCHHHHhhhh
Confidence 99999999999999888 677888777664
No 29
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.80 E-value=0.0021 Score=79.00 Aligned_cols=367 Identities=17% Similarity=0.184 Sum_probs=233.2
Q ss_pred hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhc---CChhhHHHHHHHHHHHHHHhccCc--cchHhHHHHHhhhcCCCcc
Q 000200 698 TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH---KNPKVLSEGILWMVSAVEDFGVSH--LKLKDLIDFCKDTGLQSSA 772 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~---KnPKv~~e~l~wl~~ai~eFG~~~--~~~K~li~~~k~~~l~~sN 772 (1871)
+++......+++.++..+-|... +.+.|-++ -.||.+.-.+++++...+++-..+ .+-++.-.-.++. +.+..
T Consensus 80 ~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~~t~~~~~s~rkm-~~~~~ 157 (516)
T KOG2956|consen 80 VKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSPNTKETKAAIRKM-FPWMF 157 (516)
T ss_pred HHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCCCCCcchhhhhhc-ccccc
Confidence 34555556777788877777666 66665433 379999999999999998775432 3444433333332 22211
Q ss_pred HH-----HHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCC-CCCc--c--cc-cccccc-------
Q 000200 773 AA-----TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT-VVPK--K--TV-RASEST------- 834 (1871)
Q Consensus 773 ~~-----VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~-p~p~--R--~~-r~~~~~------- 834 (1871)
+. +-...-+.++.+....-.+++..++++.|-...-.-+-.+.+..++. |.|. + +. +.+...
T Consensus 158 d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a~~e~~~~~~n~~~~~~~~P~ 237 (516)
T KOG2956|consen 158 DPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSAEKERFDSSNNKPSLPLSPPE 237 (516)
T ss_pred CchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchhhhcccccccccccccCCChh
Confidence 11 11122234444544456778888888888777666665555543322 2221 1 00 000000
Q ss_pred -CCC--------------CCCC--------------CCCCCc--cccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHH
Q 000200 835 -SSV--------------SSGG--------------SDGLPR--EDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILE 882 (1871)
Q Consensus 835 -~~~--------------~~~~--------------~d~lpr--vDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~ 882 (1871)
+.. +.+. .|.+++ +|= ..+..++++++.+. .=-.|++||-++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~-~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~ 316 (516)
T KOG2956|consen 238 EEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQ-SALVADLLKEISGSERASERKEALSELPKMLC 316 (516)
T ss_pred hcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcch-hHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 000 0000 011222 222 22345677777665 88899999999999997
Q ss_pred HcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch-hHHHHHHHHH
Q 000200 883 EANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVL 960 (1871)
Q Consensus 883 ~ankrI~p~~~geL~~aLk~rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~-~vR~aa~~al 960 (1871)
+..--+=..-|++|+-.+=..|.| .+-+....||++|+.+.++=-..+.-++-..+.-+|++=.|.-. .+|.|+-.|+
T Consensus 317 e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~ 396 (516)
T KOG2956|consen 317 EGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCL 396 (516)
T ss_pred ccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 531001011167888888899988 88888999999999999999999999999999999999999655 6666666667
Q ss_pred HHHHHhccchhhhHHHHHHHhcccCCcchH-HHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHH
Q 000200 961 DAWLAAVHLDKMVPYVTTALTDAKLGAEGR-KDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACI 1036 (1871)
Q Consensus 961 da~~~~~gl~~~~~~i~~~L~~~~~~p~~r-~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L 1036 (1871)
.......++..+. .|...+-+.- +-| .-++..+.+-+.....- ..+..+++.++..-+..+..|||.|==||
T Consensus 397 ~~las~~P~~~I~-~i~~~Ilt~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 397 TTLASHLPLQCIV-NISPLILTAD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred HHHHhhCchhHHH-HHhhHHhcCc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhH
Confidence 7776666665543 3344333211 012 23444566555555431 11223333477788999999999999999
Q ss_pred HHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000200 1037 VEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1871)
Q Consensus 1037 ~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1871)
..++..+|.+.|.+++..|-.+.+..|+=.++.+.
T Consensus 473 Vamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 473 VAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999888888887777764
No 30
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=9.7e-05 Score=86.46 Aligned_cols=178 Identities=19% Similarity=0.229 Sum_probs=154.7
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
-...|.|..|-...++|.-+-.|.. ++..-...+.+++=++-+-+..-+-.|...|+.|++.|...+......-...++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988765 555556678888888888888999999999999999999999999888999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hhHHHHhhhhhH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 447 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~ 447 (1871)
-.+|-|-.+-|..|||.+..||.++..+ .+...++..+..+++|.||.+|.-...-+.+|..... .+.....+..++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999986 7889999999999999999999988888888887653 112223456788
Q ss_pred HHHHhhhCCCCHHHHHHHHHHH
Q 000200 448 PICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
+.+-.-+.|+-|++|++|-..+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred HHHHhhhcccccccccchhHHH
Confidence 9999999999999999887443
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.28 Score=63.90 Aligned_cols=579 Identities=16% Similarity=0.176 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHH
Q 000200 300 SERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLe 373 (1871)
--|...||.|-=++.. |.--..-|.+++.++-.-.. ..+..|-..|.+|+-.=-.=-+.+|..- ...++..+.|
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 3455677777666642 33222346666666655543 5555666666666544444445567643 5566777788
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHH-----HHHHhhcCCchhHHHHHHHHHHHHhh---------------
Q 000200 374 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIET--------------- 433 (1871)
Q Consensus 374 klKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~-----i~~al~~KnP~vk~etl~~L~r~l~~--------------- 433 (1871)
-.--.-..|+.|+..||..++.-++..+.-.+++ .+.+|++-|+.|..++..|-....+.
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888999999999999987644444433333 45789999999999999998855431
Q ss_pred CChhHH---HHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000200 434 SSKAAV---LKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 434 ~~~~~~---~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
.++... ...++.++|.++++|. |-+=.+-+||..||.-+...+|.+.+...+. -|++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~--------Fiee~i--- 373 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLP--------FIEENI--- 373 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHH--------HHHHhc---
Confidence 121111 1234678888888882 2223467888899999999999776653332 222222
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000200 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1871)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1871)
T Consensus 374 -------------------------------------------------------------------------------- 373 (859)
T KOG1241|consen 374 -------------------------------------------------------------------------------- 373 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc--h----hHHHHHHHHHhcCC-C-ccc
Q 000200 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--Q----SVEILVRLVCMLPG-W-SEK 655 (1871)
Q Consensus 584 ~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~--~----~~~~lvr~l~~~Pg-w-kes 655 (1871)
.+-||+.|=+|+-.+-..+++.++.. . ..-.++.... +|. | +|+
T Consensus 374 ---------------------------~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdT 425 (859)
T KOG1241|consen 374 ---------------------------QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDT 425 (859)
T ss_pred ---------------------------CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchhhhcch
Confidence 22256666666666665555522210 0 0011222221 121 1 222
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhH
Q 000200 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 656 NfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~ 735 (1871)
--..+.+.++.+.. +++. ..-++-++.-++.++ +-.|+|-
T Consensus 426 aAwtlgrI~d~l~e----------------------~~~n----------------~~~l~~~l~~l~~gL--~DePrva 465 (859)
T KOG1241|consen 426 AAWTLGRIADFLPE----------------------AIIN----------------QELLQSKLSALLEGL--NDEPRVA 465 (859)
T ss_pred HHHHHHHHHhhchh----------------------hccc----------------HhhhhHHHHHHHHHh--hhCchHH
Confidence 22222232222221 0000 111222333344443 4456665
Q ss_pred HHHHHHH---HHHHHHhccCc----cch---HhHHHHHhh-hcCCC-ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000200 736 SEGILWM---VSAVEDFGVSH----LKL---KDLIDFCKD-TGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1871)
Q Consensus 736 ~e~l~wl---~~ai~eFG~~~----~~~---K~li~~~k~-~~l~~-sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1871)
+-++--+ .+++-+-+... ..- .++|.-+-+ .-..+ ..-+.|++|-..|++|-++.-.+..+.+..+-+
T Consensus 466 ~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l 545 (859)
T KOG1241|consen 466 SNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL 545 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 5544322 22333444332 111 122222211 11212 345799999999999999999888888888888
Q ss_pred HHHHHHHHHHh--cCCCCCCCCCccc-ccccccc-----C---CCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHH
Q 000200 804 ALLSALDAEYE--KNPFEGTVVPKKT-VRASEST-----S---SVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRL 871 (1871)
Q Consensus 804 all~~ie~EF~--K~~~~~~p~p~R~-~r~~~~~-----~---~~~~~~~d~lprvDIs~kit~~l~~~l~d-~~WK~Rk 871 (1871)
..+..|+.-.+ .... -.|. .+.=++. + ...+ . .+-.++++|-.-|+.-+++ +.=-+--
T Consensus 546 ~il~kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~--~---~~~~~~d~iM~lflri~~s~~s~~v~e 615 (859)
T KOG1241|consen 546 VILEKLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVG--S---DIREVSDQIMGLFLRIFESKRSAVVHE 615 (859)
T ss_pred HHHHHHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHcc--c---cchhHHHHHHHHHHHHHcCCccccchH
Confidence 88877776666 1111 0110 0000000 0 0000 0 2234566777778888887 3344677
Q ss_pred HHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCch
Q 000200 872 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK 950 (1871)
Q Consensus 872 EaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~ 950 (1871)
||+=+|..+++...++..--. ..+.+-|-.-| +-.--.|...|..++|.|+.+|+..|-+|+-.++..++.+|+...-
T Consensus 616 ~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~ 694 (859)
T KOG1241|consen 616 EAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL 694 (859)
T ss_pred HHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc
Confidence 888899888875432221111 22223333333 3344567788999999999999999999999999999999987543
Q ss_pred --hHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhccc---CCc----------chHHHHHHHHHHHhccCCC---Ccch
Q 000200 951 --HMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LGA----------EGRKDLFDWLSKQLTGLSG---FPDA 1010 (1871)
Q Consensus 951 --~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~---~~p----------~~r~e~l~wL~~~l~~~~~---~~~~ 1010 (1871)
+|.-+.+.+-.-++.+.| ++.-++++...|...+ .-| ++|..++.--.--+...+. ...+
T Consensus 695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~ 774 (859)
T KOG1241|consen 695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLV 774 (859)
T ss_pred cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Confidence 344455666666666665 4555555555554211 011 2566666554333333332 2234
Q ss_pred hhhhhHHhhhc------CCCCHHHHHHHHHHHHHHHHhcCHHHH
Q 000200 1011 AHLLKPASIAM------TDKSSDVRKAAEACIVEILRAGGQETI 1048 (1871)
Q Consensus 1011 ~~~~~p~~~~L------~Dr~~dVRkaA~~~L~~~m~~~G~~~~ 1048 (1871)
.+.+.+|++-+ .|-+..+-..|-.++|-+....|.+..
T Consensus 775 ~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~ 818 (859)
T KOG1241|consen 775 QPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVI 818 (859)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchh
Confidence 45666666522 343466677888899999888884433
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.62 Score=63.65 Aligned_cols=649 Identities=15% Similarity=0.159 Sum_probs=371.3
Q ss_pred hcCC-CCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccc-cc-cchhhhHHHHHHHhccCCHHHHHHHHH
Q 000200 314 STKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQ 388 (1871)
Q Consensus 314 ~~pK-i~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~-F~-~y~~~~~~~lLeklKEKK~~V~eAl~~ 388 (1871)
.+|+ +-..-|++....|..++. .+|-.|.-.++.|++.|-.+-... +. .-.+..+-.+|.=.-.+|+.||.+++.
T Consensus 81 ~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~ 160 (1176)
T KOG1248|consen 81 YVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQR 160 (1176)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4666 334458999999999998 999999999999999998885422 43 226778889999999999999999999
Q ss_pred HHHHHHHhcCCChhh-------hHHHHHHHhhcCC-chhHHHHHHHHH---HHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000200 389 TLQAMHKAGCLNLVD-------VVEDVKTSVKNKV-PLVRSLTLNWVT---FCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1871)
Q Consensus 389 aLda~~~~~~~~l~~-------~~e~i~~al~~Kn-P~vk~etl~~L~---r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1871)
++-++....|+-++. +....+.-++.+- +..-..++++|. ..+.+.|.. +++.++..|+.++.-+
T Consensus 161 ~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~----li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 161 GIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRP----LIKSLCEVLLNITTES 236 (1176)
T ss_pred HHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHH----HHHHHHHHHHhhcccc
Confidence 999998643333221 2222333333222 455555555543 222222333 3589999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhh
Q 000200 458 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 537 (1871)
Q Consensus 458 ~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1871)
+..|+-.+++||..+.+---. .|+...-.++-.++-..+ |+.. .+- ....=
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps~~---------D~~-----~t~~W 287 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PSEN---------DDL-----LTVAW 287 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CCcc---------chH-----HHHHH
Confidence 999999999999888754332 334333334444332211 0000 000 00000
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHH
Q 000200 538 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 617 (1871)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~ 617 (1871)
...+.. +... =..+..|-+...+-.+|+ -+.+ +..+.-++
T Consensus 288 ~~v~~~---------------------------------~~~~-----la~~q~~~~~~~~~~~~~-~~~t-~~~s~~~e 327 (1176)
T KOG1248|consen 288 LKVLNE---------------------------------AHDI-----LATLQEEKALQALPRLFS-LFFT-ILESLIEE 327 (1176)
T ss_pred HHHHHH---------------------------------HHHH-----HHHhCHHHHHHhhhhhhh-HHHH-HHhcccHH
Confidence 000000 0000 001112223333333332 2344 77777888
Q ss_pred HHHHHHHHHHHHHhhhc--cchhHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccc
Q 000200 618 RLEAISSLRQQVEAVQN--LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 694 (1871)
Q Consensus 618 RL~a~e~l~~~v~~~~~--~~~~~~~-lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlg 694 (1871)
++++.-.....|-.... .+.-|.- +-.++..+ | --|...+|.|+..+.+.++..+....--++.++++.=+
T Consensus 328 ~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~k--f----~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~ 401 (1176)
T KOG1248|consen 328 LVQAASQSLKEILKESVTVIDALCSKQLHSLLDYK--F----HAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRA 401 (1176)
T ss_pred HHHHHHHHHHHHhcccCcccHHHHHHHHHHHHcch--H----HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhc
Confidence 88876665544433111 1111222 22233221 1 13666778888888888777777777778888887433
Q ss_pred c--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH----hHHHHHhhhcC
Q 000200 695 D--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK----DLIDFCKDTGL 768 (1871)
Q Consensus 695 D--~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K----~li~~~k~~~l 768 (1871)
+ .=.+....+++-+..-+.||+-|+.-+==. . ++-..+..=.||--.|+++-. +-++- .++..+++ +
T Consensus 402 ~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLn---l-~~~s~~~~RsWLLPvLR~~i~-~A~La~F~~~ivpla~s--l 474 (1176)
T KOG1248|consen 402 SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLN---L-HAESLSFTRSWLLPVLRDYII-GASLAFFTEYIVPLAMS--L 474 (1176)
T ss_pred CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchh---c-cccccccchhHhHHHHHHhhc-cCcHHHHHHHHHHHHHH--H
Confidence 3 335668888888888899998877644222 2 666777788899999987654 23433 23333332 2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhCchhHhh--------------hhcchHHHHHHHHH--------------HHhcCC---
Q 000200 769 QSSAAATRNATIKLLGALHKFVGPDIKGF--------------LADVKPALLSALDA--------------EYEKNP--- 817 (1871)
Q Consensus 769 ~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~--------------l~dlkpall~~ie~--------------EF~K~~--- 817 (1871)
.+.-+.+..+....- +|.-++..||.. |.|+=|.+...|.. -.+.+.
T Consensus 475 ~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~ 552 (1176)
T KOG1248|consen 475 QLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSS 552 (1176)
T ss_pred HHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcc
Confidence 222223333332222 444444444432 22332333332222 222221
Q ss_pred -----------------------CCCCCCCcccc-----------c------ccccc--------CCCCCCCCCCCCccc
Q 000200 818 -----------------------FEGTVVPKKTV-----------R------ASEST--------SSVSSGGSDGLPRED 849 (1871)
Q Consensus 818 -----------------------~~~~p~p~R~~-----------r------~~~~~--------~~~~~~~~d~lprvD 849 (1871)
+.++++..|.. | ...+. +..+++.+ .-
T Consensus 553 ~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~-----~s 627 (1176)
T KOG1248|consen 553 DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD-----ES 627 (1176)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch-----hh
Confidence 11112212110 0 00000 00000000 11
Q ss_pred cccCCcH----------------------HHHhhcCCC-ChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhcc
Q 000200 850 ISGKFTP----------------------TLVKSLESP-DWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLY 905 (1871)
Q Consensus 850 Is~kit~----------------------~l~~~l~d~-~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~ 905 (1871)
++++++- ++....+.+ +=+++|-+.+=|++++.- ..........-++...|..-+.
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1111111 122333333 677778887777777742 0000111113567888888888
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH--h---cc-------chhhh
Q 000200 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA--A---VH-------LDKMV 973 (1871)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~--~---~g-------l~~~~ 973 (1871)
++-.-...-++.|+..|-...+..+....--++|-++-.++|-...-|+-+-+||-.+.. . -| +.+|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 888888899999999999999988888877788888778899999999999999988772 1 23 34455
Q ss_pred HHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000200 974 PYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1871)
Q Consensus 974 ~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~---~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1871)
..|...|.+.. +..+.-.+--+..-+.+ +-+...+..++.-+..+|..++++||++|=..+-.++..+.+..+.+
T Consensus 788 ~~Isagl~gd~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 788 SIISAGLVGDS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHhhhcccH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 55666555332 33444422222222322 32233455666778889999999999999999999999999998888
Q ss_pred HhhccCc
Q 000200 1051 NLKDIQG 1057 (1871)
Q Consensus 1051 ~~~~Lk~ 1057 (1871)
+...|=|
T Consensus 866 ~~~~LL~ 872 (1176)
T KOG1248|consen 866 HLEELLP 872 (1176)
T ss_pred hHHHHHH
Confidence 8755543
No 33
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.67 E-value=0.03 Score=70.42 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=127.1
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH---HHhhhccchhHhHHHHHHHHHHHHHH
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG---GLRGRLYDSNKNLVMATLITLGAVAS 924 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~---aLk~rl~DsNk~lv~~al~ii~~lA~ 924 (1871)
-+|.+.|||- +.++-=|+--.++.=|..|+..+.-.|.+ -|-++ .|-..|+--||-+-..|-+..|.|+.
T Consensus 687 ~~ilP~ltPI----Lrnkh~Kv~~nti~lvg~I~~~~peyi~~---rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 687 SGILPSLTPI----LRNKHQKVVANTIALVGTICMNSPEYIGV---REWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hhccccccHh----hhhhhHHHhhhHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 3566667774 44566777778888888888755433433 23333 34455567899999999999999999
Q ss_pred hcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 925 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 925 amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
|.||. -++-.++..|+-+.-+.|.+..-++...++.||.=.++|.+..-...|. .++...+|.-+.=.|.-+
T Consensus 760 aiGPq------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe--~nVQnGvLkam~fmFeyi 831 (975)
T COG5181 760 AIGPQ------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE--ANVQNGVLKAMCFMFEYI 831 (975)
T ss_pred hcCHH------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch--hHHHHhHHHHHHHHHHHH
Confidence 99974 3566778888888899999999999999999999999997655555453 335566665444333322
Q ss_pred CC-CcchhhhhhHHh-hhcCCCCHHHHHHHHHHHHHH
Q 000200 1005 SG-FPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 1005 ~~-~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.. ..+....+.|++ ..|+||++--|.-|..++-.+
T Consensus 832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 22 346677777855 499999999999988876544
No 34
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.26 Score=64.17 Aligned_cols=321 Identities=16% Similarity=0.246 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-------------CCCccc
Q 000200 615 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-------------KFPKKC 681 (1871)
Q Consensus 615 WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-------------~fs~~~ 681 (1871)
=-.|+.|.=.|+..+...++. ..-+..=||+... -|+-=||=..++..|..-.-+.+ ......
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~-~k~~~~qRWl~l~---~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~ 126 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPE-RKQQYQQRWLQLP---AEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ 126 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhh
Confidence 345777777787777664332 2345666777432 23444555555554441111111 122222
Q ss_pred hhhhccchhhccccch---hhhHHHHHHHHHHHhhchHhHHHHH-------HHhh-hhcCChhhHHHHHHHHHHHHHHhc
Q 000200 682 VVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFIFERL-------YKIM-KDHKNPKVLSEGILWMVSAVEDFG 750 (1871)
Q Consensus 682 ~~~~l~~lveKlgD~K---~r~~a~e~L~~~aE~~~~~~V~~~l-------~~~~-~~~KnPKv~~e~l~wl~~ai~eFG 750 (1871)
-.-++.-++..+|+.- +|+.+.+++--+||...|+.+..+. ..|+ +.--+-.||-.+++.|-..++=-+
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 3336667788888853 6899999999999999999444432 2232 234467889999998888885333
Q ss_pred cC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH--------HhhhCchh-----HhhhhcchHHHHHHH-----
Q 000200 751 VS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL--------HKFVGPDI-----KGFLADVKPALLSAL----- 809 (1871)
Q Consensus 751 ~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l--------y~~~G~~l-----~~~l~dlkpall~~i----- 809 (1871)
.. -.+.-.+...++++ -++.+..||.+|..+|+.+ -.|||++| ..+.++-...-++.|
T Consensus 207 ~nF~~E~ern~iMqvvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred HhhccHhhhceeeeeeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 12334566667887 8999999999999999864 35677643 345555555555544
Q ss_pred --HHHHh------cCCCCCCC-CCccccccc---------------cccCC-------CCCC----------CCCCCCcc
Q 000200 810 --DAEYE------KNPFEGTV-VPKKTVRAS---------------ESTSS-------VSSG----------GSDGLPRE 848 (1871)
Q Consensus 810 --e~EF~------K~~~~~~p-~p~R~~r~~---------------~~~~~-------~~~~----------~~d~lprv 848 (1871)
|+|++ .....+-| .-.++.|.. ++... .++| +||.+|
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-- 363 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-- 363 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--
Confidence 34444 22222222 223344431 11100 0010 233333
Q ss_pred ccccCCcHHHHh-hcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhc
Q 000200 849 DISGKFTPTLVK-SLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM 926 (1871)
Q Consensus 849 DIs~kit~~l~~-~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~am 926 (1871)
-+= .|++ ++.++||+.|-.|.=+...|++. .-.+++|-. -+.++.+-.-+.|++..+..+|.-++|+|+..+
T Consensus 364 ----~Vl-~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 364 ----HVL-PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMSDPSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred ----hhH-HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence 222 4777 69999999999999999999974 235677754 677788888889999999999999999999988
Q ss_pred ChhHH--hhhhhhhHHHHHHhccC
Q 000200 927 GPAVE--KSSKGVLSDILKCLGDN 948 (1871)
Q Consensus 927 G~~~~--k~~k~l~~~il~~l~D~ 948 (1871)
-..+- .|....++..++.|.|.
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhhC
Confidence 74432 34555566666666664
No 35
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=0.03 Score=74.62 Aligned_cols=382 Identities=20% Similarity=0.196 Sum_probs=247.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000200 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1871)
Q Consensus 325 eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~-- 402 (1871)
++.........|.+.+|=..+++=++.+|+++.+ ..-...++|....-..|-+.+||+++.+++..+..+ +.-+
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l--~~~~~d 312 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL--LDDDDD 312 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh--cCCchh
Confidence 4455556666799999999999999999999998 334667778888888999999999999999999997 3333
Q ss_pred ---hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000200 403 ---DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 403 ---~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
.+.+.+..+.+.+...+|.-+..|+...-...++... --...++....+.|...++|-+.+.=...+-..+.+.
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~---~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSAT---RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccC---cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 3456667777888888888777776665544333111 1235788888999999999988776555555444422
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCC
Q 000200 480 PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 559 (1871)
Q Consensus 480 ~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~ 559 (1871)
.+ .+--+..-.-.+++++.... . -++...++...+..|..+
T Consensus 390 ~~---~~i~~~~ilp~~~~lv~d~~---------------------~------~vr~a~a~~~~~~~p~~~--------- 430 (759)
T KOG0211|consen 390 CY---PNIPDSSILPEVQVLVLDNA---------------------L------HVRSALASVITGLSPILP--------- 430 (759)
T ss_pred cc---cccchhhhhHHHHHHHhccc---------------------c------hHHHHHhccccccCccCC---------
Confidence 11 11111111223444443210 0 000000000001111100
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH--HHhhhccch
Q 000200 560 VKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ--VEAVQNLDQ 637 (1871)
Q Consensus 560 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~--v~~~~~~~~ 637 (1871)
+ ++....+-+-.+.++.+-.=..|++.++-+... +......+.
T Consensus 431 -----------k------------------------~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 431 -----------K------------------------ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred -----------c------------------------CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 0 000112233444555666666777777644322 222222333
Q ss_pred hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC-CC-CccchhhhccchhhccccchhhhHHHHHHHHHHHhhch
Q 000200 638 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT-KF-PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP 715 (1871)
Q Consensus 638 ~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~-~f-s~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~ 715 (1871)
..+.++..+...-+|. |-.|..+.++.+..++...+ .| -.....+|..++.+++-. +|+.+...|..++|.+|.
T Consensus 476 ~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~--Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS--IREAAARNLPALVETFGS 551 (759)
T ss_pred hhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH--HHHHHHHHhHHHHHHhCc
Confidence 4566666555433344 88999999999999887654 33 344556677776665544 477888999999999998
Q ss_pred HhHHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000200 716 GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 716 ~~V~~~l~~~~---~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
+|-...+.... ..+.|-++|.-++.-+..+..-||-. +--+.++.++... ..+++|+||-.+.+.|-.+-.++-.
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e-i~~~~Llp~~~~l-~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE-ITCEDLLPVFLDL-VKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH-HHHHHHhHHHHHh-ccCCchhhhhhHHHHHHHHHhhcch
Confidence 88766554432 34667899999999999888888864 7789999999997 9999999999999988666665554
Q ss_pred h
Q 000200 793 D 793 (1871)
Q Consensus 793 ~ 793 (1871)
.
T Consensus 630 ~ 630 (759)
T KOG0211|consen 630 S 630 (759)
T ss_pred H
Confidence 3
No 36
>PRK09687 putative lyase; Provisional
Probab=97.31 E-value=0.0024 Score=76.57 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=120.6
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.+...+.+.....|.+++..|..+- ..+++..+.+.+.|.|..+-..|+.+++.|...=+. ..-.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~---------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a 91 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG---------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNV 91 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC---------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHH
Confidence 46788899999999999999987653 245667777778899999999999999997532110 2345
Q ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 368 LPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 368 ~~~lLek-lKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
++.+..- ++|+=+.||.++..+|--+...+.......++.+..++.+++|.||..+..=|. .... ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCC-------HHH
Confidence 6666655 689999999988888866543322234556777788899999999976655543 2221 235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 447 VPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
++.|+.+|+|.+++||..|..+||.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 78999999999999999999999988
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=97.30 E-value=0.13 Score=69.20 Aligned_cols=177 Identities=13% Similarity=0.094 Sum_probs=128.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
...|.+.+.|+|=-+|-=||..+-.|.. |..+..+...+++.+.|.|.-|-..|+-|+..+-.--. ... ..
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv-~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLF-YQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccc-cc
Confidence 4568889999999999999999865543 33456788999999999999999999999988854322 111 12
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhc-ccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTD-AKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~-~~~~p~~r~e~l~wL~~~l~~~~~~~~~~ 1011 (1871)
..+++.+.+.|.|+.+.|...|+.+|..+.+..+ ++...+.+...+.. +..|++++..+|+.|.+.-+.. ..+..
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~--~~e~~ 255 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD--KESAE 255 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--cHHHH
Confidence 3467778888999999999999999999987653 22223333333321 2347899999999997754322 23455
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.++.-+..+|..+|+.|-=+|-.++-.+...
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 6666778889999998888887777655443
No 38
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.96 E-value=0.039 Score=67.31 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=131.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCC---CCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--cccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRI---APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi---~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr--~~F~~y 363 (1871)
++.+.+.+++=+.|.++|+.+..++...-+ ..+.+..|+..+.+.|.=..-.=..+|+++++.++--|| ..-...
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 678888999999999999999887643322 235688999999999972223667899999999999988 333344
Q ss_pred hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHhcCCChhhh------HHHHHHH--hh--cC--------CchhHHHH
Q 000200 364 SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKAGCLNLVDV------VEDVKTS--VK--NK--------VPLVRSLT 423 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~--~V~eAl~~aLda~~~~~~~~l~~~------~e~i~~a--l~--~K--------nP~vk~et 423 (1871)
...+.|.|..-++|.-. .+|.++..||-.+.-.+|...+++ ++.|... .+ .+ +|.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 56677777777777643 455666666665544344444433 3322211 11 11 24565544
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+.=-.-.+...+...+...+...+|.++.+|+-.+.+||-||.++|+-|.-...
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 443344555566555666678889999999999999999999999999887665
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.72 E-value=0.011 Score=59.94 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 915 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 915 al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
++-.++.+|.|+|+.+.+|...++|+|+.+|.|+-.-||-+|-++|-.+...++
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999998877664
No 40
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=5 Score=55.39 Aligned_cols=629 Identities=17% Similarity=0.175 Sum_probs=326.0
Q ss_pred CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---------HHHH
Q 000200 318 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---------SLTQ 388 (1871)
Q Consensus 318 i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~e---------Al~~ 388 (1871)
+..+..-.++..|-.+.+-+++.|+..+++|+..|-++.-.. -.-.+..-+|..+-+-++++.+ ++.+
T Consensus 217 ~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~---l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~ 293 (1176)
T KOG1248|consen 217 FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA---LAAELNARLLTALMTLSPSENDDLLTVAWLKVLNE 293 (1176)
T ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 444678889999999999999999999999999998887652 1333334455555555555443 2233
Q ss_pred HHHHHHHhcC-C---ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHH
Q 000200 389 TLQAMHKAGC-L---NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 464 (1871)
Q Consensus 389 aLda~~~~~~-~---~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~a 464 (1871)
+.+.++...- . .+..+..-+.+.+..-++++=+++.+-+.+.++.+.. ... ..+-..+-..|+=+...|-+-
T Consensus 294 ~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~---~~c~~~~~~~l~~kf~~~~~~ 369 (1176)
T KOG1248|consen 294 AHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VID---ALCSKQLHSLLDYKFHAVWRF 369 (1176)
T ss_pred HHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccH---HHHHHHHHHHHcchHHHHHHH
Confidence 3333322100 0 0123334455667788888888888888888877654 111 122335778888888888888
Q ss_pred HHHHHHHHHHHhChh---HHHHHhhcCCHHH-------HHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhh
Q 000200 465 AFSVLAAIAKSVGMR---PLERSIEKLDDVR-------RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFV 534 (1871)
Q Consensus 465 A~~~l~~lmk~~Ge~---~l~~~l~~Ld~~k-------k~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1871)
.+..+..+.-.+|+. .|.+.|+.|+..+ +..|.+++..+- .+-+ |+
T Consensus 370 ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV------------~AmG-----Pe------- 425 (1176)
T KOG1248|consen 370 ILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAV------------RAMG-----PE------- 425 (1176)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHH------------HhhC-----HH-------
Confidence 888888888888863 3666666666533 345555554320 0000 00
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhcc
Q 000200 535 RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 614 (1871)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~ 614 (1871)
.... ..|-. +....++ +-..+++--|++--
T Consensus 426 -----~vL~------~lpLn-----------------------------l~~~s~~----------~~RsWLLPvLR~~i 455 (1176)
T KOG1248|consen 426 -----RVLT------ILPLN-----------------------------LHAESLS----------FTRSWLLPVLRDYI 455 (1176)
T ss_pred -----HHHH------Hcchh-----------------------------ccccccc----------cchhHhHHHHHHhh
Confidence 0000 00000 0000000 01111111111111
Q ss_pred -------HHHHHHH-HHHHHHHHHhhhccch---hHH-HHHHHHHhcCCCccchHHHHH---HHHHHHHHHHHhcCCCCc
Q 000200 615 -------WKERLEA-ISSLRQQVEAVQNLDQ---SVE-ILVRLVCMLPGWSEKNVQVQQ---QVIEVINYLAATATKFPK 679 (1871)
Q Consensus 615 -------WK~RL~a-~e~l~~~v~~~~~~~~---~~~-~lvr~l~~~PgwkesNfqV~~---~~leil~~la~~~~~fs~ 679 (1871)
|.+..-. .+.+...+..+.+.+. ..| +..++|.-.|||++.-.-+.. -.+-++....... .+.+
T Consensus 456 ~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr 534 (1176)
T KOG1248|consen 456 IGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELR 534 (1176)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhH
Confidence 1111111 1112222222221111 112 345566778999875443332 2333344333322 3555
Q ss_pred cchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHH-HHhccCccchHh
Q 000200 680 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV-EDFGVSHLKLKD 758 (1871)
Q Consensus 680 ~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai-~eFG~~~~~~K~ 758 (1871)
..+...+.-+++..-.++--....+.++.+|--.- -++=.+|......-+ ++..-+..||-.+. +.|-...=++-.
T Consensus 535 ~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL--~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~ 611 (1176)
T KOG1248|consen 535 ETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFL--PRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVG 611 (1176)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHH--HHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 66666666666654222222223334444432211 122233333211112 55666666666666 445443323322
Q ss_pred HHHHHhhhcCCCcc-HHH----HHHHHHHHHHHHhhhCchhHhhhhcchHH-HHHHHHHHHhcCCCCCCCCCcccccccc
Q 000200 759 LIDFCKDTGLQSSA-AAT----RNATIKLLGALHKFVGPDIKGFLADVKPA-LLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1871)
Q Consensus 759 li~~~k~~~l~~sN-~~V----R~aAi~Ll~~ly~~~G~~l~~~l~dlkpa-ll~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1871)
.+.-.-.. +.+.+ -+| +-+=+.++..+-.+. ++.+. .+-+++.+|++....+ .+.|.-|-=.
T Consensus 612 ~l~~s~~e-~as~~~~s~~~~~~~slLdl~~~~a~~~---------~e~~vs~l~~v~~~~e~~~~~~--vQkK~yrlL~ 679 (1176)
T KOG1248|consen 612 SLKDSAGE-LASDLDESVASFKTLSLLDLLIALAPVQ---------TESQVSKLFTVDPEFENSSSTK--VQKKAYRLLE 679 (1176)
T ss_pred HHHHHHHh-HhccchhhhhhHHHHHHHHHHHhhhccc---------cchhHHHHHHhhHHhhccccHH--HHHHHHHHHH
Confidence 22111111 22222 222 222233333333222 22221 2227888888874311 1222211100
Q ss_pred cc-CCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHH-HHhh---hccch
Q 000200 833 ST-SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRG---RLYDS 907 (1871)
Q Consensus 833 ~~-~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~-aLk~---rl~Ds 907 (1871)
+. ...++.+ +-.+-..-|-..+.+.+.+..-=.|+++|..+..|+...+ +..-+++. .+.. -++|-
T Consensus 680 ~l~~~~s~~~----~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-----~e~~~~i~k~I~EvIL~~Ke~ 750 (1176)
T KOG1248|consen 680 ELSSSPSGEG----LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-----AEHCDLIPKLIPEVILSLKEV 750 (1176)
T ss_pred HHhcCCchhh----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHhcccc
Confidence 00 0001100 0000011122345566777788889999999999997542 21123322 2222 22899
Q ss_pred hHhHHHHHHHHHHHHHH---hcChhHHh---hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-c------chhhhH
Q 000200 908 NKNLVMATLITLGAVAS---AMGPAVEK---SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H------LDKMVP 974 (1871)
Q Consensus 908 Nk~lv~~al~ii~~lA~---amG~~~~k---~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-g------l~~~~~ 974 (1871)
|..--..|..||-.|.. ..-.+-++ -..-+++-|-..|......++.+-+-++..++..- + +..+++
T Consensus 751 n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 751 NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 99888998888877762 22222122 12223333444455667777777677777665432 1 345566
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCCC---cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000200 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1051 (1871)
Q Consensus 975 ~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~---~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1871)
++.-+|.+. +++.+.-+.+|+......++.. +....++.-++.-+.|.+..+|++.-.+|..+++..|++.+...
T Consensus 831 ~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 831 MVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 777778754 6999999999999888877752 22333444466677888999999999999999999999999988
Q ss_pred hhc
Q 000200 1052 LKD 1054 (1871)
Q Consensus 1052 ~~~ 1054 (1871)
+..
T Consensus 909 ~pe 911 (1176)
T KOG1248|consen 909 LPE 911 (1176)
T ss_pred CHH
Confidence 763
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.70 E-value=0.01 Score=60.07 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHH
Q 000200 345 AIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1871)
Q Consensus 345 A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl 424 (1871)
++-++..+|-||++....|...++|++|..|.|.-..||-++-++|-.+.+. + |.+.+
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~---------------------~~~~l 63 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV-A---------------------RGEIL 63 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-H---------------------HHHHH
Confidence 5678899999999999999999999999999999999999998888888764 1 11111
Q ss_pred HHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 425 ~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
.+ ...+...+.+.+.|+++.||.+| +.|..++|
T Consensus 64 ~~----------------f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 64 PY----------------FNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HH----------------HHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 11 24456778899999999999998 45655553
No 42
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.018 Score=68.05 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=136.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
..+++|+|++|-.--+||--+..+.. =++.+-.+.+-+++-++-+-++.-+..|...|.-+++.|.++++..+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~-fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSE-FHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999986664 23444444567888888889999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcc----hhh
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD----AAH 1012 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~----~~~ 1012 (1871)
++-.++.+=++.|..||++|..+|.+++.++.-..+++.+..++.+.+ |..|...-.-..++...+...+- ...
