Query 000201
Match_columns 1866
No_of_seqs 775 out of 4187
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1242 Protein containing ada 100.0 1.6E-55 3.5E-60 517.3 41.9 561 438-1004 3-565 (569)
2 KOG1824 TATA-binding protein-i 100.0 5.8E-49 1.3E-53 467.7 84.9 1046 699-1841 9-1203(1233)
3 KOG2171 Karyopherin (importin) 100.0 2.4E-43 5.3E-48 437.8 83.9 862 368-1402 5-938 (1075)
4 KOG2171 Karyopherin (importin) 100.0 4.7E-41 1E-45 417.6 76.9 888 817-1859 8-990 (1075)
5 KOG1241 Karyopherin (importin) 100.0 1.3E-42 2.8E-47 408.6 48.5 648 294-1006 1-766 (859)
6 KOG1824 TATA-binding protein-i 100.0 1.3E-33 2.8E-38 337.3 86.4 964 535-1679 45-1057(1233)
7 KOG2023 Nuclear transport rece 100.0 4.7E-34 1E-38 329.9 46.3 704 368-1157 14-823 (885)
8 COG5215 KAP95 Karyopherin (imp 100.0 2.3E-32 5.1E-37 310.0 48.1 685 293-1044 3-812 (858)
9 KOG2023 Nuclear transport rece 100.0 1.3E-28 2.8E-33 285.2 52.6 774 744-1660 21-860 (885)
10 PLN03200 cellulose synthase-in 100.0 9.4E-23 2E-27 275.5 100.5 1342 370-1791 16-1607(2102)
11 KOG1241 Karyopherin (importin) 100.0 2.1E-25 4.6E-30 264.1 61.0 732 747-1663 12-817 (859)
12 KOG0915 Uncharacterized conser 100.0 3.2E-25 7E-30 279.2 63.1 619 1159-1826 817-1513(1702)
13 PLN03200 cellulose synthase-in 100.0 6.9E-20 1.5E-24 248.2 104.4 1351 368-1782 100-1679(2102)
14 KOG0915 Uncharacterized conser 99.9 4E-20 8.7E-25 233.9 72.2 793 637-1549 556-1480(1702)
15 KOG0213 Splicing factor 3b, su 99.9 1.2E-20 2.5E-25 220.9 58.1 665 463-1229 373-1063(1172)
16 KOG0213 Splicing factor 3b, su 99.9 3.2E-20 7E-25 217.2 57.2 731 658-1419 365-1142(1172)
17 COG5215 KAP95 Karyopherin (imp 99.9 1.1E-17 2.3E-22 191.7 61.5 657 856-1667 94-819 (858)
18 KOG1242 Protein containing ada 99.9 7.9E-21 1.7E-25 225.3 36.9 520 741-1334 22-558 (569)
19 COG5181 HSH155 U2 snRNP splice 99.9 3.9E-19 8.5E-24 204.5 45.5 664 463-1229 178-868 (975)
20 COG5181 HSH155 U2 snRNP splice 99.9 3.8E-17 8.2E-22 188.4 53.0 720 665-1419 176-947 (975)
21 KOG0211 Protein phosphatase 2A 99.9 3.8E-19 8.3E-24 223.5 40.1 529 451-1039 120-662 (759)
22 KOG0211 Protein phosphatase 2A 99.8 7.5E-18 1.6E-22 211.9 41.1 558 586-1234 93-667 (759)
23 KOG0212 Uncharacterized conser 99.7 1.1E-13 2.4E-18 160.2 38.1 463 1127-1700 5-485 (675)
24 KOG1248 Uncharacterized conser 99.6 2.7E-09 5.9E-14 135.6 72.1 791 519-1510 73-913 (1176)
25 KOG1248 Uncharacterized conser 99.6 3E-10 6.6E-15 144.0 63.1 761 877-1703 72-906 (1176)
26 KOG0212 Uncharacterized conser 99.6 2.3E-12 5.1E-17 149.4 40.8 424 663-1155 6-448 (675)
27 KOG1943 Beta-tubulin folding c 99.6 6.3E-09 1.4E-13 130.6 64.2 693 868-1699 137-885 (1133)
28 KOG1943 Beta-tubulin folding c 99.6 3.9E-08 8.4E-13 123.8 69.3 574 590-1251 190-811 (1133)
29 PF01602 Adaptin_N: Adaptin N 99.5 6.3E-11 1.4E-15 155.2 43.4 491 588-1185 19-520 (526)
30 PF01602 Adaptin_N: Adaptin N 99.5 1.8E-10 3.9E-15 150.8 43.5 438 535-1000 77-521 (526)
31 KOG1991 Nuclear transport rece 99.4 6.4E-08 1.4E-12 121.1 55.9 643 293-994 3-791 (1010)
32 PTZ00429 beta-adaptin; Provisi 99.4 1.7E-08 3.7E-13 130.3 52.2 500 578-1146 36-541 (746)
33 PTZ00429 beta-adaptin; Provisi 99.4 3.4E-08 7.4E-13 127.6 53.4 494 463-1001 42-544 (746)
34 KOG0166 Karyopherin (importin) 99.4 1.2E-10 2.7E-15 139.0 28.1 379 659-1039 68-484 (514)
35 KOG0166 Karyopherin (importin) 99.3 2.3E-10 4.9E-15 136.8 27.6 342 578-924 70-436 (514)
36 PRK13800 putative oxidoreducta 99.3 1.3E-10 2.9E-15 157.9 27.7 273 658-999 622-895 (897)
37 PRK09687 putative lyase; Provi 99.3 1.4E-10 3E-15 134.4 23.2 251 659-958 25-278 (280)
38 PRK09687 putative lyase; Provi 99.3 3.7E-10 7.9E-15 130.9 24.6 252 696-999 24-278 (280)
39 PRK13800 putative oxidoreducta 99.2 7.8E-10 1.7E-14 150.5 26.3 273 696-1037 622-895 (897)
40 KOG1991 Nuclear transport rece 99.2 8.7E-05 1.9E-09 93.9 67.4 466 589-1158 18-580 (1010)
41 KOG1967 DNA repair/transcripti 99.2 3.2E-05 6.9E-10 96.6 58.2 215 1326-1577 789-1022(1030)
42 KOG1992 Nuclear export recepto 99.0 3.5E-06 7.6E-11 103.4 42.9 658 293-986 4-775 (960)
43 PF10508 Proteasom_PSMB: Prote 99.0 1.1E-06 2.3E-11 111.8 40.4 395 662-1150 43-461 (503)
44 KOG1992 Nuclear export recepto 99.0 0.00015 3.3E-09 89.5 55.5 260 711-985 263-559 (960)
45 COG5064 SRP1 Karyopherin (impo 99.0 3.6E-08 7.7E-13 107.9 22.0 310 572-885 69-398 (526)
46 COG5064 SRP1 Karyopherin (impo 98.9 2.4E-08 5.3E-13 109.1 16.0 307 694-1003 113-443 (526)
47 KOG1059 Vesicle coat complex A 98.9 3.8E-05 8.3E-10 93.2 43.6 231 655-905 142-382 (877)
48 KOG1967 DNA repair/transcripti 98.9 0.0011 2.3E-08 83.6 57.6 212 1524-1738 789-1024(1030)
49 KOG1060 Vesicle coat complex A 98.8 2.5E-05 5.5E-10 95.5 39.3 462 583-1115 43-538 (968)
50 PF12348 CLASP_N: CLASP N term 98.8 1E-07 2.3E-12 109.3 18.3 183 584-769 16-210 (228)
51 PF10508 Proteasom_PSMB: Prote 98.8 3.9E-06 8.4E-11 106.7 31.5 347 1471-1826 43-423 (503)
52 KOG1060 Vesicle coat complex A 98.8 2.4E-05 5.1E-10 95.8 35.7 448 699-1225 39-527 (968)
53 KOG1240 Protein kinase contain 98.8 1.1E-06 2.4E-11 111.6 25.3 295 616-966 423-729 (1431)
54 KOG0392 SNF2 family DNA-depend 98.8 0.00037 8E-09 89.8 47.1 131 1292-1423 798-929 (1549)
55 KOG2274 Predicted importin 9 [ 98.8 0.0027 5.8E-08 80.0 65.3 253 1304-1596 523-795 (1005)
56 PF12348 CLASP_N: CLASP N term 98.7 2.3E-07 5.1E-12 106.4 17.9 200 1013-1237 8-212 (228)
57 KOG1062 Vesicle coat complex A 98.7 5.6E-05 1.2E-09 93.3 37.0 428 1309-1780 105-579 (866)
58 KOG4224 Armadillo repeat prote 98.7 2.6E-06 5.6E-11 94.6 21.7 341 658-1003 86-446 (550)
59 KOG0413 Uncharacterized conser 98.7 0.0018 3.9E-08 80.9 47.5 134 1519-1661 941-1077(1529)
60 KOG1240 Protein kinase contain 98.6 8E-07 1.7E-11 112.8 18.1 264 512-797 438-719 (1431)
61 KOG1062 Vesicle coat complex A 98.6 0.00087 1.9E-08 83.2 43.3 320 582-929 77-419 (866)
62 KOG2021 Nuclear mRNA export fa 98.6 0.0038 8.3E-08 76.7 47.5 275 672-983 414-747 (980)
63 KOG4224 Armadillo repeat prote 98.6 1.4E-05 3E-10 89.0 24.3 338 583-925 93-447 (550)
64 KOG1020 Sister chromatid cohes 98.6 0.013 2.9E-07 77.9 61.8 151 633-791 794-948 (1692)
65 KOG1020 Sister chromatid cohes 98.6 0.013 2.9E-07 77.9 58.6 442 1311-1788 892-1411(1692)
66 COG5656 SXM1 Importin, protein 98.5 0.0061 1.3E-07 75.0 46.8 343 594-941 389-774 (970)
67 KOG0392 SNF2 family DNA-depend 98.5 0.00065 1.4E-08 87.7 40.5 177 1482-1660 749-928 (1549)
68 KOG0891 DNA-dependent protein 98.5 0.035 7.5E-07 80.0 62.2 451 1081-1552 565-1055(2341)
69 KOG2274 Predicted importin 9 [ 98.5 0.015 3.2E-07 73.6 66.1 714 862-1673 10-792 (1005)
70 PF12755 Vac14_Fab1_bd: Vacuol 98.5 8.3E-07 1.8E-11 84.0 9.6 93 632-763 2-94 (97)
71 PF12460 MMS19_C: RNAPII trans 98.5 0.0002 4.2E-09 89.6 33.7 361 578-982 3-414 (415)
72 PF12460 MMS19_C: RNAPII trans 98.4 0.00033 7.1E-09 87.6 34.4 207 572-781 187-413 (415)
73 KOG1061 Vesicle coat complex A 98.4 0.00093 2E-08 83.3 36.5 354 813-1223 121-481 (734)
74 KOG1820 Microtubule-associated 98.4 6.7E-06 1.4E-10 106.1 18.8 340 857-1243 99-455 (815)
75 PF12755 Vac14_Fab1_bd: Vacuol 98.4 1.5E-06 3.2E-11 82.3 9.5 87 711-797 2-91 (97)
76 COG5240 SEC21 Vesicle coat com 98.4 0.003 6.4E-08 75.0 37.9 287 809-1149 260-553 (898)
77 KOG4535 HEAT and armadillo rep 98.4 0.0033 7.1E-08 73.2 37.3 488 987-1535 9-600 (728)
78 KOG4535 HEAT and armadillo rep 98.4 5.3E-05 1.2E-09 87.4 22.8 494 630-1150 10-602 (728)
79 KOG2062 26S proteasome regulat 98.4 0.02 4.4E-07 70.7 45.9 283 874-1218 397-681 (929)
80 COG5240 SEC21 Vesicle coat com 98.4 0.0032 7E-08 74.7 37.4 278 736-1029 65-357 (898)
81 KOG1820 Microtubule-associated 98.3 1E-05 2.3E-10 104.4 18.1 198 579-779 257-457 (815)
82 KOG1061 Vesicle coat complex A 98.3 0.002 4.3E-08 80.5 36.3 428 537-997 86-522 (734)
83 KOG1059 Vesicle coat complex A 98.3 0.0055 1.2E-07 75.2 38.7 334 1466-1826 144-493 (877)
84 KOG1993 Nuclear transport rece 98.3 0.032 7E-07 69.6 56.1 217 633-890 414-649 (978)
85 KOG1077 Vesicle coat complex A 98.3 0.0029 6.3E-08 77.1 34.9 457 1118-1654 107-584 (938)
86 KOG0414 Chromosome condensatio 98.2 0.075 1.6E-06 69.6 62.5 146 1463-1617 916-1066(1251)
87 KOG1077 Vesicle coat complex A 98.2 0.012 2.7E-07 71.9 37.4 295 637-979 129-450 (938)
88 KOG2956 CLIP-associating prote 98.1 0.00013 2.9E-09 85.0 19.5 199 572-774 284-486 (516)
89 KOG2259 Uncharacterized conser 98.1 0.00011 2.4E-09 88.5 17.7 226 938-1186 203-472 (823)
90 KOG0413 Uncharacterized conser 98.0 0.11 2.4E-06 65.8 42.8 123 1706-1838 965-1088(1529)
91 KOG1078 Vesicle coat complex C 98.0 0.03 6.5E-07 70.0 37.3 285 812-1150 244-531 (865)
92 PF13513 HEAT_EZ: HEAT-like re 98.0 7.4E-06 1.6E-10 69.6 4.6 55 709-763 1-55 (55)
93 COG1413 FOG: HEAT repeat [Ener 98.0 0.0013 2.8E-08 80.5 25.9 247 657-961 43-303 (335)
94 PF05804 KAP: Kinesin-associat 98.0 0.016 3.4E-07 75.1 36.0 354 635-1003 268-649 (708)
95 KOG2259 Uncharacterized conser 98.0 0.0076 1.6E-07 73.3 30.6 258 857-1156 199-516 (823)
96 TIGR02270 conserved hypothetic 98.0 0.00085 1.8E-08 81.9 23.5 238 617-922 56-294 (410)
97 KOG2032 Uncharacterized conser 97.9 0.0024 5.2E-08 75.4 25.1 157 852-1008 254-421 (533)
98 COG5096 Vesicle coat complex, 97.9 0.088 1.9E-06 67.8 40.8 170 700-886 23-196 (757)
99 KOG0946 ER-Golgi vesicle-tethe 97.9 0.14 3E-06 64.1 40.6 364 572-959 20-434 (970)
100 TIGR02270 conserved hypothetic 97.9 0.0013 2.8E-08 80.4 23.9 239 696-1002 55-295 (410)
101 COG1413 FOG: HEAT repeat [Ener 97.9 0.0027 5.8E-08 77.7 26.5 212 616-881 44-269 (335)
102 KOG1058 Vesicle coat complex C 97.8 0.023 4.9E-07 70.4 31.4 321 658-1043 100-427 (948)
103 KOG2032 Uncharacterized conser 97.8 0.031 6.8E-07 66.4 31.1 141 1081-1221 258-406 (533)
104 KOG1078 Vesicle coat complex C 97.7 0.15 3.3E-06 64.0 36.9 133 1513-1656 396-531 (865)
105 PF08623 TIP120: TATA-binding 97.7 0.00014 3.1E-09 75.7 9.6 117 1718-1841 36-166 (169)
106 KOG0168 Putative ubiquitin fus 97.7 0.019 4.2E-07 71.9 29.1 195 574-768 167-367 (1051)
107 KOG1058 Vesicle coat complex C 97.7 0.24 5.2E-06 61.8 37.4 95 1091-1190 369-464 (948)
108 KOG0414 Chromosome condensatio 97.7 0.49 1.1E-05 62.5 63.1 147 1521-1678 935-1083(1251)
109 COG5096 Vesicle coat complex, 97.7 0.43 9.3E-06 61.8 44.6 166 586-766 30-196 (757)
110 KOG1525 Sister chromatid cohes 97.7 0.67 1.4E-05 63.8 51.5 358 498-873 57-441 (1266)
111 KOG2956 CLIP-associating prote 97.7 0.0026 5.6E-08 74.7 19.5 191 1479-1671 300-491 (516)
112 KOG0168 Putative ubiquitin fus 97.5 0.12 2.5E-06 65.3 31.9 186 698-889 170-368 (1051)
113 KOG4413 26S proteasome regulat 97.5 0.14 3E-06 57.4 29.2 253 1141-1421 62-335 (524)
114 cd00020 ARM Armadillo/beta-cat 97.5 0.0007 1.5E-08 68.6 10.4 111 696-841 8-119 (120)
115 PF14500 MMS19_N: Dos2-interac 97.5 0.012 2.6E-07 67.6 21.3 226 511-742 13-256 (262)
116 cd00020 ARM Armadillo/beta-cat 97.4 0.00079 1.7E-08 68.3 10.6 107 658-764 8-119 (120)
117 PF05804 KAP: Kinesin-associat 97.4 1 2.2E-05 58.9 40.8 167 713-883 267-439 (708)
118 PF13646 HEAT_2: HEAT repeats; 97.4 0.0005 1.1E-08 65.2 7.7 86 659-761 1-88 (88)
119 PF05004 IFRD: Interferon-rela 97.4 0.01 2.3E-07 70.2 20.0 187 818-1004 48-258 (309)
120 PF12717 Cnd1: non-SMC mitotic 97.3 0.0071 1.5E-07 65.8 17.0 110 1563-1676 1-111 (178)
121 PF12717 Cnd1: non-SMC mitotic 97.3 0.012 2.5E-07 64.2 18.0 110 1479-1597 1-112 (178)
122 KOG2081 Nuclear transport regu 97.3 0.76 1.7E-05 56.3 34.0 274 490-772 152-465 (559)
123 KOG2062 26S proteasome regulat 97.3 1 2.2E-05 56.5 48.3 171 1345-1574 518-689 (929)
124 PF10274 ParcG: Parkin co-regu 97.3 0.0011 2.3E-08 69.8 9.1 92 1464-1556 36-130 (183)
125 KOG4653 Uncharacterized conser 97.2 0.042 9.1E-07 69.4 23.6 221 858-1151 729-964 (982)
126 PF13646 HEAT_2: HEAT repeats; 97.2 0.0017 3.7E-08 61.6 9.5 87 815-920 1-88 (88)
127 KOG2933 Uncharacterized conser 97.2 0.0049 1.1E-07 68.9 13.7 181 694-879 87-271 (334)
128 PF05004 IFRD: Interferon-rela 97.2 0.024 5.2E-07 67.2 20.7 189 1469-1658 46-258 (309)
