Query 000200
Match_columns 1871
No_of_seqs 257 out of 413
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 00:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2of3_A ZYG-9; multifunctional 100.0 4.8E-64 1.6E-68 579.7 26.9 253 1134-1389 6-265 (266)
2 2qk1_A Protein STU2; STU2P, XM 100.0 1.7E-40 6E-45 384.7 27.7 231 270-502 2-248 (249)
3 4ffb_C Protein STU2; tubulin f 100.0 1.9E-39 6.6E-44 381.1 20.6 240 1-242 1-261 (278)
4 2qk2_A LP04448P; mini spindles 100.0 5.5E-33 1.9E-37 318.9 25.1 231 271-504 2-235 (242)
5 4ffb_C Protein STU2; tubulin f 100.0 2.5E-30 8.6E-35 303.6 12.0 226 602-831 12-259 (278)
6 2qk1_A Protein STU2; STU2P, XM 100.0 3.6E-29 1.2E-33 289.9 19.8 227 841-1070 4-249 (249)
7 2of3_A ZYG-9; multifunctional 100.0 2.5E-27 8.5E-32 273.9 23.5 218 592-816 37-264 (266)
8 2qk2_A LP04448P; mini spindles 99.9 8.9E-27 3.1E-31 267.3 21.5 228 842-1072 4-236 (242)
9 1u6g_C TIP120 protein, CAND1; 99.9 2.1E-22 7.1E-27 280.8 65.6 832 16-968 53-1038(1230)
10 1u6g_C TIP120 protein, CAND1; 99.9 1.6E-21 5.3E-26 272.0 61.0 610 289-1055 10-697 (1230)
11 1b3u_A Protein (protein phosph 99.9 1.3E-20 4.4E-25 240.4 38.6 554 289-1039 14-585 (588)
12 4fdd_A Transportin-1; heat rep 99.9 5.1E-18 1.7E-22 228.2 60.8 566 290-1065 220-848 (852)
13 2bpt_A Importin beta-1 subunit 99.9 6E-18 2.1E-22 225.9 58.2 704 20-968 104-860 (861)
14 2bpt_A Importin beta-1 subunit 99.9 2.5E-17 8.6E-22 219.9 60.7 726 22-1001 16-855 (861)
15 1qgr_A Protein (importin beta 99.8 1.3E-16 4.5E-21 213.5 58.6 619 289-1041 132-871 (876)
16 1b3u_A Protein (protein phosph 99.8 4.3E-18 1.5E-22 217.0 36.8 552 605-1357 14-584 (588)
17 4fdd_A Transportin-1; heat rep 99.8 4.4E-16 1.5E-20 209.4 57.2 595 289-1042 132-785 (852)
18 1qgr_A Protein (importin beta 99.8 2.9E-16 9.9E-21 210.1 48.0 651 290-1051 95-837 (876)
19 1ibr_B P95, importin beta-1 su 99.2 1.5E-08 5.1E-13 125.0 37.4 377 605-1045 5-441 (462)
20 2vgl_B AP-2 complex subunit be 99.0 5.1E-07 1.7E-11 116.8 40.8 177 288-477 16-192 (591)
21 1ibr_B P95, importin beta-1 su 99.0 3.1E-08 1.1E-12 122.1 27.6 396 290-809 6-460 (462)
22 2vgl_B AP-2 complex subunit be 98.8 4.9E-07 1.7E-11 117.0 29.8 386 605-1044 17-422 (591)
23 1wa5_B Importin alpha subunit; 98.7 9.7E-07 3.3E-11 112.2 24.7 376 289-788 91-510 (530)
24 2jdq_A Importin alpha-1 subuni 98.6 6.9E-07 2.3E-11 110.0 21.1 377 604-1040 23-442 (450)
25 1wa5_B Importin alpha subunit; 98.6 5.4E-07 1.8E-11 114.6 19.7 380 603-1044 89-513 (530)
26 2jdq_A Importin alpha-1 subuni 98.6 7.6E-06 2.6E-10 100.7 27.5 184 856-1041 23-221 (450)
27 4b8j_A Importin subunit alpha- 98.6 1.3E-06 4.5E-11 110.8 20.5 379 604-1042 77-497 (528)
28 4b8j_A Importin subunit alpha- 98.5 1.5E-05 5E-10 101.1 28.9 378 289-789 78-497 (528)
29 2iw3_A Elongation factor 3A; a 98.5 1.2E-06 4.2E-11 117.4 18.4 193 289-487 18-217 (986)
30 2x1g_F Cadmus; transport prote 98.5 0.00065 2.2E-08 92.7 44.9 263 732-1042 557-859 (971)
31 2z6g_A B-catenin; FULL-length, 98.4 0.0003 1E-08 94.1 39.0 497 322-1044 112-666 (780)
32 1w63_A Adapter-related protein 98.4 0.00036 1.2E-08 90.8 37.7 83 384-473 53-135 (618)
33 2x19_B Importin-13; nuclear tr 98.3 0.045 1.5E-06 74.4 62.5 277 698-1046 423-719 (963)
34 2z6g_A B-catenin; FULL-length, 98.3 0.00036 1.2E-08 93.2 34.0 518 289-968 119-666 (780)
35 3ltm_A Alpha-REP4; protein eng 98.2 1.6E-05 5.4E-10 88.3 17.1 186 757-1041 18-203 (211)
36 3ltm_A Alpha-REP4; protein eng 98.2 2.1E-05 7.1E-10 87.3 17.8 179 288-502 22-200 (211)
37 3ltj_A Alpharep-4; protein eng 98.2 2.3E-05 7.9E-10 86.3 17.7 178 288-501 17-194 (201)
38 2x19_B Importin-13; nuclear tr 98.2 0.03 1E-06 76.2 51.5 347 654-1052 460-858 (963)
39 2z6h_A Catenin beta-1, beta-ca 98.2 0.0021 7.1E-08 83.8 38.3 154 316-474 9-169 (644)
40 1jdh_A Beta-catenin; beta-cate 98.2 0.011 3.6E-07 74.3 43.2 146 326-473 18-171 (529)
41 1wa5_C Importin alpha RE-expor 98.1 0.0085 2.9E-07 81.8 42.6 284 717-1054 455-761 (960)
42 3ltj_A Alpharep-4; protein eng 98.1 5.2E-05 1.8E-09 83.4 16.7 182 853-1069 14-195 (201)
43 1w63_A Adapter-related protein 98.1 0.00012 4E-09 95.4 22.7 397 604-1041 37-451 (618)
44 2x1g_F Cadmus; transport prote 98.0 0.0057 1.9E-07 83.4 39.2 237 649-946 359-638 (971)
45 1wa5_C Importin alpha RE-expor 98.0 0.1 3.5E-06 71.1 50.9 283 656-964 471-790 (960)
46 1oyz_A Hypothetical protein YI 98.0 0.00021 7.3E-09 82.7 20.8 229 686-981 25-262 (280)
47 2vgl_A Adaptor protein complex 97.8 0.027 9.2E-07 73.3 37.9 102 364-472 33-138 (621)
48 1jdh_A Beta-catenin; beta-cate 97.8 0.015 5E-07 73.0 34.0 182 857-1041 63-256 (529)
49 3ul1_B Importin subunit alpha- 97.8 0.00087 3E-08 85.0 22.4 371 604-1039 60-476 (510)
50 1oyz_A Hypothetical protein YI 97.8 0.00057 2E-08 79.1 18.6 162 289-473 58-220 (280)
51 3tpo_A Importin subunit alpha- 97.7 0.0029 9.8E-08 80.6 26.2 375 604-1039 79-495 (529)
52 4db6_A Armadillo repeat protei 97.7 0.00019 6.7E-09 79.0 13.2 183 289-473 16-208 (210)
53 2iw3_A Elongation factor 3A; a 97.7 0.0012 4.2E-08 88.8 22.5 272 719-1060 16-300 (986)
54 2vgl_A Adaptor protein complex 97.7 0.0053 1.8E-07 80.0 28.0 396 10-472 145-587 (621)
55 4db8_A Armadillo-repeat protei 97.6 0.00043 1.5E-08 78.4 14.7 183 288-473 15-208 (252)
56 2z6h_A Catenin beta-1, beta-ca 97.6 0.017 5.7E-07 75.3 30.8 383 16-477 103-530 (644)
57 3tpo_A Importin subunit alpha- 97.6 0.03 1E-06 71.2 32.0 373 289-785 80-494 (529)
58 3now_A UNC-45 protein, SD10334 97.5 0.25 8.7E-06 65.7 40.8 598 302-1041 25-737 (810)
59 4hxt_A De novo protein OR329; 97.5 0.00099 3.4E-08 74.8 15.0 182 289-474 6-199 (252)
60 3now_A UNC-45 protein, SD10334 97.5 0.0091 3.1E-07 79.4 26.0 418 18-475 297-783 (810)
61 2db0_A 253AA long hypothetical 97.4 0.0064 2.2E-07 65.8 19.1 208 280-501 24-242 (253)
62 1xqr_A HSPBP1 protein; armadil 97.3 0.00091 3.1E-08 79.2 12.5 171 300-475 55-239 (296)
63 4db8_A Armadillo-repeat protei 97.3 0.00064 2.2E-08 77.0 10.6 183 289-473 58-250 (252)
64 4db6_A Armadillo repeat protei 97.3 0.0048 1.6E-07 67.8 16.8 151 322-474 9-167 (210)
65 4hxt_A De novo protein OR329; 97.2 0.0045 1.5E-07 69.4 16.6 186 289-478 48-245 (252)
66 3ul1_B Importin subunit alpha- 97.2 0.0011 3.8E-08 84.1 12.9 304 720-1042 103-431 (510)
67 3m1i_C Exportin-1; heat repeat 97.1 1.7 5.8E-05 59.9 42.3 382 64-501 207-646 (1049)
68 1xqr_A HSPBP1 protein; armadil 96.4 0.03 1E-06 66.3 15.1 167 868-1042 55-239 (296)
69 3ibv_A Exportin-T; karyopherin 96.3 6.2 0.00021 54.0 46.5 293 697-1022 458-794 (980)
70 1vsy_5 Proteasome activator BL 96.3 1.3 4.6E-05 60.4 32.1 173 300-480 148-371 (997)
71 3b2a_A TON_1937, putative unch 95.9 0.12 4.1E-06 58.4 15.8 174 289-468 79-255 (265)
72 1te4_A Conserved protein MTH18 95.5 0.019 6.6E-07 58.9 6.9 117 327-471 14-130 (131)
73 3b2a_A TON_1937, putative unch 95.2 0.23 7.7E-06 56.2 14.4 180 858-1041 38-218 (265)
74 2db0_A 253AA long hypothetical 95.1 0.14 4.8E-06 55.6 12.1 168 854-1040 33-209 (253)
75 1vsy_5 Proteasome activator BL 95.0 0.27 9.2E-06 67.1 17.6 141 56-199 512-666 (997)
76 3m1i_C Exportin-1; heat repeat 94.9 18 0.00062 49.7 58.7 173 296-477 27-227 (1049)
77 4hat_C Exportin-1; heat repeat 94.6 2.4 8.2E-05 58.3 25.4 383 328-791 454-881 (1023)
78 3ldz_A STAM-1, signal transduc 94.6 0.17 5.8E-06 53.3 11.0 109 862-979 18-128 (140)
79 3ibv_A Exportin-T; karyopherin 94.5 22 0.00076 48.6 43.8 169 298-477 21-225 (980)
80 1te4_A Conserved protein MTH18 94.1 0.12 4E-06 53.0 8.4 86 1258-1356 44-129 (131)
81 1x5b_A Signal transducing adap 94.0 0.2 6.8E-06 54.1 10.4 108 862-978 28-138 (163)
82 1mhq_A ADP-ribosylation factor 93.7 0.34 1.2E-05 51.5 11.2 112 861-981 13-132 (148)
83 3g2s_A C-terminal fragment of 93.5 0.38 1.3E-05 51.2 11.2 101 862-971 24-132 (149)
84 1juq_A ADP-ribosylation factor 92.9 0.22 7.4E-06 54.2 8.4 111 862-981 26-144 (171)
85 1elk_A Target of MYB1; superhe 92.2 0.42 1.5E-05 51.2 9.4 110 862-980 29-145 (157)
86 3rru_A TOM1L1 protein; structu 92.2 0.31 1.1E-05 52.0 8.2 110 862-980 29-145 (152)
87 1dvp_A HRS, hepatocyte growth 91.6 0.32 1.1E-05 55.0 8.0 100 861-969 17-119 (220)
88 3tjz_B Coatomer subunit gamma; 91.1 0.87 3E-05 55.1 11.6 144 1219-1372 33-180 (355)
89 3nmw_A APC variant protein; AR 90.9 1.7 5.8E-05 52.5 14.0 187 289-478 131-338 (354)
90 3l6x_A Catenin delta-1; cateni 90.6 30 0.001 44.5 25.7 370 637-1043 48-478 (584)
91 4hat_C Exportin-1; heat repeat 90.6 37 0.0013 46.7 28.1 157 338-500 660-854 (1023)
92 3zyq_A Hepatocyte growth facto 90.3 1.5 5E-05 49.8 11.9 109 862-979 21-132 (226)
93 3oc3_A Helicase MOT1, MOT1; re 89.5 1.4 4.8E-05 55.3 11.3 150 288-473 177-327 (800)
94 3tjz_B Coatomer subunit gamma; 88.8 7.1 0.00024 47.1 17.0 187 270-472 16-203 (355)
95 3nmz_A APC variant protein; pr 88.5 4 0.00014 51.1 14.9 184 289-475 247-451 (458)
96 1lrv_A LRV, leucine-rich repea 88.3 0.53 1.8E-05 54.0 6.4 187 723-1037 55-242 (244)
97 3nmw_A APC variant protein; AR 88.3 5.9 0.0002 47.8 15.9 169 301-473 100-291 (354)
98 3gs3_A Symplekin, LD45768P; he 87.1 27 0.00093 40.2 19.6 127 300-432 30-173 (257)
99 1mhq_A ADP-ribosylation factor 86.4 2.4 8.4E-05 44.9 9.7 96 294-396 14-117 (148)
100 3nmz_A APC variant protein; pr 86.3 7.7 0.00026 48.5 15.7 170 302-473 217-407 (458)
101 3g2s_A C-terminal fragment of 86.0 3.2 0.00011 44.0 10.3 96 294-396 24-127 (149)
102 3ldz_A STAM-1, signal transduc 85.4 2.2 7.6E-05 44.7 8.7 96 294-396 18-115 (140)
103 3o2t_A Symplekin; heat repeat, 85.1 26 0.00088 42.8 18.9 127 300-432 40-183 (386)
104 3a6p_A Exportin-5; exportin-5, 85.0 1.4E+02 0.0049 41.6 38.2 225 698-973 439-705 (1204)
105 1juq_A ADP-ribosylation factor 85.0 2.5 8.6E-05 45.9 9.1 96 294-396 26-129 (171)
106 4gmo_A Putative uncharacterize 84.5 2.1 7.3E-05 56.1 10.0 87 290-376 39-129 (684)
107 3opb_A SWI5-dependent HO expre 82.8 1.4E+02 0.0047 39.7 31.5 301 715-1041 290-635 (778)
108 1x5b_A Signal transducing adap 82.3 4.9 0.00017 43.3 9.9 96 294-396 28-126 (163)
109 3opb_A SWI5-dependent HO expre 81.6 13 0.00043 49.2 15.2 171 301-474 517-728 (778)
110 4ady_A RPN2, 26S proteasome re 79.8 11 0.00036 51.0 13.8 33 446-478 648-680 (963)
111 1xm9_A Plakophilin 1; armadill 79.5 12 0.00042 46.3 13.7 178 289-472 6-218 (457)
112 3zyq_A Hepatocyte growth facto 77.1 4.7 0.00016 45.6 8.1 77 125-201 42-122 (226)
113 1elk_A Target of MYB1; superhe 77.0 4.4 0.00015 43.3 7.4 96 294-396 29-131 (157)
114 4ady_A RPN2, 26S proteasome re 75.1 1.1E+02 0.0037 41.6 21.2 258 731-1038 450-716 (963)
115 1xm9_A Plakophilin 1; armadill 74.9 13 0.00045 46.1 12.1 142 328-474 5-172 (457)
116 3o2t_A Symplekin; heat repeat, 73.6 17 0.00057 44.4 12.0 91 380-475 40-130 (386)
117 3l6x_A Catenin delta-1; cateni 73.2 35 0.0012 43.8 15.6 156 325-486 308-485 (584)
118 3a6p_A Exportin-5; exportin-5, 73.2 3E+02 0.01 38.4 44.2 378 687-1071 252-736 (1204)
119 3gs3_A Symplekin, LD45768P; he 72.9 20 0.00067 41.4 11.9 92 380-476 30-121 (257)
120 3gjx_A Exportin-1; transport, 72.3 3E+02 0.01 38.0 27.3 156 339-500 687-880 (1073)
121 1lrv_A LRV, leucine-rich repea 71.4 8.1 0.00028 44.2 8.2 137 724-960 104-241 (244)
122 1dvp_A HRS, hepatocyte growth 71.0 15 0.0005 41.3 10.2 95 294-395 18-115 (220)
123 3tt9_A Plakophilin-2; cell adh 66.6 52 0.0018 37.2 13.5 143 327-473 10-179 (233)
124 3rru_A TOM1L1 protein; structu 60.9 9.1 0.00031 40.7 5.5 97 293-396 28-131 (152)
125 3oc3_A Helicase MOT1, MOT1; re 59.7 58 0.002 41.5 12.7 148 602-786 175-326 (800)
126 1vdy_A Hypothetical protein (R 58.8 8.9 0.00031 40.2 4.9 73 323-396 47-131 (140)
127 3u0r_A Apoptosis inhibitor 5; 58.3 39 0.0013 42.2 11.0 126 325-459 65-191 (507)
128 4gmo_A Putative uncharacterize 57.3 17 0.00059 47.5 8.5 74 408-483 39-114 (684)
129 3gjx_A Exportin-1; transport, 54.3 5.9E+02 0.02 35.1 29.7 175 327-501 479-672 (1073)
130 4atg_A TAF6; transcription, TF 49.5 1.2E+02 0.0041 33.5 12.2 128 289-432 11-141 (196)
131 1vdy_A Hypothetical protein (R 49.5 31 0.001 36.2 7.1 17 456-472 112-128 (140)
132 3l9t_A Putative uncharacterize 47.4 1.4E+02 0.0048 33.9 12.5 149 323-486 69-218 (240)
133 3grl_A General vesicular trans 45.9 1.7E+02 0.0058 38.0 14.4 165 289-474 25-195 (651)
134 3tt9_A Plakophilin-2; cell adh 41.2 54 0.0019 37.1 8.1 70 404-474 9-81 (233)
135 4atg_A TAF6; transcription, TF 29.1 2.9E+02 0.0099 30.5 11.1 90 387-478 26-123 (196)
136 3rjo_A Endoplasmic reticulum a 28.4 8E+02 0.027 29.6 16.4 104 300-408 106-219 (419)
137 2f31_A Diaphanous protein homo 27.9 69 0.0024 36.0 6.2 91 699-791 30-128 (233)
138 3d9j_A RNA-binding protein 16; 27.3 2.6E+02 0.0088 29.2 9.9 118 368-486 7-133 (145)
139 1wxp_A THO complex subunit 1; 24.3 1.3E+02 0.0044 30.0 6.6 78 917-999 19-98 (110)
140 2nsz_A Programmed cell death p 23.0 3.1E+02 0.011 27.9 9.4 87 341-433 22-115 (129)
141 3u0r_A Apoptosis inhibitor 5; 22.5 5.6E+02 0.019 32.1 12.9 141 322-481 30-170 (507)
142 2ion_A PDCD4, programmed cell 22.4 3E+02 0.01 28.9 9.4 87 341-433 24-117 (152)
143 2f31_A Diaphanous protein homo 22.2 45 0.0016 37.6 3.2 60 142-201 68-129 (233)
144 2rg8_A Programmed cell death p 20.7 2.7E+02 0.0094 29.6 8.8 86 341-433 25-116 (165)
145 1ug3_A EIF4GI, eukaryotic prot 20.4 4.5E+02 0.015 31.1 11.5 132 342-485 27-164 (339)
146 1sz9_A PCF11 protein; RNA poly 20.1 3.9E+02 0.013 27.8 9.6 97 402-503 42-138 (144)
No 1
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=100.00 E-value=4.8e-64 Score=579.72 Aligned_cols=253 Identities=28% Similarity=0.568 Sum_probs=246.5
Q ss_pred cCCCChHHHHh----hhhccccccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhhHhH
Q 000200 1134 VKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1209 (1871)
Q Consensus 1134 ~~~~~K~~R~~----~~~~kw~f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i~~l 1209 (1871)
..+++|++|++ ++++||+|++||+|+|++|++||.+|++++++.+|||+|||+|++|+|+|++.++++.+++++++
T Consensus 6 ~~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~l 85 (266)
T 2of3_A 6 SDNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNS 85 (266)
T ss_dssp CCSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred ecCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHH
Confidence 34789999984 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc
Q 000200 1210 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1289 (1871)
Q Consensus 1210 Dlllkw~tlr~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~ 1289 (1871)
|++|||+++||||+|++|++++||+|.++|++|.+.+|+|+||||++|||+||+|+||+||.||+.+|+|+++++.+||+
T Consensus 86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~ 165 (266)
T 2of3_A 86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP 165 (266)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchH---HHHHHHhccCChhHHHHHHHHHHHHHHHhchhH
Q 000200 1290 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKILGEDI 1366 (1871)
Q Consensus 1290 skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal---~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v 1366 (1871)
+++|+|+++|++|||||||.|||+||+++|++||+. +.|++ +.||++++|||++||+|||||++++|.++||+|
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999996 67899 999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHhhHHHHHHHhH
Q 000200 1367 WRYVGKLTDAQKSMLDDRFKWKV 1389 (1871)
Q Consensus 1367 ~k~~g~ls~k~~s~Leer~kr~~ 1389 (1871)
|+++|+|++++++||||||||++
T Consensus 243 ~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 243 WKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999975
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=384.66 Aligned_cols=231 Identities=25% Similarity=0.440 Sum_probs=219.8
Q ss_pred CCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHH-hh-hcCCCC--CCChHHHHHHHHHHh-ccccHHHHHH
Q 000200 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 344 (1871)
Q Consensus 270 iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~-l~-~~pKi~--~~dy~eL~~~Lkk~l-~DsNv~vv~~ 344 (1871)
.|||||+|||||++|||+ +|++.+.|+||+||++||++|.. ++ +.+++. .++|+++++.|+++| .|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~~-~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT-THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCCh-hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 489999999999999995 99999999999999999999999 87 689998 789999999999999 5999999999
Q ss_pred HHHHHHHHHHHhc-cccc-cchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC------CChhhhHHHHHHHhhcCC
Q 000200 345 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 416 (1871)
Q Consensus 345 A~~~i~~lA~gLr-~~F~-~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~------~~l~~~~e~i~~al~~Kn 416 (1871)
|++|++.||+||| +.|. +|+..++|+||++|||||+.|++++..||++|+.+ + ..|+++++++..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999997 4 339999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCh--hHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHH
Q 000200 417 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 493 (1871)
Q Consensus 417 P~vk~etl~~L~r~l~~~~~--~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk 493 (1871)
|++|.+++.||.+++...+. ..+.+.+ +.++|.+.++++|++++||++|.++|+++++++|++.+.+++.+||+.||
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998765 4566788 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000200 494 NKLSEMIAG 502 (1871)
Q Consensus 494 ~KI~e~~~~ 502 (1871)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999986
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-39 Score=381.06 Aligned_cols=240 Identities=24% Similarity=0.357 Sum_probs=187.6
Q ss_pred CChhHhhHhhhcCCCcccccCcCchhHHHHHHHHHHHHhhhcCCC--Cc---hhhhhhhhchhhhcCCCCHHHHHHHHHH
Q 000200 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KD---NRIRELGPLFKKTVADSNAPVQDKALDA 75 (1871)
Q Consensus 1 m~~~~~~~~~~~~lpl~erl~hK~WKaRl~ayeel~~~f~~~~d~--~d---~~~~~~~~l~kk~v~DsN~~aqek~lea 75 (1871)
|++||+ .||++|||+|||.|||||+|++|||+|.+.|+..... +| ..|..+..+++|++.|+|++||++++++
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 887554 5899999999999999999999999999999754322 22 2467778899999999999999999999
Q ss_pred HHHHHHHcChhh------hhhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch-hhHHHHHHHHhhccCchhHHH
Q 000200 76 LIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-DVFLDVMEKAIKNKVAKAVVP 147 (1871)
Q Consensus 76 l~~~l~~a~~~~------~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~-~~v~e~ll~~~~~K~PKvvaa 147 (1871)
+..|+..++... ...+..+++.|++|||+ +|+++++.|.++++.++|.... +.+++.++++++|||||++++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~ 158 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAA 158 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHH
T ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHH
Confidence 999998765432 12356789999999997 6999999999999999998764 788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCccChhH----HHhhchhhhcccChhHHHHHHHHHHHHHHhhCCc--hhhHHHhhhchHHHHHHHH
Q 000200 148 AIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD--PVKTILFEKMRDTMKKELE 221 (1871)
Q Consensus 148 ai~~l~~~l~~FG~~vv~~K~----ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~--~lk~~L~~~Lkp~q~keLe 221 (1871)
|+.||.++|++||++++++++ +++.++++|+|+|++||++|++++++||+|+|+. .+...++++|||+|+++||
T Consensus 159 ~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le 238 (278)
T 4ffb_C 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLH 238 (278)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHH
Confidence 999999999999999998775 6778999999999999999999999999999964 2334567999999999999
Q ss_pred HHHHhcCCCCCC--cchhhhHHh
Q 000200 222 VELVNVSGTARP--TRKIRAEQD 242 (1871)
Q Consensus 222 ~efek~~~~~~P--~R~~Rs~q~ 242 (1871)
++|+|+.+.++| +|+.+.+++
T Consensus 239 ~~f~k~~~~~~~~~~~~~~~~~~ 261 (278)
T 4ffb_C 239 KLFAKVGDEPSSSKMLFEWEKRE 261 (278)
T ss_dssp HHHSCCCC-------CCHHHHHH
T ss_pred HHHHhcCCCCCCCCcchhhhHhh
Confidence 999999876544 444444333
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-33 Score=318.95 Aligned_cols=231 Identities=29% Similarity=0.467 Sum_probs=218.0
Q ss_pred CccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHH
Q 000200 271 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 348 (1871)
Q Consensus 271 Dp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~ 348 (1871)
|||||++||||+++|| ++|++.+.|++|++|++|++.|..+++. +++..++|+++++.|++++. |+|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 8999999999999999 5899999999999999999999998865 88888899999999999996 9999999999999
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 349 i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
++.||+++|+.|.+|...++|+++++|+|+|+.||+++..||++++.. .+++.+++.+..+++|+||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 789999999999999999999999999999
Q ss_pred HHHhhCChh-HHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCC
Q 000200 429 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 504 (1871)
Q Consensus 429 r~l~~~~~~-~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~ 504 (1871)
+++....+. .....+..++|.++++++|++++||++|.++|+.+++.+|++.+.+++.+||+.++++|+++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999887543 2345668899999999999999999999999999999999999999999999999999999998753
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-30 Score=303.64 Aligned_cols=226 Identities=16% Similarity=0.197 Sum_probs=170.3
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc----CCCccchHHHHHHHHHHHHHHHHhcCC-
Q 000200 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML----PGWSEKNVQVQQQVIEVINYLAATATK- 676 (1871)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~----PgwkesNfqV~~~~leil~~la~~~~~- 676 (1871)
+| +.++|.|++||+|++|||++.+.++.........+.+..+.... ..++|+|++|++++++++..++..+..
T Consensus 12 lp--l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP--LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC--HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC--HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 55 66899999999999999999999987433222212211111111 235799999999999999999976432
Q ss_pred -----CCccchhhhccchhhc-cccch--hhhHHHHHHHHHHHhhch-HhHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 000200 677 -----FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 747 (1871)
Q Consensus 677 -----fs~~~~~~~l~~lveK-lgD~K--~r~~a~e~L~~~aE~~~~-~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~ 747 (1871)
++..++..+++++++| +||.| +|+.+.++|+.++|...+ ..+++.+..+ .+|||||++++|+.||..+|.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPF-FEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHH
Confidence 2345678899999999 79976 789999999999998765 6667777766 589999999999999999999
Q ss_pred HhccCccchHhHHH----HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchh----HhhhhcchHHHHHHHHHHHhcCCCC
Q 000200 748 DFGVSHLKLKDLID----FCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFE 819 (1871)
Q Consensus 748 eFG~~~~~~K~li~----~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l----~~~l~dlkpall~~ie~EF~K~~~~ 819 (1871)
+||+..+++++.++ ++.++ |+++|+.||++|++++++||+|+|+.+ .+||+++||+++++|+++|+|++++
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-
T ss_pred HhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 99999999876544 56776 999999999999999999999999876 4688999999999999999999998
Q ss_pred CCCCCccccccc
Q 000200 820 GTVVPKKTVRAS 831 (1871)
Q Consensus 820 ~~p~p~R~~r~~ 831 (1871)
+||+|+|+.+.+
T Consensus 248 ~~~~~~~~~~~~ 259 (278)
T 4ffb_C 248 PSSSKMLFEWEK 259 (278)
T ss_dssp ------CCHHHH
T ss_pred CCCCCcchhhhH
Confidence 888887765543
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-29 Score=289.87 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH-HHHHcccCCC--CCCccchHHHHhhhc-cchhHhHHHHHH
Q 000200 841 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 916 (1871)
Q Consensus 841 ~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~-il~~ankrI~--p~~~geL~~aLk~rl-~DsNk~lv~~al 916 (1871)
..|++|+|||+++||++|...+.++||++|+||+++|.. +++. +++|. ...|++++.+|++.| +|+|.+|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999 9975 58888 456899999999999 899999999999
Q ss_pred HHHHHHHHhcC-hhHH-hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc------c-chhhhHHHHHHHhcccCCc
Q 000200 917 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 987 (1871)
Q Consensus 917 ~ii~~lA~amG-~~~~-k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~------g-l~~~~~~i~~~L~~~~~~p 987 (1871)
++++.||+++| +.|. +|...++|+++++|+|+|+.||+++..||+++++.+ + ++.+++.+..+|.++ ||
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 999999999999976 69
Q ss_pred chHHHHHHHHHHHhccCCCC-----cch-hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHH
Q 000200 988 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1061 (1871)
Q Consensus 988 ~~r~e~l~wL~~~l~~~~~~-----~~~-~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~ 1061 (1871)
..|.+++.||.+.+...+.. +.+ ..++..+..+|.|.+++||++|.++|+.+++++|.+.|.+++.+|++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887653 234 556666888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000200 1062 LILERIKLN 1070 (1871)
Q Consensus 1062 ~i~~~l~ka 1070 (1871)
+|.++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999975
No 7
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.95 E-value=2.5e-27 Score=273.95 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=198.4
Q ss_pred HHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh-hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 592 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 592 ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
|++.+++...+++++..+|+|++||.|++|++.|.+.+++ .++.....|++++|+.. ++.|+|++|++++|+++.++
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999987 55666778999999974 57899999999999999998
Q ss_pred HHhc----CCCCccchhhhccchhhccccch--hhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000200 671 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 744 (1871)
Q Consensus 671 a~~~----~~fs~~~~~~~l~~lveKlgD~K--~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ 744 (1871)
+++. ..++...+..++|.++||+||.| +|+.++++|..+++.++|++|+++++++ ++|||+|++.|||.||.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g-~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA-LKSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG-GGCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 7654 35788888999999999999998 9999999999999999999999999997 599999999999999999
Q ss_pred HHHHhccCccchHhHH---HHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC
Q 000200 745 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 816 (1871)
Q Consensus 745 ai~eFG~~~~~~K~li---~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~ 816 (1871)
+|+.||.. ..+ .+ +.+-++ ++++|++||++|+++++++|+++|+.++.++++++|+.+++||+.|.+.
T Consensus 194 li~~~G~~--~~~-~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--PLK-SLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--GGG-GGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--ccc-cccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999997 334 56 777777 9999999999999999999999999999999999999999999999864
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=8.9e-27 Score=267.33 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=210.6
Q ss_pred CCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc-cchhHhHHHHHHHHHH
Q 000200 842 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLG 920 (1871)
Q Consensus 842 ~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl-~DsNk~lv~~al~ii~ 920 (1871)
.|++|++||+++|+++|++.+.|++|++|++|++.+..+++.. +.+....+++++.+|+++| +|+|.+|...|+++++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999863 4555556799999999999 5999999999999999
Q ss_pred HHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHH
Q 000200 921 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1000 (1871)
Q Consensus 921 ~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~ 1000 (1871)
.+|.++|+.|.+|...++|.++.+|+|+|+.||+++..||++++..++++.+++.+...|.++ ||..|.+++.||.+.
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 799999999999998
Q ss_pred hccCCC----CcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhccC
Q 000200 1001 LTGLSG----FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1072 (1871)
Q Consensus 1001 l~~~~~----~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~~ 1072 (1871)
+..... .+.+..++..++.+|+|++++||++|.++|+.++.++|.+.+.+.+.+|++..+++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 877642 123456666788999999999999999999999999999999999999999999999999999864
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.94 E-value=2.1e-22 Score=280.81 Aligned_cols=832 Identities=16% Similarity=0.155 Sum_probs=514.6
Q ss_pred cccccCcCchhHHHHHHHHHHHHhh----------------hcCCCCchh----------------------------hh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCD----------------SITDPKDNR----------------------------IR 51 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~----------------~~~d~~d~~----------------------------~~ 51 (1871)
|-+.|.|++|+.|..|...+...+. .+.|++... +.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 6777889999999999877765542 122333211 11
Q ss_pred hhhhchhhhcCC-CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch---
Q 000200 52 ELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV--- 126 (1871)
Q Consensus 52 ~~~~l~kk~v~D-sN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~--- 126 (1871)
...+.+-..+.| .|..+++.+++++..+++..+.....+...+++.+.. +|. ..+..+..|..++-.+++.-..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~~~~ 211 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNIVF 211 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC----C
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 111112234564 8899999999999999887554333344556655543 455 4788999999999999876332
Q ss_pred hhHHHHHHHHhhccC-chhHHHHHHHHHHHHHhhCCCccC-hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchh
Q 000200 127 DVFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 204 (1871)
Q Consensus 127 ~~v~e~ll~~~~~K~-PKvvaaai~~l~~~l~~FG~~vv~-~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~l 204 (1871)
+.++..++..+.+.. +.+...++.++..++..+|....+ +..++..+-..+.+.|..||..+...+..+.+..|.+ +
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~ 290 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-V 290 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-H
Confidence 356777777776543 678888899999999988864333 5678888888899999999999999999999999975 5
Q ss_pred hHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCC
Q 000200 205 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 284 (1871)
Q Consensus 205 k~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~k 284 (1871)
.+++ ..+-|..++- +.. .|. + ..... . . .++.. +... ..++.|.+
T Consensus 291 ~~~l-~~li~~ll~~-------l~~--d~~-~-~~~~d-----~---~-~~~~~--~~~~-~~~~~~~~----------- 335 (1230)
T 1u6g_C 291 YPHV-STIINICLKY-------LTY--DPN-Y-NYDDE-----D---E-DENAM--DADG-GDDDDQGS----------- 335 (1230)
T ss_dssp HHHH-HHHHHHHTTC-------CCC--C----------------------------------------------------
T ss_pred HHhH-HHHHHHHHHH-------hCC--CCC-C-CCccc-----c---c-ccccc--cccc-cccchhhc-----------
Confidence 5554 5555544322 211 111 1 00000 0 0 00000 0000 00000100
Q ss_pred CCchhhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc-----
Q 000200 285 LEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT----- 358 (1871)
Q Consensus 285 lpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~----- 358 (1871)
.+.|..-.+..|+.|+.|++.|..+... +.....-|.+++..|...+.|.+-.|...+++++..+.+.++.
T Consensus 336 ---~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 412 (1230)
T 1u6g_C 336 ---DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL 412 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred ---ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc
Confidence 0122233567899999999999887752 2111223567778888888899999999999999999987753
Q ss_pred --------------ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC-----ChhhhHHHHHHHhhcCCc--
Q 000200 359 --------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL-----NLVDVVEDVKTSVKNKVP-- 417 (1871)
Q Consensus 359 --------------~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~-----~l~~~~e~i~~al~~KnP-- 417 (1871)
.+..|...+++.++..++|....||.++..+|..++.. +- .++.+++.+...|+++++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~ 491 (1230)
T 1u6g_C 413 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSS 491 (1230)
T ss_dssp --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCH
T ss_pred cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcc
Confidence 34667788888888889999999999999999999875 21 256778888899999886
Q ss_pred hhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh------hHHHHHhhcC---
Q 000200 418 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKL--- 488 (1871)
Q Consensus 418 ~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge------~~l~~~l~~L--- 488 (1871)
.++.+++.++...+....+..+.+++..++|.++.+++|++..||..|..+++.+++.+|+ ..+.+|++.+
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999999987766656667788999999999999999999999999999999997 2333333222
Q ss_pred ----------CHHHHHHHHHHH----hcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000200 489 ----------DDVRRNKLSEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1871)
Q Consensus 489 ----------d~~kk~KI~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 554 (1871)
+..-|.....++ ...|.. . .+- -+...+.= .... .....
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~--~~~----------------~~~~l~~L-~~~l--~~e~~----- 624 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICNLGDN-L--GSD----------------LPNTLQIF-LERL--KNEIT----- 624 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-C--CTH----------------HHHHHHHH-HHHT--TSSSH-----
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-h--hhh----------------HHHHHHHH-HHHh--ccchh-----
Confidence 222222222222 111100 0 000 00000000 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc
Q 000200 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 634 (1871)
Q Consensus 555 ~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~ 634 (1871)
..++.. +-+.-..+. . +. +.+.-+..++ +.+.+.+.+.+|..|.++++.+...+.....
T Consensus 625 ------r~~~~~-al~~i~~~~--~------~~-----~~~~~~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 625 ------RLTTVK-ALTLIAGSP--L------KI-----DLRPVLGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp ------HHHHHH-HHHHHTTCS--S------CC-----CCHHHHHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred ------HHHHHH-HHHHHHhCc--c------cc-----chHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 000000 000000000 0 00 1111222222 3567888999999999999999988877432
Q ss_pred cchhHHHHHHHHHhc-CCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHHHHHHhh
Q 000200 635 LDQSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV 713 (1871)
Q Consensus 635 ~~~~~~~lvr~l~~~-PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~~~aE~~ 713 (1871)
.. ..+.+..+|... |.+.++++.+....++++..+....+.........+++.++..+....+...+.+.+..+....
T Consensus 684 ~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l 762 (1230)
T 1u6g_C 684 SL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQAL 762 (1230)
T ss_dssp TC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHH
Confidence 21 234555555433 5678999999999999999988654332222344555666665555443333333333222211
Q ss_pred ----c----hHhHHHHHHH-----------------------h----------------hhhcCChhhHHHHHHHHHHHH
Q 000200 714 ----G----PGFIFERLYK-----------------------I----------------MKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 714 ----~----~~~V~~~l~~-----------------------~----------------~~~~KnPKv~~e~l~wl~~ai 746 (1871)
. ..-++..++. . +...|+|......-.|...++
T Consensus 763 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 842 (1230)
T 1u6g_C 763 VVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSL 842 (1230)
T ss_dssp HTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 0 1111111111 1 111222321111112222445
Q ss_pred HHhccC-ccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCC
Q 000200 747 EDFGVS-HLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 824 (1871)
Q Consensus 747 ~eFG~~-~~~-~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p 824 (1871)
.++|.. .+. ...+++.+.++ |.++|+.||++|...||.+.. | .+..| -|.+++.|+.+ + .
T Consensus 843 ~~~g~~~~~~~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~--~-~~~~~----lp~ll~~l~~~---------~-~ 904 (1230)
T 1u6g_C 843 GEVGHHIDLSGQLELKSVILEA-FSSPSEEVKSAASYALGSISV--G-NLPEY----LPFVLQEITSQ---------P-K 904 (1230)
T ss_dssp HHHHHHSCCCSCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHH--H-THHHH----HHHHHHHHHSC---------G-G
T ss_pred HHhcccCCCcccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhc--c-CHHHH----HHHHHHHHhcc---------c-h
Confidence 555542 111 13577888887 999999999999999999873 1 22223 35666666532 0 0
Q ss_pred cccccccc--c-cCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHh
Q 000200 825 KKTVRASE--S-TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 901 (1871)
Q Consensus 825 ~R~~r~~~--~-~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk 901 (1871)
.|...-.. + ... .++++.-| ...+|.+.|+..+++.+|.+|..+-+-+..++.-. ..++++.|.
T Consensus 905 ~~~~~l~al~e~i~~--~~~~~~~~---~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~ 971 (1230)
T 1u6g_C 905 RQYLLLHSLKEIISS--ASVVGLKP---YVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLK 971 (1230)
T ss_dssp GHHHHHHHHHHHHHS--SCSTTTHH---HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHT
T ss_pred hhHHHHHHHHHHHhc--CChhhHHh---hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHH
Confidence 11100000 0 000 00111112 13457778888899999999999999999888521 267999999
Q ss_pred hhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 902 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 902 ~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
.++.|+|..+-..++.++..+...+|+.+..|.+.++++++..|.|....||.++..+|..++...+
T Consensus 972 ~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~ 1038 (1230)
T 1u6g_C 972 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1038 (1230)
T ss_dssp TTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCh
Confidence 9999999999888988888888888999999999999999999999999999999999999997765
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.93 E-value=1.6e-21 Score=272.02 Aligned_cols=610 Identities=11% Similarity=0.119 Sum_probs=387.6
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCC--CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 366 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~--~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~ 366 (1871)
.+.+++.++..-.|..|++.|...+..+.+. +.....++..|-+.+.|.|..|-..|+.|++.++.+++. +|...
