BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000201
(1866 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 137/251 (54%), Gaps = 10/251 (3%)
Query: 652 EPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWR 710
EPY++Q++P + ++ +++ ++ +K +LP L + E W+
Sbjct: 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 149
Query: 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770
K + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 150 EKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 830
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 210 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 268
Query: 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 885
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 269 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 326
Query: 886 GMGEEN-FPDL 895
+GE++ P+L
Sbjct: 327 NVGEDDAIPEL 337
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%)
Query: 1137 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1196
E + VA L +V + + +++P L+ + + + + + + M A K Q+
Sbjct: 110 EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169
Query: 1197 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 1251
M ELIP + + D+ EV+ +A A + ++ + I+ +P+L+ + D
Sbjct: 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 11/283 (3%)
Query: 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXX 679
L +G+ D+ +A A+ A L EPY++Q++P + ++
Sbjct: 59 LAKGIKDKKTAANAXQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASE 117
Query: 680 XXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738
+++ ++ +K +LP L + E W+ K + + A A Q++ P+++
Sbjct: 118 TLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAXVDAAKDQVALRXPELI 177
Query: 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 798
P L+E DT +V++A A + + N +I +P+L+ + DP + ++ +L
Sbjct: 178 PVLSETXWDTKKEVKAAATAAXTKATETVDNKDIERFIPSLIQCIADPTE-VPETVHLLG 236
Query: 799 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 858
TTFV V +L++ VP++ RGL ER K+K+A I+ N C LV +P+ + P++G LL
Sbjct: 237 ATTFVAEVTPATLSIXVPLLSRGLNERETGIKRKSAVIIDNXCKLVEDPQVIAPFLGKLL 296
Query: 859 PEVKK---VLVDPIPEVRSVAARAIGSLIR--GMGEEN-FPDL 895
P +K + D PE R V RA+ +L R +GE++ P+L
Sbjct: 297 PGLKSNFATIAD--PEAREVTLRALKTLRRVGNVGEDDAIPEL 337
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 10/251 (3%)
Query: 652 EPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGL-EDKAWR 710
EPY++Q++P + ++ +++ ++ +K +LP L + E W+
Sbjct: 84 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 143
Query: 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770
K + + A A Q++ P+++P L+E DT +V++A A + + N
Sbjct: 144 EKIAILAAFSAXVDAAKDQVALRXPELIPVLSETXWDTKKEVKAAATAAXTKATETVDNK 203
Query: 771 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 830
+I +P+L+ + DP + ++ +L TTFV V +L++ VP++ RGL ER K
Sbjct: 204 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIXVPLLSRGLNERETGIK 262
Query: 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 885
+K+A I+ N C LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 263 RKSAVIIDNXCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 320
Query: 886 GMGEEN-FPDL 895
+GE++ P+L
Sbjct: 321 NVGEDDAIPEL 331
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 119/547 (21%), Positives = 219/547 (40%), Gaps = 68/547 (12%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 61 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 112
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 113 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 171
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 172 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP- 1113
RA E L D R +++L + + SD + V+ A V I+ +P
Sbjct: 290 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV---IMGLSPI 346
Query: 1114 ----KTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILS 1166
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 347 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL-- 402
Query: 1167 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLA 1225
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 403 ------AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 456
Query: 1226 FSTLFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHIL 1278
L + G + A I+P +L A+ D T+ ++ L ++ T H+L
Sbjct: 457 LKKLVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHML 513
Query: 1279 PKLVHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKE 1333
P ++ + P++ + +L ++ GP L+ + P L D D+DV+ A+E
Sbjct: 514 PTVLRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQE 572
Query: 1334 AAETVTL 1340
A ++L
Sbjct: 573 ALTVLSL 579
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 234 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 291
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 292 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 351
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 352 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 402
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 403 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 462
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 463 KFGKEWAHATIIPKVL 478
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To
Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 119/547 (21%), Positives = 219/547 (40%), Gaps = 68/547 (12%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 70 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 121