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhc--hhhhhhhhccccccceeccccchhhHhHHH
Confidence 999999999999999999999999999999999999999999998653 44343332222222222211111 112
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHH
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIVE 1038 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~ 1038 (1871)
++..+-..+-|+-+++|++|.-++..
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~ 274 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLE 274 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHh
Confidence 22334457889999999988866543
No 43
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.23 E-value=5.9 Score=50.68 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=106.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHH----
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK---- 409 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~---- 409 (1871)
..-..|-..|++|+-.=.--.+.+|..- ...++....|-.--.-..+..|+-.||.-++.-++..+.-.+|-.+
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt 268 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT 268 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777766555556777632 5556777788888888999999999999887654555555565433
Q ss_pred -HHhhcCCchhHHHHHHHHHHHHhhC----------ChhHHH------HhhhhhHHHHHhhhCCCC-------HHHHHHH
Q 000200 410 -TSVKNKVPLVRSLTLNWVTFCIETS----------SKAAVL------KVHKDYVPICMECLNDGT-------PEVRDAA 465 (1871)
Q Consensus 410 -~al~~KnP~vk~etl~~L~r~l~~~----------~~~~~~------~~~k~~~~~l~k~l~Ds~-------~~VR~aA 465 (1871)
.+|++.|-+|+.++..|-....+.. +..+.. ..+++++|.++++|+..+ =.+-.+|
T Consensus 269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 4678999999999999885444321 100100 124778999999984322 2467899
Q ss_pred HHHHHHHHHHhChhHHHHHhh
Q 000200 466 FSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 466 ~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
..||--+....|...|++.++
T Consensus 349 ~sCLqlfaq~~gd~i~~pVl~ 369 (858)
T COG5215 349 SSCLQLFAQLKGDKIMRPVLG 369 (858)
T ss_pred HHHHHHHHHHhhhHhHHHHHH
Confidence 999999999999998888664
No 44
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.17 E-value=1.3 Score=57.87 Aligned_cols=102 Identities=22% Similarity=0.298 Sum_probs=79.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChh----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh-hhh
Q 000200 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKD 445 (1871)
Q Consensus 371 lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~-~k~ 445 (1871)
+++.|.+.+...++.+..+|+.++.. ..+. ++.+.+..+|.|.+|.||.-++.=|.|+..+... ...-+ -..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~--~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA--LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCcc
Confidence 77777777777778888888888875 3444 4556777899999999999999999999865432 11111 145
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
+++.++.|+.|.+.+|.+.|..+|..+.+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~ 149 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH 149 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999888765
No 45
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.16 E-value=0.0067 Score=48.29 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.1
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
++|.++++++|++++||.+|..+|+.+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 46
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=5.6 Score=56.03 Aligned_cols=480 Identities=19% Similarity=0.309 Sum_probs=276.8
Q ss_pred HHHhhhhcCChhhHHHHHHHHHHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh
Q 000200 722 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL 798 (1871)
Q Consensus 722 l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l 798 (1871)
.+......-||-.|.+.+.||-+.+.-.|-. .+..+.+..---.. |+..|-=+...|-.=+|-+|-.-|.+++.-|
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~-Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHL-LSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHH-hcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 3333356779999999999999999999922 34555555333444 9999999999999999999987776666433
Q ss_pred hcchHHHHHHHHHHHhcCCCCCCCCCcccccccccc-CCCCCCCC-----CCCC-ccccccCCcHHH-Hhhc----CCCC
Q 000200 799 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGS-----DGLP-REDISGKFTPTL-VKSL----ESPD 866 (1871)
Q Consensus 799 ~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~-~~~~~~~~-----d~lp-rvDIs~kit~~l-~~~l----~d~~ 866 (1871)
=..|+.++-. .|-....-..-|.-. +... +..+.||. |+.- .-|+ + -|++ |+=| ...-
T Consensus 901 ---V~sL~~tl~~--Gkr~~~~vs~eTelF--q~G~Lg~Tp~Gg~isTYKELc~LASdl-~--qPdLVYKFM~LAnh~A~ 970 (1702)
T KOG0915|consen 901 ---VDSLVNTLTG--GKRKAIKVSEETELF--QEGTLGKTPDGGKISTYKELCNLASDL-G--QPDLVYKFMQLANHNAT 970 (1702)
T ss_pred ---HHHHHHHHhc--cccccceeccchhcc--cCCcCCCCCCCCcchHHHHHHHHHhhc-C--ChHHHHHHHHHhhhhch
Confidence 1234444433 111000000000000 0000 11111110 0000 0000 1 1333 3333 3445
Q ss_pred hHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc
Q 000200 867 WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 946 (1871)
Q Consensus 867 WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~ 946 (1871)
|.-|+=|-=-+.+|..+|.-.++|.. +.|++-|-.==-|-+++|+..-..|-..|-+--..-.++|..-++-.+|-.|+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999988899986 88887774433799999998888888888887777889999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh-------cccCCcchHHHHHHHHHHHhccC----C---C---Ccc
Q 000200 947 DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------DAKLGAEGRKDLFDWLSKQLTGL----S---G---FPD 1009 (1871)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~-------~~~~~p~~r~e~l~wL~~~l~~~----~---~---~~~ 1009 (1871)
++-=-||+|+--||.-....=..+.+.+.|.+.+. +-+. -.| ++-+-.++.+.+. - . ..+
T Consensus 1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE--sVR-~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE--SVR-EAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 99999999999999988888777777776555443 1110 112 2222222222221 1 1 123
Q ss_pred hhhhhhHHh--hhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 000200 1010 AAHLLKPAS--IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKV 1087 (1871)
Q Consensus 1010 ~~~~~~p~~--~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~ 1087 (1871)
....+.|.+ .+++.+-.+||+.+-..+--+.++.|- .+.+++.+| |--.++..
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~-~lkP~~~~L-------Ip~ll~~~----------------- 1181 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK-ELKPHFPKL-------IPLLLNAY----------------- 1181 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh-hhcchhhHH-------HHHHHHHc-----------------
Confidence 344444522 255677777777766655555555554 112222211 11111111
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhccccccCCChhHHHHHHHHH
Q 000200 1088 PKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDM 1167 (1871)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~f~~pr~e~ve~L~~q~ 1167 (1871)
..|+.|.
T Consensus 1182 -------------------------------------------------------------------------s~lE~~v 1188 (1702)
T KOG0915|consen 1182 -------------------------------------------------------------------------SELEPQV 1188 (1702)
T ss_pred -------------------------------------------------------------------------cccchHH
Confidence 1122222
Q ss_pred HHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCC
Q 000200 1168 MKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247 (1871)
Q Consensus 1168 ~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y 1247 (1871)
-.+++--+ ......|||.+...+.... ..++-++..+.|+ |- +||. |++..+.+.++..=.
T Consensus 1189 LnYls~r~--------~~~e~ealDt~R~s~akss-pmmeTi~~ci~~i-----D~--~vLe---elip~l~el~R~sVg 1249 (1702)
T KOG0915|consen 1189 LNYLSLRL--------INIETEALDTLRASAAKSS-PMMETINKCINYI-----DI--SVLE---ELIPRLTELVRGSVG 1249 (1702)
T ss_pred HHHHHHhh--------hhhHHHHHHHHHHhhhcCC-cHHHHHHHHHHhh-----hH--HHHH---HHHHHHHHHHhccCC
Confidence 22222111 2223344444433322111 1222233333332 11 1221 233333344444334
Q ss_pred cccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc-cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc
Q 000200 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA-TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 1326 (1871)
Q Consensus 1248 ~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~-skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v 1326 (1871)
-=|..-++.|+-.|+.++|-- .-|+ .|++.-++-|++-+|+-.|.-|-.-+|++. +++-
T Consensus 1250 l~Tkvg~A~fI~~L~~r~~~e-----------------mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~---k~Ss 1309 (1702)
T KOG0915|consen 1250 LGTKVGCASFISLLVQRLGSE-----------------MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA---KFSS 1309 (1702)
T ss_pred CCcchhHHHHHHHHHHHhccc-----------------cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH---hcCC
Confidence 446677888999999888752 1222 367777788999999999999999999997 4432
Q ss_pred cCcc-chH-HHHHHHhccCCh--hHHHHHHH
Q 000200 1327 SGQL-KSL-QIVASLTAERDG--EIRKAALN 1353 (1871)
Q Consensus 1327 ~~~~-Kal-~~ia~~i~drD~--~VR~AALn 1353 (1871)
+.+. |-+ +.++.+.+++++ .++.+-+.
T Consensus 1310 ~dq~qKLie~~l~~~l~k~es~~siscatis 1340 (1702)
T KOG0915|consen 1310 PDQMQKLIETLLADLLGKDESLKSISCATIS 1340 (1702)
T ss_pred hHHHHHHHHHHHHHHhccCCCccchhHHHHH
Confidence 2232 333 788888898888 66666554
No 47
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.85 E-value=0.024 Score=61.23 Aligned_cols=113 Identities=29% Similarity=0.503 Sum_probs=84.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
..+.+.||-. +-.|++..|.. +..-.|.+++|++||...|.+++..||.++..+..=.|..|... .+-|
T Consensus 16 ~~~~~~Dw~~-------~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~f 86 (140)
T PF00790_consen 16 ESLPSPDWSL-------ILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEF 86 (140)
T ss_dssp TTSSS--HHH-------HHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHH
T ss_pred cCCCCCCHHH-------HHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHH
Confidence 3456678853 23344333333 44448999999999999999999999999999999999999765 4567
Q ss_pred hHHHHHHhccCchh----HHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 938 LSDILKCLGDNKKH----MRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 938 ~~~il~~l~D~K~~----vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
+-.+...+.+++.. ||+-+++.+..|....+-++-+..|.+...
T Consensus 87 l~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 87 LDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYK 134 (140)
T ss_dssp HHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHH
T ss_pred HHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHH
Confidence 77777777766554 899999999999999976666666655543
No 48
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.78 E-value=0.072 Score=57.87 Aligned_cols=110 Identities=18% Similarity=0.339 Sum_probs=85.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+...||-.=. .||+.-|.. +++.-|.+++|++||...|.+++..||.++..++.=.|+.|-.. .+-|+.
T Consensus 13 l~~~dw~~il-------~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGLIL-------DVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHHHH-------HHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 4557895433 334332322 44457999999999999999999999999999999999999865 677888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.+...+.+ .-..|++-++..+..|.....-+.=+..|.+..
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 125 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLY 125 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 88888888 678999999999999998886554444444433
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.76 E-value=6.9 Score=51.30 Aligned_cols=387 Identities=15% Similarity=0.164 Sum_probs=225.4
Q ss_pred cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHH
Q 000200 729 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSA 808 (1871)
Q Consensus 729 ~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ 808 (1871)
..++.....++..|..++..+-...+ ...+.+++.. ||.|.||.||.-+.+.++-+-..-...+..
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~------------ 114 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAAQL------------ 114 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHHHH------------
Confidence 33778888888888888887766555 5667778877 499999999999988754433211100000
Q ss_pred HHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCC
Q 000200 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 888 (1871)
Q Consensus 809 ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI 888 (1871)
+. ...+-+.++.-+.+++=.+-++|...+..|.. ++..
T Consensus 115 ------------------------------------~~----~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~ 152 (503)
T PF10508_consen 115 ------------------------------------LV----DNELLPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEG 152 (503)
T ss_pred ------------------------------------hc----CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC--Cchh
Confidence 00 01133456777899999999999999999984 2211
Q ss_pred CCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000200 889 QPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1871)
Q Consensus 889 ~p~~-~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1871)
-... -+++...|+.-+..+|-.+...++.++..|+..--..++.. -.++++.++..|.+.-..|+-.+++.+...+..
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~ 232 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET 232 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence 1111 12337778887866677777778888877765544444433 236999999999999999999999999988875
Q ss_pred c-cchh-----hhHHHHHHHhcccCCc-c------hHHHHHHHHHHHhccCCCCcc----hhhhhhHHhhhcCCCCHHHH
Q 000200 967 V-HLDK-----MVPYVTTALTDAKLGA-E------GRKDLFDWLSKQLTGLSGFPD----AAHLLKPASIAMTDKSSDVR 1029 (1871)
Q Consensus 967 ~-gl~~-----~~~~i~~~L~~~~~~p-~------~r~e~l~wL~~~l~~~~~~~~----~~~~~~p~~~~L~Dr~~dVR 1029 (1871)
- |+.- +++-+...+.+...+| . ++-..++-++ .. .+.. ...++.-++.+++..+...|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la----~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA----RV-SPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH----hc-ChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 4 3322 2333555555444455 1 2222222222 11 1111 23334446667789999999
Q ss_pred HHHHHHHHHHHHhc-CHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q 000200 1030 KAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVI 1108 (1871)
Q Consensus 1030 kaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1871)
-.|-+.+|.+-... |...+. .+-.+.-...+..+.+..+.
T Consensus 308 ~~A~dtlg~igst~~G~~~L~---~~~~~~~~~~l~~~~~~~~~------------------------------------ 348 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLL---QKQGPAMKHVLKAIGDAIKS------------------------------------ 348 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHH---hhcchHHHHHHHHHHHHhcC------------------------------------
Confidence 99999999775433 444441 11111122222222221110
Q ss_pred CCCCCCCCccccchhhhhhhhhhcccCCCChHHHHh-hhhcc-c--cccCCChhHHHHHHHHHHHhhhHH----HHHhhc
Q 000200 1109 PTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRER-MVVRR-F--KFEDPRIEQIQELENDMMKYFRED----LHRRLL 1180 (1871)
Q Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~-~~~~k-w--~f~~pr~e~ve~L~~q~~~~~~~~----l~~~lf 1180 (1871)
++ -+-|.| +..+. | ..++...+++-.+...+-..++.. ++-.+.
T Consensus 349 ---~~-------------------------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~ 400 (503)
T PF10508_consen 349 ---GS-------------------------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLL 400 (503)
T ss_pred ---Cc-------------------------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 00 000100 00000 0 111122333433333343333322 444555
Q ss_pred ccCHHH-HHHHHHHHHHhcCCC-hhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHH
Q 000200 1181 STDFKK-QVDGLEMLQKALPSI-RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1243 (1871)
Q Consensus 1181 ~~d~k~-~l~al~~l~~~l~~~-~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~ 1243 (1871)
...|-+ |++|+..|....... .-..+.+.-=++.|++=|-.|+|..+.....++++.+.....
T Consensus 401 ~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 401 KQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred cCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 677776 899999988776543 112233344466787778899999999999999887665444
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.68 E-value=0.066 Score=60.14 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCH
Q 000200 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1871)
+.||.-+.-++--++..+..-++..++.+...|.+++|.||..++.-|++.+.+.- .+.-..++..++.++.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCCCH
Confidence 45666666666555544233466688899999999999999999999999987531 12213345778899999999
Q ss_pred HHHHHHHHHHHHHHHHhChhHH
Q 000200 460 EVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+||+.|..+|..+.+..+...+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999988554444
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.65 E-value=0.02 Score=51.44 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 417 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
|.||..++.-|.++.. .......+++..++|.+..+|+|++++||.+|+.+||.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6788888888877333 333444566788999999999999999999999999864
No 52
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.61 E-value=0.033 Score=54.33 Aligned_cols=86 Identities=19% Similarity=0.363 Sum_probs=68.1
Q ss_pred hhHHHHhh-CCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHH
Q 000200 1258 LPCLVEKS-GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV 1336 (1871)
Q Consensus 1258 lP~Lv~K~-Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~i 1336 (1871)
||.|+..+ .|+...||.. .++.++.+ ...++.++|.+.++++|+.+|..++..||.+ | ..++++.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~---a~~~L~~~-~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-----~~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAE---AARALGEL-GDPEAIPALIELLKDEDPMVRRAAARALGRI----G-----DPEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHH---HHHHHHCC-THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-----HHHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHH---HHHHHHHc-CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----CHHHHHHH
Confidence 68888888 8888888865 55555544 3458999999999999999999999999975 3 35677777
Q ss_pred HHHhcc-CChhHHHHHHHHHH
Q 000200 1337 ASLTAE-RDGEIRKAALNTLA 1356 (1871)
Q Consensus 1337 a~~i~d-rD~~VR~AALn~l~ 1356 (1871)
.+++.+ .|..||.+|+.+|+
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhcC
Confidence 776654 67778999999886
No 53
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.28 Score=60.81 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=158.1
Q ss_pred cCcCchhHHHHHHHHHHHHhhhcCCCCchhhhh----------hhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhh
Q 000200 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRE----------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 89 (1871)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~----------~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~ 89 (1871)
..|-.=|+|..|.--+..+.+++..-.-.-|+. -+.|+-=.++|.|+-...-+++.+.+++..+.. +-.
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~-fls 83 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQ-FLS 83 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHH-HHH
Confidence 345556899999888877776542211111111 022333469999999999999988877765422 111
Q ss_pred hhhHHHHHHHHhhhcC----ChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000200 90 YAKEVCDAIAAKCLTG----RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1871)
Q Consensus 90 ~~~~~~~~lveK~L~~----r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~ 165 (1871)
.+.+ +-.-.|+- -+-..--+..|+++..|.| -.|-++..||.++..++.+--...+.
T Consensus 84 ~a~~----~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e---------------~~~~~~tq~~kcla~lv~~~p~~~l~ 144 (728)
T KOG4535|consen 84 VAED----TSDHAFTPFSVMIACSIRELHRCLLLALVAE---------------SSSQTVTQIIKCLANLVSNAPYDRLK 144 (728)
T ss_pred HHhc----cCCcCCCchHHHHHHHHHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHhcCchHHHH
Confidence 1000 00001110 0000112344555444443 34778888888888888765443332
Q ss_pred ---hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHH-
Q 000200 166 ---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQ- 241 (1871)
Q Consensus 166 ---~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q- 241 (1871)
+-.+.-.++++..|+|++||-.+..+.+.|- |-..+ +..+|. -| +.+...|.....-
T Consensus 145 ~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v---~t~~~-------~pei~~-~~--------~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 145 LSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV---STHAP-------LPEVQL-LL--------QQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH---hcCCC-------CHHHHH-Hh--------cCCCccccccCCCC
Confidence 2345677899999999999999988766553 31110 111221 11 1111111110000
Q ss_pred ---hHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhh------hhhcc--ChHHHHHHHHHHH
Q 000200 242 ---DKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWE------GVKAT--KWSERKDAVAELT 310 (1871)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~------~l~s~--KWkeRkEaLe~l~ 310 (1871)
+-=.+- . .|+...+-..+++.+...|--++.++--..-+|+.|=|. .+++. -=--|.|+++-|.
T Consensus 206 s~~~~~~~l---~--~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~ 280 (728)
T KOG4535|consen 206 SPPDWWKKL---P--AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLT 280 (728)
T ss_pred CChHHHHhc---C--CCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHH
Confidence 000000 0 001000001111222223444555554334444433221 11110 1236889998887
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc
Q 000200 311 KLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 361 (1871)
Q Consensus 311 ~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~ 361 (1871)
.+...--+..+-+.+|.|++.+.+.|.--.+-.-+++|+..+..+++....
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 776555555566789999999999999999999999999999999984443
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.53 E-value=0.1 Score=53.23 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=83.6
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCC-hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLN-LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---~~~-l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1871)
.+++.+++.+++....++..+..||-.++... +.. +. ++++.+...|.+.+|.++..++..|.+.....+. ...
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HHH
Confidence 47899999999999999999989988887530 000 22 6678888999999999999999988888765432 222
Q ss_pred Hhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 441 KVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 441 ~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
.+. ..+++.+.+++++.+.++|+.+..+|..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233 348999999999999999999999998763
No 55
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.52 E-value=0.085 Score=56.54 Aligned_cols=110 Identities=22% Similarity=0.371 Sum_probs=83.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=. .|++.-|.. +.+-.|.+++|++||...|.+++..||.++..+..=.|++|... .+-|+.
T Consensus 13 l~~~dw~~~l-------~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWELIL-------EICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHHHH-------HHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 4567886433 334333333 44447999999999999999999999999999999999999765 556888
Q ss_pred HHHHHhccCch--hHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 940 DILKCLGDNKK--HMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 940 ~il~~l~D~K~--~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.+...+.+... .|++.++..+..|.....-++=++.|.+..
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y 126 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQIVDVY 126 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 77777776544 299999999999999886555555555444
No 56
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.25 E-value=2.1 Score=52.63 Aligned_cols=262 Identities=19% Similarity=0.186 Sum_probs=168.1
Q ss_pred hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH-hhhCchhH
Q 000200 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH-KFVGPDIK 795 (1871)
Q Consensus 717 ~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly-~~~G~~l~ 795 (1871)
..+..+++.+ .++++-++..+... +.+ +..+..+.-+.+. +.+.++.||..|+..||.+- ....+.+.
T Consensus 43 ~~~~~~~~~l-~~~~~~vr~~aa~~----l~~-----~~~~~av~~l~~~-l~d~~~~vr~~a~~aLg~~~~~~a~~~li 111 (335)
T COG1413 43 EAADELLKLL-EDEDLLVRLSAAVA----LGE-----LGSEEAVPLLREL-LSDEDPRVRDAAADALGELGDPEAVPPLV 111 (335)
T ss_pred hhHHHHHHHH-cCCCHHHHHHHHHH----Hhh-----hchHHHHHHHHHH-hcCCCHHHHHHHHHHHHccCChhHHHHHH
Confidence 3445555553 45566666655544 223 3344666666776 88889999999988776654 33445555
Q ss_pred hhhh-cchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhc------------
Q 000200 796 GFLA-DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL------------ 862 (1871)
Q Consensus 796 ~~l~-dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l------------ 862 (1871)
.+++ |.+.-.....-.-+.++..+.. + ..+++.+
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~~~~~a--------------------------------~-~~l~~~l~~~~~~~a~~~~ 158 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKLGDERA--------------------------------L-DPLLEALQDEDSGSAAAAL 158 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhcCchhh--------------------------------h-HHHHHHhccchhhhhhhhc
Confidence 5554 4544444444444444322110 0 0122222
Q ss_pred CCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHH
Q 000200 863 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 942 (1871)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il 942 (1871)
.+..|..|..+++.+..+-. .+.+..|+..+.|.+..+...|..-++.+...+ ..+.+.+.
T Consensus 159 ~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~ 219 (335)
T COG1413 159 DAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLV 219 (335)
T ss_pred cchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHH
Confidence 33558899999998876553 567788899999999977777777777666555 56778889
Q ss_pred HHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcC
Q 000200 943 KCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1022 (1871)
Q Consensus 943 ~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~ 1022 (1871)
..++|....+|.++..++... |...-.+.+...+.+. ++..+.....|+. .........++..-+.
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~----~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 285 (335)
T COG1413 220 KALSDESLEVRKAALLALGEI----GDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLI 285 (335)
T ss_pred HHhcCCCHHHHHHHHHHhccc----CcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhh
Confidence 999999999999999888665 4455556667777743 3455555555554 1123344556777889
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 1023 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 1023 Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
|.+..+|..+...++.+-..............-
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 318 (335)
T COG1413 286 DEANAVRLEAALALGQIGQEKAVAALLLALEDG 318 (335)
T ss_pred cchhhHHHHHHHHHHhhcccchHHHHHHHhcCC
Confidence 999999999998888776665555555554443
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.17 E-value=0.04 Score=56.14 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=83.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc-cchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~-geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
+.+++-+.+.+|..|..|+..+..+.... +....... .+.++.|..-|.|.|..++..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 45778889999999999999999988521 11111111 25677888888999999999999999999986544444444
Q ss_pred -hhhhHHHHHHhccCchhHHHHHHHHHHHHH
Q 000200 935 -KGVLSDILKCLGDNKKHMRECTLTVLDAWL 964 (1871)
Q Consensus 935 -k~l~~~il~~l~D~K~~vR~aa~~alda~~ 964 (1871)
..+++.+++.+.+....+|..+..+|...+
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999999887653
No 58
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.13 E-value=0.1 Score=55.96 Aligned_cols=108 Identities=22% Similarity=0.407 Sum_probs=82.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||..=.|=-| +|+ .. +.+-.|.+++|++||+..|.+++..||.++..+..=.|++|... .+-++-
T Consensus 13 ~~~~D~~~il~icd----~I~---~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWALNLELCD----LIN---LK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHHHHHHHHH----HHh---CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 45688875433333 332 11 44458999999999999999999999999999999999999764 336777
Q ss_pred HHHHHhccC---chhHHHHHHHHHHHHHHhccch-hhhHHHHH
Q 000200 940 DILKCLGDN---KKHMRECTLTVLDAWLAAVHLD-KMVPYVTT 978 (1871)
Q Consensus 940 ~il~~l~D~---K~~vR~aa~~alda~~~~~gl~-~~~~~i~~ 978 (1871)
.++..+..+ ...||.-+++.+..|....+-+ .-++.+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~~~~~~ 126 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIED 126 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788777764 5689999999999999988754 43444443
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.05 E-value=0.14 Score=49.92 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=68.1
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 368 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 368 ~~~lLekl-KEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
+|.+++.+ +|+-+.||..+..+|- . ..-.+.++.+...+++++|.||.++...|.+. +. ...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~---~---~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~-------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG---E---LGDPEAIPALIELLKDEDPMVRRAAARALGRI----GD-------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH---C---CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH-------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH---H---cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC-------HHH
Confidence 57899999 9999999987666655 2 34567889999999999999999999888854 11 345
Q ss_pred HHHHHhhhCC-CCHHHHHHHHHHHH
Q 000200 447 VPICMECLND-GTPEVRDAAFSVLA 470 (1871)
Q Consensus 447 ~~~l~k~l~D-s~~~VR~aA~~~l~ 470 (1871)
++.+.+.+.| .+..||.+|..+||
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888887755 56778999999986
No 60
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.91 E-value=0.14 Score=55.46 Aligned_cols=111 Identities=20% Similarity=0.339 Sum_probs=85.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||-.=.|=-|.|. + . +.+-.|.+++|++||...|.+++..||.++..+..-.|..|-.. .+-|+
T Consensus 16 ~l~~~dw~~ileicD~In-----~-~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl 86 (142)
T cd03569 16 LLGEPDLASILEICDMIR-----S-K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFM 86 (142)
T ss_pred ccCccCHHHHHHHHHHHh-----C-C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHH
Confidence 346778875544444442 1 1 23337999999999999999999999999999999999999764 66788
Q ss_pred HHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
..+...+.+ ..+.|++-++..+..|....+-++=++.|.++.
T Consensus 87 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y 129 (142)
T cd03569 87 DELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYVVDTY 129 (142)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 888887764 455799999999999999887665555555444
No 61
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.31 Score=61.07 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=137.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCC-CCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p-~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
+.....+..|+.|--..--+-++..+ +.+.. ..+|+++..|..|..|.|-.+...|+.+++..|++|-.++.+|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~~--~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKRP--KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhCc--ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 33456778999999888888888852 34442 3369999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHH---HHHHHh--cccCCcchHHHHHHHHHHHhccCCCC---
Q 000200 937 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY---VTTALT--DAKLGAEGRKDLFDWLSKQLTGLSGF--- 1007 (1871)
Q Consensus 937 l~~~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~---i~~~L~--~~~~~p~~r~e~l~wL~~~l~~~~~~--- 1007 (1871)
++-+|+..|=| ....|.-.++.||....+....+.+-++ ++.-+. -...+++.|...+--.. .|......
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg-~L~~l~g~~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFG-ALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHH-HHHHHcCCCch
Confidence 99999888876 3467888888888888877765555442 222221 01235777877654332 33333221
Q ss_pred ----cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q 000200 1008 ----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1053 (1871)
Q Consensus 1008 ----~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~ 1053 (1871)
...+.-..|++-.|+|+++-|-+|-...+-+....++-+.......
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 1234456789999999999998887776655555555555554444
No 62
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.53 E-value=0.27 Score=60.08 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=116.0
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHc--ccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC--hhHHh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEA--NKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVEK 932 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~a--nkrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG--~~~~k 932 (1871)
+.+..+.+|+=+.|.+||+.+..++..- ..+|... +.+|..++.+.++-.+..=...|+++++.++.-+| .....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~-~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR-RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 4678889999999999999999999631 1123322 36778888887755555667899999999999988 55566
Q ss_pred hhhhhhHHHHHHhccCch--hHHHHHHHHHHHHH--Hhccchhhh---HHHH-----HHHh-cccC-------Ccch-HH
Q 000200 933 SSKGVLSDILKCLGDNKK--HMRECTLTVLDAWL--AAVHLDKMV---PYVT-----TALT-DAKL-------GAEG-RK 991 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~--~vR~aa~~alda~~--~~~gl~~~~---~~i~-----~~L~-~~~~-------~p~~-r~ 991 (1871)
....+.|.+...+.|.-. .+|.+++.||-... ...+.+.+. +.|- ..++ +++. ++.+ =.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 677788888888888654 57788887776443 333444433 2211 1222 1110 1122 23
Q ss_pred HHHHH--HHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 992 DLFDW--LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 992 e~l~w--L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
-+-.| |...++...-.......+..+...|+..+.+||.+|-++|.-+..
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344 443332210011123334447778899999999999999976644
No 63
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.84 Score=57.41 Aligned_cols=211 Identities=15% Similarity=0.112 Sum_probs=149.6
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.|.+.+.+.+|++|.-..--+.++...+.+.+ |..++++..|..+..|.|-.+-..|+.|++..|.|+......|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 34456889999999987777777766555554 78999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh---
Q 000200 368 LPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK--- 436 (1871)
Q Consensus 368 ~~~lLeklKEKK-~~V~eAl~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~--- 436 (1871)
+-.|+--+=|-- ..|.--+..||.-+... .+.. ++...+.+..+.-++++|...+..+.-...-..+
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~--~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEK--ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHh--hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 999888876543 23333334555555443 2222 3334556778899999998887766655443221
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
..+...++.=...++-.++|++|.|-.|....+-+..--++-+.+..+..+.-+..+..+.++++
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 11211222112346668899999998888888777777777677777776443555657777765
No 64
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.36 E-value=2 Score=54.85 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=145.9
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCC-ChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 372 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lL 372 (1871)
....+-.|.-+++-+-.++ +|..++ ...+++..+...+ .+.+...-..++.++.-++|||=-+-.+.+..++..++
T Consensus 200 ~~~~~~~~~~~~~~la~Lv--NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV--NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHH--cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4455889998888766554 446554 4777888777777 57888888899999999999996666788999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHh--cCCC---------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000200 373 EKLKEKKPTVAESLTQTLQAMHKA--GCLN---------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 373 eklKEKK~~V~eAl~~aLda~~~~--~~~~---------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+-|.+ +.+...+..++.-++.- .+.+ +..++..+.+..+.-+...|..-+.=|.-.+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 66777777888777653 0101 34566677777777777788888888999999999
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
+..+...+..++|.++.+|+=.+++||.++.++|-.++.-- ...+..+++
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~ 405 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLS 405 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 99888888999999999999999999999999888887665 444555554
No 65
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.25 E-value=0.36 Score=52.36 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=83.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+...||-.=.|=-|.| |. ++++.-|.+++|++||. ..|.+++..||.++..++.=.|+.|-.. .+-|+
T Consensus 14 l~~~dw~~ileicD~I-------n~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNMEICDII-------NE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHHHHHHHH-------hC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4566887554444443 22 34444799999999997 4689999999999999999999999875 56788
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.. ++..+.++. ..|++-++..+..|.....-++=++.|.+...
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 131 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYE 131 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 87 677776433 48999999999999999866655555555443
No 66
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.02 E-value=0.5 Score=51.13 Aligned_cols=98 Identities=15% Similarity=0.287 Sum_probs=78.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.|--|.| + . +|++.-|-+++|++||...|.+++..||.++..++.=.|+.|... .+-|+.
T Consensus 14 l~~~dw~~ileicD~I----n---~--~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWEAIQAFCEQI----N---K--EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHHHHHHHHHHH----H---c--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 4577886433333333 2 1 455446899999999999999999999999999999999999765 577999
Q ss_pred HHHHHhcc------CchhHHHHHHHHHHHHHHhcc
Q 000200 940 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 940 ~il~~l~D------~K~~vR~aa~~alda~~~~~g 968 (1871)
.++..+.+ .-..|++-.+..+..|.....
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998864 347999999999999998876
No 67
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.99 E-value=0.69 Score=56.37 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCc-cchH---HHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHH
Q 000200 869 VRLESIEAVNKILEEANKRIQPAGT-GELF---GGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 944 (1871)
Q Consensus 869 ~RkEaLe~v~~il~~ankrI~p~~~-geL~---~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~ 944 (1871)
+..-|||-.+-|.+ +|.+..+ .|+. ..|=.-+.-+-..|...-++++...=.-+|+......++++.+++-.
T Consensus 71 VH~KaLevY~~IF~----~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpG 146 (307)
T PF04118_consen 71 VHQKALEVYEYIFE----RIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPG 146 (307)
T ss_pred HHHHHHHHHHHHHH----hcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 46778999888884 5666542 3443 34445567888899999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCC------C--------Ccch
Q 000200 945 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPDA 1010 (1871)
Q Consensus 945 l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~------~--------~~~~ 1010 (1871)
|-|...-+-+-+...++.+...+|-+.|...+-..+.+ ||..|.-++.|+.++++... . .++.
T Consensus 147 Lede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 223 (307)
T PF04118_consen 147 LEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP 223 (307)
T ss_pred cccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc
Confidence 99999999999999999999999999898888777763 57899999999999999876 1 2344
Q ss_pred hhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1011 AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1011 ~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
.-++..+++||+|.+-=|++.+-++|-.-+
T Consensus 224 ~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 224 GLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 556677889999999999998888774443
No 68
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.89 E-value=1.3 Score=49.73 Aligned_cols=111 Identities=18% Similarity=0.278 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH-HHHHHHhhcCCc
Q 000200 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-EDVKTSVKNKVP 417 (1871)
Q Consensus 339 v~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~-e~i~~al~~KnP 417 (1871)
..|-..++-+++.|+.. |...+-..+|.+..+|.|.-+.||..+..+|.-+...+.+.....+ -.++..+.+.||
T Consensus 2 ~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 45566777888888765 5556677789999999999999999999999998877666666554 888899999999
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1871)
.||..+..|+.+......+..+ ....|-++..+++.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCc
Confidence 9999999999999987444333 44556566666653
No 69
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=28 Score=45.77 Aligned_cols=279 Identities=17% Similarity=0.147 Sum_probs=164.8
Q ss_pred hHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHh-hCCchhhH
Q 000200 128 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRW-IGKDPVKT 206 (1871)
Q Consensus 128 ~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~w-lG~~~lk~ 206 (1871)
.+...+.......-+.|...|+..|-++=+ |+|. .|.+.+...+++.+.+-.||.+|.+|+-..-.- .|+- ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~--e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKL--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL--ER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccc--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc--cc
Confidence 445556666677789999999998866544 7753 478899999999999999999998886443222 2331 11
Q ss_pred HHhhhchHHHHHHHHHHHHhcCCC----CCCcc----------------------------hhh-hHHhHhhhhhhcccC
Q 000200 207 ILFEKMRDTMKKELEVELVNVSGT----ARPTR----------------------------KIR-AEQDKELGQELISED 253 (1871)
Q Consensus 207 ~L~~~Lkp~q~keLe~efek~~~~----~~P~R----------------------------~~R-s~q~~~~~~~~~~~~ 253 (1871)
.- + -.+-.++.|.++... .-..| .+| ..-+.+ ...+-..
T Consensus 272 e~-~-----e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahk--rpk~l~s 343 (823)
T KOG2259|consen 272 ES-E-----EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHK--RPKALYS 343 (823)
T ss_pred hh-h-----hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhccc--chHHHHh
Confidence 00 1 123344445443100 00000 011 000000 0001111
Q ss_pred CCC--CCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhh-hcCCCCCCChHHHHHHH
Q 000200 254 VGP--GPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTL 330 (1871)
Q Consensus 254 ~~~--~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~-~~pKi~~~dy~eL~~~L 330 (1871)
.|+ .|-.-++..+.++.|. +.+.|.+-=-=..|.-.+++-=.-.|+.|++.+..|. +.|.+...-+.=|+.+
T Consensus 344 ~GewSsGk~~~advpsee~d~----~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM- 418 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDE----EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDM- 418 (823)
T ss_pred cCCcccCccccccCchhhccc----cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-
Confidence 111 0111112223333332 2333321110124566666666778999999999975 6788875433334444
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHH
Q 000200 331 KKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 410 (1871)
Q Consensus 331 kk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~ 410 (1871)
++|---.|-..|+..+..|+.-+ .--...++.|++.+-|.-..||+++++-|-.. . ++=-++++....