129 KOG0567 HEAT repeat-containing 97.2 0.023 5.1E-07 62.2 18.4 244 659-968 38-286 (289)
130 KOG0891 DNA-dependent protein 97.2 3.4 7.3E-05 60.8 62.1 256 1319-1582 489-766 (2341)
131 KOG1822 Uncharacterized conser 97.1 2.7 5.8E-05 58.7 74.6 183 669-887 64-250 (2067)
132 KOG1822 Uncharacterized conser 97.1 2.7 5.8E-05 58.7 87.2 193 573-767 50-250 (2067)
133 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00083 1.8E-08 57.0 5.4 54 947-1000 1-54 (55)
134 KOG4653 Uncharacterized conser 97.1 0.023 5E-07 71.6 19.2 220 935-1187 729-962 (982)
135 KOG1243 Protein kinase [Genera 97.1 0.007 1.5E-07 75.1 14.8 248 586-842 265-515 (690)
136 COG5218 YCG1 Chromosome conden 97.1 1.3 2.8E-05 53.9 42.7 211 651-884 43-265 (885)
137 PF04826 Arm_2: Armadillo-like 97.0 0.03 6.5E-07 63.9 18.6 145 617-765 14-163 (254)
138 KOG1243 Protein kinase [Genera 97.0 0.0089 1.9E-07 74.3 14.7 247 750-1005 268-517 (690)
139 PF05918 API5: Apoptosis inhib 97.0 0.24 5.2E-06 62.1 27.0 291 1478-1786 34-349 (556)
140 COG5116 RPN2 26S proteasome re 97.0 0.028 6.1E-07 67.0 17.7 228 535-787 444-675 (926)
141 PF14500 MMS19_N: Dos2-interac 97.0 0.18 3.9E-06 58.1 23.9 238 1354-1636 4-258 (262)
142 KOG1293 Proteins containing ar 96.9 1.5 3.3E-05 54.7 32.1 402 635-1040 72-532 (678)
143 PF04826 Arm_2: Armadillo-like 96.9 0.026 5.6E-07 64.5 16.3 189 697-890 14-210 (254)
144 KOG1525 Sister chromatid cohes 96.8 4.6 0.0001 56.0 51.9 173 1343-1519 253-435 (1266)
145 KOG2022 Nuclear transport rece 96.6 4.3 9.3E-05 52.5 62.2 266 672-984 439-756 (982)
146 PF13001 Ecm29: Proteasome sta 96.5 1.5 3.4E-05 56.1 30.2 97 848-944 15-113 (501)
147 PF12719 Cnd3: Nuclear condens 96.5 0.38 8.3E-06 57.3 23.4 128 1531-1658 5-144 (298)
148 PF12719 Cnd3: Nuclear condens 96.5 0.14 3E-06 61.0 19.6 155 1627-1785 25-188 (298)
149 KOG0567 HEAT repeat-containing 96.5 0.18 3.9E-06 55.6 17.9 231 1124-1421 38-282 (289)
150 COG5116 RPN2 26S proteasome re 96.4 0.087 1.9E-06 63.0 16.6 283 433-751 392-677 (926)
151 PF13001 Ecm29: Proteasome sta 96.4 1.2 2.6E-05 57.2 28.4 209 710-966 219-447 (501)
152 PF02985 HEAT: HEAT repeat; I 96.4 0.0041 8.9E-08 45.3 3.7 30 737-766 1-30 (31)
153 KOG4413 26S proteasome regulat 96.3 2.6 5.7E-05 47.7 30.3 96 670-765 53-157 (524)
154 KOG2025 Chromosome condensatio 96.3 4.9 0.00011 50.6 46.9 206 653-882 81-291 (892)
155 PF01347 Vitellogenin_N: Lipop 96.2 0.19 4.2E-06 67.1 21.2 193 617-832 397-612 (618)
156 KOG0946 ER-Golgi vesicle-tethe 96.2 6.1 0.00013 50.4 37.5 193 1215-1422 36-244 (970)
157 PF05918 API5: Apoptosis inhib 96.2 1.5 3.3E-05 55.2 26.3 138 898-1043 27-164 (556)
158 KOG2025 Chromosome condensatio 96.2 5.9 0.00013 49.9 47.4 225 674-921 59-291 (892)
159 PF03378 CAS_CSE1: CAS/CSE pro 96.1 1.1 2.3E-05 55.9 25.0 297 848-1212 18-349 (435)
160 PF10274 ParcG: Parkin co-regu 96.1 0.063 1.4E-06 56.9 11.7 116 892-1008 36-169 (183)
161 KOG2137 Protein kinase [Signal 96.0 0.19 4.1E-06 63.3 17.4 188 588-783 286-476 (700)
162 KOG1949 Uncharacterized conser 96.0 0.35 7.6E-06 59.8 19.0 151 813-964 174-333 (1005)
163 PLN03076 ARF guanine nucleotid 96.0 16 0.00035 53.3 40.7 198 809-1007 1133-1380(1780)
164 PF08506 Cse1: Cse1; InterPro 95.9 0.38 8.3E-06 58.5 19.4 142 571-718 210-369 (370)
165 COG5218 YCG1 Chromosome conden 95.9 6.6 0.00014 48.2 42.6 174 810-999 88-262 (885)
166 KOG1993 Nuclear transport rece 95.8 8.6 0.00019 49.2 61.0 320 1092-1420 408-770 (978)
167 KOG1293 Proteins containing ar 95.8 8.2 0.00018 48.5 31.4 440 641-1115 34-538 (678)
168 PLN03076 ARF guanine nucleotid 95.7 3.3 7.2E-05 59.8 29.8 296 1526-1822 1109-1488(1780)
169 PF02985 HEAT: HEAT repeat; I 95.7 0.016 3.5E-07 42.2 3.9 28 697-724 2-29 (31)
170 PF12231 Rif1_N: Rap1-interact 95.6 8 0.00017 47.7 29.4 234 631-890 61-308 (372)
171 PF05536 Neurochondrin: Neuroc 95.5 12 0.00025 48.5 31.5 232 697-930 7-267 (543)
172 KOG1517 Guanine nucleotide bin 95.5 0.19 4E-06 64.9 14.7 218 1566-1784 486-734 (1387)
173 PF08506 Cse1: Cse1; InterPro 95.5 0.44 9.6E-06 57.9 17.5 128 1094-1226 224-370 (370)
174 PF03378 CAS_CSE1: CAS/CSE pro 95.5 0.59 1.3E-05 58.1 18.9 255 1543-1804 19-295 (435)
175 PF13251 DUF4042: Domain of un 95.4 0.14 3E-06 54.9 11.5 136 1525-1660 2-177 (182)
176 PF13251 DUF4042: Domain of un 95.4 0.14 2.9E-06 55.0 11.3 135 632-766 2-175 (182)
177 KOG2933 Uncharacterized conser 95.4 0.17 3.6E-06 57.2 12.1 136 627-768 99-237 (334)
178 smart00638 LPD_N Lipoprotein N 95.1 1.8 3.9E-05 57.3 23.4 193 617-832 359-568 (574)
179 PF08167 RIX1: rRNA processing 95.1 0.62 1.3E-05 49.9 15.4 76 1345-1420 21-98 (165)
180 cd00256 VATPase_H VATPase_H, r 94.6 13 0.00028 45.9 26.5 281 861-1150 106-424 (429)
181 cd00256 VATPase_H VATPase_H, r 94.4 11 0.00024 46.5 25.5 298 699-1002 105-424 (429)
182 KOG2137 Protein kinase [Signal 94.4 1.1 2.4E-05 56.7 17.0 223 754-983 291-517 (700)
183 PF12530 DUF3730: Protein of u 94.3 7.4 0.00016 44.4 22.5 201 1511-1724 3-218 (234)
184 KOG1851 Uncharacterized conser 94.2 36 0.00078 47.5 33.8 172 1330-1542 1506-1682(1710)
185 PF11865 DUF3385: Domain of un 94.1 0.52 1.1E-05 50.0 11.8 108 1548-1656 8-156 (160)
186 COG5095 TAF6 Transcription ini 94.1 1.1 2.3E-05 50.0 14.0 150 572-725 195-360 (450)
187 cd08050 TAF6 TATA Binding Prot 94.1 0.55 1.2E-05 56.7 13.4 90 831-922 235-338 (343)
188 KOG2160 Armadillo/beta-catenin 94.1 1.1 2.4E-05 52.2 15.0 178 1521-1698 95-285 (342)
189 PF11865 DUF3385: Domain of un 94.1 0.32 7E-06 51.5 10.1 147 734-886 8-158 (160)
190 KOG4524 Uncharacterized conser 93.8 32 0.00069 45.6 38.5 75 695-769 278-352 (1014)
191 COG5095 TAF6 Transcription ini 93.7 0.96 2.1E-05 50.3 12.9 111 1486-1597 256-383 (450)
192 COG5234 CIN1 Beta-tubulin fold 93.7 19 0.0004 45.5 24.7 168 869-1040 209-415 (993)
193 PF08167 RIX1: rRNA processing 93.6 1.8 4E-05 46.3 15.0 135 1469-1635 28-162 (165)
194 KOG1949 Uncharacterized conser 93.6 10 0.00022 47.7 22.4 164 540-708 177-354 (1005)
195 PF11864 DUF3384: Domain of un 93.5 30 0.00065 44.2 32.8 146 734-888 174-334 (464)
196 KOG4524 Uncharacterized conser 93.4 36 0.00079 45.1 44.3 275 1291-1582 569-879 (1014)
197 PF12231 Rif1_N: Rap1-interact 93.3 26 0.00057 43.2 31.9 310 1479-1822 6-351 (372)
198 COG5656 SXM1 Importin, protein 93.3 32 0.0007 44.0 61.8 383 1312-1729 461-883 (970)
199 PF08623 TIP120: TATA-binding 93.0 1.6 3.5E-05 46.1 12.8 95 651-746 3-116 (169)
200 KOG2081 Nuclear transport regu 92.5 36 0.00077 42.5 37.1 310 852-1188 149-494 (559)
201 KOG2122 Beta-catenin-binding p 92.4 23 0.00049 48.7 24.3 73 1753-1825 530-603 (2195)
202 KOG2022 Nuclear transport rece 91.9 53 0.0011 43.2 68.2 339 1363-1740 481-869 (982)
203 PF12054 DUF3535: Domain of un 91.9 19 0.00041 45.3 22.6 78 671-748 101-180 (441)
204 PF04118 Dopey_N: Dopey, N-ter 91.8 28 0.0006 41.2 22.5 214 579-799 15-251 (307)
205 PF08064 UME: UME (NUC010) dom 91.7 1.5 3.3E-05 42.9 10.2 77 906-983 26-105 (107)
206 PF10363 DUF2435: Protein of u 91.7 1.1 2.3E-05 42.4 8.8 82 1350-1432 4-85 (92)
207 PF12074 DUF3554: Domain of un 91.5 8.6 0.00019 46.9 19.1 95 1123-1217 23-122 (339)
208 PF10521 DUF2454: Protein of u 91.4 4.9 0.00011 47.4 16.1 142 846-987 109-278 (282)
209 PF10521 DUF2454: Protein of u 91.3 3.9 8.4E-05 48.2 15.2 150 1489-1640 99-277 (282)
210 KOG1517 Guanine nucleotide bin 91.3 3.2 6.9E-05 54.3 14.8 148 1467-1619 513-675 (1387)
211 KOG2549 Transcription initiati 91.2 6.6 0.00014 48.4 16.6 145 572-725 205-371 (576)
212 KOG1851 Uncharacterized conser 91.1 86 0.0019 44.1 34.8 148 854-1003 1524-1678(1710)
213 PF04118 Dopey_N: Dopey, N-ter 90.8 41 0.00089 39.8 25.1 181 657-842 54-254 (307)
214 smart00638 LPD_N Lipoprotein N 90.7 11 0.00024 49.9 20.4 128 1679-1824 410-543 (574)
215 PF12054 DUF3535: Domain of un 90.7 7.9 0.00017 48.6 17.7 76 1137-1212 102-178 (441)
216 PF10363 DUF2435: Protein of u 90.0 1.6 3.5E-05 41.2 8.3 85 697-786 5-89 (92)
217 PF08064 UME: UME (NUC010) dom 89.8 2.4 5.2E-05 41.5 9.7 86 615-702 11-99 (107)
218 PF01347 Vitellogenin_N: Lipop 89.8 13 0.00027 49.9 20.2 126 825-959 447-586 (618)
219 KOG1823 DRIM (Down-regulated i 89.7 1.1E+02 0.0023 43.0 48.6 376 1378-1804 795-1179(1364)
220 PF12074 DUF3554: Domain of un 89.7 15 0.00032 44.9 18.9 190 1547-1741 19-238 (339)
221 PF08161 NUC173: NUC173 domain 89.7 3.6 7.7E-05 45.3 11.9 176 821-1001 8-197 (198)
222 COG5098 Chromosome condensatio 89.6 70 0.0015 40.6 61.8 97 1711-1818 935-1032(1128)
223 cd08050 TAF6 TATA Binding Prot 89.4 4.7 0.0001 48.8 13.9 144 571-723 175-339 (343)
224 PF05536 Neurochondrin: Neuroc 89.2 83 0.0018 40.9 37.2 188 1325-1544 71-267 (543)
225 KOG2160 Armadillo/beta-catenin 89.1 6.4 0.00014 46.2 13.8 111 1469-1579 127-240 (342)
226 KOG2549 Transcription initiati 89.0 10 0.00022 46.9 15.8 166 1469-1640 210-395 (576)
227 KOG1222 Kinesin associated pro 88.9 63 0.0014 39.2 25.5 92 694-787 303-399 (791)
228 KOG2021 Nuclear mRNA export fa 88.7 86 0.0019 40.5 62.4 123 1088-1211 447-585 (980)
229 smart00802 UME Domain in UVSB 88.5 3.7 7.9E-05 40.0 9.7 87 895-982 12-104 (107)
230 PF01603 B56: Protein phosphat 88.0 27 0.00059 43.6 19.6 232 1586-1826 133-373 (409)
231 PF01603 B56: Protein phosphat 87.9 11 0.00025 46.9 16.2 100 1478-1582 267-373 (409)
232 KOG2973 Uncharacterized conser 87.0 37 0.0008 39.1 17.4 101 740-842 7-111 (353)
233 KOG2149 Uncharacterized conser 86.7 5.3 0.00011 47.6 11.4 114 1126-1239 62-178 (393)
234 PF11864 DUF3384: Domain of un 86.6 1.1E+02 0.0023 39.3 35.2 129 630-764 191-329 (464)
235 KOG3961 Uncharacterized conser 86.6 1.3 2.8E-05 47.2 5.7 89 1465-1555 113-204 (262)
236 KOG4500 Rho/Rac GTPase guanine 86.3 84 0.0018 37.8 28.9 73 1667-1739 316-391 (604)
237 PF12530 DUF3730: Protein of u 84.9 66 0.0014 36.7 19.2 205 659-869 2-216 (234)
238 PF14664 RICTOR_N: Rapamycin-i 84.9 31 0.00067 42.3 17.4 183 1640-1827 80-273 (371)
239 KOG4500 Rho/Rac GTPase guanine 84.7 1E+02 0.0022 37.3 28.3 76 694-769 314-394 (604)
240 KOG0803 Predicted E3 ubiquitin 84.6 33 0.00072 48.2 19.0 93 909-1001 55-151 (1312)
241 PF00514 Arm: Armadillo/beta-c 84.5 1.4 3.1E-05 34.4 3.9 29 736-764 12-40 (41)
242 KOG2149 Uncharacterized conser 84.4 15 0.00032 43.9 13.6 133 1350-1517 59-191 (393)
243 PF03224 V-ATPase_H_N: V-ATPas 84.4 1E+02 0.0022 37.1 22.3 63 1361-1423 69-138 (312)
244 smart00802 UME Domain in UVSB 84.3 7.3 0.00016 38.0 9.3 85 615-701 11-98 (107)
245 KOG0803 Predicted E3 ubiquitin 83.7 29 0.00062 48.8 17.9 108 1120-1228 39-150 (1312)
246 PF08389 Xpo1: Exportin 1-like 82.8 7 0.00015 40.9 9.7 115 672-787 3-139 (148)
247 KOG1048 Neural adherens juncti 82.4 1.7E+02 0.0037 38.5 22.6 132 1094-1229 532-682 (717)
248 PF08161 NUC173: NUC173 domain 80.9 25 0.00055 38.7 13.1 65 714-778 19-83 (198)
249 KOG4199 Uncharacterized conser 80.1 1.3E+02 0.0028 35.2 24.1 157 576-767 285-446 (461)
250 PF08569 Mo25: Mo25-like; Int 79.9 1.5E+02 0.0032 35.8 22.7 192 856-1112 76-285 (335)
251 PF08767 CRM1_C: CRM1 C termin 79.7 33 0.00071 41.2 14.8 137 871-1007 42-198 (319)
252 cd03572 ENTH_epsin_related ENT 79.7 16 0.00036 36.4 10.0 83 918-1001 24-117 (122)
253 PF03224 V-ATPase_H_N: V-ATPas 79.3 69 0.0015 38.5 17.6 148 696-843 106-270 (312)
254 PF14664 RICTOR_N: Rapamycin-i 78.8 1.7E+02 0.0037 36.0 22.5 216 1558-1787 34-274 (371)
255 cd03568 VHS_STAM VHS domain fa 78.5 19 0.00042 37.4 10.7 76 694-769 36-114 (144)
256 PF12830 Nipped-B_C: Sister ch 76.6 23 0.00051 38.8 11.4 79 1707-1792 6-84 (187)
257 PF14225 MOR2-PAG1_C: Cell mor 76.5 1.6E+02 0.0034 34.3 22.7 170 809-986 60-240 (262)
258 PF08389 Xpo1: Exportin 1-like 74.6 30 0.00066 36.0 11.5 124 590-719 3-148 (148)
259 KOG1837 Uncharacterized conser 74.3 4.1E+02 0.0088 38.0 49.7 226 1333-1577 1371-1609(1621)
260 PF08767 CRM1_C: CRM1 C termin 74.2 69 0.0015 38.5 15.5 115 635-749 91-227 (319)
261 PF14222 MOR2-PAG1_N: Cell mor 73.8 2.9E+02 0.0062 36.1 29.7 318 813-1154 129-503 (552)