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 122 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 180
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 181 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP- 1113
RA E L D R +++L + + SD + V+ A V I+ +P
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV---IMGLSPI 355
Query: 1114 ----KTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILS 1166
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 356 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL-- 411
Query: 1167 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLA 1225
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 412 ------AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 465
Query: 1226 FSTLFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHIL 1278
L + G + A I+P +L A+ D T+ ++ L ++ T H+L
Sbjct: 466 LKKLVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHML 522
Query: 1279 PKLVHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKE 1333
P ++ + P++ + +L ++ GP L+ + P L D D+DV+ A+E
Sbjct: 523 PTVLRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQE 581
Query: 1334 AAETVTL 1340
A ++L
Sbjct: 582 ALTVLSL 588
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 243 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 300
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 301 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 360
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 361 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 411
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 412 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 471
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 472 KFGKEWAHATIIPKVL 487
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 119/547 (21%), Positives = 219/547 (40%), Gaps = 68/547 (12%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 63 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 114
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 115 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 173
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 174 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP- 1113
RA E L D R +++L + + SD + V+ A V I+ +P
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV---IMGLSPI 348
Query: 1114 ----KTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILS 1166
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 349 LGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL-- 404
Query: 1167 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLA 1225
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 405 ------AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 458
Query: 1226 FSTLFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHIL 1278
L + G + A I+P +L A+ D T+ ++ L ++ T H+L
Sbjct: 459 LKKLVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHML 515
Query: 1279 PKLVHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKE 1333
P ++ + P++ + +L ++ GP L+ + P L D D+DV+ A+E
Sbjct: 516 PTVLRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQE 574
Query: 1334 AAETVTL 1340
A ++L
Sbjct: 575 ALTVLSL 581
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 236 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 293
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 294 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 353
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 354 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 404
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 405 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 464
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 465 KFGKEWAHATIIPKVL 480
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 217/544 (39%), Gaps = 62/544 (11%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 69 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 120
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 180 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1112
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1113 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 410
Query: 1170 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1228
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 411 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 1229 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 1281
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 468 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 524
Query: 1282 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 1336
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 1337 TVTL 1340
++L
Sbjct: 584 VLSL 587
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 299
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N ++ ++P + ++D N H K +L +++ + + N
Sbjct: 300 AASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 360 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 410
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 471 KFGKEWAHATIIPKVL 486
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 216/544 (39%), Gaps = 62/544 (11%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 69 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 120
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 180 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1112
RA E L D R ++L + + SD + V+ A V + +
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1113 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 410