T Consensus 419 ---fNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~---~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 419 ---FNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNA-R---VSDLECIDMCVA 486 (823)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C---CCcHHHHHHHHH
Confidence 45655667788999999999873 23456799999999999999999999887643 1 222234444443
Q ss_pred Hh-h--cCCchhHHHHHHHHHHHHhhCChh
Q 000200 411 SV-K--NKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 411 al-~--~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
.| + .|.|+=|-+++.-+.+.=++++.-
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhccChhh
Confidence 33 2 688999999999888888877543
No 70
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.68 E-value=30 Score=44.80 Aligned_cols=357 Identities=16% Similarity=0.178 Sum_probs=201.3
Q ss_pred cccc-hhhhHHHHHHHhccC-------CHHHHHHHHHHHHHHHHhcCCC--hhhhHHHHHHHhhcCCchhHHHHHHHHHH
Q 000200 360 FSGS-SRFLLPVLLEKLKEK-------KPTVAESLTQTLQAMHKAGCLN--LVDVVEDVKTSVKNKVPLVRSLTLNWVTF 429 (1871)
Q Consensus 360 F~~y-~~~~~~~lLeklKEK-------K~~V~eAl~~aLda~~~~~~~~--l~~~~e~i~~al~~KnP~vk~etl~~L~r 429 (1871)
|++. +.-++|.+|.-|--. -=++--|+..||.-+++. |-. +..+++-|-.-+.+.+..-|....--+.-
T Consensus 314 fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 314 FARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 4433 344677766554322 225667888999988765 321 33344445555566676666655555555
Q ss_pred HHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCC
Q 000200 430 CIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1871)
Q Consensus 430 ~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~ 509 (1871)
.+.......+.+++.+.+|.+...++|+.--|.+.++.|+|.|.-++-+- +.|- ..|-...-+-..-..+-
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~-i~p~-~Hl~~~vsa~liGl~D~------- 463 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI-ISPC-GHLVLEVSASLIGLMDC------- 463 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh-cCcc-ccccHHHHHHHhhhhcc-------
Confidence 66655667778888889999999999999999999999999999887642 2211 11211111111111110
Q ss_pred CCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 000200 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1871)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1871)
|. +. ....... ....--- | ++. ..+ +.-+
T Consensus 464 --p~--~~-------------~ncsw~~-~nlv~h~-a-----------------------~a~--------~~~-~S~l 492 (858)
T COG5215 464 --PF--RS-------------INCSWRK-ENLVDHI-A-----------------------KAV--------REV-ESFL 492 (858)
T ss_pred --ch--HH-------------hhhHHHH-HhHHHhh-h-----------------------hhh--------ccc-cchh
Confidence 00 00 0000000 0000000 0 000 000 0000
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHH---HhcCCCccchHHHHHHHHH
Q 000200 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLV---CMLPGWSEKNVQVQQQVIE 665 (1871)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~~lvr~l---~~~PgwkesNfqV~~~~le 665 (1871)
.-.-++.+..++.. +.+...+...|..+++.|...|.- .+. .++++.-+. .++ -|.-.+|+...+.
T Consensus 493 -~~fY~ai~~~Lv~~---t~~~~Ne~n~R~s~fsaLgtli~~~~d~---V~~~~a~~~~~~~~k---l~~~isv~~q~l~ 562 (858)
T COG5215 493 -AKFYLAILNALVKG---TELALNESNLRVSLFSALGTLILICPDA---VSDILAGFYDYTSKK---LDECISVLGQILA 562 (858)
T ss_pred -HHHHHHHHHHHHHH---HHhhccchhHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHHHH---HHHHHHHhhhhhh
Confidence 11222222233222 444467788999999999887765 222 234443322 222 2334444443332
Q ss_pred H-----HHHHHHhcCCCCccchhhhccchhhcccc-c-hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHH
Q 000200 666 V-----INYLAATATKFPKKCVVLCLLGISERVAD-I-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEG 738 (1871)
Q Consensus 666 i-----l~~la~~~~~fs~~~~~~~l~~lveKlgD-~-K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~ 738 (1871)
. +..+-++ ...++..+|-+-+- + -+-+...+++..+-|...|.++++.++-...
T Consensus 563 ~eD~~~~~elqSN--------~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIs----------- 623 (858)
T COG5215 563 TEDQLLVEELQSN--------YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAIS----------- 623 (858)
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHH-----------
Confidence 1 1111111 12344445544443 2 2456678899999999999999999887642
Q ss_pred HHHHHHHH-HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHH
Q 000200 739 ILWMVSAV-EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 812 (1871)
Q Consensus 739 l~wl~~ai-~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~E 812 (1871)
-|...+ +.|- .-+..++.|+-.+ |.-++-.|-..|+.|+|.+-.-+|.+++.|-.++--.|.+.|..+
T Consensus 624 --al~~sl~e~Fe---~y~~~fiPyl~~a-ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 624 --ALSTSLEERFE---QYASKFIPYLTRA-LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred --HHHHHHHHHHH---HHHhhhhHHHHHH-hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 233323 2443 2356788998887 999999999999999999999999999888777666666666544
No 71
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=6.8 Score=51.95 Aligned_cols=341 Identities=18% Similarity=0.173 Sum_probs=195.7
Q ss_pred chhH-hHHHHHH-HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhh--hHHHHHHHh
Q 000200 906 DSNK-NLVMATL-ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKM--VPYVTTALT 981 (1871)
Q Consensus 906 DsNk-~lv~~al-~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~--~~~i~~~L~ 981 (1871)
|||+ ..+..|+ .||++||.|=. +..++|+|++...-+..-|+.-.-==|-.+++.-.=-.+ +.+++.+|+
T Consensus 45 dSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~ 118 (968)
T KOG1060|consen 45 DSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALK 118 (968)
T ss_pred hccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhc
Confidence 4444 4555555 57788877533 778999999999999999988887777777766543333 348999999
Q ss_pred cccCCcchHHHHHHHHHHHhccCCCCcchhhhhh-HHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhH
Q 000200 982 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK-PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL 1060 (1871)
Q Consensus 982 ~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~-p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~ 1060 (1871)
+| ||..|. |-.|.|..++-+ -..+++. .+-.|..|-++-||+.|.-+++.+.. |+|.-+
T Consensus 119 Dp--N~LiRa----sALRvlSsIRvp-~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-------------Ld~e~k 178 (968)
T KOG1060|consen 119 DP--NQLIRA----SALRVLSSIRVP-MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-------------LDPEQK 178 (968)
T ss_pred CC--cHHHHH----HHHHHHHhcchh-hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-------------CChhhH
Confidence 88 465555 444556566532 2233322 24459999999999999998877654 777788
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChH
Q 000200 1061 ALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKE 1140 (1871)
Q Consensus 1061 ~~i~~~l~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 1140 (1871)
..+++++++-=.. .++ . +-+.+.
T Consensus 179 ~qL~e~I~~LLaD-----------------------------~sp-l------------------VvgsAv--------- 201 (968)
T KOG1060|consen 179 DQLEEVIKKLLAD-----------------------------RSP-L------------------VVGSAV--------- 201 (968)
T ss_pred HHHHHHHHHHhcC-----------------------------CCC-c------------------chhHHH---------
Confidence 8888888886320 000 0 001111
Q ss_pred HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCC--------------Ch----
Q 000200 1141 DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS--------------IR---- 1202 (1871)
Q Consensus 1141 ~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~--------------~~---- 1202 (1871)
..|++-=+|.++.+..-.... -+.|-.-|--.++-.|.||.+.-.+ ++
T Consensus 202 ---------~AF~evCPerldLIHknyrkl-----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~ 267 (968)
T KOG1060|consen 202 ---------MAFEEVCPERLDLIHKNYRKL-----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCN 267 (968)
T ss_pred ---------HHHHHhchhHHHHhhHHHHHH-----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccc
Confidence 225544455555442221111 1111111111244556666653211 00
Q ss_pred ----------h-hhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh-HHhhhhhHHHHhhC---C
Q 000200 1203 ----------K-DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES-EAAVFLPCLVEKSG---H 1267 (1871)
Q Consensus 1203 ----------~-~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~-Ea~~flP~Lv~K~G---d 1267 (1871)
. ..=.-++|+|+-..==|+..|++|.+.|-... |+|..- +...|+-.||--+- .
T Consensus 268 ~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~-----------y~lAP~~~~~~i~kaLvrLLrs~~~ 336 (968)
T KOG1060|consen 268 LKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF-----------YHLAPKNQVTKIAKALVRLLRSNRE 336 (968)
T ss_pred ccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH-----------HhhCCHHHHHHHHHHHHHHHhcCCc
Confidence 0 00124778888766667889999999865433 333332 44444444444332 2
Q ss_pred ChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCChhh-HhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCCh
Q 000200 1268 NIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNNRT-RIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDG 1345 (1871)
Q Consensus 1268 ~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~r~-R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~ 1345 (1871)
.+..|-+.+..+..+-..+|- ||+-. =+.|+-+-+ ..==|+.|..|+..-.+. --|++.-.+|.+.|.
T Consensus 337 vqyvvL~nIa~~s~~~~~lF~-----P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-----~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 337 VQYVVLQNIATISIKRPTLFE-----PHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-----EILRELQTYIKSSDR 406 (968)
T ss_pred chhhhHHHHHHHHhcchhhhh-----hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-----HHHHHHHHHHhcCch
Confidence 444444444444433333321 23221 113333322 222367777776554432 247899999999998
Q ss_pred hHHHHHHHHHHHHHHHhch
Q 000200 1346 EIRKAALNTLATGYKILGE 1364 (1871)
Q Consensus 1346 ~VR~AALn~l~~~y~~~Gd 1364 (1871)
.|-.+|+.+||-+-..+|.
T Consensus 407 ~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred hHHHHHHHHHHHHHHhhCc
Confidence 8999999999877665553
No 72
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=92.13 E-value=0.62 Score=48.51 Aligned_cols=75 Identities=20% Similarity=0.382 Sum_probs=60.7
Q ss_pred CCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHH-----Hh-ccCchhHHHHHHHHHH
Q 000200 890 PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILK-----CL-GDNKKHMRECTLTVLD 961 (1871)
Q Consensus 890 p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~-----~l-~D~K~~vR~aa~~ald 961 (1871)
+....+.+.+|++||.+.|-+++..||.++..+..-.|+.|..+.. .++-.++. .. .|.-..||+.+.+.+.
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4456899999999999999999999999999999999999988743 33333332 12 2456799999999999
Q ss_pred HHH
Q 000200 962 AWL 964 (1871)
Q Consensus 962 a~~ 964 (1871)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=32 Score=46.13 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccc-ccchhhhHHHHHHHhccC
Q 000200 301 ERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEK 378 (1871)
Q Consensus 301 eRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F-~~y~~~~~~~lLeklKEK 378 (1871)
.|+.+-.-+.++-. ++.+... ..++..|+..+.|+|..||+.|+..+..|.+-=+..+ ..-...++..+|+++.|=
T Consensus 137 vRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec 214 (734)
T KOG1061|consen 137 VRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC 214 (734)
T ss_pred HHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh
Confidence 35555444444432 3444322 3578999999999999999999999999998866422 233566777777777775
Q ss_pred CHHHHHHHHHHHHHHHHhc---CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC
Q 000200 379 KPTVAESLTQTLQAMHKAG---CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 455 (1871)
Q Consensus 379 K~~V~eAl~~aLda~~~~~---~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~ 455 (1871)
--.-+- .-||....|. ...+.++.+-+...++|-|+.|-..+.+++-..+...+. ....+.+.+.|.++.+++
T Consensus 215 ~EW~qi---~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls 290 (734)
T KOG1061|consen 215 TEWGQI---FILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLS 290 (734)
T ss_pred hhhhHH---HHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeec
Confidence 554443 3445555541 123557888999999999999999999999888876654 112334666777777664
Q ss_pred CC
Q 000200 456 DG 457 (1871)
Q Consensus 456 Ds 457 (1871)
-.
T Consensus 291 ~~ 292 (734)
T KOG1061|consen 291 SE 292 (734)
T ss_pred cc
Confidence 33
No 74
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=0.43 Score=60.83 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=81.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhh
Q 000200 860 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 937 (1871)
Q Consensus 860 ~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l 937 (1871)
..+.++||-.=.|==|.| + ....+| -|.+++||+|+...|-.++..||.+|..+.+=+|..|-.+ .+-|
T Consensus 12 ~~l~~pDWa~NleIcD~I----N--~~~~~~---~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLI----N--STEGGP---KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHHHHHHH----h--cCccCc---HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456788997655433333 2 122222 5999999999999999999999999999999999999865 5679
Q ss_pred hHHHHHHhccC--chhHHHHHHHHHHHHHHhccc
Q 000200 938 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL 969 (1871)
Q Consensus 938 ~~~il~~l~D~--K~~vR~aa~~alda~~~~~gl 969 (1871)
+..++.+++.+ -..||+-++..|++|.++.+-
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 99999999887 458999999999999988763
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=5.2 Score=52.73 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=79.4
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcC
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 927 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG 927 (1871)
.+|..-+.-+++.-+++++.-+|+-+|+=.-.|++.-| ++|++..||+++.++|-+=...+-+.=+.+-..|.
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 34445556677888999999999999999999997543 69999999999987775422222211122222221
Q ss_pred ---hhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 928 ---PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 928 ---~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
-.|--++-.++|-+++-++|.....-.+. +..+-+++. + .|.+|..+++-|.+.|+..
T Consensus 385 ~cav~Fp~~aatvV~~ll~fisD~N~~aas~v----------------l~FvrE~ie--k-~p~Lr~~ii~~l~~~~~~i 445 (948)
T KOG1058|consen 385 ACAVKFPEVAATVVSLLLDFISDSNEAAASDV----------------LMFVREAIE--K-FPNLRASIIEKLLETFPQI 445 (948)
T ss_pred HHhhcChHHHHHHHHHHHHHhccCCHHHHHHH----------------HHHHHHHHH--h-CchHHHHHHHHHHHhhhhh
Confidence 23444555666666666666654422221 122223332 1 3556666666666666655
Q ss_pred CC
Q 000200 1005 SG 1006 (1871)
Q Consensus 1005 ~~ 1006 (1871)
++
T Consensus 446 rS 447 (948)
T KOG1058|consen 446 RS 447 (948)
T ss_pred cc
Confidence 54
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=91.34 E-value=1.7 Score=55.27 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=87.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~ 405 (1871)
.+..|...+.|++-.|-..+++.++.+ .-....+.++.-+++..+.|+.++..++-..- .+..
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 488888888888888777666666532 23455677888889999999987775555321 2346
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
+-+..+|++..|.||.+.+.-|...=. ...+|.+...+.|.+++||.+|..+++-+
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 778888999999999988877653211 23456677889999999999999988544
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=91.28 E-value=4.1 Score=51.90 Aligned_cols=146 Identities=15% Similarity=0.021 Sum_probs=93.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhh
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 936 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~ 936 (1871)
.++.-+++.+.++|..+++.+.. ++. +-...|+.-|+|.+..|-..|+.++|.+... .
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~------r~~------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~ 178 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGA------HRH------DPGPALEAALTHEDALVRAAALRALGELPRR----------L 178 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHh------hcc------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------c
Confidence 46777888999999999976653 222 2234667777899999999999999887644 3
Q ss_pred hhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH
Q 000200 937 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1871)
Q Consensus 937 l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1871)
.+|.+...+.|..+.||.+|+.++-.. |-..-++.+..+...+ ++..+..+..+++.. . ....+..
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~----~----~~~a~~~ 244 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA----G----GPDAQAW 244 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC----C----chhHHHH
Confidence 355567779999999999999998333 3333334344433322 233445555554322 1 1134445
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1017 ASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
+...+.|.. ||..+-.+|+.+-
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~lg 266 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLVG 266 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHcC
Confidence 555666644 8887777776543
No 78
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.14 E-value=0.26 Score=39.23 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhc
Q 000200 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~ 1043 (1871)
+..+..+++|.+++||.+|..+|+.+++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 345778999999999999999999998763
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=12 Score=50.09 Aligned_cols=292 Identities=18% Similarity=0.225 Sum_probs=179.4
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-h
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-V 404 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-~ 404 (1871)
|...|++=|..+|..||.+|+..++.|+.. --++-+.|.+-+.++-.|+.||.-+.-|+--+... .-++.+ +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i~s~------EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK-~P~l~e~f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNICSP------EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK-VPDLVEHF 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CchHHHHh
Confidence 567788888899999999999999998754 34788999999999999999999777777666654 223333 4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh-----------------CCCCHHHHHHHHH
Q 000200 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------------NDGTPEVRDAAFS 467 (1871)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l-----------------~Ds~~~VR~aA~~ 467 (1871)
+......|..|++.|-..++.++.+..+..+. .+. ..+.+++.+++.| .|+.--||
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~----- 253 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR----- 253 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH-----
Confidence 45667788999999999999999998876542 222 2244666555544 34433333
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000200 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1871)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 547 (1871)
+-.+++++|.. |+........++.... +.+ . +
T Consensus 254 -iLrlLriLGq~---------d~daSd~M~DiLaqva----tnt---------------d---------------s---- 285 (866)
T KOG1062|consen 254 -ILRLLRILGQN---------DADASDLMNDILAQVA----TNT---------------D---------------S---- 285 (866)
T ss_pred -HHHHHHHhcCC---------CccHHHHHHHHHHHHH----hcc---------------c---------------c----
Confidence 23344555532 3323333333332110 000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000200 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1871)
Q Consensus 548 ~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~ 627 (1871)
++.. -..+-.|-+. -+.++- .+=+-|.-|+.-+-+
T Consensus 286 ---------------------------skN~-------GnAILYE~V~-TI~~I~----------~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 286 ---------------------------SKNA-------GNAILYECVR-TIMDIR----------SNSGLRVLAINILGK 320 (866)
T ss_pred ---------------------------cccc-------hhHHHHHHHH-HHHhcc----------CCchHHHHHHHHHHH
Confidence 0000 0001111111 111111 122346666666665
Q ss_pred HHHhhhcc--chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHH
Q 000200 628 QVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKC 705 (1871)
Q Consensus 628 ~v~~~~~~--~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~ 705 (1871)
++...+.. ......|.|.+..+|. ++++ -+.++-.|+ |=.|+-.|..|.|+
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~------------------avqr----Hr~tIleCL-----~DpD~SIkrralEL 373 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPT------------------AVQR----HRSTILECL-----KDPDVSIKRRALEL 373 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcH------------------HHHH----HHHHHHHHh-----cCCcHHHHHHHHHH
Confidence 55443222 1123334444433321 2221 122333343 33567789999999
Q ss_pred HHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000200 706 LTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1871)
Q Consensus 706 L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~ 752 (1871)
+..+...-...+++.+++.++-+. .+....++...|+.+.+.|-..
T Consensus 374 s~~lvn~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 374 SYALVNESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHhccccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999998666 9999999999999999999974
No 80
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.85 E-value=1.9 Score=48.76 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhc-cccccchhhhHHHH------------HHHhccCCHHHHHHHHHHHHHHHHhcC---------
Q 000200 341 VAVEAIQAIGNLARGLR-THFSGSSRFLLPVL------------LEKLKEKKPTVAESLTQTLQAMHKAGC--------- 398 (1871)
Q Consensus 341 vv~~A~~~i~~lA~gLr-~~F~~y~~~~~~~l------------LeklKEKK~~V~eAl~~aLda~~~~~~--------- 398 (1871)
|-+.|+.|++.|++... +.|..|-..++|.- -=-++|--+.||.++..+|.++... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHHHHHHHHh
Confidence 44679999999999964 66889988888876 2235788899999999999988753 2
Q ss_pred --------CChh--------hhHHHHHHHhhc-CCchhHHHHHHHHHHHHhhCChhHHH-HhhhhhHHHHHhhhCCCCHH
Q 000200 399 --------LNLV--------DVVEDVKTSVKN-KVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 460 (1871)
Q Consensus 399 --------~~l~--------~~~e~i~~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~-~~~k~~~~~l~k~l~Ds~~~ 460 (1871)
++|. ++...+..++++ +++.+-.+.++-|+-.++++|-.-+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1222 333455667764 46888889999999888887755443 56677888888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000200 461 VRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 461 VR~aA~~~l~~lmk~~ 476 (1871)
||-++..|+|.+.-..
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999987543
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.73 E-value=0.8 Score=51.59 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=97.6
Q ss_pred cccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHH---H
Q 000200 848 EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---A 923 (1871)
Q Consensus 848 vDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~l---A 923 (1871)
.|...-| +.|.+.+-.++-=-|-=|.+.+.++|.. +..+|-|-. -.|+..||.-|.-.|..+...+|+++++| .
T Consensus 34 Ldy~~~L-pif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 34 LDYHHYL-PIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred cchhhHH-HHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3433333 4577777777766677788888888887 778899987 89999999999999999999999999999 8
Q ss_pred HhcChhHHhhhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhccchhhh
Q 000200 924 SAMGPAVEKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVHLDKMV 973 (1871)
Q Consensus 924 ~amG~~~~k~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1871)
..+|+..-+|-|.++|.+- .|.+ ++.++++-..++|.......|=+.+.
T Consensus 112 ~~vG~aLvPyyrqLLp~ln-~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLN-LFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 8889999999999988664 3333 45788888888888887777765543
No 82
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.58 E-value=3.3 Score=53.35 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=134.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pK---i~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.-..++.|.+=+.+.++.+.+-++++..+ |...--..++..|-..+. |.|-.+...|+-+++.||.|--..-.-+
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 45667788888889999999999876444 432212246666777776 8899999999999999999987665544
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh------HHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCC
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP--LVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~------~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~ 435 (1871)
-...+|.++.-+-.....|+|.+.=||-.++.. +..+-|+ ++.++..+.+..+ .+| .+.|.-.-|....
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrgk 226 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRGK 226 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcCC
Confidence 345678889999999999999998888888765 4344433 3566666666665 444 3445555554332
Q ss_pred -hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 436 -KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 436 -~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+++-...++.++|++..++.+.|++|..-|+-++..|...--
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 332234558899999999999999999999988887764433
No 83
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.28 E-value=47 Score=44.21 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=162.0
Q ss_pred HHHHHHhhcchhhHHHHHHHHhh-----ccCchhHHHHHHHHHHHHHhhCCCc--cC-hhHHHhhchhhhcccChhHHHH
Q 000200 116 VFMLWVELEAVDVFLDVMEKAIK-----NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRAS 187 (1871)
Q Consensus 116 ~~l~~vE~e~~~~v~e~ll~~~~-----~K~PKvvaaai~~l~~~l~~FG~~v--v~-~K~ilk~l~~lf~~~dk~VR~e 187 (1871)
.+-.|+|....+++-+.++..++ .|+|=++---+..+...+..|--.- .+ +.+++.++-...++.|++||-.
T Consensus 25 l~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfr 104 (892)
T KOG2025|consen 25 LLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFR 104 (892)
T ss_pred HHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHH
Confidence 34445555555555555554444 6888888888888888888876421 12 5678888888888999999987
Q ss_pred HHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCC
Q 000200 188 SKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 267 (1871)
Q Consensus 188 a~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1871)
...++--+---.|. +-+.+|++|+..++
T Consensus 105 vlqila~l~d~~~e--idd~vfn~l~e~l~-------------------------------------------------- 132 (892)
T KOG2025|consen 105 VLQILALLSDENAE--IDDDVFNKLNEKLL-------------------------------------------------- 132 (892)
T ss_pred HHHHHHHHhccccc--cCHHHHHHHHHHHH--------------------------------------------------
Confidence 77666555443331 23344455444443
Q ss_pred CCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHH
Q 000200 268 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAI 346 (1871)
Q Consensus 268 ~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~ 346 (1871)
.++.+.-=-.|.+|+-.|-.+-..|+ ++--+++++|+.+|. |+|--|-..|+
T Consensus 133 ------------------------~Rl~Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaL 185 (892)
T KOG2025|consen 133 ------------------------IRLKDREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAAL 185 (892)
T ss_pred ------------------------HHHhccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHH
Confidence 33333333345555555544433222 233467888999998 99999999988
Q ss_pred HHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHH
Q 000200 347 QAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 426 (1871)
Q Consensus 347 ~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~ 426 (1871)
-||.-= ...+|-++||-+|-+..+|.-+ |
T Consensus 186 snI~vd------------nsTlp~IveRarDV~~anRrlv---------Y------------------------------ 214 (892)
T KOG2025|consen 186 SNISVD------------NSTLPCIVERARDVSGANRRLV---------Y------------------------------ 214 (892)
T ss_pred HhhccC------------cccchhHHHHhhhhhHHHHHHH---------H------------------------------
Confidence 887532 3456779999999887766421 1
Q ss_pred HHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCC-----HHHHHHHHHHHh
Q 000200 427 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLD-----DVRRNKLSEMIA 501 (1871)
Q Consensus 427 L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld-----~~kk~KI~e~~~ 501 (1871)
.||++....-.+ . ++..+-.+-.+|||+.-+||.|+..++..=.--+.+..+-..|+.|| +...+.|+.+++
T Consensus 215 -~r~lpkid~r~l-s-i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 215 -ERCLPKIDLRSL-S-IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred -HHhhhhhhhhhh-h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 122221100000 0 12234456689999999999999999988655566666778888886 667777888887
Q ss_pred c
Q 000200 502 G 502 (1871)
Q Consensus 502 ~ 502 (1871)
+
T Consensus 292 ~ 292 (892)
T KOG2025|consen 292 G 292 (892)
T ss_pred H
Confidence 5
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.03 E-value=15 Score=51.08 Aligned_cols=278 Identities=17% Similarity=0.258 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh----hccchhhc
Q 000200 617 ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL----CLLGISER 692 (1871)
Q Consensus 617 ~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~----~l~~lveK 692 (1871)
.|++|+|-|... ...-..+.-.|-++=|+.+. |.|+-.+|+...++.|+.+...-..+....+.. ++|.|-.=
T Consensus 439 tK~~ALeLl~~l-S~~i~de~~LDRVlPY~v~l--~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 439 TKLAALELLQEL-STYIDDEVKLDRVLPYFVHL--LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hHHHHHHHHHHH-hhhcchHHHHhhhHHHHHHH--hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 467888876633 22111222355566666543 899999999999999999887667777666655 44554444
Q ss_pred cccc---hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCcc-------------c-
Q 000200 693 VADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-------------K- 755 (1871)
Q Consensus 693 lgD~---K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~-------------~- 755 (1871)
+-|. -+|-.-..+|-.+|+.. +.++ .+++.++.-|+-.- .
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA---------~rFl--------------e~~q~~~~~g~~n~~nset~~~~~~~~~~ 572 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTA---------YRFL--------------ELTQELRQAGMLNDPNSETAPEQNYNTEL 572 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHH---------HHHH--------------HHHHHHHhcccccCcccccccccccchHH
Confidence 4442 24444445555555421 1111 11122222222100 0
Q ss_pred ---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 000200 756 ---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASE 832 (1871)
Q Consensus 756 ---~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~ 832 (1871)
.+.+-+.+-.. |..+.|.||.+=++-++.+|.|.| |...
T Consensus 573 ~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFG-----------------------k~ks-------------- 614 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFG-----------------------KEKS-------------- 614 (1431)
T ss_pred HHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhh-----------------------hccc--------------
Confidence 11222233444 556667777777766666665443 2100
Q ss_pred ccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccc-hHHHHhhhccchhHhH
Q 000200 833 STSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNL 911 (1871)
Q Consensus 833 ~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ge-L~~aLk~rl~DsNk~l 911 (1871)
+|. |=+-+++=++|++|.-|-.-.|.+-.+. -++.+--..| |++-|.+-|.|.--.|
T Consensus 615 ---------ND~---------iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~V 672 (1431)
T KOG1240|consen 615 ---------NDV---------ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAV 672 (1431)
T ss_pred ---------ccc---------hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhh
Confidence 121 4456778899999999999999987654 2455442233 5666788889999999
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----hhhHHHHHHHh
Q 000200 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALT 981 (1871)
Q Consensus 912 v~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~----~~~~~i~~~L~ 981 (1871)
+..||.++..+-+- |-==++|+.-++..++--|-.-..+||.++..-+-++..+.+-. .++|.|-.+|+
T Consensus 673 iv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 673 IVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999888777653 22224567777777777888888889998888888887776632 23555555555
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=6 Score=52.01 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=130.2
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l-~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
.|.+.-|.++|==.||-|+--|+++ ++-|- -..+-+.-|+..|.|.-..|+..|.+.|..||+.=.++|=+.+..
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHH
Confidence 3678889999999999999999885 44332 123346678888999999999999999999999988887766665
Q ss_pred hHHHH--------------------------HHHhccCCHHHHHH------HHHHHHHHHHhc--------CCChhhhHH
Q 000200 367 LLPVL--------------------------LEKLKEKKPTVAES------LTQTLQAMHKAG--------CLNLVDVVE 406 (1871)
Q Consensus 367 ~~~~l--------------------------LeklKEKK~~V~eA------l~~aLda~~~~~--------~~~l~~~~e 406 (1871)
++--| -.|+=|.=.+..+. +-+|++++.... .-+..-|++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 54332 22333333333332 235666665420 011335667
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHH
Q 000200 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE 482 (1871)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~ 482 (1871)
-+-.++..--|++|.-.+.-+...+.++++++. ..-..+++||+|.|+.||=.|... ++-+|.++.+.
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdL---l~gmVskkNl~ 370 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDL---LYGMVSKKNLM 370 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHH---HHHHhhhhhHH
Confidence 777888899999999999999999999887654 234568899999999999776555 55666665543
No 86
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=89.24 E-value=1.8 Score=59.55 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHhc-cccHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh
Q 000200 300 SERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLIT-DVNIA-VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL 375 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~p--Ki~~~dy~eL~~~Lkk~l~-DsNv~-vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl 375 (1871)
-+|+-|.-.|.-+.+.- -+. .-|-.|...|-+-+. +.+.+ --...++....++.-|+..|.+ ....+|.++...
T Consensus 748 ~errgael~L~~l~~~fg~sl~-~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLA-AKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHH-HhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 46777766666554311 110 012223344444443 33333 5666778888888888888888 888899999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCCC-hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCLN-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~~-l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1871)
+--=..||-++..|+..+++..|.. +.-+++.+..-++.----+|.+...-+..++...--..+..+.--+++++..++
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 9999999999999999999874322 334456666666655556666666666666654322222233344789999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhChhH-------HHHHhhcCCHHHHHHHHHHHhcC
Q 000200 455 NDGTPEVRDAAFSVLAAIAKSVGMRP-------LERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 455 ~Ds~~~VR~aA~~~l~~lmk~~Ge~~-------l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
.|.+..||++|.++++.++.+++... |-..|-...+.-++-|+.+++.+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldps 961 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPS 961 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcc
Confidence 99999999999999999999998543 45555555566677778777754
No 87
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=88.99 E-value=5.6 Score=54.85 Aligned_cols=187 Identities=20% Similarity=0.233 Sum_probs=131.2
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCC---Cccc-hHHHHhhhccc-hhHhHHHHHHHHHHHHHHh
Q 000200 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA---GTGE-LFGGLRGRLYD-SNKNLVMATLITLGAVASA 925 (1871)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~---~~ge-L~~aLk~rl~D-sNk~lv~~al~ii~~lA~a 925 (1871)
.+.|.|=++.=+.|+.=++|-+||+.|-++|.- .+.|.|. .|-| |++.|+.-+.| ++..|-..-+++|+.+|.-
T Consensus 460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 460 LDRVLPYFVHLLMDSEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 445677788889999999999999999999963 3555554 3444 77888888899 5555556667888888832
Q ss_pred c------------------------Ch-hHHhh----hhhhhHHHHHHhccCchhHHHHHHHHHHHH---HHhcc-chhh
Q 000200 926 M------------------------GP-AVEKS----SKGVLSDILKCLGDNKKHMRECTLTVLDAW---LAAVH-LDKM 972 (1871)
Q Consensus 926 m------------------------G~-~~~k~----~k~l~~~il~~l~D~K~~vR~aa~~alda~---~~~~g-l~~~ 972 (1871)
. +. .+..+ ..++-.-+.+-|.|+++.||.|.++.+--. +...+ -|-+
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccch
Confidence 1 10 12222 334555668889999999999999986533 33333 4667
Q ss_pred hHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH-HhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 973 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 973 ~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p-~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
++.+.++|.+. -+.+|...++=|. .+.-+--.......+.| +...|.|.-+-|=-.|-.+|..+++
T Consensus 619 LshLiTfLNDk--Dw~LR~aFfdsI~-gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 619 LSHLITFLNDK--DWRLRGAFFDSIV-GVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHhcCc--cHHHHHHHHhhcc-ceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 88999999754 4678877665443 11111112346778888 5569999999999999888888876
No 88
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=88.85 E-value=2.3 Score=44.30 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=67.1
Q ss_pred hccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchh--hhHHHHH
Q 000200 295 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLL 372 (1871)
Q Consensus 295 ~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~--~~~~~lL 372 (1871)
..++|+ .+.++-.++.. .+..+.+++++|+++|.+.|..++..|+.++..+.+-=+..|..++. .++..++
T Consensus 14 ~~p~~~----~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~ 86 (115)
T cd00197 14 MGPDWP----LIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELL 86 (115)
T ss_pred CCCCHH----HHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHH
Confidence 345564 44444444432 24568899999999999999999999999999999999999998843 2333332
Q ss_pred HHh-------ccCCHHHHHHHHHHHHHHH
Q 000200 373 EKL-------KEKKPTVAESLTQTLQAMH 394 (1871)
Q Consensus 373 ekl-------KEKK~~V~eAl~~aLda~~ 394 (1871)
+| ++.-.+|++.+.+.+..|+
T Consensus 87 -~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 87 -KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred -HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 22 2346789999999888885
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.52 E-value=0.46 Score=42.57 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHH
Q 000200 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 962 (1871)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda 962 (1871)
+...|+..||.++...+..++.|...++|.++..|.|....||.+|..||..
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567888999988888999999999999999999999999999999988753
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.74 E-value=87 Score=40.17 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=127.3
Q ss_pred HHHhh-cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhh
Q 000200 857 TLVKS-LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSS 934 (1871)
Q Consensus 857 ~l~~~-l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~ 934 (1871)
.+++- ....++-.|.-+++-+-.++ ||........+++..+...+ ...+......++.++.-+++|+=-.-.+.+
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 34433 45556999999999998887 57555554567777777777 677777788899999999988843334667
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc--------c--c-----hhhhHHHHHHHhcc--cCCcchHHHHHHHH
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--------H--L-----DKMVPYVTTALTDA--KLGAEGRKDLFDWL 997 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~--------g--l-----~~~~~~i~~~L~~~--~~~p~~r~e~l~wL 997 (1871)
..++..+++.|+| +.+...+..++.-.+... + . ..++..+...|.+. ..+...|..-|.=|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 7788889999999 666777777777666541 1 1 11233333333211 01122344444444
Q ss_pred HHHhccCCC---CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhcc
Q 000200 998 SKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1055 (1871)
Q Consensus 998 ~~~l~~~~~---~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~L 1055 (1871)
.--+...+. .+++..+++-++.+|.=.+.+||.++=+.|..++..- .+.+..+++.|
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 444444443 2455555666888998888899999999999888876 77777776654
No 91
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.66 E-value=70 Score=40.46 Aligned_cols=314 Identities=16% Similarity=0.208 Sum_probs=184.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh----cCCCccc-hHHHHHHHHHHHHHHHHh---c
Q 000200 609 QLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSEK-NVQVQQQVIEVINYLAAT---A 674 (1871)
Q Consensus 609 ~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~----~Pgwkes-NfqV~~~~leil~~la~~---~ 674 (1871)
||.+++=-.|++||..|...+...+.. ....+++++++.. +++=++. +.++....+..+..+... .
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 566777778999999999888774322 2224555555543 2333443 777888888888887743 2
Q ss_pred CCCCccchhhhccchhhccccch-hhhHHHHHHHHHHH-hhchHhH----HHHHHHhhhh----cCChhhHHHHHHHHHH
Q 000200 675 TKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSE-AVGPGFI----FERLYKIMKD----HKNPKVLSEGILWMVS 744 (1871)
Q Consensus 675 ~~fs~~~~~~~l~~lveKlgD~K-~r~~a~e~L~~~aE-~~~~~~V----~~~l~~~~~~----~KnPKv~~e~l~wl~~ 744 (1871)
+.++...+..++..+++.+.++. .|..+...|..+++ .+++.++ .++++..+.. -+.-=+..|.|.-+..
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 45666666678888888888875 56777777777776 5666653 3334433322 3345567888888888
Q ss_pred HHHHhccCcc-chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 745 AVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 745 ai~eFG~~~~-~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
.+..|--.-+ ....=++.+-.. +=|+...||+.|+.++-.+-+.+|+.- .+...+.+.|+..-.++
T Consensus 161 ll~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~~~--- 227 (372)
T PF12231_consen 161 LLSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLENG--- 227 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccccc---
Confidence 8877753211 112222233333 668899999999999999988888421 11112222222111000
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCC-CChHHHHHHHHHHHHHHHHcccCCCCC-CccchHHHHh
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLR 901 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d-~~WK~RkEaLe~v~~il~~ankrI~p~-~~geL~~aLk 901 (1871)
+. -.-+.+.+.+-+.+ .+.+.=-..=-.+-.++. ++++.-. .+++.+....
T Consensus 228 --~~-----------------------~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 228 --KL-----------------------IQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG--SSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred --cH-----------------------HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC--CchhhccHhHhHHHHHHH
Confidence 00 00011111122222 111111111112333332 2333332 2477888888
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhH---HhhhhhhhHHHHHHhccCch-----hHHHHHHHHHHH
Q 000200 902 GRLYDSNKNLVMATLITLGAVASAMGPAV---EKSSKGVLSDILKCLGDNKK-----HMRECTLTVLDA 962 (1871)
Q Consensus 902 ~rl~DsNk~lv~~al~ii~~lA~amG~~~---~k~~k~l~~~il~~l~D~K~-----~vR~aa~~alda 962 (1871)
..++.+|..+...|+.+=..+.-++.+.- .+..+.+..|+...+.-.+. .+|.+++.++..