262 PF14631 FancD2: Fanconi anaem 73.0 2.5E+02 0.0054 41.0 22.6 159 728-888 427-586 (1426)
263 KOG2122 Beta-catenin-binding p 73.0 2.8E+02 0.0062 39.1 20.9 151 1466-1618 394-562 (2195)
264 PF08713 DNA_alkylation: DNA a 71.4 47 0.001 37.3 12.7 138 578-732 54-192 (213)
265 PF11698 V-ATPase_H_C: V-ATPas 70.7 18 0.00039 35.9 7.6 67 1550-1616 43-116 (119)
266 PF07539 DRIM: Down-regulated 70.7 18 0.00039 37.4 8.0 81 736-822 17-97 (141)
267 cd03572 ENTH_epsin_related ENT 70.5 35 0.00075 34.2 9.6 75 1345-1419 34-119 (122)
268 cd03567 VHS_GGA VHS domain fam 70.4 47 0.001 34.3 10.9 75 694-768 37-119 (139)
269 PF12765 Cohesin_HEAT: HEAT re 69.7 5.2 0.00011 31.6 3.0 39 719-759 3-41 (42)
270 PF11698 V-ATPase_H_C: V-ATPas 69.6 15 0.00031 36.5 6.7 57 708-765 57-115 (119)
271 cd03568 VHS_STAM VHS domain fa 69.5 76 0.0016 33.1 12.4 80 1344-1423 32-114 (144)
272 cd03561 VHS VHS domain family; 69.2 45 0.00097 34.2 10.7 78 692-769 34-116 (133)
273 COG5098 Chromosome condensatio 68.1 3.6E+02 0.0077 34.8 61.5 141 1466-1615 892-1037(1128)
274 PF09324 DUF1981: Domain of un 67.8 17 0.00038 33.9 6.6 70 1506-1575 15-84 (86)
275 KOG1848 Uncharacterized conser 67.5 2.2E+02 0.0048 39.8 18.5 110 655-765 995-1132(1610)
276 KOG2213 Apoptosis inhibitor 5/ 67.3 2.8E+02 0.0061 33.3 23.1 54 1522-1579 37-90 (460)
277 KOG1048 Neural adherens juncti 66.4 58 0.0013 42.4 12.8 149 615-764 518-683 (717)
278 KOG2973 Uncharacterized conser 66.4 2.6E+02 0.0057 32.6 19.6 66 1720-1787 255-320 (353)
279 PF08146 BP28CT: BP28CT (NUC21 65.9 38 0.00083 35.7 9.5 76 1326-1401 36-119 (153)
280 cd03569 VHS_Hrs_Vps27p VHS dom 65.8 55 0.0012 34.0 10.5 76 694-769 40-118 (142)
281 KOG4199 Uncharacterized conser 65.2 2.8E+02 0.0061 32.6 27.3 149 1632-1821 287-442 (461)
282 PF12830 Nipped-B_C: Sister ch 64.7 46 0.001 36.5 10.4 78 655-736 6-86 (187)
283 KOG1837 Uncharacterized conser 64.2 6.4E+02 0.014 36.3 34.7 63 1120-1182 1539-1604(1621)
284 PF08713 DNA_alkylation: DNA a 64.0 62 0.0014 36.3 11.8 145 1627-1794 50-196 (213)
285 PF11919 DUF3437: Domain of un 62.3 9.5 0.00021 35.8 3.7 58 710-768 4-61 (90)
286 PF12726 SEN1_N: SEN1 N termin 61.9 5.6E+02 0.012 35.0 35.6 126 1706-1838 438-565 (727)
287 PF00514 Arm: Armadillo/beta-c 60.5 16 0.00035 28.5 4.2 29 657-685 12-40 (41)
288 KOG1877 Putative transmembrane 59.2 2.3E+02 0.0049 37.9 16.3 287 1078-1376 14-327 (819)
289 COG5234 CIN1 Beta-tubulin fold 58.9 5.2E+02 0.011 33.6 26.1 135 655-792 244-405 (993)
290 cd00197 VHS_ENTH_ANTH VHS, ENT 58.9 58 0.0013 32.4 9.1 72 692-763 34-113 (115)
291 PF04388 Hamartin: Hamartin pr 58.5 56 0.0012 43.5 11.3 156 1392-1559 6-161 (668)
292 PF07571 DUF1546: Protein of u 58.3 38 0.00082 32.2 7.1 57 1521-1577 18-76 (92)
293 smart00185 ARM Armadillo/beta- 58.1 13 0.00028 28.7 3.4 29 736-764 12-40 (41)
294 KOG3961 Uncharacterized conser 58.0 22 0.00047 38.4 5.8 87 694-780 113-205 (262)
295 KOG1848 Uncharacterized conser 57.0 4.6E+02 0.01 37.0 18.6 240 1598-1839 854-1149(1610)
296 PF00790 VHS: VHS domain; Int 56.5 2.1E+02 0.0046 29.6 13.0 90 1751-1840 40-135 (140)
297 PF08569 Mo25: Mo25-like; Int 56.4 4.4E+02 0.0095 31.9 24.9 189 1201-1421 75-285 (335)
298 PF11701 UNC45-central: Myosin 56.3 60 0.0013 34.4 9.1 117 668-784 16-138 (157)
299 PF00790 VHS: VHS domain; Int 56.2 68 0.0015 33.3 9.3 92 1142-1234 25-121 (140)
300 KOG2199 Signal transducing ada 56.1 77 0.0017 37.6 10.2 91 692-782 42-135 (462)
301 cd07064 AlkD_like_1 A new stru 55.5 2.7E+02 0.0059 31.1 14.6 145 1628-1794 46-191 (208)
302 smart00288 VHS Domain present 54.4 1E+02 0.0022 31.6 10.1 76 693-768 35-114 (133)
303 KOG2213 Apoptosis inhibitor 5/ 54.2 4.7E+02 0.01 31.6 26.8 264 1363-1660 38-317 (460)
304 PF11701 UNC45-central: Myosin 54.2 41 0.00088 35.7 7.4 128 552-681 20-154 (157)
305 KOG1877 Putative transmembrane 54.1 2.6E+02 0.0056 37.4 15.5 80 705-784 66-150 (819)
306 KOG2011 Sister chromatid cohes 52.9 8.2E+02 0.018 34.0 21.0 71 694-766 281-356 (1048)
307 PF14225 MOR2-PAG1_C: Cell mor 52.4 4.3E+02 0.0094 30.7 20.3 162 732-905 60-239 (262)
308 KOG1823 DRIM (Down-regulated i 51.6 9.5E+02 0.021 34.4 47.3 177 810-991 804-989 (1364)
309 PF12765 Cohesin_HEAT: HEAT re 50.5 26 0.00057 27.7 3.9 24 657-680 18-41 (42)
310 PF07571 DUF1546: Protein of u 49.8 49 0.0011 31.4 6.4 58 1092-1149 17-76 (92)
311 PF14631 FancD2: Fanconi anaem 49.5 1.1E+03 0.024 34.6 32.5 84 650-733 428-511 (1426)
312 PF12333 Ipi1_N: Rix1 complex 49.4 85 0.0018 30.5 8.1 59 848-906 3-65 (102)
313 KOG2011 Sister chromatid cohes 48.6 9.4E+02 0.02 33.5 21.9 214 657-881 200-431 (1048)
314 PF08146 BP28CT: BP28CT (NUC21 47.8 1.5E+02 0.0032 31.3 10.2 70 916-985 42-119 (153)
315 KOG2005 26S proteasome regulat 47.5 6.9E+02 0.015 32.4 16.8 305 692-1019 412-720 (878)
316 cd03569 VHS_Hrs_Vps27p VHS dom 47.0 3.3E+02 0.0071 28.4 12.5 80 1344-1423 36-118 (142)
317 cd03567 VHS_GGA VHS domain fam 46.9 2.7E+02 0.0058 28.9 11.6 74 932-1005 37-118 (139)
318 KOG3723 PH domain protein Melt 46.8 5.3E+02 0.011 32.5 15.4 75 1529-1608 182-259 (851)
319 cd03561 VHS VHS domain family; 46.4 1.8E+02 0.0038 29.9 10.4 77 1159-1235 36-116 (133)
320 smart00288 VHS Domain present 46.4 2.9E+02 0.0063 28.3 11.9 79 1344-1422 32-114 (133)
321 PF14222 MOR2-PAG1_N: Cell mor 44.6 8.5E+02 0.018 31.8 21.3 214 1603-1822 9-248 (552)
322 smart00567 EZ_HEAT E-Z type HE 43.2 23 0.00049 25.4 2.4 29 709-747 1-29 (30)
323 cd00197 VHS_ENTH_ANTH VHS, ENT 43.1 1.8E+02 0.0038 29.0 9.6 46 929-974 33-78 (115)
324 PF09324 DUF1981: Domain of un 41.5 82 0.0018 29.5 6.4 69 615-683 17-85 (86)
325 KOG3687 Tuberin - Rap/ran-GTPa 40.0 1.1E+03 0.024 32.0 20.4 33 616-648 68-100 (1697)
326 PF12333 Ipi1_N: Rix1 complex 39.5 78 0.0017 30.8 6.2 63 1499-1562 2-65 (102)
327 cd06561 AlkD_like A new struct 39.5 5.5E+02 0.012 28.1 18.5 66 618-689 108-173 (197)
328 KOG2759 Vacuolar H+-ATPase V1 39.3 8.2E+02 0.018 30.1 26.0 67 1550-1616 366-439 (442)
329 KOG4541 Nuclear transport rece 38.9 6.9E+02 0.015 31.5 14.8 168 1463-1634 555-735 (748)
330 cd03565 VHS_Tom1 VHS domain fa 38.6 2.8E+02 0.006 28.8 10.4 76 694-769 37-119 (141)
331 PF12612 TFCD_C: Tubulin foldi 38.5 4.9E+02 0.011 28.7 13.1 125 1120-1251 5-138 (193)
332 COG5231 VMA13 Vacuolar H+-ATPa 37.7 7.4E+02 0.016 29.1 19.5 71 933-1003 356-428 (432)
333 PF03130 HEAT_PBS: PBS lyase H 37.1 22 0.00048 24.9 1.5 25 752-783 1-25 (27)
334 PF03542 Tuberin: Tuberin; In 34.6 9.3E+02 0.02 29.4 15.6 126 615-746 141-286 (356)
335 PF07539 DRIM: Down-regulated 33.9 2.2E+02 0.0047 29.6 8.7 82 1549-1637 16-97 (141)
336 COG5101 CRM1 Importin beta-rel 33.2 1.2E+03 0.025 30.1 47.3 228 296-567 16-262 (1053)
337 KOG2199 Signal transducing ada 33.2 3.8E+02 0.0083 32.2 11.1 94 1345-1438 41-137 (462)
338 PF12612 TFCD_C: Tubulin foldi 32.4 3.8E+02 0.0083 29.5 11.1 43 1505-1549 4-46 (193)
339 cd07064 AlkD_like_1 A new stru 31.9 7.6E+02 0.017 27.6 14.4 104 617-731 82-186 (208)
340 PF11841 DUF3361: Domain of un 31.3 6.6E+02 0.014 26.7 11.7 132 1711-1846 13-153 (160)
341 KOG2038 CAATT-binding transcri 30.5 1.4E+03 0.031 30.3 28.8 106 695-806 304-413 (988)
342 PF14668 RICTOR_V: Rapamycin-i 30.2 1.2E+02 0.0026 27.4 5.3 56 591-646 3-59 (73)
343 PF09759 Atx10homo_assoc: Spin 28.7 2.5E+02 0.0054 27.3 7.4 66 712-780 3-72 (102)
344 PF12397 U3snoRNP10: U3 small 28.1 3.3E+02 0.0072 27.3 8.9 73 1750-1825 3-76 (121)
345 KOG0929 Guanine nucleotide exc 28.0 2.2E+03 0.047 31.6 20.0 118 666-783 1183-1320(1514)
346 PF11919 DUF3437: Domain of un 27.5 1.1E+02 0.0024 28.9 4.8 58 1769-1827 5-62 (90)
347 KOG0929 Guanine nucleotide exc 27.5 2E+03 0.043 31.9 18.3 127 1085-1211 1178-1320(1514)
348 PF12783 Sec7_N: Guanine nucle 27.2 6.9E+02 0.015 26.7 11.8 95 630-724 36-146 (168)
349 PF14961 BROMI: Broad-minded p 27.2 2E+03 0.043 30.9 17.9 57 1684-1740 177-233 (1296)
350 PF14676 FANCI_S2: FANCI solen 27.1 7.8E+02 0.017 26.2 12.2 118 1100-1226 37-156 (158)
351 smart00185 ARM Armadillo/beta- 27.1 92 0.002 23.8 3.7 28 814-841 13-40 (41)
352 PF12726 SEN1_N: SEN1 N termin 26.8 1.8E+03 0.038 30.2 35.7 114 1305-1422 435-556 (727)
353 PF14228 MOR2-PAG1_mid: Cell m 26.3 2.1E+03 0.046 30.9 29.9 113 1667-1788 504-617 (1120)
354 PF14868 DUF4487: Domain of un 25.8 1.6E+03 0.034 29.3 26.2 88 1145-1232 464-553 (559)
355 cd06561 AlkD_like A new struct 25.3 9.1E+02 0.02 26.3 16.9 78 1712-1797 108-185 (197)
356 cd03565 VHS_Tom1 VHS domain fa 25.0 7.9E+02 0.017 25.5 11.3 74 932-1005 37-117 (141)
357 PF04078 Rcd1: Cell differenti 24.4 5.2E+02 0.011 29.7 10.1 158 616-785 96-262 (262)
358 PF12397 U3snoRNP10: U3 small 23.9 6.5E+02 0.014 25.2 10.1 72 1546-1617 2-76 (121)
359 KOG2759 Vacuolar H+-ATPase V1 23.8 1.4E+03 0.031 28.1 24.0 71 1708-1782 365-438 (442)
360 PF04869 Uso1_p115_head: Uso1 23.7 4.2E+02 0.0092 31.7 9.9 70 696-765 156-231 (312)
361 PF04388 Hamartin: Hamartin pr 23.5 1E+03 0.022 31.9 14.5 150 1586-1760 4-159 (668)
362 cd00872 PI3Ka_I Phosphoinositi 23.3 1.7E+02 0.0037 31.5 5.9 78 695-785 39-116 (171)
363 PF10350 DUF2428: Putative dea 23.2 8.2E+02 0.018 28.3 12.1 161 708-870 60-254 (255)
364 PF14911 MMS22L_C: S-phase gen 22.7 1.5E+03 0.032 27.9 18.7 37 1387-1423 66-102 (373)
365 KOG3067 Translin family protei 22.6 1.7E+02 0.0038 31.0 5.5 35 78-112 10-44 (226)
366 PF04510 DUF577: Family of unk 22.6 7.1E+02 0.015 26.7 9.9 123 1708-1841 2-135 (174)
367 PF06371 Drf_GBD: Diaphanous G 21.8 4.5E+02 0.0097 28.5 9.4 59 1091-1150 126-186 (187)
368 COG5537 IRR1 Cohesin [Cell div 21.8 1.8E+03 0.039 28.6 20.9 63 1089-1151 322-386 (740)
369 COG5657 CSE1 CAS/CSE protein i 21.7 2.2E+03 0.047 29.4 40.8 106 299-412 9-131 (947)
370 KOG2038 CAATT-binding transcri 21.0 2.1E+03 0.045 28.9 29.7 144 572-727 228-373 (988)
371 KOG4346 Uncharacterized conser 20.9 2E+03 0.043 28.7 16.8 102 1510-1618 510-621 (849)
372 KOG0889 Histone acetyltransfer 20.8 3.9E+03 0.084 32.0 81.0 1077 675-1807 26-1331(3550)
373 COG4912 Predicted DNA alkylati 20.4 3.7E+02 0.008 29.9 7.7 67 694-766 117-184 (222)
374 COG5369 Uncharacterized conser 20.2 3.2E+02 0.0069 34.3 7.8 132 753-885 406-545 (743)
No 1
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-55 Score=517.33 Aligned_cols=561 Identities=50% Similarity=0.755 Sum_probs=526.6
Q ss_pred HHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHH
Q 000201 438 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 517 (1866)
Q Consensus 438 l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~a 517 (1866)
++..+..+...+....+.|+++.+ +|+.+.||..|++++..+++.||.+....++|.||+.|++.. ++.+|++.
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~-----~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLH-----NDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccch-----hHHHhhhh
Confidence 444445555444445588888767 999999999999999999999999999999999999998733 47899999
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHH
Q 000201 518 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 597 (1866)
Q Consensus 518 v~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~ 597 (1866)
+...|.++.|+...|++...++.++++.+.+|++.+|.+++.|+++++..........+..++..+++..+...|+++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887766666666666777777888899999999
Q ss_pred HHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHH
Q 000201 598 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 677 (1866)
Q Consensus 598 ~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a 677 (1866)
++++++++.|...+++..++..+.+++.++++..+|+++++++...+..+|..|+||+..++|.++.+++|....||+++
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHH
Q 000201 678 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 757 (1866)
Q Consensus 678 ~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~ 757 (1866)
.++.+.++..+++++++.++|.++..+.+..||++.++++.+|.|++++|++++.+++.++|.+.+.+.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000201 758 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 837 (1866)