Query: 1170 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1228
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 411 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 467
Query: 1229 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 1281
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 468 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 524
Query: 1282 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 1336
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 583
Query: 1337 TVTL 1340
++L
Sbjct: 584 VLSL 587
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 299
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N + ++P + ++D N H K +L +++ + + N
Sbjct: 300 AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 359
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 360 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 410
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 411 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 471 KFGKEWAHATIIPKVL 486
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small T
Antigen Complexed With The Protein Phosphatase 2a Aalpha
Subunit
Length = 589
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 117/544 (21%), Positives = 216/544 (39%), Gaps = 62/544 (11%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 70 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 121
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 122 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPM 180
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 181 VRRAAASKLGEFAKVL--ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L++P + + +WR+R + +L V K L + EA
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1112
RA E L D R ++L + + SD + V+ A V + +
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 1113 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169
T++ ++P+ + L +G +R+L + +LP+I+ +
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIVEL----- 411
Query: 1170 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA-LCDSILEVRESAGLAFST 1228
+ + V + + E M + F DE + ++ A L D + +RE+A
Sbjct: 412 ---AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKK 468
Query: 1229 LFKSAGMQ-AIDEIVPTLLHALEDD------QTSDTALDGLKQILSVRTTAVLPHILPKL 1281
L + G + A I+P +L A+ D T+ ++ L ++ T H+LP +
Sbjct: 469 LVEKFGKEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITT--KHMLPTV 525
Query: 1282 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 1336
+ + P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 526 LRMAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 584
Query: 1337 TVTL 1340
++L
Sbjct: 585 VLSL 588
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 109/256 (42%), Gaps = 22/256 (8%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV+P+L + EDK+WR + + ++++ +VP ++ D +V++
Sbjct: 243 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRA 300
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFV----N 804
A +++ + +N + ++P + ++D N H K +L +++ + + N
Sbjct: 301 AASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN 360
Query: 805 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 864
T++ L+P+ L++ E + I+ N+ V E + LLP + ++
Sbjct: 361 TIEH-----LLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVEL 411
Query: 865 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924
D VR + L +G E F + ++ L A D+ R A L +++
Sbjct: 412 AEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 471
Query: 925 ALGTVY-FEHILPDII 939
G + I+P ++
Sbjct: 472 KFGKEWAHATIIPKVL 487
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 119/544 (21%), Positives = 215/544 (39%), Gaps = 62/544 (11%)
Query: 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893
A+ +G +LV P+ Y+ LLP ++ + E V +A+ SL R + E+ P
Sbjct: 63 AEQLGTFTTLVGGPE----YVHCLLPPLESL---ATVEETVVRDKAVESL-RAISHEHSP 114
Query: 894 -DLVSW---LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRAS 948
DL + L+ L + R+ A GL V + + L RN CS
Sbjct: 115 SDLEAHFVPLVKRLAGGDWFTSRTSAC-GLFSVCYPRVSSAVKAELRQYFRNLCSDDTPX 173
Query: 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008
VR + + L + N +++P + +DE +SVR A+ A + +
Sbjct: 174 VRRAAASKLGEFAKVL--ELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 1009 SLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067
L L+ P + + +WR+R + +L V K L + EA
Sbjct: 232 DLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEV 291
Query: 1068 RA--------IIEVLGRDKR-----NEVLAALYMVRSDVSLSVRQAALHVWKTI--VANT 1112
RA E L D R +++L + + SD + V+ A V + +
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGK 351
Query: 1113 PKTLKEIMPVLMNTL---IXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169
T++ ++P+ + L +G +R+L + +LP+I+ L
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQLSQSLLPAIV-----EL 404
Query: 1170 KDPSASRRQGVCIGLSEVMASAGKSQL-LSFMDELIPTIRTA-LCDSILEVRESAGLAFS 1227
+ + R + I ++A QL + F DE + ++ A L D + +RE+A
Sbjct: 405 AEDAKWRVRLAIIEYXPLLAG----QLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLK 460
Query: 1228 TLFKSAGMQ-AIDEIVPTLLHALEDDQ-----TSDTALDGLKQILSVRTTAVLPHILPKL 1281
L + G + A I+P +L D T+ ++ L ++ T H LP +
Sbjct: 461 KLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITT--KHXLPTV 518
Query: 1282 VHL---PLSAFNAHALGALAEVAGPGLNFHL--GTILPALLSAMGDDDMDVQSLAKEAAE 1336
+ P++ + +L ++ GP L+ + P L D D+DV+ A+EA
Sbjct: 519 LRXAGDPVANVRFNVAKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT 577
Query: 1337 TVTL 1340
++L
Sbjct: 578 VLSL 581