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 89999999999999988888887776543 46688888999887765443 456666665543
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=19 Score=47.33 Aligned_cols=268 Identities=16% Similarity=0.173 Sum_probs=153.3
Q ss_pred hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh-CchhH
Q 000200 717 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDIK 795 (1871)
Q Consensus 717 ~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~-G~~l~ 795 (1871)
+++..+.-. .....+.|+..++.-|-++=+ |++ -.|.+..-++++ +...+-.||.+|++|+-..-.-. |+--+
T Consensus 198 ~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k--L~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK--LSKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc--ccHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344443333 567788888877777665544 654 236677778888 99999999999998774432221 22100
Q ss_pred ----------------------------------hhhhcch-HHHHHHHHHHHhcCCCCCCCCCcccccccccc------
Q 000200 796 ----------------------------------GFLADVK-PALLSALDAEYEKNPFEGTVVPKKTVRASEST------ 834 (1871)
Q Consensus 796 ----------------------------------~~l~dlk-pall~~ie~EF~K~~~~~~p~p~R~~r~~~~~------ 834 (1871)
.-|+.+. .-+.++|+++....-.....+-+|+.+--+++
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 0111111 12344444443321110011111110000000
Q ss_pred ---CCCCCCCCCCCCccccccC-CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHh
Q 000200 835 ---SSVSSGGSDGLPREDISGK-FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKN 910 (1871)
Q Consensus 835 ---~~~~~~~~d~lprvDIs~k-it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~ 910 (1871)
.++++.. |.-..+.|-.. --..|+..++|.=.-+|..|++.+..+-.. + |+--..-+.-|-..|+|----
T Consensus 352 ~~~advpsee-~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s---s--P~FA~~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEE-DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS---S--PGFAVRALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhh-ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC---C--CCcHHHHHHHHHHHhccHHHH
Confidence 0000000 00111111110 114678888999999999999999888752 2 222234556677788888888
Q ss_pred HHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHH--HHhccchhhhHHHHHHHhcccCCcc
Q 000200 911 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW--LAAVHLDKMVPYVTTALTDAKLGAE 988 (1871)
Q Consensus 911 lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~--~~~~gl~~~~~~i~~~L~~~~~~p~ 988 (1871)
|--.|+..+..|+.-+ +-..-.++.|+++|-|.-..||+++.+-|-.. .+..+++.++..+...|+ + =|+
T Consensus 426 VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~--k-yPq 497 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLG--K-YPQ 497 (823)
T ss_pred HHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh--h-CCC
Confidence 8888888888888762 23345688999999999999999999877643 233345555555555555 2 366
Q ss_pred hHHHHHHHHHHHhccC
Q 000200 989 GRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 989 ~r~e~l~wL~~~l~~~ 1004 (1871)
-|-|+|+-+.+-=.++
T Consensus 498 Drd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 498 DRDEILRCMGRIGQNH 513 (823)
T ss_pred CcHHHHHHHHHHhccC
Confidence 7888888776543333
No 93
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.85 E-value=3.4 Score=45.07 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKE-KKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKE-KK~~V~eAl~~aLda~~~~ 396 (1871)
=.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|..-+.+ .-+.|++-+...+..|...
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999866 45666666666666 5778888888888888764
No 94
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=36 Score=45.70 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh------
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA------ 396 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~------ 396 (1871)
..++...|+..-.|-.+..|..|++|||.+|-...+. ..|+..+|+-+.=|..-|++.+.-.+.-++.+
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~ 422 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE 422 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh
Confidence 4557888888888999999999999999999988765 45777777777766665555544444444333
Q ss_pred -----cCCC--------------------------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000200 397 -----GCLN--------------------------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1871)
Q Consensus 397 -----~~~~--------------------------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1871)
.|.+ ..++++++.+.++...++|+.+.+.=..|+|-..++.+- +.
T Consensus 423 ~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq----~~ 498 (734)
T KOG1061|consen 423 SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQ----EL 498 (734)
T ss_pred hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHH----HH
Confidence 1111 224567778888888899999998888888866554322 23
Q ss_pred hHHHHHhhhCCCC-HHHHHHHH
Q 000200 446 YVPICMECLNDGT-PEVRDAAF 466 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~-~~VR~aA~ 466 (1871)
+...|--+.+|++ +++||.+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHhhhhccccChhhhhhHH
Confidence 3445556666664 59999987
No 95
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.33 E-value=40 Score=40.59 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=104.0
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 608 GQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 608 ~~L~s~~WK~RL~a~e~l~~~v~~~~~---~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
.-|.+.++..|-.|++-|...++..+. .....++|+.++..+ +.| ..++...+..+..++ +...|+...+..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~r--l~D--~~~~~~~l~gl~~L~-~~~~~~~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSR--LDD--HACVQPALKGLLALV-KMKNFSPESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHH--hcc--HhhHHHHHHHHHHHH-hCcCCChhhHHH
Confidence 467889999999999999988888543 234568888888753 433 234444477778777 468899999888
Q ss_pred hccchhhccccc----hhhhHHHHHHHHHHHhh-------chHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhcc
Q 000200 685 CLLGISERVADI----KTRAHAMKCLTTFSEAV-------GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 751 (1871)
Q Consensus 685 ~l~~lveKlgD~----K~r~~a~e~L~~~aE~~-------~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~ 751 (1871)
++..+.+++... +.|-.+-++|..+.+.. +.+||. .++..+-.-|.|+..--++..+..++.+|-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~-~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVY-GFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHH-HHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 999988877664 46888888888887764 556665 4445557799999999999999888887664
No 96
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=68 Score=41.94 Aligned_cols=362 Identities=17% Similarity=0.161 Sum_probs=206.9
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHH-HcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 855 TPTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 855 t~~l~~~l~d~~WK~RkEaLe~v~~il~-~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
....+..+.+.+=..+.++..+.-+++. +-|+.|..-.-..+++-|-.-| .+.|-.+.--|+-+++.||.+---.-.-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3456677777787889999999999996 3345544433223444444445 5778888999999999998765433333
Q ss_pred hhh-hhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-cc-hhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 933 SSK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HL-DKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 933 ~~k-~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl-~~~~~-----~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
++. ..+|-++..|......||+-|.-||--++... .+ +-++. .+...+.....-..+| -+.|.-..|...
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcC
Confidence 332 46788999999999999999998887665432 22 22222 2222222221001222 367888888877
Q ss_pred CC-Ccc---hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccCCCCCCCCC
Q 000200 1005 SG-FPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1080 (1871)
Q Consensus 1005 ~~-~~~---~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~~~~~~~~~ 1080 (1871)
+. .|. ...++..+..+|.+.+++|..-|.-+|.++--+- .|...-- ++-.....+++.|....++...|+-
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~v---i~~gvv~~LV~lL~~~~~~v~~PaL- 300 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMV---IDAGVVPRLVDLLGHSSPKVVTPAL- 300 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHH---HHccchHHHHHHHcCCCcccccHHH-
Confidence 64 332 3445555777999999999998888887765422 1211111 1123344555555554321100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhc---------ccCC-CChHHHHhhhhccc
Q 000200 1081 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRF 1150 (1871)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~K~~R~~~~~~kw 1150 (1871)
..-++ ++ .| .+.+++.++ .... +.|+ -+|+-. =|
T Consensus 301 ---------------RaiGN-------Iv-tG-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~-~ikkEA-cW 344 (514)
T KOG0166|consen 301 ---------------RAIGN-------IV-TG-----------SDEQTQVVINSGALPVLSNLLSSSPKE-SIKKEA-CW 344 (514)
T ss_pred ---------------hhccc-------ee-ec-----------cHHHHHHHHhcChHHHHHHHhccCcch-hHHHHH-HH
Confidence 00000 00 00 012222111 0011 1111 011111 15
Q ss_pred cc---cCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHh--HHHHHHHHHHhccccch
Q 000200 1151 KF---EDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNT 1225 (1871)
Q Consensus 1151 ~f---~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~--lDlllkw~tlr~~dtN~ 1225 (1871)
.. +.-..+|++.. |...+=+.|+..|-+.||+-+-+|.=.+.-...+-..+.|.- -.-+++-++-.+.-.++
T Consensus 345 ~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 43 44455666666 888999999999999999988888877776655444443320 11144555445555788
Q ss_pred HHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC
Q 000200 1226 TCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1267 (1871)
Q Consensus 1226 ~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd 1267 (1871)
.++..+||-+..+|.+-.... .+.. .-+..+|+..|-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 889999999998777643332 1111 455677777764
No 97
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.70 E-value=5.8 Score=43.10 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=75.1
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+. +. +..-.+-+++|+++|...|.+|+..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~ileicD~In---~~----~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 14 NREEDWEAIQAFCEQIN---KE----PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCCHHHHHHHHHHHH---cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 45677765444444432 11 22245899999999999999999999999999999999999876 46788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
+..+..| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888653 478999999999999865
No 98
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.67 E-value=4.3 Score=43.95 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHH
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHK 395 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~~----V~eAl~~aLda~~~ 395 (1871)
.-.+.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|..-++.++.. |++-+.+.+..|..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999766 455777777767766665 79999999999987
Q ss_pred h
Q 000200 396 A 396 (1871)
Q Consensus 396 ~ 396 (1871)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 6
No 99
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.64 E-value=1.7e+02 Score=42.57 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhccccchH------HHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHHHHHHHHH
Q 000200 1208 VLDILLRWFVLQFCKSNTT------CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVREKMRELT 1280 (1871)
Q Consensus 1208 ~lDlllkw~tlr~~dtN~~------vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR~~vr~i~ 1280 (1871)
.++|+...+....-+-++- --.+.+.|+..||-.-.-.-.-|+---+..+.|||..|+-. ....|-..|-.|+
T Consensus 1025 ~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1025 VLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 4666666665554443322 23467888888887777777777767888999999999422 3334445555666
Q ss_pred HH-HhhccCccchHHH-----HHhhhccCChhhHhHHHHHHHHHHHh--hcCcc---cCc--cchHHHHHHHhc
Q 000200 1281 KQ-IVNFYSATKTLPY-----ILEGLRSKNNRTRIECVDLVGFLIDH--HGAEI---SGQ--LKSLQIVASLTA 1341 (1871)
Q Consensus 1281 ~~-~~~vyp~skvf~~-----l~~glksKN~r~R~Ecl~el~~li~~--~G~~v---~~~--~Kal~~ia~~i~ 1341 (1871)
+. ++++--+|--|-+ ||.-+-.-|-++=.||..-||.+..+ +|+.+ |.. .|.|+.+.+...
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~ 1178 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNN 1178 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 43 3344334444443 23344556778899999999999996 88776 333 466677666543
No 100
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.38 E-value=2.8 Score=53.78 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=77.6
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
.+...+|--=.|.=|.+..--..+| |.+++|||+|+..|-.|+.+|+..|+.+.+--|..|... .+-|+..
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566777655554444433222333 999999999998888999999999999999999999866 6789999
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHHh
Q 000200 371 LLEKLKEK--KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 lLeklKEK--K~~V~eAl~~aLda~~~~ 396 (1871)
|+.++|.+ =..|++-+...|++|...
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 99999988 456899999999999875
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=85.38 E-value=21 Score=43.95 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=121.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
.....+.+.+|-.|..+...+..+ +--+.+..|.+.+.|.+..|...|+.+++.+ .. ...+
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~~---------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~~---~~a~ 107 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGEL---------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-------GD---PEAV 107 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhh---------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------CC---hhHH
Confidence 455667888999999988774332 2346789999999999999999998855543 22 3456
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchh------------HHHHHHHHHHHHhhCC
Q 000200 369 PVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLV------------RSLTLNWVTFCIETSS 435 (1871)
Q Consensus 369 ~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~v------------k~etl~~L~r~l~~~~ 435 (1871)
+++++.+. |-...||..+..+|-.+... ..++.+...+++.+..+ |.....=|. ...
T Consensus 108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~ 177 (335)
T COG1413 108 PPLVELLENDENEGVRAAAARALGKLGDE------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELG 177 (335)
T ss_pred HHHHHHHHcCCcHhHHHHHHHHHHhcCch------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcC
Confidence 77777777 79999999888888766443 34777888888877433 211111111 111
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh--ChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV--GMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~--Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
.....+.+...++|....||.+|..+|+.+-... ....+...+++-+...+.+.-..+.
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 238 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLALG 238 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 1335678889999999999999999999887763 3345666666666555555554443
No 102
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=2e+02 Score=40.58 Aligned_cols=206 Identities=15% Similarity=0.091 Sum_probs=119.5
Q ss_pred CCcccccCCCCchhhhhhhh--ccChHHH----HHHHHHHHHhhhcCCCCC--CChHHHHHHHHHHhc-ccc-HHHHHHH
Q 000200 276 VDPVDILTPLEKSGFWEGVK--ATKWSER----KDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVN-IAVAVEA 345 (1871)
Q Consensus 276 ~~~vdIl~klpk~~f~~~l~--s~KWkeR----kEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk~l~-DsN-v~vv~~A 345 (1871)
+.+-|+.+++ ..|.+.+- .+-|..| .--|..+.++.+.-+-.. +--+...+.|..... |.| ..+--+-
T Consensus 203 ~sR~D~~~~~--~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTDVKDLL--LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred cccccHHHHH--HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 3444555555 35777752 3678888 344555555554333221 112345666666654 555 5666677
Q ss_pred HHHHHHHHHHhccc----------------------c------------------ccchhhhHHHHHHHhccCCHHHHHH
Q 000200 346 IQAIGNLARGLRTH----------------------F------------------SGSSRFLLPVLLEKLKEKKPTVAES 385 (1871)
Q Consensus 346 ~~~i~~lA~gLr~~----------------------F------------------~~y~~~~~~~lLeklKEKK~~V~eA 385 (1871)
.+|++.|.--.=++ | .-++..++--+|+-++|+-..||=+
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 78877554221111 1 1334578888999999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHH-HhhcCCch----hHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCC----
Q 000200 386 LTQTLQAMHKAGCLNLVDVVEDVKT-SVKNKVPL----VRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND---- 456 (1871)
Q Consensus 386 l~~aLda~~~~~~~~l~~~~e~i~~-al~~KnP~----vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~D---- 456 (1871)
+.+.+--+... .+ .++.|+++. .+.+=||. .=-.++.+|+..-..- -.+...+..++|.+++.+.=
T Consensus 361 aAKg~grvt~r--lp-~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG--lLlps~l~dVvplI~kaL~Yd~~~ 435 (1133)
T KOG1943|consen 361 AAKGLGRVTSR--LP-PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG--LLLPSLLEDVVPLILKALHYDVRR 435 (1133)
T ss_pred HHHHHHHHHcc--Cc-HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhhhh
Confidence 99988888765 34 333333332 22234443 2223444444332110 11123347889999988832
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 457 ----GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 457 ----s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
.-.-|||||+-.+=++.+.-....|.+++..|
T Consensus 436 G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L 471 (1133)
T KOG1943|consen 436 GQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSL 471 (1133)
T ss_pred cccccccchHHHHHHHHHHHHhcCChhhhhHHHHHH
Confidence 23569999999888888776666666665544
No 103
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.38 E-value=5 Score=43.17 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHh
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEKKP--TVAESLTQTLQAMHKA 396 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLeklKEKK~--~V~eAl~~aLda~~~~ 396 (1871)
.=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|...++.+.. .|++-+...+..|...
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999766 34466655555555443 2899999999999875
No 104
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.93 E-value=1.3e+02 Score=41.78 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred hccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHH
Q 000200 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVE 406 (1871)
Q Consensus 334 l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~-~~~~l~~~~e 406 (1871)
..-||+--+-..+..||.+|.-+|..|.++.-.++=++++++...-+.|...+..|+-+|+.. ++-+++.++.
T Consensus 557 ~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~ 630 (1014)
T KOG4524|consen 557 IKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIR 630 (1014)
T ss_pred hhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 347888888999999999999999999999999999999999999999999999999999987 3345666653
No 105
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.64 E-value=32 Score=42.73 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHH----h
Q 000200 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK----A 396 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~----~ 396 (1871)
.-..++..|..++. ++|=.....++.++..=...++..+ -..++..+..-|+|||+.||.+-..++-.++. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~---~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL---PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC---CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 45788999999998 9999999999988888887774333 36677888889999999999887777766654 1
Q ss_pred cCC-ChhhhHHHHHHH----hhcCCch---------------------------------------------------hH
Q 000200 397 GCL-NLVDVVEDVKTS----VKNKVPL---------------------------------------------------VR 420 (1871)
Q Consensus 397 ~~~-~l~~~~e~i~~a----l~~KnP~---------------------------------------------------vk 420 (1871)
... -+.++++.+.+. ..+..|. .-
T Consensus 96 ~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~ 175 (339)
T PF12074_consen 96 DSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS 175 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC
Confidence 011 122333333333 3333332 12
Q ss_pred HHHHHHHHHHHhhCChh----HHHHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChh
Q 000200 421 SLTLNWVTFCIETSSKA----AVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 421 ~etl~~L~r~l~~~~~~----~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
.+.+.|+.|.++..-.. ........+.-.++-++-.+ ..+||..|..++..++..-++.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 23344444444321100 00000234566677778788 8999999999999988876654
No 106
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=82.57 E-value=7.4 Score=47.96 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=85.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh--hhhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK--SSKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k--~~k~l~~ 939 (1871)
....||-.=.+.-|.|. + .|.+.-|-+++|.+||.-.+.+|+.+||++++.++.-+|+.|.+ .+|.|..
T Consensus 21 nT~enW~~IlDvCD~v~------~---~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVG------S---DPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred cccccHHHHHHHHHhhc------C---CCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 34557876555555442 1 22444699999999999999999999999999999999999986 4778888
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.+...+.+ .-+.|++.....+..|.+.+.=|.-+.-|.+..+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~ 134 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYK 134 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 88888885 4457999999999999997766665555554443
No 107
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=82.56 E-value=36 Score=41.57 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCCh----hhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHH
Q 000200 1162 ELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR----KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPE 1237 (1871)
Q Consensus 1162 ~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~----~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~ 1237 (1871)
.+++||..-+ +.+..+|||.|...++.|.--+.+.+.-.. ..+|. +-.+-|+
T Consensus 64 ~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VId-aGvVpRf---------------------- 119 (526)
T COG5064 64 PMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVID-AGVVPRF---------------------- 119 (526)
T ss_pred chhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHh-ccccHHH----------------------
Confidence 4667776656 889999999999999999988888775322 11222 1122222
Q ss_pred HHHHHHhcCCcccHhHHhh--------------------hhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHH-HH
Q 000200 1238 LFDTLRDEGYSLTESEAAV--------------------FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLP-YI 1296 (1871)
Q Consensus 1238 l~~~l~~~~y~lsd~Ea~~--------------------flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~-~l 1296 (1871)
++.|.+.+-.|-+.||+- -+|.+|.-+-++.+.||+.. .=.+..|-..|-.+. |+
T Consensus 120 -vefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQa---vWALGNiAGDS~~~RD~v 195 (526)
T COG5064 120 -VEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA---VWALGNIAGDSEGCRDYV 195 (526)
T ss_pred -HHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHH---HHHhccccCCchhHHHHH
Confidence 333445555556666654 47999999999888888742 334444444444443 44
Q ss_pred Hh--------hhccCChh--hHhHHHHHH-HHHHHhhcCcccCc-----cchHHHHHHHhccCChhHHHHHHHHHH
Q 000200 1297 LE--------GLRSKNNR--TRIECVDLV-GFLIDHHGAEISGQ-----LKSLQIVASLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1297 ~~--------glksKN~r--~R~Ecl~el-~~li~~~G~~v~~~-----~Kal~~ia~~i~drD~~VR~AALn~l~ 1356 (1871)
++ |+=.-|++ .-.--+.|. +.|- .|-+. .| .++|+.++|+|-.||+.|---|.=++.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlc--RGknP-~P~w~~isqalpiL~KLiys~D~evlvDA~WAiS 268 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC--RGKNP-PPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh--CCCCC-CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 43 22111211 011112221 2221 24332 22 478999999999999998777766555
No 108
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.55 E-value=7.2 Score=42.49 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=71.2
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. .+..=.|.+++|+++|...|.+++..|+..++.+.+--|..|... .+-++..|
T Consensus 17 l~~~dw~~ileicD~In~-------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l 89 (142)
T cd03569 17 LGEPDLASILEICDMIRS-------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDEL 89 (142)
T ss_pred cCccCHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 355677655555554421 123346899999999999999999999999999999999998764 45566666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLK-EKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklK-EKK~~V~eAl~~aLda~~~~ 396 (1871)
..-+. ...+.|++-+...+..|...
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 65554 34556888888888888765
No 109
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=1e+02 Score=42.58 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=58.9
Q ss_pred hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh
Q 000200 907 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK 971 (1871)
Q Consensus 907 sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~ 971 (1871)
||.-=+-.++.-||.+|..||..|..+.-..+-+++..+++.-+.++..|..|+-+++.+|+++.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s 624 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGS 624 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 55555567888999999999999999999999999999999999999999999999999998744
No 110
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=82.22 E-value=61 Score=43.40 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhc
Q 000200 322 DFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR 357 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr 357 (1871)
+..++++.||..++ .-..++|..-=+-+-.+|++|-
T Consensus 208 ~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~ald 244 (1102)
T KOG1924|consen 208 NLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALD 244 (1102)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcC
Confidence 44566666666665 5555555444444444555543
No 111
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.12 E-value=10 Score=40.83 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc-hh-hhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SR-FLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~-~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. .+.+=.+.+++|+++|...|.+++..|+.+++.+.+--|+.|... +. -++..|
T Consensus 13 ~~~~D~~~il~icd~I~~-------~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 13 LEEPDWALNLELCDLINL-------KPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred cCCccHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 345667554444443321 144457899999999999999999999999999999999999766 32 566666
Q ss_pred HHHhccC---CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK---KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK---K~~V~eAl~~aLda~~~~ 396 (1871)
..-+..+ .+.|++-+.+.+..|..+
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6666653 567888888888888775
No 112
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.37 E-value=2.2e+02 Score=38.70 Aligned_cols=112 Identities=14% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHh
Q 000200 1173 EDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1252 (1871)
Q Consensus 1173 ~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~ 1252 (1871)
=+++.-|-+.|+--+=++++...+...+..-+-| +-++-.++.+||..-.-+.-.|=+.|+..+-...-.+.|+
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi------v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI------VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH------HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH
Confidence 3666777788888888888877776655332222 1344556778876666666677777777777777788876
Q ss_pred HHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccc
Q 000200 1253 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1291 (1871)
Q Consensus 1253 Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~sk 1291 (1871)
|+..+|+|++-+||.++..-..|-..++..-..||.-|
T Consensus 394 -aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr 431 (948)
T KOG1058|consen 394 -AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR 431 (948)
T ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH
Confidence 56678999999999888887777777777766776444
No 113
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=81.30 E-value=35 Score=41.99 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=106.8
Q ss_pred ccChHHHHHHHHHHHHhhh--cCCCCC-CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHH
Q 000200 296 ATKWSERKDAVAELTKLAS--TKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPV 370 (1871)
Q Consensus 296 s~KWkeRkEaLe~l~~l~~--~pKi~~-~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~ 370 (1871)
.+.|-|=-..|..|.+.++ ++.+.- .+=..+.+.|.++++ ---.-|=..|+++.+.|=+.+|+. +.+...++
T Consensus 22 ~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~--- 98 (307)
T PF04118_consen 22 SSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIY--- 98 (307)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHH---
Confidence 5778888888888888666 444432 333467777777777 555666677777777777776643 33333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHH
Q 000200 371 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 450 (1871)
Q Consensus 371 lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l 450 (1871)
...+...+.+-.-+||-..+..+.+.+-..++ .+..+++.++..+
T Consensus 99 ----------------------------------~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~sl 143 (307)
T PF04118_consen 99 ----------------------------------SPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSL 143 (307)
T ss_pred ----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHh
Confidence 34455566666667888888888877765555 5556678899999
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 451 MECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
+.+++|...|+-+.....|..+...+|.+.
T Consensus 144 LpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 144 LPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 999999999999999999999999999883
No 114
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=81.22 E-value=16 Score=44.68 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcChhhhhh--hhHHHHHHHHhhhcC-ChhhHHHHHHHHHHHHhhcc--hhhHHHHHHHHhhccCchhHH
Q 000200 72 ALDALIAYLKAADADAGRY--AKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 146 (1871)
Q Consensus 72 ~leal~~~l~~a~~~~~~~--~~~~~~~lveK~L~~-r~~tk~~a~e~~l~~vE~e~--~~~v~e~ll~~~~~K~PKvva 146 (1871)
.|..+...+++...+.... -.+++..||-.++.+ .+..++.|.+|+=+|+=++. ....+..+...+..-.+-|..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3445556666654222222 237788888888874 78999999999999987765 356666677777666899999
Q ss_pred HHHHHHHHHHHhhCCCccCh----------hHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000200 147 PAIDVMFQALSEFGAKIIPP----------KRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1871)
Q Consensus 147 aai~~l~~~l~~FG~~vv~~----------K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1871)
.|+.++..++..||...++. ..+++.+-+.+.+.|+.||..+..-+.-|.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999976642 358999999999999999988766555443
No 115
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.14 E-value=1.1e+02 Score=41.06 Aligned_cols=343 Identities=17% Similarity=0.183 Sum_probs=193.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcCCCCCCCh-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-hccccccchhhhHH
Q 000200 292 EGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARG-LRTHFSGSSRFLLP 369 (1871)
Q Consensus 292 ~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy-~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g-Lr~~F~~y~~~~~~ 369 (1871)
+-+.+.|+.|+.=+-=-+.-|.... .|+ ..++..+++=|.-.|-.-|.+|++||+.+... |+..|.
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n----~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~-------- 148 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNEN----SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFA-------- 148 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcc----hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhh--------
Confidence 3467788888765544444444322 222 34556778888888999999999999988642 222221
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHh--hcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 370 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV--KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 370 ~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al--~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
+||--.| ..-.+-||+.+..-|-|.+.+.+...- ...+.
T Consensus 149 ------------------------------------~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~ 189 (938)
T KOG1077|consen 149 ------------------------------------DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWA 189 (938)
T ss_pred ------------------------------------hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHH
Confidence 1221111 123366788788888888887643322 14578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCC-C---CCCCCCccccCCCCCC
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-V---ATGTSSARVQTSGGSV 523 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~-~---~~~~~~~~~~~~~~~~ 523 (1871)
..++.+|||++=.|--|+...+..|.+.--+.--..+.-.+ +++.-.+-..+-. . =-.-|. |+
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av-----s~L~riv~~~~t~~qdYTyy~vP~---PW----- 256 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV-----SRLSRIVVVVGTSLQDYTYYFVPA---PW----- 256 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH-----HHHHHHHhhcccchhhceeecCCC---hH-----
Confidence 88999999999999999998888888776643211111111 1222222111000 0 000000 00
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
-.++- -+...-- |++. |. ......-|+-+++.....
T Consensus 257 --------L~vKl--~rlLq~~-p~~~--------------------------------D~-~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 257 --------LQVKL--LRLLQIY-PTPE--------------------------------DP-STRARLNEVLERILNKAQ 292 (938)
T ss_pred --------HHHHH--HHHHHhC-CCCC--------------------------------Cc-hHHHHHHHHHHHHHhccc
Confidence 00000 0000000 1100 00 000011222222211111
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCC---CccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG---WSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~Pg---wkesNfqV~~~~leil~~la~~~~~fs~~ 680 (1871)
+ --.+++-.++.+-=--|.+.+.-.-..|.+.+++.|.....-. -+|+|..-+ .||-++.++. +.|+-.
T Consensus 293 ~----~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL--aLEsm~~L~s--s~~s~d 364 (938)
T KOG1077|consen 293 E----PPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL--ALESMCKLAS--SEFSID 364 (938)
T ss_pred c----CccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhh--hHHHHHHHHh--ccchHH
Confidence 1 0145666666665555666766655556666777666543322 389998754 5787887776 366533
Q ss_pred ch----hhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccC
Q 000200 681 CV----VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS 752 (1871)
Q Consensus 681 ~~----~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~ 752 (1871)
.+ ..++..+- .--|+-+|..|-++|-++|......-++++++.++ .+-.+-+++|-..-++=+-+.|..+
T Consensus 365 avK~h~d~Ii~sLk-terDvSirrravDLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 365 AVKKHQDTIINSLK-TERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHhcCC
Confidence 33 34444432 02377789999999999999999999999999996 6788888888877776666677654
No 116
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.13 E-value=8.2 Score=42.01 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=71.8
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
+.+.+|.-=.|.-|.+. .. ...=.+.+++|+++|. ..|.+|+..|+..++.+.+-=|..|... .+-++..
T Consensus 14 l~~~dw~~ileicD~In----~~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 14 LQSEDWGLNMEICDIIN----ET---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCcCHHHHHHHHHHHh----CC---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 45567866555544432 11 2234689999999998 6799999999999999999999999876 3567776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000200 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 -lLeklKEKK---~~V~eAl~~aLda~~~~ 396 (1871)
|+..+..+. ..|.+-+.+.+..|...
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 666666543 37888888889888764
No 117
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=80.64 E-value=36 Score=38.75 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCc-hhhh-h------------hhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhhh
Q 000200 26 KVRNEANIDLAALCDSITDPKD-NRIR-E------------LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYA 91 (1871)
Q Consensus 26 KaRl~ayeel~~~f~~~~d~~d-~~~~-~------------~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~~ 91 (1871)
|.|++|..-|...++.. +.+. .-|| . -.+++.-++.|.|.-+.-.++.++.+++++... +-..+
T Consensus 1 kvR~~Al~~L~al~k~~-~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKST-DKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhc-CCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHHHH
Confidence 78999999998888753 2221 0111 1 134555568999999999999999999988533 11111
Q ss_pred hHHHHHHHHh--hhcCChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhCCCccC---
Q 000200 92 KEVCDAIAAK--CLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP--- 165 (1871)
Q Consensus 92 ~~~~~~lveK--~L~~r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~-~K~PKvvaaai~~l~~~l~~FG~~vv~--- 165 (1871)
++-- .+ .|++ .+..+..+..| +=+.|+-++. .+++-+...++.++..++...=..-++
T Consensus 79 e~~~----~~~~sFts------lS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~l 142 (182)
T PF13251_consen 79 EESK----GPSGSFTS------LSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGL 142 (182)
T ss_pred HhcC----CCCCCccc------HHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhH
Confidence 1000 01 1111 23333333333 2233444444 467888999999999888887776665
Q ss_pred hhHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000200 166 PKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1871)
Q Consensus 166 ~K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1871)
+..++..+.+++.|.|.+||-.+...++.+-
T Consensus 143 l~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 143 LTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5678899999999999999999877766553
No 118
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=77.99 E-value=12 Score=41.39 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=57.2
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcC----CCCCCChHHHHHHHHHHhc-cc-------cH--HHHHHHHHHHHHHHH
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTK----RIAPGDFTEVCRTLKKLIT-DV-------NI--AVAVEAIQAIGNLAR 354 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~p----Ki~~~dy~eL~~~Lkk~l~-Ds-------Nv--~vv~~A~~~i~~lA~ 354 (1871)
+....|.|.|=+||.+|||+|..+++.+ .+..-.|..++.+|-+.+. .. +. .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 4677899999999999999999988655 3445579999999988774 22 11 233345566666666
Q ss_pred HhccccccchhhhHHHHHHHhccCC
Q 000200 355 GLRTHFSGSSRFLLPVLLEKLKEKK 379 (1871)
Q Consensus 355 gLr~~F~~y~~~~~~~lLeklKEKK 379 (1871)
.|| .++-.-..++|-|+
T Consensus 88 ~lR--------~~ve~~~~~~k~kt 104 (155)
T PF11640_consen 88 ALR--------LFVEKSNSRLKRKT 104 (155)
T ss_pred HHH--------HHHHHHHhhcccch
Confidence 555 44444555666665
No 119
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.84 E-value=8.1 Score=41.08 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH---h--------ccCCHHHHHHHH
Q 000200 319 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK---L--------KEKKPTVAESLT 387 (1871)
Q Consensus 319 ~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLek---l--------KEKK~~V~eAl~ 387 (1871)
.++++.+++..|-++|.|.+..|-..+++||..|+..=+..|....+--...|-+. - .+--..||+++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 34668899999999999999888899999999999998888988766554433221 1 234568999999
Q ss_pred HHHHHHHHh
Q 000200 388 QTLQAMHKA 396 (1871)
Q Consensus 388 ~aLda~~~~ 396 (1871)
++++++|.+
T Consensus 112 El~~~if~~ 120 (122)
T cd03572 112 ELIKAIFSY 120 (122)
T ss_pred HHHHHHhcc
Confidence 999999865
No 120
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=76.06 E-value=33 Score=38.99 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=79.0
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC--hhH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 438 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~-~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~--~~~ 438 (1871)
.++|-++|-+.|++---+=-+.+++.-+... +.-. +.+++-.|..||.+++|.|...++.-|...+...+ -..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4566666777777665554444444444443 1111 44666778899999999999999999988765443 133
Q ss_pred HHHhhhhhHHHHH--hhhC---------CCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 439 VLKVHKDYVPICM--ECLN---------DGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 439 ~~~~~k~~~~~l~--k~l~---------Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+.+..+.++|.+- +.-+ .....++|--.++|..|=+.=|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 4456677777766 2222 45688999999999999999998765
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=76.05 E-value=59 Score=44.35 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=111.9
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLL 372 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~~~~~lL 372 (1871)
++++.=++|.+|+..+...... ..|...|+..+-|-+.--|+-+=-+--==+...|++ .|. +...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~----G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~P~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL----GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----KPELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHH
Confidence 7888889999999997653321 123556655444444333444433333334444443 333 778899999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hHHHHH
Q 000200 373 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 451 (1871)
Q Consensus 373 eklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~~~l~ 451 (1871)
.-|.|..+-+|-.+..+|-.+=.. -=++.+++.|...++|++|.||..+..-+..+++-.+.-. +.. .+-++.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~----~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLY----HELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhh----hcccHHHHHH
Confidence 999999999998777776654221 1134566778889999999999999999999986442211 122 455667
Q ss_pred hhhCCCCHHHHHHHHHHHHHHHH
Q 000200 452 ECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 452 k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
.++.|++|.|--+|..+|..+-.
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999999998888877653
No 122
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.35 E-value=82 Score=41.99 Aligned_cols=185 Identities=20% Similarity=0.244 Sum_probs=120.0
Q ss_pred cCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 000200 767 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 846 (1871)
Q Consensus 767 ~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lp 846 (1871)
||+..|-.||..|..|+...|=..||++.. .+.=+.||..|.-
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~------e~mD~i~~kQf~~------------------------------- 224 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHA------EEMDSIIQKQFEE------------------------------- 224 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccH------HHHHHHHHHHHHH-------------------------------
Confidence 599999999999999999999888887632 1122334444432
Q ss_pred ccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHh
Q 000200 847 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 925 (1871)
Q Consensus 847 rvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~a 925 (1871)
+++-++|+==-+|.+|.+-|-+++.+==--|-|+.+.||+.-.-.-| .|+-.-|-..+.+++..++-
T Consensus 225 -----------l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 225 -----------LYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred -----------HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 33334555556899999999999975334577777677766666666 67777777777777776652
Q ss_pred cChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh--ccchhhhH--HHHHHHhcccCCcchHHHHHHHHHHHh
Q 000200 926 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA--VHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1871)
Q Consensus 926 mG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~--~gl~~~~~--~i~~~L~~~~~~p~~r~e~l~wL~~~l 1001 (1871)
.|-+-.....++|++=-.|-|+-..||=|+...|-.+-+. ..+-.+++ .+..-|...+ .|.-|.-+.--+.-+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~-~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDS-RPVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhccc-cHHHHHHHHHHHHhhc
Confidence 2333344566777777778899999999999988765433 23333333 4455555443 2334444444444444
Q ss_pred c
Q 000200 1002 T 1002 (1871)
Q Consensus 1002 ~ 1002 (1871)
+
T Consensus 371 P 371 (1005)
T KOG1949|consen 371 P 371 (1005)
T ss_pred C
Confidence 3
No 123
>PF05536 Neurochondrin: Neurochondrin
Probab=74.73 E-value=39 Score=44.88 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=120.3
Q ss_pred HHHHHHHhhhcCCCCC-CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHHHHhccCCHH
Q 000200 305 AVAELTKLASTKRIAP-GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPT 381 (1871)
Q Consensus 305 aLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~~~~~lLeklKEKK~~ 381 (1871)
|+.-|...+..|.+.. .++-+-+..|-+++. .+...++..+++|+..|+ +-.++.... ....++.|.+-+.. ++.
T Consensus 77 avsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~ 154 (543)
T PF05536_consen 77 AVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSF 154 (543)
T ss_pred HHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence 3444455666777774 578888899999997 555799999999999999 555554433 45678888888777 777
Q ss_pred HHHHHHHHHHHHHHhcC--------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh-----HHHHhhhhhHH
Q 000200 382 VAESLTQTLQAMHKAGC--------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-----AVLKVHKDYVP 448 (1871)
Q Consensus 382 V~eAl~~aLda~~~~~~--------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~-----~~~~~~k~~~~ 448 (1871)
..|-+...|-.++.... ..+..++..+..-+..---..|-+.+.+|...|...+.- ....-.+++..