Q Consensus 758 ~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l 837 (1866)
.||..++..+.|++|+.++|.|++++.||..++.+|++.|..++|++++++|+++.++|++.+++.+++...++.++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHH
Q 000201 838 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 917 (1866)
Q Consensus 838 ~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~ 917 (1866)
+|++..+.+++++.||++.++|++...+.|+.|++|..+.++|+.+.+.+|..+|++..|++.+.+.++.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHH
Q 000201 918 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 995 (1866)
Q Consensus 918 ~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~ 995 (1866)
.+++++...|.++..++++.+....... ++.+|++.+++|..++..+|..|++|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999887665 67799999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 000201 996 GAGHVLVEH 1004 (1866)
Q Consensus 996 ~al~~i~~~ 1004 (1866)
++...+..+
T Consensus 557 ~~~~~~~~~ 565 (569)
T KOG1242|consen 557 EAGEVEVLN 565 (569)
T ss_pred hhhhhhhcc
Confidence 887766543
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=5.8e-49 Score=467.74 Aligned_cols=1046 Identities=17% Similarity=0.194 Sum_probs=747.4
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
.+++.|.+++-..|++|+.-|..-.......+ ....+.++..++++|.|.+++|++.|++|++.+++.++...++.++.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 57788888888889988877665444433322 23456889999999999999999999999999999998888899999
Q ss_pred HHHHhhCCCChhHHH----HHHHHHh-cc-cc-ccCCcchhhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhhcCCCc
Q 000201 778 TLLMGLTDPNDHTKY----SLDILLQ-TT-FV-NTVDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr~----al~~L~~-~~-~~-~~~~~~~l~~l~p~L~~~l~--d~~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
.|+..+-...+..|. ++.+.+. .. ++ ..........+.|.+..++. +....++..++++++.+...+++
T Consensus 89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~-- 166 (1233)
T KOG1824|consen 89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT-- 166 (1233)
T ss_pred HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc--
Confidence 998886655555552 4444433 11 11 12333445566666666553 34556899999999988887665
Q ss_pred chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 849 ~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
-+.++...++..+...+..+...||+.++.+||.++...+.+.+.+++..|...|.+.......+..+++|+.++++.|.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 45567788888888889999999999999999999999998889999999999998877666677889999999999998
Q ss_pred h---HHHHHHHHHHHHh---ccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CCCh-------------
Q 000201 929 V---YFEHILPDIIRNC---SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENE------------- 988 (1866)
Q Consensus 929 ~---~l~~ll~~l~~~l---~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~------------- 988 (1866)
. +++.++|.+.+.+ +..+.++|+.++++++.+...++.++.||.+.++..++++++ |+|.
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 6 6788999999988 567899999999999999999999999999999999999886 2211
Q ss_pred --------------------HHHHHHHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcC
Q 000201 989 --------------------SVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1045 (1866)
Q Consensus 989 --------------------~VR~~a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~ 1045 (1866)
.||.+|++++..++..-.+- ....+-|.+...+++....|+...+...-.++.+.+.
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 14444444444333211100 0111223333333333333444444444333333222
Q ss_pred CcccccccCCCCCCCc---chHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH
Q 000201 1046 TSGKALLEGGSDDEGA---STEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1122 (1866)
Q Consensus 1046 ~~~~~~~~~~~ed~~~---~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~ 1122 (1866)
... ...|.|.. +.......+.+ ....++..+-..+.+.+...|+.++..|..++...|..+.++++.
T Consensus 407 ~~~-----~~~d~d~~e~~g~~s~~~~L~~-----~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~s 476 (1233)
T KOG1824|consen 407 VIE-----VLADNDAMEQGGTPSDLSMLSD-----QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPS 476 (1233)
T ss_pred Ccc-----cccCchhhhccCCccchHHHHh-----hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccc
Confidence 111 00011110 00000011111 112344444444556666789999999999999999999999999
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhch---
Q 000201 1123 LMNTLISSLASS--SSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--- 1193 (1866)
Q Consensus 1123 l~~~L~~~l~~~--~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~--- 1193 (1866)
+++.+...+.+. ....+..+..++.......+++ ..+.+.|.+.....++.+.+-.+++..+.+++....+
T Consensus 477 lvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~ 556 (1233)
T KOG1824|consen 477 LVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQP 556 (1233)
T ss_pred cchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCC
Confidence 999999999865 4567888888887777666664 4567778888888899999988888888887766543
Q ss_pred ---hhHHhhHhhHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHH
Q 000201 1194 ---SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQI 1265 (1866)
Q Consensus 1194 ---~~l~~~l~~ll~~l~~~L--~d~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~i 1265 (1866)
....+|..+++....+.+ .|.|.+||+.|..++|.+...+|.. ....++|.+++.|.++.++-.+..++..+
T Consensus 557 ~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 557 PSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLI 636 (1233)
T ss_pred CccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 234678888888877765 4789999999999999998888753 23445777777777766554444444333
Q ss_pred hhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch-
Q 000201 1266 LSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE- 1344 (1866)
Q Consensus 1266 l~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~- 1344 (1866)
... ...-.+.+.+..+++.+..++.......|.....++..++.+++.
T Consensus 637 a~S-------------------------------~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~ 685 (1233)
T KOG1824|consen 637 AMS-------------------------------PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS 685 (1233)
T ss_pred Hhc-------------------------------cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 211 112235677888999999999888888999999999999887654
Q ss_pred ---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHH----H
Q 000201 1345 ---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR----V 1417 (1866)
Q Consensus 1345 ---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~----l 1417 (1866)
..+..++.++...+...+..+-+.|+.++..++...+.........+++.++.++..+- +...|..++-. +
T Consensus 686 ~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~al 763 (1233)
T KOG1824|consen 686 IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQAL 763 (1233)
T ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHH
Confidence 34777888888888888889999999999999888777777778889999999887653 33333333322 2
Q ss_pred HhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccC-CHHHHHHHHHHHHHHHhh
Q 000201 1418 VASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEV 1496 (1866)
Q Consensus 1418 ~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~-~~~~r~~a~~~L~~l~~~ 1496 (1866)
+..... .++ +...+ ..+. .+ +.+ ....+ ........+.|.+.++..
T Consensus 764 V~t~~~-~l~-y~~l~-s~lt------------~P--V~~----------------~~~~~l~kqa~~siA~cvA~Lt~~ 810 (1233)
T KOG1824|consen 764 VITKEP-DLD-YISLL-SLLT------------AP--VYE----------------QVTDGLHKQAYYSIAKCVAALTCA 810 (1233)
T ss_pred HhcCCC-Ccc-HHHHH-HHHc------------CC--ccc----------------ccccchhHHHHHHHHHHHHHHHHh
Confidence 222111 111 11111 1111 00 000 00001 111223456666777766
Q ss_pred cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000201 1497 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576 (1866)
Q Consensus 1497 ~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~ 1576 (1866)
++ +.-++.+..+.. .....+.+..+|..++.++|++.+..+.... +.+..+++++++.++++|+.+|+.|||.
T Consensus 811 ~~-~~s~s~a~kl~~---~~~s~~s~~~ikvfa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGs 883 (1233)
T KOG1824|consen 811 CP-QKSKSLATKLIQ---DLQSPKSSDSIKVFALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGS 883 (1233)
T ss_pred cc-ccchhHHHHHHH---HHhCCCCchhHHHHHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhh
Confidence 63 333333333322 2233445778999999999999887765433 4555689999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1577 LSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1577 L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
+.. +++..|+|.++..+.+ ++.-++..++++++++.........++.+.||..|..++.+.+|++|+..++|+|.|+
T Consensus 884 l~v--gnl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~ 960 (1233)
T KOG1824|consen 884 LAV--GNLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV 960 (1233)
T ss_pred hhc--CchHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH
Confidence 976 7889999999999875 4677999999999999988776667999999999999999999999999999999999
Q ss_pred hhcChhHH-------------------------------------HHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCC
Q 000201 1657 QCMEDGQL-------------------------------------ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPS 1699 (1866)
Q Consensus 1657 ~~~~~~~~-------------------------------------~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~ 1699 (1866)
...|+.-+ .+.+..++..+.+++..+|+.+..+++++.++-|.
T Consensus 961 l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 961 LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred hCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 87664221 12222344455677777787777788888887765
Q ss_pred cccCCcchHHHHHHHHh------------------hhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhh
Q 000201 1700 AISMSPLFLSILDRLKS------------------SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA 1761 (1866)
Q Consensus 1700 ~~~~~~~~~~~~~~l~~------------------~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~ 1761 (1866)
-+ .+..+++.|.+.+ +..|++..+|++|.+|+..++..|.+. ..+.+|+..+..|
T Consensus 1041 lI--rDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~-----~dit~Fl~~~~~G 1113 (1233)
T KOG1824|consen 1041 LI--RDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR-----LDITEFLNHVEDG 1113 (1233)
T ss_pred HH--HHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhh-----ccHHHHHHHHHhh
Confidence 43 2234444444432 356778899999999999999998765 3678999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc------------CcchhhhhHHHHHHHhhcccccch
Q 000201 1762 LHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD------------GSTPVRLAAERCAVHAFQLTRGSE 1829 (1866)
Q Consensus 1762 l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~------------~~~~vk~aae~a~~~l~~~~~~~~ 1829 (1866)
+.|. .|+|.++..++.++|..+|+.+..+++.++.+|.+.+.- +....|++|.||+.+++++++.+
T Consensus 1114 L~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ip~v~- 1191 (1233)
T KOG1824|consen 1114 LEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLTIPEVE- 1191 (1233)
T ss_pred cchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhcccccc-
Confidence 9986 999999999999999999999999999999999988642 34566889999999999998776
Q ss_pred hHHHHHHHhhhh
Q 000201 1830 YIQGAQKFITGL 1841 (1866)
Q Consensus 1830 ~~~~~~~~~~~~ 1841 (1866)
+.+.|.+|...+
T Consensus 1192 ~np~~~df~sqi 1203 (1233)
T KOG1824|consen 1192 KNPQFSDFESQI 1203 (1233)
T ss_pred cChHHHHHHHHh
Confidence 447788887543
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-43 Score=437.82 Aligned_cols=862 Identities=18% Similarity=0.224 Sum_probs=619.3
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 444 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~--- 444 (1866)
.+.+|++.|.+||+.+|+.|.+++......-| .+..|...- . ... ..++|+.+++.++++...