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/251 (19%), Positives = 101/251 (40%), Gaps = 12/251 (4%)
Query: 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS 754
LV P+L + EDK+WR + + ++++ +VP + D +V++
Sbjct: 236 LVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITK--TDLVPAFQNLXKDCEAEVRA 293
Query: 755 AGQTALQQVGSVI-----KNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 809
A +++ + +N + ++P + ++D N H K +L ++
Sbjct: 294 AASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDN 353
Query: 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 869
++ L+P+ L++ E + I+ N+ V E + LLP + ++ D
Sbjct: 354 TIEHLLPLFLAQLKDECPEVR---LNIISNL-DCVNEVIGIRQLSQSLLPAIVELAEDAK 409
Query: 870 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929
VR L +G E F + ++ L A D+ R A L +++ G
Sbjct: 410 WRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKE 469
Query: 930 Y-FEHILPDII 939
+ I+P ++
Sbjct: 470 WAHATIIPKVL 480
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 1115 TLKEIMPVLMNTLIXXXXXXXXERRQV---AGRALGELVRKLGERVLPSIIPILSRGLKD 1171
++K+++P L+N L + V AG L + G +L ++ + + +
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1172 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1223
+ R+ + +M K Q ++ + +P+I + D L+V+E+
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 1115 TLKEIMPVLMNTLIXXXXXXXXERRQV---AGRALGELVRKLGERVLPSIIPILSRGLKD 1171
++K+++P L+N L + V AG L + G +L ++ + + +
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1172 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1223
+ R+ + +M K Q ++ + +P+I + D L+V+E+
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA 432
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 26/245 (10%)
Query: 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLD 795
K+V + ++L D + +VQ+ L + S +K ++ ++V TL + + +
Sbjct: 71 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISS 130
Query: 796 ILLQTTFVNTVDAPSLALLVPIVHRGL---------RERSAETKKKAAQIVGNMCS---- 842
I L+T A S + L V + + ++ + +A I+ +M S
Sbjct: 131 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 190
Query: 843 -LVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900
LV + P I LLP+ L P VR A+G L+ G F DL+ LL
Sbjct: 191 LLV----NFHPSILTCLLPQ----LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 242
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLF 957
L ++S Q ++ + G Y E I+P +++ C+ +R+ + F
Sbjct: 243 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 302
Query: 958 KYLPR 962
+ R
Sbjct: 303 ESFVR 307
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----THPK 751
++ +L K +++K+ +T+Q +L + P L+Q +P +VP + L D ++ K
Sbjct: 458 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 517
Query: 752 VQ--SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786
+ S L + +P + +LVP ++ + DP
Sbjct: 518 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 554
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 110/277 (39%), Gaps = 28/277 (10%)
Query: 531 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKY 589
DD VV +L +L + VQ CL PL+ +++ + T+V L ++ SDK
Sbjct: 65 DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-SDKE 123
Query: 590 GERRGAAFGLAGVV-------KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 642
R ++ GL V+ G +++ I L +A + + AL
Sbjct: 124 QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 183
Query: 643 LCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLK 702
+ + G L ++ P +L Q + L +V L++
Sbjct: 184 MLSRQGGL----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE 239
Query: 703 GL-----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 757
L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++ +
Sbjct: 240 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR---E 296
Query: 758 TALQQVGSVIKN------PEIASLVPTLLMGLT-DPN 787
+Q S ++ P +++++ L LT DPN
Sbjct: 297 YCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 333
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 860 EVKKVLVD----PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 915
E+K V+++ P EV+S A+ A+GS+ G N P+ + ++L + S +
Sbjct: 879 ELKSVILEAFSSPSEEVKSAASYALGSISVG----NLPEYLPFVLQEITSQPK--RQYLL 932
Query: 916 AQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRD------GYLTLFKYLPRSLG 965
L E++++ V Y E+I ++++C R+ G LTL P +L
Sbjct: 933 LHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVVECLGKLTLID--PETLL 990
Query: 966 VQFQNYL 972
+ + YL
Sbjct: 991 PRLKGYL 997
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 26/245 (10%)
Query: 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLD 795
K+V + ++L D + +VQ+ L + S +K ++ ++V TL + + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISS 107
Query: 796 ILLQTTFVNTVDAPSLALLVPIVHRGL---------RERSAETKKKAAQIVGNMCS---- 842
I L+T A S + L V + + ++ + +A I+ +M S
Sbjct: 108 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167
Query: 843 -LVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900
LV + P I LLP+ L P VR A+G L+ G F DL+ LL
Sbjct: 168 LLV----NFHPSILTCLLPQ----LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219
Query: 901 DALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNCSHQRASVRDGYLTLF 957
L ++S Q ++ + G Y E I+P +++ C+ +R+ + F
Sbjct: 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279
Query: 958 KYLPR 962
+ R
Sbjct: 280 ESFVR 284
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD----THPK 751
++ +L K +++K+ +T+Q +L + P L+Q +P +VP + L D ++ K
Sbjct: 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLK 494
Query: 752 VQ--SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786