T Consensus 155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~ 234 (543)
T PF05536_consen 155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRK 234 (543)
T ss_pred hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHH
Confidence 77777776666654311 112344555655555555667889999999999876311 11122344444
Q ss_pred HHHhhh-CCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 449 ICMECL-NDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 449 ~l~k~l-~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
.+...| +--.+.-|+.+..+.+.++.+.|.+.+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 455544 667789999999999999999998754
No 124
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.62 E-value=55 Score=43.66 Aligned_cols=129 Identities=17% Similarity=0.232 Sum_probs=92.0
Q ss_pred cchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhh--ccCccchHHHHHh--
Q 000200 1223 SNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVN--FYSATKTLPYILE-- 1298 (1871)
Q Consensus 1223 tN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~--vyp~skvf~~l~~-- 1298 (1871)
.|.+.--++|+|+..+|+-|- +|.+++.=..-|+-||+--.--+--+||-++-.|+..+.. .--..-||.-|.+
T Consensus 54 Kresi~dRIl~fla~fv~sl~--q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 54 KRESIPDRILSFLARFVESLP--QLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred cCCCcHHHHHHHHHHHHHhhh--ccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 455566788999999999887 7788888666666666544433556799999999999987 5555567776655
Q ss_pred --hhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhc-cCChhHHHHHHHHHH
Q 000200 1299 --GLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTA-ERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1299 --glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~-drD~~VR~AALn~l~ 1356 (1871)
-++-|-+-+|.|.+-.|.++-+.-|= ....+....+..|. |..+.||.|||.++.
T Consensus 132 ~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 132 LIRLKDREPNVRIQAVLALSRLQGDPKD---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHHhccCchHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 45778888999999888887532221 11123344455554 899999999999886
No 125
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.15 E-value=70 Score=39.73 Aligned_cols=181 Identities=19% Similarity=0.200 Sum_probs=121.4
Q ss_pred CCCChHHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhh
Q 000200 863 ESPDWKVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVL 938 (1871)
Q Consensus 863 ~d~~WK~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~ 938 (1871)
.+.+=.+|-.|||.++.+++ .||..++-++ +...|. -+++++..|-..|+.+||..+.-=-+.-+.. -...+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~gg---l~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGG---LVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccC---HHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 44556778899999999986 3777777655 666666 7899999999999999988776533322222 22366
Q ss_pred HHHHHHhc-cCchhHHHHHHHHHHHHHHhc--cchhhhH-----HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCc-c
Q 000200 939 SDILKCLG-DNKKHMRECTLTVLDAWLAAV--HLDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-D 1009 (1871)
Q Consensus 939 ~~il~~l~-D~K~~vR~aa~~alda~~~~~--gl~~~~~-----~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~-~ 1009 (1871)
..++..|. |.--.+|..|+-|+.+....- |.+.|+. .+.++|.+++.+..++.-++..+..-+....... .
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777666 444478899999998887653 6677765 6888898766677788888888887776655432 2
Q ss_pred hhhhhhH--HhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000200 1010 AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1871)
Q Consensus 1010 ~~~~~~p--~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1871)
.....-+ +.....-=..+++.++-..+..++...-...
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 2333222 2222222245788887777777666554433
No 126
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.89 E-value=2.1e+02 Score=34.55 Aligned_cols=193 Identities=15% Similarity=0.193 Sum_probs=127.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccH-HHHHHHHHHHHHHHHHhccccccchhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNI-AVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv-~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
-|.+++ ..|.-=..+|..+..|.+.+.+.++...++++.+-+-+. -+.. ..-....+++..|...-+.........
T Consensus 46 F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~ 123 (262)
T PF14500_consen 46 FFCSRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDD 123 (262)
T ss_pred HHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhH
Confidence 456666 468888888999999888777777776667766655332 1111 122233444444444433223334445
Q ss_pred hHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---------cCC-c--hhHHHHHHHHHHHHhh
Q 000200 367 LLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---------NKV-P--LVRSLTLNWVTFCIET 433 (1871)
Q Consensus 367 ~~~~lLekl-KEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~---------~Kn-P--~vk~etl~~L~r~l~~ 433 (1871)
++..+++-. +||=|.-.--+-+-+..+... ..+.+..|++.+.+. -+| | --|.+.-.=|.+||..
T Consensus 124 fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s 201 (262)
T PF14500_consen 124 FVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS 201 (262)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 555555544 677775554444555555543 556778888877663 222 2 2456777788888875
Q ss_pred CChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCH
Q 000200 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 490 (1871)
Q Consensus 434 ~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~ 490 (1871)
++. +...++|.++.-|+.+.+.|+.-+.++|.......|.+.+.++...+=+
T Consensus 202 ~~~-----fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 202 TPL-----FAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred cHh-----hHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 532 2356789999999999999999999999999999999999999887643
No 127
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=73.64 E-value=7.1 Score=52.66 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=90.0
Q ss_pred hhhhhhccChHHHHHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHhc--ccc-HHHHHHHHHHHHHHHHHhc-cccccch
Q 000200 290 FWEGVKATKWSERKDAVAELTKL-ASTKRIAPGDFTEVCRTLKKLIT--DVN-IAVAVEAIQAIGNLARGLR-THFSGSS 364 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l-~~~pKi~~~dy~eL~~~Lkk~l~--DsN-v~vv~~A~~~i~~lA~gLr-~~F~~y~ 364 (1871)
+.+.+.=..--.|.+.|+-+..+ ...+-+.+.+.+.++..|-.+=. |.| ..|-..|++|++.|.+-+. +...+|.
T Consensus 914 LLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr 993 (1030)
T KOG1967|consen 914 LLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR 993 (1030)
T ss_pred HHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc
Confidence 45666778888899999998875 46788888888889988877765 555 5666789999999999887 5588999
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~ 396 (1871)
..++.++...+.|||--||.-+..|=..|+.-
T Consensus 994 ~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 994 PLVLRALIKILDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999999999889764
No 128
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=72.47 E-value=44 Score=40.78 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccccccchh--hhHHHHH-HHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHH
Q 000200 347 QAIGNLARGLRTHFSGSSR--FLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 347 ~~i~~lA~gLr~~F~~y~~--~~~~~lL-eklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1871)
.+++.+-+-....+.+... .++..++ --++-.-+.||+.+..||=-.+-..-..-.+.+.-+...++...+.+|..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344444444445665433 6666655 566667789999999998876654111112334445666766689999999
Q ss_pred HHHHHHHHhhCChhHHHHh--------hhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 424 LNWVTFCIETSSKAAVLKV--------HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~--------~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
++-+...+-.++...+... ...+...+.+.+++.++++|..|+++++.|+-.
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999987654433222 246888999999999999999999999998843
No 129
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=72.00 E-value=11 Score=49.84 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=107.8
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCCh--HHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccccccch
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF--TEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy--~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~y~ 364 (1871)
.|.+.+..+.=-||.+--..|...+ +..+.|| .-+...|-..+. |+...+++..++|...+..+ .|-
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~------eyq 328 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEE------EYQ 328 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhcccc------ccc
Confidence 3555555554455544444433311 1112221 233444444443 76777777777776666554 388
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHH
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 440 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~ 440 (1871)
..++|.|+.-|+-.=..||=-+..=++....+ ++ .+.++..+..++...||.+|.+|++.+.-.....++..++
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 88999999999999999999999999998886 55 3356678888999999999999999998777665554443
Q ss_pred HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 441 ~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
-.++..+.+.-.|.++++|....-|+|.+.
T Consensus 407 ---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 ---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred ---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 223344444444444555544444444443
No 130
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=71.19 E-value=41 Score=41.80 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=60.2
Q ss_pred cchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH----h--
Q 000200 894 GELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA----A-- 966 (1871)
Q Consensus 894 geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~----~-- 966 (1871)
..+...|-.-+ +|+|-......+..++.-...++.. ..+.++..+.+.|+|+|+++|.+-+.++-..+. .
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~---~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE---LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 56677777766 7899988888777777777666322 245667778889999999999999999888764 1
Q ss_pred -ccchhhhHHHHHHHh
Q 000200 967 -VHLDKMVPYVTTALT 981 (1871)
Q Consensus 967 -~gl~~~~~~i~~~L~ 981 (1871)
.-...+++.+.+.++
T Consensus 98 ~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 123455555555553
No 131
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=71.18 E-value=19 Score=38.30 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh--hhHHHHHhhh--------CCCCHHHHHHHHHH
Q 000200 399 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK--DYVPICMECL--------NDGTPEVRDAAFSV 468 (1871)
Q Consensus 399 ~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k--~~~~~l~k~l--------~Ds~~~VR~aA~~~ 468 (1871)
.++.+++|.+..-|++|.|.||.-+|..|..|....+......+.+ .++..+...- +|....||++|.++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 3466788889999999999999999999999887765333222211 2333333221 56678999999999
Q ss_pred HHHHH
Q 000200 469 LAAIA 473 (1871)
Q Consensus 469 l~~lm 473 (1871)
+..|.
T Consensus 114 ~~~if 118 (122)
T cd03572 114 IKAIF 118 (122)
T ss_pred HHHHh
Confidence 98774
No 132
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=11 Score=49.74 Aligned_cols=91 Identities=25% Similarity=0.292 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCChh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCC
Q 000200 380 PTVAESLTQTLQAMHKAGCLNLV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~~~~~l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~ 458 (1871)
+++.+ +.=||+-+....+-.|. |+..||.+-|.|-.|-+|.-+...|.|.|.+.|.+ ++.+.|-+..-|+|+|
T Consensus 121 ~n~ye-~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 121 SNVYE-VGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPD 194 (877)
T ss_pred Cccch-hhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCC
Confidence 34444 33455555433112233 78899999999999999999999999999877543 3788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000200 459 PEVRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 459 ~~VR~aA~~~l~~lmk~~ 476 (1871)
|.|-.||...+..|.+.-
T Consensus 195 p~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKN 212 (877)
T ss_pred chHHHHHHHHHHHHHhhC
Confidence 999999999998887753
No 133
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=69.79 E-value=22 Score=49.72 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccchH---HHHhhhc---cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHH
Q 000200 868 KVRLESIEAVNKILEEANKRIQPAGTGELF---GGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 941 (1871)
Q Consensus 868 K~RkEaLe~v~~il~~ankrI~p~~~geL~---~aLk~rl---~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~i 941 (1871)
-+|.-|.-.++-+.. .+.+.+...++ ..|-.-| .|+|- .-...+.....++.-||..+.+ .-..+|.+
T Consensus 748 ~errgael~L~~l~~----~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSK----MFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHH----HhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHH
Confidence 457777767765553 33333322222 1222223 23442 4556677777888899988888 77889999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHhccchhh---hHHHHHHHh-cccCCcchHHHHHHHHHHHhccCC--CCcchhh-hh
Q 000200 942 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKM---VPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLS--GFPDAAH-LL 1014 (1871)
Q Consensus 942 l~~l~D~K~~vR~aa~~alda~~~~~gl~~~---~~~i~~~L~-~~~~~p~~r~e~l~wL~~~l~~~~--~~~~~~~-~~ 1014 (1871)
+.++.-.-..+|.++..|+..++.....+.+ ++.+...|. ..++ .|++...-+..+|...- ....... ++
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~---~~r~~a~e~~~~l~~~l~~~l~~~~~Llv 898 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKF---VRRQGADELIELLDAVLMVGLVPYNPLLV 898 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhH---hhhhhHHHHHHHHHHhhcccccccceeeh
Confidence 9999999999999999999999887654433 333333332 1121 23333333333443322 1222333 56
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHH
Q 000200 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQET 1047 (1871)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~ 1047 (1871)
+|++-|+.|-...||.+|..+...++..++.+.
T Consensus 899 ~pllr~msd~~d~vR~aat~~fa~lip~~~le~ 931 (1549)
T KOG0392|consen 899 VPLLRRMSDQIDSVREAATKVFAKLIPLLPLEA 931 (1549)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhccccccc
Confidence 779999999999999999999999999988775
No 134
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.83 E-value=32 Score=34.81 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000200 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERS 484 (1871)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~ 484 (1871)
++.+...+.+..|.+|.+.+.-|.+.+.+.. ... .....++..+...|.|.++-|==+|..+|+++......+.+..+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~-~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPV-IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cch-hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 4455566678889999999999999998765 111 12366788999999999999999999999999999988777666
Q ss_pred hhc
Q 000200 485 IEK 487 (1871)
Q Consensus 485 l~~ 487 (1871)
++.
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 553
No 135
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.56 E-value=4.7e+02 Score=35.98 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=141.2
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~ 366 (1871)
.++...+.|.|=.++.||+..+..++..- .|-++++.+.-|-+.--|+-|--+--=-+=..|. +.+- +-.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE-----eqpdLALL 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE-----EQPDLALL 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh-----cCCCceee
Confidence 56777889999999999999988865322 2578888888887776776665444333333332 3444 445
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1871)
-+..+=.-|||.++-+|..+..+|..|=-. .+.. ++--|..+..+-.|-||..+.+-+..+..-.+. ....
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-----~k~q 180 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-----QKDQ 180 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-----hHHH
Confidence 567777889999999999888777766321 1222 234566677788999999999999888864321 1135
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHH----HHhC--hhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIA----KSVG--MRPLERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lm----k~~G--e~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
+...+-++|+|.+|-|--+|..|+-.+- .+++ +|.+=.++.++|+=-.--+..++-.+
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RY 244 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRY 244 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHH
Confidence 6778889999999999999988887664 4454 77788888888877666666665443
No 136
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.55 E-value=1.5e+02 Score=40.41 Aligned_cols=210 Identities=13% Similarity=0.143 Sum_probs=128.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1871)
++.-+-+...+=-+||-|+-....++. .-|+...-+..+-+++|.|.+-.|...++.+|..+.+- ++..-.|.|
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~ir-----K~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr 218 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIR-----KVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFR 218 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHH-----cCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHH
Confidence 334444566777889988888877774 44665444566778889999988888888887777654 111111222
Q ss_pred hhhH---------------------------------HHHHHhccCchhHHHHHHHHHHHHHHhc------cchhhhHHH
Q 000200 936 GVLS---------------------------------DILKCLGDNKKHMRECTLTVLDAWLAAV------HLDKMVPYV 976 (1871)
Q Consensus 936 ~l~~---------------------------------~il~~l~D~K~~vR~aa~~alda~~~~~------gl~~~~~~i 976 (1871)
-+++ .+|..||-+-+..-++.-.-|...+..| |-..++|.+
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 2333 3344566665555566666666666543 445555555
Q ss_pred HHHHhcccCCcchHHHHHHHHHHHhccCCCC--------------cchhhhhh---HHhhhcCCCCHHHHHHHHHHHHHH
Q 000200 977 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--------------PDAAHLLK---PASIAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 977 ~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--------------~~~~~~~~---p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
-.-+.- ..|+.+|--...-|.+.|.+-... .+....-. .|+.||+|.+.-+|+.|-+++-.+
T Consensus 299 ~TI~~I-~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 299 RTIMDI-RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHhc-cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 554441 124667888888888777654331 01111111 277799999999999999999877
Q ss_pred HHhcCHHHHHHH----hhccCchhH----HHHHHHHHhccC
Q 000200 1040 LRAGGQETIEKN----LKDIQGPAL----ALILERIKLNGA 1072 (1871)
Q Consensus 1040 m~~~G~~~~~~~----~~~Lk~~~~----~~i~~~l~ka~~ 1072 (1871)
+..---..|.+. +...++..| ..|.+..|++.|
T Consensus 378 vn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 378 VNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred hccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 665555554443 333344444 456677777764
No 137
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.71 E-value=27 Score=50.06 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=101.3
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 757 K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
-.+|.++..- |.+.|-.+|-.|++|+|.|..--+.-+- + ..
T Consensus 258 ~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~----~--------------~~-------------------- 298 (1266)
T KOG1525|consen 258 LAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS----E--------------TY-------------------- 298 (1266)
T ss_pred HHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc----c--------------cc--------------------
Confidence 4677788776 9999999999999999998742211100 0 00
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
| -+=..|+.++.|..--+|-|.++-.-.++- +|+-|.-+ -.+.-+|+-|..|-+.++-++++
T Consensus 299 ---------~------~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~-~~~~~~~~--~~~~~~l~~~~~D~~~rir~~v~ 360 (1266)
T KOG1525|consen 299 ---------D------DLWSAFLGRFNDISVEVRMECVESIKQCLL-NNPSIAKA--STILLALRERDLDEDVRVRTQVV 360 (1266)
T ss_pred ---------h------HHHHHHHHHhccCChhhhhhHHHHhHHHHh-cCchhhhH--HHHHHHHHhhcCChhhhheeeEE
Confidence 0 022468888999999999999999999885 34433333 23556777788888887765543
Q ss_pred HHHHHHHHhcChhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHh
Q 000200 917 ITLGAVASAMGPAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 966 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~ 966 (1871)
-.+..++ .|. .+...++--+.+++-|+|..||.-|+..|+.++..
T Consensus 361 i~~~~v~-----~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 361 IVACDVM-----KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EEEeehh-----HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2111111 121 23333666778999999999999999999999884
No 138
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=65.47 E-value=32 Score=43.15 Aligned_cols=197 Identities=16% Similarity=0.214 Sum_probs=113.8
Q ss_pred cCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc---CCC
Q 000200 601 LIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---TKF 677 (1871)
Q Consensus 601 l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~---~~f 677 (1871)
.|+.+-+....+.-+-.|.+|++++.+.+++. -..+.++.|+.+..+.... ..|
T Consensus 420 kfgeePiakikedhfenlkagieeiReaIddi-----------------------saekfqasfelikciiahlikehkf 476 (666)
T KOG4825|consen 420 KFGEEPIAKIKEDHFENLKAGIEEIREAIDDI-----------------------SAEKFQASFELIKCIIAHLIKEHKF 476 (666)
T ss_pred HhccCcccchhHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHcchhhh
Confidence 33344444444445555555555555554442 2234555555555544322 345
Q ss_pred Cccchhhhc----cchhhccccc--h---hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHH
Q 000200 678 PKKCVVLCL----LGISERVADI--K---TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 748 (1871)
Q Consensus 678 s~~~~~~~l----~~lveKlgD~--K---~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~e 748 (1871)
++-.-+.|+ +.+.-.-||. . +-....+.|-.+-|+-..+.|-+.+...+..+|.|-+--.--.-|...+.+
T Consensus 477 skledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkd 556 (666)
T KOG4825|consen 477 SKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKD 556 (666)
T ss_pred hhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHh
Confidence 554433333 2333344553 2 335556778888999999999999999988899998866666667777777
Q ss_pred hccCccch--HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH--------HHHHHHHHHHhcCCC
Q 000200 749 FGVSHLKL--KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP--------ALLSALDAEYEKNPF 818 (1871)
Q Consensus 749 FG~~~~~~--K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp--------all~~ie~EF~K~~~ 818 (1871)
.|-..--+ --.-.|.--+ +.+.=-.+|.+|....+.||+- +.++...+++.| -+...+-+.|+|..|
T Consensus 557 lgkGragfiediakkfgVpa-eehglndkreaafaiicdmtrd--hQarsIgedLmpddskngriilvksefEgFAkiDg 633 (666)
T KOG4825|consen 557 LGKGRAGFIEDIAKKFGVPA-EEHGLNDKREAAFAIICDMTRD--HQARSIGEDLMPDDSKNGRIILVKSEFEGFAKIDG 633 (666)
T ss_pred cCCCccchhHHHHHHhCCCc-cccchhHHHHhHhhhhhhhccc--HHHHHHHhhcCcccccCCceEEeHHHhhhhhhccC
Confidence 77532111 1111222222 3444456999999999999973 333444444433 255667777888866
Q ss_pred CCCCC
Q 000200 819 EGTVV 823 (1871)
Q Consensus 819 ~~~p~ 823 (1871)
...++
T Consensus 634 randa 638 (666)
T KOG4825|consen 634 RANDA 638 (666)
T ss_pred CCChH
Confidence 44444
No 139
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=61.73 E-value=41 Score=37.13 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=59.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHcc--cCCCCCCccchHHHHhhhc-cc-------hhH--hHHHHHHHHHHHHHH
Q 000200 857 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL-YD-------SNK--NLVMATLITLGAVAS 924 (1871)
Q Consensus 857 ~l~~~l~d~~WK~RkEaLe~v~~il~~an--krI~p~~~geL~~aLk~rl-~D-------sNk--~lv~~al~ii~~lA~ 924 (1871)
+++..+++.+=|+|+.|||.+..|+.... ..+....+..++.+|-.-+ .+ .+. .-+..+.+-++..|.
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46788999999999999999999997432 5566666888888886544 11 111 112223344444444
Q ss_pred hcCh-------hHH-hhhhhhhHHHHHHhccCc
Q 000200 925 AMGP-------AVE-KSSKGVLSDILKCLGDNK 949 (1871)
Q Consensus 925 amG~-------~~~-k~~k~l~~~il~~l~D~K 949 (1871)
+++- .|. +.++.++..|.+.|.+.-
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 4432 232 345667777777777766
No 140
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=61.66 E-value=79 Score=43.22 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000200 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1871)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~ 788 (1871)
..+.+- ++|.||.+|.=+|..|+.+ +.+ ==+..+++-++++ +.+++|-||..|+-.++.+|+
T Consensus 95 Nti~kD-l~d~N~~iR~~AlR~ls~l----~~~-el~~~~~~~ik~~-l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 95 NTIQKD-LQDPNEEIRGFALRTLSLL----RVK-ELLGNIIDPIKKL-LTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHhh-ccCCCHHHHHHHHHHHHhc----ChH-HHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHh
Confidence 344444 4788888888888887754 221 1134677778886 888888888888888888884
No 141
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=61.04 E-value=16 Score=49.67 Aligned_cols=122 Identities=22% Similarity=0.325 Sum_probs=94.2
Q ss_pred CCccccccCCc---HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc--cchh-HhHHHHHHHH
Q 000200 845 LPREDISGKFT---PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSN-KNLVMATLIT 918 (1871)
Q Consensus 845 lprvDIs~kit---~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl--~DsN-k~lv~~al~i 918 (1871)
+|-.=|.+.++ |=++..++=++=-+|.+.++.+.-.+.++. -+++.-++-+++-|-.-= .|+| ..|--.||+|
T Consensus 898 vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqc 976 (1030)
T KOG1967|consen 898 VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQC 976 (1030)
T ss_pred CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHH
Confidence 44444444444 445778899999999999999999999874 455544578888775433 4555 3344589999
Q ss_pred HHHHHHhcChh-HHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc
Q 000200 919 LGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 967 (1871)
Q Consensus 919 i~~lA~amG~~-~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~ 967 (1871)
++.|.+-.-.+ .-.|..-++.+++.+|.|+|--||..|..|=..|+.-.
T Consensus 977 L~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 977 LNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 99999977644 56788899999999999999999999999999998654
No 142
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.90 E-value=2.2e+02 Score=42.97 Aligned_cols=181 Identities=12% Similarity=0.171 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHHHHhh-hcCCCCC-CCh---HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Q 000200 298 KWSERKDAVAELTKLA-STKRIAP-GDF---TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1871)
Q Consensus 298 KWkeRkEaLe~l~~l~-~~pKi~~-~dy---~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~l 371 (1871)
+=.-|.-|++.|..++ +--.... .+| .++++-+-.++. -.+..|--+.++|+..|-.+-+.++..--+.+|.-+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 4345677777765543 1111111 344 378888888887 777889999999999888887777766677888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHhc--CC------ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHHhh---CC----
Q 000200 372 LEKLKEKKPTVAESLTQTLQAMHKAG--CL------NLVDVVEDVKTSVKNKV-PLVRSLTLNWVTFCIET---SS---- 435 (1871)
Q Consensus 372 LeklKEKK~~V~eAl~~aLda~~~~~--~~------~l~~~~e~i~~al~~Kn-P~vk~etl~~L~r~l~~---~~---- 435 (1871)
---++|+...+++.+-+++..|+..+ ++ .+.|+++-+..+.+++. +.+=..++.+|..|... .+
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 87889999999999999998886541 11 23355555555555554 66666777777755211 00
Q ss_pred -h------------------h------HHHHhhhhhHHH---HHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 436 -K------------------A------AVLKVHKDYVPI---CMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 436 -~------------------~------~~~~~~k~~~~~---l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
+ . .-.....-+.|. +..+..|..++||..|...|-.+++.-|.
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 000111334554 44567899999999999999888888774
No 143
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.62 E-value=25 Score=40.09 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=67.2
Q ss_pred cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000200 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1369 (1871)
Q Consensus 1290 skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~ 1369 (1871)
.+.++.+++-.-+.|...|.-+++.|+.++ +.|+. .|..+++.+-.+.+|.|+.+|+-|...+...
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il-~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l----------- 72 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELIL-RQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKEL----------- 72 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHH-----------
Confidence 567888899889999999999999998854 68984 5666789999999999999999999988844
Q ss_pred hccCCHHHHhhHHHHHHHh
Q 000200 1370 VGKLTDAQKSMLDDRFKWK 1388 (1871)
Q Consensus 1370 ~g~ls~k~~s~Leer~kr~ 1388 (1871)
-+|--+|++-|+-..
T Consensus 73 ----~eK~~s~v~~~~~~g 87 (187)
T PF12830_consen 73 ----HEKHESLVESRYSEG 87 (187)
T ss_pred ----HHHhHHHHHHHHHHH
Confidence 466667777777653
No 144
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.23 E-value=89 Score=39.43 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=80.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh-----hh
Q 000200 329 TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VD 403 (1871)
Q Consensus 329 ~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l-----~~ 403 (1871)
.|...++.-|++|-..|+.-+..+-+.=-..-..|...+++.+.+.+-|.=..||++.-..+|.+.-..|-.. .-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 3334444666666666666666665552222334667788899999999999999999999998654323111 12
Q ss_pred hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 404 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 404 ~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
++..|..||.|-.|.+|...+.||...+..+++...
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 456788899999999999999999999998876543
No 145
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.94 E-value=49 Score=43.04 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred cCCchhHHHHHHHHHHHHh-hCChhH-HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 414 NKVPLVRSLTLNWVTFCIE-TSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~-~~~~~~-~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
.|||.+-.-.+.||.+.+. ..++.+ ...++..+..+++.+++-.+..||..++..|+.+|-.+||
T Consensus 58 Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 58 KKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred ccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 6889999999999999998 333333 2567788889999999999999999999999999999996
No 146
>PF05536 Neurochondrin: Neurochondrin
Probab=59.58 E-value=5.7e+02 Score=34.25 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCC
Q 000200 772 AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP 817 (1871)
Q Consensus 772 N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~ 817 (1871)
++.+...|..++..+....|...+.--...--.++..|-..|....
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~ 197 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH 197 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 6677889999998887777755544221222345566777777553
No 147
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.37 E-value=1.2e+02 Score=39.78 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=105.8
Q ss_pred hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhH-HHHHHH-hcccC
Q 000200 908 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTAL-TDAKL 985 (1871)
Q Consensus 908 Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L-~~~~~ 985 (1871)
-|+|--..++|+..+..-.|.==+-...+++-.+.+++-|..+.||-.|.-||..+-+-.+-++... .+..++ .+. .
T Consensus 104 dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqnD-P 182 (885)
T COG5218 104 DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQND-P 182 (885)
T ss_pred chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-c
Confidence 3677778889999998888876566788899999999999999999999999999987776554433 333333 332 2
Q ss_pred CcchHHHHHHHHH--------------------------HHhccCCCC--cchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 986 GAEGRKDLFDWLS--------------------------KQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 986 ~p~~r~e~l~wL~--------------------------~~l~~~~~~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
+.++|.-++.-+. ++|+.+... .....-+.-+--+|+||.-+||+++..++.
T Consensus 183 S~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 183 SDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred HHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHH
Confidence 4667766654332 122222110 001111111222889999999999999988
Q ss_pred HHHHhcCHHHHHHHhhccCchhHHHHHHHHHhc
Q 000200 1038 EILRAGGQETIEKNLKDIQGPALALILERIKLN 1070 (1871)
Q Consensus 1038 ~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka 1070 (1871)
.-+..--.-.....+..|+-......+..+++.
T Consensus 263 ~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 263 SAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred HHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 776655555555666777755555545555444
No 148
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=59.10 E-value=5.5e+02 Score=33.95 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=83.6
Q ss_pred cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh---HHHHHHHhhcC--CchhHHHHHHHHHHHHh
Q 000200 358 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV---VEDVKTSVKNK--VPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 358 ~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~---~e~i~~al~~K--nP~vk~etl~~L~r~l~ 432 (1871)
..|.+-...++|++|.|+.-.=..||..+.+.|.-+-.. .-+..++ ++.++.-.++. ++.||-=++.|+...+.
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~R-ik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKR-IKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 347788889999999999999999999999999988776 3332222 46666655544 49999999999999998
Q ss_pred hCChhHHHHhhhhhHHHHHhhhCCCCH---HHHHHHHHHHHHHHHHhC
Q 000200 433 TSSKAAVLKVHKDYVPICMECLNDGTP---EVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~---~VR~aA~~~l~~lmk~~G 477 (1871)
..+...- ..++|.+++++..... ++.......+..+.++..
T Consensus 94 Rl~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 8866554 5789999999975443 333334444444455543
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=58.35 E-value=76 Score=40.15 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=41.4
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000200 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
++.|-+|..+++|+...-...++..+ ..++|.++.+|.+++.-|+--|+-|+
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~~~~l----~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLPKEQL----LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-HHHH----HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCCHHHH----HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 78899999999999977666666554 67899999999999999999998775
No 150
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.93 E-value=40 Score=34.15 Aligned_cols=77 Identities=19% Similarity=0.156 Sum_probs=60.5
Q ss_pred hHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHH
Q 000200 1292 TLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWR 1368 (1871)
Q Consensus 1292 vf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k 1368 (1871)
.|.-.+.-+.+...-.|++.|..|.++|++.-..+....+.+...-.++.|-|+=|==+|+++++++-...++.+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 34444555566667789999999999999988334334566789999999999999999999999998777776553
No 151
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.92 E-value=1.4e+02 Score=43.51 Aligned_cols=188 Identities=17% Similarity=0.178 Sum_probs=130.8
Q ss_pred hhhhhccChHHHHHHHHHHHHhhhcCCCC--CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 291 WEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 291 ~~~l~s~KWkeRkEaLe~l~~l~~~pKi~--~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
..++.=+.=+.|.-||++|..+++.---. .+=|......+++++.|-+..|-..+.+.+..+-+++++.-+||.+.++
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li 126 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLI 126 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 33444455577888999999887533322 2348889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhc--------C-----------------CChhhhHHHHHHHhhcCCchhHHHH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-----------------LNLVDVVEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~--------~-----------------~~l~~~~e~i~~al~~KnP~vk~et 423 (1871)
|+.+--.=|-=..|-.|+.+.....+... | -++++..-.-.+.++.|.+.+..+.
T Consensus 127 ~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ss 206 (1312)
T KOG0803|consen 127 PPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSS 206 (1312)
T ss_pred hhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHH
Confidence 99987766666666555555443222110 1 1122222222356678889999999
Q ss_pred HHHHHHHHhhCChh-HHH---Hhhhhh--HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 424 LNWVTFCIETSSKA-AVL---KVHKDY--VPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 424 l~~L~r~l~~~~~~-~~~---~~~k~~--~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
+.-+.+.+...... .+. .-.|.+ ...+-+.+.+..|.||.+..+++-.+.+-+=.
T Consensus 207 Ll~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 207 LLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 99888888543221 111 111222 23466889999999999999998887765443
No 152
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=56.50 E-value=11 Score=32.56 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.5
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000200 444 KDYVPICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
..+...+.+.+.|+++.||+||.+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35778899999999999999998764
No 153
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=55.71 E-value=95 Score=32.99 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=75.4
Q ss_pred CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC
Q 000200 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1871)
Q Consensus 320 ~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~ 399 (1871)
|.++.+++..+-..+.. |..-+...+.++..+.+-+.. |.+.- ...+++..+.+++...+..++..
T Consensus 21 P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~~~~------~~~~r~~~l~~~l~~~~~~i~~~--- 86 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----FRRSS------LSQERRRELKDALRSNSPDILEI--- 86 (148)
T ss_dssp TTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----SHCCH------SHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----hhchh------hhHHHHHHHHHHHHHHHHHHHHH---
Confidence 44455666666666654 466666777777777777654 21111 11234455555555555544432
Q ss_pred ChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000200 400 NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 400 ~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
+..+.....+. ++.+...++.-+..++.-.+...+. -..+++.++..+ ++++.|++|++||
T Consensus 87 -----l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 87 -----LSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp -----HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred -----HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 22233222222 3788888888888888755544332 134889999999 5566699999986
No 154
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=55.62 E-value=78 Score=42.39 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC
Q 000200 322 DFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 399 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~ 399 (1871)
+-.++++-|.+++. +-|+..-.+.-..+..+--|. -+..++++++..-|+=... + | .
T Consensus 270 eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~------a~~~~ltpl~k~~k~ld~~--e-----------y-q- 328 (690)
T KOG1243|consen 270 EKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD------AASDFLTPLFKLGKDLDEE--E-----------Y-Q- 328 (690)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc------cchhhhhHHHHhhhhcccc--c-----------c-c-
Confidence 45666777777665 444444444444444333332 3445566666555443321 0 1 1
Q ss_pred ChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChh
Q 000200 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 400 ~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
..+++-|+.-++.---++|.-.|..+-..+...++..++ +.+.|.+..++.|+++.+|+....+|..+.-.+|++
T Consensus 329 --~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 329 --VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred --cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 135666777777777899999999999888887776653 678999999999999999999999999999999998
Q ss_pred HHH
Q 000200 480 PLE 482 (1871)
Q Consensus 480 ~l~ 482 (1871)
.++
T Consensus 404 ~Ln 406 (690)
T KOG1243|consen 404 NLN 406 (690)
T ss_pred hhc
Confidence 543
No 155
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=54.82 E-value=26 Score=39.32 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhh----cCChhhHHHHHHHHHHHHH-HhccC-ccchHhHHHHHhhhcCCC
Q 000200 697 KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD----HKNPKVLSEGILWMVSAVE-DFGVS-HLKLKDLIDFCKDTGLQS 770 (1871)
Q Consensus 697 K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~----~KnPKv~~e~l~wl~~ai~-eFG~~-~~~~K~li~~~k~~~l~~ 770 (1871)
.+|......+..|.+.-|...+++-+...... ......+.+|+.++..+++ ..|.. ++.-...+..+..+ |.+
T Consensus 91 ~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~-L~s 169 (187)
T PF06371_consen 91 SLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALS-LDS 169 (187)
T ss_dssp HHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---T
T ss_pred HhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHH-HCC
Confidence 34566667788888888887777766554322 2446789999999988877 66754 34556777777775 999
Q ss_pred ccHHHHHHHHHHHHHH
Q 000200 771 SAAATRNATIKLLGAL 786 (1871)
Q Consensus 771 sN~~VR~aAi~Ll~~l 786 (1871)
+|+.+|..++.+|..+
T Consensus 170 ~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 170 PNIKTRKLALEILAAL 185 (187)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999876
No 156
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=54.26 E-value=37 Score=43.11 Aligned_cols=147 Identities=16% Similarity=0.247 Sum_probs=83.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH--------------hcCCCccchHHHHHHHHHHHHHHHHhcC
Q 000200 610 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC--------------MLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1871)
Q Consensus 610 L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~--------------~~PgwkesNfqV~~~~leil~~la~~~~ 675 (1871)
++|-.=|.|..|+--+...++..+. -++.-|+. ..-|.||+||....-.|++...+.+...
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~-----~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk 79 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEK-----KVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK 79 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhh-----hhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH
Confidence 4455567788887777665555321 11222221 0126799999988888888887776432
Q ss_pred CCCccchhhhccchhhccccchhh----------hHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000200 676 KFPKKCVVLCLLGISERVADIKTR----------AHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1871)
Q Consensus 676 ~fs~~~~~~~l~~lveKlgD~K~r----------~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~a 745 (1871)
.|- ...+-+||.-.- -.+..+|+.+-|+ .-+|.+.-.|+.+++..
T Consensus 80 ~fl---------s~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~----------------e~~~~~~tq~~kcla~l 134 (728)
T KOG4535|consen 80 QFL---------SVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVA----------------ESSSQTVTQIIKCLANL 134 (728)
T ss_pred HHH---------HHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHH----------------hcCchhHHHHHHHHHHH
Confidence 220 001122332110 1122333333333 33445555566666666
Q ss_pred HHHhccCccchH---hHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000200 746 VEDFGVSHLKLK---DLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1871)
Q Consensus 746 i~eFG~~~~~~K---~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly 787 (1871)
+..--+..+.+. .+..++|+. +.|++|+||-++..+++.+-
T Consensus 135 v~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 135 VSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHH
Confidence 665555544443 455568998 99999999999999988764
No 157
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=54.20 E-value=18 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 445 DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 445 ~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
..+|.|+++|.+.+++||+.|+.+|+-|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999998774
No 158
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.52 E-value=1.4e+02 Score=36.39 Aligned_cols=137 Identities=12% Similarity=0.205 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc----cccc--hhhhHHHHHHHhc--------cCCHHHHHHHH
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FSGS--SRFLLPVLLEKLK--------EKKPTVAESLT 387 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~----F~~y--~~~~~~~lLeklK--------EKK~~V~eAl~ 387 (1871)
...=++..+=.++.|....+-..+++|+..|...+... |.++ ...+...+...+- +.-..+..++-
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 45567777788888999999999999999999988643 3444 7777888888887 88899999999
Q ss_pred HHHHHHHHhc--------CCChhhhHHH-HHHHhh--cC--CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh
Q 000200 388 QTLQAMHKAG--------CLNLVDVVED-VKTSVK--NK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 454 (1871)
Q Consensus 388 ~aLda~~~~~--------~~~l~~~~e~-i~~al~--~K--nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l 454 (1871)
.||..++... ...+++++-+ |+..+. .+ +|.++.-.+..+..++....... .+.++.++|.+...+
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~-~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISS-VKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHh
Confidence 9999986530 1235566544 777665 33 68888888888888888766544 356688999999988
Q ss_pred CCCCH
Q 000200 455 NDGTP 459 (1871)
Q Consensus 455 ~Ds~~ 459 (1871)
.+.+.