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~ 86 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVET 86 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 5788899999999999999999877655443 223558899999999999999999999999999998876 67888
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----------hhhhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCC
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----------LVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----------l~~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+++.+++.+.|.+..||.++..+|..++...... ..++++.+..+++ +.++.+|..++..|..++...+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999998762111 4567777888888 6899999999999999987654
Q ss_pred hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 000200 436 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSAR 515 (1871)
Q Consensus 436 ~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~ 515 (1871)
.. +.+.+..+++.++.+++|.++.||++|..+|+.+....|+..+..++ ..+.+.+..... + .
T Consensus 167 ~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l--------~~l~~~L~~~~~------~--~ 229 (1230)
T 1u6g_C 167 GL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI--------EHLLSELSKNDS------M--S 229 (1230)
T ss_dssp SS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHH--------HHHHHHHHHTCS------S--C
T ss_pred hH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH--------HHHHHHhccCCc------h--h
Confidence 32 22345778999999999999999999999999999888865322221 122333322100 0 0
Q ss_pred ccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHH
Q 000200 516 VQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIE 595 (1871)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e 595 (1871)
. + .. .=++-
T Consensus 230 ~---r---------------~~-----------------------------------------------------a~~~l 238 (1230)
T 1u6g_C 230 T---T---------------RT-----------------------------------------------------YIQCI 238 (1230)
T ss_dssp S---C---------------TT-----------------------------------------------------HHHHH
T ss_pred H---H---------------HH-----------------------------------------------------HHHHH
Confidence 0 0 00 00000
Q ss_pred HHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-c-chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHh
Q 000200 596 SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-L-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 673 (1871)
Q Consensus 596 ~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~-~-~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~ 673 (1871)
..+...+|..+...+ . .-+.-+.+.+...++ . ....+.+-.+.... .+.--..+...+..+......
T Consensus 239 ~~l~~~~~~~~~~~l-~-------~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYL-E-------KIIPLVVKFCNVDDDELREYCIQAFESFVRRC---PKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp HHHHHHSSGGGTTSC-T-------THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT---TCCCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhHHHHHHHH-H-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC---hHHHHHhHHHHHHHHHHHhCC
Confidence 000001111000000 0 011111111111100 0 00112222222211 111111222222222111000
Q ss_pred cCCCCcc-chhhh--ccc--hh-------hccc---c--chhhhHHHHHHHHHHHhhch--HhHHHHHHHhh---hhcCC
Q 000200 674 ATKFPKK-CVVLC--LLG--IS-------ERVA---D--IKTRAHAMKCLTTFSEAVGP--GFIFERLYKIM---KDHKN 731 (1871)
Q Consensus 674 ~~~fs~~-~~~~~--l~~--lv-------eKlg---D--~K~r~~a~e~L~~~aE~~~~--~~V~~~l~~~~---~~~Kn 731 (1871)
.+.+... ..... +.. .. +... | -++|..|.++|..++...+. ..+++.+++.+ +...+
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~ 387 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE 387 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence 0000000 00000 000 00 0000 1 35789999999999985542 23333333333 35678
Q ss_pred hhhHHHHHHHHHHHHHHhccCc--------------------cchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 732 PKVLSEGILWMVSAVEDFGVSH--------------------LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 732 PKv~~e~l~wl~~ai~eFG~~~--------------------~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+.|+.+++..+..++...|... --+..+++.+... |.+.++.||.+++.+++.+-...+
T Consensus 388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ-MKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHch
Confidence 9999999999999998876410 1235677777776 999999999999999998877655
Q ss_pred chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCCh--HH
Q 000200 792 PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW--KV 869 (1871)
Q Consensus 792 ~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~W--K~ 869 (1871)
..+..+++.+= +.+++.+.|++| .+
T Consensus 467 ~~l~~~l~~ll-----------------------------------------------------~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 467 GALTQHIPVLV-----------------------------------------------------PGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp TTTGGGHHHHH-----------------------------------------------------HHHHHHTTCSSSCHHH
T ss_pred hhhHHHHHHHH-----------------------------------------------------HHHHHHHcCCCCcchH
Confidence 44544443333 334444555555 78
Q ss_pred HHHHHHHHHHHHHHcccC-CCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcCh-------hHHhhhhhhhHHH
Q 000200 870 RLESIEAVNKILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP-------AVEKSSKGVLSDI 941 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankr-I~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~-------~~~k~~k~l~~~i 941 (1871)
|.+++..+..++...++. +.|- +..++..|-..+.|.|..+...|+.+++.++.++|+ .+.+|...++|.+
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~-l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~l 572 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPH-VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 572 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHH-HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhH-HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 999999999988633222 3332 367888888889999999989999999999999998 7889999999999
Q ss_pred HHHh--ccCchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--Ccc-hhhhh
Q 000200 942 LKCL--GDNKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPD-AAHLL 1014 (1871)
Q Consensus 942 l~~l--~D~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--~~~-~~~~~ 1014 (1871)
+..| .|....+|++++.|+...+..+|- ...++.+...|...-.+...|...+.-+..-...... ... ...++
T Consensus 573 l~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~ 652 (1230)
T 1u6g_C 573 IKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGV 652 (1230)
T ss_dssp HHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHH
Confidence 9999 888999999999999999999873 3334444444432111334577766555543322111 112 23444
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHhhcc
Q 000200 1015 KPASIAMTDKSSDVRKAAEACIVEILRAGGQ----ETIEKNLKDI 1055 (1871)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~----~~~~~~~~~L 1055 (1871)
..+...+.|.+..+|.+|..+|..++...|. +.+...+..+
T Consensus 653 ~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~l 697 (1230)
T 1u6g_C 653 PILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDEL 697 (1230)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 5577789999999999999999999999874 5566665544
No 11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.89 E-value=1.3e-20 Score=240.37 Aligned_cols=554 Identities=18% Similarity=0.182 Sum_probs=373.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.+.+.+.+.+|+.|..|...|..+... +.+ ....+|+..|...+ |.+..|...++++++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 688899999999999999999876531 111 22457888888777 777788889999999888776543 477788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh----hHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD----VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 443 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~----~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~ 443 (1871)
++.+..-+.+....||+++.++|..++.. .+-+. +++-+....++.++.+|..++..+.......+... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~----~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH----H
Confidence 88887777899999999999999999875 34332 33444455578889999999998888776655332 3
Q ss_pred hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCC
Q 000200 444 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 523 (1871)
Q Consensus 444 k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1871)
..++|.+..+++|.++.||.+|+++|+.+...+|.+...+ .+=+ .+.+.+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~l~~----~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKS---EIIP----MFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHH---THHH----HHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHH---HHHH----HHHHHhcCC--------------------
Confidence 6788999999999999999999999999999999642211 1000 112222110
Q ss_pred CCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCc
Q 000200 524 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 603 (1871)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~ 603 (1871)
...++..+....+. - . ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~~-----------------------------l---~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACVN-----------------------------I---A--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHHH-----------------------------H---H--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHHH-----------------------------H---H--------HhCCHHHH----HHHHH
Confidence 00011110000000 0 0 00011221 12233
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~ 683 (1871)
+-+...+.+.+|..|..+.+.+.......+.. ...+.++..+.. ..+|.+
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~--~l~d~~--------------------------- 294 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQN--LMKDCE--------------------------- 294 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHH--HHTCSS---------------------------
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHH--HhCCCc---------------------------
Confidence 45567778888888888888776555443210 000111111110 122222
Q ss_pred hhccchhhccccchhhhHHHHHHHHHHHhhchH--------hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc
Q 000200 684 LCLLGISERVADIKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 755 (1871)
Q Consensus 684 ~~l~~lveKlgD~K~r~~a~e~L~~~aE~~~~~--------~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~ 755 (1871)
.-+|..+..+|-.+++..+++ .++..+... .+.++|+|+..++.++..+..-+|-.. -
T Consensus 295 ------------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~-~ 360 (588)
T 1b3u_A 295 ------------AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN-T 360 (588)
T ss_dssp ------------HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH-H
T ss_pred ------------HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH-H
Confidence 234555555555555555433 223333333 467889999999888888887777532 2
Q ss_pred hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccC
Q 000200 756 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 835 (1871)
Q Consensus 756 ~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~ 835 (1871)
...++..+... |.+.++.||.+++..++.+-..+|+.. +.
T Consensus 361 ~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~------------------------------------- 400 (588)
T 1b3u_A 361 IEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--LS------------------------------------- 400 (588)
T ss_dssp HHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--HH-------------------------------------
T ss_pred HHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--HH-------------------------------------
Confidence 34566667776 888999999999998888887766421 00
Q ss_pred CCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHH
Q 000200 836 SVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 915 (1871)
Q Consensus 836 ~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~a 915 (1871)
..+-+.+.+-+.|++|++|..+++.+..+...-.... ....+++.|...|.|.+..|...|
T Consensus 401 ----------------~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 401 ----------------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp ----------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHH
Confidence 0122334455678899999999999999986432221 114688888889999999999999
Q ss_pred HHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHHHHHHHhcccCCcchHH
Q 000200 916 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 916 l~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~i~~~L~~~~~~p~~r~ 991 (1871)
+.+++.++..+|+.+ +...++|.++..+.|....+|.+++.++..+...+|.+. +++.+...|.++ ++++|.
T Consensus 462 ~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~Vr~ 537 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANVRF 537 (588)
T ss_dssp HHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHHHH
T ss_pred HHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchHHH
Confidence 999999999999875 466789999999999999999999999999999988654 455555555554 588999
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhHHh-hhcCCCCHHHHHHHHHHHHHH
Q 000200 992 DLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~-~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.++..|.+....... ......+.|.+ ..++|++.+||.+|..+|..+
T Consensus 538 ~a~~~l~~l~~~~~~-~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 538 NVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhch-hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999888877655432 11224555644 456999999999999998754
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=5.1e-18 Score=228.15 Aligned_cols=566 Identities=15% Similarity=0.181 Sum_probs=390.2
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--hccccccchhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRF 366 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g--Lr~~F~~y~~~ 366 (1871)
+...+.+..+..|+.+++.|..+.. .|+.-.....+++..+-+.+.|.+-.|...|++++..+++. .++.+.+|...
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~ 299 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 299 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4444556778899999999988765 44433334568999999999999999999999999999874 45557889999
Q ss_pred hHHHHHHHh-----------cc-----------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHH
Q 000200 367 LLPVLLEKL-----------KE-----------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 367 ~~~~lLekl-----------KE-----------KK~~V~eAl~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~et 423 (1871)
++|.++..+ .| ..-+||.++..+|+.++.. +..-+..+++-+...+.+.+|.+|..+
T Consensus 300 l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa 379 (852)
T 4fdd_A 300 LIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESG 379 (852)
T ss_dssp HHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999998 45 5668999999999999876 111133455666677889999999999
Q ss_pred HHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcC
Q 000200 424 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
+..|....+..+. .+.+.+..++|.++.+++|.++.||.+|+.++|.+...++......+
T Consensus 380 ~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~------------------- 439 (852)
T 4fdd_A 380 ILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY------------------- 439 (852)
T ss_dssp HHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-------------------
T ss_pred HHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-------------------
Confidence 9999877765543 33456688999999999999999999999999976655432110000
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q 000200 504 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 583 (1871)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~ 583 (1871)
T Consensus 440 -------------------------------------------------------------------------------- 439 (852)
T 4fdd_A 440 -------------------------------------------------------------------------------- 439 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHhc-CCCccchHHHHH
Q 000200 584 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV-QNLDQSVEILVRLVCML-PGWSEKNVQVQQ 661 (1871)
Q Consensus 584 ~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~-~~~~~~~~~lvr~l~~~-PgwkesNfqV~~ 661 (1871)
.+++- +.++..|.+.+|..|-+|...+...++.. .......+-++..|... ..+...|. .
T Consensus 440 -------~~~ll--------~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~---~ 501 (852)
T 4fdd_A 440 -------LKPLM--------TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL---L 501 (852)
T ss_dssp -------HHHHH--------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHH---H
T ss_pred -------HHHHH--------HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHH---H
Confidence 01111 22445556667777777777777666552 22223333333322211 11233333 3
Q ss_pred HHHHHHHHHHHhcC-CCC-ccchhhhccchhhcc---cc--chhhhHHHHHHHHHHHhhchHhH--HHHHHH----hhh-
Q 000200 662 QVIEVINYLAATAT-KFP-KKCVVLCLLGISERV---AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYK----IMK- 727 (1871)
Q Consensus 662 ~~leil~~la~~~~-~fs-~~~~~~~l~~lveKl---gD--~K~r~~a~e~L~~~aE~~~~~~V--~~~l~~----~~~- 727 (1871)
..++.+..++...+ .+. ......+++.++++. .| ...+ .+.+++..++...+..|+ +..+++ .+.
T Consensus 502 ~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~ 580 (852)
T 4fdd_A 502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQK 580 (852)
T ss_dssp HHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 45566666654332 222 234456677776432 22 3343 688999999998887664 333333 221
Q ss_pred ---------------hcCChhhHHHHHHHHHHHHHHhccCccch---HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 728 ---------------DHKNPKVLSEGILWMVSAVEDFGVSHLKL---KDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 728 ---------------~~KnPKv~~e~l~wl~~ai~eFG~~~~~~---K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
......++..++..++.+++.+|-...+. ..++..+..+ +++.++.||.+|..+++.+-++
T Consensus 581 ~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 581 TLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKA 659 (852)
T ss_dssp HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHH-hCCCChhHHHHHHHHHHHHHHH
Confidence 11245678888999999999998543322 3678888886 9999999999999999999999
Q ss_pred hCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHH
Q 000200 790 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 869 (1871)
Q Consensus 790 ~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~ 869 (1871)
+|..+..|+..+-|.+. +.+++.++.+
T Consensus 660 ~~~~~~~~l~~~lp~l~-----------------------------------------------------~~l~~~~~~v 686 (852)
T 4fdd_A 660 CFQHVKPCIADFMPILG-----------------------------------------------------TNLNPEFISV 686 (852)
T ss_dssp CGGGTGGGHHHHHHHHH-----------------------------------------------------HTCCTTSHHH
T ss_pred hhHHHHHHHHHHHHHHH-----------------------------------------------------HHcCccchHH
Confidence 99999988766544443 3334456788
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc
Q 000200 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 947 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D 947 (1871)
|+.|...+..|+......++|-. ..++..|-..|.+. ++.+...|..++|+++...+..+.+|...+++.++..|.+
T Consensus 687 ~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~ 765 (852)
T 4fdd_A 687 CNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN 765 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhcc
Confidence 99999999999876555688875 88888888888644 6789999999999999994334568999999999999976
Q ss_pred Cchh-HHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCH
Q 000200 948 NKKH-MRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSS 1026 (1871)
Q Consensus 948 ~K~~-vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~ 1026 (1871)
.... .|+.+..++..++..-+ ..+++ .+.|+-.. ++.-.+..+
T Consensus 766 ~~d~~e~~~a~~~l~~li~~~p-~~~~~------------------~~~~~~~~-----------------~~~~~~~~~ 809 (852)
T 4fdd_A 766 IRDNEEKDSAFRGICTMISVNP-SGVIQ------------------DFIFFCDA-----------------VASWINPKD 809 (852)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCG-GGTGG------------------GHHHHHHH-----------------HHTCSSCCH
T ss_pred ccccHHHHHHHHHHHHHHHhCh-HhHHH------------------HHHHHHHH-----------------HHhcCCCCH
Confidence 4444 68888888888766632 11111 11111111 122234467
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHH
Q 000200 1027 DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1065 (1871)
Q Consensus 1027 dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~ 1065 (1871)
|.+..=..+|-.+=..+|.+.....+..+.|..+..+.+
T Consensus 810 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 810 DLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHH
Confidence 777777888887778888888888888888877766554
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.87 E-value=6e-18 Score=225.92 Aligned_cols=704 Identities=13% Similarity=0.141 Sum_probs=456.1
Q ss_pred cCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCC-CHHHHHHHHHHHHHHHHHcChh---hhhhhhHHH
Q 000200 20 LLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVC 95 (1871)
Q Consensus 20 l~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~Ds-N~~aqek~leal~~~l~~a~~~---~~~~~~~~~ 95 (1871)
|.+.+=+.|..+.+-+...+...... ..|..+.+.+-..+.+. |..+.+.++.++..+++..+.. .......++
T Consensus 104 l~~~~~~vr~~~~~~l~~i~~~~~p~--~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll 181 (861)
T 2bpt_A 104 LVSIEPRIANAAAQLIAAIADIELPH--GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHGGG--TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HCCCchHHHHHHHHHHHHHHHhhCcc--cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Confidence 44555666666666666555431110 02333333334456777 9999999999998888764432 123444555
Q ss_pred HHHHHhhhc-C--ChhhHHHHHHHHHHHHhhcc--------hhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCcc
Q 000200 96 DAIAAKCLT-G--RPKTVEKAQAVFMLWVELEA--------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII 164 (1871)
Q Consensus 96 ~~lveK~L~-~--r~~tk~~a~e~~l~~vE~e~--------~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv 164 (1871)
+.+ .+++. . .+..+..|.+|+..+++.-. ...+++.+...+.+..+++...++.++..++..++....
T Consensus 182 ~~l-~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 260 (861)
T 2bpt_A 182 IAI-VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260 (861)
T ss_dssp HHH-HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred HHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 34554 3 56788889999887765311 134667777788889999999999999999999986433
Q ss_pred C-hh-HHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc---hhhh
Q 000200 165 P-PK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR---KIRA 239 (1871)
Q Consensus 165 ~-~K-~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R---~~Rs 239 (1871)
+ +. .|+..+-..+.+.|..||..+..++..+...... . . ... . +. + ..|.+ +++.
T Consensus 261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~-~-~~~-----------~--~~--~-~~~~~~~~~~~~ 320 (861)
T 2bpt_A 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID--I-A-YEL-----------A--QF--P-QSPLQSYNFALS 320 (861)
T ss_dssp HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH--H-H-HHH-----------H--HC--T-TCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh--h-h-hhh-----------h--hc--c-CCchhhHHHHHH
Confidence 2 34 6677777778899999999999988777665421 0 0 000 0 00 0 01111 1110
Q ss_pred HHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCC
Q 000200 240 EQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIA 319 (1871)
Q Consensus 240 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~ 319 (1871)
.-. .-....-..-... .+ |. .+..|..|+.+.+.|..+...-.
T Consensus 321 ~~~--~il~~ll~~l~~~---------~~--d~----------------------~d~~~~~r~~a~~~L~~l~~~~~-- 363 (861)
T 2bpt_A 321 SIK--DVVPNLLNLLTRQ---------NE--DP----------------------EDDDWNVSMSAGACLQLFAQNCG-- 363 (861)
T ss_dssp HHH--HHHHHHHHHTTCC---------CC--C-----------------------CCCCCHHHHHHHHHHHHHHHHHG--
T ss_pred HHH--HHHHHHHHHHHhc---------cc--cc----------------------ccccCcHHHHHHHHHHHHHHHcc--
Confidence 000 0000000000000 00 00 01248999999998887764211
Q ss_pred CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc-cccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-
Q 000200 320 PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG- 397 (1871)
Q Consensus 320 ~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr-~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~- 397 (1871)
..-...++..+...+.|.|-.+-..|+.+++.|+.+.+ ..+.+|...++|.++..++|..+.||.++..+|-.++...
T Consensus 364 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 364 NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 22356889999999999999999999999999999987 7788999999999999999999999999998888887651
Q ss_pred -----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC---hhHHHHhhhhhHHHHHhhhC--CCCHHHHHHHHH
Q 000200 398 -----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFS 467 (1871)
Q Consensus 398 -----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~--Ds~~~VR~aA~~ 467 (1871)
...+..+++.+..++++. |.+|..++.-|....+... +..+.+.+..+++.+++.++ |.++.||.++++
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 123677888888889876 9999988887777766543 23444566788999999998 555899999999
Q ss_pred HHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCC
Q 000200 468 VLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 547 (1871)
Q Consensus 468 ~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 547 (1871)
+++.+....|++ +.+++..+-+.-...+...+.-.
T Consensus 523 al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~-------------------------------------------- 557 (861)
T 2bpt_A 523 ALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVD-------------------------------------------- 557 (861)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSC--------------------------------------------
T ss_pred HHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 999999999975 45555543332222222211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHH
Q 000200 548 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 627 (1871)
Q Consensus 548 ~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~ 627 (1871)
..-.+.++-+ .....|..+++
T Consensus 558 --------------------------------------~~i~~~~~~~-----------------~~~~~~~~~~~---- 578 (861)
T 2bpt_A 558 --------------------------------------ENQLTLEDAQ-----------------SLQELQSNILT---- 578 (861)
T ss_dssp --------------------------------------GGGCCHHHHH-----------------HHHHHHHHHHH----
T ss_pred --------------------------------------cccCChhhHH-----------------HHHHHHHHHHH----
Confidence 0000100000 00011111111
Q ss_pred HHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000200 628 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1871)
Q Consensus 628 ~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1871)
. ...+++.+. +.+. ......+..+..+.+.. . .| .+|+.+..++.
T Consensus 579 ~----------l~~l~~~~~--~~~~----~~~~~l~~~l~~~l~~~-~-----------------~~-~v~~~~~~~l~ 623 (861)
T 2bpt_A 579 V----------LAAVIRKSP--SSVE----PVADMLMGLFFRLLEKK-D-----------------SA-FIEDDVFYAIS 623 (861)
T ss_dssp H----------HHHHHHHCG--GGTG----GGHHHHHHHHHHHHHST-T-----------------GG-GTHHHHHHHHH
T ss_pred H----------HHHHHHHhh--hhhH----HHHHHHHHHHHHHHccC-C-----------------CC-cHHHHHHHHHH
Confidence 1 111222221 1111 11222233222222210 0 01 56778888888
Q ss_pred HHHHhhchHhH--HH----HHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCcc--HHHHHH
Q 000200 708 TFSEAVGPGFI--FE----RLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSA--AATRNA 778 (1871)
Q Consensus 708 ~~aE~~~~~~V--~~----~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~sN--~~VR~a 778 (1871)
.+++..+..|. +. .++..+ +++++.++..++..+..+.+.+|-...+ +..++..+-.. |++.| +.||..
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~ 701 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPA 701 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHH
Confidence 88888776543 33 444443 6799999999999999999998853211 24566666665 77766 999999
Q ss_pred HHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHH
Q 000200 779 TIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 858 (1871)
Q Consensus 779 Ai~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l 858 (1871)
++.+++.+-..+|+.+.+|+..+-|.++..++. .+ ++ + .++.
T Consensus 702 ~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~----~~--~~-------------------~-------------d~d~ 743 (861)
T 2bpt_A 702 VLSVFGDIASNIGADFIPYLNDIMALCVAAQNT----KP--EN-------------------G-------------TLEA 743 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC----CC--SS-------------------S-------------SHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc----CC--CC-------------------C-------------ChHH
Confidence 999999999999999999998888877765531 00 00 0 0110
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHcc---cCCCCCCccchHHHHhhhccch----hHhHHHHHHHHHHHHHHhc-ChhH
Q 000200 859 VKSLESPDWKVRLESIEAVNKILEEAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAV 930 (1871)
Q Consensus 859 ~~~l~d~~WK~RkEaLe~v~~il~~an---krI~p~~~geL~~aLk~rl~Ds----Nk~lv~~al~ii~~lA~am-G~~~ 930 (1871)
.+-.+++|..+++.+..|+...+ ..+.|-. .+++..|...+.|. +..+...|+++++.++.++ |+.|
T Consensus 744 ----~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~-~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 744 ----LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV-GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH-HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH-HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 01136899999999999997543 3355543 77888888888885 8899999999999999999 9999
Q ss_pred Hhhhh-hhhHHHHHHhcc---CchhHHHHHHHHHHHHHHhcc
Q 000200 931 EKSSK-GVLSDILKCLGD---NKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 931 ~k~~k-~l~~~il~~l~D---~K~~vR~aa~~alda~~~~~g 968 (1871)
.+|.. .++|.+++.|.. ....+++.|.=|+.....+.+
T Consensus 819 ~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~~ 860 (861)
T 2bpt_A 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999 899999999883 556688888777776655443
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.86 E-value=2.5e-17 Score=219.93 Aligned_cols=726 Identities=11% Similarity=0.098 Sum_probs=463.4
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCC-CCHHHHHHHHHHHHHHHHHcCh----------h--hh
Q 000200 22 HKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVAD-SNAPVQDKALDALIAYLKAADA----------D--AG 88 (1871)
Q Consensus 22 hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~D-sN~~aqek~leal~~~l~~a~~----------~--~~ 88 (1871)
+.+=-.|..|-+.|.+.... +.|.|..+ ++.-+..+ .+..+...|...+..++..... . ..
T Consensus 16 s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~--l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~ 89 (861)
T 2bpt_A 16 SPDQNIRLTSETQLKKLSND----NFLQFAGL--SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVS 89 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH----CHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHHHHhh----CHHHHHHH--HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCC
Confidence 33445788888888764321 12344322 22222222 3566666555555444321100 0 00
Q ss_pred -hhhhHHHHHHHHhhhc-CChhhHHHHHHHHHHHHhhcch----hhHHHHHHHHhhcc-CchhHHHHHHHHHHHHHhhCC
Q 000200 89 -RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGA 161 (1871)
Q Consensus 89 -~~~~~~~~~lveK~L~-~r~~tk~~a~e~~l~~vE~e~~----~~v~e~ll~~~~~K-~PKvvaaai~~l~~~l~~FG~ 161 (1871)
.....+-..+++ +|. .-+..+..+..++-..+..+-+ ..++..|...+.+. +|.+.-.++.++..+.++++.
T Consensus 90 ~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~ 168 (861)
T 2bpt_A 90 PEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADP 168 (861)
T ss_dssp HHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCh
Confidence 011122333444 343 3455666666665555544322 35677777777766 888888888888888888875
Q ss_pred Cc--c--ChhHHHhhchhhhccc--ChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcc
Q 000200 162 KI--I--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTR 235 (1871)
Q Consensus 162 ~v--v--~~K~ilk~l~~lf~~~--dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R 235 (1871)
.. + ....|+..+-..+.+. +..||..+.+.+..+..|++. .+ +. .....
T Consensus 169 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~----------------- 223 (861)
T 2bpt_A 169 QSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERN----------------- 223 (861)
T ss_dssp TSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHH-----------------
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHH-----------------
Confidence 42 1 2455666666677776 788888887776665544431 11 00 00000
Q ss_pred hhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-
Q 000200 236 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS- 314 (1871)
Q Consensus 236 ~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~- 314 (1871)
.++ ..+.+.+.+..|+.|+.+++.|..+..
T Consensus 224 --------------------------------------------~ll-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 224 --------------------------------------------YLM-----QVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp --------------------------------------------HHH-----HHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 000 012233456679999999999988764
Q ss_pred cCCCCCCChH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----------------cc-cccchhhhHHHHHHHhc
Q 000200 315 TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLK 376 (1871)
Q Consensus 315 ~pKi~~~dy~-eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr----------------~~-F~~y~~~~~~~lLeklK 376 (1871)
.+..-...+. +++..+-..+.|.+-.|...|++++..+++... ++ +.+|...++|.+++.++
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~ 334 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLT 334 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332222234 678888888889999999999999999998752 11 34567889999999998
Q ss_pred c-------CCHHHHHHHHHHHHHHHHh-cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHH
Q 000200 377 E-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 448 (1871)
Q Consensus 377 E-------KK~~V~eAl~~aLda~~~~-~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~ 448 (1871)
+ -..++|.++..+|+.++.. +...+..+++.+...+.+.++.+|..++..|....+...+..+.+.+..++|
T Consensus 335 ~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~ 414 (861)
T 2bpt_A 335 RQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALP 414 (861)
T ss_dssp CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred hcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 3468999999999999875 1112455666777778899999999998888877655543445566788999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH-HHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCC
Q 000200 449 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 527 (1871)
Q Consensus 449 ~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l-~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1871)
.++..+.|.++.||.+++.++|.+...+|.... .++
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------- 451 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------- 451 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-------------------------------------------
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-------------------------------------------
Confidence 999999999999999999999998887764210 000
Q ss_pred CcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHH
Q 000200 528 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 607 (1871)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~ 607 (1871)
.+++- +.++
T Consensus 452 ---------------------------------------------------------------~~~~l--------~~l~ 460 (861)
T 2bpt_A 452 ---------------------------------------------------------------LPGVV--------QACL 460 (861)
T ss_dssp ---------------------------------------------------------------HHHHH--------HHHH
T ss_pred ---------------------------------------------------------------HHHHH--------HHHH
Confidence 00110 1122
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh-----ccchhHH----HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCC
Q 000200 608 GQLKSAVWKERLEAISSLRQQVEAVQ-----NLDQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFP 678 (1871)
Q Consensus 608 ~~L~s~~WK~RL~a~e~l~~~v~~~~-----~~~~~~~----~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs 678 (1871)
..|.+. +..|..+...+...++... ......+ .|++.+.. .|.+..|....++.+..++...+.-.
T Consensus 461 ~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~----~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 461 IGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR----IDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC----SCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC----cCcchHHHHHHHHHHHHHHHHcchhh
Confidence 233332 4555555555554444422 1112222 33333321 24556788888999998888655433
Q ss_pred ccchhhhccchhhcccc-----------------chhhhHHHHHHHHHHHhhchHh------HHHHHHHhhhhcCCh-hh
Q 000200 679 KKCVVLCLLGISERVAD-----------------IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDHKNP-KV 734 (1871)
Q Consensus 679 ~~~~~~~l~~lveKlgD-----------------~K~r~~a~e~L~~~aE~~~~~~------V~~~l~~~~~~~KnP-Kv 734 (1871)
...+..+++.+++.+.+ ..++..+.++|..+++..+..+ ++..++.. .+..++ .+
T Consensus 536 ~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~v 614 (861)
T 2bpt_A 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEKKDSAFI 614 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HccCCCCcH
Confidence 33444566666666653 2357788899999999887643 33344444 356667 89
Q ss_pred HHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHH
Q 000200 735 LSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY 813 (1871)
Q Consensus 735 ~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF 813 (1871)
+.+++.+++.+...+|....+ +..+++.+... |.+.++.||..|+.+++.+-+.+|+.+.+|+.++=|.++..++.+
T Consensus 615 ~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~- 692 (861)
T 2bpt_A 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKA-LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP- 692 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-
Confidence 999999999999988865332 46788888886 888999999999999999999999988888866666555444310
Q ss_pred hcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCc
Q 000200 814 EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT 893 (1871)
Q Consensus 814 ~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~ 893 (1871)
+.++.+|..++..+..|+...+..+.|-.
T Consensus 693 --------------------------------------------------~~~~~vr~~~~~~l~~l~~~~~~~~~~~l- 721 (861)
T 2bpt_A 693 --------------------------------------------------NARRELKPAVLSVFGDIASNIGADFIPYL- 721 (861)
T ss_dssp --------------------------------------------------TCCTTHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred --------------------------------------------------cccHhhhHHHHHHHHHHHHHhhhhHHHHH-
Confidence 01245677888888888865444444432
Q ss_pred cchHHHHhhhcc-----------chhHhHHHHHHHHHHHHHHhcC---hhHHhhhhhhhHHHHHHhccC----chhHHHH
Q 000200 894 GELFGGLRGRLY-----------DSNKNLVMATLITLGAVASAMG---PAVEKSSKGVLSDILKCLGDN----KKHMREC 955 (1871)
Q Consensus 894 geL~~aLk~rl~-----------DsNk~lv~~al~ii~~lA~amG---~~~~k~~k~l~~~il~~l~D~----K~~vR~a 955 (1871)
..+++.|...+. |...++...++++++.++.++| ..|..|...+++.+...+.|. ...||.+
T Consensus 722 ~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~ 801 (861)
T 2bpt_A 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRA 801 (861)
T ss_dssp HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 456666655554 2335677899999999999999 568899999999888888874 7899999
Q ss_pred HHHHHHHHHHhc-cch-------hhhHHHHHHHhcccCCcchHHHHHHHHHHHh
Q 000200 956 TLTVLDAWLAAV-HLD-------KMVPYVTTALTDAKLGAEGRKDLFDWLSKQL 1001 (1871)
Q Consensus 956 a~~alda~~~~~-gl~-------~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l 1001 (1871)
|..++..++... |-+ .+++.+...|........--.+...|..+.+
T Consensus 802 a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 802 AVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 999999999988 522 3344444444421111112345666655544
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.84 E-value=1.3e-16 Score=213.46 Aligned_cols=619 Identities=14% Similarity=0.112 Sum_probs=413.9
Q ss_pred hhhhhhhcc--ChHHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhcccccc
Q 000200 289 GFWEGVKAT--KWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s~--KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~lA~gLr~~F~~ 362 (1871)
.+...+.+. .+..|..+|+.|..+... +.........++..|...+.|. |..+-..|++|++.++..++.++..
T Consensus 132 ~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (876)
T 1qgr_A 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (876)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777 888999999998887653 1111233567888899999865 7889999999999999888776654
Q ss_pred ch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC----hh-hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC
Q 000200 363 SS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 435 (1871)
Q Consensus 363 y~--~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~----l~-~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~ 435 (1871)
+. ..+++.+.+.+.+....||.++.++|..++....-. +. .+++-+...+++..+.+|..++.|+..+.+...
T Consensus 212 ~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~ 291 (876)
T 1qgr_A 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 291 (876)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 32 247888888888889999999999999998752111 33 667777777889999999999999887765310
Q ss_pred --------------------hhHHHHhhhhhHHHHHhhhC-------CCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcC
Q 000200 436 --------------------KAAVLKVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 488 (1871)
Q Consensus 436 --------------------~~~~~~~~k~~~~~l~k~l~-------Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~L 488 (1871)
.......++.++|.++..+. |.+..+|.+|..+|+.+...+|+..+..++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~-- 369 (876)
T 1qgr_A 292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP-- 369 (876)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHH--
T ss_pred hHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHH--
Confidence 01111234677888888873 4567899999999999999999644332222
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000200 489 DDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDG 568 (1871)
Q Consensus 489 d~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~ 568 (1871)
.+.+.+... . ..++..+....+.-
T Consensus 370 ------~l~~~l~~~---------~------------------~~~r~~a~~~l~~i----------------------- 393 (876)
T 1qgr_A 370 ------FIKEHIKNP---------D------------------WRYRDAAVMAFGCI----------------------- 393 (876)
T ss_dssp ------HHHHHTTCS---------S------------------HHHHHHHHHHHHHT-----------------------
T ss_pred ------HHHHHccCC---------C------------------hHHHHHHHHHHHHH-----------------------
Confidence 222222110 0 00111110000000
Q ss_pred CCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHH
Q 000200 569 SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQSVEILVRL 645 (1871)
Q Consensus 569 ~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~---~~~~~~~lvr~ 645 (1871)
. ....++.+...+..++ +.++..|.+.+|..|..|...+....+.... .....+-++..
T Consensus 394 ---------~--------~~~~~~~~~~~~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~ 455 (876)
T 1qgr_A 394 ---------L--------EGPEPSQLKPLVIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp ---------S--------SSSCHHHHHHHHHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred ---------H--------cCCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHH
Confidence 0 0012233333333333 3567888999999999999988877766332 12233334443
Q ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHhcC--------------CCCccchhhhccchhhccccc-----hhhhHHHHHH
Q 000200 646 VCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KTRAHAMKCL 706 (1871)
Q Consensus 646 l~~~PgwkesNfqV~~~~leil~~la~~~~--------------~fs~~~~~~~l~~lveKlgD~-----K~r~~a~e~L 706 (1871)
+.. +..| +..|.......+..++..+. ..-...+..+++.++..+.+. .+|..+.++|
T Consensus 456 l~~--~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 456 LIE--GLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHH--HTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHH--HHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHH
Confidence 332 2344 36677788888888776542 112234556677766666543 5778899999
Q ss_pred HHHHHhhchHh------HHHHHHHhhhh----------cCC----hhhHHHHHHHHHHHHHHhc-cCcc-chHhHHHHHh
Q 000200 707 TTFSEAVGPGF------IFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KLKDLIDFCK 764 (1871)
Q Consensus 707 ~~~aE~~~~~~------V~~~l~~~~~~----------~Kn----PKv~~e~l~wl~~ai~eFG-~~~~-~~K~li~~~k 764 (1871)
..++...+.++ ++..++..+.. ... |.++.-++.++..++..+| -... -+..+++.+-
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 99998776432 22222222211 111 6677788888888888777 2211 1345666666
Q ss_pred hhcCCCcc--HHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCC
Q 000200 765 DTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 842 (1871)
Q Consensus 765 ~~~l~~sN--~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~ 842 (1871)
.. |.+.+ +.||..++.+++.+-..+|..+.+|++.+-|.+...
T Consensus 613 ~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~---------------------------------- 657 (876)
T 1qgr_A 613 RM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG---------------------------------- 657 (876)
T ss_dssp HH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----------------------------------
T ss_pred HH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------------------------------
Confidence 66 77765 589999999999999989888777765544433333
Q ss_pred CCCCccccccCCcHHHHhhcCCC-ChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHH
Q 000200 843 DGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITL 919 (1871)
Q Consensus 843 d~lprvDIs~kit~~l~~~l~d~-~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D--sNk~lv~~al~ii 919 (1871)
+.+. +|.+|..|++.+..|+......+.|.. .+++..|...|.+ .+..+...++.++
T Consensus 658 -------------------l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 658 -------------------LKNYAEYQVCLAAVGLVGDLCRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp -------------------HHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred -------------------HcCcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 3333 688999999999999976555666654 7888889888865 5678999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCc-----------hhHHHHHHHHHHHHHHhcc------------chhhhHHH
Q 000200 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------LDKMVPYV 976 (1871)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K-----------~~vR~aa~~alda~~~~~g------------l~~~~~~i 976 (1871)
+.|+..+|+.|.+|...++|.++..+.++. ..+|.++..++..++...| +..+++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999998763 4899999999999888764 23445555
Q ss_pred HHHHh----cccCCcchHHHHHHHHHHHhccCCC---Ccc-hhhhhhHHhh-hcCCCCHHHHHHHHHHHHHHHH
Q 000200 977 TTALT----DAKLGAEGRKDLFDWLSKQLTGLSG---FPD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 977 ~~~L~----~~~~~p~~r~e~l~wL~~~l~~~~~---~~~-~~~~~~p~~~-~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
...+. ++..+...|...+.-|.+-...... .+- ...++.|++. ++.|.+++||.+|.-+++.+.+
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 55553 2211456777665555443333322 111 2356778888 9999999999999999998765
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=4.3e-18 Score=217.00 Aligned_cols=552 Identities=13% Similarity=0.130 Sum_probs=363.8
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
.++..|.|.+|..|..|+..+.......++. ...+.++.+|.. ..|.+-.|.....+.+..+....+. ......
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~---~~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTD---TIYDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHH---TCCCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 5678999999999999999998765543221 122334555542 1266778888877777654432211 122334
Q ss_pred hccchhhccc--cchhhhHHHHHHHHHHHhhchHhHHHHHHHh---hhhcCChhhHHHHHHHHHHHHHHhccCccchHhH
Q 000200 685 CLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 759 (1871)
Q Consensus 685 ~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~---~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~l 759 (1871)
+++.+..-+. +.-+|..+.++|..+++..++..+...+++. +..+.++.++..++..+..+...+|-. ..+.+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~l 165 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHHH
Confidence 4444433223 3568999999999999998887665544443 346778999999999888887766632 35678
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000200 760 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1871)
Q Consensus 760 i~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1871)
+.++... +.+.|+.||.+|...++.+..++|+.. +..+
T Consensus 166 ~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~--------------------------------------- 203 (588)
T 1b3u_A 166 RQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HHHT---------------------------------------
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HHHH---------------------------------------
Confidence 8888887 899999999999999999988877521 0111
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHH
Q 000200 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 919 (1871)
Q Consensus 840 ~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii 919 (1871)
+-+.+..-+.|.+|.+|..|++.+..+.....+. .....++..|...+.|.+-.+-..|+.++
T Consensus 204 --------------l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l 266 (588)
T 1b3u_A 204 --------------IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKF 266 (588)
T ss_dssp --------------HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred --------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 2234555667889999999999999988642110 01234777788888999999999999999
Q ss_pred HHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHHHHHHHhcccCCcchHH
Q 000200 920 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 920 ~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~i~~~L~~~~~~p~~r~ 991 (1871)
+.++..+|+.. +...++|.++..+.|..+.||.++..+|..+...+|- ..++|.+...+.++ ++..|.
T Consensus 267 ~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~ 342 (588)
T 1b3u_A 267 TELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVKS 342 (588)
T ss_dssp HHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHH
T ss_pred HHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHH
Confidence 99999998753 5567899999999999999999999999999988763 33445555555543 466666
Q ss_pred HHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHhcc
Q 000200 992 DLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1071 (1871)
Q Consensus 992 e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~ka~ 1071 (1871)
.+..+|.+-............++..+..+|.|.+.+||.+|...|+.++..+|.+.+.+ .+.+
T Consensus 343 ~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-----------~~lp------ 405 (588)
T 1b3u_A 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ-----------SLLP------ 405 (588)
T ss_dssp HHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH-----------HHHH------
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHH------
Confidence 66555432221111100012223335556677777777777777777766665432111 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccccchhhhhhhhhhcccCCCChHHHHhhhhcccc
Q 000200 1072 ASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1151 (1871)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~R~~~~~~kw~ 1151 (1871)
T Consensus 406 -------------------------------------------------------------------------------- 405 (588)
T 1b3u_A 406 -------------------------------------------------------------------------------- 405 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCChhHHHHHHHHHHHhhhHHHHHhhcccCHHHHHHHHHHHHHhcCCChhhhh--HhHHHHHHHHHHhccccchHHHH
Q 000200 1152 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII--EVLDILLRWFVLQFCKSNTTCLL 1229 (1871)
Q Consensus 1152 f~~pr~e~ve~L~~q~~~~~~~~l~~~lf~~d~k~~l~al~~l~~~l~~~~~~~i--~~lDlllkw~tlr~~dtN~~vl~ 1229 (1871)
.+...+-+.+|+-+..+++.|.......+.+.. ..+.++++| +.|++..|-.