+ S L + +P + +LVP ++ + DP
Sbjct: 495 IDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 860 EVKKVLVD----PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 915
E+K V+++ P EV+S A+ A+GS+ G N P+ + ++L + S +
Sbjct: 856 ELKSVILEAFSSPSEEVKSAASYALGSISVG----NLPEYLPFVLQEITSQPK--RQYLL 909
Query: 916 AQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRD------GYLTLFKYLPRSLG 965
L E++++ V Y E+I ++++C R+ G LTL P +L
Sbjct: 910 LHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--PETLL 967
Query: 966 VQFQNYL 972
+ + YL
Sbjct: 968 PRLKGYL 974
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 123/315 (39%), Gaps = 39/315 (12%)
Query: 498 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV-----HAVVDKLLDVLNTPSEA 552
N L K S ++ + + T L L KD K+ VV +L +L +
Sbjct: 10 NLLEKMTSSDKDFRFMA------TNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 553 VQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVV-------K 604
VQ CL PL+ +++ + T+V L ++ SDK R ++ GL V+
Sbjct: 64 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNML-SDKEQLRDISSIGLKTVIGELPPASS 122
Query: 605 GFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 664
G +++ I L +A + + AL + + G L ++ P +L
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL----LVNFHPSILT 178
Query: 665 AFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGL-----EDKAWRTKQSSVQLL 719
Q + L +V L++ L ++ + T ++ +Q +
Sbjct: 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI 238
Query: 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PEIA 773
A++ A ++ + L KI+P + + +++ + +Q S ++ P ++
Sbjct: 239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR---EYCIQAFESFVRRCPKEVYPHVS 295
Query: 774 SLVPTLLMGLT-DPN 787
+++ L LT DPN
Sbjct: 296 TIINICLKYLTYDPN 310
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 756 GQTALQQVGS-VIKNPEIASLVPTL 779
L + V+ P L P +
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLM 444
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 872 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 929
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396
Query: 930 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 515
Query: 1049 KAL 1051
L
Sbjct: 516 HHL 518
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 20/163 (12%)
Query: 1470 IFLQGLISGSA---------ELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 1520
I L+G + G + LR+ +A L L V ++ ++P PL++ +
Sbjct: 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFH 370
Query: 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXX 1580
W VK + + L I + P+LP+L I+CL D VR
Sbjct: 371 HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430
Query: 1581 X------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 1617
T + PL+ +LL + S+ ++EA +A + + A
Sbjct: 431 VVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1213
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL----D 453
Query: 1214 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 1250
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 454 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 486
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 104/247 (42%), Gaps = 41/247 (16%)
Query: 804 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 863
+ +D P L +++P + + S + + A V +++ + ++ +I + +
Sbjct: 166 DVLDRP-LNIMIPKFLQFFKHSSPKIRSHAVACVNQF--IISRTQALMLHIDSFIENLFA 222
Query: 864 VLVDPIPEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLS 920
+ D PEVR RA+ L+ + P ++V ++L + + NV L
Sbjct: 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL- 281
Query: 921 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-----GVQFQNYLQQV 975
T+ + I D+ L ++LP+ + G+++ + +
Sbjct: 282 -------TLAEQPICKDV-----------------LVRHLPKLIPVLVNGMKYSDIDIIL 317
Query: 976 LPAILDGLADENESVRDAAL-----GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1030
L ++G + ++++ D L A VL Y LP +LP +++ +F+ W +++
Sbjct: 318 LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKE 377
Query: 1031 SSVELLG 1037
S + +LG
Sbjct: 378 SGILVLG 384
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 29/224 (12%)
Query: 685 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744
+ QL A+ L L + + ++DK +QSS LLG + Q + C+ +P L
Sbjct: 621 IEQLVARSNILTL--MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-- 676
Query: 745 LTDTHPKVQSAGQTALQQVG--SVIKNPEIASLVPTLLMGLTD----PNDHTKYSLDILL 798
T+ +P+ S A +G S+ E+ +P +L L + PN + LL
Sbjct: 677 -TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-----TPKTLL 730
Query: 799 QTTFVNTVD---------APSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPK 848
+ T + AP L + LR R E K A + + M S+ P
Sbjct: 731 ENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV--NPS 788
Query: 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 892
+I V ++P ++R + + + +G+EN+
Sbjct: 789 GVIQDFIFFCDAVAS-WINPKDDLRDMFCKILHGFKNQVGDENW 831
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 398 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 457
Query: 756 GQTALQQVGS-VIKNPEIASLVPTL 779
L + V+ P L P +
Sbjct: 458 TCWTLSRYAHWVVSQPPDTYLKPLM 482
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 872 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 929
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 375 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 434
Query: 930 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 435 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 494