T Consensus 275 ~npf~ 279 (282)
T PF10521_consen 275 ENPFG 279 (282)
T ss_pred cCCCc
Confidence 88763
No 159
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.02 E-value=1.3e+02 Score=34.22 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=83.3
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
..+++.||+..-.....|+.++.+.+..+..+|-+++..++..+..-..+.||.+|..+..-+....++++.-...++.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~ 86 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE 86 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45688899999999999999999999999999888999999999988889999999999999998888775443333322
Q ss_pred hhHH---HHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 445 DYVP---ICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 445 ~~~~---~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
.+-- .-..+-.|.....+......++.+..+++
T Consensus 87 gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 87 GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2111 12223344444333335666666666666
No 160
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=52.83 E-value=42 Score=35.31 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=59.7
Q ss_pred cchHHHHHhhhc-cCChhhHhHHHHHHHHHHHhhcCcccCccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHh-c---
Q 000200 1290 TKTLPYILEGLR-SKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKIL-G--- 1363 (1871)
Q Consensus 1290 skvf~~l~~glk-sKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ia~~i~drD~~VR~AALn~l~~~y~~~-G--- 1363 (1871)
.++.|++.+|++ +++.-.|+.|.-.++.+-.+.-++- .-..+ ++.|++.....+. .+.||.||+..|... +
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-EVLNALMESILKNWTQETV--QRQALICLIVLCQSQENVDS 81 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccccccc
Confidence 468899999999 9999999999999999987776642 11123 2566666554444 577999999998776 3
Q ss_pred --hhHHHHhccCCH
Q 000200 1364 --EDIWRYVGKLTD 1375 (1871)
Q Consensus 1364 --d~v~k~~g~ls~ 1375 (1871)
+++++.+-+++.
T Consensus 82 lp~~~~~~l~~~~~ 95 (121)
T PF12397_consen 82 LPRKVFKALLKLPD 95 (121)
T ss_pred CCHHHHHHHHcCcc
Confidence 236666666554
No 161
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.66 E-value=38 Score=42.59 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhH-Hhhh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV-EKSS 934 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~-~k~~ 934 (1871)
.+++.+++--|=|+|++||..+..++.. ++-+--+-+-+|+.-+..++.|--..+-.-..+.+.-+...+++.- +.+.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 4788999999999999999999999974 5555554457888888999988888887777788888788887765 6777
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
..+++-+.......-+.+|.-+...++-.++.++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 7777777777777778888877777777777765
No 162
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=52.53 E-value=1e+02 Score=40.25 Aligned_cols=88 Identities=19% Similarity=0.335 Sum_probs=63.0
Q ss_pred CChhhHHHHHHHHHHHHhhcc-hhhHHHHH----HHHhhccCc----------------hhHHHHHHHHHHHHHhhCCC-
Q 000200 105 GRPKTVEKAQAVFMLWVELEA-VDVFLDVM----EKAIKNKVA----------------KAVVPAIDVMFQALSEFGAK- 162 (1871)
Q Consensus 105 ~r~~tk~~a~e~~l~~vE~e~-~~~v~e~l----l~~~~~K~P----------------Kvvaaai~~l~~~l~~FG~~- 162 (1871)
-.|.-|++|.|.++.|||=.. ++..++.| ..|=..|+| =|.++|+.+ |..||..
T Consensus 443 ~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~a----Lskf~ln~ 518 (898)
T COG5240 443 NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQA----LSKFALNI 518 (898)
T ss_pred hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHH----HHHhccCc
Confidence 368899999999999998533 34444433 233344555 245555554 5789985
Q ss_pred --ccChhHHHhhchhhhcccChhHHHHHHHHHHHHH
Q 000200 163 --IIPPKRILKMLPELFDHQDQNVRASSKGLTLELC 196 (1871)
Q Consensus 163 --vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely 196 (1871)
++.+..+.-.|+..++++|-.||+-|.-++-.|-
T Consensus 519 ~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 519 SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 4568889999999999999999999987765443
No 163
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.97 E-value=89 Score=45.28 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=94.0
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh
Q 000200 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 928 (1871)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~ 928 (1871)
|+++. +..+++++..+|=+++.-||.++-+++++.|--.--+.++....-.++-..|-+.-|-.++-+++..+-+++++
T Consensus 38 ~~dse-l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 38 ELDSE-LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred ccCHH-HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 34443 34567899999999999999999999975443322233566777778888999999999999999999999999
Q ss_pred hHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHH
Q 000200 929 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA 965 (1871)
Q Consensus 929 ~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~ 965 (1871)
...+|.|.++|.++...-|--..|-.+|-+.....+.
T Consensus 117 ~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 117 KLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 9999999999999999999888887777776654443
No 164
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=51.71 E-value=79 Score=35.34 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=53.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLR 357 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr 357 (1871)
-...-+.++.+..|-.++-=+..++.+ +.+--..|+..++.|-++|+ +....+...|+.++..|-.-++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344556788899999998888776654 34444678999999999998 7778888899999888877665
No 165
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=3.8e+02 Score=33.61 Aligned_cols=195 Identities=11% Similarity=0.151 Sum_probs=117.8
Q ss_pred CCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhc----CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 000200 276 VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST----KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGN 351 (1871)
Q Consensus 276 ~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~----pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~ 351 (1871)
..+.+++..+| .+.-.-.+..=.+|-++|+.|..++.+ ..|.+ .|-+...|. .+.+++-.|-..|+.+|+.
T Consensus 76 ~~~~~~~~~~~--~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt 150 (342)
T KOG2160|consen 76 KVISDVMSMIP--IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLG-YLENSDAELRELAARVIGT 150 (342)
T ss_pred hhHHHHHHhhh--hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHH-HhcCCcHHHHHHHHHHHHH
Confidence 34455555533 333334567788888999999887643 33333 334555555 8889999999999999998
Q ss_pred HHHHhccc----cccchhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChhhh-----HHHHHHHhhc--CCchh
Q 000200 352 LARGLRTH----FSGSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDV-----VEDVKTSVKN--KVPLV 419 (1871)
Q Consensus 352 lA~gLr~~----F~~y~~~~~~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~~l~~~-----~e~i~~al~~--KnP~v 419 (1871)
.+.-=-+- +.. ..+..++..|. |.--.|+..+.-|+.++....--....+ ...+..+|+. ..+..
T Consensus 151 ~~qNNP~~Qe~v~E~---~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~l 227 (342)
T KOG2160|consen 151 AVQNNPKSQEQVIEL---GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKL 227 (342)
T ss_pred HHhcCHHHHHHHHHc---ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHH
Confidence 87653211 111 14556666665 4444455666666666665411111111 2556788887 56888
Q ss_pred HHHHHHHHHHHHhhCChhHHHHhhhh--hHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 420 RSLTLNWVTFCIETSSKAAVLKVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 420 k~etl~~L~r~l~~~~~~~~~~~~k~--~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
|.-++.++...++......- +.+. +.-.+.....--+.++++++..++-.+...+-.+.
T Consensus 228 krK~~~Ll~~Ll~~~~s~~d--~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 228 KRKALFLLSLLLQEDKSDED--IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhh--HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 88899999988876432211 1111 12223344444567889998888888887766444
No 166
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.38 E-value=1e+02 Score=43.51 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=77.4
Q ss_pred HHHHH-HHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCC
Q 000200 380 PTVAE-SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 458 (1871)
Q Consensus 380 ~~V~e-Al~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~ 458 (1871)
+.||- ++..+-|-.+.+ ..-++.+.+.+..-|..-+|+||..++.-|+..+-+. ..+ +|..++-++.|+.|.+
T Consensus 975 p~IRsN~VvalgDlav~f-pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDLAVRF-PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPN 1048 (1251)
T ss_pred ceeeecchheccchhhhc-ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCc
Confidence 34443 444555655555 3446667788888889999999999999998887532 112 2678889999999999
Q ss_pred HHHHHHHHH--------------HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000200 459 PEVRDAAFS--------------VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1871)
Q Consensus 459 ~~VR~aA~~--------------~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1871)
++||+-|.. .|.-|+-++|.. .|+..+-+.|.+++=|
T Consensus 1049 ~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~-------~l~~~~~~~vm~~li~ 1099 (1251)
T KOG0414|consen 1049 AEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG-------NLEEESYKTVMEFLIG 1099 (1251)
T ss_pred HHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC-------cccchhhHHHHHHHHH
Confidence 999999984 444455555543 5677777777777754
No 167
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=2.6e+02 Score=38.47 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHHhccCCH-HHHHHHHHHHHHHHHhc--
Q 000200 323 FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEKLKEKKP-TVAESLTQTLQAMHKAG-- 397 (1871)
Q Consensus 323 y~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~-~~~~~lLeklKEKK~-~V~eAl~~aLda~~~~~-- 397 (1871)
...++.+|.+++. ..|.-++.+|++|+..|+..+....+--+. ..+|.+++||-.=-- -|.|...+||.-+-..+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 5679999999999 999999999999999999999877654433 478888888754221 23344444444443321
Q ss_pred -C---CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 398 -C---LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 398 -~---~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
| -.|.+++. +++==.=.+..-++.-.+.|-++.++..+ ..+-..+|.|..+|.-.+.-+=+..+-|+..+.
T Consensus 289 AiL~AG~l~a~Ls----ylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 289 AILQAGALSAVLS----YLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 0 01222221 11100001111222233333333333222 223455677777777666667777777766655
Q ss_pred HHh
Q 000200 474 KSV 476 (1871)
Q Consensus 474 k~~ 476 (1871)
--+
T Consensus 364 d~f 366 (1051)
T KOG0168|consen 364 DGF 366 (1051)
T ss_pred Hhc
Confidence 443
No 168
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=48.92 E-value=14 Score=31.82 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHH
Q 000200 936 GVLSDILKCLGDNKKHMRECTLTVL 960 (1871)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~al 960 (1871)
.+...|..+|.|+++.||+||++.+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5677888999999999999998764
No 169
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=48.49 E-value=1.5e+02 Score=37.32 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred HHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC---h----hhhHHHHHHHhhcCC-chhHHH
Q 000200 351 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---L----VDVVEDVKTSVKNKV-PLVRSL 422 (1871)
Q Consensus 351 ~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~---l----~~~~e~i~~al~~Kn-P~vk~e 422 (1871)
.+|..++..| .-.+.++-.|..|+.-+-++|+--+..-||+++.. |-+ + -++..++...+.+|. |.|+.-
T Consensus 31 DvCD~v~~~~-~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N-Cg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k 108 (462)
T KOG2199|consen 31 DVCDKVGSDP-DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN-CGKRFRLEVSSRDFTTELRALIESKAHPKVCEK 108 (462)
T ss_pred HHHHhhcCCC-cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-cchHHHHHHhhhhHHHHHHHHHhhcccHHHHHH
Confidence 3455666666 67888999999999999999999999999999987 843 2 255566666666444 899887
Q ss_pred HHHHHHHHHhhCChhHHHHhhhhhHHHHHh----hhCCCCHHHHHHHHH
Q 000200 423 TLNWVTFCIETSSKAAVLKVHKDYVPICME----CLNDGTPEVRDAAFS 467 (1871)
Q Consensus 423 tl~~L~r~l~~~~~~~~~~~~k~~~~~l~k----~l~Ds~~~VR~aA~~ 467 (1871)
.-..+..+.+.+.+..-..++..++.-+.+ .+.+.+.....+...
T Consensus 109 ~~~lv~eWsee~K~Dp~lsLi~~l~~klk~~g~~f~~~~~k~~k~a~~~ 157 (462)
T KOG2199|consen 109 MRDLVKEWSEEFKKDPSLSLISALYKKLKEEGITFLVAGSKPEKHAMST 157 (462)
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHcCCCcccCCCchhHHHhhc
Confidence 777777777655544433333333333332 334455544444443
No 170
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=47.71 E-value=3.1e+02 Score=32.62 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=49.2
Q ss_pred hccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh
Q 000200 334 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 413 (1871)
Q Consensus 334 l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~ 413 (1871)
+.|.|..|+-.+++|.+.+ +|.+|+... .. ..+=+.|- .+..+-+.|+.-+.
T Consensus 2 l~d~d~~v~K~~I~~~~~i---------------y~~~~~~i~-~~-------~~~~~~W~-----~~~~lK~~Il~~~~ 53 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSI---------------YPLVFRWIC-VN-------PSDEQLWE-----SMNELKDRILSLWD 53 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHH---------------HHHHHHHHS----------HHHHHHHH-----HHHHHHHHHHHGGG
T ss_pred CCCCcHHHHHHHHHHHHHH---------------HHHHHHHHc-CC-------chHHHHHH-----HHHHHHHHHHHHhc
Confidence 5688999999999988754 344444441 11 11222232 24566788888899
Q ss_pred cCCchhHHHHHHHHHHHHhh
Q 000200 414 NKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~ 433 (1871)
+.||.+|..+++|+.+++-.
T Consensus 54 ~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 54 SENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp SSSHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHh
Confidence 99999999999999999854
No 171
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.53 E-value=1.1e+02 Score=45.05 Aligned_cols=224 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCC-CCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCC
Q 000200 189 KGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 267 (1871)
Q Consensus 189 ~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~-~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1871)
.-++-|.|+|+-.. +...=-++++-+|++.....+.++.+. ..|+|.+-+..-.+. -. .|+
T Consensus 23 p~~~~e~l~~l~~~-l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl-----~~-~gd----------- 84 (2067)
T KOG1822|consen 23 PVFCLEWLRYLERN-LNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIARL-----IS-NGD----------- 84 (2067)
T ss_pred cHHHHHHHHHHHhc-CCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHHH-----Hh-ccc-----------
Confidence 34566777776532 222224789999999999999998755 578875432221110 01 011
Q ss_pred CCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHH
Q 000200 268 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 346 (1871)
Q Consensus 268 ~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~ 346 (1871)
.++-|+++. .. .+|...-.-+.-+....++.-+..... --+-..-.|.|.++.+.+...-.-..+.....
T Consensus 85 -~f~~~~~l~------~c--~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~ 155 (2067)
T KOG1822|consen 85 -SFSLYSRLN------SC--NDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIM 155 (2067)
T ss_pred -hhhHHHHHH------Hh--hhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122232222 22 234432222445555556555554332 22222334899999999999877777888888
Q ss_pred HHHHHHHHHhc--cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHH
Q 000200 347 QAIGNLARGLR--THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTL 424 (1871)
Q Consensus 347 ~~i~~lA~gLr--~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl 424 (1871)
..+....+||+ ..-.-|.+.+.-..--.+-|+--+|+.|...|+-++...+...+ +
T Consensus 156 ~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~------------------~---- 213 (2067)
T KOG1822|consen 156 ITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLGGPGL------------------G---- 213 (2067)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhcCccc------------------c----
Confidence 88999999998 33333444444444445556666677777777777765422111 1
Q ss_pred HHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000200 425 NWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 425 ~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~ 476 (1871)
.+. +..+...+.+.+++++-+||.+=+++++.+.-.-
T Consensus 214 -----------~Se----le~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 214 -----------TSE----LETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred -----------chh----hhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 011 1444567788889999999999999888877543
No 172
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=45.30 E-value=2.1e+02 Score=32.45 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=76.9
Q ss_pred cchhhhHHHHHHHhccCCH------------------HHHHHHHHHHHHHHHh--cCCChhhhHHHHHHHhhcCCchhHH
Q 000200 362 GSSRFLLPVLLEKLKEKKP------------------TVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRS 421 (1871)
Q Consensus 362 ~y~~~~~~~lLeklKEKK~------------------~V~eAl~~aLda~~~~--~~~~l~~~~e~i~~al~~KnP~vk~ 421 (1871)
++...++|.++..++-++. .+|-++-+||.++... +.+.+.++++.|..++++ .+.+|.
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~ 83 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKM 83 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHH
Confidence 5667788888888887774 6788999999999887 235577888999999999 999999
Q ss_pred HHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHH
Q 000200 422 LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 499 (1871)
Q Consensus 422 etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~ 499 (1871)
-+..-|.|.....|.... .-+..+++++-+.| -+-+.+.+...-+++.++..|.-++-.
T Consensus 84 L~~~~l~kl~~~~p~~v~-~~Ld~l~~~l~~~L------------------~~k~k~~AvkQE~Ek~~E~~rs~lr~~ 142 (169)
T PF08623_consen 84 LCHLMLSKLAQLAPEEVL-QRLDSLVEPLRKTL------------------SKKLKENAVKQEIEKQQELIRSVLRAV 142 (169)
T ss_dssp HHHHHHHHHHHS-HHHHH-HCCTTTHHHHHHHH------------------H----TTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHh------------------hccCCCCcccccHHHHHHHHHHHHHHH
Confidence 999999999876544433 22455555554443 233445555555555555555554443
No 173
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.16 E-value=1.6e+02 Score=42.66 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=78.0
Q ss_pred HhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc--CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 355 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 355 gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~--~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
+....|.+....++.-||--++|-+.+||.-+..||..++..- .....++.+.|-.-+.+-..+||..++..+.|.+-
T Consensus 805 a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 805 AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 3445566666666777888889999999999999999998751 12344556666666666677888888888888776
Q ss_pred hCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000200 433 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1871)
Q Consensus 433 ~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1871)
..+. ....+-..+.....|+...||+.+..-+--
T Consensus 885 ~~~e-----~~~qyY~~i~erIlDtgvsVRKRvIKIlrd 918 (1692)
T KOG1020|consen 885 SIPE-----LIFQYYDQIIERILDTGVSVRKRVIKILRD 918 (1692)
T ss_pred ccHH-----HHHHHHHHHHhhcCCCchhHHHHHHHHHHH
Confidence 4422 124455667777788888888877654443
No 174
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.03 E-value=1.8e+02 Score=32.49 Aligned_cols=146 Identities=11% Similarity=0.171 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH--hccCCHHHHHHHHHHHHHHHHhc
Q 000200 321 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK--LKEKKPTVAESLTQTLQAMHKAG 397 (1871)
Q Consensus 321 ~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLek--lKEKK~~V~eAl~~aLda~~~~~ 397 (1871)
.+|-+|...|-.+|. +.+..+-..+++++|.|.- -.||..-.+..-.+. -.+......+... -+...
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l----~~~~~- 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISL----PMMGI- 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHH----hhccC-
Confidence 479999999999998 8889999999999998863 244433221111110 0111111111111 01010
Q ss_pred CCChhhhHHH-----HHHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000200 398 CLNLVDVVED-----VKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1871)
Q Consensus 398 ~~~l~~~~e~-----i~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1871)
..+.+|.... +...|+++. ..-...+..=+...|+.....+ ..++..++|.++..+...++..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1123333222 222222222 2222333334444444433333 45678899999999999999999999999999
Q ss_pred HHHHhC
Q 000200 472 IAKSVG 477 (1871)
Q Consensus 472 lmk~~G 477 (1871)
|+.+++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 998875
No 175
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.38 E-value=1.6e+02 Score=32.98 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC-CHHHHHHHHHHHHHHHHHhCh
Q 000200 401 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 401 l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds-~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
+..+...|...+.+++|..|-..+..+.-.++..+...+......++..+++.|+.. .+.+++++..++..|+..++.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445667788899999999997777777777777766666555578888899888664 456799999999999988773
No 176
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.27 E-value=1.7e+02 Score=41.59 Aligned_cols=66 Identities=21% Similarity=0.113 Sum_probs=50.4
Q ss_pred CCcchHHHHHHHHHHHhccCCCCc-chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Q 000200 985 LGAEGRKDLFDWLSKQLTGLSGFP-DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1050 (1871)
Q Consensus 985 ~~p~~r~e~l~wL~~~l~~~~~~~-~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~ 1050 (1871)
.||..|..+|.-..+-+.....+. -....+.-++.+|+||+.-||++|-.++..++.+-.+-....
T Consensus 371 vsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~ 437 (1251)
T KOG0414|consen 371 VSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELR 437 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 478899999998776444333332 245566678899999999999999999999888887776654
No 177
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.82 E-value=82 Score=44.26 Aligned_cols=153 Identities=18% Similarity=0.250 Sum_probs=102.5
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCC--ccchHHHHHHHHHHH
Q 000200 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVI 667 (1871)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~Pgw--kesNfqV~~~~leil 667 (1871)
..|++++.+.+++..=++-..++-.-.-|...+++|-.|++..++.-- .+..+||+ || .|.|.+|-+.++.+|
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl-~dsYLKYi----GWtLsDk~~~VRl~~lkaL 350 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL-SDSYLKYI----GWTLSDKNGTVRLRCLKAL 350 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh-cchHHHHh----cceeecCccHHHHHHHHHH
Confidence 457888888888888888999999999999999999999999554311 23345554 89 799999999999999
Q ss_pred HHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000200 668 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1871)
Q Consensus 668 ~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~ 747 (1871)
..|.++. .+.+++.. |.+.++ .++++.+-.--|+-|++..|.-+....
T Consensus 351 ~~L~e~~-------------~~~~~L~l-------------FtsRFK-----~RIVeMadrd~~~~Vrav~L~~~~~~~- 398 (1048)
T KOG2011|consen 351 IKLYEKD-------------EDKDKLEL-------------FTSRFK-----DRIVEMADRDRNVSVRAVGLVLCLLLS- 398 (1048)
T ss_pred HHHHhcc-------------ccchHHHH-------------HHHHHH-----HHHHHHHhhhcchhHHHHHHHHHHHHh-
Confidence 9998861 11222222 222221 123333223446666766665544332
Q ss_pred HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 748 DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 748 eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
.-|+ ++-+++..... + +=+.|+.||-+|...+
T Consensus 399 ~~g~--L~d~di~~Vy~-L-i~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 399 SSGL--LSDKDILIVYS-L-IYDSNRRVAVAAGEFL 430 (1048)
T ss_pred cccc--cChhHHHHHHH-H-HhccCcchHHHHHHHH
Confidence 2332 55566655544 3 7788999999997766
No 178
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=42.56 E-value=2.9e+02 Score=33.25 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred hhhhccChHHHHHHHHHHHHhhhcCCCCC--CChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 292 EGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 292 ~~l~s~KWkeRkEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
+.+.++.=+.|..||..|..+..+..-.. ..| +...+..++. ..|-.+...+++.+..|. +-.++..-....+
T Consensus 61 ~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i 136 (254)
T PF04826_consen 61 SLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYI 136 (254)
T ss_pred HHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhH
Confidence 34566677888889999988754322111 235 5566666666 567778788999999986 3333333355567
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh-----hHHHHHHHhhcC-CchhHHHHHHHHHHHHhhC--------
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-----VVEDVKTSVKNK-VPLVRSLTLNWVTFCIETS-------- 434 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~-----~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~-------- 434 (1871)
|.++.-+-.-...++..+..+|-.+... ..-..+ ++..+..-++.. .-.+-..++.|+.+.-...
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~ 215 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV 215 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec
Confidence 7777777776667777777777766543 100111 223344444544 3466667777777654322
Q ss_pred ----ChhHHHH---hhhhhHHHHHhhhCCCCHHHHHH
Q 000200 435 ----SKAAVLK---VHKDYVPICMECLNDGTPEVRDA 464 (1871)
Q Consensus 435 ----~~~~~~~---~~k~~~~~l~k~l~Ds~~~VR~a 464 (1871)
+..++.. -.+.+..-+..+.++.+++||+.
T Consensus 216 ~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 216 QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 2222221 12457777778889999999974
No 179
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=42.15 E-value=4.6e+02 Score=35.10 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-CCChh
Q 000200 324 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLV 402 (1871)
Q Consensus 324 ~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~-~~~l~ 402 (1871)
.+-+.++-.++.|-.+.|-..|++-|-.||+.=. .|+.-+.-.|..-|..--+..++++.++|..++... -.+|.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~ 133 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT 133 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4667888889999999999999999999998732 356666666666777888889999999999999861 12234
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHH--Hhh-hhhHHHHHhhhCC
Q 000200 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL--KVH-KDYVPICMECLND 456 (1871)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~--~~~-k~~~~~l~k~l~D 456 (1871)
.+...|... ..-...+|..++.||...+...+...+. +.. .-++..+-+.|.|
T Consensus 134 ~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 134 GLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 444444321 2456789999999999888765544333 222 3356667788887
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.29 E-value=3.3e+02 Score=37.64 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=100.1
Q ss_pred HHHHHh---ccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhH
Q 000200 329 TLKKLI---TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 405 (1871)
Q Consensus 329 ~Lkk~l---~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~ 405 (1871)
-+.+.| .|--+.+-.-|+..+..+++.=-+.=--.--.++...++-+||.-+-|-=.+...+-.++. +-.++++
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce---vy~e~il 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE---VYPEDIL 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH---hcchhhH
Confidence 344444 4999999999999999988853221112244678889999999999988777776666655 2357888
Q ss_pred HHHHHHhh---cCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 406 EDVKTSVK---NKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 406 e~i~~al~---~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+++.+.-. +|+ |.-|.-.=.-+.+.+...+.-. .+....++..++++++|++..-|-.++..+|-++.+..
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 98887433 233 3333323334444444443322 24446788999999999999999999999999998865
No 181
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=41.06 E-value=3.1e+02 Score=37.80 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=96.7
Q ss_pred HHHhhhcC-CCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHh--ccccccchh--hhHHHHHHHhccCCHHH
Q 000200 309 LTKLASTK-RIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGL--RTHFSGSSR--FLLPVLLEKLKEKKPTV 382 (1871)
Q Consensus 309 l~~l~~~p-Ki~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gL--r~~F~~y~~--~~~~~lLeklKEKK~~V 382 (1871)
+..+..++ ..+ ..+.+.+.-|.+++. ..+-- ..+.|+|.||.=- .-+|..+.. .++|-|-+.++.....
T Consensus 474 IRNiS~h~~~~k-~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~- 548 (708)
T PF05804_consen 474 IRNISQHDGPLK-ELFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE- 548 (708)
T ss_pred HHHHHhcCchHH-HHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC-
Confidence 34566555 322 346677777777776 33544 4555555555543 235666653 6788888888766441
Q ss_pred HHHHHHHHH---HHHHh-cCCC-h--hhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhhCC-hhHHHHhhhhhHHHHHh
Q 000200 383 AESLTQTLQ---AMHKA-GCLN-L--VDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICME 452 (1871)
Q Consensus 383 ~eAl~~aLd---a~~~~-~~~~-l--~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~~-~~~~~~~~k~~~~~l~k 452 (1871)
=+-+.+++- +++.. .|-. + ..+++.+.+.|+.|. -.+=.|++-.+.+.+.+.. +..+.+- ..+...++.
T Consensus 549 dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylid 627 (708)
T PF05804_consen 549 DDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLID 627 (708)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHH
Confidence 122222222 21111 0100 1 145677777777666 4555577777777776432 2222221 347788999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 453 CLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 453 ~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
++.|++++||+-|-.||..++-+=.
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 9999999999999999999886643
No 182
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=40.59 E-value=3.5e+02 Score=34.30 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhH-HHHHHHhc-----
Q 000200 909 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP-YVTTALTD----- 982 (1871)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~-~i~~~L~~----- 982 (1871)
++++...++++..+..=-..-+..++...+|.++..+-+.-+.+|+.|+..+..+...+|-+..+. .+.+.+..
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 567888899998888888888888888889999999999999999999999998887776433332 12222211
Q ss_pred ---------------ccCCcchHHHHHHHHHHHhccC--CCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 983 ---------------AKLGAEGRKDLFDWLSKQLTGL--SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 983 ---------------~~~~p~~r~e~l~wL~~~l~~~--~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.+.+.-.=-++|.++..-|... ......+.++...=.|.++.++.||..|..+=..++-
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 1011112235677766555432 2234467777777779999999999999988776666
No 183
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=40.40 E-value=5.6e+02 Score=28.51 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCH-HHHHHHHHHHHHHH
Q 000200 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKP-TVAESLTQTLQAMH 394 (1871)
Q Consensus 316 pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~-~V~eAl~~aLda~~ 394 (1871)
.|+.++++..++..|.+...+.|.......+++|-.-|.... .|.++ ...++..+....+ .++..+.+.+...+
T Consensus 9 nklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~----~a~l~~~l~~~~~~~f~~~ll~~~~~~f 83 (209)
T PF02854_consen 9 NKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPL----YARLCAALNSRFPSEFRSLLLNRCQEEF 83 (209)
T ss_dssp HHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHH----HHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 356688999999999999885488888888888877666655 34333 3334444444444 66666666655555
Q ss_pred HhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHHHhhhhhHHHHHhhhCCCC-HHHHHHHHHHHHH
Q 000200 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGT-PEVRDAAFSVLAA 471 (1871)
Q Consensus 395 ~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~-~~VR~aA~~~l~~ 471 (1871)
.... ...-.+......-+-+...+.|++..+... +...+ -.++-.++....+.. +.--+...+++.+
T Consensus 84 ~~~~------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i----~~~l~~ll~~~~~~~~~~~~~~~ie~~~~ 153 (209)
T PF02854_consen 84 EERY------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKII----FDILRELLSDGTDECQPPPDEENIECLCT 153 (209)
T ss_dssp HHHT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH----HHHHHHHHHHTSHHCCHHTCHHHHHHHHH
T ss_pred HHhh------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhH----HHHHHHHHhcccccccCCCcHhHHHHHHH
Confidence 4311 111222333444455667888999888643 22222 223333333333211 4556677889999
Q ss_pred HHHHhChh
Q 000200 472 IAKSVGMR 479 (1871)
Q Consensus 472 lmk~~Ge~ 479 (1871)
+++.+|..
T Consensus 154 lL~~~G~~ 161 (209)
T PF02854_consen 154 LLKTCGKK 161 (209)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999965
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.97 E-value=50 Score=35.11 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHhhhhcCChhhHHHHHHHHHHHHHHhc--cCc---cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000200 721 RLYKIMKDHKNPKVLSEGILWMVSAVEDFG--VSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 721 ~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG--~~~---~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
.|...+....+|.+++-+|.=|++.++.+- ..+ +..|..|- .+ +.|.|+.||-.|+.++..+
T Consensus 47 ~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM---~L-m~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 47 KLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVM---EL-MNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHH---HH-TS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHH---HH-hcCCCHHHHHHHHHHHHHH
Confidence 333443344477777777777777776442 221 22344443 35 8999999999998877544
No 185
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.56 E-value=5.4e+02 Score=35.09 Aligned_cols=372 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred chHHHHhhhccchhHhHHHHHHHHHHHHHHh-cChhHHhhhhhhhHHHHHHh---ccCchhHHHHHHHHH--------HH
Q 000200 895 ELFGGLRGRLYDSNKNLVMATLITLGAVASA-MGPAVEKSSKGVLSDILKCL---GDNKKHMRECTLTVL--------DA 962 (1871)
Q Consensus 895 eL~~aLk~rl~DsNk~lv~~al~ii~~lA~a-mG~~~~k~~k~l~~~il~~l---~D~K~~vR~aa~~al--------da 962 (1871)
|+...|+.++..-++.+-..++..+...+.+ || .+...+.-+.... ++.+.--.+...+.+ ..
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr-----~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~ 264 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQGSMR-----DAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFD 264 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-----HHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHHHHHH
Q ss_pred HHHhccchhhhH--HHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 963 WLAAVHLDKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 963 ~~~~~gl~~~~~--~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
+.+.++-...-. .+..-|...+..|. .+|..|.+++ .++..+-...-..+.+....|.+...+ ..
T Consensus 265 L~dai~~~d~~~al~~l~~Ll~~ge~p~---~iL~lL~~~f------RdLL~vK~~~~~~l~~~~~~v~~~l~~----qA 331 (620)
T PRK14954 265 VTDAIAENDAVKMLEVARFVIDNGYDEQ---DFLEKLIEHF------RNFLVLYNLRSTRLIERPESVKERYQQ----SA 331 (620)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHH---HHHHHHHHHH------HHHHHHHhccccccccCCHHHHHHHHH----HH
Q ss_pred HhcCHHHHHHHhhccCchhH-------------HHHHHHHHhccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000200 1041 RAGGQETIEKNLKDIQGPAL-------------ALILERIKLNGASQ-VSMGPTSKSSSKVPKSASNGVSKHGNRAISSR 1106 (1871)
Q Consensus 1041 ~~~G~~~~~~~~~~Lk~~~~-------------~~i~~~l~ka~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1871)
+..+.+.+.+.+..+-.... -.|..+.+-..+.. ..+.|..+++.+........+...+......+
T Consensus 332 ~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (620)
T PRK14954 332 GGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKP 411 (620)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhccCcccccCCCCCCCccccCCCCCCCCcccccccCCCCc
Q ss_pred cCCC----CCCCCCccccchhhhhhhhhhcccCCCChH-------HHHhhhhccccccCCChhHHHHHHHHHHHhhhHHH
Q 000200 1107 VIPT----KGARPESIMSVQDFAVQSQALLNVKDSNKE-------DRERMVVRRFKFEDPRIEQIQELENDMMKYFREDL 1175 (1871)
Q Consensus 1107 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~-------~R~~~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l 1175 (1871)
-.++ +...|++...+......+.+......+... ..-....-+|+-.-+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 472 (620)
T PRK14954 412 EAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMN------------------- 472 (620)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCcccccHhhhhhccc-------------------
Q ss_pred HHhhcc--cCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHH--HHHhccccchHHHHHHhhhhHHHHHHHHhcC-----
Q 000200 1176 HRRLLS--TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW--FVLQFCKSNTTCLLKVLEFLPELFDTLRDEG----- 1246 (1871)
Q Consensus 1176 ~~~lf~--~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw--~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~----- 1246 (1871)
|+ ..++.+.+..+. ........+.....=+|...| ++-++...|-.+|.-.|..++ +...+
T Consensus 473 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~ 542 (620)
T PRK14954 473 ----FTRNGSRKQPVQASSS-DAAQTGVFEGVAELEKLRMEWNQFLEHLLKKGQKVLVTHLRSCE-----LTSCSPHGVV 542 (620)
T ss_pred ----ccccchhccchhhccc-CcccCCCCCCcccHHHHHHHHHHHHHHHHHccchHHHHHHhcCc-----ccccCCCCeE
Q ss_pred ---------CcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHH
Q 000200 1247 ---------YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGF 1317 (1871)
Q Consensus 1247 ---------y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~ 1317 (1871)
|.+--.|+ .+|+.+..-+-.--=.+|-++-+=-..-...|..--.|++|.+ ||.. |.+
T Consensus 543 ~~~~~~~~~~e~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~q~l~~----~n~~--------~~~ 609 (620)
T PRK14954 543 VMTCCRKFSYEELMQDA-ALLSKEIESFYGIPLKLQIRYDAARDACTREKSIFTLFRELSE----TNDV--------VKY 609 (620)
T ss_pred EEEecccccHHHHHhHH-HHHHHHHHHHhcCCceEEEEEehhhhhhhccCCHHHHHHHHHh----hCcH--------HHH
Q ss_pred HHHhhcCcc
Q 000200 1318 LIDHHGAEI 1326 (1871)
Q Consensus 1318 li~~~G~~v 1326 (1871)
|+++||..+
T Consensus 610 l~~~f~~~l 618 (620)
T PRK14954 610 LIKEFGGEL 618 (620)
T ss_pred HHHHhCCee
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.51 E-value=93 Score=43.28 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHhhc-CCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHh
Q 000200 410 TSVKN-KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 410 ~al~~-KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~ 476 (1871)
+.|+. ..|.+|+=++..|.|..++...+-....-..-...++..|.|+-|+||.||.-|||+|+...
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 44444 35778765555566666665544433222234566889999999999999999999999874
No 187
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=38.21 E-value=1.2e+02 Score=29.31 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=61.6
Q ss_pred HHHHHHHhcChhHHhhhhhh--hHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHH
Q 000200 918 TLGAVASAMGPAVEKSSKGV--LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD 995 (1871)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l--~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~ 995 (1871)
++..++.-+|+.+++.+..+ -...+..+....+..++.+.+.|..|....|-..-+..+..+|..- +|.++..
T Consensus 3 l~~~l~~~~~~~Wk~La~~Lg~~~~~i~~i~~~~~~~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~-----~~~d~~~ 77 (83)
T PF00531_consen 3 LFDLLAEDLGSDWKRLARKLGLSESEIENIEEENPDLREQTYEMLQRWRQREGPNATVDQLIQALRDI-----GRNDLAE 77 (83)
T ss_dssp HHHHHHHSHSTCHHHHHHHTTS-HHHHHHHHHHSTSHHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHT-----THHHHHH
T ss_pred HHHHHhhcchhhHHHHHHHhCcCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHC-----CcHHHHH
Confidence 44556788888888876654 3667888877766699999999999999988888889999999854 5888888
Q ss_pred HHHHH
Q 000200 996 WLSKQ 1000 (1871)
Q Consensus 996 wL~~~ 1000 (1871)
.|.+.
T Consensus 78 ~i~~~ 82 (83)
T PF00531_consen 78 KIEQM 82 (83)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77654
No 188
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.67 E-value=1.5e+02 Score=37.70 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=40.3
Q ss_pred HHHHHh-cccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHH
Q 000200 976 VTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1035 (1871)
Q Consensus 976 i~~~L~-~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~ 1035 (1871)
|..-|. +.+..|-+|.+.+.++.. +.+.-+...+..+++.++.||.+.+.-|+.-|.-+
T Consensus 310 v~peL~~~~~~~piLka~aik~~~~-Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 310 VLPELQPDVNSHPILKADAIKFLYT-FRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp TCHHHH-SS-S-HHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred hHHHhcccCCCCcchHHHHHHHHHH-HHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 344444 334578899999999884 44444345567777889999999999999976654
No 189
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=37.11 E-value=1.9e+02 Score=29.98 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=49.1
Q ss_pred CC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 415 KV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 415 Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
|. ..-|..++.=+.+.++. ....+....-.++..+-.+++.. +.|+.|++|-..+++.++++.+.++++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQ 96 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 44 46777777777777763 23333233334455555555555 9999999999999999999999888874
No 190
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.85 E-value=2.2e+02 Score=30.45 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=58.1
Q ss_pred cccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHH
Q 000200 884 ANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVL 960 (1871)
Q Consensus 884 ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~al 960 (1871)
+-.+++.+. .+|++.|.+.| +..+...+..|++=||.++... |..++.+. ..=.-|.+.+.+..+.||-.|+.|+
T Consensus 33 Na~kf~~~~-~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 33 NADKFEENN-FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HSGGGSSGG-GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHcc-cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 346778887 89999999999 5557777888999999999887 22222221 2335677788888999999999988
Q ss_pred HHHHH
Q 000200 961 DAWLA 965 (1871)
Q Consensus 961 da~~~ 965 (1871)
..++.