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i~-~---~~~-----~p~~Rq~aaVl~Rkl~~~~w~ 70 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHIL-A---TSA-----DPQVRQLAAVLLRKLLTKHWS 70 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHHH-h---cCC-----ChHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999976654433 233332211 1 111 348999999999998764
Q ss_pred -cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHH
Q 000201 445 -LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGA 523 (1866)
Q Consensus 445 -~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~ 523 (1866)
++.+...++..-++.....++.+.||.+..+++.++-+.-+.+.|+.|++.+-....+++ ...|+.|+..+..
T Consensus 71 ~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~------~~~rE~al~il~s 144 (1075)
T KOG2171|consen 71 RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPN------PSLRESALLILSS 144 (1075)
T ss_pred cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCC------cchhHHHHHHHHh
Confidence 333445567777766677899999999999999888887777799999998888866543 5689999999999
Q ss_pred HhhhhccCC-cchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh------hhhHHHHHHHHHHHHc---CCChhHHH
Q 000201 524 LAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ------DEAPTLVSRLLDQLMK---SDKYGERR 593 (1866)
Q Consensus 524 i~~~l~~~~-~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~------~~~~~~l~~ll~~L~~---~~~~~~R~ 593 (1866)
+...++... |++..+.+.+.+++.+++..|+..++..+..++.... ..+...++.++..+.. .++.+.-.
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 998887754 5788999999999999988899999988877765552 2355666666655543 33444456
Q ss_pred HHHHHHHHHHhhhCcchhhh--cchHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhC---cCchhcHHhHHHHHHHHcC
Q 000201 594 GAAFGLAGVVKGFGISSLKK--YGIAATLREGLAD-RNSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 594 ~A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~-~~~~~~r~~al~al~~L~~~l~---~~~~p~v~~llp~ll~~~~ 667 (1866)
.+..+|..++... +..+++ ..++.+..+.+.+ +.+...|+.|+..+..+++..+ +...+|...++|.++..+.
T Consensus 225 ~~l~~l~El~e~~-pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mt 303 (1075)
T KOG2171|consen 225 SALEALIELLESE-PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMT 303 (1075)
T ss_pred HHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcC
Confidence 6666677766654 233322 2566666666543 4567889999999999999843 5567788899999999886
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 668 DQV----------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 668 D~~----------------~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
|.. ......|.+++++++..+++..+ +.+++.+...+.+.+|+.|++++.+|+.+++++++.+
T Consensus 304 e~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m 383 (1075)
T KOG2171|consen 304 EEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVM 383 (1075)
T ss_pred CcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH
Confidence 421 23566789999999999998876 8899999999999999999999999999999999999
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcch
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 810 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~ 810 (1866)
...+++|++.+++.++|+||+||.+||.|++++...+. |+++. .+
T Consensus 384 ~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk----------------------------------~~ 428 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQK----------------------------------KH 428 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHH----------------------------------HH
Confidence 99999999999999999999999999999999998774 22211 01
Q ss_pred hhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhH-HHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 811 LALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~-~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
.+.+.|.+...+.+. ++++..+|+.++.++.+.. ....+.||++.+|. .+..+++.+.+.||+.++.+||+++...+
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 222334444444442 5588888888888888754 33678999999999 77777788899999999999999999998
Q ss_pred CC---ChhhHHHHHHHhcccCC---CHHHHHHHHHHHHHHHHHhChhHHHHHHHHH----HHH---hccCChhHHhHHHH
Q 000201 889 EE---NFPDLVSWLLDALKSDN---SNVERSGAAQGLSEVLAALGTVYFEHILPDI----IRN---CSHQRASVRDGYLT 955 (1866)
Q Consensus 889 ~~---~~~~l~~~L~~~L~~~~---~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l----~~~---l~~~~~~vR~~al~ 955 (1866)
+. ||+.+||.|...+.+.. ....|..++.+++.++.++|.+.|.++...+ ... ..+.+...|...+.
T Consensus 508 ~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~ 587 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIA 587 (1075)
T ss_pred hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHH
Confidence 76 88999999999887644 2346678889999999999998665444444 433 33457888999999
Q ss_pred HHHHhhhhhchhhHhHHHHHHHHHHhhccC-CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 956 LFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 956 ~l~~L~~~~g~~f~~~l~~il~~ll~~l~d-~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
+|+.+|..+|++|.||++.++|++++...- ++..+- ... ..++.-.+++|....
T Consensus 588 ~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~--------------d~~-------d~e~~~~~~~~e~~~---- 642 (1075)
T KOG2171|consen 588 FWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALS--------------DEE-------DEEEEQDLDGWEVVE---- 642 (1075)
T ss_pred HHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCc--------------Cch-------hhhhccccccchhhc----
Confidence 999999999999999999999999987542 211100 000 000111122232110
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
..+++. .| .......-+..|+..|+.++.....
T Consensus 643 --------------------~~~~e~-------------~~--------------I~Tsvl~eK~~A~~~Lv~~a~~lk~ 675 (1075)
T KOG2171|consen 643 --------------------LGDKEN-------------IG--------------IRTSVLDEKETACEALGEYAKELKE 675 (1075)
T ss_pred --------------------cCCcee-------------ee--------------eeehhHHHHHHHHHHHHHHHHhhhh
Confidence 000000 01 1111223467899999999998888
Q ss_pred hHHHhHHHHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHHhcc------c----cccchHHHHhcccC-CCCccchhhHHH
Q 000201 1115 TLKEIMPVLMNTLI-SSLASSSSERRQVAGRALGELVRKLGE------R----VLPSIIPILSRGLK-DPSASRRQGVCI 1182 (1866)
Q Consensus 1115 ~l~~~l~~l~~~L~-~~l~~~~~~~R~~A~~~L~~lv~~~~~------~----~l~~llp~L~~~L~-d~~~~vr~~a~~ 1182 (1866)
.|.+|+...++..+ ...-..+..+|.+|+.++..+++..-. . .+..+.|.+...+. ++++.+......
T Consensus 676 ~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~ 755 (1075)
T KOG2171|consen 676 AFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILE 755 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Confidence 88899888888333 333466789999999999988875422 1 34556666666665 457778888888
Q ss_pred HHHHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhH---HHHHHHhccCCCchhHH
Q 000201 1183 GLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI---VPTLLHALEDDQTSDTA 1258 (1866)
Q Consensus 1183 ~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~i---lp~Ll~~L~~~~~~~~a 1258 (1866)
++++.+..+|+..+ .++...+...+...+.+...+.+.. ......++. -...+. +.....
T Consensus 756 ~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r-----------~~~~~eed~d~~eee~~~-----e~d~~l 819 (1075)
T KOG2171|consen 756 SFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDR-----------QEEDDEEDDDIEEEEDLD-----EQDAYL 819 (1075)
T ss_pred HHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhhhhhhhHHHHHHh-----hhhHHH
Confidence 99988888875443 2333333333332221111111110 000000000 000000 000011
Q ss_pred HHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHh
Q 000201 1259 LDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 1338 (1866)
Q Consensus 1259 l~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l 1338 (1866)
++. ....++++++..+..|.+++..+.|.++..+.+.....|..+..+++.+
T Consensus 820 l~~----------------------------i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ 871 (1075)
T KOG2171|consen 820 LDA----------------------------ISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDL 871 (1075)
T ss_pred HHH----------------------------HHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 111 1234567777788899999999999999999877755599999999999
Q ss_pred hhccch---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCC
Q 000201 1339 TLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS 1402 (1866)
Q Consensus 1339 ~~~~~~---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~ 1402 (1866)
+..+++ .+.+.+++.++..+.|.+|++|++|.+.+|.++++.+.++.+.....++.|...+..+
T Consensus 872 ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~ 938 (1075)
T KOG2171|consen 872 IEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPP 938 (1075)
T ss_pred HHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcCh
Confidence 998765 5588999999999999999999999999999999999888777777777776666543
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-41 Score=417.59 Aligned_cols=888 Identities=17% Similarity=0.181 Sum_probs=638.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-CCCHhHHHHHHHHHHHHHhhcCC----CC
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE----EN 891 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~-d~~~~vR~~a~~aL~~l~~~~g~----~~ 891 (1866)
.|++.+...+.++|+.|.+.+.++.. .. .+++.|...+. ..++.+|..|+-.+..+....-+ +.
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~--~~---------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAK--TE---------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhc--cc---------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 34555666777899999999998765 22 26677777765 56899999998888888776433 23
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
-..+...++..+..+....+|...++.++++++....+.|+++++.+++..+++++..|+.++..|..++..+|..+.||
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 44577778888888888889999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
+..+.+.+.+++.|+...||..+++|+..++.....+ -..+.....+++.++..+...
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~-----------------~~~~~~~~~llP~~l~vl~~~----- 214 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENN-----------------KSEVDKFRDLLPSLLNVLQEV----- 214 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccc-----------------hHHHHHHHHHhHHHHHHhHhh-----
Confidence 9999999999999998889999999999988765311 001111112233333222111
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchh--hhHHHHHHHH----H--hcCCCcHHHHHHHHHHHHHHhhcChhh---HHHhH
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRD--KRNEVLAALY----M--VRSDVSLSVRQAALHVWKTIVANTPKT---LKEIM 1120 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~--~~~~vl~~L~----~--~~~D~~~~vR~~A~~~l~~l~~~~p~~---l~~~l 1120 (1866)
..++|++........+.+.++.+ .+...+..++ . ...+.+..+|+.|++++..++++.|.. ..++.
T Consensus 215 ---i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 215 ---IQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred ---hhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 01122222233334444444321 2222232222 2 246678899999999999999987643 34466
Q ss_pred HHHHHHHHHhhcCCC----------------HHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHH
Q 000201 1121 PVLMNTLISSLASSS----------------SERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIG 1183 (1866)
Q Consensus 1121 ~~l~~~L~~~l~~~~----------------~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~ 1183 (1866)
+.+++.++..+.+-. ......|.+++..+..++|++ ++|.+++.+...+.+++|..|++++.+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 777777766654211 124678999999999999876 789999999999999999999999999
Q ss_pred HHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhH----hhHHHHHHHhccCCCchhHHH
Q 000201 1184 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----DEIVPTLLHALEDDQTSDTAL 1259 (1866)
Q Consensus 1184 L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~----~~ilp~Ll~~L~~~~~~~~al 1259 (1866)
++.+.++++ +.+...++++++.+...++|++++||.+|+.|+|++...+.+... +.+.|.|+..+.+....
T Consensus 372 ls~i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~---- 446 (1075)
T KOG2171|consen 372 LSVIAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV---- 446 (1075)
T ss_pred HHHHHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch----
Confidence 999888775 456679999999999999999999999999999999888776432 22233444433332210
Q ss_pred HHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHH-HHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHh
Q 000201 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGAL-AEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETV 1338 (1866)
Q Consensus 1260 ~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~L-a~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l 1338 (1866)
.+..+.+.|+..+ ..+.++.+.||++.++...+..+
T Consensus 447 -------------------------rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L------------------ 483 (1075)
T KOG2171|consen 447 -------------------------RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL------------------ 483 (1075)
T ss_pred -------------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH------------------
Confidence 1112233333333 34556777788877776433322
Q ss_pred hhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCC----ChhHHHHHHHHH
Q 000201 1339 TLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDS----DSTTVAAAWEAL 1414 (1866)
Q Consensus 1339 ~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~----~~~v~~~A~~aL 1414 (1866)
..++.+.+|..++.+++..+...+..|.+|++.+++.|...+... ...+|....+|+
T Consensus 484 -------------------~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 484 -------------------LQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred -------------------hcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 344556777888888888888888999999999999999988633 346788888999
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 1494 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~ 1494 (1866)
+.+....+++..-.+...+.+.+-... .+....+..++...+..++.+|
T Consensus 545 sli~~AVGke~F~~~a~eliqll~~~~-------------------------------~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 545 SLIARAVGKEKFLPLAEELIQLLLELQ-------------------------------GSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhhc-------------------------------ccchhhccccHHHHHHHHHHHH
Confidence 988888776544333333322221110 0123345567888888999999
Q ss_pred hhcChhhhhhhhhhhhHHHHHHhcCC-----------------CC------------------HHHHHHHHHHHHHHHHh
Q 000201 1495 EVTSEQSLKEFVIPITGPLIRIIGDR-----------------FP------------------WQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1495 ~~~~~~~l~~~v~~i~~~Li~~l~~~-----------------~~------------------~~vr~~al~~L~~L~~~ 1539 (1866)
+.. ++.|.||.+.++||+++..+-. .+ -.-|..++..|+.+...
T Consensus 594 ~il-g~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~ 672 (1075)
T KOG2171|consen 594 RIL-GDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKE 672 (1075)
T ss_pred HHh-chhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHh
Confidence 998 7899999999999999865311 00 13377899999999999
Q ss_pred cCCCCCCchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc------------cCChhhHHHHHHHHhcc-CChhHHHH
Q 000201 1540 GGIALKPFLPQLQTTFIKCLQD-STRTVRSSAALALGKLSAL------------STRVDPLVGDLLSSLQV-SDAGIREA 1605 (1866)
Q Consensus 1540 ~~~~~~~~lp~L~~~l~~~l~d-~~~~vR~~Aa~aLg~L~~~------------~~~~~~~l~~L~~~l~~-~~~~vr~~ 1605 (1866)
.+..+.||+.+....++..+.- .+..||.+|+.+++.++.. .+.+..+.+.++..+.+ ++.++...
T Consensus 673 lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~ 752 (1075)
T KOG2171|consen 673 LKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSE 752 (1075)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHH
Confidence 9999999999998866555544 4999999999999998431 12245566777777754 56899999
Q ss_pred HHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhh
Q 000201 1606 ILTALKGVLKHAGK-SVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH 1684 (1866)
Q Consensus 1606 ~l~aL~~vi~~~~~-~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~ 1684 (1866)
+++++.+++..+|. .+.+.....+...+...+.......+.. -.. ... +....--+..+. ..+...-.
T Consensus 753 vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r----~~~---~~e-ed~d~~eee~~~---e~d~~ll~ 821 (1075)
T KOG2171|consen 753 ILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDR----QEE---DDE-EDDDIEEEEDLD---EQDAYLLD 821 (1075)
T ss_pred HHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhh----hhh---hhh-hhhhhHHHHHHh---hhhHHHHH
Confidence 99999999999995 4777777777766555333221111100 000 000 000000111111 11111222
Q ss_pred hHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCC
Q 000201 1685 GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHD 1764 (1866)
Q Consensus 1685 ~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~ 1764 (1866)
...-.+.++++.....+. ++++.+.+.+...+.++++--|+.|+++++.++.++++.. .++...+++.++..+.|
T Consensus 822 ~i~~i~~~l~k~~k~~f~--p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~---~~~~~~~~p~~~~~~~d 896 (1075)
T KOG2171|consen 822 AISDILAALAKALKGSFL--PFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEAS---AKYKERFLPLVLEALQD 896 (1075)
T ss_pred HHHHHHHHHHHHcccccc--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHcCC
Confidence 344467777777776653 5889999999999998887669999999999999998654 37888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccC---cchhhhhHHHHHHHhhcccccchhHHHHHHHhhhh
Q 000201 1765 DSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDG---STPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGL 1841 (1866)
Q Consensus 1765 ~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~---~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~ 1841 (1866)
.+++||++|.++++.+|++.++.+++.+...+|.|...+... +...+.|.|+|+.++.|+...... ... ...+
T Consensus 897 ~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~---~i~-vdqv 972 (1075)
T KOG2171|consen 897 SDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPN---RIP-VDQV 972 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCc---cCc-HHHH
Confidence 999999999999999999999999999999999999988764 355788999999999888764311 111 5567
Q ss_pred hhhhhccCCCCCCCCcCc
Q 000201 1842 DARRLSKFPEHSDDSEDS 1859 (1866)
Q Consensus 1842 ~~~~~~~~~~~~~~~~~~ 1859 (1866)
.+.||+|||..+|.+|+.