T Consensus 406 ----------------------~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~~Vr~ 459 (588)
T 1b3u_A 406 ----------------------AIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW----LVDHVYAIRE 459 (588)
T ss_dssp ----------------------HHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG----GGCSSHHHHH
T ss_pred ----------------------HHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----hcCCcHHHHH
Confidence 111122233444444333333322211111110 113344444 4788888877
Q ss_pred HHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCc----cchHHHHHhhhccCCh
Q 000200 1230 KVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNN 1305 (1871)
Q Consensus 1230 k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~----skvf~~l~~glksKN~ 1305 (1871)
..+..+..+...+.... -...++|.|+.-..|+...+|...=..+..++..++. ..++|.|+..++..++
T Consensus 460 ~a~~~l~~l~~~~~~~~------~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~ 533 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW------AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533 (588)
T ss_dssp HHHHHHHHHHHHHCHHH------HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHHHhCchh------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCc
Confidence 78888877777654431 1356888888766777778888766666666554443 4688888888888899
Q ss_pred hhHhHHHHHHHHHHHhhcCcccCccchHHHHHHHhccCChhHHHHHHHHHHH
Q 000200 1306 RTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1357 (1871)
Q Consensus 1306 r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia~~i~drD~~VR~AALn~l~~ 1357 (1871)
..|..++..++.+...+|-.. .....++.+.++..|+|..||.+|..++.+
T Consensus 534 ~Vr~~a~~~l~~l~~~~~~~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 534 NVRFNVAKSLQKIGPILDNST-LQSEVKPILEKLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HHHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 999999999999888777542 112345778788899999999999988874
No 17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=4.4e-16 Score=209.37 Aligned_cols=595 Identities=11% Similarity=0.114 Sum_probs=398.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhh-cCCCC-----CCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-----PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~-----~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~ 362 (1871)
.+.+.+.+.+|..|..++..|..++. .+... ......++..|.+.+.|.+..|-..|++|+..+.......+..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~ 211 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45556666777888888888877664 23221 1236778888888889999999999999999998887777888
Q ss_pred chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCC-hh
Q 000200 363 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KA 437 (1871)
Q Consensus 363 y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~-~~ 437 (1871)
+...+++.++..+.|....||.++..||..++.... ..+..+++.+...++++.+.||.+++.|+..+.+... +.
T Consensus 212 ~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~ 291 (852)
T 4fdd_A 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291 (852)
T ss_dssp SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence 888999999999999999999999999999987511 1255677777888899999999999999987654321 12
Q ss_pred HHHHhhhhhHHHHHhhh-----------CC-----------CCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHH
Q 000200 438 AVLKVHKDYVPICMECL-----------ND-----------GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 495 (1871)
Q Consensus 438 ~~~~~~k~~~~~l~k~l-----------~D-----------s~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~K 495 (1871)
.+.+.+..++|.++..+ +| .+-.||.+|..+|+.+...+|+..+..++
T Consensus 292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~---------- 361 (852)
T 4fdd_A 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL---------- 361 (852)
T ss_dssp HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH----------
Confidence 22344567888898888 33 33446777777777776666643221110
Q ss_pred HHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000200 496 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETS 575 (1871)
Q Consensus 496 I~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s 575 (1871)
T Consensus 362 -------------------------------------------------------------------------------- 361 (852)
T 4fdd_A 362 -------------------------------------------------------------------------------- 361 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHhcCCCcc
Q 000200 576 KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSE 654 (1871)
Q Consensus 576 ~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~~~~~~~~lvr~l~~~Pgwke 654 (1871)
+-+...+.+.+|+.|.+|+..+....+... ......+-++..+. +..+|
T Consensus 362 ----------------------------~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~--~~l~d 411 (852)
T 4fdd_A 362 ----------------------------PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI--QCLSD 411 (852)
T ss_dssp ----------------------------HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH--HHTTC
T ss_pred ----------------------------HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--HHcCC
Confidence 112234456689999998888876665422 22223344555554 34689
Q ss_pred chHHHHHHHHHHHHHHHHhcC-CCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH------hHHHHHHHh
Q 000200 655 KNVQVQQQVIEVINYLAATAT-KFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG------FIFERLYKI 725 (1871)
Q Consensus 655 sNfqV~~~~leil~~la~~~~-~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~------~V~~~l~~~ 725 (1871)
.|..|.......+..+++..+ .........+++.++..+.| .++|..+..+|..+++..+.. -++..++..
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999999999988876432 23344556677888877765 578999999999999977653 234444444
Q ss_pred hhhcCChhhHHHHHHHHHHHHHHhccCccc---hHhHHHHHh---hhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhh
Q 000200 726 MKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK---DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 799 (1871)
Q Consensus 726 ~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~---~K~li~~~k---~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~ 799 (1871)
+ +.-+.+...-++..+..+.+..|-.... +..++..+. .. +.+..+.+| .++..++.+...+|..+.+|+.
T Consensus 492 l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 492 F-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp H-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHH
T ss_pred H-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHH
Confidence 3 3233344333333344444433432211 123333332 23 567778887 7899999999999999999998
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHH
Q 000200 800 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 879 (1871)
Q Consensus 800 dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~ 879 (1871)
.+=+.++..|..-+.+.... ... .+ ..+..+-..|.-+++.+..
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~-----------~~~--------~~-----------------~~~~~d~~~~~~~l~~l~~ 612 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLN-----------NAQ--------PD-----------------QYEAPDKDFMIVALDLLSG 612 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHC--------TT-----------------TSCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------hcC--------Cc-----------------ccCCCcchHHHHHHHHHHH
Confidence 88887777777665431000 000 00 0001122358888999999
Q ss_pred HHHHcccCCCCCC-ccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHH
Q 000200 880 ILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 958 (1871)
Q Consensus 880 il~~ankrI~p~~-~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ 958 (1871)
|+..-...+.|-. -..++..|-..+.|.+..+...|..+++.++.++|..|.+|...++|.++..|.+....+|..|..
T Consensus 613 l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 613 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp HHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 8876544554421 046888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc--chhhhHHHHHH----HhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhHHhhhcCC-CCHHHH
Q 000200 959 VLDAWLAAVH--LDKMVPYVTTA----LTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVR 1029 (1871)
Q Consensus 959 alda~~~~~g--l~~~~~~i~~~----L~~~~~~p~~r~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~D-r~~dVR 1029 (1871)
++..++..+| +.++++.+... |.++..+..++..+..=|.+-....+. .+.+..++.+.+..|.+ ++.+.|
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHH
Confidence 9999998886 34444444333 334332223444333333322222211 23355566666666643 455567
Q ss_pred HHHHHHHHHHHHh
Q 000200 1030 KAAEACIVEILRA 1042 (1871)
Q Consensus 1030 kaA~~~L~~~m~~ 1042 (1871)
..|...|..++..
T Consensus 773 ~~a~~~l~~li~~ 785 (852)
T 4fdd_A 773 DSAFRGICTMISV 785 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666654
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.80 E-value=2.9e-16 Score=210.14 Aligned_cols=651 Identities=14% Similarity=0.121 Sum_probs=429.8
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHhc-cccccchhh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLR-THFSGSSRF 366 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~Ds--Nv~vv~~A~~~i~~lA~gLr-~~F~~y~~~ 366 (1871)
+.+.+.+...+. ..+.+.+..+...- ...+.+.+++..|...+.|. +..+...|+++++.|++.++ ..|.+|...
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~-~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAE-IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHH-GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhh-CcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 444454444444 44555555544320 01245778999999999877 89999999999999999874 458899999
Q ss_pred hHHHHHHHhccC--CHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH
Q 000200 367 LLPVLLEKLKEK--KPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 438 (1871)
Q Consensus 367 ~~~~lLeklKEK--K~~V~eAl~~aLda~~~~~~~~l~------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~ 438 (1871)
+++.++..+++. ...||.++.+|+..++.+....+. .+++.+...+.+..+.+|..++.+|.+.+...++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~- 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY- 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 999999999987 588999999999988754111111 35666777778888999999999999999876543
Q ss_pred HHHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH-hcCCCCCCCCCCCccc
Q 000200 439 VLKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI-AGSGGDVATGTSSARV 516 (1871)
Q Consensus 439 ~~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~-~~~~~~~~~~~~~~~~ 516 (1871)
+.+.+. .+++.+..++.|.+++||..|.+++..+.....+ +. ++. .+.. ++. .| .
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~--~~-----~~~------~~~~~~~~-------~~---~ 308 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--LA-----IEA------SEAAEQGR-------PP---E 308 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HH-----HHH------HHHHHHSS-------CC---S
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh--Hh-----hhh------ccccccCC-------Cc---c
Confidence 233445 8899999999999999999999999888765321 00 000 0001 110 00 0
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
. . ... +....++.
T Consensus 309 ~---~---~~~-------------------------------------------------------------~~~~~~~~ 321 (876)
T 1qgr_A 309 H---T---SKF-------------------------------------------------------------YAKGALQY 321 (876)
T ss_dssp S---C---CCC-------------------------------------------------------------HHHHHHHH
T ss_pred c---h---hHH-------------------------------------------------------------HHHHHHHH
Confidence 0 0 000 00000000
Q ss_pred HHhccCcHhHHHhh-------hhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQL-------KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 669 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L-------~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~ 669 (1871)
++ +.++..| .+.+|..|.+|.+-+......... ...+.++.++.. .+.+.|.++...++..+..
T Consensus 322 ----ll-~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~l~~l~~--~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 322 ----LV-PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKE--HIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp ----HH-HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHH
T ss_pred ----Hh-HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHHHHHHHHHH--HccCCChHHHHHHHHHHHH
Confidence 00 0011111 246899999998888766655432 224455555542 4678899999999999988
Q ss_pred HHHhcC-CCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhch--------HhHHHHHHHhhhhcCChhhHHHH
Q 000200 670 LAATAT-KFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGP--------GFIFERLYKIMKDHKNPKVLSEG 738 (1871)
Q Consensus 670 la~~~~-~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~--------~~V~~~l~~~~~~~KnPKv~~e~ 738 (1871)
+++... ..-......+++.++.-+.|. .+|..+..+|..+++..++ .-++..++..+. + +|+|+..+
T Consensus 393 i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a 470 (876)
T 1qgr_A 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNV 470 (876)
T ss_dssp TSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHH
Confidence 775432 111123455777777777775 5899999999999998654 345666666653 3 49999999
Q ss_pred HHHHHHHHHHhcc-------------Ccc--chHhHHHHHhhhcCCCc---cHHHHHHHHHHHHHHHhhhCchhHhhhhc
Q 000200 739 ILWMVSAVEDFGV-------------SHL--KLKDLIDFCKDTGLQSS---AAATRNATIKLLGALHKFVGPDIKGFLAD 800 (1871)
Q Consensus 739 l~wl~~ai~eFG~-------------~~~--~~K~li~~~k~~~l~~s---N~~VR~aAi~Ll~~ly~~~G~~l~~~l~d 800 (1871)
+..+..++..+|- ..+ -+..++..+... +... +..+|..++..++.+-..+|.....++..
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET-TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH-TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH-HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999998870 112 236777777776 7654 57899999999999999999999999988
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCcc----cccccc--ccCCCCCCCCCCCCcccc---ccCCcHHHHhhcCCCC--hHH
Q 000200 801 VKPALLSALDAEYEKNPFEGTVVPKK----TVRASE--STSSVSSGGSDGLPREDI---SGKFTPTLVKSLESPD--WKV 869 (1871)
Q Consensus 801 lkpall~~ie~EF~K~~~~~~p~p~R----~~r~~~--~~~~~~~~~~d~lprvDI---s~kit~~l~~~l~d~~--WK~ 869 (1871)
+=|.++..+...+..-.. ......+ .+|... .-+.-. ..+++.++ .+.|-+.++.-+.+.. |.+
T Consensus 550 l~~~l~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v 624 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESH-IQSTSDRIQFNDLQSLLCATLQNVL----RKVQHQDALQISDVVMASLLRMFQSTAGSGGV 624 (876)
T ss_dssp HHHHHHHHHHHHHTTTTS-CCSTTHHHHHHHHHHHHHHHHHHHH----TTSCHHHHHTTHHHHHHHHHHHC-----CCHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHHHHHHH----HHhChhhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 888888888876532110 0000000 000000 000000 00110111 2334445566666664 899
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhcc-
Q 000200 870 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD- 947 (1871)
Q Consensus 870 RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D- 947 (1871)
|.+++..+..|+......+.|-. .+++..|...|.|. +..+...|+.+++.|+.++|..+.+|...+++.++..|.+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~ 703 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCc
Confidence 99999999999986555566653 78899999999887 8999999999999999999999999999999999999987
Q ss_pred -CchhHHHHHHHHHHHHHHhccc--hhhhHHHHHHHh----cccC--C-------cchHHHHHHHHHHHhccCCCC----
Q 000200 948 -NKKHMRECTLTVLDAWLAAVHL--DKMVPYVTTALT----DAKL--G-------AEGRKDLFDWLSKQLTGLSGF---- 1007 (1871)
Q Consensus 948 -~K~~vR~aa~~alda~~~~~gl--~~~~~~i~~~L~----~~~~--~-------p~~r~e~l~wL~~~l~~~~~~---- 1007 (1871)
....+|.+++.++..++..+|- ..+++.+...|. .... + ..+|..++.++...+......
T Consensus 704 ~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~ 783 (876)
T 1qgr_A 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENV 783 (876)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSC
T ss_pred cccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 4567999999999999988773 344554444443 2110 1 157877777776544432211
Q ss_pred ----cchhhhhhHHh----hhcCCC--CHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 000200 1008 ----PDAAHLLKPAS----IAMTDK--SSDVRKAAEACIVEILRAGGQETIEKN 1051 (1871)
Q Consensus 1008 ----~~~~~~~~p~~----~~L~Dr--~~dVRkaA~~~L~~~m~~~G~~~~~~~ 1051 (1871)
....+++..++ ..++|+ +.+||++|-.+|+.+..++|.+.+..+
T Consensus 784 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 784 HPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp CGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 12233333222 233677 899999999999999999998444333
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.22 E-value=1.5e-08 Score=124.99 Aligned_cols=377 Identities=12% Similarity=0.064 Sum_probs=258.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhc----------
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 674 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~---------- 674 (1871)
.++.++.+.+-..|.+|-+.|.+.-... .......|+..+.. .+.+.+|.+...-++..+..+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--~~~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--LPTFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3556677777788888888887643320 01123344555542 2345677777666666655321
Q ss_pred --CCCCccchhhhccchhhcccc--chhhhHHHHHHHHHHHhhchH----hHHHHHHHhhhhcC--ChhhHHHHHHHHHH
Q 000200 675 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 744 (1871)
Q Consensus 675 --~~fs~~~~~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~----~V~~~l~~~~~~~K--nPKv~~e~l~wl~~ 744 (1871)
..++...-..+-..+++.+++ .++ ..+..++..++....|. -++..++..+ ... +|.++..++.++..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 123333333344445555554 467 77888888888877663 3556666665 445 89999999999999
Q ss_pred HHHHhccCcc--chHhHHHHHhhhcCCCc--cHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000200 745 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1871)
Q Consensus 745 ai~eFG~~~~--~~K~li~~~k~~~l~~s--N~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~ 820 (1871)
+.+++....+ ....++..+..+ |++. |+.||.+|++.++.+-.++++.+... .|.
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--------------~~~------ 215 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE--------------SER------ 215 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--------------HHH------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--------------HHH------
Confidence 9998742222 235677777776 8888 89999999998877643322111000 000
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-chHHH
Q 000200 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 899 (1871)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-eL~~a 899 (1871)
..+-+.+...+.+.++.+|..+++.+..++....+++.+.. . +++..
T Consensus 216 -------------------------------~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~ 263 (462)
T 1ibr_B 216 -------------------------------HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAI 263 (462)
T ss_dssp -------------------------------HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHH
T ss_pred -------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 00112233345678899999999999999987667777775 7 89998
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhc---------------------ChhHHhhhhhhhHHHHHHhcc-------Cchh
Q 000200 900 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGD-------NKKH 951 (1871)
Q Consensus 900 Lk~rl~DsNk~lv~~al~ii~~lA~am---------------------G~~~~k~~k~l~~~il~~l~D-------~K~~ 951 (1871)
+-..+.|.+..+...|+.++..++... ..-+++|...++|.++..|.+ ....
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999988753 223456778899999988864 3458
Q ss_pred HHHHHHHHHHHHHHhccchhhhHH----HHHHHhcccCCcchHHHHHHHHHHHhccCCC---CcchhhhhhHHhhhcCCC
Q 000200 952 MRECTLTVLDAWLAAVHLDKMVPY----VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1024 (1871)
Q Consensus 952 vR~aa~~alda~~~~~gl~~~~~~----i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~---~~~~~~~~~p~~~~L~Dr 1024 (1871)
+|.++..+|+..+..+| +.+++. +...|.++ ++..|...+.-|..-...... .+....++.+++.+|.|.
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 565554 44455543 678888888777754443331 123455666688899999
Q ss_pred CHHHHHHHHHHHHHHHHhcCH
Q 000200 1025 SSDVRKAAEACIVEILRAGGQ 1045 (1871)
Q Consensus 1025 ~~dVRkaA~~~L~~~m~~~G~ 1045 (1871)
++.||.+|..+|+.+...+|.
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998876
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.04 E-value=5.1e-07 Score=116.84 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=128.7
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.++.+.+.+.+=.+|++++..+.-+...-. |...+.-.+-+.+.+.|..+-.++.-.+..+++.- ...+..+
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~ 87 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMA 87 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHH
Confidence 356777888888899999999875432111 33444444555788999988888888888887751 2235677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+..-+.+..+.||..+..+|-.+... --...+++++...+.+.+|.||..+..-+.+.....+.... . ..++
T Consensus 88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~-~--~~~~ 162 (591)
T 2vgl_B 88 VNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE-D--QGFL 162 (591)
T ss_dssp HHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH-H--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc-c--ccHH
Confidence 88999999999999997665444332110 11234556688899999999999999999999885543221 0 3578
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+.+..+|+|+++.||.+|..+|+.+...-+
T Consensus 163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 163 DSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999876543
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.02 E-value=3.1e-08 Score=122.11 Aligned_cols=396 Identities=12% Similarity=0.124 Sum_probs=263.2
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHh--------c--
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGL--------R-- 357 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~D--sNv~vv~~A~~~i~~lA~gL--------r-- 357 (1871)
....+-++.=..|++|-+.|..+... +..+.+..|-.++.+ .+..+-..|+.++..+.+.- .
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVE------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 44556677778999999999886542 234566677777764 47888899998888876331 0
Q ss_pred -cccccc-hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc-C-CChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHH
Q 000200 358 -THFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-C-LNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCI 431 (1871)
Q Consensus 358 -~~F~~y-~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~-~-~~l~~~~e~i~~al~~K--nP~vk~etl~~L~r~l 431 (1871)
..+... ...+-..+++.+++....| ..+..++-.++.+. . ....++++.+...+.+. +|.+|..++..|....
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 111111 2234456778888888888 88889999998761 1 24568899999999998 9999999999999888
Q ss_pred hhCChhHHHHhhhhhHHHHHhhhCCC--CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCC
Q 000200 432 ETSSKAAVLKVHKDYVPICMECLNDG--TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 509 (1871)
Q Consensus 432 ~~~~~~~~~~~~k~~~~~l~k~l~Ds--~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~ 509 (1871)
+......+......+++.++.+++|. +++||.+|..+++.++..++.. + + ...-+.-+
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~-~----~--~~~~~~~l------------- 218 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN-F----D--KESERHFI------------- 218 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH-H----T--SHHHHHHH-------------
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHh-h----h--hhHHHHHH-------------
Confidence 76533334455577899999999999 7999999999998876322100 0 0 00000000
Q ss_pred CCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 000200 510 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 589 (1871)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 589 (1871)
T Consensus 219 -------------------------------------------------------------------------------- 218 (462)
T 1ibr_B 219 -------------------------------------------------------------------------------- 218 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhc-cchhHH-HHHHHHHhcCCCccchHHHHHHHHHHH
Q 000200 590 SLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN-LDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVI 667 (1871)
Q Consensus 590 s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~-~~~~~~-~lvr~l~~~PgwkesNfqV~~~~leil 667 (1871)
-..+...+.+.++..|..+++-|....+.... ...... -++..+.. ..+|.+-.|....++++
T Consensus 219 -------------~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 219 -------------MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE--AMKSDIDEVALQGIEFW 283 (462)
T ss_dssp -------------HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH--HHHCSSHHHHHHHHHHH
T ss_pred -------------HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHH
Confidence 01111233455666777777777766655221 111222 23332221 23566777888888888
Q ss_pred HHHHHhc-------------------C--CCCccchhhhccchhhcccc---------chhhhHHHHHHHHHHHhhchHh
Q 000200 668 NYLAATA-------------------T--KFPKKCVVLCLLGISERVAD---------IKTRAHAMKCLTTFSEAVGPGF 717 (1871)
Q Consensus 668 ~~la~~~-------------------~--~fs~~~~~~~l~~lveKlgD---------~K~r~~a~e~L~~~aE~~~~~~ 717 (1871)
..+++.. . .+.+.....+++.++..+.+ ...|..+..+|..+++..+ +.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~ 362 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD 362 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH
Confidence 7777542 0 11122234456666555543 3689999999999999887 55
Q ss_pred HHHHHHHhh---hhcCChhhHHHHHHHHHHHHHHhccCcc--chHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc
Q 000200 718 IFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL--KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 792 (1871)
Q Consensus 718 V~~~l~~~~---~~~KnPKv~~e~l~wl~~ai~eFG~~~~--~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~ 792 (1871)
++..+++.+ ..+.+++++..++..++.+.+.++...+ .+..++..+..+ |.+.++.||.+|...|+.+-.++|+
T Consensus 363 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~-l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL-MKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhccc
Confidence 555555433 4678999999999999998874332222 236788888887 9999999999999999999999998
Q ss_pred hh--HhhhhcchHHHHHHH
Q 000200 793 DI--KGFLADVKPALLSAL 809 (1871)
Q Consensus 793 ~l--~~~l~dlkpall~~i 809 (1871)
.+ ..|+..+=|.++..|
T Consensus 442 ~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 442 AAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp GCCSTTTHHHHHHHHHCC-
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 76 467666656555444
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.84 E-value=4.9e-07 Score=116.99 Aligned_cols=386 Identities=11% Similarity=0.107 Sum_probs=251.0
Q ss_pred hHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhh
Q 000200 605 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 684 (1871)
Q Consensus 605 ~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~ 684 (1871)
++.+.|.+.+-..|.+++..+.-..-...+. ...++..+ + -+.++|+.+-+.+.-.+..++...+. .+.+
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~---~~~~~~vi-~--l~~s~~~~~Krl~yl~l~~~~~~~~e----~~~l 86 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGKDV---SSLFPDVV-N--CMQTDNLELKKLVYLYLMNYAKSQPD----MAIM 86 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC---GGGHHHHH-H--TTSSSCHHHHHHHHHHHHHHHHHSHH----HHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh---HHHHHHHH-H--HhCCCCHHHHHHHHHHHHHHcccCch----HHHH
Confidence 4667788888889999999988544332221 12222222 2 25788999998888888877764221 2345
Q ss_pred hccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHH
Q 000200 685 CLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDF 762 (1871)
Q Consensus 685 ~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~ 762 (1871)
+++.+..-+.|. -.|..|-.+|..+....-.++++..+...+ .+.+|-|+..++..+..+.+ .+...+.-..+++.
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDS 164 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHh-hChhhcccccHHHH
Confidence 566666556663 356665444433332223345566676664 79999999999999999887 33443433468889
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhCch---------hHhhh---hcchHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000200 763 CKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 830 (1871)
Q Consensus 763 ~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~---------l~~~l---~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~ 830 (1871)
+..+ |.+.|+.||.+|+.+|+.+...-+.. +...+ .+..|-.+..|=.-+.+... .. .
T Consensus 165 l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~-~----- 234 (591)
T 2vgl_B 165 LRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD-D----- 234 (591)
T ss_dssp HHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS-H-----
T ss_pred HHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC-h-----
Confidence 9998 99999999999999999987654322 11111 12122211111122233210 00 0
Q ss_pred ccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCC--CCCc----cchHHHHhhhc
Q 000200 831 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ--PAGT----GELFGGLRGRL 904 (1871)
Q Consensus 831 ~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~--p~~~----geL~~aLk~rl 904 (1871)
+-..++-+.+...+.+.++-+|.||...+..+. +.+. |... +.+...|. .|
T Consensus 235 ------------------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~-~L 291 (591)
T 2vgl_B 235 ------------------REAQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLV-TL 291 (591)
T ss_dssp ------------------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHH-HH
T ss_pred ------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHH-HH
Confidence 001122234556688999999999998886654 2231 1111 12223333 34
Q ss_pred cchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhccc
Q 000200 905 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAK 984 (1871)
Q Consensus 905 ~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~ 984 (1871)
.+++.++.-.|++.++.++..-..-+..|.+.++ -.+.|. ..||..+++.|-.++...+.+.+++.+.+++.+.
T Consensus 292 ~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~----~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~- 365 (591)
T 2vgl_B 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF----VKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEV- 365 (591)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS----CCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-
T ss_pred hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe----eccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-
Confidence 5678899999999999999876666777766542 234555 9999999999999888888888888888888754
Q ss_pred CCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 000200 985 LGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1871)
Q Consensus 985 ~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1871)
+++.|.++..+|...-...+ +....++..++..|.|....||+.+-.++..++....
T Consensus 366 -d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 366 -DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp -CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 57899999999886554432 2345556668888899999999988888888877654
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.68 E-value=9.7e-07 Score=112.19 Aligned_cols=376 Identities=12% Similarity=0.090 Sum_probs=244.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CC--hHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~d--y~eL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.+.+.+.+..|..|.+|+..|..+++...-.+ .. -..++..|-..+.+. |..+...|+.+++.|+.+-. .+..+
T Consensus 91 ~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~ 169 (530)
T 1wa5_B 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVV 169 (530)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHH
Confidence 68888999999999999999999875321110 00 023577788888875 99999999999999998532 12222
Q ss_pred -hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh
Q 000200 364 -SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 364 -~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
....+|.++.-+++..+.|++.+..+|-.++.. ... -..+++.+...+.+.++.++..++..|........+
T Consensus 170 ~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 170 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 246799999999999999999999999888753 100 114577888889998899998887777766644311
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1871)
.........++|.++.++.+.+++||..|+.+|+.+..... . .+..+++..
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-------------~---~~~~~~~~~------------- 299 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-------------E---AIQAVIDVR------------- 299 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-------------H---HHHHHHHTT-------------
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-------------H---HHHHHHhcC-------------
Confidence 11112346789999999999999999999999987753211 0 111111100
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
T Consensus 300 -------------------------------------------------------------------------------- 299 (530)
T 1wa5_B 300 -------------------------------------------------------------------------------- 299 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
+-+.++..|.+.+|..|..|+..+.......+.. ......|+.+| .+.+..|....+.+|..+
T Consensus 300 -----~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 300 -----IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------SSPKENIKKEACWTISNI 368 (530)
T ss_dssp -----CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT------TCSCHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH------cCCCHHHHHHHHHHHHHH
Confidence 0122344455566777777766665444221110 01234445444 345788888888888877
Q ss_pred HHhcCCCCccch-hhhccchhhcc--ccchhhhHHHHHHHHHHHhhch--Hh--------HHHHHHHhhhhcCChhhHHH
Q 000200 671 AATATKFPKKCV-VLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGP--GF--------IFERLYKIMKDHKNPKVLSE 737 (1871)
Q Consensus 671 a~~~~~fs~~~~-~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~--~~--------V~~~l~~~~~~~KnPKv~~e 737 (1871)
+......-...+ .-+++.+++-+ ++.+++..+..+|..++...++ ++ ++..++.. ..+.+|+++..
T Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~ 447 (530)
T 1wa5_B 369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL-LEIADNRIIEV 447 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHH-TTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHH-HhCCCHHHHHH
Confidence 642111000000 12444454444 4567899999999999886554 32 34445554 36789999999
Q ss_pred HHHHHHHHHHHhccC------ccc-h------HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHh
Q 000200 738 GILWMVSAVEDFGVS------HLK-L------KDLIDFCKDTGLQSSAAATRNATIKLLGALHK 788 (1871)
Q Consensus 738 ~l~wl~~ai~eFG~~------~~~-~------K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~ 788 (1871)
++..|..++....-. .++ . ...++.+..+ +.+.|+.|+..|..++..+|.
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L-~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHCC
Confidence 999988888643210 111 1 1235567777 899999999999988765553
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.65 E-value=6.9e-07 Score=110.01 Aligned_cols=377 Identities=12% Similarity=0.088 Sum_probs=240.8
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHh-hh-ccc------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEA-VQ-NLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 675 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~-~~-~~~------~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~ 675 (1871)
+.++..|.+.+...|..|+..+.+.+.. .+ ... .....|++.|. .+.|..|+...+.++..++....
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 5678889999999999999999987652 11 110 22445555553 12378899999999988875211
Q ss_pred CCCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhhc--hH-----hHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 000200 676 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG-----FIFERLYKIMKDHKNPKVLSEGILWMVSA 745 (1871)
Q Consensus 676 ~fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~~--~~-----~V~~~l~~~~~~~KnPKv~~e~l~wl~~a 745 (1871)
...+..+ .-+++.++.-+.+ ..+|..+..+|..+++... -. -++..++..+....++.++..++..+..+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1111111 2255556655544 5789999999998887421 11 13556666654457899999999888887
Q ss_pred HHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 746 VEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 746 i~eFG~--~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
....+. ...-+..+++.+... +.+.|+.||..|...|+.+-....+ .... +-+
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~----~~~-------- 232 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQA----VID-------- 232 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHH----HHH--------
T ss_pred hCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHH----HHH--------
Confidence 753311 111236788888887 9999999999998888765432110 0000 000
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhh
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 903 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~r 903 (1871)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|...
T Consensus 233 ----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 233 ----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp ----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 0123467778889999999999999999875321111100001367788888
Q ss_pred ccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc---ch-----hhhH
Q 000200 904 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LD-----KMVP 974 (1871)
Q Consensus 904 l~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g---l~-----~~~~ 974 (1871)
|.+.|..+...|+.+++.|+.+-........ ..++|.++..|.|..+.||.++..+|..+..... .. .+++
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 8899999999999999999874322233332 3789999999999999999999999988875421 11 3455
Q ss_pred HHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhhhh------hHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 975 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 975 ~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~~~~------~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
.+...|.++ ++..|..++.-|..-+..... ...+...+ ..+...+.+.+.+||+.|..+|..+.
T Consensus 365 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 365 PLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666666644 567777776555433321110 01111111 22334457778888888888877654
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.62 E-value=5.4e-07 Score=114.56 Aligned_cols=380 Identities=12% Similarity=0.084 Sum_probs=244.8
Q ss_pred cHhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHHhc
Q 000200 603 PADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSE-KNVQVQQQVIEVINYLAATA 674 (1871)
Q Consensus 603 ~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~-~-----~~~~~~lvr~l~~~Pgwke-sNfqV~~~~leil~~la~~~ 674 (1871)
-+.++..|.+.++..|..|+..|.+.+.... + . ......|+++| ++ .|..|+...+.+|..++...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L------~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM------RENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT------STTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999999987765421 1 0 01123344333 33 37889988888888776521
Q ss_pred CCCCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhh--chHh-----HHHHHHHhhhhcCChhhHHHHHHHHHH
Q 000200 675 TKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAV--GPGF-----IFERLYKIMKDHKNPKVLSEGILWMVS 744 (1871)
Q Consensus 675 ~~fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~--~~~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ 744 (1871)
+......+ .-+++.++.-+. +..++..|..+|..++... .... ++..++..+ .+.++.++..++..|..
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 11111100 124555555554 4678999999999988642 1122 344555554 45889999888887777
Q ss_pred HHHHhcc--CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCC
Q 000200 745 AVEDFGV--SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 822 (1871)
Q Consensus 745 ai~eFG~--~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p 822 (1871)
+....+. ...-...+++.+... |.+.|+.||..|...|+.+-.... .....+ + .
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~------------~~~~~~---~-~------- 297 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQ------------EAIQAV---I-D------- 297 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCH------------HHHHHH---H-H-------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCH------------HHHHHH---H-h-------
Confidence 7653311 112235778888887 999999999999999987653211 111100 0 0
Q ss_pred CCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh
Q 000200 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 902 (1871)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~ 902 (1871)
..+-+.++.-+.+.+|.+|..|+..+..|........+.-.-..++..|..
T Consensus 298 -----------------------------~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 298 -----------------------------VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp -----------------------------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred -----------------------------cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 012356777888999999999999999887421110000000236778888
Q ss_pred hccchhHhHHHHHHHHHHHHHHhcChhHHhhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc----------hh
Q 000200 903 RLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DK 971 (1871)
Q Consensus 903 rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl----------~~ 971 (1871)
.|.+.+..+...|+.+|+.|+.+-........ ..++|.++..|.+....+|.++..+|..+....+- ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 88899999999999999999874322222222 46899999999999999999999999988765321 12
Q ss_pred hhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchh------hhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 972 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 972 ~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~------~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
+++.+...|.++ ++..|..++.-|..-+..... ..... ..+..+...+.|.+.+||+.|..+|.
T Consensus 429 ~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 429 CIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp CHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556667777654 577777777666544432211 01111 11334556678999999999998887
Q ss_pred HHHHhcC
Q 000200 1038 EILRAGG 1044 (1871)
Q Consensus 1038 ~~m~~~G 1044 (1871)
.+...-.
T Consensus 507 ~~~~~~~ 513 (530)
T 1wa5_B 507 TYFGEEE 513 (530)
T ss_dssp HHSSSCC
T ss_pred HHCCccc
Confidence 6665433
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.58 E-value=7.6e-06 Score=100.66 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=128.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHH-cccCCCCCCcc-chHHHHhhhccch-hHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 856 PTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTG-ELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 856 ~~l~~~l~d~~WK~RkEaLe~v~~il~~-ankrI~p~~~g-eL~~aLk~rl~Ds-Nk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
+.++..+.+.+..+|..|+..+.+++.. .++.++.-.-. .++..|-..|.+. |..+...|+.+++.++..-......
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4588889999999999999999999862 23332221112 5778888888777 8999999999999998743222222
Q ss_pred h-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 933 S-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 933 ~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
. ...++|.++..|.+..+.+|..|..+|..+..... . ...++.+...|.+. .++..|..+...|. .+...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~-~l~~~ 180 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS-NLCRG 180 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH-HHHCC
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH-HHhCC
Confidence 2 24689999999999999999999999988775421 0 23566677777642 25677777765555 44433
Q ss_pred C-C-C--cchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1005 S-G-F--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1005 ~-~-~--~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
. . . ......+.+++..|.+.+.+||..|..+|..+..
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 2 1 1 1234566668888889999999988887766543
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.56 E-value=1.3e-06 Score=110.76 Aligned_cols=379 Identities=12% Similarity=0.088 Sum_probs=245.2
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhh-c-c-----chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-N-L-----DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~-~-~-----~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
+.++..|.+.++..|+.|...|...+.... + . ......|+.+|. .+.|..|+...+.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 567889999999999999999987765422 1 1 122455666663 223478888888888888763211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHhhch--Hh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~--~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ai 746 (1871)
.....+ .-+++.++.-+. +..++..+..+|..++..... .. ++..++..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 124555555554 456899999999998863211 12 34566666557789999998888877776
Q ss_pred HHhcc-CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCc
Q 000200 747 EDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 825 (1871)
Q Consensus 747 ~eFG~-~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~ 825 (1871)
..... ...-...+++.+... |.+.|+.||..|...|+.+-....+.+..++ .
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------~---------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKIQAVI----------------E---------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH----------------H----------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH----------------H----------
Confidence 54311 112236788888888 9999999999999988765422111111100 0
Q ss_pred cccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc
Q 000200 826 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 905 (1871)
Q Consensus 826 R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~ 905 (1871)
..+-+.|+.-+.+.+|.+|..|+..|..|........+.-.-..++..|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 012346788888999999999999999888521111110000235677777787
Q ss_pred ch-hHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccc--------hhhhHH
Q 000200 906 DS-NKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 975 (1871)
Q Consensus 906 Ds-Nk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl--------~~~~~~ 975 (1871)
+. +..+...|+.+++.|+.+-....... ...++|.++..|.+....+|..|..+|..+....+- ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 77 99999999999999987422222222 337899999999999999999999999988766211 234556
Q ss_pred HHHHHhcccCCcchHHHHHHHHHHHhccCCC--------Ccchhh------hhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 976 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 976 i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--------~~~~~~------~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+...|.++ ++..+..++.-|..-+..... ...... .+..+...+.+.+.+|++.|..+|..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 66767654 566777666555544321110 011111 23445667789999999999999987665
Q ss_pred h
Q 000200 1042 A 1042 (1871)
Q Consensus 1042 ~ 1042 (1871)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 4
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.52 E-value=1.5e-05 Score=101.11 Aligned_cols=378 Identities=11% Similarity=0.088 Sum_probs=237.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCC---ChHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhccccccc-
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPG---DFTEVCRTLKKLITDVN-IAVAVEAIQAIGNLARGLRTHFSGS- 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~---dy~eL~~~Lkk~l~DsN-v~vv~~A~~~i~~lA~gLr~~F~~y- 363 (1871)
.+.+.+.+..|..|.+|+..|..+++...-.+. --..++..|.+.+.+.+ ..+...|+.+|+.|+.+-...-...
T Consensus 78 ~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 157 (528)
T 4b8j_A 78 AMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVI 157 (528)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 688899999999999999999998753321110 01235777778888555 8999999999999998522111111
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh------hhHHHHHHHh-hcCCchhHHHHHHHHHHHHhhCCh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSV-KNKVPLVRSLTLNWVTFCIETSSK 436 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~------~~~e~i~~al-~~KnP~vk~etl~~L~r~l~~~~~ 436 (1871)
....+|.++.-+++..+.|++.+..+|-.++.. ..... ..++.++..| .+.++.++..++..|.......+.
T Consensus 158 ~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred hCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 236899999999999999999999999988753 11111 2466777788 678899998888777766654322
Q ss_pred hHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000200 437 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 516 (1871)
Q Consensus 437 ~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~ 516 (1871)
.. ......++|.++.++.+.+++||..|+.+|+.+... ... .+..+++..
T Consensus 237 ~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~--------------~~~~~~~~g------------- 286 (528)
T 4b8j_A 237 PS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TND--------------KIQAVIEAG------------- 286 (528)
T ss_dssp CC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHH--------------HHHHHHHTT-------------
T ss_pred Cc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHH--------------HHHHHHHcC-------------
Confidence 11 123467899999999999999999999998876531 110 111111110
Q ss_pred cCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHH
Q 000200 517 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 596 (1871)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 596 (1871)
T Consensus 287 -------------------------------------------------------------------------------- 286 (528)
T 4b8j_A 287 -------------------------------------------------------------------------------- 286 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Q 000200 597 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 670 (1871)
Q Consensus 597 ~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~l 670 (1871)
+-+.++..|.+.++..|..|+..|.......+.. ......|+.+|.. +.+..|......+|..+
T Consensus 287 -----~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 287 -----VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-----NLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-----CCcHHHHHHHHHHHHHH
Confidence 0011223333444444555544443332211000 1124556666541 12678888888888877
Q ss_pred HHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHh--------HHHHHHHhhhhcCChhhHHHHH
Q 000200 671 AATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSEGI 739 (1871)
Q Consensus 671 a~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~--------V~~~l~~~~~~~KnPKv~~e~l 739 (1871)
+......-... -.-+++.+++-+ +|.+++..+..+|..++....++. ++..++.. ..+.+++++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l-L~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL-LICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHH
Confidence 64211000000 012344454444 356889999999999888644432 23445555 4679999999999
Q ss_pred HHHHHHHHHhcc-------------CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 740 LWMVSAVEDFGV-------------SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 740 ~wl~~ai~eFG~-------------~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
..|..++....- ..+.--..++.+..+ ..|.|+.|+..|..++..++..
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL-QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHCCC
Confidence 988888764321 011111234456666 8899999999999988766543
No 29
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.50 E-value=1.2e-06 Score=117.42 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=161.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcC-CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--ccccccchh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~p-Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gL--r~~F~~y~~ 365 (1871)
+.+..+..++=.+|+++-..+-.++... -...-.| .++..|++-+.|-+-. --|+..++.||+-. .+.+.+|.-
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 3455666666788999999988876533 2222234 6999999999877666 88999999999554 568999999
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh---hhhHHHHHHHhhcCC-chhHHHHHHHHHHHHhhCChhHHHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLK 441 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l---~~~~e~i~~al~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~ 441 (1871)
.++|.+|+.+.||++.|++|+..|+++++.. ++. ..+++.+..+|++.. .|.|..++.++.+..+.. +..+..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~ 171 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNA--VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVAL 171 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 9999999999999999999999999999986 454 456788899998764 999999999999999876 444556
Q ss_pred hhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhc
Q 000200 442 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 487 (1871)
Q Consensus 442 ~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~ 487 (1871)
.+..++|.+..++-|+.++|.++|.++|-.+-.++|.+.+.+++..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~ 217 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS 217 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH
Confidence 6789999999999999999999999999999999998888888764
No 30
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.47 E-value=0.00065 Score=92.69 Aligned_cols=263 Identities=10% Similarity=0.091 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchHHHHH
Q 000200 732 PKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLS 807 (1871)
Q Consensus 732 PKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkpall~ 807 (1871)
|+|+..++.-+..+.++++-...+ +..++..+-.+ +.+ ....+|...+..+|.+...++ +....++..+=+.++.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~-l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHAS-LNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 444444444444444443321111 13344444444 444 356888999999999988776 5566666665455555
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC
Q 000200 808 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 887 (1871)
Q Consensus 808 ~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr 887 (1871)
.++.-.+ . ... .++ +-...-+.++.+..++..-+..