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 495 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 553
Query: 1049 KAL 1051
L
Sbjct: 554 HHL 556
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1213
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 436 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL----D 491
Query: 1214 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 1250
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 492 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 524
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 1541
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 375 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 429
Query: 1542 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 1595
+ P+LP+L I+CL D VR T + PL+ +LL +
Sbjct: 430 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 489
Query: 1596 QVSDAGIREAILTALKGVLKHA 1617
S+ ++EA +A + + A
Sbjct: 490 LDSNKRVQEAACSAFATLEEEA 511
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 685 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744
+ QL A+ L L + + ++DK +QSS LLG + Q + C+ +P L
Sbjct: 659 IEQLVARSNILTL--MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-- 714
Query: 745 LTDTHPKVQSAGQTALQQVG--SVIKNPEIASLVPTLLMGLTD 785
T+ +P+ S A +G S+ E+ +P +L L +
Sbjct: 715 -TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 756
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
++R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 374 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 422
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 373 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 432
Query: 756 GQTALQQVGS-VIKNPEIASLVPTL 779
L + V+ P L P +
Sbjct: 433 TCWTLSRYAHWVVSQPPDTYLKPLM 457
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 872 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 929
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 350 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 409
Query: 930 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
Y ++P +I+ S ++A VR TL +Y + YL+ ++ +L + D N+
Sbjct: 410 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 469
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 470 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 528
Query: 1049 KAL 1051
L
Sbjct: 529 HHL 531
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSE----VMASAGKSQLLSFMDELIPTIRTALCD 1213
LP +IP L + L D A R C LS V++ + L M EL+ I D
Sbjct: 411 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL----D 466
Query: 1214 SILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 1250
S V+E+A AF+TL + +A E+VP L + L+
Sbjct: 467 SNKRVQEAACSAFATLEE----EACTELVPYLAYILD 499
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 1541
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 350 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 404
Query: 1542 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 1595
+ P+LP+L I+CL D VR T + PL+ +LL +
Sbjct: 405 QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI 464
Query: 1596 QVSDAGIREAILTALKGVLKHA 1617
S+ ++EA +A + + A
Sbjct: 465 LDSNKRVQEAACSAFATLEEEA 486
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
D ++D N +R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 343 DTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 397
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 685 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744
+ QL A+ L L + + ++DK +QSS LLG + Q + C+ +P L
Sbjct: 634 IEQLVARSNILTL--MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-- 689
Query: 745 LTDTHPKVQSAGQTALQQVG--SVIKNPEIASLVPTLLMGLTD 785
T+ +P+ S A +G S+ E+ +P +L L +
Sbjct: 690 -TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 731
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 755
+LP L + L W K+S + +LGA+A Q LP+++P L + L+D V+S
Sbjct: 398 ILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSI 457
Query: 756 GQTALQQVGS-VIKNPEIASLVP---TLLMGLTDPN 787
L + V+ P L P LL + D N
Sbjct: 458 TCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSN 493
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Query: 872 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG--AAQGLSEVLAALGTV 929
+R +A A+ L +E P ++ L + L V+ SG ++E
Sbjct: 375 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGXIP 434
Query: 930 YFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 988
Y ++P +I+ S ++A VR TL +Y + YL+ + +L + D N+
Sbjct: 435 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNK 494
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048
V++AA A L E T +P L ++ +F + + + ++ +L D + +A + G
Sbjct: 495 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTLADSVG 553
Query: 1049 KAL 1051
L
Sbjct: 554 HHL 556
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 1158 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217
LP +IP L + L D A R C LS +++ L + + DS
Sbjct: 436 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKR 495
Query: 1218 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 1250
V+E+A AF+TL + +A E+VP L + L+
Sbjct: 496 VQEAACSAFATLEE----EACTELVPYLAYILD 524
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 1541
LR+ +A L L V ++ ++P PL++ + W VK + + L I
Sbjct: 375 LRKCSAAALDVLANVYRDE-----LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCX 429
Query: 1542 IALKPFLPQLQTTFIKCLQDSTRTVRXXXXXXXXXXXXXX------TRVDPLVGDLLSSL 1595
P+LP+L I+CL D VR T + PL +LL +
Sbjct: 430 QGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRI 489