T Consensus 973 l~~~l~~LPl~~D~eEa~ 990 (1075)
T KOG2171|consen 973 LPAWLSWLPLKEDKEEAV 990 (1075)
T ss_pred HHHHHHhCCCccchhhhh
Confidence 889999999999999875
No 5
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-42 Score=408.61 Aligned_cols=648 Identities=16% Similarity=0.220 Sum_probs=498.4
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchh-----------------eeeecCCchhHHH-HHH
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-----------------WIAVHDPEKSVAE-AAE 355 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~ 355 (1866)
|++.++|.+++|||.++|+.|+.+|.++. .+|++.++..+.++ -++..++.|..++ ...
T Consensus 1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 1 MELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred CcHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 46678899999999999999999999876 56676555555444 3455566665555 678
Q ss_pred HHhhhcCCccCCCh-hhhhhhcCCCCHHHHHHHHHHHHHHH------HhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 000201 356 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATAL------DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 428 (1866)
Q Consensus 356 ~~w~~~~~~~~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 428 (1866)
++|.....+.++++ ..++.+|+++.+..+..|+++++++. ..||+++..+..++.+ .+ +.
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~--------~~-----~~ 144 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE--------EQ-----AS 144 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc--------cc-----ch
Confidence 99998888888888 66789999999999999999999985 4588887776666632 11 33
Q ss_pred chhhHHHHHHHHhhhhcCCCCh----HHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHH----hhccc-chhhhHH-HHH
Q 000201 429 LGRQGIALALHSAADVLRTKDL----PVIMTFLISRAL-ADTNADVRGRMLNAGIMIID----KHGRD-NVSLLFP-IFE 497 (1866)
Q Consensus 429 ~~R~~~~~~l~~~~~~~~~~~~----~~~~~fli~~~l-~d~~~~vr~~~~~a~~~~i~----~~g~~-~~~~ll~-~le 497 (1866)
.+|+++..|+||+|..++++.+ +.+++.++.++. ++++..||.++++|....+. ++..+ ..+.+|+ +||
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 7999999999999999988753 358888888876 68999999999999765443 33332 3468888 688
Q ss_pred HhhcCCCCChhhhhhHHHHHHHHHHHHh-hhhccCCcchH-HHHHHHHHhcCCCcHH-------HHHHHHhhhhhhh---
Q 000201 498 NYLNKKASDEEKYDLVREGVVIFTGALA-KHLAKDDPKVH-AVVDKLLDVLNTPSEA-------VQRAVSSCLSPLM--- 565 (1866)
Q Consensus 498 ~~L~~~~~~~~~~~~vr~~av~~l~~i~-~~l~~~~~~~~-~l~~~l~~~l~~~~~~-------v~~~~~~~l~~lv--- 565 (1866)
.+ .+.+ ..+|.+|++||.+|. -||+...+++. .+|...+.++++++++ ||+.+|+.=..+.
T Consensus 225 at----q~~d---~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~ 297 (859)
T KOG1241|consen 225 AT----QSPD---EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY 297 (859)
T ss_pred cc----cCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 3333 579999999999998 56666778886 5999999999988775 5676665422211
Q ss_pred ------------Hhhh-hhhHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC
Q 000201 566 ------------QSMQ-DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626 (1866)
Q Consensus 566 ------------~~~~-~~~~~~l~~ll~~L~~------~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~ 626 (1866)
+.+. ...+..++.+++.|.+ +++|..-++|+.||..+++..|.+.+. .++||+.+.+++
T Consensus 298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~ 375 (859)
T KOG1241|consen 298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQN 375 (859)
T ss_pred HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCC
Confidence 1111 3456788888988886 356999999999999999999888874 899999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHHhC-cCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC
Q 000201 627 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE 705 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~-~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~ 705 (1866)
. ||+.|++|.++||.+.++.. ..+.|++.+.+|.++..+.|+...||++++|+++++++.++....
T Consensus 376 p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~------------ 442 (859)
T KOG1241|consen 376 P-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII------------ 442 (859)
T ss_pred c-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc------------
Confidence 5 69999999999999999976 568999999999999999999999999999999999986652111
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc------------chhHH
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------NPEIA 773 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~------------~~~i~ 773 (1866)
...++..+++.+.+.|+| +|+|..++||++..+++... +|.+.
T Consensus 443 ------------------------n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~ 497 (859)
T KOG1241|consen 443 ------------------------NQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE 497 (859)
T ss_pred ------------------------cHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH
Confidence 123445777788888888 68999999999988885432 13566
Q ss_pred hHHHHHHHhhCCCC---hhHH-HHHHHHHh-ccccccCCcchhhhHHHHHHHhhcC------CCH-------HHHHHHHH
Q 000201 774 SLVPTLLMGLTDPN---DHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRE------RSA-------ETKKKAAQ 835 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~---~~vr-~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d------~~~-------~vr~~a~~ 835 (1866)
.++..|++....++ .+.| .++++|.. ..++.....+....+.+.+...+.. -+. +++...|.
T Consensus 498 ~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 498 AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 77777777765433 2466 46666665 3444444444555555555443321 122 34444555
Q ss_pred HHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHH
Q 000201 836 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVE 911 (1866)
Q Consensus 836 ~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~ 911 (1866)
.++.+...++. ++.++.+.+|..+...++. .+..+.+.|+.+++.+++.+|+. |.+.+.|+|...|++..++.+
T Consensus 578 ~Lq~i~rk~~~--~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGS--DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccc--cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 55665555544 7788999999999999998 55678899999999999999986 788999999999988777755
Q ss_pred HHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc--
Q 000201 912 RSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-- 984 (1866)
Q Consensus 912 R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-- 984 (1866)
-..+.-..|.++++++.+ +.+++|..+++.++++ +..+|...+++||.++..+|.+|.+|+..+++.+.+.-+
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~ 735 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ 735 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 444444569999999988 6689999999999987 789999999999999999999999999999998887642
Q ss_pred -CC--------ChHHHHHHHHHHHHHHHhhc
Q 000201 985 -DE--------NESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 985 -d~--------~~~VR~~a~~al~~i~~~~~ 1006 (1866)
|+ ..++|+++++++..++..+.
T Consensus 736 ~d~~~~~~~dYvd~LRe~~leay~gi~qglk 766 (859)
T KOG1241|consen 736 TDPADDSMVDYVDELREGILEAYTGIIQGLK 766 (859)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 12588888888888887665
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=337.32 Aligned_cols=964 Identities=19% Similarity=0.225 Sum_probs=653.2
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh-
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK- 612 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~- 612 (1866)
...++..+++.|.+.+.+||..+.+|+.+++...+ +.....++.+..+++.+++ +.|.-++.+|..++..+.|..-.
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~ke-q~rdissi~Lktvi~nl~P~~~~~ 123 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKE-QLRDISSIGLKTVIANLPPSSSSF 123 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchh-hhccHHHHHHHHHHhcCCCccccc
Confidence 45788889999999999999999999999998777 4577888888888876654 78999999999988877652211
Q ss_pred -----hcchHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000201 613 -----KYGIAATLREGLADRNSA-KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686 (1866)
Q Consensus 613 -----~~~ii~~L~~~i~~~~~~-~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~ 686 (1866)
...+.+.+.+++....+. ..+-.++..++.....+|..+.++-..++..++.-++.+...||+.|..+++.++.
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~ 203 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS 203 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH
Confidence 224666777766543332 35666777777777788888888878888888888899999999999999999999
Q ss_pred hhcHhhHHhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc---cCCChHHHHHHHHHHHH
Q 000201 687 QLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 687 ~l~~~~v~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L---~D~~~~VR~aA~~aL~~ 762 (1866)
..+.+.+..++..++.+|..+ +...-+..+++|++++..++..+..|++.++|.+...+ +..+.+.|+.+.++++.
T Consensus 204 ~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 204 SCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred hcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 999999999999999999765 45556678999999999999999999999999999999 66778999999999999
Q ss_pred HHhhccc---hhHHhHHHHHHHhh-CCCChh--H-H-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHH
Q 000201 763 VGSVIKN---PEIASLVPTLLMGL-TDPNDH--T-K-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAA 834 (1866)
Q Consensus 763 l~~~i~~---~~i~~lv~~L~~~l-~d~~~~--v-r-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~ 834 (1866)
|....+. |.+.+++..+++.+ .|||-. . . +--..+-....-...+. -.-=+|-+|.||++|+
T Consensus 284 fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de----------YsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 284 FLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE----------YSDDEDMSWKVRRAAA 353 (1233)
T ss_pred HHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc----------cccccchhHHHHHHHH
Confidence 9876542 44566666666665 477631 1 0 00001100000000000 0001245899999999
Q ss_pred HHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--hcccCCCHHHH
Q 000201 835 QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD--ALKSDNSNVER 912 (1866)
Q Consensus 835 ~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~--~L~~~~~~~~R 912 (1866)
+++..++. +..+.+..++..+-|.+...+++....|+...+.++-.+....+. ..+++-+ ..........+
T Consensus 354 Kcl~a~Is--SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~-----~~~~~~d~d~~e~~g~~s~~ 426 (1233)
T KOG1824|consen 354 KCLEAVIS--SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP-----VIEVLADNDAMEQGGTPSDL 426 (1233)
T ss_pred HHHHHHHh--ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-----CcccccCchhhhccCCccch
Confidence 99999987 454566677888999999999999999999999888888775542 2222210 00000000011
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC--hHH
Q 000201 913 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESV 990 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~--~~V 990 (1866)
....+... .++..+-..+++..-..|.+++..+..+....+....+|++.++|.+...+.|.+ .+.
T Consensus 427 ~~L~~~~~------------~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ 494 (1233)
T KOG1824|consen 427 SMLSDQVP------------LIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL 494 (1233)
T ss_pred HHHHhhhH------------HHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence 11111111 1222222233344455788999999999999999999999999999999998864 356
Q ss_pred HHHHHHHHHHHHHhhcccc----hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHH
Q 000201 991 RDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1066 (1866)
Q Consensus 991 R~~a~~al~~i~~~~~~~~----i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~ 1066 (1866)
+..++..+...+...+.+. +..+.|.+.....|+.+++-.+++-..+.++..+.+......++. .
T Consensus 495 ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~--------~--- 563 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA--------S--- 563 (1233)
T ss_pred HHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC--------C---
Confidence 6666666666655555543 445667777888999999999999888888876654322111110 0
Q ss_pred HHHHHHHhchhhhHHHHHHHHH--hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000201 1067 GRAIIEVLGRDKRNEVLAALYM--VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1144 (1866)
Q Consensus 1067 ~~~l~~~lg~~~~~~vl~~L~~--~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~ 1144 (1866)
.+...++..... ..+|.+.+||+.|+.+++.++.+++..+...+|..++.++++++ ++-.|..|.+
T Consensus 564 ----------~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~Avk 631 (1233)
T KOG1824|consen 564 ----------PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVK 631 (1233)
T ss_pred ----------hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHH
Confidence 011111111111 24788999999999999999999998888999999999999995 5678999999
Q ss_pred HHHHHHHHhc----cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHH
Q 000201 1145 ALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRE 1220 (1866)
Q Consensus 1145 ~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~ 1220 (1866)
++..++...- .+++..++|.+...++......|.+...++-.++...+...-...++.++..+-..+.+.+-.+-+
T Consensus 632 Alt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~ 711 (1233)
T KOG1824|consen 632 ALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQ 711 (1233)
T ss_pred HHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9998875421 135667777777777666667788888888888777654333344566666677777888888888
Q ss_pred HHHHHHHHHHHHhch---hhHhhHHHHHHHhccCCCchhHHHHHHHHHh----hcccccc-chhhhhhhhcCCccc----
Q 000201 1221 SAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQTSDTALDGLKQIL----SVRTTAV-LPHILPKLVHLPLSA---- 1288 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g~---~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il----~~~~~~i-lp~Lip~L~~~~~~~---- 1288 (1866)
.|...+..+...... .....+++.++..++++--.+.++..+...+ ..+.+.+ +-.++..+..+-...
T Consensus 712 ~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~ 791 (1233)
T KOG1824|consen 712 LAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDG 791 (1233)
T ss_pred HHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccc
Confidence 888877777654332 2345678888888888776666555443322 1111111 111111111111000
Q ss_pred hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc---HHHHHHHHHhccCCCchhH
Q 000201 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG---VESLVSELLKGVGDNQASI 1365 (1866)
Q Consensus 1289 ~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~ll~~L~~~l~~~~~~v 1365 (1866)
..-+|.. +...|...+...+++.. ...++..+.. ...+..+
T Consensus 792 l~kqa~~----------------------------------siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~i 835 (1233)
T KOG1824|consen 792 LHKQAYY----------------------------------SIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSI 835 (1233)
T ss_pred hhHHHHH----------------------------------HHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhH
Confidence 0011111 12234444444444222 2333333333 2344678
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhh
Q 000201 1366 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
|..|.-.+|.+......... +.+-..++..++.++++|+.+|.-||+.+.... ++.+++.+.+.+.+
T Consensus 836 kvfa~LslGElgr~~~~s~~---~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn----l~~yLpfil~qi~s------ 902 (1233)
T KOG1824|consen 836 KVFALLSLGELGRRKDLSPQ---NELKDTIIEAFNSPSEDVKSAASYALGSLAVGN----LPKYLPFILEQIES------ 902 (1233)
T ss_pred HHHHHhhhhhhccCCCCCcc---hhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----hHhHHHHHHHHHhc------
Confidence 88888888888765443333 344446778899999999999999999987543 33344444333321
Q ss_pred hhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHH
Q 000201 1446 RKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQV 1525 (1866)
Q Consensus 1446 ~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~v 1525 (1866)
.+.-++--.+.+.+++...+.+.++
T Consensus 903 ---------------------------------qpk~QyLLLhSlkevi~~~svd~~~---------------------- 927 (1233)
T KOG1824|consen 903 ---------------------------------QPKRQYLLLHSLKEVIVSASVDGLK---------------------- 927 (1233)
T ss_pred ---------------------------------chHhHHHHHHHHHHHHHHhccchhh----------------------
Confidence 1222233344455555444333334
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHH
Q 000201 1526 KSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREA 1605 (1866)
Q Consensus 1526 r~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~ 1605 (1866)
|+.+.+|..+.+......+..|...+.|||.++.+.| +.++|.|-..+.++.+..|.+
T Consensus 928 --------------------~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--esLlpkL~~~~~S~a~~~rs~ 985 (1233)
T KOG1824|consen 928 --------------------PYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--ESLLPKLKLLLRSEASNTRSS 985 (1233)
T ss_pred --------------------hhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--HHHHHHHHHHhcCCCcchhhh
Confidence 4445555555555555566789999999999987654 678999988888888999999
Q ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCC
Q 000201 1606 ILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPS 1679 (1866)
Q Consensus 1606 ~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~ 1679 (1866)
++.|++..+..-...+. ++..+.+.-....+.++|..||+.+...+...+++-| .-+..+++++++++.+++
T Consensus 986 vvsavKfsisd~p~~id-~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-slIrDllpeLLp~Ly~eT 1057 (1233)
T KOG1824|consen 986 VVSAVKFSISDQPQPID-PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-SLIRDLLPELLPLLYSET 1057 (1233)
T ss_pred hhheeeeeecCCCCccC-HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-hHHHHHHHHHHHHHHHhh
Confidence 99999988887777777 5655555555556899999999999999999998887 477778888777654443
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-34 Score=329.92 Aligned_cols=704 Identities=17% Similarity=0.225 Sum_probs=513.5
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCC
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT 447 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~ 447 (1866)
++..+++--.|||..+|+.+...+-.+-. +||+. +++-.+.. +++ + +....|+.++..|++....-..