T Consensus 636 ~l~~~~~-~---~~~--------------------------------~~~--------~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 636 ELQAICQ-A---DSK--------------------------------TPA--------ARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHHHHT-C--------------------------------------CHH--------HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHh-c---CCC--------------------------------Chh--------hHHHHHHHHHHHHHHHhhcCCC
Confidence 5443211 1 000 000 0112334555555555432222
Q ss_pred CCCC------------CccchHHHHhhhccch--hHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHH
Q 000200 888 IQPA------------GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR 953 (1871)
Q Consensus 888 I~p~------------~~geL~~aLk~rl~Ds--Nk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR 953 (1871)
+.++ ...+++..+..-+.+. +..+...+..+++.++.++|..|.+|.-.+++.++..+....-
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~--- 748 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC--- 748 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence 1110 0245666666655432 4578899999999999999999999988888888888776432
Q ss_pred HHHHHHHHHHHHhccch--------hhhHH----HHHHHhc-----ccCCcchHHHHHHHHHHHhccCCC----Ccc-hh
Q 000200 954 ECTLTVLDAWLAAVHLD--------KMVPY----VTTALTD-----AKLGAEGRKDLFDWLSKQLTGLSG----FPD-AA 1011 (1871)
Q Consensus 954 ~aa~~alda~~~~~gl~--------~~~~~----i~~~L~~-----~~~~p~~r~e~l~wL~~~l~~~~~----~~~-~~ 1011 (1871)
.+++..+..++...|-+ .+++. +...|.. ...+|+.+.+.+.++.+.+...+. ++. +.
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 46888888888877764 22221 1122221 123689999999999998877654 222 44
Q ss_pred hhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1012 HLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1012 ~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.++.-+..+|.-...++.+++-.++..++..
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 4444455566545555667777788776665
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.43 E-value=0.0003 Score=94.08 Aligned_cols=497 Identities=12% Similarity=0.079 Sum_probs=272.6
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc----
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 397 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---- 397 (1871)
.|..=+..|-..|.+.+..+...+++++..+.+. -.....+|.++.-+++..+.|++.+..+|-.++...
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444455666666666766777777777655332 234778999999999999999999999999887530
Q ss_pred -CCChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 398 -CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 398 -~~~l~~~~e~i~~al~~K-nP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
......+++.+...|.+. ++.+|..++..|.. |.... .....+. ...+|.++.+|.+.++.||..|+.+|..|..
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 011235778888888754 89999999988887 43332 1111121 3589999999999999999999999999886
Q ss_pred HhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCC
Q 000200 475 SVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 554 (1871)
Q Consensus 475 ~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 554 (1871)
.-.+. +..+.+ . +
T Consensus 264 ~~~~~-------------~~~v~~---~-g-------------------------------------------------- 276 (780)
T 2z6g_A 264 HQEGA-------------KMAVRL---A-G-------------------------------------------------- 276 (780)
T ss_dssp HSTTH-------------HHHHHH---T-T--------------------------------------------------
T ss_pred CChhh-------------HHHHHH---c-C--------------------------------------------------
Confidence 53211 111110 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHh---
Q 000200 555 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA--- 631 (1871)
Q Consensus 555 ~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~--- 631 (1871)
+ -+.++..|.+.+|+.|-.+...+..+...
T Consensus 277 ---------------------------------------~--------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 277 ---------------------------------------G--------LQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp ---------------------------------------H--------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------C--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 0 00112222223333333333322211100
Q ss_pred ----hhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccchhhhHHHHHHH
Q 000200 632 ----VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLT 707 (1871)
Q Consensus 632 ----~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~K~r~~a~e~L~ 707 (1871)
+-. ....+.|++.+... +.-.+......++..++. +. ..+.
T Consensus 310 ~~~~i~~-~~~i~~Lv~lL~~~-----~~~~~~~~a~~aL~~Ls~-~~---------------------~~~~------- 354 (780)
T 2z6g_A 310 SKLIILA-SGGPQALVNIMRTY-----TYEKLLWTTSRVLKVLSV-CS---------------------SNKP------- 354 (780)
T ss_dssp HHHHHHT-TTHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHT-ST---------------------THHH-------
T ss_pred HHHHHHH-cCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhc-Ch---------------------HHHH-------
Confidence 000 12245566655311 122222333444443332 10 0000
Q ss_pred HHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Q 000200 708 TFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALH 787 (1871)
Q Consensus 708 ~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly 787 (1871)
.+.+. -++..++..+ .+.++.++..++..+..+..... .......++..+... |.+.|+.||..|...|+.+-
T Consensus 355 ~i~~~----g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 355 AIVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp HHHHT----THHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHh----chHHHHHHHH-cCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHH
Confidence 00110 1233344433 34567777777666655554332 223456788888888 99999999999999998764
Q ss_pred hhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCC-
Q 000200 788 KFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES- 864 (1871)
Q Consensus 788 ~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d- 864 (1871)
.. .+..+..+ .+.=| .|+.-+.+
T Consensus 428 ~~-~~~~~~~i~~~g~i~-----------------------------------------------------~Lv~lL~~~ 453 (780)
T 2z6g_A 428 CN-NYKNKMMVCQVGGIE-----------------------------------------------------ALVRTVLRA 453 (780)
T ss_dssp SS-CHHHHHHHHTTTHHH-----------------------------------------------------HHHHHHHHH
T ss_pred hC-CHHHHHHHHHCCCHH-----------------------------------------------------HHHHHHHcc
Confidence 31 11122111 11112 23333332
Q ss_pred CCh-HHHHHHHHHHHHHHHHc------ccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhh--
Q 000200 865 PDW-KVRLESIEAVNKILEEA------NKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS-- 934 (1871)
Q Consensus 865 ~~W-K~RkEaLe~v~~il~~a------nkrI~p~~~geL~~aLk~rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~-- 934 (1871)
.+| .+|..|+..|..|.... ...+.. ...+..|-..|.+.+. .++..|+.+++.|+. ++......
T Consensus 454 ~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~---~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~ 528 (780)
T 2z6g_A 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRL---HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLRE 528 (780)
T ss_dssp TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH---TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH---cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHH
Confidence 234 67777777777664210 001111 1235667677766664 888999999999984 55444322
Q ss_pred hhhhHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHh------ccchhhhHHHHHHHhcccCC
Q 000200 935 KGVLSDILKCLGDNK----------------------KHMRECTLTVLDAWLAA------VHLDKMVPYVTTALTDAKLG 986 (1871)
Q Consensus 935 k~l~~~il~~l~D~K----------------------~~vR~aa~~alda~~~~------~gl~~~~~~i~~~L~~~~~~ 986 (1871)
..++|.++..|.+.. ..++.++..||...... ..-...++.+...|.++ +
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~ 606 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--I 606 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--C
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--C
Confidence 257788888886643 34566666666653210 10123456667777754 5
Q ss_pred cchHHHHHHHHHHHhccCCCC-cch--hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 000200 987 AEGRKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1044 (1871)
Q Consensus 987 p~~r~e~l~wL~~~l~~~~~~-~~~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G 1044 (1871)
+..|.....-|..-. ..+.. ..+ ...+.++...+.|++.+||..|..+|..+...-.
T Consensus 607 ~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 607 ENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 667777666555332 21111 011 1245668888999999999999999998877554
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.40 E-value=0.00036 Score=90.82 Aligned_cols=83 Identities=12% Similarity=0.034 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHH
Q 000200 384 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 463 (1871)
Q Consensus 384 eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~ 463 (1871)
+++...+-.+. .| .......-++...+.+++...|.-...++...+...+ . ++--.+..+.+-|+|+++-||-
T Consensus 53 ~~l~kli~~~~-~G-~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e----~~~l~in~l~kDL~~~n~~vr~ 125 (618)
T 1w63_A 53 RNVAKLLYMHM-LG-YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQ-D----VHLLMTNCIKNDLNHSTQFVQG 125 (618)
T ss_dssp HHHHHHHHHHH-TT-CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH-H----HHHHHHHHHHHHHSCSSSHHHH
T ss_pred HHHHHHHHHHH-cC-CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc-H----HHHHHHHHHHHhcCCCCHhHHH
Confidence 44555554443 22 3455566778888889999999888888777775432 1 1234678888999999999998
Q ss_pred HHHHHHHHHH
Q 000200 464 AAFSVLAAIA 473 (1871)
Q Consensus 464 aA~~~l~~lm 473 (1871)
.|..+|+.+.
T Consensus 126 lAL~~L~~i~ 135 (618)
T 1w63_A 126 LALCTLGCMG 135 (618)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888888764
No 33
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.31 E-value=0.045 Score=74.43 Aligned_cols=277 Identities=14% Similarity=0.173 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHHHhhchH---hHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC
Q 000200 698 TRAHAMKCLTTFSEAVGPG---FIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS 770 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~~~~---~V~~~l~~~~~---~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~ 770 (1871)
.|..+.++|..+++..+.. ++++.+...+. .+.+++.+..++-+++.+.+...-..-+ +..++..+.. +.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCC
Confidence 3677888999999877632 33333333321 4568888888887777766543322111 2456665553 566
Q ss_pred ccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccc
Q 000200 771 SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 850 (1871)
Q Consensus 771 sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDI 850 (1871)
.+|.||..++.++|..-.|+++.- .++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~-------------------------------------------------- 529 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHP-VMINS-------------------------------------------------- 529 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCH-HHHTT--------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCH-HHHHH--------------------------------------------------
Confidence 799999999999999888775321 22211
Q ss_pred ccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc--chhHhHHHHHHHHHHHHHHhcC-
Q 000200 851 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG- 927 (1871)
Q Consensus 851 s~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~--DsNk~lv~~al~ii~~lA~amG- 927 (1871)
+-+.++..|.+ -++|..|..++..++++..+.+.|-. .+|+..|-.-+. +.+.......+.+++.++.++|
T Consensus 530 ---vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 530 ---VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp ---THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred ---HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 11234444443 36788899999999988767788875 888888877664 3455677888999999999998
Q ss_pred hhHHhhhhhhhHHHHHHhcc---C--chhHH---HHHHHHHHHHHHhccchhhhHHHHHHH--hcccCCcchHHHHHHHH
Q 000200 928 PAVEKSSKGVLSDILKCLGD---N--KKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTAL--TDAKLGAEGRKDLFDWL 997 (1871)
Q Consensus 928 ~~~~k~~k~l~~~il~~l~D---~--K~~vR---~aa~~alda~~~~~gl~~~~~~i~~~L--~~~~~~p~~r~e~l~wL 997 (1871)
..+.+|...++++++..+.. + .+..+ ...+++|..++..++-..- ..+.+.- ...+ .|..+.......
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~ 681 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVL 681 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHH
Confidence 77889999999999888752 1 22233 3455666666666542100 0000000 0000 000011122222
Q ss_pred HHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHH
Q 000200 998 SKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1046 (1871)
Q Consensus 998 ~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~ 1046 (1871)
.+ ..+.+.-++..-. .+.+|+..+..++..++..+|.+
T Consensus 682 ~~----------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 682 QQ----------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp HH----------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred HH----------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc
Confidence 21 2222222332222 35689999999999998888854
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.27 E-value=0.00036 Score=93.25 Aligned_cols=518 Identities=13% Similarity=0.077 Sum_probs=292.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-cchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~-~y~~~~ 367 (1871)
.+...|.+.....|..+++.+..+. ...+. ...+..|.+++.+.|..|...|+.+|+.|+..-..... .....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~-~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQD-DAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhh-HHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5888888888888888887765431 11221 34677777777788999999999999999975421110 012468
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC----CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHh
Q 000200 368 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 442 (1871)
Q Consensus 368 ~~~lLeklKEK-K~~V~eAl~~aLda~~~~~~----~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~ 442 (1871)
++.|++.|+.. .+.++..+..+|-.+..... +.-...++.+...|++.++.+|.+++..|........... ..+
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~v 272 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MAV 272 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HHH
Confidence 99999999854 78888888888877643200 0001356778889999999999999999988776543211 112
Q ss_pred h-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCC
Q 000200 443 H-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 521 (1871)
Q Consensus 443 ~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~ 521 (1871)
. ...++.++.+|.+.+..||..+..+|..+.. |.......+...+. -..+..++...
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~------------------ 330 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY------------------ 330 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC------------------
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC------------------
Confidence 1 4589999999999999999999999885542 21111111100000 00111111000
Q ss_pred CCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhcc
Q 000200 522 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSL 601 (1871)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l 601 (1871)
+.+.....+.
T Consensus 331 --------------------------------------------------------------------~~~~~~~~a~-- 340 (780)
T 2z6g_A 331 --------------------------------------------------------------------TYEKLLWTTS-- 340 (780)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHH--
T ss_pred --------------------------------------------------------------------CHHHHHHHHH--
Confidence 0011111110
Q ss_pred CcHhHHHhhhh-ccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCcc
Q 000200 602 IPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK 680 (1871)
Q Consensus 602 ~~~~i~~~L~s-~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~ 680 (1871)
.++..|.. ...+..+ ++. .....|+.++ .+.+..+....+.++..++.....+.
T Consensus 341 ---~aL~~Ls~~~~~~~~i---------~~~-----g~l~~Ll~lL------~~~~~~~~~~a~~~L~~L~~~~~~~~-- 395 (780)
T 2z6g_A 341 ---RVLKVLSVCSSNKPAI---------VEA-----GGMQALGLHL------TDPSQRLVQNCLWTLRNLSDAATKQE-- 395 (780)
T ss_dssp ---HHHHHHHTSTTHHHHH---------HHT-----THHHHHGGGT------TCSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred ---HHHHHhhcChHHHHHH---------HHh-----chHHHHHHHH------cCCchHHHHHHHHHHHHHhccchhhh--
Confidence 11111111 1111111 000 1123333333 34466778888888888876543321
Q ss_pred chhhhccchhhccc--cchhhhHHHHHHHHHHHhhch-------HhHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHHhc
Q 000200 681 CVVLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNP-KVLSEGILWMVSAVEDFG 750 (1871)
Q Consensus 681 ~~~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~~~~-------~~V~~~l~~~~~~~KnP-Kv~~e~l~wl~~ai~eFG 750 (1871)
....+++.++.-+. |..++..+..+|..++..... .-++..++..+....++ .++..++..|..+....+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 12345666665444 456888888888877653210 12456666666544444 888888877765532111
Q ss_pred cC-----ccchHhHHHHHhhhcCCCccH-HHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCC
Q 000200 751 VS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTV 822 (1871)
Q Consensus 751 ~~-----~~~~K~li~~~k~~~l~~sN~-~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p 822 (1871)
-. .+--...++.+... |.+.+. .||.+|..+|+.+-. |+.-+..+ .+.=|.++..|...-..+..+..-
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 552 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhh
Confidence 00 00011234555566 777774 999999999998874 55544444 345577777776543222100000
Q ss_pred CCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH-cc-cCCCCCCccchHHHH
Q 000200 823 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE-AN-KRIQPAGTGELFGGL 900 (1871)
Q Consensus 823 ~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~-an-krI~p~~~geL~~aL 900 (1871)
+ .+. -+ +.. +...-.+|..++..+..+... .| ..|.. ...+..|
T Consensus 553 a----------------l~n--q~---~~~----------~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~L 598 (780)
T 2z6g_A 553 G----------------GTQ--QQ---FVE----------GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPLF 598 (780)
T ss_dssp -----------------------C---CST----------TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHHH
T ss_pred c----------------ccc--ch---hhc----------ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHHH
Confidence 0 000 00 000 001122455566666554311 00 01211 2257778
Q ss_pred hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhh--hhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc
Q 000200 901 RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 968 (1871)
Q Consensus 901 k~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k--~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g 968 (1871)
...|.+.|.+++..|+.++..++. .+....... ..++.++..+.|....||..|..||..+.....
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 888889999999999999988863 244443322 367889999999999999999999999887654
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.25 E-value=1.6e-05 Score=88.29 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=136.8
Q ss_pred HhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 757 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 757 K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
...++.+... |.+.|+.||..|+..|+.+. . +
T Consensus 18 ~~~~~~L~~~-L~~~~~~vR~~A~~~L~~~~----~----------------------------~--------------- 49 (211)
T 3ltm_A 18 PEKVEMYIKN-LQDDSYYVRRAAAYALGKIG----D----------------------------E--------------- 49 (211)
T ss_dssp GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHC----C----------------------------G---------------
T ss_pred HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhC----C----------------------------c---------------
Confidence 4556666666 89999999999999887532 1 0
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
...+.|+..+.|.+|.+|..|+..+..+-. .+.+..|...|.|.|..+...|+
T Consensus 50 ----------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~ 102 (211)
T 3ltm_A 50 ----------------RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAA 102 (211)
T ss_dssp ----------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred ----------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence 013457777888999999999998876531 45677788888999999998888
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHH
Q 000200 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDW 996 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~w 996 (1871)
..++.+.. ...++.++..|.|..+.||.++..+|..+ |-...++.+...|.++ ++.+|..+...
T Consensus 103 ~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~a 166 (211)
T 3ltm_A 103 VALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADA 166 (211)
T ss_dssp HHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 88877632 23568888899999999999999998776 4456677778888755 57888888887
Q ss_pred HHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 997 LSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 997 L~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
|.+. . ....+..+...|.|.++.||.+|..+|..+-.
T Consensus 167 L~~~-~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 167 LGEI-G-------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHH-C-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHh-C-------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 7753 1 12344456667889999999999998875533
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.24 E-value=2.1e-05 Score=87.31 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=137.8
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.+...+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~ 82 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 82 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 357788899999999999999887643 3567788888899999999999999988752 356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+++.++|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++.-|.+.- . ...+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-------~~~~ 145 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D-------ERAV 145 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C-------HHHH
Confidence 8999999999999999988887765522 356788889999999999999888887651 1 2357
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhc
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 502 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~ 502 (1871)
+.+...++|.++.||.+|..+|+.+-.--.-..+..++.+=++.-|....+.+..
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8899999999999999999999987321112334555555566555555665554
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.23 E-value=2.3e-05 Score=86.26 Aligned_cols=178 Identities=19% Similarity=0.178 Sum_probs=134.5
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
+.|.+.+.+..|..|..|++.|..+.. .+.+..|...+.|.|..|...|+.+++.+.. ...
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~ 77 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERA 77 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHH
Confidence 468889999999999999999987642 2456777788889999999999999988742 256
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.+++.+.|..+.||.++..+|-.+.. .+.++.+...+++.+|.||..++..|.+.-. ...+
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~ 140 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAV 140 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHH
Confidence 8999999999999999988888766532 3578888899999999999998888776421 2457
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
+.+...++|.++.||.+|..+|+.+-.--....+..++.+=++.-|....+.+.
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 889999999999999999999998721111122444444445544444444443
No 38
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.21 E-value=0.03 Score=76.16 Aligned_cols=347 Identities=11% Similarity=0.077 Sum_probs=210.2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhcc-ccchhhhHHHHHHHHHHHhhc--hH---hHHHHHHHhhh
Q 000200 654 EKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV-ADIKTRAHAMKCLTTFSEAVG--PG---FIFERLYKIMK 727 (1871)
Q Consensus 654 esNfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKl-gD~K~r~~a~e~L~~~aE~~~--~~---~V~~~l~~~~~ 727 (1871)
..|.+.....+-++..+++.+..-.......+++.+..-. .++++|..+..++..|++-.. ++ .|+..++.++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 538 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL- 538 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-
Confidence 4577777888888888887654322333333444322111 357799999999999998643 33 3455556554
Q ss_pred hcCChhhHHHHHHHHHHHHHHhccCccc-hHhHHHHHhhhcCCC--ccHHHHHHHHHHHHHHHhhhC-chhHhhhhcchH
Q 000200 728 DHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKP 803 (1871)
Q Consensus 728 ~~KnPKv~~e~l~wl~~ai~eFG~~~~~-~K~li~~~k~~~l~~--sN~~VR~aAi~Ll~~ly~~~G-~~l~~~l~dlkp 803 (1871)
.+|+|+..|+.-+..+.++++-...+ +..++..+-.. +.+ .+..+|......+|.+-..+| +....+++.+=+
T Consensus 539 --~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~-l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~ 615 (963)
T 2x19_B 539 --GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV-LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLIS 615 (963)
T ss_dssp --TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34999999999999999887754333 36777776665 654 467899999999999988887 566677765544
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 000200 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEE 883 (1871)
Q Consensus 804 all~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ 883 (1871)
.+...++.-. +. +.. ++. -+.+...++.+..++..
T Consensus 616 ~l~~~l~~~~-~~----~~~--------------------------------~~~--------~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 616 PYIQQLEKLA-EE----IPN--------------------------------PSN--------KLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHH-SS----CSC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC----CCC--------------------------------HHH--------HHHHHHHHHHHHHHHHH
Confidence 4444444321 11 000 000 01122333333333332
Q ss_pred cccCCCCC---------------------CccchHHHHhhhcc-c-hhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHH
Q 000200 884 ANKRIQPA---------------------GTGELFGGLRGRLY-D-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 940 (1871)
Q Consensus 884 ankrI~p~---------------------~~geL~~aLk~rl~-D-sNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~ 940 (1871)
-..++... .+..+++.+..-+. + .|..+...++.+++.++..+|..|.+|.-.+++.
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 651 LDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp CCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred cCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 11111100 01112222222221 1 2347888899999999999999998887777777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccchh----hhHH----HHHH----Hh-cccCCcchHHHHHHHHHHHhccCCC-
Q 000200 941 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDK----MVPY----VTTA----LT-DAKLGAEGRKDLFDWLSKQLTGLSG- 1006 (1871)
Q Consensus 941 il~~l~D~K~~vR~aa~~alda~~~~~gl~~----~~~~----i~~~----L~-~~~~~p~~r~e~l~wL~~~l~~~~~- 1006 (1871)
++..+.... -.+.+..+..+....|.+. .++. +... +. +....|+.|.+.+.+|...+..++.
T Consensus 731 l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~ 807 (963)
T 2x19_B 731 LGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL 807 (963)
T ss_dssp HHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH
Confidence 776665421 1256666777766444332 2222 2221 11 2223589999999999988876653
Q ss_pred ---Ccc-hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHh
Q 000200 1007 ---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG-QETIEKNL 1052 (1871)
Q Consensus 1007 ---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G-~~~~~~~~ 1052 (1871)
.+. ...++.-+..+|.+...+|-+++-..+..++...+ .+.+...+
T Consensus 808 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 858 (963)
T 2x19_B 808 FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVV 858 (963)
T ss_dssp GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHT
T ss_pred HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 233 55566667778999999999999999999988765 33343333
No 39
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.20 E-value=0.0021 Score=83.83 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=108.3
Q ss_pred CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 000200 316 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAM 393 (1871)
Q Consensus 316 pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEK-K~~V~eAl~~aLda~ 393 (1871)
+++..|. +..|.+.+.|.|..+...|+.+|+.|+..-.....- ....+++.+++.|++. -+.++.++..+|-.+
T Consensus 9 ~~~~~g~----i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 9 AELATRA----IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp ---CTTT----HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhhhch----HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444454 445555666889999999999999999875422111 1236789999999875 688888888888765
Q ss_pred HHhcC--CCh--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHH
Q 000200 394 HKAGC--LNL--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSV 468 (1871)
Q Consensus 394 ~~~~~--~~l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~ 468 (1871)
..... ..+ ...++.+...|++.++.++..++.-|........... ..+. ...+|.++.+|.+.++.+|.++..+
T Consensus 85 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 85 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp TTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred hcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 43200 000 1356778889999999999999999888876542211 1222 4589999999999999999999988
Q ss_pred HHHHHH
Q 000200 469 LAAIAK 474 (1871)
Q Consensus 469 l~~lmk 474 (1871)
|..+..
T Consensus 164 L~~La~ 169 (644)
T 2z6h_A 164 LQILAY 169 (644)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887764
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.19 E-value=0.011 Score=74.27 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCCC---
Q 000200 326 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 400 (1871)
Q Consensus 326 L~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEK-K~~V~eAl~~aLda~~~~~~~~--- 400 (1871)
.+..|-+.+.+.|..+...|+.++..|+..-...-.- .....++++++.++.. .+.++..+..+|-.+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHH
Confidence 4566666777889999999999999999754311100 1236789999999765 678888877777776431 000
Q ss_pred h--hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 401 L--VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 401 l--~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+ ...++.+...+++.+|.++.+++..|.......+... ..+. ...+|.++..+.+.++.+|..+..+|..+.
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH-HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1356778888999999999999998888776532211 1111 457999999999999999999988887553
No 41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.10 E-value=0.0085 Score=81.80 Aligned_cols=284 Identities=12% Similarity=0.134 Sum_probs=175.3
Q ss_pred hHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhC---
Q 000200 717 FIFERLYKIMKDH--KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--- 791 (1871)
Q Consensus 717 ~V~~~l~~~~~~~--KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G--- 791 (1871)
|+..++++.+... .+|.++..++..+++.-+.|. .-.+..++..+-.+ |.+.|+.||.+|...+..+-....
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcccccc
Confidence 3445666665333 289999999988887766552 12356777777775 999999999999998887654322
Q ss_pred --------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcC
Q 000200 792 --------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 863 (1871)
Q Consensus 792 --------~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~ 863 (1871)
..+.+|+. .+++.|-.-+++... .|.
T Consensus 532 ~~~~~~~~~~l~p~l~----~ll~~L~~ll~~~~~----~~~-------------------------------------- 565 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTE----ILLKNLIALILKHGS----SPE-------------------------------------- 565 (960)
T ss_dssp SCCBSSCGGGTTTTHH----HHHHHHHHHHHTTCC----CHH--------------------------------------
T ss_pred cccccccHHHhhhhHH----HHHHHHHHHHHhccC----CCC--------------------------------------
Confidence 23445553 344444444443210 000
Q ss_pred CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-----chhHhHHHHHHHHHHHHHHhcCh-hHHhhhhhh
Q 000200 864 SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSSKGV 937 (1871)
Q Consensus 864 d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-----DsNk~lv~~al~ii~~lA~amG~-~~~k~~k~l 937 (1871)
+-++.-..++.+..++.....-+.|- +..|+..|..++. .+|+.+...++.+|+.++.+.|+ .+..+...+
T Consensus 566 --~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~ 642 (960)
T 1wa5_C 566 --KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSM 642 (960)
T ss_dssp --HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 00011256788888887666677774 3778777777763 35788888899999999999876 567888899
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhc-cchhhhHHHHHHHhcccC--CcchHHHHHHHHHHHhccCCC-Ccchhhh
Q 000200 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLDKMVPYVTTALTDAKL--GAEGRKDLFDWLSKQLTGLSG-FPDAAHL 1013 (1871)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~-gl~~~~~~i~~~L~~~~~--~p~~r~e~l~wL~~~l~~~~~-~~~~~~~ 1013 (1871)
+|.+...|......++..+.+.+....... ++.+.+..+...|-++.. ++.--..+...|...+..... -.....+
T Consensus 643 ~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 722 (960)
T 1wa5_C 643 MPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPV 722 (960)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHH
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHH
Confidence 999999998777778888888888777664 333333333333321110 011112344444333322111 0001222
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 000200 1014 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1054 (1871)
Q Consensus 1014 ~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~ 1054 (1871)
+.-+-.++.+++.+ ..|..+++.++.++|.+.+.+.+..
T Consensus 723 l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~ 761 (960)
T 1wa5_C 723 LGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQ 761 (960)
T ss_dssp HHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHH
Confidence 22233466777744 7888999999999998876666543
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.08 E-value=5.2e-05 Score=83.44 Aligned_cols=182 Identities=20% Similarity=0.172 Sum_probs=133.3
Q ss_pred CCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 853 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 853 kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
...+.+++.++|++|.+|..|++.+..+-. .+.+..|...|.|.|..+...|+..++.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 346788999999999999999999975431 3567788888899999999999988877632
Q ss_pred hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhh
Q 000200 933 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1012 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~ 1012 (1871)
...++.++..|.|..+.||.+++.+|..+ |-...++.+...|.++ ++..|..+...|.+. . ...
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~ 138 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DER 138 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHH
Confidence 24578899999999999999999999875 4455778888888765 688899888887653 1 123
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhHHHHHHHHHh
Q 000200 1013 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1069 (1871)
Q Consensus 1013 ~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~~~i~~~l~k 1069 (1871)
.+..+...|.|.++.||..|..+|+.+-..-..+.+...+++=.+..+....+.|.+
T Consensus 139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 139 AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 555678889999999999999999877221122233333444344444444444444
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.08 E-value=0.00012 Score=95.38 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=229.7
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccchh
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 683 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~~ 683 (1871)
.++.+.|.+.+=..|.+++..+.-..-...+.....--+++.+. .+|+..=+.+.=.+..++.. ..-.+-
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~------s~~~~~Krl~Yl~~~~~~~~----~~e~~~ 106 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIA------SQKFTDKRIGYLGAMLLLDE----RQDVHL 106 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHH------SSSHHHHHHHHHHHHHHCCC----CHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHc------CCchHHHHHHHHHHHHHhCC----CcHHHH
Confidence 45556777666666777777776443222111111222334433 45555444444444333321 122234
Q ss_pred hhccchhhccccc--hhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHH
Q 000200 684 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 761 (1871)
Q Consensus 684 ~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~ 761 (1871)
++++.+..-+.|. -+|..|-.+|..+....-.+.++..+.+. ..+.||-|+..++..+..+..... .. +..+++
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~-L~~~~~~VRk~A~~al~~l~~~~p-~~--v~~~~~ 182 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL-LKTSNSYLRKKAALCAVHVIRKVP-EL--MEMFLP 182 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHSCCHHHHHHHHHHHHHHHHHCG-GG--GGGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCh-HH--HHHHHH
Confidence 5666666555553 35666655555554332233456666666 478999999999999999987543 22 347788
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcC-C----CCCCCCCccccccccccCC
Q 000200 762 FCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN-P----FEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 762 ~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~-~----~~~~p~p~R~~r~~~~~~~ 836 (1871)
.+..+ |.+.|+.|+.+|+.+|+.+...- +.+...+..+=|.+...|..-...- . ..+-+.|--++.--.--
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~-~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L-- 258 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERS-PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL-- 258 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSH-HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH--
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH--
Confidence 88887 99999999999999999986532 2233344455566666655432210 0 00000000000000000
Q ss_pred CCCCCCCCCCccc--cccCCcHHHHhhc-------CCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhcc
Q 000200 837 VSSGGSDGLPRED--ISGKFTPTLVKSL-------ESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY 905 (1871)
Q Consensus 837 ~~~~~~d~lprvD--Is~kit~~l~~~l-------~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~rl~ 905 (1871)
..+.+.| ...++- +++..+ ...+--+..|+...+ +. +.+.. .......|..-|.
T Consensus 259 ------~~l~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~aV~~ea~~~i---~~-----l~~~~~l~~~a~~~L~~~L~ 323 (618)
T 1w63_A 259 ------RILGRNDDDSSEAMN-DILAQVATNTETSKNVGNAILYETVLTI---MD-----IKSESGLRVLAINILGRFLL 323 (618)
T ss_dssp ------HHHTTTCHHHHHTTH-HHHHHHHHTSCCSSTHHHHHHHHHHHHH---HH-----SCCCHHHHHHHHHHHHHHHT
T ss_pred ------HHhCCCCHHHHHHHH-HHHHHHHhccccccchHHHHHHHHHHHH---Hh-----cCCCHHHHHHHHHHHHHHHh
Confidence 0000000 111111 122221 122334555555444 32 22211 1123456666678
Q ss_pred chhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccC
Q 000200 906 DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 985 (1871)
Q Consensus 906 DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~ 985 (1871)
+++.++.-.||..++.++..-...|.+ ..+.++.+|.|.-..||..++++|...+....++.+++.+.+++.+.
T Consensus 324 ~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~-- 397 (618)
T 1w63_A 324 NNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSC-- 397 (618)
T ss_dssp CSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHC--
T ss_pred CCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhC--
Confidence 888899999999999999764433433 45688999999999999999999999999988999999999999854
Q ss_pred CcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 986 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 986 ~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+++.|.++..+|.+.-.... ++....+.-++..|.+....|+..+-.++-.++.
T Consensus 398 d~e~r~~~v~~I~~la~k~~--~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~ 451 (618)
T 1w63_A 398 EPEFKADCASGIFLAAEKYA--PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLIT 451 (618)
T ss_dssp CHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 57899999999987765543 2333334446666666665566544444444444
No 44
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.04 E-value=0.0057 Score=83.43 Aligned_cols=237 Identities=11% Similarity=0.161 Sum_probs=142.8
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCC------------CCccchhhhccchhhccc----------c-------chhh
Q 000200 649 LPGWSEKNVQVQQQVIEVINYLAATATK------------FPKKCVVLCLLGISERVA----------D-------IKTR 699 (1871)
Q Consensus 649 ~PgwkesNfqV~~~~leil~~la~~~~~------------fs~~~~~~~l~~lveKlg----------D-------~K~r 699 (1871)
.||+...+-.|....++....+++.... .-+..+..+++.++.|+. | .-.|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 5776655666677777766665542100 012233344455555541 1 1356
Q ss_pred hHHHHHHHHHHHhhchHhHHHHHHHhhh---hc-----CChhhHHHHHHHHHHHHHHhccCc-cchHhHHHHHhhhcCC-
Q 000200 700 AHAMKCLTTFSEAVGPGFIFERLYKIMK---DH-----KNPKVLSEGILWMVSAVEDFGVSH-LKLKDLIDFCKDTGLQ- 769 (1871)
Q Consensus 700 ~~a~e~L~~~aE~~~~~~V~~~l~~~~~---~~-----KnPKv~~e~l~wl~~ai~eFG~~~-~~~K~li~~~k~~~l~- 769 (1871)
..+.++|..++...+ +.++..++..+. .+ .+++.+..++-.+..+.+...-.. -.+..++..+.. |.
T Consensus 439 ~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~--l~~ 515 (971)
T 2x1g_F 439 QDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAE--IPY 515 (971)
T ss_dssp HHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHH--SCT
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHh--cCc
Confidence 788899999998776 444444443321 22 688888888877777654333211 123456665554 44
Q ss_pred -CccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcc
Q 000200 770 -SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRE 848 (1871)
Q Consensus 770 -~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprv 848 (1871)
+.+|.||..|+.++|.+..|+++.- .|+..+=|.++..++
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~-------------------------------------- 556 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGLN-------------------------------------- 556 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHHH--------------------------------------
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhC--------------------------------------
Confidence 3599999999999999999887532 344333333333331
Q ss_pred ccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc--hhHhHHHHHHHHHHHHHHhc
Q 000200 849 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAM 926 (1871)
Q Consensus 849 DIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D--sNk~lv~~al~ii~~lA~am 926 (1871)
.+++..|-.++..++++....|.|-. .+|+..|-.-+.. ........++.+++.++.++
T Consensus 557 ------------------~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 557 ------------------SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ------------------SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 22355566666677765545555553 6677766665543 33567778889999999988
Q ss_pred C-hhHHhhhhhhhHHHHHHhc
Q 000200 927 G-PAVEKSSKGVLSDILKCLG 946 (1871)
Q Consensus 927 G-~~~~k~~k~l~~~il~~l~ 946 (1871)
+ ..+.+|...++++++..+.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~ 638 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQ 638 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 7 5677888888888887665
No 45
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.02 E-value=0.1 Score=71.13 Aligned_cols=283 Identities=9% Similarity=0.048 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCccchhhhccchhhccccc--hhhhHHHHHHHHHHHhhc-------------h----H
Q 000200 656 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG-------------P----G 716 (1871)
Q Consensus 656 NfqV~~~~leil~~la~~~~~fs~~~~~~~l~~lveKlgD~--K~r~~a~e~L~~~aE~~~-------------~----~ 716 (1871)
+..|....+.++..+++. +.+.....+++.++..+.|. .++..|..+|..|+|... . .
T Consensus 471 ~p~vr~~a~~~lg~~~~~---~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQ---LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGG---SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 888888888888877663 34455666778888877774 478999999999998421 1 2
Q ss_pred hHHHHHHHhhhhcCC---hh--hHHHHHHHHHHHHHHhccCccc-hHhHHHHH----hhhcCCCccHHHHHHHHHHHHHH
Q 000200 717 FIFERLYKIMKDHKN---PK--VLSEGILWMVSAVEDFGVSHLK-LKDLIDFC----KDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 717 ~V~~~l~~~~~~~Kn---PK--v~~e~l~wl~~ai~eFG~~~~~-~K~li~~~----k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
-+++.++..+ +.-+ ++ .....+..|..++..++-...+ ...++..+ ...+=...|+..+...+.+++.+
T Consensus 548 ~ll~~L~~ll-~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 548 ILLKNLIALI-LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHH-HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3344444433 2211 33 3445666677777766644333 23344333 33211346889998899999999
Q ss_pred HhhhCchh-HhhhhcchHHHHHHHHHHHhcCCCCCCCCCc---cccccccccCCCCCCCCCCCCccccccCCcHHHH--h
Q 000200 787 HKFVGPDI-KGFLADVKPALLSALDAEYEKNPFEGTVVPK---KTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--K 860 (1871)
Q Consensus 787 y~~~G~~l-~~~l~dlkpall~~ie~EF~K~~~~~~p~p~---R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~--~ 860 (1871)
-+..|+.. ..+.+.+=|.+...++..-... -+..-. .-++.. +.++. ...++-+-++ +
T Consensus 627 ~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~---~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~ 690 (960)
T 1wa5_C 627 LNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF---IPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPN 690 (960)
T ss_dssp HHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT---HHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGG
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHHhhhHhh---HHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHH
Confidence 99877653 3444555566555554210000 000000 000000 00110 0011111111 1
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChh-HHhhhhhhhH
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLS 939 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~-~~k~~k~l~~ 939 (1871)
-++...|= -..+..+..++......|-. ...++..+.+.+.+.+ .-..++.+++.++..+|.. |.+|...+++
T Consensus 691 ~~~~~~~~--~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 691 VWELKGNI--PAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp GGCCTTTH--HHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HhcCCCCc--hhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 11122221 23445555555432222222 1345555555554433 2378999999999999999 9999999999
Q ss_pred HHHHHhccCc-hhHHHHHHHHHHHHH
Q 000200 940 DILKCLGDNK-KHMRECTLTVLDAWL 964 (1871)
Q Consensus 940 ~il~~l~D~K-~~vR~aa~~alda~~ 964 (1871)
.++..|...| ..+|.+.+..+...+
T Consensus 765 ~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 765 LLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 9999997765 445544444444443
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.01 E-value=0.00021 Score=82.69 Aligned_cols=229 Identities=15% Similarity=0.083 Sum_probs=127.6
Q ss_pred ccchhhcccc--chhhhHHHHHHHHHHHhhchHhHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHH
Q 000200 686 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 763 (1871)
Q Consensus 686 l~~lveKlgD--~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~ 763 (1871)
++.++.-+.| ..+|..|..+|..+. ..-++..+...+ ++.+|.++..++..|. .+|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~----~l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILG----QIKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHH----HSCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHH----HhccccccchHHHHHH
Confidence 3444555554 456767666666554 234566676664 6889999988886554 4554333355677777
Q ss_pred hhhcCCCccHHHHHHHHHHHHHHHhhhC-------chhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000200 764 KDTGLQSSAAATRNATIKLLGALHKFVG-------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 836 (1871)
Q Consensus 764 k~~~l~~sN~~VR~aAi~Ll~~ly~~~G-------~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~ 836 (1871)
...++.+.|+.||..|+..|+.+....+ +.|...+.|-.+......=.-+.+..
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------------------- 156 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------------------- 156 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------------------
Confidence 6423789999999999999998764321 11111122221111111111111110
Q ss_pred CCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHH
Q 000200 837 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 916 (1871)
Q Consensus 837 ~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al 916 (1871)
+ ...-+.|+.-+.|++|.+|..|+..+..+- ... .+.+..|...+.|.|..+...|+
T Consensus 157 -----~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~-~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 157 -----D---------KATIPLLINLLKDPNGDVRNWAAFAININK--------YDN-SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp ----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT--------CCC-HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred -----C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--------cCc-HHHHHHHHHHhcCCCHHHHHHHH
Confidence 0 012344566666777777777777665441 111 45566666666677766666666
Q ss_pred HHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 917 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
..++.+. ....++.++..|.|.. ||.++..+|..+ |-...++.+.+.|.
T Consensus 214 ~aL~~~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i----~~~~~~~~L~~~l~ 262 (280)
T 1oyz_A 214 IGLSYRK----------DKRVLSVLCDELKKNT--VYDDIIEAAGEL----GDKTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHTT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH----CCGGGHHHHHHHHT
T ss_pred HHHHHhC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc----CchhhhHHHHHHHh
Confidence 6666553 1235566666666643 666666666554 33455565555555
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.027 Score=73.31 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHhc-cCC---HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 364 SRFLLPVLLEKLK-EKK---PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 364 ~~~~~~~lLeklK-EKK---~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
+..-+..+=..|+ +++ ..-++++...+-.+.. | .......-++...+.++++..|.-...++..++...+ .
T Consensus 33 i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~-G-~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e- 107 (621)
T 2vgl_A 33 INKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL-G-HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--E- 107 (621)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHH-S-CCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--H-
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc-C-CCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--H-
Confidence 4444445555555 322 2244566665555443 3 3455566778889999999999988888887776442 1
Q ss_pred HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 440 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 440 ~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
++--++..+.+-++|+++-+|-.|..+|+.+
T Consensus 108 --~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i 138 (621)
T 2vgl_A 108 --LIRLINNAIKNDLASRNPTFMGLALHCIANV 138 (621)
T ss_dssp --HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Confidence 1234577888999999999999999888876
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.80 E-value=0.015 Score=72.99 Aligned_cols=182 Identities=11% Similarity=0.014 Sum_probs=119.2
Q ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-h
Q 000200 857 TLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S 934 (1871)
Q Consensus 857 ~l~~~l~-d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~ 934 (1871)
.++.-+. +.+|.+|..|+..+..+......+-.-.. ...+..|-..|.+.+..++..|+.++..++..-...-... .
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3555553 34899999999999887532111100000 2356677788888899999999999999998754332222 2
Q ss_pred hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhc-------cchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC
Q 000200 935 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1007 (1871)
Q Consensus 935 k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~-------gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~ 1007 (1871)
...+|.++..|.+....+|..+..+|..|.... .-...++.+...|.+. +++.+.+....+...|...+..
T Consensus 142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSTTH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--ChHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999999998776421 1112355666667654 3444554444444455543321
Q ss_pred cc-h--hhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1008 PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1008 ~~-~--~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.. . ...+.+++..|.|.+.++|..+-.+|..+..