T Consensus 111 Qklm~ 115 (119)
T PF11698_consen 111 QKLMV 115 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 191
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.28 E-value=4.5e+02 Score=38.48 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=137.1
Q ss_pred HhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh-HhHHHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCC
Q 000200 1169 KYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGY 1247 (1871)
Q Consensus 1169 ~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i-~~lDlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y 1247 (1871)
-.+-+.|...|.+.+-..+++|+..+-..+.+...-+- .+.|+...|+ =||+|--..|-++|++...+.+-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl-~r~~D~~~~vR~~~v~~~~~~l~~------ 330 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFL-GRFNDISVEVRMECVESIKQCLLN------ 330 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHH-HHhccCChhhhhhHHHHhHHHHhc------
Confidence 34567788888888888899998877776644332222 2556655663 599999999999999999977655
Q ss_pred cccHhHHhhhhhHHHHhhCCChHHHHHHHHHH---HHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHh---
Q 000200 1248 SLTESEAAVFLPCLVEKSGHNIEKVREKMREL---TKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH--- 1321 (1871)
Q Consensus 1248 ~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i---~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~--- 1321 (1871)
+=+-.++....-+|-+..=|..+.+|..|-.. ...+...|.+- ++.++.|-++-|-+++|.+|+.-|.++.++
T Consensus 331 ~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 331 NPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred CchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22445777777777777778887777643211 24455566666 999999999999999999999999999986
Q ss_pred ---hcCcccCccch--HHHHHHHhccCChhHHHHHHHHHHHHHHHhc-----h---hHHHHhccCCHHHHhhHHHHHHHh
Q 000200 1322 ---HGAEISGQLKS--LQIVASLTAERDGEIRKAALNTLATGYKILG-----E---DIWRYVGKLTDAQKSMLDDRFKWK 1388 (1871)
Q Consensus 1322 ---~G~~v~~~~Ka--l~~ia~~i~drD~~VR~AALn~l~~~y~~~G-----d---~v~k~~g~ls~k~~s~Leer~kr~ 1388 (1871)
.|-....+.-. -..+=.++-+.|=.-| +=+-++-.-|.+== + .+|..++.+...-..-+++.++|.
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r-~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDR-LLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 23222111111 1222223333333333 22222222222211 1 255677777777777778888776
Q ss_pred HH
Q 000200 1389 VR 1390 (1871)
Q Consensus 1389 ~~ 1390 (1871)
.+
T Consensus 489 ~~ 490 (1266)
T KOG1525|consen 489 SR 490 (1266)
T ss_pred HH
Confidence 55
No 192
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=35.91 E-value=1.1e+02 Score=35.35 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=58.7
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhh
Q 000200 409 KTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 409 ~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
..+|.-+.-..-.+++..++..++...... .+++..++..+.+.-++.+-+.|+.+-.++|+.++.+|-+.+...+.
T Consensus 6 e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~-~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 6 ESLLSYRYQHAWPEVLNVLSALFEKLGERS-SPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 344555666677788888888887654432 23457778888888899999999999999999999999877765543
No 193
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.54 E-value=6.9e+02 Score=35.79 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=111.2
Q ss_pred ccChHHHHHHHHHHHH-hhhcCCCCCCCh-HHHHHHHHHHh---ccccHHHHHHHHHH--------HHHHHHHhcccccc
Q 000200 296 ATKWSERKDAVAELTK-LASTKRIAPGDF-TEVCRTLKKLI---TDVNIAVAVEAIQA--------IGNLARGLRTHFSG 362 (1871)
Q Consensus 296 s~KWkeRkEaLe~l~~-l~~~pKi~~~dy-~eL~~~Lkk~l---~DsNv~vv~~A~~~--------i~~lA~gLr~~F~~ 362 (1871)
.+.||-=++-+..+.. +...-....-=| +-++..+..+| +|+-+.+.-..+.. +-..|.-|...+..
T Consensus 165 g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~ 244 (1048)
T KOG2011|consen 165 GPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDK 244 (1048)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3458887777888653 543222211101 12455555555 49999876544432 23334444443332
Q ss_pred chhhhHHHHHHHhccCCHH-HHHHHHHHHHHHHHhcCCChhhhHHHHHHHh-----hcCCchhHHHHHHHHHHHHhhCCh
Q 000200 363 SSRFLLPVLLEKLKEKKPT-VAESLTQTLQAMHKAGCLNLVDVVEDVKTSV-----KNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 363 y~~~~~~~lLeklKEKK~~-V~eAl~~aLda~~~~~~~~l~~~~e~i~~al-----~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
-.+.+= +|+=|-+... =++.+.......... ...++.++.+|.... ..=-|.+|..++..|.-|+...|.
T Consensus 245 tskQle---aEr~k~r~~rarle~Ll~~r~etqe~-~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~ 320 (1048)
T KOG2011|consen 245 TSKQLE---AERNKSRGNRARLESLLMLRKETQEQ-QDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE 320 (1048)
T ss_pred HHHHHH---HHhcccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence 222210 1111111100 122222222222222 233555666665433 234499999999999999998876
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1871)
.-++ ..++..+-=.|.|.+.+||..+..+|-.|.-. +..+..+...-..=|.+|.|+...
T Consensus 321 ~Fl~---dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~---~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 321 IFLS---DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK---DEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHhc---chHHHHhcceeecCccHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHHHhh
Confidence 5543 55788899999999999999988877766655 445555555555556788888743
No 194
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.16 E-value=3.1e+02 Score=41.02 Aligned_cols=151 Identities=20% Similarity=0.127 Sum_probs=103.5
Q ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHH---HHHHHHHHHHHh----
Q 000200 325 EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE---SLTQTLQAMHKA---- 396 (1871)
Q Consensus 325 eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~e---Al~~aLda~~~~---- 396 (1871)
++...|-.++. -....+-.+...||..+-.+ |..|..|...- ..-+.+||.++.-.. ++..|+-.++..
T Consensus 51 ~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~--~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 51 KLEQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLN--SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHH--HhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 34444555554 55556668888999999888 88898886544 777777787443222 334444444433
Q ss_pred cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 397 ~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
-..++++.+.-+...++.--..+|.+.+.-+......+.... ....++.+......++.|++--||-+|..|+.++..+
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 113456666656666666668899998888888777655322 2245678888888899999999999999999999887
Q ss_pred hCh
Q 000200 476 VGM 478 (1871)
Q Consensus 476 ~Ge 478 (1871)
-|-
T Consensus 208 ~~~ 210 (2067)
T KOG1822|consen 208 GGP 210 (2067)
T ss_pred cCc
Confidence 553
No 195
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=35.10 E-value=88 Score=38.01 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=62.0
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH---HHHHhhcCCH
Q 000200 414 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP---LERSIEKLDD 490 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~---l~~~l~~Ld~ 490 (1871)
..++.++.-.+.|+.. .......+.+...-++|.++..++|.++++|-.|+.+|..++..+.... +. -.++++
T Consensus 90 K~~~~~~~~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~--~tGl~~ 165 (282)
T PF10521_consen 90 KSNPGLASHVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR--RTGLFS 165 (282)
T ss_pred ccCCcccHHHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH--HcChHH
Confidence 4557777788888776 3445555556667799999999999999999999999999999988765 21 135565
Q ss_pred HHHHHHHHHHh
Q 000200 491 VRRNKLSEMIA 501 (1871)
Q Consensus 491 ~kk~KI~e~~~ 501 (1871)
.=...+..++-
T Consensus 166 v~~~al~~~L~ 176 (282)
T PF10521_consen 166 VFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHHhh
Confidence 55555555543
No 196
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=34.70 E-value=4.8e+02 Score=31.44 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=100.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--CHHHHHHHHHHHHHHHHh--cCCChh
Q 000200 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK--KPTVAESLTQTLQAMHKA--GCLNLV 402 (1871)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEK--K~~V~eAl~~aLda~~~~--~~~~l~ 402 (1871)
+..+...+.|.|..|-..|++++..++.. .+.....+.+++.+++...-. ...+..+...+|..+.-. +..-+.
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~ 133 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVN--DENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA 133 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH
Confidence 56777888899999999999999988655 334456777888888866554 567777777777666221 011144
Q ss_pred hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHHhhhCCC-CHHHHHHHHHHHHHHHHHhChh
Q 000200 403 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDG-TPEVRDAAFSVLAAIAKSVGMR 479 (1871)
Q Consensus 403 ~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~k~l~Ds-~~~VR~aA~~~l~~lmk~~Ge~ 479 (1871)
..+.++..-+...+..+|.++++.|...=+ . +.....++. ...+.++.+++.+ +.++.-.+...+.-|-..++.+
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-N-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhcc-C-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 566778888889999999999998774333 2 222222332 2456677777765 6777777777777776666644
No 197
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.07 E-value=1.9e+02 Score=35.21 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh---cCC--chhHHHHHHHHHHH-HhhCC
Q 000200 362 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK---NKV--PLVRSLTLNWVTFC-IETSS 435 (1871)
Q Consensus 362 ~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~---~Kn--P~vk~etl~~L~r~-l~~~~ 435 (1871)
-|..-++..| +-|.....++|+.++|.. -.+|.+++..+..++. .|| -.++.-|+.-++-. |.+..
T Consensus 197 ~YF~kvisal---~dEs~~~~r~aAl~sLr~-----dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 197 MYFDKVISAL---LDESDEQTRDAALESLRN-----DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcc-----CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 3555555555 346667778877776642 2456777766655553 222 22333333333333 33321
Q ss_pred hhHHHHhhhhhHHHHHhhh------CCCCH----HHHHHHHHHHHHHHHHhChhHHHHHhhcCCH-HHHHHHHHHHhc
Q 000200 436 KAAVLKVHKDYVPICMECL------NDGTP----EVRDAAFSVLAAIAKSVGMRPLERSIEKLDD-VRRNKLSEMIAG 502 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l------~Ds~~----~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~-~kk~KI~e~~~~ 502 (1871)
--+.+.+.+++|.++.|+ ++.+- .+||-|+..++...+.+|.- ...|.| .-+..++..++.
T Consensus 269 -iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 269 -IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred -eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhc
Confidence 112355678888888776 22222 49999999999999988831 123333 345566666664
No 198
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=33.58 E-value=4.2e+02 Score=36.02 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccc-cccchhhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH-FSGSSRFL 367 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~ 367 (1871)
|.+.|-.+.=+++-+-++.|-+++ |.+... -+..+...|..-+ .|-++|-..+-|+-.|+.++-.. |.......
T Consensus 278 fLD~l~~kdn~qKs~Flk~Ls~~i--p~fp~rv~~~kiLP~L~~el--~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~ 353 (700)
T KOG2137|consen 278 FLDDLPQKDNSQKSSFLKGLSKLI--PTFPARVLFQKILPTLVAEL--VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPA 353 (700)
T ss_pred hcccccccCcHHHHHHHHHHHHhh--ccCCHHHHHHhhhhHHHHHh--ccccccccccchhhhhhhccchhhhhhhhhHH
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1871)
+-+++..-.-|+..+. +.+=+|.+... ++ .+.|++-|..++++-..++...++.-+.-.++..+-......+
T Consensus 354 l~pi~~~~~~~~~~l~--i~e~mdlL~~K--t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~i 429 (700)
T KOG2137|consen 354 LKPIYSASDPKQALLF--ILENMDLLKEK--TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAI 429 (700)
T ss_pred HHHHhccCCcccchhh--HHhhHHHHHhh--CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHH
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh
Q 000200 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1871)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l 485 (1871)
-+-+..+ ++..++..|+-.+.-|++.+++.+.--.+.+.+
T Consensus 430 lP~l~~l--~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~ 469 (700)
T KOG2137|consen 430 LPRLKNL--AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDEL 469 (700)
T ss_pred HHHhhcc--hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHH
No 199
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.51 E-value=9.4e+02 Score=29.13 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhc-c------ccccchhhhHHH
Q 000200 299 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKL-ITDVNIAVAVEAIQAIGNLARGLR-T------HFSGSSRFLLPV 370 (1871)
Q Consensus 299 WkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~-l~DsNv~vv~~A~~~i~~lA~gLr-~------~F~~y~~~~~~~ 370 (1871)
=-+|.-.++.+..++..-++ +|++.+..+... -.+.+..|...++..++.+.+.|. . .|..|.+.++.+
T Consensus 35 ~~~R~~ll~D~~al~~~g~~---~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 111 (324)
T PF11838_consen 35 PLDRAQLLDDLFALARAGRL---SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEP 111 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTSS----HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45788888888888777444 488889999888 459999999999999999997777 1 277788899999
Q ss_pred HHHHhccCC
Q 000200 371 LLEKLKEKK 379 (1871)
Q Consensus 371 lLeklKEKK 379 (1871)
++++++=..
T Consensus 112 ~~~~l~~~~ 120 (324)
T PF11838_consen 112 LYERLGWDP 120 (324)
T ss_dssp HHHH--SSS
T ss_pred HHHHcCCCC
Confidence 999986553
No 200
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.50 E-value=1.2e+02 Score=30.29 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhc
Q 000200 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1871)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1871)
-+..||..+|+.+++.++.|. ..-+..+......+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 9 ~l~~ia~~iG~~Wk~Lar~LGls~~dI~~i~~~~~~~~eq~~~mL~~W~~r~g~~AT~~~L~~aL~~ 75 (86)
T cd08318 9 QITVFANKLGEDWKTLAPHLEMKDKEIRAIESDSEDIKMQAKQLLVAWQDREGSQATPETLITALNA 75 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 355689999999999988654 55577777667789999999999999999988888888888874
No 201
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=33.10 E-value=3.6e+02 Score=37.22 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=101.5
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc
Q 000200 297 TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK 376 (1871)
Q Consensus 297 ~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklK 376 (1871)
+.|.-+++-|....+..+..-....+|....+-++..+.. .-++...++..+-.||.--+-...-.-+.+++.+++.|.
T Consensus 222 kr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~k-QeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ld 300 (708)
T PF05804_consen 222 KRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRK-QEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLD 300 (708)
T ss_pred HHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHc
Confidence 4444444444443333222222245677666666666654 334455778999999998887777778899999999998
Q ss_pred cCCHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh-hhHHHHH
Q 000200 377 EKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICM 451 (1871)
Q Consensus 377 EKK~~V~eAl~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k-~~~~~l~ 451 (1871)
.....+.-.+..+|.-+.-+. .+.=..+++-+...++.+|+.+...++..|. .|+..+ ..-..+++ .++|.++
T Consensus 301 r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~-NLSfd~-~~R~~mV~~GlIPkLv 378 (708)
T PF05804_consen 301 RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF-NLSFDP-ELRSQMVSLGLIPKLV 378 (708)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH-HhCcCH-HHHHHHHHCCCcHHHH
Confidence 887666666666665553210 0111246778888889999988888887666 333222 11123333 3889999
Q ss_pred hhhCCCCHHHHHH
Q 000200 452 ECLNDGTPEVRDA 464 (1871)
Q Consensus 452 k~l~Ds~~~VR~a 464 (1871)
..|.|. ..|..
T Consensus 379 ~LL~d~--~~~~v 389 (708)
T PF05804_consen 379 ELLKDP--NFREV 389 (708)
T ss_pred HHhCCC--chHHH
Confidence 999875 35543
No 202
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=32.62 E-value=1.8e+02 Score=35.79 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------------hhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000200 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------------DVVEDVKTSVKNKVPLVRSLTLNWVTFC 430 (1871)
Q Consensus 363 y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~------------~~~e~i~~al~~KnP~vk~etl~~L~r~ 430 (1871)
|++.++ .+|.+. -.+..+++.+...++-+.... -... +....+...+++..+.+...++..|+..
T Consensus 56 ~~~~~l-~lL~~~-~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFL-NLLNKL-SSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHc-cCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444433 455555 455556666666666655431 1111 1334455577788899999999999999
Q ss_pred HhhCChhHHH---HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 431 IETSSKAAVL---KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 431 l~~~~~~~~~---~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+...+..... ..+..++..+...++.++.++...|..+|+.+++.=.+|.+
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 9876543332 33444555555555557778889999999988876555543
No 203
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=30.86 E-value=2.1e+02 Score=35.90 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.9
Q ss_pred HhhchhhhcccChhHHHHHHHHHHHHHH
Q 000200 170 LKMLPELFDHQDQNVRASSKGLTLELCR 197 (1871)
Q Consensus 170 lk~l~~lf~~~dk~VR~ea~~L~vely~ 197 (1871)
=.|.|.|+.|.|..||+++..++.+++-
T Consensus 240 p~WAP~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 240 PDWAPGLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred cccchHhhCCCchhHHHHHHHHHHHHhC
Confidence 3689999999999999999999998653
No 204
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=1.8e+02 Score=39.65 Aligned_cols=109 Identities=15% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhccCc
Q 000200 63 DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 142 (1871)
Q Consensus 63 DsN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K~P 142 (1871)
+.|+.+-|.|++-|+.|++-| .+...+..++.-+...|-.+ -.+.--+..+.--.---|+
T Consensus 421 e~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a------------------~~Pskyir~iyNRviLEn~ 480 (865)
T KOG1078|consen 421 EENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA------------------PNPSKYIRFIYNRVILENA 480 (865)
T ss_pred HhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC------------------CCcchhhHHHhhhhhhhhh
Q ss_pred hhHHHHHHHHHHHHHhhCC-CccChhHHHhhchhhhcccChhHHHHHHHHHHHH
Q 000200 143 KAVVPAIDVMFQALSEFGA-KIIPPKRILKMLPELFDHQDQNVRASSKGLTLEL 195 (1871)
Q Consensus 143 Kvvaaai~~l~~~l~~FG~-~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vel 195 (1871)
.|.++++.++ ..||. ......+|+-.|...+.++|-.||+.|.-.+..+
T Consensus 481 ivRaaAv~al----aKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l 530 (865)
T KOG1078|consen 481 IVRAAAVSAL----AKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNL 530 (865)
T ss_pred hhHHHHHHHH----HHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHh
No 205
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.20 E-value=1.4e+03 Score=29.99 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccC-hhHHHHHHHHHHHHHHhhCC--chhhHHHhhh
Q 000200 145 VVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQD-QNVRASSKGLTLELCRWIGK--DPVKTILFEK 211 (1871)
Q Consensus 145 vaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~d-k~VR~ea~~L~vely~wlG~--~~lk~~L~~~ 211 (1871)
.+.++.-+.++|..|-. -++-.|-.....++++.. ..+|..|..|+.++-+.=+. +..+..+|..
T Consensus 7 R~~a~~~l~~~i~~~~~--~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~ 74 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPL--SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHhCCc--hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHH
Confidence 46788889999999976 456778888899998874 56999999999999876543 2344444443
No 206
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=30.13 E-value=1.5e+02 Score=34.30 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHH
Q 000200 912 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 912 v~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~ 991 (1871)
-..++++++.+-..+|+.+.++...++-.+-+.=.+..-..|.++-+|+.+.+.+.|.+.++..+.=-+.++......|.
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ra 96 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPGRA 96 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcccc
Confidence 34678888888888887765554444444433333344588999999999999999999998754433332222344566
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHH
Q 000200 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1027 (1871)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~d 1027 (1871)
=+|--|.++..+. +-.-....+.|+...+..+..+
T Consensus 97 WLLPlLr~~i~~~-~L~fF~~~~lPla~~~~~~~~~ 131 (198)
T PF08161_consen 97 WLLPLLRDHIRNA-SLSFFVEEFLPLARRLRQKAQK 131 (198)
T ss_pred hhHHHHHHhccCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554332 1223455556655554444433
No 207
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=29.97 E-value=62 Score=36.23 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHhhcchhhHHHHHHHHhhcc-----CchhHHHHHHHHHHHHH-hhCC-CccChhHHHhhchhhhcc
Q 000200 107 PKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNK-----VAKAVVPAIDVMFQALS-EFGA-KIIPPKRILKMLPELFDH 179 (1871)
Q Consensus 107 ~~tk~~a~e~~l~~vE~e~~~~v~e~ll~~~~~K-----~PKvvaaai~~l~~~l~-~FG~-~vv~~K~ilk~l~~lf~~ 179 (1871)
...+.....-+-.|++.++.+..++.|.....+. ...+..+|+.|++.++. ..|. .++.-...+..+-..+.+
T Consensus 90 v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 90 VSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 3444456666777787777777777765554443 34588999999988776 5777 456767778888888999
Q ss_pred cChhHHHHHHHHHHHHH
Q 000200 180 QDQNVRASSKGLTLELC 196 (1871)
Q Consensus 180 ~dk~VR~ea~~L~vely 196 (1871)
.+..+|..+..++..++
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887764
No 208
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.61 E-value=5.7e+02 Score=33.44 Aligned_cols=159 Identities=11% Similarity=0.196 Sum_probs=117.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhh-----h
Q 000200 653 SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM-----K 727 (1871)
Q Consensus 653 kesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~-----~ 727 (1871)
+-++-..+...|+++.++.. .+.++..+...|+..|+.-.+=.++...+-+++..++......-++..++..+ .
T Consensus 187 ~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 187 STSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred ccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCcc
Confidence 44566777888888887776 57889999999998888887777889999999999998776677778888887 2
Q ss_pred hcCChhhHHHHHHHHHHHHHHh---ccCccchHh--HHHHHhhhcCCCccHHHHHHHHHHHHHHHhhh-CchhHhhhhcc
Q 000200 728 DHKNPKVLSEGILWMVSAVEDF---GVSHLKLKD--LIDFCKDTGLQSSAAATRNATIKLLGALHKFV-GPDIKGFLADV 801 (1871)
Q Consensus 728 ~~KnPKv~~e~l~wl~~ai~eF---G~~~~~~K~--li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~-G~~l~~~l~dl 801 (1871)
...++.+.-+++..+..++-.. |+..++..+ ++..+..+ +...++.|=.. ++..+++.+ |.--+.+.+.-
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a-l~~~~~~v~~e---Il~~i~~ll~~~~~~~l~~~~ 341 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA-LKSNSPRVDYE---ILLLINRLLDGKYGRELSEED 341 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH-HhCCCCeehHH---HHHHHHHHHhHhhhhhhcccC
Confidence 3467888999999999998866 444555666 99999998 99888876554 444555555 55555544333
Q ss_pred hHHHHHHHHHHHhcC
Q 000200 802 KPALLSALDAEYEKN 816 (1871)
Q Consensus 802 kpall~~ie~EF~K~ 816 (1871)
=..++..++.=+++.
T Consensus 342 W~~~~~i~~~~~~~~ 356 (464)
T PF11864_consen 342 WDIILDIIEEIFDKI 356 (464)
T ss_pred chHHHHHHHHHHhhc
Confidence 335666666666665
No 209
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.58 E-value=3.9e+02 Score=33.23 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=53.6
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHH---HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 414 NKVPLVRSLTLNWVTFCIETSSKAAV---LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~---~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
+..|..|.+-..+|..+.+.+....+ ....+.++..++-++.++..+|-+.|..++..++.-+..
T Consensus 131 ~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 131 EEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999887654332 134578899999999999999999999999999877664
No 210
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.56 E-value=1.9e+02 Score=33.69 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=81.2
Q ss_pred CccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHh
Q 000200 846 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 925 (1871)
Q Consensus 846 prvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~a 925 (1871)
...|+..-|+ .|.+.|.+.+.=.|-=|-+-+..+|-...++|-|-+ -.|+..||.-|.-.|+-+...+|++|+++...
T Consensus 108 e~Ldy~~yLp-~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 108 EKLDYCPYLP-LFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred HhccchHHHH-HHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 3456666554 588999999999999999999999987778999987 99999999999999999999999999998765
Q ss_pred ---cChhHHhhhhhhhHHHHHHhccC
Q 000200 926 ---MGPAVEKSSKGVLSDILKCLGDN 948 (1871)
Q Consensus 926 ---mG~~~~k~~k~l~~~il~~l~D~ 948 (1871)
.|+..-+|-|.++|. +..++.+
T Consensus 186 ~~~vG~aLVPfYRQlLp~-~n~~k~~ 210 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPV-LNTFKNS 210 (262)
T ss_pred ccccchhhhhHHHHhhhh-hhhhccc
Confidence 467778888888874 3444433
No 211
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.50 E-value=1.1e+03 Score=28.83 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=91.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCC----CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHH--Hhccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAP----GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR--GLRTHFS 361 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~----~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~--gLr~~F~ 361 (1871)
-|..-+....|.-..-++--|..++.. ++-.. +.+..+++.|+..+...+..++..|++|++.|.+ ..|.-|-
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 477778888999999999999887643 33322 3456667777776666777788999999999974 3445553
Q ss_pred cchhhhHHHHHHHh----ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 362 GSSRFLLPVLLEKL----KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 362 ~y~~~~~~~lLekl----KEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
. ...++.++.-+ +.++....+-.=+++-.++.- |+ -+++...|.+++ ...-|.+.++.+.+.
T Consensus 189 ~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL---SF---~~~~~~~~~~~~------~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 189 K--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL---SF---EPEIAEELNKKY------LIPLLADILKDSIKE 254 (312)
T ss_dssp T--HHHHHHHHHHHH---------HHHHHHHHHHHHHHH---TT---SHHHHHHHHTTS------HHHHHHHHHHH--SH
T ss_pred h--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH---hc---CHHHHHHHhccc------hHHHHHHHHHhcccc
Confidence 3 55566666666 345555556555555555542 33 245666666666 455777788776663
Q ss_pred HHHHhhhhhHHHHHhhhCCCCHH
Q 000200 438 AVLKVHKDYVPICMECLNDGTPE 460 (1871)
Q Consensus 438 ~~~~~~k~~~~~l~k~l~Ds~~~ 460 (1871)
|+..-++.++..+++-....
T Consensus 255 ---KvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 255 ---KVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp ---HHHHHHHHHHHHTTSSSSTT
T ss_pred ---hHHHHHHHHHHHHHhccHHH
Confidence 44555677777777666554
No 212
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=1.6e+02 Score=38.46 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHH-----HHHhcccc-chHHHHHHhhh-hHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHH
Q 000200 1203 KDIIEVLDILLRW-----FVLQFCKS-NTTCLLKVLEF-LPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1275 (1871)
Q Consensus 1203 ~~~i~~lDlllkw-----~tlr~~dt-N~~vl~k~Le~-l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~ 1275 (1871)
.++....|-++|| +.+-|+-| |-.+...+|.| +. |..|-||..
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avs------------------------------D~nDDVrRA 571 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVS------------------------------DGNDDVRRA 571 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecc------------------------------cCchHHHHH
Q ss_pred HHHHHHHHhhccCccchHHHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHH
Q 000200 1276 MRELTKQIVNFYSATKTLPYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNT 1354 (1871)
Q Consensus 1276 vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~ 1354 (1871)
+++-.=--.|-..-..+-.+|-| +|-|.-+|...--.||-.....|.++ |+..+-.+.-|...-||++|.-+
T Consensus 572 --AViAlGfvc~~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-----a~diL~~L~~D~~dfVRQ~AmIa 644 (926)
T COG5116 572 --AVIALGFVCCDDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-----ATDILEALMYDTNDFVRQSAMIA 644 (926)
T ss_pred --HHHheeeeEecCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-----HHHHHHHHhhCcHHHHHHHHHHH
Q ss_pred HHHHHHHhchhHHHHhccCCHHHHhhHHHH
Q 000200 1355 LATGYKILGEDIWRYVGKLTDAQKSMLDDR 1384 (1871)
Q Consensus 1355 l~~~y~~~Gd~v~k~~g~ls~k~~s~Leer 1384 (1871)
++-...-+.+++---+.++..+-.+.|.++
T Consensus 645 ~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 645 VGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHhhcCcccChhHHHHHHHHHHHHhhh
No 213
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=29.19 E-value=1.4e+02 Score=31.68 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=45.5
Q ss_pred hHhHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHH
Q 000200 715 PGFIFERLYKIMKDHKN---PKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLL 783 (1871)
Q Consensus 715 ~~~V~~~l~~~~~~~Kn---PKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll 783 (1871)
...|++.+...+..+.+ +.+...+|..+.+.+.-+....+.-.+++..+-.. | +++..|.+|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~-l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL-L--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH-T--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH-c--CCHHHHHHHHHhC
Confidence 34455555555544443 89999999999999985555544445688888777 7 5666699988875
No 214
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=28.82 E-value=2e+02 Score=28.46 Aligned_cols=74 Identities=15% Similarity=0.261 Sum_probs=57.3
Q ss_pred HHHHHHHhcChhHHhhhhhhhH--HHHHHhc-cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000200 918 TLGAVASAMGPAVEKSSKGVLS--DILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1871)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~~--~il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1871)
.+..||.-+|+.+.+.++.+-- .=+..+. |+...+.+.+.+.|..|...-|-..-+..+..+|..- +|.++.
T Consensus 6 ~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i-----~r~Di~ 80 (84)
T cd08317 6 RLADISNLLGSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKI-----GRDDIV 80 (84)
T ss_pred hHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHc-----ChHHHH
Confidence 3567889999999998887642 2355555 5566789999999999999999877788899999843 577776
Q ss_pred HH
Q 000200 995 DW 996 (1871)
Q Consensus 995 ~w 996 (1871)
.-
T Consensus 81 ~~ 82 (84)
T cd08317 81 EK 82 (84)
T ss_pred HH
Confidence 53
No 215
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=28.74 E-value=3.4e+02 Score=35.85 Aligned_cols=109 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred HHHHhc-ChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--hhhhH--HHHHHHhcccCCcchHHHHHH
Q 000200 921 AVASAM-GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFD 995 (1871)
Q Consensus 921 ~lA~am-G~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--~~~~~--~i~~~L~~~~~~p~~r~e~l~ 995 (1871)
+||.|= ...+++....++|++|.+|+-.-..||..+++.|..+-..+.- +.-+| .+.+-.++++.++..|.=.+-
T Consensus 7 RlalAdtD~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsli 86 (501)
T PF13001_consen 7 RLALADTDEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLI 86 (501)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHH
Confidence 455565 6678899999999999999999999999999999998887753 33344 566666666667889999999
Q ss_pred HHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHH
Q 000200 996 WLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1030 (1871)
Q Consensus 996 wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRk 1030 (1871)
|+...+..... .+-..++..++.++..+..+-..
T Consensus 87 yi~~g~~Rl~~-~e~~~llP~ll~~is~~~~~~~~ 120 (501)
T PF13001_consen 87 YIEMGFDRLDD-EERRELLPSLLKGISKKPKQHQD 120 (501)
T ss_pred HHHHhhhcCCH-HHHHHHHHHHHHhhccCchhhhH
Confidence 99998877742 34455566688888766544433
No 216
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=28.10 E-value=71 Score=34.16 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHHH
Q 000200 1641 LVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKL 1705 (1871)
Q Consensus 1641 LvmKCLwK~tk~l~~~~~~ld~d~iL~~ih~Fl~~~p~~~wr~r~~~~D~PLRTvKTiLh~Lvk~ 1705 (1871)
=||+-||... |.+ .-+||.++..- -|--.-||||+|..|||-
T Consensus 10 eVM~ilW~~~---~~t---------~~eI~~~l~~~-----------~ews~sTV~TLl~RL~KK 51 (123)
T COG3682 10 EVMEILWSRG---PAT---------VREIIEELPAD-----------REWSYSTVKTLLNRLVKK 51 (123)
T ss_pred HHHHHHHHcC---Ccc---------HHHHHHHHhhc-----------ccccHHHHHHHHHHHHhc
Confidence 4899999986 333 35778888762 144557999999999983
No 217
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=27.76 E-value=1.1e+02 Score=29.41 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=54.4
Q ss_pred HHHHHHhcChhHHhhhhhhh--HHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhc
Q 000200 919 LGAVASAMGPAVEKSSKGVL--SDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 982 (1871)
Q Consensus 919 i~~lA~amG~~~~k~~k~l~--~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~ 982 (1871)
+..||..+|...++.++.+. ..-+..+..+.+.+++.+.+.|..|...-|-+.-++.+..+|..
T Consensus 2 ~~~ia~~lg~~W~~la~~Lgl~~~~I~~i~~~~~~~~~~~~~mL~~W~~~~~~~at~~~L~~aL~~ 67 (79)
T cd01670 2 LDKLAKKLGKDWKKLARKLGLSDGEIDQIEEDNPRVREQAYQLLLKWEEREGDNATVGNLIEALRE 67 (79)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHhCCCHHHHHHHHHHHHHhccCcCcHHHHHHHHHHH
Confidence 45788899999988877664 66688898888889999999999999999877778888888884
No 218
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=26.86 E-value=5.6e+02 Score=32.87 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=112.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh---cCCCCCCChHHHHHH-------HHHHhccccHHHHHHHHHHHHHHHHHhcc-
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS---TKRIAPGDFTEVCRT-------LKKLITDVNIAVAVEAIQAIGNLARGLRT- 358 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~---~pKi~~~dy~eL~~~-------Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~- 358 (1871)
..+..-++-|-+|.++|-.+.++.. ..++ |.++... ++.-|.|--.-+-+..++.|..|-.-+=+
T Consensus 398 leaealcktppdqedallaaikkfgeePiaki----kedhfenlkagieeiReaIddisaekfqasfelikciiahlike 473 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKI----KEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKE 473 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4455667899999999998776432 3344 4444444 44455566666667777777776666643
Q ss_pred -ccccc-----hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhh-cCCchhHHHHHHHHHHH
Q 000200 359 -HFSGS-----SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFC 430 (1871)
Q Consensus 359 -~F~~y-----~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~-~~~~l~~~~e~i~~al~-~KnP~vk~etl~~L~r~ 430 (1871)
.|..| ..--++.++-+-+|--+-++.-+.+.+..++.. ..-++.-+-+.+...++ +|-|.+-..-..-|+|.
T Consensus 474 hkfskledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarl 553 (666)
T KOG4825|consen 474 HKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARL 553 (666)
T ss_pred hhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHH
Confidence 37776 233467788888888887877777777777654 11223233355555665 78899988888899999
Q ss_pred HhhCCh--hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 431 IETSSK--AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 431 l~~~~~--~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
++...+ +-+. .......-+...+.+--++|++|+..+..+.
T Consensus 554 lkdlgkGragfi--ediakkfgVpaeehglndkreaafaiicdmt 596 (666)
T KOG4825|consen 554 LKDLGKGRAGFI--EDIAKKFGVPAEEHGLNDKREAAFAIICDMT 596 (666)
T ss_pred HHhcCCCccchh--HHHHHHhCCCccccchhHHHHhHhhhhhhhc
Confidence 976433 2221 0111222344556667789999987665544
No 219
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=26.80 E-value=4e+02 Score=35.99 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=61.9
Q ss_pred hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchh
Q 000200 932 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAA 1011 (1871)
Q Consensus 932 k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~ 1011 (1871)
+....++.-+.++|.|.-+-+|.-|++.+..+++-- ...+.-|+|+.....+
T Consensus 342 ~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~----------------sk~~~~r~ev~~lv~r------------ 393 (1128)
T COG5098 342 QKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN----------------SKTVGRRHEVIRLVGR------------ 393 (1128)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc----------------ccccchHHHHHHHHHH------------
Confidence 334455666788999999999999999888775531 1234457777665544
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Q 000200 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1049 (1871)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~ 1049 (1871)
||+||+.-||++|-.++..++..-.+..+.
T Consensus 394 --------~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 394 --------RLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred --------HhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 579999999999999999888877777665
No 220
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=26.53 E-value=1e+03 Score=32.00 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=112.1
Q ss_pred ChHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHhccccccc---hhhhHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000200 322 DFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTHFSGS---SRFLLPVLLEKLKEKKPTVAESLTQTLQAMH 394 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~----DsNv~vv~~A~~~i~~lA~gLr~~F~~y---~~~~~~~lLeklKEKK~~V~eAl~~aLda~~ 394 (1871)
=||.++++|+.+.+ +.-.+--+..-+=...++.=-|+.|.-| -...+.-+++...|||..|...+.+.|+.++
T Consensus 234 l~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v~ 313 (652)
T KOG2050|consen 234 LRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPVA 313 (652)
T ss_pred HhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHHh
Confidence 38888888888432 2222222333444555555556665433 3456788999999999999999999999999
Q ss_pred HhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhC--ChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 395 KAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 395 ~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
..+.+.+.-+.--+++++.+-++.-+.|.+..+...+... ++ +=....++|+--+++-=|+.-..+|-..
T Consensus 314 eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~--------dGS~vAm~li~~a~aKeRK~IiK~~K~h 385 (652)
T KOG2050|consen 314 EKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTR--------DGSRVAMKLIWHATAKERKLIIKNMKEH 385 (652)
T ss_pred hcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC--------chHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9866555444556778999999999999998888776532 11 1123456666667777777666655433
Q ss_pred -----HHHhChhHHHHHhhcCCHHHHH
Q 000200 473 -----AKSVGMRPLERSIEKLDDVRRN 494 (1871)
Q Consensus 473 -----mk~~Ge~~l~~~l~~Ld~~kk~ 494 (1871)
+-..|-..+...++-+||.++.