T Consensus 14 ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfn-nYL~~IL~----~~~-~-----~d~~~Rs~aGLlLKNnvr~~~~ 81 (885)
T KOG2023|consen 14 QLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDFN-NYLIYILI----RAK-S-----EDVPTRSLAGLLLKNNVRGHYN 81 (885)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhc-ccchh-ceeeEEEe----ccc-c-----cchhHHHHhhhhHhcccccccc
Confidence 34667788889999999999988877653 78854 22222210 111 1 1346799999999987543222
Q ss_pred CChHHHHHHHH---hhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHH
Q 000201 448 KDLPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 524 (1866)
Q Consensus 448 ~~~~~~~~fli---~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i 524 (1866)
.-......|+- -++++|.++-+|......++.++..+|-.+|+.++|.+-.+|++++ ....++|+..|.+|
T Consensus 82 ~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d------~n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 82 SIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPD------YNTCEGAFGALQKI 155 (885)
T ss_pred CCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCc------ccccchhHHHHHHH
Confidence 22224455542 2578999999999888888888999999999999999999988754 35678999999999
Q ss_pred hhh----hcc--CCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH---cCCChhHHHHH
Q 000201 525 AKH----LAK--DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM---KSDKYGERRGA 595 (1866)
Q Consensus 525 ~~~----l~~--~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~---~~~~~~~R~~A 595 (1866)
+.. ++. ....++.+++++++..+++++..|+.+..|+..++......+...++.+++.++ +++++.+|+..
T Consensus 156 cEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~v 235 (885)
T KOG2023|consen 156 CEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNV 235 (885)
T ss_pred HhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 843 332 123588999999999999999999999999988876655555555555555554 57788999999
Q ss_pred HHHHHHHHhhhCcchhhh--cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh--CcCchhcHHhHHHHHHHHcCC---
Q 000201 596 AFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFSD--- 668 (1866)
Q Consensus 596 ~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l--~~~~~p~v~~llp~ll~~~~D--- 668 (1866)
+.++.-+.... ++++.+ ..|+.++.+..++.++ .+.-.|+..+-.+++.. ...+.||+.+++|+++..+.-
T Consensus 236 C~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE-~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 236 CRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDE-NVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcch-hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999988865 444322 2688888888888665 45556777788888863 356889999999999876630
Q ss_pred --------C---------------------------------------------CHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 669 --------Q---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 669 --------~---------------------------------------------~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
. +.+.|+..+.+++.++..++.+-.+.
T Consensus 314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~ 393 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPI 393 (885)
T ss_pred cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHH
Confidence 0 14799999999999999888888899
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
++|.+.+.|.++.|.+|.+++.+||++++++-+.+-++||.++|.++.+|+|..|-||...||+|+++++++.+..-.+
T Consensus 394 l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~- 472 (885)
T KOG2023|consen 394 LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE- 472 (885)
T ss_pred HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875421100
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 776 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
.+.-++.-+++.+-|.+.+|+.+||.++..+-+..+ .++.||+.
T Consensus 473 ----------------------------------~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~--~eLVp~l~ 516 (885)
T KOG2023|consen 473 ----------------------------------YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG--EELVPYLE 516 (885)
T ss_pred ----------------------------------hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc--chhHHHHH
Confidence 111222333444456667888888888888887443 47889999
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALK--SDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-----~~~~l~~~L~~~L~--~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
.|+..+...++.-..+--.....|+|++++.+|.. |+.-++|.|++... ++++ ..--...++++.++.++|.
T Consensus 517 ~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-KdLfPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 517 YILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-KDLFPLLECLSSIASALGV 595 (885)
T ss_pred HHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-chHHHHHHHHHHHHHHHhc
Confidence 99888888776422222235677899999988753 67778888877543 2222 2455778999999998886
Q ss_pred hHH---HH-------HHHHHHHHh---cc------CChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCC
Q 000201 929 VYF---EH-------ILPDIIRNC---SH------QRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADEN 987 (1866)
Q Consensus 929 ~~l---~~-------ll~~l~~~l---~~------~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~ 987 (1866)
..+ ++ ++....+.. +. ++...-..++.++..++..+|...++.+ +.+...++.++.|+.
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 521 22 222112211 11 1223334678999999999999888876 448899999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccc---hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchH
Q 000201 988 ESVRDAALGAGHVLVEHYATTS---LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1064 (1866)
Q Consensus 988 ~~VR~~a~~al~~i~~~~~~~~---i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e 1064 (1866)
++||..+..-++.+.+.+.+.. +..++|.+...+.-++-.+-..++..+|++.-+.... ..
T Consensus 676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~----------------~~ 739 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK----------------MK 739 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh----------------hh
Confidence 9999999999998888765442 3446666655555455567778888888886543210 00
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHH
Q 000201 1065 AHGRAIIEVLGRDKRNEVLAALYMV--RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQV 1141 (1866)
Q Consensus 1065 ~~~~~l~~~lg~~~~~~vl~~L~~~--~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~ 1141 (1866)
.+...++..|+.. +......+-+...-++|.+.-..|..+.++++.+++.-+..+.. .+.+.+..
T Consensus 740 ------------~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~s 807 (885)
T KOG2023|consen 740 ------------QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKES 807 (885)
T ss_pred ------------hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHH
Confidence 1223455555543 33444566677777889999889999999999999888776663 45577889
Q ss_pred HHHHHHHHHHHhcccc
Q 000201 1142 AGRALGELVRKLGERV 1157 (1866)
Q Consensus 1142 A~~~L~~lv~~~~~~~ 1157 (1866)
|.+.+..++..-+..+
T Consensus 808 AFrG~c~mi~vNp~~v 823 (885)
T KOG2023|consen 808 AFRGLCNMINVNPSGV 823 (885)
T ss_pred HHHHHHHheeeCchhh
Confidence 9999998887655443
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-32 Score=310.00 Aligned_cols=685 Identities=15% Similarity=0.137 Sum_probs=463.9
Q ss_pred hhhHHHHHhh-hcCCChhHHHHHHhhhccCccccCCCCCcccccc-----------------chheeeecCCchhHHH-H
Q 000201 293 PNEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-----------------TSLWIAVHDPEKSVAE-A 353 (1866)
Q Consensus 293 ~~~~~~~l~~-~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-~ 353 (1866)
..|+.+|.++ ++|||+++|..++.+|.+.. +.++..++.++ ..+.++...+++..++ -
T Consensus 3 ~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~---~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 3 KSEFRCLGKNHVLSPDPNARLRAEAQLLELQ---SGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred hHHHHHHHhcccCCCCCCccccHHHHHHHhc---cccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 4567788877 59999999999999998875 33433333322 2334465666666555 6
Q ss_pred HHHHhhhcCCccCCCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 354 AEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALD------EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 354 ~~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
+.++|.....+.+++. ...+.+|.++.+..-..|++.++++.. .||+++.....+. .+. +
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nv--------g~e-----q 146 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNV--------GDE-----Q 146 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhc--------ccc-----C
Confidence 8899998777777777 556799999999999999999999852 3666655444444 121 2
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChH----HHHHHHHhhhc-CCCcHHHHHHHHHHHHH-HHHhhc----ccchhhhHH-H
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLP----VIMTFLISRAL-ADTNADVRGRMLNAGIM-IIDKHG----RDNVSLLFP-I 495 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~----~~~~fli~~~l-~d~~~~vr~~~~~a~~~-~i~~~g----~~~~~~ll~-~ 495 (1866)
|..+++....+++|+|+.-.|+.+. .++..++.+++ +++...||.+++.|... .+...| ....+++|+ +
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv 226 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV 226 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence 5567888899999999987775543 35556666776 58899999999999665 332222 234578888 5
Q ss_pred HHHhhcCCCCChhhhhhHHHHHHHHHHHHh-hhhccCCcchH-HHHHHHHHhcCCCcHHH-------HHHHHhhhhhh--
Q 000201 496 FENYLNKKASDEEKYDLVREGVVIFTGALA-KHLAKDDPKVH-AVVDKLLDVLNTPSEAV-------QRAVSSCLSPL-- 564 (1866)
Q Consensus 496 le~~L~~~~~~~~~~~~vr~~av~~l~~i~-~~l~~~~~~~~-~l~~~l~~~l~~~~~~v-------~~~~~~~l~~l-- 564 (1866)
||.+ ...+ .+++.+|+.|+.+|. -+++-..++++ .++..+...+++++++| |+.+++.=...
T Consensus 227 ceat----q~~d---~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 227 CEAT----QGND---EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred ehhc----cCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence 8887 3333 579999999999998 45555567776 57788888899998765 44444431100
Q ss_pred -------h--Hhhh---hhhHHHHHHHHHHHHc------CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC
Q 000201 565 -------M--QSMQ---DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 626 (1866)
Q Consensus 565 -------v--~~~~---~~~~~~l~~ll~~L~~------~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~ 626 (1866)
+ ..++ ....+.++.++..|.+ +++|...++|+.||-.+++..|...+. .++.|+.+.+++
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~ 377 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRS 377 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccC
Confidence 0 1111 1245678888888875 457999999999999999988877764 489999999987
Q ss_pred CCcHHHHHHHHHHHHHHHHHhC-cCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC
Q 000201 627 RNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE 705 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~-~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~ 705 (1866)
+ +|+.|++|+++||.+.++.. ..+.+++.+.+|.+...+.|+..-|.++++||+++|+..+....
T Consensus 378 ~-~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i------------- 443 (858)
T COG5215 378 E-SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMII------------- 443 (858)
T ss_pred c-hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhc-------------
Confidence 4 69999999999999999876 45788899999999999999999999999999999987553210
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc----------hhHHhH
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----------PEIASL 775 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~----------~~i~~l 775 (1866)
....|++..+...+..+.| +|.+..+++|+...++.++.. +.+..+
T Consensus 444 -----------------------~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai 499 (858)
T COG5215 444 -----------------------SPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAI 499 (858)
T ss_pred -----------------------CccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHH
Confidence 0112445555555556666 577777777777777665542 122334
Q ss_pred HHHHHHhhC--CCChhHH-HHHHHHHh-ccccccCCcchhhhHHHHHHHhhcC--------CCH-------HHHHHHHHH
Q 000201 776 VPTLLMGLT--DPNDHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRE--------RSA-------ETKKKAAQI 836 (1866)
Q Consensus 776 v~~L~~~l~--d~~~~vr-~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d--------~~~-------~vr~~a~~~ 836 (1866)
+..|++... +...+.| ..+.+|.. ..+......+.++.+...+.+.+.. -.. ++...-+..
T Consensus 500 ~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~v 579 (858)
T COG5215 500 LNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGV 579 (858)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 444443321 1112334 23333332 1233222223333333333333221 011 333333334
Q ss_pred HHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH-hHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHH
Q 000201 837 VGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 837 l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~-~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+..++. +.+.++.+..+++|..+.+.++...+ .+-.....+++.+...+++. |.+.++|+|...+. ..+..+-
T Consensus 580 l~aiir--~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~ 656 (858)
T COG5215 580 LEAIIR--TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVL 656 (858)
T ss_pred HHHHHH--hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHH
Confidence 444443 23456778888999999999987744 45567889999999988865 77889999999884 3444344
Q ss_pred HHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CC
Q 000201 913 SGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DE 986 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~ 986 (1866)
..+...++.+++.+|.+ +.+.++..+.+.++++ +.++|...+++|+.++..+|..|.+|++.++-.+.+.-. ++
T Consensus 657 ~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p 736 (858)
T COG5215 657 NSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDP 736 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Confidence 45555569999999988 5688999999999886 788999999999999999999999999999877766532 11
Q ss_pred -C-----hH----HHHHHHHHHHHHHHhhcccchhchHHhHhcc-------cCCCch--HHHHHHHHHHHHHHHHhc
Q 000201 987 -N-----ES----VRDAALGAGHVLVEHYATTSLPLLLPAVEDG-------IFNDNW--RIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 987 -~-----~~----VR~~a~~al~~i~~~~~~~~i~~llp~l~~~-------l~d~~w--~vR~~s~~ll~~ll~~~~ 1044 (1866)
+ .+ ++.....++-.|..... ..++.++|.+... ..|++- ..-++++.++|++..-.+
T Consensus 737 ~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~-nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfp 812 (858)
T COG5215 737 HSDEVYVDDYRKNAVQLVNCAYVGIGDSSK-NRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFP 812 (858)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCC
Confidence 1 12 33444445555554432 2244556654322 234332 234677888888875554
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-28 Score=285.16 Aligned_cols=774 Identities=18% Similarity=0.200 Sum_probs=508.0
Q ss_pred hccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc-cc--ccCCcchhhhHHHHHHH
Q 000201 744 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT-FV--NTVDAPSLALLVPIVHR 820 (1866)
Q Consensus 744 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~-~~--~~~~~~~l~~l~p~L~~ 820 (1866)
-...+++.+|+++.+.+.++-. -|.+...+-.++......+..+|.+...+.... -. ..........+-..+++
T Consensus 21 ~s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~ 97 (885)
T KOG2023|consen 21 NSQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLH 97 (885)
T ss_pred hccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHh
Confidence 3456789999999999988754 233322222222222333344565555554411 11 12223456667777888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC--------CCh
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE--------ENF 892 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~--------~~~ 892 (1866)
++.+.++-+|....-++..+++. .-....+.++|.|.+++..++....+.|+.||..+++...+ .-+
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~-----~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl 172 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIAST-----GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL 172 (885)
T ss_pred hccCchHHHHhhhhheeeeeecc-----cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch
Confidence 99999988887655555544442 12345689999999999999999999999999999885432 235
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhH
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 969 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~ 969 (1866)
.-++|.+++..+.. ++..|..+..++..++-.-... .++.++..++...++++++||...+.+|..+-..-+..+.
T Consensus 173 ~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 56899999888765 5669999888886655433322 5688899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh-c----ccchhchHHhHhcccCCCchHHHHHHHHHHH-------
Q 000201 970 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY-A----TTSLPLLLPAVEDGIFNDNWRIRQSSVELLG------- 1037 (1866)
Q Consensus 970 ~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~-~----~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~------- 1037 (1866)
||+..+++.++....|.+++|...|.+.+-.+.+.- . ...++.++|-+.+++...+..+- +++
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~-----LL~~~eeD~~ 326 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII-----LLKNNEEDES 326 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH-----HhcCcccccc
Confidence 999999999999999999999888877777666532 1 12345677777776643222111 010
Q ss_pred ----------HHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000201 1038 ----------DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1107 (1866)
Q Consensus 1038 ----------~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~ 1107 (1866)
.+...-.-..+....+++++||+++.+ -....|..|+.++..+.-
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd-------------------------D~~~dWNLRkCSAAaLDV 381 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD-------------------------DAFSDWNLRKCSAAALDV 381 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccc-------------------------cccccccHhhccHHHHHH
Confidence 000000000000000000111111100 123468899998888888
Q ss_pred HhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc---cccchHHHHhcccCCCCccchhhHHHHH
Q 000201 1108 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGL 1184 (1866)
Q Consensus 1108 l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vr~~a~~~L 1184 (1866)
++...+. +++|.++|.+...|.+.++.+|.++..++|.+++++-.. .+|.++|.+...|.|+.+-+|.-.|++|
T Consensus 382 Lanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 382 LANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred HHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeH
Confidence 8877765 678999999999999999999999999999999887554 5788999999999999999999999999
Q ss_pred HHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHH
Q 000201 1185 SEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQ 1264 (1866)
Q Consensus 1185 ~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~ 1264 (1866)
+..........-..|+..++..+.+.+-|.+..|+++|+.||..+-+..|. +++|
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~----eLVp--------------------- 513 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE----ELVP--------------------- 513 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc----hhHH---------------------
Confidence 987554433333467777788888888899999999999999877665543 2333
Q ss_pred HhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc-
Q 000201 1265 ILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID- 1343 (1866)
Q Consensus 1265 il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~- 1343 (1866)
|+..|+..++..+..-...--.....+++++..+++
T Consensus 514 -------------------------------------------~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 514 -------------------------------------------YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 222222222222211000000001123333333332
Q ss_pred ----hhcHHHHHHHHHhc---cCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 000201 1344 ----EEGVESLVSELLKG---VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSR 1416 (1866)
Q Consensus 1344 ----~~~~~~ll~~L~~~---l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~ 1416 (1866)
+.+++-+||.|++. ++|+|... ---++++..+....+..|.+|.+.+....+.++. .++..