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 11 1 2356678888999999999998887776654
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.78 E-value=0.00087 Score=85.03 Aligned_cols=371 Identities=12% Similarity=0.131 Sum_probs=217.5
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccch-----hHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~--~~~~~-----~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
++++++|.|.|-..+++|...+.+.+... ++.+. ....||++|. .+.|..++....-+|..++...+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 67889999999999999999998877442 11111 1234555553 345778888888888888753211
Q ss_pred CCccch-hhhccchhhcccc--chhhhHHHHHHHHHHHhh--chHhH-----HHHHHHhhhhcCC----hhhHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV--GPGFI-----FERLYKIMKDHKN----PKVLSEGILWM 742 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlgD--~K~r~~a~e~L~~~aE~~--~~~~V-----~~~l~~~~~~~Kn----PKv~~e~l~wl 742 (1871)
..+..+ .-.++.++.-+.+ ..+++.|..+|..++.-. .-..| +..++..+..... ..++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 111111 1245666665554 578899888888887421 11222 2334444322211 12222222222
Q ss_pred HHHHHHhccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCC
Q 000200 743 VSAVEDFGVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 819 (1871)
Q Consensus 743 ~~ai~eFG~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~ 819 (1871)
.... ..... ...+..++..+..+ |.+.++.||..|...|..+-. ++ +.....+ ..
T Consensus 215 ~nl~-~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~--~~----------~~~~~~i----~~---- 272 (510)
T 3ul1_B 215 SNLC-RNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GP----------NERIEMV----VK---- 272 (510)
T ss_dssp HHHH-CCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS--SC----------HHHHHHH----HT----
T ss_pred HHHh-hcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhh--ch----------hhhHHHH----Hh----
Confidence 2222 21111 12346788888888 999999999999887765432 11 1110000 00
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcc----cCCCCCCccc
Q 000200 820 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEAN----KRIQPAGTGE 895 (1871)
Q Consensus 820 ~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~an----krI~p~~~ge 895 (1871)
..+-+.|+.-+.+.++.+|..++..+..|+.... ..+.. .
T Consensus 273 --------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~----g 316 (510)
T 3ul1_B 273 --------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA----G 316 (510)
T ss_dssp --------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT----T
T ss_pred --------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhc----c
Confidence 0123457777889999999999999998874210 01111 2
Q ss_pred hHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch----
Q 000200 896 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD---- 970 (1871)
Q Consensus 896 L~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~---- 970 (1871)
.+..|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 4556667778899999999999999997543221111 13468899999999999999999999987766543322
Q ss_pred ----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC---CCCcchhhh------hhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 971 ----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 971 ----~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~---~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
.+++.+...|.++ ++..+..++.-|..-+... .....+..+ +.-+-....+.|.+|++.|..+|.
T Consensus 397 L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 474 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474 (510)
T ss_dssp HHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2344555556543 4666766666555433211 111111111 112333446778888887777765
Q ss_pred HH
Q 000200 1038 EI 1039 (1871)
Q Consensus 1038 ~~ 1039 (1871)
.+
T Consensus 475 ~y 476 (510)
T 3ul1_B 475 KY 476 (510)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.76 E-value=0.00057 Score=79.09 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=122.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHhccccccchhhh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 367 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk-~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~ 367 (1871)
.+...+.+..|..|..|+..|..+... +....+++..|.. .+.|.|..|...|+.+++.++.+.. .+...+
T Consensus 58 ~L~~~l~d~~~~vR~~A~~aL~~l~~~----~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~ 129 (280)
T 1oyz_A 58 LAIEFCSDKNYIRRDIGAFILGQIKIC----KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 129 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHSCCC----TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHH
Confidence 466677888999999999888766432 2235567777775 4569999999999999999886542 345677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhH
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 447 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~ 447 (1871)
++.++..++|..+.||.++..+|-.+. -.+.++.+...+++.+|.||..++.-|.+. .... ...+
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~~~--------~~~~ 194 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIN------DKATIPLLINLLKDPNGDVRNWAAFAININ-KYDN--------SDIR 194 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-TCCC--------HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh-ccCc--------HHHH
Confidence 899999999999999987777765442 234678888899999999998888777653 2111 2456
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 448 PICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 448 ~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+.+...++|.++.||..|..+|+.+-
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88889999999999999999988753
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.74 E-value=0.0029 Score=80.59 Aligned_cols=375 Identities=11% Similarity=0.142 Sum_probs=221.7
Q ss_pred HhHHHhhhhccHHHHHHHHHHHHHHHHhh--hccc-----hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCC
Q 000200 604 ADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 676 (1871)
Q Consensus 604 ~~i~~~L~s~~WK~RL~a~e~l~~~v~~~--~~~~-----~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~ 676 (1871)
++++.++.+.|-..+++|+..+.+.+... ++.+ .....||++|. .+.|..++.....+|..++...+.
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 57789999999999999999998776442 1111 11234566653 356788888888888888753211
Q ss_pred CCccch-hhhccchhhccc--cchhhhHHHHHHHHHHHh--hchHhH-----HHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 000200 677 FPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEA--VGPGFI-----FERLYKIMKDHKNPKVLSEGILWMVSAV 746 (1871)
Q Consensus 677 fs~~~~-~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~--~~~~~V-----~~~l~~~~~~~KnPKv~~e~l~wl~~ai 746 (1871)
..+..+ .-+++.++.-+. +..++..|..+|..++.. ..-..| +..++..+............+...+.++
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 124555555444 356888888888888742 112222 2234444322222222222222222233
Q ss_pred HHh---ccC---ccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCC
Q 000200 747 EDF---GVS---HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 820 (1871)
Q Consensus 747 ~eF---G~~---~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~ 820 (1871)
..+ ... ...+..++..+-.+ |.+.++.|+..|...|..+-. ++. .....+- .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~--~~~----------~~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTD--GPN----------ERIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHS--SCH----------HHHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhh--hhh----------hhHHHHH----h-----
Confidence 222 111 12346788888888 999999999998877754432 111 1100000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC-ccchHHH
Q 000200 821 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 899 (1871)
Q Consensus 821 ~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~-~geL~~a 899 (1871)
..+-+.|+.-+.+.++.++..++..+..|+... ...+... -...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788999999999999999887421 1100000 0224566
Q ss_pred HhhhccchhHhHHHHHHHHHHHHHHhcChhHHh-hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccch--------
Q 000200 900 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEK-SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 970 (1871)
Q Consensus 900 Lk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k-~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~-------- 970 (1871)
|..-|.+.+..+...|+.+++.|+.+-...... .-..++|.++..|.+....+|..|..||..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 777788889999999999999998643222221 13468999999999999999999999887776543322
Q ss_pred hhhHHHHHHHhcccCCcchHHHHHHHHHHHhcc---CCCCcchhhh------hhHHhhhcCCCCHHHHHHHHHHHHHH
Q 000200 971 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1039 (1871)
Q Consensus 971 ~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~---~~~~~~~~~~------~~p~~~~L~Dr~~dVRkaA~~~L~~~ 1039 (1871)
.+++.+.+.|.++ ++..+.-+|.-|..-|.. ......+..+ +.-+-....+.|.+|++.|..+|...
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2344556666643 566777777666544421 1111111111 22233345688899999888887654
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.72 E-value=0.00019 Score=79.04 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=135.4
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~ 365 (1871)
-+..-+.+..|..|.+|+..|..+... +..... --...+..|-..+.+.|..+...|+.+++.|+.+-...-.. ...
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 467778999999999999999988742 211100 00136778888899889999999999999998643211111 124
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
..+|.++.-+++..+.|+..+..+|-.+... ... . ..+++.+...|++.++.++..++..|.......+. ..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QK 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-HH
Confidence 5899999999999999999999998888642 100 1 13567788899999999999999888887764322 21
Q ss_pred HHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 440 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 440 ~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
..+. ...++.++.++.+.+++||+.|..+|..|.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2222 347899999999999999999999998763
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.69 E-value=0.0012 Score=88.81 Aligned_cols=272 Identities=11% Similarity=0.201 Sum_probs=193.3
Q ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHH-HhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCc--hhH
Q 000200 719 FERLYKIMKDHKNPKVLSEGILWMVSAVE-DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP--DIK 795 (1871)
Q Consensus 719 ~~~l~~~~~~~KnPKv~~e~l~wl~~ai~-eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~--~l~ 795 (1871)
++.+++.+...+ +--+.++..-++..+. +-+...+. -.+++.+++. +.+-+.+ .+|..+++.|....|. .+.
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~k~~~--~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 16 LEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKG-IKDKKTA--ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHH-HTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHH-HhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 334444444334 2223444445555555 33444455 3688888887 8887777 8888888888765543 333
Q ss_pred hhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHH
Q 000200 796 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 875 (1871)
Q Consensus 796 ~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe 875 (1871)
.||= + +-+.+++.++||+=.+|..|-.
T Consensus 91 ~~~~----------------------------------------------------~-~~~~~~~~~~dk~~~v~~aa~~ 117 (986)
T 2iw3_A 91 PYIV----------------------------------------------------Q-LVPAICTNAGNKDKEIQSVASE 117 (986)
T ss_dssp HHHH----------------------------------------------------T-THHHHHHHTTCSSHHHHHHHHH
T ss_pred cchH----------------------------------------------------H-HHHHHHHHhcCCchHHHHHHHH
Confidence 3331 1 2345788889999999999999
Q ss_pred HHHHHHHHcccCCCCCCccchHHHHhhhccchhH-hHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHH
Q 000200 876 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 954 (1871)
Q Consensus 876 ~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk-~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~ 954 (1871)
++.+|+.. +.|.-+--++++|-.-|..++| ....-||++++.++.....-+..+..-++|-+-++.-|-|+-|..
T Consensus 118 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~ 193 (986)
T 2iw3_A 118 TLISIVNA----VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193 (986)
T ss_dssp HHHHHHHH----SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHh----CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHH
Confidence 99999963 4454445677788888877765 678889999999998776667788889999999999999999999
Q ss_pred HHHHHHHHHHHhcc---chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCC----cchhhhhhHHhh-hcCCCCH
Q 000200 955 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASI-AMTDKSS 1026 (1871)
Q Consensus 955 aa~~alda~~~~~g---l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~----~~~~~~~~p~~~-~L~Dr~~ 1026 (1871)
+|..||.+.+..++ ++.++|.+.+++.+|.. =.|... .|....-. .....++.|++. +|.+|..
T Consensus 194 ~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~----~~~~~~----~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~ 265 (986)
T 2iw3_A 194 AATAAMTKATETVDNKDIERFIPSLIQCIADPTE----VPETVH----LLGATTFVAEVTPATLSIMVPLLSRGLNERET 265 (986)
T ss_dssp HHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH----HHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh----hHHHHH----HhhcCeeEeeecchhHHHHHHHHHhhhccCcc
Confidence 99999999999886 56778888999987642 222222 33333211 224667888554 9999999
Q ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHhhccCchhH
Q 000200 1027 DVRKAAEACIVEILRAG-GQETIEKNLKDIQGPAL 1060 (1871)
Q Consensus 1027 dVRkaA~~~L~~~m~~~-G~~~~~~~~~~Lk~~~~ 1060 (1871)
.+...+.-++.-+.+.| .+..+..++.+|.|..+
T Consensus 266 ~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 266 GIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred hhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 99999988888888888 45566777777765543
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.69 E-value=0.0053 Score=79.96 Aligned_cols=396 Identities=14% Similarity=0.089 Sum_probs=206.8
Q ss_pred hhcCCCccccc--CcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhh
Q 000200 10 EAKKLPWEDRL--LHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADA 87 (1871)
Q Consensus 10 ~~~~lpl~erl--~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~ 87 (1871)
+.---++..-| .|.++-.|..|.-.+.+.|+.. +..-....+.+.+.+.+.|+|..++..++-++..........+
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 44556777788 9999999999999999999742 1110001355667788999999999999998887766542211
Q ss_pred hhhhhHHHHHHHHhhhcC--------------ChhhHHHHHHHHHHHHhhcchh---h---HHHHHHH---------Hhh
Q 000200 88 GRYAKEVCDAIAAKCLTG--------------RPKTVEKAQAVFMLWVELEAVD---V---FLDVMEK---------AIK 138 (1871)
Q Consensus 88 ~~~~~~~~~~lveK~L~~--------------r~~tk~~a~e~~l~~vE~e~~~---~---v~e~ll~---------~~~ 138 (1871)
.......+. +..+.+.. -+=.+-+.++++..|...+.++ . +++.++. .+.
T Consensus 223 ~~~~~~~~~-~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 223 KTSVSLAVS-RLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp TTHHHHHHH-HHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHH-HHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 111111111 11122211 1223333444444444322221 2 2222332 234
Q ss_pred ccCc--hhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhhhchHHH
Q 000200 139 NKVA--KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 216 (1871)
Q Consensus 139 ~K~P--Kvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~~Lkp~q 216 (1871)
|+|+ =|+-+|+.++..+ +..---.+..+..|-+++.++|+++|=-|..-+..+-.--+ + . ..+ ....+.
T Consensus 302 ~~n~~~aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~-~~~-~~~~~~- 372 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHH----DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-H-EAV-KTHIET- 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-H-HHH-HTTHHH-
T ss_pred ccchHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-H-HHH-HHHHHH-
Confidence 5665 7777887777553 32100134466777788888899999887766665532211 1 0 111 111111
Q ss_pred HHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcc---cccCCCCchhhhhh
Q 000200 217 KKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPV---DILTPLEKSGFWEG 293 (1871)
Q Consensus 217 ~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~v---dIl~klpk~~f~~~ 293 (1871)
-|.-+... +-+.+|...-.- -|.++++. .|+. .+.+-
T Consensus 373 ------i~~~L~~d--~d~~Ir~~aL~l---------------------------L~~l~~~~Nv~~Iv~-----eL~~y 412 (621)
T 2vgl_A 373 ------VINALKTE--RDVSVRQRAVDL---------------------------LYAMCDRSNAQQIVA-----EMLSY 412 (621)
T ss_dssp ------HHHHHTTC--CCHHHHHHHHHH---------------------------HHHHCCHHHHHHHHH-----HHHHH
T ss_pred ------HHHHhccC--CCHhHHHHHHHH---------------------------HHHHcChhhHHHHHH-----HHHHH
Confidence 11111100 112333221100 01111111 1222 33344
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLe 373 (1871)
+.+..-.-|.+++..+..++. |+ +.++.-.+..|-+++.+.+-.++...+..+-.+... .+.+..|+ +..+++
T Consensus 413 l~~~d~~~~~~~v~~I~~la~--k~-~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~~---~~~l~~ 485 (621)
T 2vgl_A 413 LETADYSIREEIVLKVAILAE--KY-AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGYA---AKTVFE 485 (621)
T ss_dssp HHHCCHHHHHHHHHHHHHHHH--HH-CSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHHH---HHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHH--hc-CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHHH---HHHHHH
Confidence 444555567777776665542 11 245667777777777755545555555555555432 13344442 444566
Q ss_pred HhccCC--HHHHHHHHHHHHHHHHhcC-------CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 374 KLKEKK--PTVAESLTQTLQAMHKAGC-------LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 374 klKEKK--~~V~eAl~~aLda~~~~~~-------~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
-+.|-. ..++ ..|+=-+.+|+. .+..++++.+...+..-++.+|.+++.-+.+.+...+. . ..
T Consensus 486 ~l~~~~~~~~li---~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~---~~ 557 (621)
T 2vgl_A 486 ALQAPACHENLV---KVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V---KA 557 (621)
T ss_dssp HHTSSSCCHHHH---HHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G---HH
T ss_pred HHcCccchHHHH---HHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H---HH
Confidence 666543 2222 122223333310 11235566676777788899999999999988765432 1 12
Q ss_pred hhHHHHHhhhC--CCCHHHHHHHHHHHHHH
Q 000200 445 DYVPICMECLN--DGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 445 ~~~~~l~k~l~--Ds~~~VR~aA~~~l~~l 472 (1871)
.+...+-.+.+ |.++|||+.|++.+.-+
T Consensus 558 ~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 558 TIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23344444555 99999999999865544
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.63 E-value=0.00043 Score=78.40 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=135.4
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-ch
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SS 364 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~ 364 (1871)
+.|.+.|.+.....|.+|+..|..+++. +....---...+..|-+.+.+.+..+...|+.+|+.|+.+-...-.. ..
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4689999999999999999999765532 10000000136778888999888999999999999999753221111 12
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
...+|.++.-+++..+.|++.+..+|-.+... .... ..++.+...|++.++.++..++.-|....... ..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 35899999999999999999999998887643 1111 35678888999999999998888777665433 22
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
....+. ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 222222 458999999999999999999999999886
No 56
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.59 E-value=0.017 Score=75.28 Aligned_cols=383 Identities=13% Similarity=0.032 Sum_probs=203.8
Q ss_pred cccccCcCchhHHHHHHHHHHHHhhhcCCCCchhhh--hhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcChhhhhh-hh
Q 000200 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR--ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY-AK 92 (1871)
Q Consensus 16 l~erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~--~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~~~~~~~-~~ 92 (1871)
|-+-|.+.+...|..|..-|....... ++....+. ...+.+-+.+.+.|...+..++.+|..+....+...... ..
T Consensus 103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 345577888999999999998887532 11111111 122344466788899888888888866553221110111 12
Q ss_pred HHHHHHHHhhhcC-ChhhHHHHHHHHHHHHhhcc-h-----hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCCccC
Q 000200 93 EVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEA-V-----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP 165 (1871)
Q Consensus 93 ~~~~~lveK~L~~-r~~tk~~a~e~~l~~vE~e~-~-----~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~vv~ 165 (1871)
+.++.|+.-.-++ ....+..+..++..+..... . ..++..|...+.+.++.++..++.+|..+... +.....
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~ 260 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA-ATKQEG 260 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG-CTTCCS
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-chhhhh
Confidence 3455555532222 23334444444433332211 0 24667788888888999999999888887544 333445
Q ss_pred hhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHHHhh-hchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHh
Q 000200 166 PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFE-KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 244 (1871)
Q Consensus 166 ~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~L~~-~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~ 244 (1871)
.+.++..|-.++.+.|..||..+...+..|... ....+..+.+ +.=+..++-|...
T Consensus 261 ~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~--------------------- 317 (644)
T 2z6h_A 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRA--------------------- 317 (644)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH---------------------
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHcc---------------------
Confidence 678889999999999999999999888877542 1111122211 0111111111100
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhc-CC---CCC
Q 000200 245 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KR---IAP 320 (1871)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~-pK---i~~ 320 (1871)
+.+|..|..++..|..|... +- ...
T Consensus 318 ---------------------------------------------------~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 318 ---------------------------------------------------GDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 00122222222222222110 00 000
Q ss_pred -CChHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccC--------------------
Q 000200 321 -GDFTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-------------------- 378 (1871)
Q Consensus 321 -~dy~eL~~~Lkk~l~Ds-Nv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEK-------------------- 378 (1871)
---...+..|.++|.+. +..++..|+.+++.|+.+-.....=.-..++|.+++-+++.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~ 426 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence 00001233333333322 23444444444444443211100000123344444444432
Q ss_pred --CHHHHHHHHHHHHHHHHhc----CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh--hhhHHHH
Q 000200 379 --KPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH--KDYVPIC 450 (1871)
Q Consensus 379 --K~~V~eAl~~aLda~~~~~----~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~--k~~~~~l 450 (1871)
-..|++++..||-.++... .+.-..+++.+...|.+.++.++..+...|..+... +. ....+ ...++.+
T Consensus 427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L 503 (644)
T 2z6h_A 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPL 503 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHH
Confidence 2456667777776554320 000113567788899999999999988888876542 11 11112 2367899
Q ss_pred HhhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 451 MECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 451 ~k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
..++.+.+++||.+|..+|+.+...-+
T Consensus 504 ~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 504 TELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 999999999999999999998765554
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.57 E-value=0.03 Score=71.17 Aligned_cols=373 Identities=14% Similarity=0.156 Sum_probs=220.0
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCC---hHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccccc-c
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSG-S 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d---y~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~-y 363 (1871)
++.+.+.|..=..+.+|+..+.++++..+-.+-+ =..++..|-.++. +.|..+...|+.||+.||.+-...-.. .
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6888999999999999999999987643322210 0135667777886 778999999999999999874322111 1
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhh------hHHHHHHHhhcCCc-hhHHHHHHHHHHHHh---h
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKVP-LVRSLTLNWVTFCIE---T 433 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~------~~e~i~~al~~KnP-~vk~etl~~L~r~l~---~ 433 (1871)
-...+|.++.-++.....|++.+..||-.++.. +....+ .++.+...+..... ......+.....++. .
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 235789999999999999999999999888753 111111 24556666665442 222233323333332 2
Q ss_pred CC-hhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCC
Q 000200 434 SS-KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 512 (1871)
Q Consensus 434 ~~-~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~ 512 (1871)
.. ..........++|.+++++.+.+++|+..|+.+|..+... ++.. +...+.. +
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~-------------~~~~---~~~v~~~-g-------- 293 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-------------PNER---IEMVVKK-G-------- 293 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-------------CHHH---HHHHHTT-T--------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh-------------hhhh---HHHHHhc-c--------
Confidence 11 1111123467899999999999999999999888765531 1111 1111110 0
Q ss_pred CccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHH
Q 000200 513 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 592 (1871)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~e 592 (1871)
T Consensus 294 -------------------------------------------------------------------------------- 293 (529)
T 3tpo_A 294 -------------------------------------------------------------------------------- 293 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhcCCCccchHHHHHHHHHH
Q 000200 593 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEV 666 (1871)
Q Consensus 593 e~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~------~~~~~~lvr~l~~~PgwkesNfqV~~~~lei 666 (1871)
+-+-++..|.+.++..+..++..+...+...+.. ......|+.++ .+.+-.|.....-+
T Consensus 294 ---------~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 294 ---------VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL------TNPKTNIQKEATWT 358 (529)
T ss_dssp ---------CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT------TCSSHHHHHHHHHH
T ss_pred ---------chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH------cCCCHHHHHHHHHH
Confidence 0011233344445555555554444332211100 01234455544 34456677777777
Q ss_pred HHHHHHhcCCCCccc-hhhhccchhhcc--ccchhhhHHHHHHHHHHHhhchHhH--------HHHHHHhhhhcCChhhH
Q 000200 667 INYLAATATKFPKKC-VVLCLLGISERV--ADIKTRAHAMKCLTTFSEAVGPGFI--------FERLYKIMKDHKNPKVL 735 (1871)
Q Consensus 667 l~~la~~~~~fs~~~-~~~~l~~lveKl--gD~K~r~~a~e~L~~~aE~~~~~~V--------~~~l~~~~~~~KnPKv~ 735 (1871)
|..++.......... -.-+++.++.-+ ++.+++..|.-+|..++....++.+ +..++.. ...++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L-L~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL-LSAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG-GGCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH-hcCCCHHHH
Confidence 777664211100000 012444444433 4567888888888888876555432 3344544 478999999
Q ss_pred HHHHHHHHHHHHHhccCccc---hHh------HHHHHhhhcCCCccHHHHHHHHHHHHH
Q 000200 736 SEGILWMVSAVEDFGVSHLK---LKD------LIDFCKDTGLQSSAAATRNATIKLLGA 785 (1871)
Q Consensus 736 ~e~l~wl~~ai~eFG~~~~~---~K~------li~~~k~~~l~~sN~~VR~aAi~Ll~~ 785 (1871)
.-+|..|..+++-.. ..-. +.. .++.+..+ ..|.|..|+..|..++-.
T Consensus 438 ~~~L~aL~nil~~~~-~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 438 QVILDAISNIFQAAE-KLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-hccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 999888888775321 1111 111 24456666 789999999999888643
No 58
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.53 E-value=0.25 Score=65.75 Aligned_cols=598 Identities=14% Similarity=0.114 Sum_probs=340.9
Q ss_pred HHHHHHHHHHhhh----cCCCCCCChHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhccccccchh-hhHHHHHHHh
Q 000200 302 RKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLLEKL 375 (1871)
Q Consensus 302 RkEaLe~l~~l~~----~pKi~~~dy~eL~~~Lkk~l~D-sNv~vv~~A~~~i~~lA~gLr~~F~~y~~-~~~~~lLekl 375 (1871)
|.-|+..|..|.. .-+|...+ -+..|.+++.. .|--++..|++++.+|++|=+..-..-.+ .=.|-++.-+
T Consensus 25 ~~~a~~nl~vl~re~aga~~i~~~~---~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 101 (810)
T 3now_A 25 RRAAANNLVVLAKEQTGAELLYKDH---CIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVL 101 (810)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTT---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHhhceeeeccccchHHHHhCc---hHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHH
Confidence 4457777777653 22333222 25677777775 88999999999999999986543322211 2245566666
Q ss_pred ccCCHHHHHHHHHHHHHHHHhc--CC-----------------ChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHHhhC
Q 000200 376 KEKKPTVAESLTQTLQAMHKAG--CL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETS 434 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~--~~-----------------~l~~~~e~i~~al~~Kn--P~vk~etl~~L~r~l~~~ 434 (1871)
.-+...+..|+.-++..++... .. .++.++..+...+.+++ ...|-.++..|.|.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 181 (810)
T 3now_A 102 DQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYT 181 (810)
T ss_dssp HCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCcc
Confidence 6677778888888888887751 11 13345555666777776 799999999999999654
Q ss_pred ChhHHHH-----hhhhhHHHHHhhhCCC--------CHHHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHHh
Q 000200 435 SKAAVLK-----VHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 435 ~~~~~~~-----~~k~~~~~l~k~l~Ds--------~~~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
....... =++.++... ..+.+. .++.|-.+.-|+..+..-++.+.- .+.-.+.+.+++.
T Consensus 182 ~~~~~~~~~~~~g~~~~l~v~-~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~ 253 (810)
T 3now_A 182 ALEWAERLVEIRGLCRLLDVC-SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEA-------KARFTDQIDEYIK 253 (810)
T ss_dssp TTTHHHHHHHTTHHHHHHHHH-TCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHHHH
T ss_pred ccccccchhhHhhHHHHHHHH-hcCccccccccCCCChhHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHH
Confidence 2111110 112222221 222333 678999999999999888884321 1111223333332
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 000200 502 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAP 581 (1871)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~ 581 (1871)
.-- . + .....-. .+.+....-- ++
T Consensus 254 ~~~------------~--------~-~~~~~~~--~a~~alt~i~---------------~g------------------ 277 (810)
T 3now_A 254 DKL------------L--------A-PDMESKV--RVTVAITALL---------------NG------------------ 277 (810)
T ss_dssp HHH------------S--------S-CCHHHHH--HHHHHHHHHH---------------SS------------------
T ss_pred HHh------------c--------c-CChHhHH--HHHHHHHHHh---------------cC------------------
Confidence 100 0 0 0000000 0000000000 00
Q ss_pred CCCCCCCCCHHHHHHHH-hccCcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHhcCCCccch
Q 000200 582 EDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKN 656 (1871)
Q Consensus 582 ~~~~~~~~s~ee~e~~~-~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~----~~~~~lvr~l~~~PgwkesN 656 (1871)
.+|..-... .+=+=+.++..+.|.+=..+..|++.+...-.....-+ ...+.|+.+ ++++|
T Consensus 278 --------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L------l~s~~ 343 (810)
T 3now_A 278 --------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL------YHSKN 343 (810)
T ss_dssp --------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH------TTCSC
T ss_pred --------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH------HcCCC
Confidence 011111111 11111556788888888888899988876543321111 112333333 34455
Q ss_pred HHHHHHHHHHHHHHHHhc------CCCCccchhhhccchhhccc----cchhhhHHHHHHHHHHHhh--chHh-----HH
Q 000200 657 VQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVA----DIKTRAHAMKCLTTFSEAV--GPGF-----IF 719 (1871)
Q Consensus 657 fqV~~~~leil~~la~~~------~~fs~~~~~~~l~~lveKlg----D~K~r~~a~e~L~~~aE~~--~~~~-----V~ 719 (1871)
-.+....+-.|..++... ..|....+..+++.++.-+. |.-.+..+.++|.-++... .-++ ++
T Consensus 344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~I 423 (810)
T 3now_A 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASI 423 (810)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchH
Confidence 555556666777776321 12433333333444444333 4457888888887776421 1222 33
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHHHHhc---------------cCccc----------h----H-----hHHHHHhh
Q 000200 720 ERLYKIMKDHKNPKVLSEGILWMVSAVEDFG---------------VSHLK----------L----K-----DLIDFCKD 765 (1871)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG---------------~~~~~----------~----K-----~li~~~k~ 765 (1871)
..+++.+ ++.++.++-+++.-+..+....- -..++ + + ..+..+..
T Consensus 424 p~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~ 502 (810)
T 3now_A 424 HALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCA 502 (810)
T ss_dssp HHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHH
Confidence 4455554 56789999999988888876321 00000 1 1 34555666
Q ss_pred hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCC
Q 000200 766 TGLQSSAAATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 843 (1871)
Q Consensus 766 ~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d 843 (1871)
+ |.+.++.||..|...|+-+-. -+..+..+ .+.=|.
T Consensus 503 L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~--------------------------------------- 540 (810)
T 3now_A 503 L-AKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKA--------------------------------------- 540 (810)
T ss_dssp H-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHH---------------------------------------
T ss_pred H-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHH---------------------------------------
Confidence 6 889999999999998887742 12344443 222223
Q ss_pred CCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCC--ccchHHHHhhhcc-chhHhHHHHHHHHHH
Q 000200 844 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG--TGELFGGLRGRLY-DSNKNLVMATLITLG 920 (1871)
Q Consensus 844 ~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~--~geL~~aLk~rl~-DsNk~lv~~al~ii~ 920 (1871)
|+.-+.+..-+.|.+|..++..|+...|+.+--.. ..+.++.|-.-|. |++...+..|+..++
T Consensus 541 --------------Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~ 606 (810)
T 3now_A 541 --------------LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606 (810)
T ss_dssp --------------HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred --------------HHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 33333444456789999999998865444331111 1235666766664 434344457888888
Q ss_pred HHHHhcChhHH-hhh-hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc-c------hhhhHHHHHHHhcccCCcchHH
Q 000200 921 AVASAMGPAVE-KSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRK 991 (1871)
Q Consensus 921 ~lA~amG~~~~-k~~-k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l------~~~~~~i~~~L~~~~~~p~~r~ 991 (1871)
.||..- .... .-. -+.+|.++..|.+....||.+|..++.-++..-. . ...++.+...|.++ +...|.
T Consensus 607 NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~ 683 (810)
T 3now_A 607 NLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEETAT 683 (810)
T ss_dssp HHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHH
T ss_pred HHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHHHHH
Confidence 888753 1222 222 2568999999999999999999999887653211 1 12345555555544 456777
Q ss_pred HHHHHHHHHhcc-CCC-Cc---chhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 992 DLFDWLSKQLTG-LSG-FP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 992 e~l~wL~~~l~~-~~~-~~---~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+.. |.-..+.. .+. .. +....+.|++..|.+.+.+||+.|-.+|.-+..
T Consensus 684 ~Aa-~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 684 ACA-GALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 776 54445554 221 11 113467788889999999999999999988776
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.49 E-value=0.00099 Score=74.85 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=136.3
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCC-CCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---hccccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pK-i~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g---Lr~~F~~y 363 (1871)
.+...+.+..+..|.+|+..|..+..... .... --...+..|-+.+.+.|..+...|+.+++.|+.. .+..+.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 47778888889999999999998875432 0000 0014678888899989999999999999999864 222221
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
....++.++.-+++..+.|++.+..+|-.+... .... ...++.+...+++.+|.++..++..|....... ..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~ 161 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE 161 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HH
Confidence 335799999999999999999999999888642 1010 135678888999999999999888888665432 22
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
....+. ...+|.++.++.+.+++||..|..+|+.+..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 211221 4589999999999999999999999998874
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.48 E-value=0.0091 Score=79.38 Aligned_cols=418 Identities=14% Similarity=0.103 Sum_probs=249.3
Q ss_pred cccCcCchhHHHHHHHHHHHHhhhcCCCCchhhhhhhhchhhhcCCCCHHHHHHHHHHHHHHHHHcC--h---hhhhh-h
Q 000200 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAAD--A---DAGRY-A 91 (1871)
Q Consensus 18 erl~hK~WKaRl~ayeel~~~f~~~~d~~d~~~~~~~~l~kk~v~DsN~~aqek~leal~~~l~~a~--~---~~~~~-~ 91 (1871)
.-+.|.+=-.+..|++.+...... .+..+.......+++.+.+...|..+|+.++-+|+.+-...+ . .+... .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 345566666778888888776521 000111112234677788999999999987777765543221 1 11111 1
Q ss_pred hHHHHHHHHhhhc-C--ChhhHHHHHHHHHHHHhhcch-------hhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhC-
Q 000200 92 KEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVELEAV-------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG- 160 (1871)
Q Consensus 92 ~~~~~~lveK~L~-~--r~~tk~~a~e~~l~~vE~e~~-------~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG- 160 (1871)
..+++.+ -+.|. . .+..++.|.+++.-+..-... ..++..|+..+++.++.++-+++.+|.++...+=
T Consensus 376 ~~Lv~~l-~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 376 LKLAEAC-RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHH-HHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 2233333 33343 3 567888888887766543221 2566777888888999999999999999987431
Q ss_pred --------------CCccC----------h----h-----HHHhhchhhhcccChhHHHHHHHHHHHHHHhhCCchhhHH
Q 000200 161 --------------AKIIP----------P----K-----RILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 207 (1871)
Q Consensus 161 --------------~~vv~----------~----K-----~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~~~lk~~ 207 (1871)
-..++ . + -.+..|..++.+.++.||.+|...+..|- |..-.+..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~ 531 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGK 531 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 11111 0 1 14667778889999999999999988885 33223333
Q ss_pred Hh-hhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCCCCCCCccccCCcccccCCCC
Q 000200 208 LF-EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 286 (1871)
Q Consensus 208 L~-~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDp~dl~~~vdIl~klp 286 (1871)
+. .+.=|..+.-|. .+. + ..|......-. ..... . ||--.+....+..-+|
T Consensus 532 Vv~~Gaip~Lv~LL~------s~~--~--~~k~~Aa~AL~--nL~~~--~--------------~p~~~~~~~~~~~aIp 583 (810)
T 3now_A 532 VVQEGGVKALLRMAL------EGT--E--KGKRHATQALA--RIGIT--I--------------NPEVSFSGQRSLDVIR 583 (810)
T ss_dssp HHHTTHHHHHHHHHH------SSC--H--HHHHHHHHHHH--HHHHH--S--------------CHHHHTTTHHHHHTHH
T ss_pred HHHCCCHHHHHHHHc------cCC--H--HHHHHHHHHHH--HHhcC--C--------------ChhhhhcchhhhcHHH
Confidence 32 111122223331 111 1 11111110000 00000 0 0000000000111122
Q ss_pred chhhhhhhhcc-ChHHHHHHHHHHHHhhhcC-C----CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--cc
Q 000200 287 KSGFWEGVKAT-KWSERKDAVAELTKLASTK-R----IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RT 358 (1871)
Q Consensus 287 k~~f~~~l~s~-KWkeRkEaLe~l~~l~~~p-K----i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gL--r~ 358 (1871)
-+.+-+.+. .=..+.+|+..|..|++.+ . +... ..+..|-.++.+.|..|...|+.||+.|+.+- +.
T Consensus 584 --pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a---G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 584 --PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE---QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp --HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred --HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 244444432 2233568999999887653 1 1111 13667777788889999999999999999753 22
Q ss_pred ccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhc---CCCh---hhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 359 HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---CLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 359 ~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~---~~~l---~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
.|. .....++.++.-+...+..|+.++..||-.+.... +-.+ ..+++.+...+.+.++.+|.+++.-|.....
T Consensus 659 ~~v-~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFE-GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHH-SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHH-hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 232 11368899999999999999999999999887620 1011 2366788889999999999998888877766
Q ss_pred hCChhHHHHhh-hhhHHHHHhhhCCC---CHHHHHHHHHHHHHHHHH
Q 000200 433 TSSKAAVLKVH-KDYVPICMECLNDG---TPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 433 ~~~~~~~~~~~-k~~~~~l~k~l~Ds---~~~VR~aA~~~l~~lmk~ 475 (1871)
. .+.....+. ..++++++.++.++ +++|++.|.++|..+++.
T Consensus 738 ~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 A-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp T-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 3 332222333 24899999999655 899999999999888753
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.44 E-value=0.0064 Score=65.77 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=156.4
Q ss_pred cccCCCCchhhhh----hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Q 000200 280 DILTPLEKSGFWE----GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR 354 (1871)
Q Consensus 280 dIl~klpk~~f~~----~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~ 354 (1871)
=|..++.+ .|.+ -+.+.-|..||.||--+-.+... .+.-|..+++-|-..+. |--|.+-+.-++.+|.+|+
T Consensus 24 i~~a~~d~-~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~ 99 (253)
T 2db0_A 24 LIMAKYDE-SVLKKLIELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK 99 (253)
T ss_dssp HHHHHHCH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhH-HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH
Confidence 34445543 4554 45778899999999988877642 23337778888877777 8888888888888888886
Q ss_pred Hhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh
Q 000200 355 GLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 355 gLr~~F~~-y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~ 433 (1871)
- .| -++.++|.+++-+.=--+.++=-+.-+|..++..+...+..+.+||..-+.+||-.=|..+++|+.-.=.+
T Consensus 100 i-----~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 100 E-----KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred h-----CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 4 33 37889999999877767777878889999999875455778899999999999988899999998854444
Q ss_pred CChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC--hhHHHHHhhcCC---HHHHHHHHHHHh
Q 000200 434 SSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRPLERSIEKLD---DVRRNKLSEMIA 501 (1871)
Q Consensus 434 ~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G--e~~l~~~l~~Ld---~~kk~KI~e~~~ 501 (1871)
+. +..-+++|-+..+|+|.+.-||-.|.++|+.+...-- -+.+..-++.+| +.-+++++|.+.
T Consensus 175 ~~-----~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SF-----KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp TH-----HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred Cc-----cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 43 3446789999999999999999999999998874322 122334444554 566778888764
No 62
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.33 E-value=0.00091 Score=79.22 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCC--CChHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH---hccccccchhhhHHHHHH
Q 000200 300 SERKDAVAELTKLASTKRIAP--GDFTEVCRTLKK-LITDVNIAVAVEAIQAIGNLARG---LRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~--~dy~eL~~~Lkk-~l~DsNv~vv~~A~~~i~~lA~g---Lr~~F~~y~~~~~~~lLe 373 (1871)
.+|..||+.|..++.+..... ...|-+ ..|-. +|.+.|..|...|+.||+.+|.+ .+..+-. ...+|+++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~--~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGM-HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHHH
Confidence 478899999988775322110 012333 34445 77888999999999999999975 2222222 268899999
Q ss_pred Hhc-cCCHHHHHHHHHHHHHHHHhcCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hh
Q 000200 374 KLK-EKKPTVAESLTQTLQAMHKAGCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KD 445 (1871)
Q Consensus 374 klK-EKK~~V~eAl~~aLda~~~~~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~ 445 (1871)
-|+ +.+..|++.+.-||-.++.. ... .. ..++.+...|++..+.++.+++..|.......+ .....+. ..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g 209 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMG 209 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTT
T ss_pred HHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcC
Confidence 999 46899999998998888753 111 11 245667788899999999999887777665532 2222222 34
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
++|.++.+|...++.||+.|..+|+.|.+.
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999876
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.31 E-value=0.00064 Score=76.97 Aligned_cols=183 Identities=12% Similarity=0.088 Sum_probs=134.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccc-cchh
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS-GSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~-~y~~ 365 (1871)
-+..-+.+..+..|.+++..|..+.. ++..... --...+..|...+.+.|..+...|+.+++.|+.+-..... -...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 46777888889999999999988874 2221100 0012677888889989999999999999999875432211 1234
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC-h-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHH
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 439 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~-l-----~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~ 439 (1871)
..+|.+++-+++....|+..+..+|-.+... ... . ..+++.+...+++.++.++..++..|....... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999998888888642 100 0 235677888999999999999998888776433 2222
Q ss_pred HHhhh-hhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 440 LKVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 440 ~~~~k-~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
..+.. ..++.++.++.+.+++||..|+.+|+.+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 22223 48899999999999999999999998664
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.27 E-value=0.0048 Score=67.78 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccccc-chhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCC
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 400 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~-y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~ 400 (1871)
++.+....|.+++.+.|..+...|+.+|+.|+.+=...-.. .....+|.+++-+++..+.|++.+..+|-.+... ...
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence 34556678888889999999999999999999653221111 1236899999999999999999988888887532 101
Q ss_pred h------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 401 L------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 401 l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
. ...++.+...|++.+|.+|..++.-|...... .......++ ..++|.++..+.+.+++||..|+.+|+.+.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 12567888999999999999888777655543 222222222 458999999999999999999999999987
Q ss_pred H
Q 000200 474 K 474 (1871)
Q Consensus 474 k 474 (1871)
.
T Consensus 167 ~ 167 (210)
T 4db6_A 167 S 167 (210)
T ss_dssp T
T ss_pred c
Confidence 5
No 65
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.25 E-value=0.0045 Score=69.40 Aligned_cols=186 Identities=18% Similarity=0.123 Sum_probs=137.9
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc-CCCCCC-ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc---cccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR---THFSGS 363 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~-pKi~~~-dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr---~~F~~y 363 (1871)
.+..-+.+.....|..++..|..+... +..... --...+..|...+.|.+..+...|+.+++.|+.+-. ..+.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 125 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 125 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--
Confidence 466677888899999999999888753 221100 001357788888889999999999999999996322 1121
Q ss_pred hhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh------hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChh
Q 000200 364 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 437 (1871)
Q Consensus 364 ~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l------~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~ 437 (1871)
....++.+++-+++..+.|+..+..+|-.+... .-.. ..+++.+...+.+.+|.+|..++..|...... .+.