T Consensus 386 ~~K~A~~~yGh~vlia~ldc~DDT~l~ 412 (652)
T KOG2050|consen 386 VEKIANDEYGHLVLIALLDCTDDTKLL 412 (652)
T ss_pred HHHHHhhccCceehhhhhcccchHHHH
Confidence 3346667788888989886643
No 221
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=26.21 E-value=6.8e+02 Score=30.33 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=62.6
Q ss_pred HHHHHHhhccCccchH-------HHHHhhh-ccCChhhHhHHHHHHHHHHHhhcCcc--cCccchHHHHHHHhccCChhH
Q 000200 1278 ELTKQIVNFYSATKTL-------PYILEGL-RSKNNRTRIECVDLVGFLIDHHGAEI--SGQLKSLQIVASLTAERDGEI 1347 (1871)
Q Consensus 1278 ~i~~~~~~vyp~skvf-------~~l~~gl-ksKN~r~R~Ecl~el~~li~~~G~~v--~~~~Kal~~ia~~i~drD~~V 1347 (1871)
.+++-+|+++|+||.+ ..+++-+ .+.....++.||+-|-+++-.+=.+. ......+..|+.++.++.. -
T Consensus 113 ~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~-~ 191 (257)
T PF08045_consen 113 RVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST-D 191 (257)
T ss_pred HHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc-c
Confidence 6889999999999865 4667777 55678889999999999886665554 2233467899999976653 2
Q ss_pred HHHHHHHHHHHHHHhchh
Q 000200 1348 RKAALNTLATGYKILGED 1365 (1871)
Q Consensus 1348 R~AALn~l~~~y~~~Gd~ 1365 (1871)
|+-=+-|+.-.|+|+++.
T Consensus 192 ~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 192 RELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHHhHHHHHHHHHHHccc
Confidence 333366666667766654
No 222
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=25.71 E-value=4.5e+02 Score=27.22 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1871)
..+|++|..-| +-....+.|..|+..+.-.-..+++.+...++...|.-|...+-.+...+.+........+...+.+
T Consensus 5 ~~~l~~L~~~~--~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~ 82 (114)
T cd03562 5 NALLEKLTFNK--NSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVP 82 (114)
T ss_pred HHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 34566665543 2233444555555442112245666677777777777776555555555555432211111122244
Q ss_pred HHHhhhCCCCHHHHHHH
Q 000200 449 ICMECLNDGTPEVRDAA 465 (1871)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA 465 (1871)
.+.......++.+|+.-
T Consensus 83 ~f~~~~~~~~~~~r~kl 99 (114)
T cd03562 83 LFLDAYEKVDEKTRKKL 99 (114)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 44444444455555433
No 223
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.64 E-value=1.7e+03 Score=29.71 Aligned_cols=180 Identities=18% Similarity=0.208 Sum_probs=111.0
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc--CCC----ccchHHHHHHHHHHHHHHHHhcC
Q 000200 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PGW----SEKNVQVQQQVIEVINYLAATAT 675 (1871)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~--Pgw----kesNfqV~~~~leil~~la~~~~ 675 (1871)
+=.+|.+.+.+++=+.|-+|++.|. .|...+.++=+|... -|- .-.|++.+--.+.++..|..+-.
T Consensus 208 Yy~~It~a~~g~~~~~r~eAL~sL~--------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 208 YYKEITEACTGSDEPLRQEALQSLE--------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc--------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 3456777777799999999999886 233444444433221 121 24789999999999999988644
Q ss_pred CCCccchhh----hccchhhccccch--------hhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhc-CChhhHH
Q 000200 676 KFPKKCVVL----CLLGISERVADIK--------TRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDH-KNPKVLS 736 (1871)
Q Consensus 676 ~fs~~~~~~----~l~~lveKlgD~K--------~r~~a~e~L~~~aE~~~~~~------V~~~l~~~~~~~-KnPKv~~ 736 (1871)
-|=..+.+. ++..+|.|--+.. +|+-|..++..+|-.++-.| |+.-+.+.+.+. |.+-.+=
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 455555555 4455666666655 89999999999988776554 233333443344 3444455
Q ss_pred HHHHHHHHHHHHhccCcc------chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchh
Q 000200 737 EGILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDI 794 (1871)
Q Consensus 737 e~l~wl~~ai~eFG~~~~------~~K~li~~~k~~~l~~s---N~~VR~aAi~Ll~~ly~~~G~~l 794 (1871)
.|+ ..|.+||-..+ +++....-++.. +... |...+..|-.+-+.|++..++-+
T Consensus 360 Gai----~gL~~lg~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ii 421 (576)
T KOG2549|consen 360 GAI----AGLSELGHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENPII 421 (576)
T ss_pred hHH----HHHHHhhhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence 555 34566675433 334444444443 4433 33347777777777777776533
No 224
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.12 E-value=6.9e+02 Score=31.41 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=70.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHH--HHHHHHHHHHHHhc-Ch---hHHhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLV--MATLITLGAVASAM-GP---AVEKSS 934 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds-Nk~lv--~~al~ii~~lA~am-G~---~~~k~~ 934 (1871)
+-+.+=..|.+||+.++ .++.| ..|++-+-.-+.+. ..|+. ...|..+-+++.|| .. ..++|.
T Consensus 187 ~~~~~~~~r~~aL~sL~-----tD~gl-----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 187 LVGSNEEKRREALQSLR-----TDPGL-----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HhCCCHHHHHHHHHHhc-----cCCCc-----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 44567778888888874 23333 55666555555332 22232 22344455555665 32 457999
Q ss_pred hhhhHHHHHHhc----------cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhcc
Q 000200 935 KGVLSDILKCLG----------DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1003 (1871)
Q Consensus 935 k~l~~~il~~l~----------D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~ 1003 (1871)
..|+|+++.|+- |.--.+|+-|...|..++...| +.++.++..+..-+.+.|.+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~---------------~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFS---------------TSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcC---------------CCCCcHHHHHHHHHHHHHcC
Confidence 999999999983 3334778887777777766654 12344566666555555543
No 225
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=25.08 E-value=1.6e+02 Score=29.49 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=59.7
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHh-ccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000200 918 TLGAVASAMGPAVEKSSKGVL--SDILKCL-GDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1871)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l-~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1871)
.+..||..+|+...+.++-+- ..=+..+ .|....+.+-+.+.|..|....|-+.-+..+..+|.. + +|.+++
T Consensus 6 ~l~~ia~~LG~dW~~LA~eLg~s~~dI~~i~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~--i---~R~DIv 80 (84)
T cd08803 6 RMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTK--I---NRIDIV 80 (84)
T ss_pred HHHHHHHHhhccHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH--C---CcHHHH
Confidence 466789999999999888654 3335666 5557778899999999999999988888899999984 2 588887
Q ss_pred HHH
Q 000200 995 DWL 997 (1871)
Q Consensus 995 ~wL 997 (1871)
..|
T Consensus 81 ~~~ 83 (84)
T cd08803 81 TLL 83 (84)
T ss_pred Hhc
Confidence 654
No 226
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.99 E-value=7.9e+02 Score=31.69 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=105.5
Q ss_pred hhhhhhccChHHHHHHHHHHHHhh-hcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc-hhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRF 366 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~-~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~ 366 (1871)
+.+.+.|.+=.||--..+-|..+- +.+...+.--..+...|-..+. +.+-+.+...+++++.+.+|...+...- ...
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~f 217 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQF 217 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 445568899999987766677654 3444333223334444444554 7899999999999999999977554332 222
Q ss_pred hHHHHHHHhccCCHHH-HHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh
Q 000200 367 LLPVLLEKLKEKKPTV-AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 445 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V-~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~ 445 (1871)
+...++==.|-+--.. -..+..|+..++.....-...++..++..-=.-|++=..--+..+...++..++....++...
T Consensus 218 l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~ 297 (409)
T PF01603_consen 218 LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVP 297 (409)
T ss_dssp HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2222222233333332 467778888887763212223344444333344444444566777788887777777778888
Q ss_pred hHHHHHhhhCCCCHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFS 467 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~ 467 (1871)
+...+.+|++-..-.|-+.|..
T Consensus 298 lf~~la~ci~S~h~qVAErAl~ 319 (409)
T PF01603_consen 298 LFKRLAKCISSPHFQVAERALY 319 (409)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHG
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 8999999999999999888764
No 227
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=24.87 E-value=3.1e+02 Score=30.50 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHHHhh--------hccchhHhHHHHHHHHHHHHHHhcChhHHhhhh
Q 000200 865 PDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRG--------RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 935 (1871)
Q Consensus 865 ~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~aLk~--------rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k 935 (1871)
.+++.|.=|||-++.+++.+...+.... ..++...+|. -+...+..+...+++++..+...++...+.-.-
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999987655555221 1234444433 333445888899999999999999998888888
Q ss_pred hhhHHHHHHhccCch---hHHHHHHHHHHHHHHh
Q 000200 936 GVLSDILKCLGDNKK---HMRECTLTVLDAWLAA 966 (1871)
Q Consensus 936 ~l~~~il~~l~D~K~---~vR~aa~~alda~~~~ 966 (1871)
.++..++..+-+++. .-|..+++++..++..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 899999885555443 5677777877777653
No 228
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=24.38 E-value=1.2e+03 Score=28.32 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=101.3
Q ss_pred hhhhhhc-cChHHHHHHHHHHHHhhhcCCCCCCC--hHH-HHH---HHHHHhcccc-H---HHHHHHHHHHHHHHHHhcc
Q 000200 290 FWEGVKA-TKWSERKDAVAELTKLASTKRIAPGD--FTE-VCR---TLKKLITDVN-I---AVAVEAIQAIGNLARGLRT 358 (1871)
Q Consensus 290 f~~~l~s-~KWkeRkEaLe~l~~l~~~pKi~~~d--y~e-L~~---~Lkk~l~DsN-v---~vv~~A~~~i~~lA~gLr~ 358 (1871)
.+.++.| .-|.-=.+.|..|..+.+++=+.+++ +-- ++. -+-.-+.+.+ + .-+...++.|..+|+.-+
T Consensus 69 l~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~- 147 (262)
T PF14225_consen 69 LLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG- 147 (262)
T ss_pred HhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-
Confidence 4555544 44555556666666665554444442 111 111 1222223333 1 455566677777775432
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000200 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1871)
Q Consensus 359 ~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1871)
...-++++-.=.-.+|++++..+++.+.---++++.. .+ .+++.-+...+.|+.+-+|..++..|.-.++...-.
T Consensus 148 -~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~--~~-~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~- 222 (262)
T PF14225_consen 148 -LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD--HE-FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR- 222 (262)
T ss_pred -CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch--hH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-
Confidence 3344555555555688999988887665555555421 11 245667788888999999999999999888764211
Q ss_pred HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 439 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 439 ~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
.+.-.+++.++.+.+.. +--..|.+.|..+|.+.|
T Consensus 223 -~~~~~dlispllrlL~t---~~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 223 -SPHGADLISPLLRLLQT---DLWMEALEVLDEIVTRSG 257 (262)
T ss_pred -CCcchHHHHHHHHHhCC---ccHHHHHHHHHHHHhhcc
Confidence 01224466667777743 233455556666666555
No 229
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=24.21 E-value=4e+02 Score=29.45 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhH
Q 000200 873 SIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 952 (1871)
Q Consensus 873 aLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~v 952 (1871)
.+++|+.+|. |+.+.-.. ++++|-+-++|.-+|. ++
T Consensus 51 ~~~AL~~aL~--~~P~~t~~---------q~vK~~a~~~v~~vL~---------------------------------~i 86 (152)
T KOG3380|consen 51 SLEALQTALL--NPPYGTKD---------QEVKDRALNVVLKVLT---------------------------------SI 86 (152)
T ss_pred HHHHHHHHHh--CCCCCCcc---------HHHHHHHHHHHHHHHH---------------------------------HH
Q ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCC
Q 000200 953 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKS 1025 (1871)
Q Consensus 953 R~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~ 1025 (1871)
|++=+.+.-.-+..-+.|.++.+|-..|..|..++. =..+|.|.++-+....-+ +|+-+|.||.
T Consensus 87 k~adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s-~~~LL~WHEk~~~~~GvG--------~IvRvLs~r~ 150 (152)
T KOG3380|consen 87 KQADIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSS-CVSLLQWHEKLVAKSGVG--------CIVRVLSDRQ 150 (152)
T ss_pred HHHhHHHHHHHhhHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHhcCCc--------eEEEeecCCc
No 230
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=24.20 E-value=89 Score=32.65 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhhhhhhccCCChhHHHHHHHHHHHhhChHHHhhcCCCCCCChhHHHHHHHHHHHHhh
Q 000200 1639 SDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRG 1707 (1871)
Q Consensus 1639 ~eLvmKCLwK~tk~l~~~~~~ld~d~iL~~ih~Fl~~~p~~~wr~r~~~~D~PLRTvKTiLh~Lvk~~G 1707 (1871)
-.-||+|||+.-. +. ..+||+-|..- .+-..-||+|+|..|++ +|
T Consensus 5 E~~IM~~lW~~~~-~t-----------~~eI~~~l~~~-----------~~~~~sTv~t~L~rL~~-Kg 49 (115)
T PF03965_consen 5 ELEIMEILWESGE-AT-----------VREIHEALPEE-----------RSWAYSTVQTLLNRLVE-KG 49 (115)
T ss_dssp HHHHHHHHHHHSS-EE-----------HHHHHHHHCTT-----------SS--HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhCCC-CC-----------HHHHHHHHHhc-----------cccchhHHHHHHHHHHh-CC
Confidence 3469999998764 21 34566655441 23466899999999998 44
No 231
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.06 E-value=1.7e+02 Score=36.64 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=69.1
Q ss_pred hhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchH--HHHHHHHHHHhccCCC------C
Q 000200 936 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR--KDLFDWLSKQLTGLSG------F 1007 (1871)
Q Consensus 936 ~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r--~e~l~wL~~~l~~~~~------~ 1007 (1871)
.++--|.+.+-+.....|.+|++. ...-.|+..++|++..++.+.. .-... ...|.++.+.+..+-. .
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~s---L~tD~gl~~LlPyf~~fI~~~v-~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQS---LRTDPGLQQLLPYFVRFIAEGV-TVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH---hccCCCchhhhhHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 344455555555677778776554 5567899999998888876321 11122 5667776666554322 1
Q ss_pred cchhhhhhHHhhhc----CC------CCHHHHHHHHHHHHHHHHhcCHH
Q 000200 1008 PDAAHLLKPASIAM----TD------KSSDVRKAAEACIVEILRAGGQE 1046 (1871)
Q Consensus 1008 ~~~~~~~~p~~~~L----~D------r~~dVRkaA~~~L~~~m~~~G~~ 1046 (1871)
+-+..++.++++|| .+ ..-..|+-|..+|..++...|..
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 23455666788888 22 33489999999999999876543
No 232
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.80 E-value=1.5e+03 Score=31.02 Aligned_cols=199 Identities=14% Similarity=0.200 Sum_probs=112.6
Q ss_pred hhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcC---CCCCCcchhhhHHhHhhhhhhcc
Q 000200 175 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVS---GTARPTRKIRAEQDKELGQELIS 251 (1871)
Q Consensus 175 ~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~---~~~~P~R~~Rs~q~~~~~~~~~~ 251 (1871)
..+..+|-+||..|..|++++|--.||++-+.. +-..+|++|+-+. ..+-| -+||..-+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~--------mD~i~~kQf~~l~~LL~d~~p--~VRS~a~~-------- 242 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEE--------MDSIIQKQFEELYSLLEDPYP--MVRSTAIL-------- 242 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHH--------HHHHHHHHHHHHHHHhcCCCc--hHHHHHHH--------
Confidence 346889999999999999999999999853322 2244455554431 23334 25554321
Q ss_pred cCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHH
Q 000200 252 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 331 (1871)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lk 331 (1871)
=+.|.. +.||+.|-+. . ..+|+.-+-
T Consensus 243 -----------------------------gv~k~~-s~fWe~iP~~-------i-----------------~~~ll~kI~ 268 (1005)
T KOG1949|consen 243 -----------------------------GVCKIT-SKFWEMIPPT-------I-----------------LIDLLKKIT 268 (1005)
T ss_pred -----------------------------HHHHHH-HHHHHHcCHH-------H-----------------HHHHHHHHH
Confidence 011223 4676655332 1 112222222
Q ss_pred HHhc-cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH----HHhccCCHHHHHHHHHHHHHHHHhcCCChhhh--
Q 000200 332 KLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL----EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-- 404 (1871)
Q Consensus 332 k~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lL----eklKEKK~~V~eAl~~aLda~~~~~~~~l~~~-- 404 (1871)
.-+. |+-+-|-.-..++|..|+ |.|....++-.+| --+-|+-..||-|..+-|--+-..-..++.++
T Consensus 269 d~~a~dt~s~VR~svf~gl~~~l------~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~ 342 (1005)
T KOG1949|consen 269 DELAFDTSSDVRCSVFKGLPMIL------DNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICP 342 (1005)
T ss_pred HHhhhccchheehhHhcCcHHHH------cCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 2223 665555555667776665 3344444443333 34568888888888877776644322444444
Q ss_pred HHHHHHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCC
Q 000200 405 VEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 457 (1871)
Q Consensus 405 ~e~i~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds 457 (1871)
+|+++.-|..-+ |--|......+.-||.-..+. ..+++-+...++-.
T Consensus 343 ~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~e------e~~c~Rc~tlv~~n 390 (1005)
T KOG1949|consen 343 MDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPE------EVWCERCVTLVQMN 390 (1005)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcH------HHHHHHHHHHHccC
Confidence 477887787655 666767766667677544322 23566666666543
No 233
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.60 E-value=4.7e+02 Score=35.52 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc-hhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCC
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCL 399 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y-~~~~~~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~ 399 (1871)
-|..-+..|.+.|++--.|+--+|+..+..||.. .|..- ++--...++.-+| |+--+||.-+.+-|-++++. -
T Consensus 326 ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~ 400 (938)
T KOG1077|consen 326 LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--S 400 (938)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--h
Confidence 3677778888888877777888888888888876 44422 4555778889999 99999999888888888875 4
Q ss_pred ChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 400 NLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 400 ~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
.-.+++++++.++.+--+++|+|...=++
T Consensus 401 Nak~IV~elLqYL~tAd~sireeivlKvA 429 (938)
T KOG1077|consen 401 NAKQIVAELLQYLETADYSIREEIVLKVA 429 (938)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 67789999999999999999999876555
No 234
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=23.58 E-value=1.7e+02 Score=37.85 Aligned_cols=125 Identities=22% Similarity=0.168 Sum_probs=80.1
Q ss_pred HHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCC-hHHHHHHHHHHHHHHhhccCccchHHHHHhhh-ccCCh
Q 000200 1228 LLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN-IEKVREKMRELTKQIVNFYSATKTLPYILEGL-RSKNN 1305 (1871)
Q Consensus 1228 l~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~-k~~vR~~vr~i~~~~~~vyp~skvf~~l~~gl-ksKN~ 1305 (1871)
|.--|++|...++.-...=-.+.+|.+...-..|----=|- -.=-|+.++.+-+.= -+++..|.+-+ +|.++
T Consensus 295 L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~------~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 295 LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN------YELLKILIHLLETSVDP 368 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc------hHHHHHHHHHHhcCCCc
Confidence 34445666666655555555577888887776664322332 222345544443221 12233344444 46778
Q ss_pred hhHhHHHHHHHHHHHhh--cCcccCccchHHHHHHHhccCChhHHHHHHHHHHHH
Q 000200 1306 RTRIECVDLVGFLIDHH--GAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1358 (1871)
Q Consensus 1306 r~R~Ecl~el~~li~~~--G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~ 1358 (1871)
.+=+=++.-||.++..| |-.+....++=..|=.++++.|+.||.-||.|+...
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 88777778899999998 666655555557789999999999999999999844
No 235
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=23.26 E-value=3.9e+02 Score=32.36 Aligned_cols=84 Identities=12% Similarity=0.248 Sum_probs=58.1
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhh--ccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHH
Q 000200 1260 CLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL--RSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1871)
Q Consensus 1260 ~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~gl--ksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia 1337 (1871)
.|++-+++..--+|-.|--+|-|+..-. -.|+|.++| ..-|+=+|-||.+-||.+ ...++++.+-
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s~~----ai~~L~k~L~d~~E~pMVRhEaAeALGaI---------a~e~~~~vL~ 257 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQSPA----AIPSLIKVLLDETEHPMVRHEAAEALGAI---------ADEDCVEVLK 257 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccchh----hhHHHHHHHHhhhcchHHHHHHHHHHHhh---------cCHHHHHHHH
Confidence 4555555555555555544444443211 135555555 445688999999999986 6678999999
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000200 1338 SLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1871)
++.+|-++-||..+.-+|-
T Consensus 258 e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH
Confidence 9999999999998877665
No 236
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=22.79 E-value=1.5e+02 Score=35.09 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=65.3
Q ss_pred hhhhHhHHHHHHHHHHhcccc---chHHHHHHhh-----hhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCC-ChHHHH
Q 000200 1203 KDIIEVLDILLRWFVLQFCKS---NTTCLLKVLE-----FLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH-NIEKVR 1273 (1871)
Q Consensus 1203 ~~~i~~lDlllkw~tlr~~dt---N~~vl~k~Le-----~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd-~k~~vR 1273 (1871)
.+.|+| +==.|+|+|=|-. |...|+..=+ ||...+..|..++|.. |+ -| || |.-
T Consensus 104 rafICn--l~eHWF~iRKfg~qWfnlnSllagPellSdtyls~FL~qlq~egySI-------FV----Vk-G~lP~~--- 166 (315)
T KOG2935|consen 104 RAFICN--LKEHWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSI-------FV----VK-GDLPDC--- 166 (315)
T ss_pred hhhhhc--chhhhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeE-------EE----Ee-cCCCCc---
Confidence 344544 3448999976554 5555554433 6677788888888853 11 11 22 100
Q ss_pred HHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCccc
Q 000200 1274 EKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1327 (1871)
Q Consensus 1274 ~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~ 1327 (1871)
. -.-+=+++.|-+.+|+|+-= -.+.|--|.|.--++-++..=+..|.+|-
T Consensus 167 -e-adql~~m~~v~e~pk~~gkk--l~~qk~erV~k~~~~~v~~~n~~Sg~~~d 216 (315)
T KOG2935|consen 167 -E-ADQLLQMISVSEAPKLFGKK--LSPQKEERVRKTTLEGVSERNDGSGDNVD 216 (315)
T ss_pred -c-HhhhhcccccccCcccchhh--cchhHHHHHHHHHHHhHHhhcCCCCCCcc
Confidence 0 01223467778889999851 22567788999999999998788888763
No 237
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=22.68 E-value=3.5e+02 Score=27.03 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHhcChhHHhhhhhhh--HHHHHHhc-cCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcc
Q 000200 918 TLGAVASAMGPAVEKSSKGVL--SDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 983 (1871)
Q Consensus 918 ii~~lA~amG~~~~k~~k~l~--~~il~~l~-D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~ 983 (1871)
++..|+..+|+.+++.++.+. .+-+..+. |+-..+++.+.+.|..|...-|-+.-+..+..+|..-
T Consensus 4 ~f~~i~~~lG~~Wk~laR~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~ 72 (86)
T cd08306 4 AFDVICENVGRDWRKLARKLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDC 72 (86)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHc
Confidence 567789999999998887643 44455444 5666899999999999999999888888888888743
No 238
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.47 E-value=4.1e+02 Score=36.50 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=65.5
Q ss_pred hhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc--cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcc--cCccc
Q 000200 1256 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA--TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI--SGQLK 1331 (1871)
Q Consensus 1256 ~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~--skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v--~~~~K 1331 (1871)
.+|-+||+=.... .=..++..++.|=.+ .-+|..|=+-+. ++.+|..+|..+|++|.+...-+ ....-
T Consensus 39 ~l~~~l~~y~~~t------~s~~~~~il~~~~~P~~K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~ 110 (668)
T PF04388_consen 39 WLVNGLVDYYLST------NSQRALEILVGVQEPHDKHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTP 110 (668)
T ss_pred HHHHHHHHHHhhc------CcHHHHHHHHhcCCccHHHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcCh
Confidence 5556665544321 112344445555555 444444444453 56789999999999999988776 23344
Q ss_pred hHHHHHHHhc-cCChhHHHHHHHHHHHHHHH
Q 000200 1332 SLQIVASLTA-ERDGEIRKAALNTLATGYKI 1361 (1871)
Q Consensus 1332 al~~ia~~i~-drD~~VR~AALn~l~~~y~~ 1361 (1871)
.++.+-+++- |.|..|=.+||.||+.+-=+
T Consensus 111 Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 111 LFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 5678877776 99999999999999987443
No 239
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=22.37 E-value=2.7e+02 Score=27.20 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHh-cChhHHhhhhhhh--HHHHHHhccCch-hHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchH
Q 000200 915 TLITLGAVASA-MGPAVEKSSKGVL--SDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGR 990 (1871)
Q Consensus 915 al~ii~~lA~a-mG~~~~k~~k~l~--~~il~~l~D~K~-~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r 990 (1871)
....+..++.. +|+.+++.++.+. ..-+..+....+ .+++.+.+.|..|...-|-+.-+..+..+|..- +|
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~~~-----~~ 78 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQREGKNATLGTLLEALRKM-----GR 78 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHc-----Ch
Confidence 34566677887 8999998877654 455666666654 799999999999999998777788888888743 36
Q ss_pred HHHHHHH
Q 000200 991 KDLFDWL 997 (1871)
Q Consensus 991 ~e~l~wL 997 (1871)
.++..-+
T Consensus 79 ~d~a~~i 85 (88)
T smart00005 79 DDAVELL 85 (88)
T ss_pred HHHHHHH
Confidence 6665543
No 240
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.57 E-value=9e+02 Score=30.04 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHhcCCC---------hhhhH
Q 000200 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKAGCLN---------LVDVV 405 (1871)
Q Consensus 342 v~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKE-------KK~~V~eAl~~aLda~~~~~~~~---------l~~~~ 405 (1871)
....++|++.|.+.++..+.++...++..+++..-+ .=|..|.+.-+-|.++..+ |.+ +..++
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~-~f~~l~~lp~~~f~~~i 167 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEH-CFPALLQLPPEQFKLVI 167 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHH-HTHHHHHS-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHH-hHHHHHcCCHHHHHHHH
Confidence 345677788888888887777777777666665432 4577777777777777665 432 34667
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000200 406 EDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 406 e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+-|.-+++|.++.|-...+.-|...+.+..
T Consensus 168 dsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 168 DSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999998888887543
No 241
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=21.53 E-value=1.7e+03 Score=28.07 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCChHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000200 320 PGDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1871)
Q Consensus 320 ~~dy~eL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~ 398 (1871)
+.+--+++.++.+-+.+. |-.-..+.++++..|=+|+-+ -..+|..+-..+-.++.. |
T Consensus 79 ~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~--------------------~~~aR~~Vy~~lv~la~~-~ 137 (378)
T KOG2753|consen 79 PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDK--------------------PTPARYQVYMSLVTLAAS-C 137 (378)
T ss_pred HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCC--------------------CchHHHHHHHHHHHHHhh-c
Confidence 334455666555555533 333355666666666666543 223555555555555554 3
Q ss_pred CChhh---hHHHHHHHhhcCCchhHH--HHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 399 LNLVD---VVEDVKTSVKNKVPLVRS--LTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 399 ~~l~~---~~e~i~~al~~KnP~vk~--etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
--++. =++-+-..++.=|+.++. +.+.++++.+....+.. .-.|.++..|..--+|-..+.|+.|.+|+.+..
T Consensus 138 ~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~--~s~kvmt~lLgtyt~dnas~AredA~rcV~~av 215 (378)
T KOG2753|consen 138 KLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVD--ESSKVMTELLGTYTEDNASEAREDAMRCVVEAV 215 (378)
T ss_pred ceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhh--hHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 22222 245566677777876654 78889999998665422 122555566666667777999999999988776
Q ss_pred H
Q 000200 474 K 474 (1871)
Q Consensus 474 k 474 (1871)
+
T Consensus 216 ~ 216 (378)
T KOG2753|consen 216 K 216 (378)
T ss_pred c
Confidence 4
No 242
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.27 E-value=8.5e+02 Score=27.35 Aligned_cols=75 Identities=20% Similarity=0.084 Sum_probs=58.1
Q ss_pred HHHHhhhccCC-hhhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000200 1294 PYILEGLRSKN-NRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1871)
Q Consensus 1294 ~~l~~glksKN-~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ 1372 (1871)
+++.+=++|.| +..|+.++-.+....+ + ......|+.+..++.|.+.-||.|.=++|.+++...-+.+..|+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK--E---TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh--c---ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 55556678999 4567777776666555 1 1234568999999999999999999999999999988888888655
Q ss_pred C
Q 000200 1373 L 1373 (1871)
Q Consensus 1373 l 1373 (1871)
.
T Consensus 183 ~ 183 (197)
T cd06561 183 N 183 (197)
T ss_pred H
Confidence 4
No 243
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.17 E-value=1.4e+03 Score=32.01 Aligned_cols=178 Identities=20% Similarity=0.169 Sum_probs=106.1
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 371 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~l 371 (1871)
.+.++--=.|.-||..+..++..-+-.+- .-.-++......+.|-+--|-..|++-+..|+.- |=..++|.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 34445555677777777666653322221 1123566666777777777888888866677665 777889999
Q ss_pred HH-HhccCCHH-------HHHHHHHHHHHHHHhcCCChhh-hHHHHHHHhhcCCch--hHHHHHHHHHHHHhhCChhHHH
Q 000200 372 LE-KLKEKKPT-------VAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPL--VRSLTLNWVTFCIETSSKAAVL 440 (1871)
Q Consensus 372 Le-klKEKK~~-------V~eAl~~aLda~~~~~~~~l~~-~~e~i~~al~~KnP~--vk~etl~~L~r~l~~~~~~~~~ 440 (1871)
.| ..-+||.. |-||+.+.+.+.-.- |...-+ +..-...+.. -|. .|+.++.-+..|........-.
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel-~~~y~~~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL-VFKYKAVLINTFLSGVR--EPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 98 55555555 566666655554322 212122 2222223333 354 4888888887777543211111
Q ss_pred HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 441 ~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
-++..+.-++.-...|..+-||.||.-.+.-+..-.|++.
T Consensus 885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 1222222333344469999999999999999999999763
No 244
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=21.10 E-value=1.3e+02 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.3
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
.++.+++++...+++++..++.+|..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 688899999999999999999998765
No 245
>PF00945 Rhabdo_ncap: Rhabdovirus nucleocapsid protein; InterPro: IPR000448 The Nucleocapsid (N) Protein is said to have a 'tight' structure. The carboxyl end of the N-terminal domain possesses an RNA binding domain. Sequence alignments show 2 regions of reasonable conservation, approx. 64-103 and 201-329 []. A whole functional protein is required for encapsidation to take place [].; GO: 0019013 viral nucleocapsid; PDB: 3HHZ_O 3HHW_M 3PMK_C 3PU1_A 2WYY_L 3PTX_C 3PU0_C 3PU4_D 3PTO_C 2GIC_D ....
Probab=20.48 E-value=3e+02 Score=35.41 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=80.5
Q ss_pred cCHHHHHHHHHHHHHhcCCChhhhhHhHHHHHHHHHH--hcccc-chHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhh
Q 000200 1182 TDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVL--QFCKS-NTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFL 1258 (1871)
Q Consensus 1182 ~d~k~~l~al~~l~~~l~~~~~~~i~~lDlllkw~tl--r~~dt-N~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~fl 1258 (1871)
.||..-++|+||.-...+...-+. +||-|+ ||.|= --+.|.-..+++ +..+.|.=-=+|.
T Consensus 181 ~nf~klvAaiDMFf~kFk~h~~A~-------lR~GTi~sR~kDCaaL~sl~h~~~~~----------g~~~~e~~~Wif~ 243 (409)
T PF00945_consen 181 PNFCKLVAAIDMFFFKFKNHEYAK-------LRFGTIVSRFKDCAALTSLNHICKIT----------GLSIEEFLLWIFT 243 (409)
T ss_dssp HHHHHHHHHHHHHHHHSTTSTTGG-------GHHHHGGGTTTT-HHHHHHHHHHHHH----------T--HHHHHHT--S
T ss_pred hhHHHHHHHHHHHHHHcCcCCcce-------EEEEeeehhhccchHHHHHHHHHHHh----------CCCHHHhhheeee
Confidence 357788999999998888654433 488888 99884 222222222111 2112221112232
Q ss_pred hHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHh-hhccCCh--hhHhHHHHHHHHHHHhhcCcccCccchHHH
Q 000200 1259 PCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILE-GLRSKNN--RTRIECVDLVGFLIDHHGAEISGQLKSLQI 1335 (1871)
Q Consensus 1259 P~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~-glksKN~--r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ 1335 (1871)
+ .|.+.+..+++--..+--+--.|||+++ ||..|++ -+..-++--..++|--+..+..+..
T Consensus 244 ~-----------~va~e~~~m~~pgqE~d~~~SY~pY~~dlgLs~kSPYSa~~np~~h~~~h~ig~ll~s~RS~N----- 307 (409)
T PF00945_consen 244 K-----------SVADEVERMMKPGQEIDKPDSYMPYMIDLGLSNKSPYSATANPSLHTFVHMIGSLLGSERSIN----- 307 (409)
T ss_dssp H-----------HHHHHHHHHT-SSS-TTSSSSSGGGTTTTTS-SS-TTSTTTSHHHHHHHHHHHHHTT-SSGGG-----
T ss_pred H-----------HHHHHHHHHhcCccccccccchHHHHHhcCCccCCCcccccCchhhhHHHHHHHHccCchhcc-----
Confidence 2 2445566666655666667778999999 9988884 5566678888888866666542211
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHHhch
Q 000200 1336 VASLTAERDGEIRKAALNTLATGYKILGE 1364 (1871)
Q Consensus 1336 ia~~i~drD~~VR~AALn~l~~~y~~~Gd 1364 (1871)
|+++++ ++.-+--.|+...+|.+-+-
T Consensus 308 -Ar~~~~--~~~~~i~~nA~lvayv~~~~ 333 (409)
T PF00945_consen 308 -ARMIEE--NNISNIIANAALVAYVFGSR 333 (409)
T ss_dssp -SB--SS--S-HHHHHHHHHHHHHHHHHS
T ss_pred -ccccCC--cCHHHHHHHHHHHHHHHcCC
Confidence 345544 34445555556666655443
No 246
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=20.47 E-value=1.1e+03 Score=31.47 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000200 1313 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYK 1360 (1871)
Q Consensus 1313 ~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~ 1360 (1871)
.+-..++...-+..-|....+..+...+.+.|..||..|-.+....|.
T Consensus 126 ~~y~~l~~~~~~~~~Ge~~~l~~~~~~l~~~dr~~Rk~a~~a~~~~~~ 173 (549)
T TIGR02289 126 TKYREIISNISIIFEGEEKTLSQLKPYLQDPNRSTRKKAWYARSEFFA 173 (549)
T ss_pred HHHHHHHhccEEEECCEeccHHHhhHHhhCCCHHHHHHHHHHHHHHHh
Confidence 333444443333334556788899999999999999999988887665
No 247
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=1.3e+03 Score=34.48 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=61.3
Q ss_pred hHHHHHhhh-cc--CChhhHhHHHHHHHHHHHhhcCcc-cCccchHHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHH
Q 000200 1292 TLPYILEGL-RS--KNNRTRIECVDLVGFLIDHHGAEI-SGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIW 1367 (1871)
Q Consensus 1292 vf~~l~~gl-ks--KN~r~R~Ecl~el~~li~~~G~~v-~~~~Kal~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~ 1367 (1871)
.+||+-++| ++ -|.+.|-=.|..+..++++-|=++ ..-+..+|-+|.++.|-|-.|-..+=..+-++--..||..|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~ 1618 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQ 1618 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhh
Confidence 555655555 22 333556667778889999999887 34456789999999999999999988888888888999998
Q ss_pred HHh
Q 000200 1368 RYV 1370 (1871)
Q Consensus 1368 k~~ 1370 (1871)
.|+
T Consensus 1619 ~y~ 1621 (1621)
T KOG1837|consen 1619 SYL 1621 (1621)
T ss_pred hcC
Confidence 873
No 248
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=20.01 E-value=1.5e+03 Score=26.80 Aligned_cols=128 Identities=14% Similarity=0.157 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhh-
Q 000200 336 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK- 413 (1871)
Q Consensus 336 DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl-KEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~- 413 (1871)
|.+..+..-.+.++..+++.... |...+++.|-.-+ ++.-..++.-..++|..++.+..+.+-....-+..-|.
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~ 170 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSL 170 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCC
Confidence 44555555556777777777655 8888999999999 78888888888899999987644444444444444443
Q ss_pred cCCchhHHHHHHHHHHHHhhC--ChhHHHHhhhhhHHHHHhhhCCCCH-------HHHHHHHHH
Q 000200 414 NKVPLVRSLTLNWVTFCIETS--SKAAVLKVHKDYVPICMECLNDGTP-------EVRDAAFSV 468 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~--~~~~~~~~~k~~~~~l~k~l~Ds~~-------~VR~aA~~~ 468 (1871)
.+-|.+=.....|+. .+... +......+...++..+-+.....+. .||-+|+++
T Consensus 171 ~~rp~v~~~l~~l~~-l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 171 DYRPLVLKSLCSLFA-LVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred ccchHHHHHHHHHHH-HhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence 344777666666665 22221 2223334456678888888888884 455555443
Done!