Query: 1596 QVSDAGIREAILTALKGVLKHA 1617
S+ ++EA +A + + A
Sbjct: 490 LDSNKRVQEAACSAFATLEEEA 511
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1037
++R + A VL Y LP +LP +++ +F+ W +++S + +LG
Sbjct: 374 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 422
>pdb|3FLO|A Chain A, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|C Chain C, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|E Chain E, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
pdb|3FLO|G Chain G, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast
Dna Polymerase Alpha In Complex With Its B Subunit
Length = 460
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 1698 PSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-----GPANTTVVV 1752
P + M F+ I L +S K FP + K L L L P TV++
Sbjct: 181 PHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTISPHIQTVLI 240
Query: 1753 DILASVVS--ALHDDSSEVRRRALSALKSVAK--ANPSAIMVHVALFGPA-------LAE 1801
+S A + +S +R+ AL K K ANPS+ ++ FG + L E
Sbjct: 241 PSTKDAISNHAAYPQASLIRK-ALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKE 299
Query: 1802 CLKDGSTPVRLAAERCAVHAFQLTR 1826
+K G+T R +R + H Q R
Sbjct: 300 VIKGGTTSSRYRLDRVSEHILQQRR 324
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound
To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1233 AGMQAIDEI 1241
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1233 AGMQAIDEI 1241
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From Yeast
Nsp1p. Second Crystal Form
Length = 442
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1223
R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 479 MIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 537
MI +++GR N+S + + N + Y + GV+ FT +LAK LA + V+A
Sbjct: 167 MINNRYGRIINISSIVGLTGNV------GQANYSSSKAGVIGFTKSLAKELASRNITVNA 220
Query: 538 VVDKLL--DVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA 595
+ + D+ + SE +++ + S + +E L + SDK G G
Sbjct: 221 IAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLAC-----FLSSDKSGYINGR 275
Query: 596 AFGLAG 601
F + G
Sbjct: 276 VFVIDG 281
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1233 AGMQAIDEI 1241
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain Trapped
In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain Trapped
In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438
Query: 1233 AGMQAIDEI 1241
AI+++
Sbjct: 439 LPEAAINDV 447
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGCIL-EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 1116 LKEIMPVLMNTLIXXXXXXXXERR---QVAGRALGELVRKLGERVLPSIIPILSRGLKDP 1172
L+ ++P+L TL + + AG L L + ++P ++P + +K+P
Sbjct: 194 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 253
Query: 1173 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232
R + ++ SQL + + +PT+ + D + VR++A + +
Sbjct: 254 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 313
Query: 1233 AGMQAIDEI 1241
AI+++
Sbjct: 314 LPEAAINDV 322
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F L P + PL + + L +KD +R+ + +GR+
Sbjct: 253 PDWRYRDAAVMAFGCILE-GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 310
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 1678 PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRL 1736
P W R +V+ F + L P + PL + + L +KD +R+ + +GR+
Sbjct: 378 PDWRYRDAAVMAFGSIL-EGPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRI 435
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a
Core Enzyme
Length = 232
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 1139 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLS 1198
++++ AL V +L + +LP+I+ + + + V + + E M +
Sbjct: 29 KKLSTIALALGVERLSQSLLPAIVEL--------AEDAKWRVRLAIIEYMPLLAGQLGVE 80
Query: 1199 FMDELIPTIRTA-LCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDD---- 1252
F DE + ++ A L D + +RE+A L + G + A I+P +L A+ D
Sbjct: 81 FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL-AMSGDPNYL 139
Query: 1253 --QTSDTALDGLKQILSVRTTAVLPHILPKLVHL---PLSAFNAHALGALAEVAGPGL-N 1306
T+ ++ L ++ T H+LP ++ + P++ + +L ++ GP L N
Sbjct: 140 HRMTTLFCINVLSEVCGQDITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKI-GPILDN 196
Query: 1307 FHLGT-ILPALLSAMGDDDMDVQSLAKEAAETVTL 1340
L + + P L D D+DV+ A+EA ++L
Sbjct: 197 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 231
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In
Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In
Thermus Thermophilus Hb27
Length = 217
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 1084 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAG 1143
A ++ R+ + L + AL KT+VA TP+ L M VL + RQ
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM-VLSEAYVALY-------RQAED 92
Query: 1144 RALGE-------LVRKLGERVLPSIIPI-LSRGLKDPSASRRQGVCIGLSEV-MASAGKS 1194
R G+ V K ERV P P+ L RGL V L E A A
Sbjct: 93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL----------VYALLGERDKAEASLK 142
Query: 1195 QLLSFMDELIPTIRTALCDSILEV 1218
Q L+ D P IR+AL + L +
Sbjct: 143 QALALED--TPEIRSALAELYLSM 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,510,391
Number of Sequences: 62578
Number of extensions: 1764804
Number of successful extensions: 5188
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4916
Number of HSP's gapped (non-prelim): 263
length of query: 1866
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1753
effective length of database: 7,902,023
effective search space: 13852246319
effective search space used: 13852246319
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)