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 203 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PTS 203 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-BHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHH
Confidence 236799999999999999999999988888642 1000 12567888999999999999998888876653 222
Q ss_pred HHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 438 AVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 438 ~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
....+. ..+++.++..+.+.+++||+.|..+|+.+...-+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 222222 34789999999999999999999999999876554
No 66
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.24 E-value=0.0011 Score=84.11 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=180.5
Q ss_pred HHHHHhhhhcCChhhHHHHHHHHHHHH----------HHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhh
Q 000200 720 ERLYKIMKDHKNPKVLSEGILWMVSAV----------EDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 789 (1871)
Q Consensus 720 ~~l~~~~~~~KnPKv~~e~l~wl~~ai----------~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~ 789 (1871)
..++..+....+|.+|.++...|+.+- -+.| .|+.+..+ |.+.|+.||..|+..|+.|-.
T Consensus 103 p~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G--------aIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~- 172 (510)
T 3ul1_B 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG--------AIPAFISL-LASPHAHISEQAVWALGNIAG- 172 (510)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--------HHHHHHHH-TTCSCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC--------CHHHHHHH-HcCCCHHHHHHHHHHHHHHHh-
Confidence 334444444556666666655444432 2223 34555666 999999999999999988742
Q ss_pred hCchhHhhh--hcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCCh
Q 000200 790 VGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW 867 (1871)
Q Consensus 790 ~G~~l~~~l--~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~W 867 (1871)
-++..+..+ .+.-+.++..|... . .........|.....-+.-..+.+..+..+....+-+.|+.-+.+.+.
T Consensus 173 d~~~~r~~v~~~G~i~~Ll~lL~~~-----~-~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~ 246 (510)
T 3ul1_B 173 DGSAFRDLVIKHGAIDPLLALLAVP-----D-LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246 (510)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTCSS-----C-GGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH
T ss_pred CCHHHHHHHHHcCChHHHHHHHHhc-----c-chhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH
Confidence 134455554 34445555554211 0 000000000000000000000011222223333344567778899999
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh-hhhhhHHHHHHhc
Q 000200 868 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLG 946 (1871)
Q Consensus 868 K~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~-~k~l~~~il~~l~ 946 (1871)
.+|..|+..+..+....+.+++.-....++..|-..|.+.+..++..++.+++.|+.+-....... -...++.++..|.
T Consensus 247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence 999999999998875332232221113467777788888999999999999999976432221111 2357788888999
Q ss_pred cCchhHHHHHHHHHHHHHHhcc-------chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcch-----hhhh
Q 000200 947 DNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA-----AHLL 1014 (1871)
Q Consensus 947 D~K~~vR~aa~~alda~~~~~g-------l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~-----~~~~ 1014 (1871)
+.+..+|..+..+|..+..... -..+++.+...|.++ ++..|.+...-|. .+....+.... ...+
T Consensus 327 ~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~-Nl~~~~~~~~~~~L~~~g~i 403 (510)
T 3ul1_B 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAIT-NYTSGGTVEQIVYLVHCGII 403 (510)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHH-HHHHHCCHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHH-HHHccCCHHHHHHHHHCCCH
Confidence 9999999999988876643211 123456677777754 5778888765554 34332221111 2357
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1015 KPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1015 ~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
.|++..|.+.+.+++..+-.+|..++..
T Consensus 404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 404 EPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998888763
No 67
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.05 E-value=1.7 Score=59.87 Aligned_cols=382 Identities=13% Similarity=0.062 Sum_probs=208.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcChhhhhhhhHHHHHHHHhhhcCChhhHHHHHHHHHHHHhhc--ch----hh-HH---HHH
Q 000200 64 SNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DV-FL---DVM 133 (1871)
Q Consensus 64 sN~~aqek~leal~~~l~~a~~~~~~~~~~~~~~lveK~L~~r~~tk~~a~e~~l~~vE~e--~~----~~-v~---e~l 133 (1871)
.|......+++++..|+...+... -....++..+.++.+ +.+..+..|.+|+...+... .. +. +. ..+
T Consensus 207 ~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~ 284 (1049)
T 3m1i_C 207 SSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1049)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH
Confidence 467778888888888876543211 011345666666655 36888889999998888652 11 11 11 111
Q ss_pred HHHhhc-cCchh-------------HHHHHHHHHHHHHhhCCCcc-----------ChhHHHhhchhhhcccChhHHHHH
Q 000200 134 EKAIKN-KVAKA-------------VVPAIDVMFQALSEFGAKII-----------PPKRILKMLPELFDHQDQNVRASS 188 (1871)
Q Consensus 134 l~~~~~-K~PKv-------------vaaai~~l~~~l~~FG~~vv-----------~~K~ilk~l~~lf~~~dk~VR~ea 188 (1871)
+..+.. =.|.+ -.+-+..+.+.+..||-..+ .+..++..+=.+..+.|-.|+..+
T Consensus 285 l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~ 364 (1049)
T 3m1i_C 285 LQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTT 364 (1049)
T ss_dssp HHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 111111 11111 01112233344444442110 022345555555567888888888
Q ss_pred HHHHHHHHHhh--CCchhhHHHhhhchHHHHHHHHHHHHhcCCCCCCcchhhhHHhHhhhhhhcccCCCCCCCCCCCCCC
Q 000200 189 KGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 266 (1871)
Q Consensus 189 ~~L~vely~wl--G~~~lk~~L~~~Lkp~q~keLe~efek~~~~~~P~R~~Rs~q~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1871)
..+...+-..+ .+. . ....+|...+-+..-+.++.- |. + . +-.
T Consensus 365 lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~e-------d--------------~---~~~--- 409 (1049)
T 3m1i_C 365 LDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---PE-------E--------------V---LVV--- 409 (1049)
T ss_dssp HHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---CT-------T--------------C---CEE---
T ss_pred HHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---Cc-------c--------------e---eee---
Confidence 87776665533 121 1 122344444444444444310 10 0 0 000
Q ss_pred CCCCCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCC-hHHHHHHHHHHhc--cccHHHHH
Q 000200 267 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD-FTEVCRTLKKLIT--DVNIAVAV 343 (1871)
Q Consensus 267 ~~~iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~d-y~eL~~~Lkk~l~--DsNv~vv~ 343 (1871)
+-|+.+ ++- +|.+. +.-|..|+.+-+-|..+... .+.+ ..-+...|...+. ..|-...-
T Consensus 410 --~dd~~e-----~~r------~~~~d--~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~~~~W~~~e 471 (1049)
T 3m1i_C 410 --ENDEGE-----IVR------EFVKE--SDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGSEWSWHNIN 471 (1049)
T ss_dssp --ECTTSC-----EEE------CSSCC--HHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred --eCCCCc-----chH------hhhcc--chHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 001100 000 01110 11267777666655555421 1111 2233444555554 35667788
Q ss_pred HHHHHHHHHHHHhccccc-cchhhhHHHHHHHhc------cCCHHHHHHHHHHHH---HHHHhcCCChhhhHHHHHHHhh
Q 000200 344 EAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLK------EKKPTVAESLTQTLQ---AMHKAGCLNLVDVVEDVKTSVK 413 (1871)
Q Consensus 344 ~A~~~i~~lA~gLr~~F~-~y~~~~~~~lLeklK------EKK~~V~eAl~~aLd---a~~~~~~~~l~~~~e~i~~al~ 413 (1871)
.|+-+++.+|.++...-. .|...+++.++. +- +.++.|+..+..++- .|+..+.--|..+++.+..+|.
T Consensus 472 aal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 472 TLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH 550 (1049)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 899999999988865422 345555655554 32 455655543333333 2222211126667788888999
Q ss_pred cCCchhHHHHHHHHHHHHhhCChhHH-------HHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhC-hhHHHHHh
Q 000200 414 NKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSI 485 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~~~~~~~-------~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~G-e~~l~~~l 485 (1871)
+.+|.|+..+..-|.+..+.+..... .+.+..++..+..++++-+.+-+...+++++.++...| .....+++
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~ 630 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLL 630 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999888888776543321 14456677777788888888888999999999999999 35577788
Q ss_pred hcCCHHHHHHHHHHHh
Q 000200 486 EKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 486 ~~Ld~~kk~KI~e~~~ 501 (1871)
..|=+.-..+...++.
T Consensus 631 ~~l~~~~~~~~~~~~~ 646 (1049)
T 3m1i_C 631 SDLMQLPNMAWDTIVE 646 (1049)
T ss_dssp HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766555555555553
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.42 E-value=0.03 Score=66.28 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHH---HcccCCCCCCccchHHHHhh-hccchhHhHHHHHHHHHHHHHHhcChhHHhhh--hhhhHHH
Q 000200 868 KVRLESIEAVNKILE---EANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDI 941 (1871)
Q Consensus 868 K~RkEaLe~v~~il~---~ankrI~p~~~geL~~aLk~-rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~--k~l~~~i 941 (1871)
..|..||+.+..+++ .+|..++- |-++ .|-. -|...|..+...|+.+|+.+|.. .+.+.+++ ...+|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~---G~l~-~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQL---SGMH-LLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHT---THHH-HHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHc---CCHH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 468999999999995 24444433 4344 4444 56888999999999999999863 34455443 2688999
Q ss_pred HHHhc-cCchhHHHHHHHHHHHHHHhc--cch-----hhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC-C-cc--
Q 000200 942 LKCLG-DNKKHMRECTLTVLDAWLAAV--HLD-----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG-F-PD-- 1009 (1871)
Q Consensus 942 l~~l~-D~K~~vR~aa~~alda~~~~~--gl~-----~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~-~-~~-- 1009 (1871)
+..|. +.+..+|..|..||..+.... +.. ..++.+...|.++ ++.+|.++. |+...|..... . ..
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~-~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSA-FLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHH-HHHHHHHHHCGGGHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH-HHHHHHHhCChHHHHHHH
Confidence 99998 468899999999998876422 122 3455677777754 577888776 44445543321 1 11
Q ss_pred hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHh
Q 000200 1010 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1042 (1871)
Q Consensus 1010 ~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~ 1042 (1871)
....++|++..|.+.+.+||..|-.+|+.++..
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 134677799999999999999999999999875
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.32 E-value=6.2 Score=54.03 Aligned_cols=293 Identities=15% Similarity=0.163 Sum_probs=169.1
Q ss_pred hhhhHHHHHHHHHHHhhch------------HhHHHHHHHhh----hhcCChhhHHHHHHHHHHHHHHhccCccchHhHH
Q 000200 697 KTRAHAMKCLTTFSEAVGP------------GFIFERLYKIM----KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 760 (1871)
Q Consensus 697 K~r~~a~e~L~~~aE~~~~------------~~V~~~l~~~~----~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li 760 (1871)
...+.+--+|-+++|.+.. ..+++-+...+ ....+|+|+.-++..+++--+-|....=-+.+++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 4578888888888887542 13443332221 2378999999999999988887776554567888
Q ss_pred HHHhh-hcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000200 761 DFCKD-TGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 839 (1871)
Q Consensus 761 ~~~k~-~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~ 839 (1871)
.++-. .|+.++|+.||.+|..++..+-+-.++.|.+|+++ +++.|..-+.... + |...
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~-~----~~~~------------ 596 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISV-S----PVTD------------ 596 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCC-C----CCCC------------
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcC-C----CCCc------------
Confidence 88655 24999999999999999999888877766666533 6666554443211 0 1100
Q ss_pred CCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccC--CCCCCccchHHH----Hhhhccc-----hh
Q 000200 840 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR--IQPAGTGELFGG----LRGRLYD-----SN 908 (1871)
Q Consensus 840 ~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankr--I~p~~~geL~~a----Lk~rl~D-----sN 908 (1871)
.|. | ....+++.. +.....+..-.|++..|+...+.- -++..+..|+.. +...+.. .+
T Consensus 597 --~~~-~-----~~~~~~~~~---~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 597 --MDA-P-----VPTLNSSIR---NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp ----C-S-----SCCHHHHHH---TTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred --ccc-c-----ccchhhhcc---cCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 000 0 000112211 224566677777777777532100 011111222222 2222211 22
Q ss_pred HhHHHHHHHHHHHHHHhcChh------HHhhhhhhhHHHHHHhc--cCchhHHHHHHHHHHHHHHhcc--chhhhHHHHH
Q 000200 909 KNLVMATLITLGAVASAMGPA------VEKSSKGVLSDILKCLG--DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTT 978 (1871)
Q Consensus 909 k~lv~~al~ii~~lA~amG~~------~~k~~k~l~~~il~~l~--D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~ 978 (1871)
+.-+...+..++.+|++.... +....+..++.++..|. .+...||+++..++..++...| +.+++|.+.+
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~ 745 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLIS 745 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHH
Confidence 222334566678888877422 44445556666655554 3568999999999999999987 4555665555
Q ss_pred HHhcccCCcchHHHHHHHHHHHhccCCCC--cchhhhhhH----HhhhcC
Q 000200 979 ALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKP----ASIAMT 1022 (1871)
Q Consensus 979 ~L~~~~~~p~~r~e~l~wL~~~l~~~~~~--~~~~~~~~p----~~~~L~ 1022 (1871)
.|-+ ...+..=.+.|.++..-+...+.. +.+..++.| ++.-|+
T Consensus 746 ~ll~-~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~ 794 (980)
T 3ibv_A 746 ILLN-SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLS 794 (980)
T ss_dssp HHHH-HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5542 122344567776666555555542 234444555 444554
No 70
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.31 E-value=1.3 Score=60.39 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHh----ccccHHHHHHHHHHHH--HHHHHhccccccchhhhHHHHHH
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----TDVNIAVAVEAIQAIG--NLARGLRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l----~DsNv~vv~~A~~~i~--~lA~gLr~~F~~y~~~~~~~lLe 373 (1871)
+.|+.|=..|...+ +.-+|.|..++..|-+.| .|.+-.-..-|+.++. .+.+-+..++ .+...+++.+++
T Consensus 148 ~VR~~AQ~~L~~~~---~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~-~~~~~~~~ali~ 223 (997)
T 1vsy_5 148 DIYKPAQGTLVHCM---KQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDY-KDIGRLIFLLIE 223 (997)
T ss_dssp HHHHHHHHHHHHHH---TTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcCh-HHHHHHHHHHHH
Confidence 46777766666554 334677776666555555 3566667777777766 5666666665 478899999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHhcCCC--------------------------------------hh----hhHHHHHHH
Q 000200 374 KLKEKKPTVAESLTQTLQAMHKAGCLN--------------------------------------LV----DVVEDVKTS 411 (1871)
Q Consensus 374 klKEKK~~V~eAl~~aLda~~~~~~~~--------------------------------------l~----~~~e~i~~a 411 (1871)
....-|++|+.-+..+.+.+..+...+ .. .+.+.+++.
T Consensus 224 ~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~ 303 (997)
T 1vsy_5 224 CCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKREYYLSLLVDLQDKLLDK 303 (997)
T ss_dssp TCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987777777776642110 00 111111122
Q ss_pred hhc-CC--chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhH
Q 000200 412 VKN-KV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 480 (1871)
Q Consensus 412 l~~-Kn--P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~ 480 (1871)
.++ .. .....-++.||...+....... -...+..+++.+.|..|.+|+-|..++..+++.+-.+.
T Consensus 304 ~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~----~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il~~~k~~~ 371 (997)
T 1vsy_5 304 LDNEKDMGWKIRMFILRFVTQIQSNLESKP----DKRAVFSIISQISTKHPEIIHLVVKSLLSTCNKIISLS 371 (997)
T ss_dssp HHSSTTCCSCHHHHHHHHHHHHTCCSSCCC----CHHHHHHHHGGGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 11 1222222223222222111110 13457789999999999999999999999888765544
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.95 E-value=0.12 Score=58.36 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=129.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhH
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 368 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~ 368 (1871)
++.+-+.+++=+.-.-|+.-|..|+.+--+.+++|.-+..+|+.++.+-|=.+.-.|+..+|.+ .....++-++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 4554455555555555666677788888888999999999999999999999999999998887 3334455666
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHhcC--CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 369 PVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 369 ~~lLeklKEKK~~V~eAl~~aLda~~~~~~--~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
.-++.=++-|+..|-.|+..++..+..+.. --+.+++++|.+.+++++|-++.-.+.-+.+.+...=+..+...+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 666666699999999999999999988610 128899999999999999999999999999998753222221112233
Q ss_pred HHHHHhhh-CCCCHHHHHHHHHH
Q 000200 447 VPICMECL-NDGTPEVRDAAFSV 468 (1871)
Q Consensus 447 ~~~l~k~l-~Ds~~~VR~aA~~~ 468 (1871)
...+-.+. -.+.|.+|+.|-..
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHH
Confidence 33332333 57889999888643
No 72
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.49 E-value=0.019 Score=58.89 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH
Q 000200 327 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE 406 (1871)
Q Consensus 327 ~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e 406 (1871)
...|...+.|.|..+-..|+.+++.+.. . -++.+++.++|..+.||..+..+|-.+ .-.+.++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~--------~---~~~~L~~~L~d~~~~vR~~A~~aL~~~------~~~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD--------E---AFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS--------T---THHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc--------h---HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCHHHHH
Confidence 4445555666666665555555543311 1 158999999999999998776665433 2245688
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHH
Q 000200 407 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 471 (1871)
Q Consensus 407 ~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~ 471 (1871)
.+...+++.+|.||..+...|.+.- . ...++.+...++|.++.||.+|..+|+.
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~----~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c-------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8889999999999998888777542 1 2347888999999999999999999864
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.18 E-value=0.23 Score=56.20 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=141.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhh
Q 000200 858 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 937 (1871)
Q Consensus 858 l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l 937 (1871)
+++=+.|+|=.+|..||-.+++++..+++....-.+-+++..+-.-+.+.|-.+..-|+.|+..|-.+.-.+=+.|.| +
T Consensus 38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K-l 116 (265)
T 3b2a_A 38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK-A 116 (265)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH-H
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH-H
Confidence 455689999999999999999999987666666567788888888889999999999999999999998777677765 4
Q ss_pred hHHHHHHhccCchhHHHHHHHHHHHHHHhcc-chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhH
Q 000200 938 LSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1016 (1871)
Q Consensus 938 ~~~il~~l~D~K~~vR~aa~~alda~~~~~g-l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p 1016 (1871)
+..+....+++...++..+.+.+... ..+. ...+...+..-+.+. |++++.-.+..+.+--.....+.-+..++.-
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~e 193 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 56777888899999999999999998 4444 466666777777543 7999999999887654433333334545555
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 1017 ASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 1017 ~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
+---|...++.+|+.|=.+|..+..
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 5556777799999999888876654
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.14 Score=55.64 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=119.0
Q ss_pred CcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhc----cchhHhHHHHHHHHHHHHHHhcChh
Q 000200 854 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----YDSNKNLVMATLITLGAVASAMGPA 929 (1871)
Q Consensus 854 it~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl----~DsNk~lv~~al~ii~~lA~amG~~ 929 (1871)
+-++++.-+.|.-|.+||.||--+-.|..+ |-||...|...| .-|- |.-.-+.||.+.|-=
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~---------~~el~epl~~kL~vm~~ksE------aIpltqeIa~a~G~l 97 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKT---------REDLYEPMLKKLFSLLKKSE------AIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CGGGHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhhcc------cCchHHHHHHHHhHH
Confidence 345667778999999999999999988864 456665554322 1111 333445677777743
Q ss_pred HH---hhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhcc--chhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccC
Q 000200 930 VE---KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1004 (1871)
Q Consensus 930 ~~---k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~g--l~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~ 1004 (1871)
.. .-++.++|-++..+.=..+.+|=....+|..++.+-. +..++.+|...|.++ |-.-|..+|.|+. .+...
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~-alGen 174 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIE-AMGEN 174 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHH-TCCTT
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHH-HHhcc
Confidence 32 2477888999988777778889899999999988764 466777888888865 4567888999976 22111
Q ss_pred CCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000200 1005 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1040 (1871)
Q Consensus 1005 ~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m 1040 (1871)
. .....+.+.-+++.|.|++.-||..|-+.|+.+-
T Consensus 175 ~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA 209 (253)
T 2db0_A 175 S-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209 (253)
T ss_dssp T-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred C-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHH
Confidence 1 1234556666999999999999999988887653
No 75
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.01 E-value=0.27 Score=67.09 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=97.8
Q ss_pred chhhhcCCCCHHHHHHHHHHHHHHHHHcCh-hhh--hhhhHHHHHHHHhhhc-C-ChhhHHHHHHHHHHHH-hh---cch
Q 000200 56 LFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWV-EL---EAV 126 (1871)
Q Consensus 56 l~kk~v~DsN~~aqek~leal~~~l~~a~~-~~~--~~~~~~~~~lveK~L~-~-r~~tk~~a~e~~l~~v-E~---e~~ 126 (1871)
.+...+.|+.-..|-.+.|.+..++..+-. ... ...-+|+..++.+||. + .+-|..-= ..|+.|+ +. ...
T Consensus 512 ~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W-~~~i~~~~~~~DprR~ 590 (997)
T 1vsy_5 512 LCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIW-STLAWWLPAVVDLRRS 590 (997)
T ss_dssp HHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHH-HHHHHHHHHHSCGGGC
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHH-HHHHHHHhcCCChhhh
Confidence 445678999999999999998887765322 122 2255788899999997 5 55555532 2222332 22 223
Q ss_pred hhHHHHHHHHh-----hccCchhHHHHHHHHHHHHHhhCCCccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhh
Q 000200 127 DVFLDVMEKAI-----KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 199 (1871)
Q Consensus 127 ~~v~e~ll~~~-----~~K~PKvvaaai~~l~~~l~~FG~~vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wl 199 (1871)
..++|.|..+- ..-.+=..+.-+..|..++.+.|-+.-..+.++..+- ++|.-++||++-..++..++...
T Consensus 591 ~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 591 KTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp HHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 46666663211 1223445566789999999999998666888887777 99999999999999998888775
No 76
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.94 E-value=18 Score=49.66 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=104.9
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH----hccccccchhhhHHH
Q 000200 296 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPV 370 (1871)
Q Consensus 296 s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~g----Lr~~F~~y~~~~~~~ 370 (1871)
++.=..|++|-+.|..+-++| ++- ..+..++. +.+..+-..|+..+....+. +...-..+.|..+-.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p-----~~~---~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP-----DAW---QKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST-----TGG---GGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCc-----hHH---HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHH
Confidence 344457999999998886665 222 12233333 67888899999999887753 223333455554444
Q ss_pred HHHHhc-cC-----CHHHHHHHHHHHHHHHHhcC-CChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhh---CCh----
Q 000200 371 LLEKLK-EK-----KPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET---SSK---- 436 (1871)
Q Consensus 371 lLeklK-EK-----K~~V~eAl~~aLda~~~~~~-~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~---~~~---- 436 (1871)
.+.... +- .+.|+..+..++-.++.+.. -.-.++++++...++ .++..+...+..|...-+. ...
T Consensus 99 ~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~ 177 (1049)
T 3m1i_C 99 MIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMT 177 (1049)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 444432 11 35899999999999988721 124478888888886 4555555445544433321 111
Q ss_pred --------hHHHHhhhhhHHHHHhhhCC-CCHHHHHHHHHHHHHHHHHhC
Q 000200 437 --------AAVLKVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 437 --------~~~~~~~k~~~~~l~k~l~D-s~~~VR~aA~~~l~~lmk~~G 477 (1871)
..+...+..+...+..++++ .++++|.++.+|+..++..+.
T Consensus 178 ~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 178 QAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 11222234456666777754 357899999999987765443
No 77
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.60 E-value=2.4 Score=58.28 Aligned_cols=383 Identities=12% Similarity=0.072 Sum_probs=212.8
Q ss_pred HHHHHHhcc--ccHHHHHHHHHHHHHHHHHhccc-cccchhhhHHHHHHHhc-----cCCHHHHHHHHHHHHH---HHHh
Q 000200 328 RTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQA---MHKA 396 (1871)
Q Consensus 328 ~~Lkk~l~D--sNv~vv~~A~~~i~~lA~gLr~~-F~~y~~~~~~~lLeklK-----EKK~~V~eAl~~aLda---~~~~ 396 (1871)
..|+..+.+ .+-...-.++=|+|.|+.|+... -.++...++|.++.-.. |.|+.|++.+.-++-. |...
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 334444442 45777778888999999999865 77889999999988765 5777777655444432 2222
Q ss_pred cCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HHHhhhhhHHHHHhhhCCCCHHHHHHHHHHH
Q 000200 397 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 469 (1871)
Q Consensus 397 ~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l 469 (1871)
+..-|..++..+..+|...+|.|...+..=|.+.-+.+...- ..+++..++..+..++++-++.-+...++++
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 112266777888889988889887765554444433332211 1234566777788888888999999999999
Q ss_pred HHHHHHhChhH-HHHHhhcCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCCCCCCCCcchhhhhhhhhhcccCCCCC
Q 000200 470 AAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPV 548 (1871)
Q Consensus 470 ~~lmk~~Ge~~-l~~~l~~Ld~~kk~KI~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 548 (1871)
|+++..++... ...+++.|=+.--.+..+.++.+.. . |.--......+.-.
T Consensus 614 ~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~-----~--------------~~~~~d~~~~~~l~--------- 665 (1023)
T 4hat_C 614 GIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTA-----N--------------PTLLLDSETVKIIA--------- 665 (1023)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----C--------------TTGGGCHHHHHHHH---------
T ss_pred HHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhc-----C--------------chhhcCHHHHHHHH---------
Confidence 99999999544 6667777766666666666543100 0 00000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCHHHHHHHHhccCcHhHHHhhhhccHHHHHHHHHHHHHH
Q 000200 549 SAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQ 628 (1871)
Q Consensus 549 ~~~~~~~k~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~l~~~~i~~~L~s~~WK~RL~a~e~l~~~ 628 (1871)
..=++-..+..-++..+..++. .-|..=++-|+...+.
T Consensus 666 -----------------------------------------~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~y~~~s~~ 703 (1023)
T 4hat_C 666 -----------------------------------------NIIKTNVAVCTSMGADFYPQLG-HIYYNMLQLYRAVSSM 703 (1023)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 0000000000011112222211 1233334444444333
Q ss_pred HHh-h---hccc--------------hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHH-HHHhcCCCCccchhhhccch
Q 000200 629 VEA-V---QNLD--------------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY-LAATATKFPKKCVVLCLLGI 689 (1871)
Q Consensus 629 v~~-~---~~~~--------------~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~-la~~~~~fs~~~~~~~l~~l 689 (1871)
+.. . .... ....++.+|+.+.+.-.+-.-+.+.-.++.+.. .....+..-..++-.++..+
T Consensus 704 i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~i 783 (1023)
T 4hat_C 704 ISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV 783 (1023)
T ss_dssp HHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHH
Confidence 321 0 0000 012334444444332222122223333332222 22222223345667788888
Q ss_pred hhccccchhhhHHHHHHHHHHHhhchHhHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHHhccC--ccc---hHhHHHH
Q 000200 690 SERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKD--HKNPKVLSEGILWMVSAVEDFGVS--HLK---LKDLIDF 762 (1871)
Q Consensus 690 veKlgD~K~r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~--~KnPKv~~e~l~wl~~ai~eFG~~--~~~---~K~li~~ 762 (1871)
|+|+|+. +....-.+|-.+.|. -+..+.+ .-+|..+.+-...+..++...=.. .++ .|.+|+.
T Consensus 784 v~~~~~~-~~~~~~~il~~vf~~---------Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~ 853 (1023)
T 4hat_C 784 VEKVGHM-IPQGVILILQSVFEC---------TLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDA 853 (1023)
T ss_dssp HHHHGGG-CHHHHHHHHHHHHHH---------HHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHh-hhhhhHHHHHHHHHH---------HHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHH
Confidence 8888863 444444444444333 2222211 457999999999998887753211 233 4789998
Q ss_pred HhhhcCCCccHHHHHHHHHHHHHHHhhhC
Q 000200 763 CKDTGLQSSAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 763 ~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+.=+ +.|++..|=..+++.+-.+...+.
T Consensus 854 ~~~a-~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 854 ICWA-FKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHH-HTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCchHHHHHHHHHHHHHHHHHH
Confidence 8775 999999999999999988876554
No 78
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.56 E-value=0.17 Score=53.27 Aligned_cols=109 Identities=17% Similarity=0.312 Sum_probs=84.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-. +-+|++-.| -++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 18 l~~~dw~~-------ileicD~I~--~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL-------ILDICDKVG--QSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH-------HHHHHHHHT--TSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 56788964 333343322 2344457999999999999999999999999999999999999864 466887
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000200 940 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1871)
Q Consensus 940 ~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1871)
.+...+...-+.|++-+++.+..|.....-++=+..|.+.
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 128 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 7777776677899999999999999987655545545443
No 79
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.49 E-value=22 Score=48.60 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=108.3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHhccc----cccchhhhHHH
Q 000200 298 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDV---NIAVAVEAIQAIGNLARGLRTH----FSGSSRFLLPV 370 (1871)
Q Consensus 298 KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~Ds---Nv~vv~~A~~~i~~lA~gLr~~----F~~y~~~~~~~ 370 (1871)
.=..|++|.+-|..+-++|- -....-.++.++ |..+-.-|++++....+.|... =..+.|..+-.
T Consensus 21 d~~~r~~A~~~L~~~q~sp~--------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~ 92 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSST--------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWS 92 (980)
T ss_dssp CHHHHHHHHHHHHHHHHSTT--------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcChh--------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHH
Confidence 56789999888888766542 234444555532 7899999999999988866665 55666777777
Q ss_pred HHHHhc--cCCHHHHHHHHHHHHHHHHhc-CCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh----h-----CC---
Q 000200 371 LLEKLK--EKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----T-----SS--- 435 (1871)
Q Consensus 371 lLeklK--EKK~~V~eAl~~aLda~~~~~-~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~----~-----~~--- 435 (1871)
++.+.. .-.+.|+..+..++-.++.+. -..-.++++++...+.+.++. ....++-|.|. . .+
T Consensus 93 ~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~---~~~~~~LriL~~i~EEv~~~~~~~~~ 169 (980)
T 3ibv_A 93 YIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQS---EFSNFYLKVLLSIGDEIADSLVLKTD 169 (980)
T ss_dssp HHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHCCCCSCCCH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChh---HHHHHHHHHHHHhHHHHHhcccccCH
Confidence 777653 345689999999999999871 123457888898888766652 23334444443 1 00
Q ss_pred ----hh-HHHHh-----hhhhHHHHH----hhhCCCCHHHHHHHHHHHHHHHHHhC
Q 000200 436 ----KA-AVLKV-----HKDYVPICM----ECLNDGTPEVRDAAFSVLAAIAKSVG 477 (1871)
Q Consensus 436 ----~~-~~~~~-----~k~~~~~l~----k~l~Ds~~~VR~aA~~~l~~lmk~~G 477 (1871)
+. .+.+. +..+.+.++ .+.+..+++++..+.+||+..+.-+.
T Consensus 170 ~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~ 225 (980)
T 3ibv_A 170 VQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN 225 (980)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Confidence 00 01111 111234333 44444788999999999998886433
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.08 E-value=0.12 Score=52.96 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=68.5
Q ss_pred hhHHHHhhCCChHHHHHHHHHHHHHHhhccCccchHHHHHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccchHHHHH
Q 000200 1258 LPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVA 1337 (1871)
Q Consensus 1258 lP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skvf~~l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Kal~~ia 1337 (1871)
+|.|+.-+.|+...||...-.. +..+. ....++.|++.+++.|+.+|.+++.-|+.+ | ...+++.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~a---L~~~~-~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~-----~~~a~~~L~ 110 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWI---IGNFQ-DERAVEPLIKLLEDDSGFVRSGAARSLEQI----G-----GERVRAAME 110 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHH---HGGGC-SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----C-----SHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH---HHhcC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-----cHHHHHHHH
Confidence 4888888888888888754333 33332 356788999999999999999999999875 2 446788888
Q ss_pred HHhccCChhHHHHHHHHHH
Q 000200 1338 SLTAERDGEIRKAALNTLA 1356 (1871)
Q Consensus 1338 ~~i~drD~~VR~AALn~l~ 1356 (1871)
..+.|.|+.||.+|..+|+
T Consensus 111 ~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 111 KLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999886
No 81
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.05 E-value=0.2 Score=54.12 Aligned_cols=108 Identities=13% Similarity=0.309 Sum_probs=80.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.| |-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 28 ~~~~Dw~~~le----icD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSLIMD----ICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHHHHH----HHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 45679975333 3333321 244447999999999999999999999999999999999999854 356887
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 978 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~ 978 (1871)
.++..+.. .-+.||+-+++.+..|....+-+.=+..|.+
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~ 138 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISA 138 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 77777754 3369999999999999998764443444433
No 82
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=93.69 E-value=0.34 Score=51.46 Aligned_cols=112 Identities=14% Similarity=0.215 Sum_probs=83.8
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||-.=. +|=.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|-.. .+-|+
T Consensus 13 ~l~~~dw~~~l----eicD~I~~-----~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (148)
T 1mhq_A 13 SMSEQDWSAIQ----NFCEQVNT-----DPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFL 83 (148)
T ss_dssp TCSSCCHHHHH----HHHHHHHH-----SSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCCcCHHHHH----HHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHH
Confidence 34568996533 33333332 133347899999999999999999999999999999999999764 56788
Q ss_pred HHHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 939 SDILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 939 ~~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
..+...+.++ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 84 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 84 NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 8888888763 569999999999999998754433333333343
No 83
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.53 E-value=0.38 Score=51.19 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=79.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-. +-.|++--| -++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 24 l~~~dw~~-------ileicD~I~--~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWAS-------INGFCEQLN--EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHHH-------HHHHHHHGG--GSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH-------HHHHHHHHH--CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678863 333443322 2344447999999999999999999999999999999999999754 667888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchh
Q 000200 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDK 971 (1871)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~ 971 (1871)
.++..+.++ -..||+-+++.+..|.....-++
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 888888763 56899999999999999875433
No 84
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.94 E-value=0.22 Score=54.24 Aligned_cols=111 Identities=13% Similarity=0.205 Sum_probs=83.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.= -+|-.+|+. ++.+-.|.+++|++||+..|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 26 l~~~Dw~~i----leicD~I~~-----~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEYI----IGFCDQINK-----ELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHHH----HHHHHHHHH-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHHH----HHHHHHHHc-----CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 457899643 333333432 133447899999999999999999999999999999999999864 566888
Q ss_pred HHHHHhccC------chhHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q 000200 940 DILKCLGDN------KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 981 (1871)
Q Consensus 940 ~il~~l~D~------K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~ 981 (1871)
.++..+..+ -..||+-+++.+..|....+-+.-+..+-..|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 888888642 479999999999999999865443333444443
No 85
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=92.17 E-value=0.42 Score=51.20 Aligned_cols=110 Identities=19% Similarity=0.351 Sum_probs=80.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhcc-chhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~-DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+.+.||-.=.|=-| +|+. ++.+..|.+++|++||+ ..|.+++..||.++..+..=.|+.|... .+-++
T Consensus 29 l~~~Dw~~~leicD----~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWALNMEICD----IINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHHHHHHHH----HHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHHHHHHHH----HHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 45678975443333 3331 23445799999999997 6899999999999999999999999864 45688
Q ss_pred HH-HHHHhccC---chhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SD-ILKCLGDN---KKHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~-il~~l~D~---K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.. ++..+.++ ...||+-+++.+..|....+-++-+..|.+..
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y 145 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPDLTGVVTIY 145 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 87 56666542 34899999999999999876554455444443
No 86
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=92.17 E-value=0.31 Score=51.98 Aligned_cols=110 Identities=16% Similarity=0.301 Sum_probs=79.3
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccc-hhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~D-sNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
+.+.||-. .-+|=.+|+. ++.+--|.+++|++||.. .|.+++..||.++..+..=.|+.|... .+-|+
T Consensus 29 l~~~Dw~~----ileicD~In~-----~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl 99 (152)
T 3rru_A 29 VQTEDWGQ----FMHICDIINT-----TQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFV 99 (152)
T ss_dssp CCSCCHHH----HHHHHHHHHH-----STTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHH
T ss_pred CCCccHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhH
Confidence 55678973 3333333332 233447999999999985 488899999999999999999999865 45677
Q ss_pred HH-HHHHhccCc---hhHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 000200 939 SD-ILKCLGDNK---KHMRECTLTVLDAWLAAVHLDKMVPYVTTAL 980 (1871)
Q Consensus 939 ~~-il~~l~D~K---~~vR~aa~~alda~~~~~gl~~~~~~i~~~L 980 (1871)
.. ++..+.++- ..||+-+++.+..|....+-++=++.|.++.
T Consensus 100 ~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y 145 (152)
T 3rru_A 100 KENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVY 145 (152)
T ss_dssp TTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 76 555555432 3699999999999999886554455555543
No 87
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=91.56 E-value=0.32 Score=55.00 Aligned_cols=100 Identities=16% Similarity=0.304 Sum_probs=77.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhh
Q 000200 861 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVL 938 (1871)
Q Consensus 861 ~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~ 938 (1871)
.+.+.||..=.| |-.+|+. ++.+--|.+++|++||...|.+++..||.++..+..-.|+.|... .+-++
T Consensus 17 ~~~~~dw~~~le----icd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl 87 (220)
T 1dvp_A 17 LRLEPDWPSILL----ICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENC 87 (220)
T ss_dssp TCSSCCHHHHHH----HHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHH
T ss_pred CCCCcCHHHHHH----HHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHH
Confidence 345789986444 3333431 233447999999999999999999999999999999999999654 45577
Q ss_pred HHHHHHhccC-chhHHHHHHHHHHHHHHhccc
Q 000200 939 SDILKCLGDN-KKHMRECTLTVLDAWLAAVHL 969 (1871)
Q Consensus 939 ~~il~~l~D~-K~~vR~aa~~alda~~~~~gl 969 (1871)
..+...+++. -..||+-+++.+..|....+-
T Consensus 88 ~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 88 EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 7777766653 368999999999999988653
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.14 E-value=0.87 Score=55.08 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=103.3
Q ss_pred hccccchHHHHHHhhhhHHHHHHHHhcCCcccHhHHhhhhhHHHHhhCCChHHHHHHHHHHHHHHhhccCccch---HHH
Q 000200 1219 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKT---LPY 1295 (1871)
Q Consensus 1219 r~~dtN~~vl~k~Le~l~~l~~~l~~~~y~lsd~Ea~~flP~Lv~K~Gd~k~~vR~~vr~i~~~~~~vyp~skv---f~~ 1295 (1871)
-|.+++. --.||-+++..++- +.-.|++|++.|+..+.+..+.=+..+.-..|.-+---++.+... | .-+ ...
T Consensus 33 ~fn~~~~-~~~kc~~~l~kll~-l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Ns 108 (355)
T 3tjz_B 33 VFNETPI-NPRKCAHILTKILY-LINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSS 108 (355)
T ss_dssp GTTSSSC-CHHHHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHH
T ss_pred HhcCCCC-cHHHHHHHHHHHHH-HHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHH
Confidence 4555522 22355656665554 445569999999999999888777777777888777777666665 2 223 335
Q ss_pred HHhhhccCChhhHhHHHHHHHHHHHhhcCcccCccch-HHHHHHHhccCChhHHHHHHHHHHHHHHHhchhHHHHhcc
Q 000200 1296 ILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1372 (1871)
Q Consensus 1296 l~~glksKN~r~R~Ecl~el~~li~~~G~~v~~~~Ka-l~~ia~~i~drD~~VR~AALn~l~~~y~~~Gd~v~k~~g~ 1372 (1871)
|+.-+.++|.=.|.-.|.-|+++.+.- -... .+.|.+++.|||+.||++|+-|...+|....|-+.+++..
T Consensus 109 l~kDl~~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~ 180 (355)
T 3tjz_B 109 LTKDMTGKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNE 180 (355)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHH
T ss_pred HHhhcCCCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 666789999999999999999974211 1223 4889999999999999999999887777777766554443
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=90.91 E-value=1.7 Score=52.51 Aligned_cols=187 Identities=10% Similarity=0.023 Sum_probs=126.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCC--CCCChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH---hcccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST--KRI--APGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi--~~~dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~g---Lr~~F 360 (1871)
-+..-|.+..=..|..|.-.|..|... +.. .=.+.| .+..|-++| ...+..+...|+.++..|+.+ .+..+
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i 209 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 209 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence 466667777777888888888887642 111 101112 344555543 455678888999999999983 33333
Q ss_pred ccchhhhHHHHHHHhccCCH----HHHHHHHHHHHHHHHh--cCCC----h--hhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 361 SGSSRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLN----L--VDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~----~V~eAl~~aLda~~~~--~~~~----l--~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
.. ....+|++++-++..+. .|++.+..+|-.+..+ ++.. + ...++.+...|.+.++.++.++..-|.
T Consensus 210 ~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 210 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 35689999999987765 4888787888877652 0100 0 124577788889999999999888777
Q ss_pred HHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
.+-.. .......+. ...+|.|+.+|.+.++.+|+.|+.+|..|...-.+
T Consensus 289 nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 289 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 66432 222222222 24789999999999999999999999988875443
No 90
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.64 E-value=30 Score=44.52 Aligned_cols=370 Identities=10% Similarity=0.060 Sum_probs=187.6
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccch--hhhccchhhccc--cchhhhHHHHHHHHHHHh
Q 000200 637 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEA 712 (1871)
Q Consensus 637 ~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~~--~~~l~~lveKlg--D~K~r~~a~e~L~~~aE~ 712 (1871)
.....||++|. ..|..++......|..++... .-.+..+ .-.|+.+|+-|. +..++..|..+|..++-.
T Consensus 48 ~~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 48 PELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp CCHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 34666777763 345677777777787776421 1112222 124567776554 457888888888888742
Q ss_pred ---hchHh-----HHHHHHHhhhhcCChhhHHHHHHHHHHHH--HHhccCcc--chHhHHHHHh--hhcC----------
Q 000200 713 ---VGPGF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV--EDFGVSHL--KLKDLIDFCK--DTGL---------- 768 (1871)
Q Consensus 713 ---~~~~~-----V~~~l~~~~~~~KnPKv~~e~l~wl~~ai--~eFG~~~~--~~K~li~~~k--~~~l---------- 768 (1871)
..-.. .+..++..+....++.++..+...|..+- .+.-..++ -+..|+..+. ..|.
T Consensus 121 ~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 11112 24456666555567766655443322221 11000000 1334555431 1111
Q ss_pred -CCccHHHHHHHHHHHHHHHhhhCchhHhhh---hcchHHHHHHHHHHHhcCCCCCCCC--CccccccccccCCCCCCCC
Q 000200 769 -QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVV--PKKTVRASESTSSVSSGGS 842 (1871)
Q Consensus 769 -~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l---~dlkpall~~ie~EF~K~~~~~~p~--p~R~~r~~~~~~~~~~~~~ 842 (1871)
.+.++.|+..|..+|..|-.. ++.-+..+ +++-++|+..|....++........ -....+.=... ..
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~------~~ 273 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ------VH 273 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT------HH
T ss_pred cccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc------cc
Confidence 234679999999888877431 22223322 4566788888876654431100000 00000000000 00
Q ss_pred CCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCcc-----chHHHHhhhccc-hhHhHHHHHH
Q 000200 843 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-----ELFGGLRGRLYD-SNKNLVMATL 916 (1871)
Q Consensus 843 d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~g-----eL~~aLk~rl~D-sNk~lv~~al 916 (1871)
...|..+ . +.....+ +.. .+. --++.++. +.++.|-.-|.+ .|..+...|+
T Consensus 274 ~e~~~~~---~----~~~~~~~----------~~~-~~~-----~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 274 REIPQAE---R----YQEAAPN----------VAN-NTG-----TSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp HHSTTCC---C----------------------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred ccccchh---h----hhhhccc----------ccc-ccc-----ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 0000000 0 0000000 000 000 11233322 123444455543 4788888999
Q ss_pred HHHHHHHHhcChh---HHhhh--hhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh-----HHHHHHHhcccC-
Q 000200 917 ITLGAVASAMGPA---VEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV-----PYVTTALTDAKL- 985 (1871)
Q Consensus 917 ~ii~~lA~amG~~---~~k~~--k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~-----~~i~~~L~~~~~- 985 (1871)
..|..|+.+-++. +...+ ...+|.++..|......|+.+|..+|-..........++ +.+...|.++..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 9999998765432 22232 245899999999999999999999999887765554444 344555544321
Q ss_pred -----CcchHHHHHHHHHHHhccCCCC-c--chhhhhhHHhhhcCCC--CHHHHHHHHHHHHHHHHhc
Q 000200 986 -----GAEGRKDLFDWLSKQLTGLSGF-P--DAAHLLKPASIAMTDK--SSDVRKAAEACIVEILRAG 1043 (1871)
Q Consensus 986 -----~p~~r~e~l~wL~~~l~~~~~~-~--~~~~~~~p~~~~L~Dr--~~dVRkaA~~~L~~~m~~~ 1043 (1871)
+.+....++.-|..-....... . .....+.+++..|.++ ...++++|..+|-.++.+-
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 1223333433333222221111 1 1133566788888876 8999999999998776643
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=90.60 E-value=37 Score=46.71 Aligned_cols=157 Identities=17% Similarity=0.247 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhc-----------------cCCHHHH------HHHHHHHHHHH
Q 000200 338 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK-----------------EKKPTVA------ESLTQTLQAMH 394 (1871)
Q Consensus 338 Nv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklK-----------------EKK~~V~------eAl~~aLda~~ 394 (1871)
++.-...-++|+..+|+++|..|.+|+..+++.+++..+ .|-+.|| ..+..-+..+.
T Consensus 660 ~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 660 TVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456689999999999999999999999997532 2333222 22334444444
Q ss_pred HhcCCCh--------hhhHHHHHHHhhcCCchhHH-HHHHHHHHHHhhCC---hhHHHHhhhhhHHHHHhhhCC---CCH
Q 000200 395 KAGCLNL--------VDVVEDVKTSVKNKVPLVRS-LTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLND---GTP 459 (1871)
Q Consensus 395 ~~~~~~l--------~~~~e~i~~al~~KnP~vk~-etl~~L~r~l~~~~---~~~~~~~~k~~~~~l~k~l~D---s~~ 459 (1871)
.. +... ..+++-|+.--.+-+|..|. +.+..++-.+.+.. .+.+..++..+...-+..+++ ..|
T Consensus 740 ~~-~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 740 SK-ARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HH-CSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred hc-CCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 43 3332 23334444433455677775 55555555555433 222334445555555555555 789
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000200 460 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
+.|+.=+..+.++..+. +..++ .+.+..-+.+.+++
T Consensus 819 e~r~~ff~ll~~~~~~~----f~~~~-~~~~~~~~~~~~~~ 854 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKS----FAAFL-ELPPAAFKLFVDAI 854 (1023)
T ss_dssp HHHHHHHHHHHHHHHHC----THHHH-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC----hHHHH-cCCHHHHHHHHHHH
Confidence 99999999988887763 22233 37766656666654
No 92
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.31 E-value=1.5 Score=49.81 Aligned_cols=109 Identities=17% Similarity=0.317 Sum_probs=79.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhH
Q 000200 862 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 939 (1871)
Q Consensus 862 l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~ 939 (1871)
+.+.||-.=.| |=.+|+ . ++.+-.|.+++|++||...|.+++..||.++..+..=.|+.|... .+-|+.
T Consensus 21 ~~~~dw~~ile----icD~I~---~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWESILQ----ICDLIR---Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHHHHH----HHHHHH---T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHHHHH----HHHHHh---C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 45678975333 333332 1 234447999999999999999999999999999999999998764 555666
Q ss_pred HHHHHhcc-CchhHHHHHHHHHHHHHHhccchhhhHHHHHH
Q 000200 940 DILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 979 (1871)
Q Consensus 940 ~il~~l~D-~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~ 979 (1871)
.+...++. ....|++-+++.+..|.....-+.=++.|.+.
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~ 132 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDT 132 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 66555543 23579999999999999887544444444443
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.51 E-value=1.4 Score=55.31 Aligned_cols=150 Identities=11% Similarity=0.047 Sum_probs=102.5
Q ss_pred hhhhhhhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchh-h
Q 000200 288 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR-F 366 (1871)
Q Consensus 288 ~~f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~-~ 366 (1871)
+.+...|=+.+|..|=-|--.|-++++..--..|-. ...|. -+|++++..||- .+|+-|+. .
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYVSDq 239 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFVDDR 239 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCSSSS
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccccCe
Confidence 367778899999999998888887765322111111 22333 666777766653 56777754 2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhh
Q 000200 367 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 446 (1871)
Q Consensus 367 ~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~ 446 (1871)
++ +-|||.+.++|-++ .+-... -+++..+...+.+...++|-..+.=|... .+.+.. +..+
T Consensus 240 VV-----------APVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~V 300 (800)
T 3oc3_A 240 TV-----------APVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGL 300 (800)
T ss_dssp CB-----------CHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHH
T ss_pred ee-----------eehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHH
Confidence 33 34899999999999 551122 35555555666888899998777666544 121111 4778
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 447 VPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 447 ~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+++++.+|.|.+-+||..|+++|-.+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999988776
No 94
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.83 E-value=7.1 Score=47.14 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=126.3
Q ss_pred CCccccCCcccccCCCCchhhhhhhhccChHHHHHHHHHHHHhhh-cCCCCCCChHHHHHHHHHHhccccHHHHHHHHHH
Q 000200 270 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 348 (1871)
Q Consensus 270 iDp~dl~~~vdIl~klpk~~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~ 348 (1871)
..||.-.|...|+.... .|.+-= ..=+-+++++..+.-+.. -..+..-.-..++-.+-|++.-.|..+-.+.-=.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~~~--~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNETP--INPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTSSS--CCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcCCC--CcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 45676566555554321 232210 122234678888766443 2222222345777778888887777666666666
Q ss_pred HHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 349 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 349 i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
+..+++- ..-+-++.+.+..-+.++.+-+|..+..+|-.+... .-++++...+..++.|++|-||..++.-..
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6666665 344669999999999999999998877777777543 346777788889999999999999999888
Q ss_pred HHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHH
Q 000200 429 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~l 472 (1871)
+.+...+. +++.++..+..+++|+++-|--.|..+|-.+
T Consensus 165 kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 165 HLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 88865422 2467899999999999999986555544444
No 95
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=88.47 E-value=4 Score=51.07 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=123.1
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhhc--CCCCC--CChHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH---hcccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAST--KRIAP--GDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARG---LRTHF 360 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~~--pKi~~--~dy~eL~~~Lkk~l-~DsNv~vv~~A~~~i~~lA~g---Lr~~F 360 (1871)
-+..-|.+..=.-|..|.-.|..|... +.... .+. ..+..|-.+| ...+..+...|+.++..|+.+ .+..+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 366666666666677777777777532 11100 111 2344555554 456788899999999999983 33444
Q ss_pred ccchhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHh--cCCC-hh-----hhHHHHHHHhhcCCchhHHHHHHHHH
Q 000200 361 SGSSRFLLPVLLEKLKEKKPT----VAESLTQTLQAMHKA--GCLN-LV-----DVVEDVKTSVKNKVPLVRSLTLNWVT 428 (1871)
Q Consensus 361 ~~y~~~~~~~lLeklKEKK~~----V~eAl~~aLda~~~~--~~~~-l~-----~~~e~i~~al~~KnP~vk~etl~~L~ 428 (1871)
.. ....+|++++-+...+.. |++.+..+|-.+..+ ++.. -. ..++.+...|.+.++.++.++..-|.
T Consensus 326 ~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 21 256899999999887764 888788888877652 1100 11 23566778889999999999888777
Q ss_pred HHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHH
Q 000200 429 FCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 429 r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~ 475 (1871)
.+-.. .......+. ...+|.|+.+|...++.+|+.|+.+|..|...
T Consensus 405 nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 405 NLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 66532 222222222 24789999999999999999999999888754
No 96
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.31 E-value=0.53 Score=54.03 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=106.5
Q ss_pred HHhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcch
Q 000200 723 YKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 802 (1871)
Q Consensus 723 ~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlk 802 (1871)
+..+..+.+|.|+..+...+ + ...+..+ +.+.|+.||.++..-|. .+.|..++.|..
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l------------~----~~~l~~L-~~D~~~~VR~~aA~~L~------~~~L~~ll~D~d 111 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS------------P----VEALTPL-IRDSDEVVRRAVAYRLP------REQLSALMFDED 111 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------C----GGGGGGG-TTCSSHHHHHHHHTTSC------SGGGGGTTTCSC
T ss_pred HHHHhcCCCHHHHHHHHHhC------------C----HHHHHHH-ccCcCHHHHHHHHHHCC------HHHHHHHHcCCC
Confidence 44445788999998877643 1 1224556 89999999999986421 233344444433
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHH-HHhhcCCCChHHHHHHHHHHHHHH
Q 000200 803 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPT-LVKSLESPDWKVRLESIEAVNKIL 881 (1871)
Q Consensus 803 pall~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~-l~~~l~d~~WK~RkEaLe~v~~il 881 (1871)
+......=.. ++.+ +..-++|++|.+|.++...+
T Consensus 112 ~~VR~~aA~~-----------------------------------------l~~~~L~~L~~D~d~~VR~~aA~~l---- 146 (244)
T 1lrv_A 112 REVRITVADR-----------------------------------------LPLEQLEQMAADRDYLVRAYVVQRI---- 146 (244)
T ss_dssp HHHHHHHHHH-----------------------------------------SCTGGGGGGTTCSSHHHHHHHHHHS----
T ss_pred HHHHHHHHHh-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhc----
Confidence 3222221111 1111 22336788888888887631
Q ss_pred HHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHHH
Q 000200 882 EEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 961 (1871)
Q Consensus 882 ~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~ald 961 (1871)
. .+ .|..-++|.|..|-..++.- ++. +-+...++|....||.+++..+
T Consensus 147 -------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ll~~ll~D~d~~VR~aaa~~l- 194 (244)
T 1lrv_A 147 -------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------ESLGLMTQDPEPEVRRIVASRL- 194 (244)
T ss_dssp -------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------GGGGGSTTCSSHHHHHHHHHHC-
T ss_pred -------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------HHHHHHHcCCCHHHHHHHHHhC-
Confidence 1 12 23344578888777666542 221 2233556888888888888763
Q ss_pred HHHHhccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCCCcchhhhhhHHhhhcCCCCHHHHHHHHHHHH
Q 000200 962 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1037 (1871)
Q Consensus 962 a~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~~~~~~~~~~p~~~~L~Dr~~dVRkaA~~~L~ 1037 (1871)
+. +.+...+.++ +++.|..+..-+ . .+.+..|.|.+..||.+|.+.|+
T Consensus 195 ------~~----~~L~~Ll~D~--d~~VR~~aa~~l----~------------~~~L~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 ------RG----DDLLELLHDP--DWTVRLAAVEHA----S------------LEALRELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------CG----GGGGGGGGCS--SHHHHHHHHHHS----C------------HHHHHHCCCCCHHHHHHHHCCC-
T ss_pred ------CH----HHHHHHHcCC--CHHHHHHHHHcC----C------------HHHHHHccCCCHHHHHHHHHHhC
Confidence 21 2333334544 467777766542 1 24444568888888888876654
No 97
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=88.30 E-value=5.9 Score=47.76 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhhcC---CCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----hccccccchhhhHHHHHH
Q 000200 301 ERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHFSGSSRFLLPVLLE 373 (1871)
Q Consensus 301 eRkEaLe~l~~l~~~p---Ki~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g----Lr~~F~~y~~~~~~~lLe 373 (1871)
-|.+|...|..|+... |..-..++..+..|-.+|...|..+...|+.+|..|+.+ -|..+. -...+|++++
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~--~~G~Ip~Lv~ 177 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR--EVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH--HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH--HCCCHHHHHH
Confidence 4677777777776322 111112466788888888878889999999999999875 122222 1356899999
Q ss_pred Hh-ccCCHHHHHHHHHHHHHHHHhcCCC----h---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhH
Q 000200 374 KL-KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAA 438 (1871)
Q Consensus 374 kl-KEKK~~V~eAl~~aLda~~~~~~~~----l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~ 438 (1871)
-+ +.....+++.+..||-.+... |.. + ...++.+...|.+..+. ++.+++.. -+.+.. .....
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a-L~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI-LRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH-HHHHHHHHTTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH-HHHHHhhccCCHHH
Confidence 75 556788888888888777642 211 1 13456667777777663 66655543 344443 22222
Q ss_pred HHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 439 VLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 439 ~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
...+. ...+|.++.+|.+.+.+|++.|+.+|..+.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22222 237899999999999999999999988775
No 98
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=87.08 E-value=27 Score=40.24 Aligned_cols=127 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK 379 (1871)
.+|.+.|.++..++-+. .+.=|.+++..+-....|++..|-...+.-|+..++. + ..++..+++.+..-+.|.-
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 69999999999864321 2345888999998887799999888888888777632 2 2478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cCCC------hh-------hhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 380 PTVAESLTQTLQAMHKA----GCLN------LV-------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~----~~~~------l~-------~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
++|+..+..|...++.. -|.+ .+ .+-+.|+.-+.+.|..+|..+++|+.+++-
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 99999888888777653 1111 12 233556667789999999999999999984
No 99
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=86.42 E-value=2.4 Score=44.88 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 14 l~~~dw~~~leicD~I~~---~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT---D----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 345677554444443322 1 11245889999999999999999999999999999999999766 47788888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...++.| -..|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777764 568999999999999875
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=86.26 E-value=7.7 Score=48.49 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHHHHHh-
Q 000200 302 RKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL- 375 (1871)
Q Consensus 302 RkEaLe~l~~l~~~pK---i~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~lLekl- 375 (1871)
+.+|...|..|+.... ..-..++..+..|-.+|...|..+...|+.+|..|+.+-....... -...+|++++-+
T Consensus 217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl 296 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 6677777777764321 1001246678888888888888999999999999986411111111 135689999975
Q ss_pred ccCCHHHHHHHHHHHHHHHHhcCC----Ch---hhhHHHHHHHhhcCCch----hHHHHHHHHHHHHhh---CChhHHHH
Q 000200 376 KEKKPTVAESLTQTLQAMHKAGCL----NL---VDVVEDVKTSVKNKVPL----VRSLTLNWVTFCIET---SSKAAVLK 441 (1871)
Q Consensus 376 KEKK~~V~eAl~~aLda~~~~~~~----~l---~~~~e~i~~al~~KnP~----vk~etl~~L~r~l~~---~~~~~~~~ 441 (1871)
......+++.+..||-.+... |. .+ ...++.+...|.+..+. ++.++...| +.+.. ........
T Consensus 297 ~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL-~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 297 EVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL-RNVSSLIATNEDHRQI 374 (458)
T ss_dssp TCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHH-HHHHhcccCCHHHHHH
Confidence 446788888888888877653 21 11 13455666777776653 676655443 44443 22222222
Q ss_pred hh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHH
Q 000200 442 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 473 (1871)
Q Consensus 442 ~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm 473 (1871)
+. ...+|.++.+|.+.+.+|++.|+.+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 247899999999999999999999998875
No 101
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.98 E-value=3.2 Score=44.03 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=74.0
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+ -+. +..=.+.+++|+++|...|.+++..|+..++.+.+-=|..|... .+-++..|
T Consensus 24 l~~~dw~~ileicD~I---~~~----~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL 96 (149)
T 3g2s_A 24 NKELDWASINGFCEQL---NED----FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL 96 (149)
T ss_dssp CSSCCHHHHHHHHHHG---GGS----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH---HCC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 4557786433333332 112 22346899999999999999999999999999999999999765 56778888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...+++| -..|++-+.+.+..|...
T Consensus 97 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 97 IKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888764 468999999999999875
No 102
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=85.39 E-value=2.2 Score=44.73 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=72.3
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+ +-.+..=.+.+++|+|+|...|.+++..|+..++.+.+-=|..|...+ +-++..|
T Consensus 18 l~~~dw~~ileicD~I-------~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 18 NTAEDWGLILDICDKV-------GQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp SSSCCHHHHHHHHHHH-------TTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH-------HCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 5667786433333322 122333568999999999999999999999999999999999997553 5667776
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEKKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEKK~~V~eAl~~aLda~~~~ 396 (1871)
...++..-+.|++-+.+.+.+|...
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Confidence 6666666778999999999999764
No 103
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.13 E-value=26 Score=42.76 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 379 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK 379 (1871)
.+|.+.|.++.+|+=+. .+.-|.+++..|-....|.|+.|-.-.+..|+..++. . ..++..+++.+..-+.|.-
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999964221 2234778888888888899999999999999888863 2 2357788888888888999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 380 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~----~~--~~-----------l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
++|+..+..|...++.. -| -+ +..+-+.|+..+.+.|..||..+++|+.+++-
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 99999888888777632 01 11 22334567777889999999999999999984
No 104
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.00 E-value=1.4e+02 Score=41.60 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHhh---chHhHHHHHHHhhhh----------------------cCChh-hHHHHHH-HHHHHHHHh-
Q 000200 698 TRAHAMKCLTTFSEAV---GPGFIFERLYKIMKD----------------------HKNPK-VLSEGIL-WMVSAVEDF- 749 (1871)
Q Consensus 698 ~r~~a~e~L~~~aE~~---~~~~V~~~l~~~~~~----------------------~KnPK-v~~e~l~-wl~~ai~eF- 749 (1871)
.|....+++..+|... +..++...+...+.. ..+|. ...|+.. .+..+++.+
T Consensus 439 ~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~ 518 (1204)
T 3a6p_A 439 SRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMF 518 (1204)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6888888999888765 666666666554432 01121 1223322 222222322
Q ss_pred --cc-Cccc---hHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCCCCCCC
Q 000200 750 --GV-SHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 823 (1871)
Q Consensus 750 --G~-~~~~---~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~~~~p~ 823 (1871)
.- ..++ ...++..+.. +...+|.+|...+.++|++..|+.. -+.-+...|+.=|..+.+. ++.
T Consensus 519 ~~~e~~~l~~~~~~~Ll~~ll~--~~~~~p~l~~~~i~~l~~l~~~~~~--------~p~~L~~vL~~ll~~l~~~-~~~ 587 (1204)
T 3a6p_A 519 RTLNREEIPVNDGIELLQMVLN--FDTKDPLILSCVLTNVSALFPFVTY--------RPEFLPQVFSKLFSSVTFE-TVE 587 (1204)
T ss_dssp HHSCTTCCCHHHHHHHHHHHHH--CCCSCHHHHHHHHHHHHHHGGGGGT--------CGGGHHHHHHHHHHHHHCC-TTC
T ss_pred cccccccccHHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHHhc--------CchHHHHHHHHHHHhhccC-Ccc
Confidence 10 2222 2445555432 3457999999999999999888752 1222333334444443221 111
Q ss_pred CccccccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCCChHHHHHHHHHHHHHHHHcccCCCCCCccchHHHHhh-
Q 000200 824 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG- 902 (1871)
Q Consensus 824 p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~~WK~RkEaLe~v~~il~~ankrI~p~~~geL~~aLk~- 902 (1871)
..+.. + ++.+=.+|..|-.++..|+.++...+-|-. ..|...+..
T Consensus 588 ~~~~~------------------~---------------~~~~k~vr~~a~~al~~L~~~~~~~L~p~~-~~i~~~~~~~ 633 (1204)
T 3a6p_A 588 ESKAP------------------R---------------TRAVRNVRRHACSSIIKMCRDYPQLVLPNF-DMLYNHVKQL 633 (1204)
T ss_dssp STTSC------------------C---------------CHHHHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHH
T ss_pred ccccc------------------c---------------cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 11110 0 001224688888999999988756666653 666665544
Q ss_pred ----h-ccchhHhHHHHHHHHHHHHHHhcChhH--HhhhhhhhHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhh
Q 000200 903 ----R-LYDSNKNLVMATLITLGAVASAMGPAV--EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 973 (1871)
Q Consensus 903 ----r-l~DsNk~lv~~al~ii~~lA~amG~~~--~k~~k~l~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~ 973 (1871)
. +.+.++.....|+-++ |..+++.- ..|...+++++++.+.+.. ++. +......++..+|++..-
T Consensus 634 l~~~~~l~~~e~~~L~eal~~i---a~~~~~~~~~~~~l~~ll~P~~~~w~~~~--~~~-~~s~~~~f~~~~G~~~~~ 705 (1204)
T 3a6p_A 634 LSNELLLTQMEKCALMEALVLI---SNQFKNYERQKVFLEELMAPVASIWLSQD--MHR-VLSDVDAFIAYVGTDQKS 705 (1204)
T ss_dssp HHSTTTSCHHHHHHHHHHHHHH---HGGGCCHHHHHHHHHHHHHHHHHHHSCHH--HHH-HHHCHHHHHHHHTSSCC-
T ss_pred HhCcccccHHHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHHHHHHHccHH--HHH-hhcCHHHHHHHhCCCCCc
Confidence 4 7788888888887665 65566532 3467889999999997533 444 455556777778877653
No 105
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.00 E-value=2.5 Score=45.86 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=74.7
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..-.+.+++|+++|...|.+|+..|+..++.+.+-=|+.|... .+-++..|
T Consensus 26 l~~~Dw~~ileicD~I~~---~----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK---E----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc---C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456778654444333322 1 22356899999999999999999999999999999999999865 45678888
Q ss_pred HHHhccC------CHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKEK------KPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKEK------K~~V~eAl~~aLda~~~~ 396 (1871)
...++.| -..|++-+.+.+..|...
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8777654 379999999999999876
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.51 E-value=2.1 Score=56.13 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=67.3
Q ss_pred hhhhhhccChHHHHHHHHHHHHhhhcCCCCC-CChHHHHH-HHHHHhccccHHHHHHHHHHHHHHHHHhccccccc--hh
Q 000200 290 FWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCR-TLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SR 365 (1871)
Q Consensus 290 f~~~l~s~KWkeRkEaLe~l~~l~~~pKi~~-~dy~eL~~-~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~ 365 (1871)
+.++|.|+...+|..|+..|..|+.++.-.. -.+..++. .|..++.|+|..|+..|+.+++.|+..-|.++..| ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 6788999999999999999999886544222 12333454 56888899999999999999999998887776555 45
Q ss_pred hhHHHHHHHhc
Q 000200 366 FLLPVLLEKLK 376 (1871)
Q Consensus 366 ~~~~~lLeklK 376 (1871)
.++++|+.-|+
T Consensus 119 ~il~~L~~~l~ 129 (684)
T 4gmo_A 119 DVLTAIEHAAK 129 (684)
T ss_dssp THHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 57787776654
No 107
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=82.85 E-value=1.4e+02 Score=39.67 Aligned_cols=301 Identities=11% Similarity=0.099 Sum_probs=162.3
Q ss_pred hHhHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch
Q 000200 715 PGFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD 793 (1871)
Q Consensus 715 ~~~V~~~l~~~~~~-~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~ 793 (1871)
-.||.++.++.+.. .|+..++.-++..|+.+-..-+.....+..+++.+++. |.+.+...|.-|+..| .|.-+.+.
T Consensus 290 R~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgL--aYLSl~~~ 366 (778)
T 3opb_A 290 RTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEAL--AYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHH--HHHTTSSH
T ss_pred HHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHH--HHHhCCHH
Confidence 45555555554432 46778888888888887665555667888899999997 9988777788888877 46678999
Q ss_pred hHhhhhcchHHHHHHHHHHHhcCCCCCCCCCcccc--------ccccccCCCCCCCCCCCCccccccCCcHHHHhhcCCC
Q 000200 794 IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV--------RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP 865 (1871)
Q Consensus 794 l~~~l~dlkpall~~ie~EF~K~~~~~~p~p~R~~--------r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l~d~ 865 (1871)
+|..|.+-...+...++- . +.+...+ . .-++ ...+...........+.+=.+-+ .|. ..-.|.
T Consensus 367 VKe~L~~d~~~L~~Lv~l-l-k~~~d~s-~-~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~--~p~---~~~~d~ 437 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTM-I-KSQKMTH-C-LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX--XPA---ADKVGA 437 (778)
T ss_dssp HHHHHHHCHHHHHHHHHH-H-TTTCCTT-H-HHHHHHHHHHTTCCCCCCCCCCC-----------------------CCT
T ss_pred HHHHHHhCHHHHHHHHHH-H-hCCCCch-H-HHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc--Ccc---cCcccc
Confidence 999885444433333221 1 1111000 0 0000 00000000000000000000000 010 001111
Q ss_pred ChHHHHHHHHH-HHHHHHHcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhh--hhhhhHHHH
Q 000200 866 DWKVRLESIEA-VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSDIL 942 (1871)
Q Consensus 866 ~WK~RkEaLe~-v~~il~~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~--~k~l~~~il 942 (1871)
.+ ...+.+.+ ..+++- . ...+..|...++..+.++..+|+.++..|+.- +..+.. ..+.+++++
T Consensus 438 ~~-~~~~~v~~~~~~~l~-------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL 504 (778)
T 3opb_A 438 EK-AAKEDILLFNEKYIL-------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIIL 504 (778)
T ss_dssp HH-HHHHHHHHHHHHHTT-------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHH
T ss_pred cc-cchHHHHHHHHHHHH-------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHH
Confidence 12 22222222 222222 2 23788888888888889999999999999744 444433 236789999
Q ss_pred HHhccCchh---HHHHHHHHHHHHHHhccchh---------hhHHHHHHHhc-ccCC----------c-chHHHHHHHHH
Q 000200 943 KCLGDNKKH---MRECTLTVLDAWLAAVHLDK---------MVPYVTTALTD-AKLG----------A-EGRKDLFDWLS 998 (1871)
Q Consensus 943 ~~l~D~K~~---vR~aa~~alda~~~~~gl~~---------~~~~i~~~L~~-~~~~----------p-~~r~e~l~wL~ 998 (1871)
..|.+.... +|..|..||-...-.+.-.. .++.+..-|.. +... + ..+.|.+.=|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 999888655 89999999988886553222 23344444431 1100 0 11556655544
Q ss_pred HHhccCCCC--cc-----hh--hhhhHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000200 999 KQLTGLSGF--PD-----AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1041 (1871)
Q Consensus 999 ~~l~~~~~~--~~-----~~--~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~ 1041 (1871)
.|...+.. .+ .. ..+..+...|.+-+..||++|.+++--++.
T Consensus 585 -NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 585 -NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp -HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred -HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 34444321 11 11 123446667777788999999988887775
No 108
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=82.33 E-value=4.9 Score=43.26 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+.. . +..=.+.+++|+++|...|.+++..|+..++.+.+--|+.|...+ +-++..|
T Consensus 28 ~~~~Dw~~~leicD~I~~---~----~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGS---T----PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 456788765544444322 1 223468999999999999999999999999999999999998553 4477777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHHHHh
Q 000200 372 LEKLKE-KKPTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 372 LeklKE-KK~~V~eAl~~aLda~~~~ 396 (1871)
...++. .-+.|++-+.+.+..|...
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 666653 2368999999999999875
No 109
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=81.56 E-value=13 Score=49.23 Aligned_cols=171 Identities=11% Similarity=0.122 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhh--hcCCCCCCCh--HHHHHHHHHHhc-cccH-------------HHHHHHHHHHHHHHHH-------
Q 000200 301 ERKDAVAELTKLA--STKRIAPGDF--TEVCRTLKKLIT-DVNI-------------AVAVEAIQAIGNLARG------- 355 (1871)
Q Consensus 301 eRkEaLe~l~~l~--~~pKi~~~dy--~eL~~~Lkk~l~-DsNv-------------~vv~~A~~~i~~lA~g------- 355 (1871)
-|..|..+|..|+ .+|.+.-+.| -+.++-|..+|. |.+. .-...|+.+|+.||..
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 4788888888754 3455432112 267888888887 4443 2366899999999985
Q ss_pred hccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh-hhh-----------HHHHHHHhhcCCchhHHHH
Q 000200 356 LRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-VDV-----------VEDVKTSVKNKVPLVRSLT 423 (1871)
Q Consensus 356 Lr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l-~~~-----------~e~i~~al~~KnP~vk~et 423 (1871)
+|...-++ ...+|.+.+-+.+-+..|+.|+.+++..++.. ...+ .++ ++-+...+...++.+|..+
T Consensus 597 ~r~~Ii~~-~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 597 VCKHIVST-KVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHHS-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 34433221 24789999999999999999999999999864 2222 122 3456677889999999999
Q ss_pred HHHHHHHHhhCChhHHHHhhh--hhHHHHHhhhCC--CCHHHHHHHHHHHHHHHH
Q 000200 424 LNWVTFCIETSSKAAVLKVHK--DYVPICMECLND--GTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 424 l~~L~r~l~~~~~~~~~~~~k--~~~~~l~k~l~D--s~~~VR~aA~~~l~~lmk 474 (1871)
...|+.+-...+ .....++. ..+..++..+.| .++++|..+..++--+..
T Consensus 675 agALAnLts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 675 AAIFANIATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 977776544332 22222222 477888999999 899999999999999886
No 110
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.78 E-value=11 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=26.3
Q ss_pred hHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhCh
Q 000200 446 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 446 ~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge 478 (1871)
++..|...+.|++..||.+|..+||.++.--.+
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 456777888999999999999999987754333
No 111
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=79.49 E-value=12 Score=46.33 Aligned_cols=178 Identities=11% Similarity=0.055 Sum_probs=109.2
Q ss_pred hhhhhhhccChHHHHHHHHHHHHhhh-cCCCC-C-CChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---hcccccc
Q 000200 289 GFWEGVKATKWSERKDAVAELTKLAS-TKRIA-P-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG---LRTHFSG 362 (1871)
Q Consensus 289 ~f~~~l~s~KWkeRkEaLe~l~~l~~-~pKi~-~-~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~g---Lr~~F~~ 362 (1871)
.+...|.+..+..|.+|...|..++. ++... . .+. ..+..|-..|.+.|..+...|+.++..|+.+ .+..+.
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~- 83 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR- 83 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH-
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 57788899999999999999999874 32221 0 111 2356677777778889999999999999974 222221
Q ss_pred chhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhcCCChh-----hhHHHHHHHhh--------cCCchhHH-------
Q 000200 363 SSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDVKTSVK--------NKVPLVRS------- 421 (1871)
Q Consensus 363 y~~~~~~~lLeklK-EKK~~V~eAl~~aLda~~~~~~~~l~-----~~~e~i~~al~--------~KnP~vk~------- 421 (1871)
....+|++++-++ .....+++.+..||-.++.. -... ..++.+...|. +.++..|.
T Consensus 84 -~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 84 -RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp -HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred -HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2367999999999 77889999999999888753 2222 23344555552 22222221
Q ss_pred HHHHHHHHHHhhCChhHHHHhhh--hhHHHHHhhhCC------CCHHHHHHHHHHHHHH
Q 000200 422 LTLNWVTFCIETSSKAAVLKVHK--DYVPICMECLND------GTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 422 etl~~L~r~l~~~~~~~~~~~~k--~~~~~l~k~l~D------s~~~VR~aA~~~l~~l 472 (1871)
....|.-+.|... +.....+.. ..+|.|+..|.+ .+..+.+.|..+|..+
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 1333444445433 222222332 567777777753 4555666666555544
No 112
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.14 E-value=4.7 Score=45.62 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=64.7
Q ss_pred chhhHHHHHHHHhhccCchhHHHHHHHHHHHHHhhCCC---ccChhHHHhhchhhhc-ccChhHHHHHHHHHHHHHHhhC
Q 000200 125 AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFD-HQDQNVRASSKGLTLELCRWIG 200 (1871)
Q Consensus 125 ~~~~v~e~ll~~~~~K~PKvvaaai~~l~~~l~~FG~~---vv~~K~ilk~l~~lf~-~~dk~VR~ea~~L~vely~wlG 200 (1871)
++..++.+|.+-+.++||+++.-|+..|...+++=|.. .|.-+.+++.|.++++ ..+..||+....|+.+-+.++.
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 35688899999999999999999999999999998874 3566788888887765 4678999999999988887775
Q ss_pred C
Q 000200 201 K 201 (1871)
Q Consensus 201 ~ 201 (1871)
.
T Consensus 122 ~ 122 (226)
T 3zyq_A 122 N 122 (226)
T ss_dssp T
T ss_pred C
Confidence 4
No 113
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=77.05 E-value=4.4 Score=43.28 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=71.2
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccc--hhhhHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPV 370 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y--~~~~~~~ 370 (1871)
+.+.+|.-=.|.-|.+.. . +..-.|.+++|+++|. ..|.+++..|+..++.+.+-=|+.|... .+-++..
T Consensus 29 l~~~Dw~~~leicD~I~~---~----~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e 101 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE---T----EEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVES 101 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH---S----SSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC---C----CccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHH
Confidence 445678765544443321 1 2345789999999998 7999999999999999999999999865 3447776
Q ss_pred -HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000200 371 -LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 371 -lLeklKEKK---~~V~eAl~~aLda~~~~ 396 (1871)
|...+..|. ..|++-+.+.+..|...
T Consensus 102 ~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 102 VLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 555564332 37999999999999875
No 114
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.06 E-value=1.1e+02 Score=41.56 Aligned_cols=258 Identities=17% Similarity=0.112 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCch--hHhhhhcchHHHHHH
Q 000200 731 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFLADVKPALLSA 808 (1871)
Q Consensus 731 nPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~--l~~~l~dlkpall~~ 808 (1871)
++.++..++.-|+-+. .|.. =..+++.++.. |.+.++.+|..|.--||-+|.--|+. +...+ +.
T Consensus 450 ~~~ir~gAaLGLGla~--~GS~---~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL--------~~ 515 (963)
T 4ady_A 450 VDVLLHGASLGIGLAA--MGSA---NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMF--------TY 515 (963)
T ss_dssp HHHHHHHHHHHHHHHS--TTCC---CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHH--------HH
T ss_pred cHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHH--------HH
Confidence 4777777666554432 2322 23567777777 87788889988888899988766632 22222 22
Q ss_pred HHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHhhc-CCCChHHHHHHHHHHHHHHHHcccC
Q 000200 809 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEEANKR 887 (1871)
Q Consensus 809 ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~~l-~d~~WK~RkEaLe~v~~il~~ankr 887 (1871)
+.+ . + ....| |...-+= |.-.+-+-+ .-+.+++.+ .+.+|-+|--|.-.+.=.. |
T Consensus 516 ~~e---~---~--~e~vr--R~aalgL-----Gll~~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAy--a--- 571 (963)
T 4ady_A 516 SQE---T---Q--HGNIT--RGLAVGL-----ALINYGRQE----LADDLITKMLASDESLLRYGGAFTIALAY--A--- 571 (963)
T ss_dssp HHH---C---S--CHHHH--HHHHHHH-----HHHTTTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHT--T---
T ss_pred Hhc---c---C--cHHHH--HHHHHHH-----HhhhCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--c---
Confidence 111 0 0 00111 1000000 000000001 123455554 4689999998876653211 1
Q ss_pred CCCCCccchHHHH-hhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhc-cCchhHHHHHHHHHHHHHH
Q 000200 888 IQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLA 965 (1871)
Q Consensus 888 I~p~~~geL~~aL-k~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~-D~K~~vR~aa~~alda~~~ 965 (1871)
..+. .+.++.| .-...|.+..|.+.|.--+|.|+ ||.+ -.++.+++.|. +..+.||-++.-||--...
T Consensus 572 -GTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 572 -GTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp -TSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred -CCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1111 2333323 33346777777777666565553 4432 23566666544 5779999999999988887
Q ss_pred hccchhhhHHHHHHHhcccCCcchHHHHHHHHHHHhccCCC--CcchhhhhhHHhhhcCC--CCHHHHHHHHHHHHH
Q 000200 966 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAMTD--KSSDVRKAAEACIVE 1038 (1871)
Q Consensus 966 ~~gl~~~~~~i~~~L~~~~~~p~~r~e~l~wL~~~l~~~~~--~~~~~~~~~p~~~~L~D--r~~dVRkaA~~~L~~ 1038 (1871)
.+|....++.+...+.++ +.++|+..+-=|..-..+..+ .+-+..++.-+.....| .++.+|=.+.-+.|.
T Consensus 642 Gn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp SSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 778777777555555443 578898888777666555443 23455666656666655 346677666655553
No 115
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=74.92 E-value=13 Score=46.05 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=93.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHh---ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChh--
Q 000200 328 RTLKKLITDVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV-- 402 (1871)
Q Consensus 328 ~~Lkk~l~DsNv~vv~~A~~~i~~lA~gL---r~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~-- 402 (1871)
..|-..|...|..+...|+.++..|+.+= +..+ .....+|.+++-++...+.+++.+..||-.+... .....
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i--~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~ 81 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQV--YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLE 81 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHH--HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHH--HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 34445555557788899999999998531 1112 1346799999999999999999999999888742 10111
Q ss_pred ----hhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh--------CC--------CCHHH
Q 000200 403 ----DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL--------ND--------GTPEV 461 (1871)
Q Consensus 403 ----~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l--------~D--------s~~~V 461 (1871)
..++.+...|. +.++.++.++..-|...-.. +. .-..+....+|.++.+| .+ .+++|
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 23466778888 88899998887666544433 21 11122347889999999 23 24556
Q ss_pred HHHHHHHHHHHHH
Q 000200 462 RDAAFSVLAAIAK 474 (1871)
Q Consensus 462 R~aA~~~l~~lmk 474 (1871)
+..|..+|..|..
T Consensus 160 ~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 160 FFNATGCLRNLSS 172 (457)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 6688877777654
No 116
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=73.58 E-value=17 Score=44.40 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCH
Q 000200 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1871)
..-++.+.++=+-++.....-|+++++.|+.+-.+.+..||.-...||...+... ..++..+++.+..+|+|.++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-----~el~~~~l~~L~~LL~d~d~ 114 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-----IELLLKLIANLNMLLRDENV 114 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCH
Confidence 3456667777775554323457899999999888999999999999999988643 22346678889999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000200 460 EVRDAAFSVLAAIAKS 475 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~ 475 (1871)
.|-+.+..|.+.++++
T Consensus 115 ~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 115 NVVKKAILTMTQLYKV 130 (386)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999865
No 117
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=73.21 E-value=35 Score=43.84 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=103.3
Q ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcc---ccccch--hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Q 000200 325 EVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRT---HFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 398 (1871)
Q Consensus 325 eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~---~F~~y~--~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~ 398 (1871)
..++.|-.++. -.|..+...|+-+|..|+.|-.. .+...+ ...+|.|++-+......|++++..||-.+...
T Consensus 308 ~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~-- 385 (584)
T 3l6x_A 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD-- 385 (584)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--
Confidence 45677778886 45889999999999999876321 122122 25599999999999999999999999999875
Q ss_pred CChhhh-----HHHHHHHhhcCC--------chhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCC--CHHHH
Q 000200 399 LNLVDV-----VEDVKTSVKNKV--------PLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVR 462 (1871)
Q Consensus 399 ~~l~~~-----~e~i~~al~~Kn--------P~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds--~~~VR 462 (1871)
....++ +..+...|.+-+ ..+...++.-|...+... ......+. ...+|.++.++.++ .+.++
T Consensus 386 ~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 386 ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred hhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 333333 345555565542 234444444444444332 22222222 34899999999886 89999
Q ss_pred HHHHHHHHHHHHHhChhHHHHHhh
Q 000200 463 DAAFSVLAAIAKSVGMRPLERSIE 486 (1871)
Q Consensus 463 ~aA~~~l~~lmk~~Ge~~l~~~l~ 486 (1871)
++|+.+|..+.. ++.+...+.
T Consensus 465 k~Aa~vL~nl~~---~~elr~~~k 485 (584)
T 3l6x_A 465 RAAALVLQTIWG---YKELRKPLE 485 (584)
T ss_dssp HHHHHHHHHHHT---SHHHHHHHH
T ss_pred HHHHHHHHHHHc---CHHHHHHHH
Confidence 999988887754 554544444
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=73.16 E-value=3e+02 Score=38.35 Aligned_cols=378 Identities=11% Similarity=0.025 Sum_probs=188.5
Q ss_pred cchhhccccchhhhHHHHHHHHHHHhhc-hH-------hH----HHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHhcc
Q 000200 687 LGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHKN---PKVLSEGILWMVSAVEDFGV 751 (1871)
Q Consensus 687 ~~lveKlgD~K~r~~a~e~L~~~aE~~~-~~-------~V----~~~l~~~~~~~Kn---PKv~~e~l~wl~~ai~eFG~ 751 (1871)
+.++.-+.+.++|..|.+||..++.... ++ ++ +.+++..+..... ..--.+.+.-+++++..+|-
T Consensus 252 ~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~ 331 (1204)
T 3a6p_A 252 EILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN 331 (1204)
T ss_dssp HHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3333445567788888888888776432 11 00 2244443211110 22234555566666666651
Q ss_pred -------------CccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchHHHHHHHHHHHhcCCC
Q 000200 752 -------------SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 818 (1871)
Q Consensus 752 -------------~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkpall~~ie~EF~K~~~ 818 (1871)
..-.+..+++++-.+ +++.+-.|-..+..+-..+.++........+.+.-+.++..+-..+.|+.+
T Consensus 332 ~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~y 410 (1204)
T 3a6p_A 332 QLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGF 410 (1204)
T ss_dssp HHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 223467889998887 888888888888877776666653222233344445555555555788866
Q ss_pred CCCCC-CccccccccccCCCCC--CC--------CCC------CCccccccCCcHHHHhh--------------------
Q 000200 819 EGTVV-PKKTVRASESTSSVSS--GG--------SDG------LPREDISGKFTPTLVKS-------------------- 861 (1871)
Q Consensus 819 ~~~p~-p~R~~r~~~~~~~~~~--~~--------~d~------lprvDIs~kit~~l~~~-------------------- 861 (1871)
..... |+...- ..+..+... .. .|. +-+.+....+-+-+...
T Consensus 411 p~~~~~~~~~~~-~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~ 489 (1204)
T 3a6p_A 411 PSKTDSPSCEYS-RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGE 489 (1204)
T ss_dssp SSCCSSTHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC----------------
T ss_pred ccccCCcchhhh-hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 21100 111000 000000000 00 000 00000110000101111
Q ss_pred -----cCCCChHHHHHHHHHHHHHHHHcccCC-CCCCccchHHHHhhhc---cchhHhHHHHHHHHHHHHHHhcChhHHh
Q 000200 862 -----LESPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEK 932 (1871)
Q Consensus 862 -----l~d~~WK~RkEaLe~v~~il~~ankrI-~p~~~geL~~aLk~rl---~DsNk~lv~~al~ii~~lA~amG~~~~k 932 (1871)
..+..|..+-..+-.++.++..-.+-. .+..-..+...|=.++ ...+..+...++.|++.+..-.... -.
T Consensus 490 ~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~ 568 (1204)
T 3a6p_A 490 GSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PE 568 (1204)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GG
T ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-ch
Confidence 123467665554444555554321111 1322112333333332 3456678889999999877654311 13
Q ss_pred hhhhhhHHHHHHhcc------------CchhHHHHHHHHHHHHHHhcc--chhhhHHHH----HHHhccc-CCcchHHHH
Q 000200 933 SSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--LDKMVPYVT----TALTDAK-LGAEGRKDL 993 (1871)
Q Consensus 933 ~~k~l~~~il~~l~D------------~K~~vR~aa~~alda~~~~~g--l~~~~~~i~----~~L~~~~-~~p~~r~e~ 993 (1871)
|...++.-|+..|.| .-+.||.+|..++..+...++ |-+.++.|. ..+.... ....-+-.+
T Consensus 569 ~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L 648 (1204)
T 3a6p_A 569 FLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCAL 648 (1204)
T ss_dssp GHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 444555566667666 345899999999999998884 344444433 4443333 333344444
Q ss_pred HHHHHHHhccC-CC---Ccc-hhhhhhHHhhhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhccCchhH--H-----
Q 000200 994 FDWLSKQLTGL-SG---FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A----- 1061 (1871)
Q Consensus 994 l~wL~~~l~~~-~~---~~~-~~~~~~p~~~~L~Dr~~dVRkaA~~~L~~~m~~~G~~~~~~~~~~Lk~~~~--~----- 1061 (1871)
...+.- +.+. +. ... +..++.|++..++ +++++.+.... ..++..+|-+.........++..+ .
T Consensus 649 ~eal~~-ia~~~~~~~~~~~~l~~ll~P~~~~w~--~~~~~~~~s~~-~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~ 724 (1204)
T 3a6p_A 649 MEALVL-ISNQFKNYERQKVFLEELMAPVASIWL--SQDMHRVLSDV-DAFIAYVGTDQKSCDPGLEDPCGLNRARMSFC 724 (1204)
T ss_dssp HHHHHH-HHGGGCCHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHCH-HHHHHHHTSSCC--CTTCCTHHHHHHHHHHHH
T ss_pred HHHHHH-HhccCCCHHHHHHHHHHHHHHHHHHHc--cHHHHHhhcCH-HHHHHHhCCCCCcccccccchhhhhHHHHHHH
Confidence 444431 1221 11 123 5677889888886 46677755544 577888887655444333333222 3
Q ss_pred --HHHHHHHhcc
Q 000200 1062 --LILERIKLNG 1071 (1871)
Q Consensus 1062 --~i~~~l~ka~ 1071 (1871)
.+...+++.+
T Consensus 725 ~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 725 VYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc
Confidence 5666777653
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.91 E-value=20 Score=41.38 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCH
Q 000200 380 PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 459 (1871)
Q Consensus 380 ~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~ 459 (1871)
..-.+.+.++-+-++.....-++++++.|++.-.+.+..+|.....|+...+...+ .++..+++.+..+++|.++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~-----~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV-----ELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCCH
Confidence 34456666666655443123467888889887777888999999999988885432 2346678899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000200 460 EVRDAAFSVLAAIAKSV 476 (1871)
Q Consensus 460 ~VR~aA~~~l~~lmk~~ 476 (1871)
.|-+.+..+.+.+++.+
T Consensus 105 ~V~K~~I~~~~~iY~~~ 121 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNG 121 (257)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999774
No 120
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=72.32 E-value=3e+02 Score=37.95 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhcc-----------------CCHH------HHHHHHHHHHHHHH
Q 000200 339 IAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKE-----------------KKPT------VAESLTQTLQAMHK 395 (1871)
Q Consensus 339 v~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKE-----------------KK~~------V~eAl~~aLda~~~ 395 (1871)
+.-...-++|...+|.++|..|.+++..+++.||+..+= |-+. |+.++...+..++.
T Consensus 687 i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~ 766 (1073)
T 3gjx_A 687 VKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVS 766 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556667889999999999999999999999976542 3222 23344445555554
Q ss_pred hcCCChh----h----hHHHHHHHhhcCCchhHH-HHHHHHHHHHhhCCh---hHHHHhhhhhHHHHHhhhC---CCCHH
Q 000200 396 AGCLNLV----D----VVEDVKTSVKNKVPLVRS-LTLNWVTFCIETSSK---AAVLKVHKDYVPICMECLN---DGTPE 460 (1871)
Q Consensus 396 ~~~~~l~----~----~~e~i~~al~~KnP~vk~-etl~~L~r~l~~~~~---~~~~~~~k~~~~~l~k~l~---Ds~~~ 460 (1871)
. +.... . +++-|+.--.+-+|..|. +.+..++-++.+... +.+..++..+...-+..++ +..|+
T Consensus 767 ~-~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe 845 (1073)
T 3gjx_A 767 R-SNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPE 845 (1073)
T ss_dssp T-CSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred c-CCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcH
Confidence 3 22222 2 333333323345677764 666676666655322 2233344444444444455 67899
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHhhcCCHHHHHHHHHHH
Q 000200 461 VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 500 (1871)
Q Consensus 461 VR~aA~~~l~~lmk~~Ge~~l~~~l~~Ld~~kk~KI~e~~ 500 (1871)
.|..=+..+.++..+. +. .+-.+.+..-+.+.+++
T Consensus 846 ~r~~ff~ll~~~~~~~----f~-~l~~l~~~~~~~~i~~i 880 (1073)
T 3gjx_A 846 HRTNFFLLLQAVNSHC----FP-AFLAIPPAQFKLVLDSI 880 (1073)
T ss_dssp HHHHHHHHHHHHHHHC----GG-GTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hH-HHHcCCHHHHHHHHHHH
Confidence 9999999888887762 22 22346776656666554
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=71.38 E-value=8.1 Score=44.24 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=83.0
Q ss_pred HhhhhcCChhhHHHHHHHHHHHHHHhccCccchHhHHHHHhhhcCCCccHHHHHHHHHHHHHHHhhhCchhHhhhhcchH
Q 000200 724 KIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 803 (1871)
Q Consensus 724 ~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K~li~~~k~~~l~~sN~~VR~aAi~Ll~~ly~~~G~~l~~~l~dlkp 803 (1871)
..+.+..++.|+..+..-+ . . +.+..+ +++.++.||.++..- ...+.+..++.|..+
T Consensus 104 ~~ll~D~d~~VR~~aA~~l-------~-----~----~~L~~L-~~D~d~~VR~~aA~~------l~~~~l~~l~~D~d~ 160 (244)
T 1lrv_A 104 SALMFDEDREVRITVADRL-------P-----L----EQLEQM-AADRDYLVRAYVVQR------IPPGRLFRFMRDEDR 160 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS-------C-----T----GGGGGG-TTCSSHHHHHHHHHH------SCGGGGGGTTTCSCH
T ss_pred HHHHcCCCHHHHHHHHHhC-------C-----H----HHHHHH-HcCCCHHHHHHHHHh------cCHHHHHHHHcCCCH
Confidence 3445778888887766521 1 1 234566 889999999988862 122334444455444
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccCCcHHHHh-hcCCCChHHHHHHHHHHHHHHH
Q 000200 804 ALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK-SLESPDWKVRLESIEAVNKILE 882 (1871)
Q Consensus 804 all~~ie~EF~K~~~~~~p~p~R~~r~~~~~~~~~~~~~d~lprvDIs~kit~~l~~-~l~d~~WK~RkEaLe~v~~il~ 882 (1871)
.....+=.. ++..++. -++|++|.+|.++.+.+
T Consensus 161 ~VR~~aa~~-----------------------------------------l~~~ll~~ll~D~d~~VR~aaa~~l----- 194 (244)
T 1lrv_A 161 QVRKLVAKR-----------------------------------------LPEESLGLMTQDPEPEVRRIVASRL----- 194 (244)
T ss_dssp HHHHHHHHH-----------------------------------------SCGGGGGGSTTCSSHHHHHHHHHHC-----
T ss_pred HHHHHHHHc-----------------------------------------CCHHHHHHHHcCCCHHHHHHHHHhC-----
Confidence 333222111 1223443 46999999999998753
Q ss_pred HcccCCCCCCccchHHHHhhhccchhHhHHHHHHHHHHHHHHhcChhHHhhhhhhhHHHHHHhccCchhHHHHHHHHH
Q 000200 883 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL 960 (1871)
Q Consensus 883 ~ankrI~p~~~geL~~aLk~rl~DsNk~lv~~al~ii~~lA~amG~~~~k~~k~l~~~il~~l~D~K~~vR~aa~~al 960 (1871)
+ .+ .|..-+.|.+-.|-..++. ++| ++.|..|.|....||.++.+.|
T Consensus 195 -~---------~~---~L~~Ll~D~d~~VR~~aa~-------~l~-----------~~~L~~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -R---------GD---DLLELLHDPDWTVRLAAVE-------HAS-----------LEALRELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp -C---------GG---GGGGGGGCSSHHHHHHHHH-------HSC-----------HHHHHHCCCCCHHHHHHHHCCC
T ss_pred -C---------HH---HHHHHHcCCCHHHHHHHHH-------cCC-----------HHHHHHccCCCHHHHHHHHHHh
Confidence 1 12 3444478888877766544 344 3566778999999999987654
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.96 E-value=15 Score=41.30 Aligned_cols=95 Identities=8% Similarity=0.072 Sum_probs=62.7
Q ss_pred hhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccch--hhhHHHH
Q 000200 294 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVL 371 (1871)
Q Consensus 294 l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~~l 371 (1871)
+.+.+|.-=.|.-|.+. . .+..=.|.+++|+++|...|.+++..|+..++.+.+.=|+.|...+ +-++..|
T Consensus 18 ~~~~dw~~~leicd~i~----~---~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 18 RLEPDWPSILLICDEIN----Q---KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp CSSCCHHHHHHHHHHHH----T---TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCcCHHHHHHHHHhhc----C---CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 34577876544333332 1 2334568999999999999999999999999999999999886542 2244443
Q ss_pred HHHhccC-CHHHHHHHHHHHHHHHH
Q 000200 372 LEKLKEK-KPTVAESLTQTLQAMHK 395 (1871)
Q Consensus 372 LeklKEK-K~~V~eAl~~aLda~~~ 395 (1871)
..-+++. -..|++-+.+-+..|..
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3333322 24566666666666654
No 123
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=66.61 E-value=52 Score=37.24 Aligned_cols=143 Identities=10% Similarity=-0.008 Sum_probs=93.4
Q ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHHHHh---ccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000200 327 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGL---RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1871)
Q Consensus 327 ~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gL---r~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l 401 (1871)
+..|-..|. |.+..+...|+.++..|+.+= +..+. ....+|++++-|+...+.|++.+..||-.+...+.-.=
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~--~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVN--QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH--HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHH--HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 444555665 444478888999999999763 22232 23557999999999999999999999999864200000
Q ss_pred h-----hhHHHHHHHhh-cCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhC-------C---------CCH
Q 000200 402 V-----DVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-------D---------GTP 459 (1871)
Q Consensus 402 ~-----~~~e~i~~al~-~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~-------D---------s~~ 459 (1871)
. .-++.+...|. ++.+.++.++..-|..+ ..... .-..+.+..+|.|+..+. | .++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~~-~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSNDK-LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSGG-GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcChh-hHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 1 13466777787 57889998876555433 32221 111233556777776542 2 377
Q ss_pred HHHHHHHHHHHHHH
Q 000200 460 EVRDAAFSVLAAIA 473 (1871)
Q Consensus 460 ~VR~aA~~~l~~lm 473 (1871)
+|+..|..||..+.
T Consensus 166 ~v~~na~~~L~nLs 179 (233)
T 3tt9_A 166 DIFYNVTGCLRNMS 179 (233)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887664
No 124
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=60.86 E-value=9.1 Score=40.70 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=68.5
Q ss_pred hhhccChHHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHhccccccch--hhhHH
Q 000200 293 GVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLP 369 (1871)
Q Consensus 293 ~l~s~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~-DsNv~vv~~A~~~i~~lA~gLr~~F~~y~--~~~~~ 369 (1871)
.+.+.+|.-=.|.-|.+ -+. +..=.|.+++|+|+|. ..|.+++..|+..++.+.+-=|..|...+ +-++.
T Consensus 28 ~l~~~Dw~~ileicD~I---n~~----~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~ 100 (152)
T 3rru_A 28 GVQTEDWGQFMHICDII---NTT----QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVK 100 (152)
T ss_dssp SCCSCCHHHHHHHHHHH---HHS----TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHT
T ss_pred CCCCccHHHHHHHHHHH---hCC----CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHH
Confidence 35567887433333322 222 2234689999999998 46999999999999999999999998763 35565
Q ss_pred H-HHHHhccCC---HHHHHHHHHHHHHHHHh
Q 000200 370 V-LLEKLKEKK---PTVAESLTQTLQAMHKA 396 (1871)
Q Consensus 370 ~-lLeklKEKK---~~V~eAl~~aLda~~~~ 396 (1871)
. |...++++- ..|++-+.+.+..|...
T Consensus 101 e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 101 ENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp TTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5 334444442 36999999999999864
No 125
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=59.66 E-value=58 Score=41.45 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=94.9
Q ss_pred CcHhHHHhhhhccHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHhcCCCCccc
Q 000200 602 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 681 (1871)
Q Consensus 602 ~~~~i~~~L~s~~WK~RL~a~e~l~~~v~~~~~~~~~~~~lvr~l~~~PgwkesNfqV~~~~leil~~la~~~~~fs~~~ 681 (1871)
+=+.+...|++..|-.|-.|.-.|.+.+..-..... + +...|- ...+.+++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG----------R---~~~~N~---DLAvRLLCV------------ 226 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD----------I---QIRVDS---KLFSKIYEI------------ 226 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC--------------C---CCCCCT---THHHHHHHH------------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc----------e---eccccH---HHHHHHHHH------------
Confidence 446677899999999999999999988877321100 0 011122 222222222
Q ss_pred hhhhccchhhcccc---chhhhHHHHHHHHHHHhhchH-hHHHHHHHhhhhcCChhhHHHHHHHHHHHHHHhccCccchH
Q 000200 682 VVLCLLGISERVAD---IKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 757 (1871)
Q Consensus 682 ~~~~l~~lveKlgD---~K~r~~a~e~L~~~aE~~~~~-~V~~~l~~~~~~~KnPKv~~e~l~wl~~ai~eFG~~~~~~K 757 (1871)
+++.-..|-++| +-+|+.+.++|-.+ --.+.+ -++.+++.. ..+..+.|+..+|.-+.-. .++=. ++.
T Consensus 227 --LALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~-l~~~~WEVRHGGLLGLKYL-~DLL~---~Ld 298 (800)
T 3oc3_A 227 --LVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGF-LDSGDWQVQFSGLIALGYL-KEFVE---DKD 298 (800)
T ss_dssp --HHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTG-GGCSCHHHHHHHHHHHHHT-GGGCC---CHH
T ss_pred --HHhccccccccCeeeeehHHHHHHHHHHH-HhCChhHHHHHHHHhh-cCCCCeeehhhhHHHHHHH-HHHHH---HHH
Confidence 222223333333 24789999988888 444433 356666654 3788999999999888777 44433 266
Q ss_pred hHHHHHhhhcCCCccHHHHHHHHHHHHHH
Q 000200 758 DLIDFCKDTGLQSSAAATRNATIKLLGAL 786 (1871)
Q Consensus 758 ~li~~~k~~~l~~sN~~VR~aAi~Ll~~l 786 (1871)
.+++.+.. ||++.+-.||..|...|.-+
T Consensus 299 ~Vv~aVL~-GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 299 GLCRKLVS-LLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp HHHHHHHH-HTTCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHh-hcCCcccHHHHHHHHHhhhh
Confidence 77777776 59999999999999887433
No 126
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=58.84 E-value=8.9 Score=40.22 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHh------------ccCCHHHHHHHHHHH
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL------------KEKKPTVAESLTQTL 390 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLekl------------KEKK~~V~eAl~~aL 390 (1871)
+.+++..|-++|.|.+.+++..|+++|..|++-=...|...++--... +..+ +|.-.+||+++.+++
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 578999999999999999999999999999976577787776555543 3332 233489999999999
Q ss_pred HHHHHh
Q 000200 391 QAMHKA 396 (1871)
Q Consensus 391 da~~~~ 396 (1871)
++++..
T Consensus 126 ~ll~d~ 131 (140)
T 1vdy_A 126 SAIFSE 131 (140)
T ss_dssp HHHTCC
T ss_pred HHHhCc
Confidence 999865
No 127
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=58.26 E-value=39 Score=42.18 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=94.5
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhh
Q 000200 325 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV 404 (1871)
Q Consensus 325 eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~ 404 (1871)
+-+.++-.++.|-.+.|-..|++-|-.||++ .|..-+.-.+..-|-.--+.-++++.++|-.++.. .....
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~t 135 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKGT 135 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHHH
Confidence 5677788888888888999999999999987 45666667777777788888999999999999986 22334
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhh-hHHHHHhhhCCCCH
Q 000200 405 VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICMECLNDGTP 459 (1871)
Q Consensus 405 ~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~-~~~~l~k~l~Ds~~ 459 (1871)
+..+...+.+-...+|..++.||...+...++..+.+.+.. ++..+.+.|.|-..
T Consensus 136 l~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 136 LGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 44444444445789999999999999988776665544443 55666777866544
No 128
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=57.25 E-value=17 Score=47.54 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhh-hhh-HHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000200 408 VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDY-VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLER 483 (1871)
Q Consensus 408 i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~-k~~-~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~ 483 (1871)
++.-|++.+|..|..++.=|+...+. +....-++ ..+ .+.+..+|.|++.+||.+|+.+|..|...-|++....
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 44557899999999888888877652 12111122 334 4556788999999999999999999998888875443
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=54.30 E-value=5.9e+02 Score=35.10 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=106.7
Q ss_pred HHHHHHHhcc--ccHHHHHHHHHHHHHHHHHhccccc-cchhhhHHHHHHHh-----ccCCHHHHHHHH---HHHHHHHH
Q 000200 327 CRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKL-----KEKKPTVAESLT---QTLQAMHK 395 (1871)
Q Consensus 327 ~~~Lkk~l~D--sNv~vv~~A~~~i~~lA~gLr~~F~-~y~~~~~~~lLekl-----KEKK~~V~eAl~---~aLda~~~ 395 (1871)
...|++.+.. -+-...-.++=++|.||.+|..... ++...+++.|+.-. ||.|+-|+..+. .-...|..
T Consensus 479 ~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~ 558 (1073)
T 3gjx_A 479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR 558 (1073)
T ss_dssp HHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH
Confidence 3444444432 2356666677788888877775444 66777777776443 455665554322 22223433
Q ss_pred hcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhH-------HHHhhhhhHHHHHhhhCCCCHHHHHHHHHH
Q 000200 396 AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAFSV 468 (1871)
Q Consensus 396 ~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~-------~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~ 468 (1871)
.+..-|..++..+.++|...+|.|..-+..=+...-+.+...- ..+++..++..+..+..+=+++-.-.=+++
T Consensus 559 ~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyea 638 (1073)
T 3gjx_A 559 AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEA 638 (1073)
T ss_dssp HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3222367778888899999999887755544444334333211 112345555666666777788888889999
Q ss_pred HHHHHHHhChhH-HHHHhhcCCHHHHHHHHHHHh
Q 000200 469 LAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMIA 501 (1871)
Q Consensus 469 l~~lmk~~Ge~~-l~~~l~~Ld~~kk~KI~e~~~ 501 (1871)
+|+++..+|... ...+++.|=+.--.+..+.++
T Consensus 639 v~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~ 672 (1073)
T 3gjx_A 639 VGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQ 672 (1073)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999644 556666655544455555554
No 130
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=49.52 E-value=1.2e+02 Score=33.50 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=70.4
Q ss_pred hhhhhhhccCh-HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhccccccchh
Q 000200 289 GFWEGVKATKW-SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSGSSR 365 (1871)
Q Consensus 289 ~f~~~l~s~KW-keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~--DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~ 365 (1871)
-||+++.+.=+ ..|.+||+.|. .+|.+.+= .--+++-+..-+. =.|..+...-++.+..|..-=.=...+|.+
T Consensus 11 ~yf~~It~a~~~~~r~~aL~sL~---~D~gL~~L-lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH 86 (196)
T 4atg_A 11 LYFDKILSMIKSDMKDIAIECLE---KESGLQQL-VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLH 86 (196)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHH---HCSSCTTT-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHh---cCCChhhh-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 35555533111 45888888754 45555441 0112222222221 115555555555555555444444789999
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHh
Q 000200 366 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 432 (1871)
Q Consensus 366 ~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~ 432 (1871)
.++|++|.++=-|+-.=. +|--.+. .++..|+.-..+.+|.++...+..+.+.|-
T Consensus 87 ~LipsvLtCll~k~l~~~-----~LRd~AA-------~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~ 141 (196)
T 4atg_A 87 QILPSLLTCVIGKSIVDD-----DVRKMSA-------DIVKYIYDTYSRSYKTLAPRVLKTLKGVWM 141 (196)
T ss_dssp HHHHHHHHHHHCTTCCCH-----HHHHHHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCHH-----HHHHHHH-------HHHHHHHHHhCccCchHHHHHHHHHHHHHc
Confidence 999999998754432111 2222222 345556666667788888777777777774
No 131
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=49.45 E-value=31 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHHH
Q 000200 456 DGTPEVRDAAFSVLAAI 472 (1871)
Q Consensus 456 Ds~~~VR~aA~~~l~~l 472 (1871)
|....||+.|.+++..|
T Consensus 112 d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 112 ALNKAVRETAHETISAI 128 (140)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34478999999988765
No 132
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=47.39 E-value=1.4e+02 Score=33.95 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH-HhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000200 323 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE-KLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1871)
Q Consensus 323 y~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLe-klKEKK~~V~eAl~~aLda~~~~~~~~l 401 (1871)
-.+++.....+..|..-.|-..|+..|+.+ . ....+++.|.+ --.|+-=-|++.+..++..++.. ..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~--~~p 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKK--IEY 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHh--cCH
Confidence 455666666666666678888888877665 2 22456666665 45678888999999999988752 345
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
+..++-+..-+++.|+-||.-+...+.- ....+. +......++|.+-.+.+|++.-||++-.-.|--+.|.--+ .+
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~--~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd-~V 213 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRI-WTNRPY--FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD-LV 213 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTT--TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHH-Hhccch--hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH-HH
Confidence 6677778888899999999766655421 111111 0111145789999999999999999999998888776543 34
Q ss_pred HHHhh
Q 000200 482 ERSIE 486 (1871)
Q Consensus 482 ~~~l~ 486 (1871)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45554
No 133
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=45.91 E-value=1.7e+02 Score=37.97 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=96.7
Q ss_pred hhhhhhhc-cChHHHHHHHHHHHHhhhcCCCCCCChHHH-HHHHHHHhc-c-ccHHHHHHHHHHHHHHHHHhccccccch
Q 000200 289 GFWEGVKA-TKWSERKDAVAELTKLASTKRIAPGDFTEV-CRTLKKLIT-D-VNIAVAVEAIQAIGNLARGLRTHFSGSS 364 (1871)
Q Consensus 289 ~f~~~l~s-~KWkeRkEaLe~l~~l~~~pKi~~~dy~eL-~~~Lkk~l~-D-sNv~vv~~A~~~i~~lA~gLr~~F~~y~ 364 (1871)
.+.+++.+ +=-.||++|+..|..+.+.-+ ...|.- ++.|-..|. | .++-+|..++.++-.+-.. .+...-.
T Consensus 25 ~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~--~~~~~~~ 99 (651)
T 3grl_A 25 KLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN--DEEEEVE 99 (651)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC--C------
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC--CCccccc
Confidence 34455665 567888899888888853222 222222 555666665 5 5777777776666655332 2222110
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhh
Q 000200 365 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 444 (1871)
Q Consensus 365 ~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k 444 (1871)
.. -.+....+. ..-.|.+.+. .+-+.-++..|+.....+|.-++..|...+.+.+...-..++.
T Consensus 100 ~~--------~~~~~~~~~---~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~ 163 (651)
T 3grl_A 100 EN--------STRQSEDLG---SQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163 (651)
T ss_dssp ----------------CHH---HHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cc--------ccccchHHH---HHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 00 000000000 1111233221 2445567778899999999999999998887664422222222
Q ss_pred --hhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 445 --DYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 445 --~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
.-++.++..|+|+...||+.|..+|..+.+
T Consensus 164 ~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 164 SPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp STTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 367899999999999999998888877765
No 134
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=41.24 E-value=54 Score=37.10 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=50.2
Q ss_pred hHHHHHHHhhcCCc--hhHHHHHHHHHHHHhhCChhHHHHhh-hhhHHHHHhhhCCCCHHHHHHHHHHHHHHHH
Q 000200 404 VVEDVKTSVKNKVP--LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAK 474 (1871)
Q Consensus 404 ~~e~i~~al~~KnP--~vk~etl~~L~r~l~~~~~~~~~~~~-k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk 474 (1871)
.++.+...|.+.+| +++.....+|...-...+ ..-..+. ...+|.++.+|...+++||+.|+.+|..|..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 35677788888888 888888877765333222 1111122 2468999999999999999999999887754
No 135
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.09 E-value=2.9e+02 Score=30.46 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHh----hcCC-chhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhh---CCCC
Q 000200 387 TQTLQAMHKAGCLNLVDVVEDVKTSV----KNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGT 458 (1871)
Q Consensus 387 ~~aLda~~~~~~~~l~~~~e~i~~al----~~Kn-P~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l---~Ds~ 458 (1871)
.+||..+-.- .+|..+++.+..+. .+.. ..-....+.-+.+++-..+.-.+.+.+..++|+++.|+ .-..
T Consensus 26 ~~aL~sL~~D--~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~ 103 (196)
T 4atg_A 26 DIAIECLEKE--SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVD 103 (196)
T ss_dssp HHHHHHHHHC--SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHhcC--CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCH
Confidence 3556666553 57777776555433 2221 11111222222333322232334467788999999887 1111
Q ss_pred HHHHHHHHHHHHHHHHHhCh
Q 000200 459 PEVRDAAFSVLAAIAKSVGM 478 (1871)
Q Consensus 459 ~~VR~aA~~~l~~lmk~~Ge 478 (1871)
..+||-|+..|+.+.+..|.
T Consensus 104 ~~LRd~AA~lL~~I~~~~~~ 123 (196)
T 4atg_A 104 DDVRKMSADIVKYIYDTYSR 123 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 28999999999999999995
No 136
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.38 E-value=8e+02 Score=29.59 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--------cccccchhhhHHHH
Q 000200 300 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--------THFSGSSRFLLPVL 371 (1871)
Q Consensus 300 keRkEaLe~l~~l~~~pKi~~~dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr--------~~F~~y~~~~~~~l 371 (1871)
-+|.-.++.+..|+..-++ +|..++..+..+-.+.+..+...++..++.|-.-+. ..|..|.+.++.++
T Consensus 106 ~dRa~LidD~~~La~ag~~---~~~~~l~l~~yL~~E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (419)
T 3rjo_A 106 NDRASLINNAFQLVSIGKL---SIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDL 182 (419)
T ss_dssp HHHHHHHHHHHHHHHHTSS---CHHHHHHHHGGGGGCCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 4666677777676655544 688888888776679999999999999998876664 34889999999999
Q ss_pred HHHhcc--CCHHHHHHHHHHHHHHHHhcCCChhhhHHHH
Q 000200 372 LEKLKE--KKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 408 (1871)
Q Consensus 372 LeklKE--KK~~V~eAl~~aLda~~~~~~~~l~~~~e~i 408 (1871)
+++++= .-.....-++..+-.++.. ....+|++..
T Consensus 183 ~~~lgw~~~~~~~~~~lR~~~l~~ac~--~g~~~c~~~A 219 (419)
T 3rjo_A 183 IDKQTWTDEGSVSERMLRSQLLLLACV--HNYQPCVQRA 219 (419)
T ss_dssp HHHCCSSCCSCHHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 999952 2223334455555555544 3556666543
No 137
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=27.93 E-value=69 Score=36.04 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhhchHhHHHHHHHhhhh------cCChhhHHHHHHHHHHHHH-HhccCc-cchHhHHHHHhhhcCCC
Q 000200 699 RAHAMKCLTTFSEAVGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVE-DFGVSH-LKLKDLIDFCKDTGLQS 770 (1871)
Q Consensus 699 r~~a~e~L~~~aE~~~~~~V~~~l~~~~~~------~KnPKv~~e~l~wl~~ai~-eFG~~~-~~~K~li~~~k~~~l~~ 770 (1871)
|......+..| +..|...++..+.....+ ......+.+|+.++..+++ ..|+.. +.-...|..+-.+ |.+
T Consensus 30 rt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~-L~s 107 (233)
T 2f31_A 30 NNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRA-MDP 107 (233)
T ss_dssp HHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTT-CCT
T ss_pred hcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHH-hCC
Confidence 33334445555 445555554444433211 1134678899999988876 667653 3445566777765 999
Q ss_pred ccHHHHHHHHHHHHHHHhhhC
Q 000200 771 SAAATRNATIKLLGALHKFVG 791 (1871)
Q Consensus 771 sN~~VR~aAi~Ll~~ly~~~G 791 (1871)
+|+.+|+.++.+|.++-.|-|
T Consensus 108 ~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 108 AVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp TSHHHHHHHHHHHHHHHTCSS
T ss_pred CCchHHHHHHHHHHHHHhCCC
Confidence 999999999999999888765
No 138
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=27.29 E-value=2.6e+02 Score=29.20 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=70.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCCh------hHHH-
Q 000200 368 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK------AAVL- 440 (1871)
Q Consensus 368 ~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~------~~~~- 440 (1871)
+...|+-|.|-|+++-....+.|..|+..+.-.-..+++-+...++.-.|.-|.-.+=.+...+++... ....
T Consensus 7 f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~ 86 (145)
T 3d9j_A 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAP 86 (145)
T ss_dssp HHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHH
Confidence 456788888888767777888888888763222345666666667666666665544444444444322 1222
Q ss_pred HhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHH--HHhChhHHHHHhh
Q 000200 441 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA--KSVGMRPLERSIE 486 (1871)
Q Consensus 441 ~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lm--k~~Ge~~l~~~l~ 486 (1871)
.+...+...+.... ...+++|..-...+.+-- .+++.+.+.++-+
T Consensus 87 ~F~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~ 133 (145)
T 3d9j_A 87 RFSNNIISTFQNLY-RCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLD 133 (145)
T ss_dssp HHHHHHHHHHHHHT-SSCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 22233333333333 345899999888888877 4566665554443
No 139
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.25 E-value=1.3e+02 Score=29.95 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=60.9
Q ss_pred HHHHHHHHhcChhHHhhhhhh--hHHHHHHhccCchhHHHHHHHHHHHHHHhccchhhhHHHHHHHhcccCCcchHHHHH
Q 000200 917 ITLGAVASAMGPAVEKSSKGV--LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLF 994 (1871)
Q Consensus 917 ~ii~~lA~amG~~~~k~~k~l--~~~il~~l~D~K~~vR~aa~~alda~~~~~gl~~~~~~i~~~L~~~~~~p~~r~e~l 994 (1871)
..+..|+.-+|..+++.++.| -..-+..+.+....+++.+.+.|..|....|-+.-+..+..+|..- +|.++.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~Lg~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G~~AT~~~L~~AL~~~-----~~~dva 93 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALNKS-----GLSDLA 93 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTTTCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHT-----TCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhCcCcHHHHHHHHHHHc-----CcHHHH
Confidence 345578899999888887754 4556777777777899999999999999999888899999999843 356666
Q ss_pred HHHHH
Q 000200 995 DWLSK 999 (1871)
Q Consensus 995 ~wL~~ 999 (1871)
.=|..
T Consensus 94 e~l~~ 98 (110)
T 1wxp_A 94 ESLTN 98 (110)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
No 140
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.98 E-value=3.1e+02 Score=27.92 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---
Q 000200 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK--- 413 (1871)
Q Consensus 341 vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK-~~V~eAl~~aLda~~~~~~~~l~~~~e---~i~~al~--- 413 (1871)
=+..|++|+..|.- +.| -..++--.+..-=|+| ...++++..-|..++..+.++-+++.. .+.+.+.
T Consensus 22 D~~Ea~~cl~eL~~---p~f---~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~ 95 (129)
T 2nsz_A 22 DISEAEHCLKELEV---PHF---HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDIN 95 (129)
T ss_dssp CHHHHHHHHHHHTC---GGG---HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---Ccc---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhh
Confidence 35788899988752 233 3344445555555666 378899999999888776678777754 3334333
Q ss_pred cCCchhHHHHHHHHHHHHhh
Q 000200 414 NKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~ 433 (1871)
--.|....-...|++||+..
T Consensus 96 lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 96 LDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp HHSTTHHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHHC
Confidence 46799999999999999974
No 141
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=22.47 E-value=5.6e+02 Score=32.10 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCh
Q 000200 322 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL 401 (1871)
Q Consensus 322 dy~eL~~~Lkk~l~DsNv~vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l 401 (1871)
+|..++..- -.+...=.+|++.|...- +.|-.....-+..+++-..|-=..||-.+...|-.++.. -.+
T Consensus 30 ~y~~Il~~~-----kg~~k~K~LaaQ~I~kff----k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i 98 (507)
T 3u0r_A 30 AYQVILDGV-----KGGTKEKRLAAQFIPKFF----KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL 98 (507)
T ss_dssp HHHHHHHGG-----GSCHHHHHHHHHHHHHHG----GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh
Confidence 465555432 234677778888777654 457788889999999999999999998777777776543 235
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
.-+.|-+...|+.--|.-...+-+=|...+...++.++..+...+.+ +++.||+-....|..-++-++...+
T Consensus 99 ~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~--------~~e~~Rer~lkFi~~kl~~l~~~~l 170 (507)
T 3u0r_A 99 PRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ--------GEDIVRERAIKFLSTKLKTLPDEVL 170 (507)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc--------cchHHHHHHHHHHHHHHhhcchhhc
Confidence 55566666777777777776666677777777777777544444333 4799999999999888888886544
No 142
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.40 E-value=3e+02 Score=28.92 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---
Q 000200 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK--- 413 (1871)
Q Consensus 341 vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK-~~V~eAl~~aLda~~~~~~~~l~~~~e---~i~~al~--- 413 (1871)
=+..|++|+..|.- +.|. ..++--++..-=|+| ...++.+..-|..++..+.++.+++.. .+.+.|.
T Consensus 24 D~~EA~~cl~EL~~---p~f~---~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~ 97 (152)
T 2ion_A 24 DISEAEHCLKELEV---PHFH---HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDIN 97 (152)
T ss_dssp CHHHHHHHHHHHTC---GGGH---HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---Ccch---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhc
Confidence 45788999988752 2333 344444444444564 677899999999888776678777753 3444433
Q ss_pred cCCchhHHHHHHHHHHHHhh
Q 000200 414 NKVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 414 ~KnP~vk~etl~~L~r~l~~ 433 (1871)
--.|....-...|++||+..
T Consensus 98 lDiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 98 LDVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp HHSTTHHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHHC
Confidence 46799999999999999974
No 143
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=22.19 E-value=45 Score=37.56 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHHH-hhCCC-ccChhHHHhhchhhhcccChhHHHHHHHHHHHHHHhhCC
Q 000200 142 AKAVVPAIDVMFQALS-EFGAK-IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201 (1871)
Q Consensus 142 PKvvaaai~~l~~~l~-~FG~~-vv~~K~ilk~l~~lf~~~dk~VR~ea~~L~vely~wlG~ 201 (1871)
......|+.||+.++. .+|.. ++.-...+..+-..+.+++..+|..+..|+..++.|=|+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~ 129 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP 129 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 4667888988887775 56774 455555678888889999999999999999999988763
No 144
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.70 E-value=2.7e+02 Score=29.64 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---c
Q 000200 341 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK---N 414 (1871)
Q Consensus 341 vv~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e---~i~~al~---~ 414 (1871)
=+..|++|+..|.. ..|...++--++..-=|+|..-||.+..-|..++. +.++-+++.. .+++.+. -
T Consensus 25 D~~Ea~~~l~eL~~------p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~i 97 (165)
T 2rg8_A 25 DTNEVAEMLRDLNL------GEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELAL 97 (165)
T ss_dssp CHHHHHHHHHHHTC------SGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhcc
Confidence 35677778877552 23555666666776778999999999999998865 4677777753 4444443 4
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 000200 415 KVPLVRSLTLNWVTFCIET 433 (1871)
Q Consensus 415 KnP~vk~etl~~L~r~l~~ 433 (1871)
-.|.+..-+..|++|++..
T Consensus 98 DiP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 98 DTPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp HCTTHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHc
Confidence 5799999999999999964
No 145
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.35 E-value=4.5e+02 Score=31.08 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhccccccchhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCChhhhHH---HHHHHhh---cC
Q 000200 342 AVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVE---DVKTSVK---NK 415 (1871)
Q Consensus 342 v~~A~~~i~~lA~gLr~~F~~y~~~~~~~lLeklKEKK~~V~eAl~~aLda~~~~~~~~l~~~~e---~i~~al~---~K 415 (1871)
+..|++|+..|.. ++ |...++--++..-=|+|..-|+++..-|..++..+.++-+++.. .+.+.+. --
T Consensus 27 ~~Ea~~ci~el~~----p~--~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lD 100 (339)
T 1ug3_A 27 MKEAVQCVQELAS----PS--LLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEID 100 (339)
T ss_dssp HHHHHHHHHTTCC----GG--GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC----cc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcC
Confidence 3478888877741 11 34566777778788889999999999999999776778777754 3444433 57
Q ss_pred CchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHHHHHh
Q 000200 416 VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 485 (1871)
Q Consensus 416 nP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l~~~l 485 (1871)
.|..+.-...|+++|+...--+ + ..++..+.+.+.+ +...++-..+++..+.+..|.+.+....
T Consensus 101 iP~a~~~La~~v~~~i~~g~l~-~----~~l~~~~~~~l~~-~g~~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 101 IPHVWLYLAELVTPILQEGGVP-M----GELFREITKPLRP-LGKAASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp CTTHHHHHHHHHGGGGSTTSCC-H----HHHHHHHTTTHHH-HTCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHCCCCC-H----HHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 7999999999999998652110 0 1122222222211 1123344555566666666655444333
No 146
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.14 E-value=3.9e+02 Score=27.83 Aligned_cols=97 Identities=4% Similarity=0.067 Sum_probs=50.7
Q ss_pred hhhHHHHHHHhhcCCchhHHHHHHHHHHHHhhCChhHHHHhhhhhHHHHHhhhCCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000200 402 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 481 (1871)
Q Consensus 402 ~~~~e~i~~al~~KnP~vk~etl~~L~r~l~~~~~~~~~~~~k~~~~~l~k~l~Ds~~~VR~aA~~~l~~lmk~~Ge~~l 481 (1871)
..+++-|...+..-+|.-|.-.+-.+...+++....-..-+-+.+.+.+.......++++|..-..++.+--..+-..
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~-- 119 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTG-- 119 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCS--
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCC--
Confidence 345555555555444555555544444444544322211223445556666666667899988888777776331000
Q ss_pred HHHhhcCCHHHHHHHHHHHhcC
Q 000200 482 ERSIEKLDDVRRNKLSEMIAGS 503 (1871)
Q Consensus 482 ~~~l~~Ld~~kk~KI~e~~~~~ 503 (1871)
..=..+....+|+..+.++
T Consensus 120 ---~~vF~~~~l~~i~~~l~~a 138 (144)
T 1sz9_A 120 ---LPLFEGSALEKIEQFLIKA 138 (144)
T ss_dssp ---SCSSCHHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHHHHHhh
Confidence 1112444445677777654
Done!