T Consensus 551 ~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~-----------~t~q~ 618 (885)
T KOG2023|consen 551 ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQ-----------KTLQL 618 (885)
T ss_pred hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHH-----------HHHHH
Confidence 24577777777653 56665443 4556777777777777788887777666655542 11222
Q ss_pred HHhcCCc--------chhh---hhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHH
Q 000201 1417 VVASVPK--------EVQP---SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQ 1485 (1866)
Q Consensus 1417 l~~~~~~--------~~l~---~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~ 1485 (1866)
+.+.... +.+- .++.-+.+.+.+. +..+. .-+.++.++.+++.+..+++|+.
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~--------------ie~Lv---a~snl~~lll~C~~D~~peVRQS 681 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH--------------IEPLV---AQSNLLDLLLQCLQDEVPEVRQS 681 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc--------------hHHHh---hhccHHHHHHHHhccCChHHHHH
Confidence 2222221 1110 1111111111100 00000 01226788889999999999999
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--C
Q 000201 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--T 1563 (1866)
Q Consensus 1486 a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~ 1563 (1866)
+...+|++++.+ .+.+.|+...+++.+...+.. ..-.+-..|..++|++..++|...++|+..++..++..++.+ .
T Consensus 682 ~FALLGDltk~c-~~~v~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~ 759 (885)
T KOG2023|consen 682 AFALLGDLTKAC-FEHVIPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTP 759 (885)
T ss_pred HHHHHHHHHHHH-HHhccchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCch
Confidence 999999999998 778999988887766654433 234677889999999999999999999998888888887776 5
Q ss_pred HHHHHHHHHHHHHHHhc-----cCChhhHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Q 000201 1564 RTVRSSAALALGKLSAL-----STRVDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 1637 (1866)
Q Consensus 1564 ~~vR~~Aa~aLg~L~~~-----~~~~~~~l~~L~~~l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l 1637 (1866)
.++-...+..+|++..+ .|+++.++......+++ .|.+-+.+++..+..++...+..+. ....-+...+.+ .
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv-~~~~f~c~aiAs-w 837 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV-SSFIFICDAIAS-W 837 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh-hhhHHHHHHHhc-c
Confidence 68889999999999543 46777788887777765 3567799999999999876555443 122222222222 2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcC
Q 000201 1638 YHDDDHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1638 ~~~~~~vr~~aa~~l~~L~~~~~ 1660 (1866)
.+.++..|....+.|.......+
T Consensus 838 ~np~~~l~~~f~kiL~g~k~qvg 860 (885)
T KOG2023|consen 838 SNPEDDLRDEFYKILQGFKNQVG 860 (885)
T ss_pred cChHHHHHHHHHHHHHHHHHHhh
Confidence 34456667666666655544444
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=9.4e-23 Score=275.52 Aligned_cols=1342 Identities=15% Similarity=0.144 Sum_probs=762.1
Q ss_pred hhhhhhcCCC--CHHHHHHHHHHHHHHHHhCCCc---h---HHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHh
Q 000201 370 SGLFKALSHS--NYNVRLAAAEALATALDEYPDS---I---QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSA 441 (1866)
Q Consensus 370 ~~ll~~l~~~--~~~vr~~aa~~l~~~~~~~~~~---~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~ 441 (1866)
..+++.|.+. +...|+.+...|..+.+..++. + .+.+..|.... .. . ...+|..++.+|..+
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL----~s-g-----~~~vk~nAaaaL~nL 85 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLL----RS-G-----TLGAKVNAAAVLGVL 85 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHH----cC-C-----CHHHHHHHHHHHHHH
Confidence 5566666654 6677888888887776544331 1 11233333322 11 1 245777777778877
Q ss_pred hhhc-------CCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhccc-c------hhhhHHHHHHhhcCCCCCh
Q 000201 442 ADVL-------RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-N------VSLLFPIFENYLNKKASDE 507 (1866)
Q Consensus 442 ~~~~-------~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~-~------~~~ll~~le~~L~~~~~~~ 507 (1866)
+.+- ...-++.++ ..|.+.+.+.|..+..+...+-..+..+ + ....+|.|-.++.+...
T Consensus 86 S~~e~nk~~Iv~~GaIppLV-----~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk-- 158 (2102)
T PLN03200 86 CKEEDLRVKVLLGGCIPPLL-----SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK-- 158 (2102)
T ss_pred hcCHHHHHHHHHcCChHHHH-----HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch--
Confidence 6531 111222222 2345667888888887766654332111 1 13345555555554332
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccCCcc-hH-HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhh-----hHHHHHHHH
Q 000201 508 EKYDLVREGVVIFTGALAKHLAKDDPK-VH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLL 580 (1866)
Q Consensus 508 ~~~~~vr~~av~~l~~i~~~l~~~~~~-~~-~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ll 580 (1866)
.+..+++.++..|..++.+-+..... ++ ..++.++..|+++++..|..++.++..++....+. ....++.++
T Consensus 159 -~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV 237 (2102)
T PLN03200 159 -QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLL 237 (2102)
T ss_pred -hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 12346777788888888654322111 12 37888999999999999988888776555432211 123356666
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHhhhC--cchhhhcchHHHHHHHHhCCC--------cHHHHHHHHHHHHHHHHHhCcC
Q 000201 581 DQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRN--------SAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 581 ~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~l~~~~ii~~L~~~i~~~~--------~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.-|.++++..+|..|+++|..++.+-. ...+...+.+|.|.+.+.... +...++-|+.+++.|+.+...
T Consensus 238 ~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~- 316 (2102)
T PLN03200 238 KLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSA- 316 (2102)
T ss_pred HHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchh-
Confidence 655445566899999999999997421 122334567888887775322 123366788888888865322
Q ss_pred chhcHH---------------------------------------hHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhhcH
Q 000201 651 FEPYVI---------------------------------------QMLPLLLVAFSDQVVA-VREAAECAARAMMSQLSA 690 (1866)
Q Consensus 651 ~~p~v~---------------------------------------~llp~ll~~~~D~~~~-VR~~a~~al~~i~~~l~~ 690 (1866)
+-+++. .+.+.|.+++.++++. +.+.+.+++..++.+..-
T Consensus 317 ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l 396 (2102)
T PLN03200 317 LILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYL 396 (2102)
T ss_pred hHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHH
Confidence 111110 1123333444433333 234444444333222211
Q ss_pred h-hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 691 Q-GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 691 ~-~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
. .+ ....+.|+..+...+-.++..++..|.+++.+..+..... -...+|.|+++|...++.+|..|+++++.++..
T Consensus 397 ~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 397 SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0 01 2234556666677778899999999999997755432211 125789999999999999999999999999863
Q ss_pred ccch--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh--hhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 IKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i~~~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l--~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
-.+. .+ ...+|.|.+.+..++..++ +|...+.+...........+ ...+|.|...+++.+++.|..++.++.+
T Consensus 477 ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~n 556 (2102)
T PLN03200 477 VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTK 556 (2102)
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3221 11 4689999999998888777 57777766332110001112 3568889999999999999999999999
Q ss_pred HhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-------hhhHHHHHHHhcccCCCHHHH
Q 000201 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-------~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+... ++.. .++.+..++...++.++..+.++++.+......+. ....++.|.+.+.+++ ...+
T Consensus 557 Li~~-~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ik 626 (2102)
T PLN03200 557 LVRT-ADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQ 626 (2102)
T ss_pred HHhc-cchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHH
Confidence 9873 2321 33556667888888999999999999877444321 1357788888887664 4588
Q ss_pred HHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh-HhHHH-HHHHHHHhhccCC
Q 000201 913 SGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF-QNYLQ-QVLPAILDGLADE 986 (1866)
Q Consensus 913 ~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f-~~~l~-~il~~ll~~l~d~ 986 (1866)
..++..|+.++..-... ...+.+|.++..+.+.+..++..+.++++++.......- ..++. .++|++.+.+.+.
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 89999999888643221 235678999999999999999999999999997443321 22333 4899999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhccc--ch-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcch
Q 000201 987 NESVRDAALGAGHVLVEHYATT--SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1063 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~--~i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~ 1063 (1866)
+.+++..++.++..+...-... .. ...+|.+.+.+.+.+.+.|..+...+..+....+ .+
T Consensus 707 d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~------------~~----- 769 (2102)
T PLN03200 707 SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP------------VD----- 769 (2102)
T ss_pred ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC------------hh-----
Confidence 9999999999999887643211 11 2357888888888889999999999988865422 00
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHhhc--------ChhhHHHhHHHHHHHHHHhhcC
Q 000201 1064 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA--ALHVWKTIVAN--------TPKTLKEIMPVLMNTLISSLAS 1133 (1866)
Q Consensus 1064 e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~--A~~~l~~l~~~--------~p~~l~~~l~~l~~~L~~~l~~ 1133 (1866)
+.....+...| .+..|...++..+...-.. |++++..++.. .|+..---.|.-+..+++++.+
T Consensus 770 -~~~~~~~~~~g------~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~ 842 (2102)
T PLN03200 770 -DVLKDSVQCRG------TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAE 842 (2102)
T ss_pred -HHHHHHHHHhC------cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHc
Confidence 00111112222 3444444454444444444 88888877752 1333333345556778888899
Q ss_pred CCHHHHHHHHHHHHHHHHHhc----cc--cccchHHHHh-cccCCCCccchhhHHHHHHHHHHhhchhhH-----HhhHh
Q 000201 1134 SSSERRQVAGRALGELVRKLG----ER--VLPSIIPILS-RGLKDPSASRRQGVCIGLSEVMASAGKSQL-----LSFMD 1201 (1866)
Q Consensus 1134 ~~~~~R~~A~~~L~~lv~~~~----~~--~l~~llp~L~-~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-----~~~l~ 1201 (1866)
.++.+...|...|.++|+.-+ +. ..+..+..+. +.+++++.++|.+....|-.-.+.+....+ ..|..
T Consensus 843 ~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (2102)
T PLN03200 843 GHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLK 922 (2102)
T ss_pred CChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHH
Confidence 999999999999999997432 11 1233333332 345677889998876655443333322111 23555
Q ss_pred hHHHHHHHhhcCCc------HHHHHHHHHHHHH-HHHHh------ch-hhHhh-HHHHHHHhccCCCch-------hHHH
Q 000201 1202 ELIPTIRTALCDSI------LEVRESAGLAFST-LFKSA------GM-QAIDE-IVPTLLHALEDDQTS-------DTAL 1259 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~------~~vr~~A~~al~~-l~~~~------g~-~~~~~-ilp~Ll~~L~~~~~~-------~~al 1259 (1866)
.++..+...+...+ .+++.... .... .+... ++ ....+ +-=.|+..+-+.+.. .+++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~ 1001 (2102)
T PLN03200 923 LLIQALVDMLKQNSKKESLSIEIQTPRG-FLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGI 1001 (2102)
T ss_pred HHHHHHHHHHhccCcccccceeecCCcc-chhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccH
Confidence 66666655543211 11111000 0000 00000 00 00111 111333333222111 2344
Q ss_pred HHHHHHhhccccccchhhhhhhhcCCccchhHH-----HHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1260 DGLKQILSVRTTAVLPHILPKLVHLPLSAFNAH-----ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1260 ~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~-----al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
+++.+-++.+... |. - ........ -++.+.+-..-...+-.-.++|.|...+++++..-|..+..+
T Consensus 1002 ~~~~~~~~~~~~~--~q----~---~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1072 (2102)
T PLN03200 1002 EVLTEKLASYTSN--RQ----A---EFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQA 1072 (2102)
T ss_pred HHHHHHHHhhccC--cc----c---cccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHH
Confidence 4444322211000 11 0 00000011 111111111111223344556666666666655556666666
Q ss_pred HhHhhhccc-----------------------hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHH
Q 000201 1335 AETVTLVID-----------------------EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNM 1391 (1866)
Q Consensus 1335 l~~l~~~~~-----------------------~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~i 1391 (1866)
+..++..-+ +..+..+.....+. .-+|.--...+..+|+.............
T Consensus 1073 ~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~-----~l~~~~~~~~le~lf~~~~ir~~~~a~~~ 1147 (2102)
T PLN03200 1073 LASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEF-----SLVRNPDQVALERLFRVEDIRVGATARKA 1147 (2102)
T ss_pred HHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHh-----hccccHHHHHHHHHhhhhhhcchHHHHHH
Confidence 664443110 01111121111111 11222233456667766555566667788
Q ss_pred HHHHHHHhCCCC--hhHHHHHHHHHHHHHhcCCcc--hhh--hhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCC---
Q 000201 1392 ISTLIVLLSDSD--STTVAAAWEALSRVVASVPKE--VQP--SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK--- 1462 (1866)
Q Consensus 1392 l~~L~~ll~d~~--~~v~~~A~~aL~~l~~~~~~~--~l~--~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~--- 1462 (1866)
++.|..+++... +.+|..|...|..+.+..... .+. ..++.+...+.................+ +..+.
T Consensus 1148 Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~I--L~~~~e~~ 1225 (2102)
T PLN03200 1148 IPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRI--LFSSPELR 1225 (2102)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHH--HhCCHHHH
Confidence 888999888544 467888888888888654421 100 1122222222211000000000000000 00000
Q ss_pred ---CccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC-------hhhhhhhhh-----------hhhHHHHHHhcCCC
Q 000201 1463 ---ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS-------EQSLKEFVI-----------PITGPLIRIIGDRF 1521 (1866)
Q Consensus 1463 ---~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~-------~~~l~~~v~-----------~i~~~Li~~l~~~~ 1521 (1866)
.-...+..++..+..|+.+.|..++..|..+...-. .+.+.|.+. ..+..|++++.++.
T Consensus 1226 ~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~i 1305 (2102)
T PLN03200 1226 RHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNP 1305 (2102)
T ss_pred HHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCC
Confidence 011245677778888999999999999988876531 012223322 45566677777654
Q ss_pred CH-----HHHHHHHHH----------------HHHHHHhc-CC-C--CCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000201 1522 PW-----QVKSAILST----------------LSIIIRKG-GI-A--LKPFLPQLQTTFIKCLQDSTRTVRSSAALALGK 1576 (1866)
Q Consensus 1522 ~~-----~vr~~al~~----------------L~~L~~~~-~~-~--~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~ 1576 (1866)
+. +++.+++.. +..++... +. . .++---..++.++..+.|+...+...|..+|-.
T Consensus 1306 s~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~ 1385 (2102)
T PLN03200 1306 SKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDR 1385 (2102)
T ss_pred ChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHH
Confidence 33 234466666 33333210 00 1 111112345667777777666668888888888
Q ss_pred HHhcc---------CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHH
Q 000201 1577 LSALS---------TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVS 1647 (1866)
Q Consensus 1577 L~~~~---------~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~ 1647 (1866)
|.... +-..|++. .+-..+....+.++.+|..+....+....+....-++..+...+....+.+...
T Consensus 1386 Lc~~eegre~~~~h~a~vplV~----~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkek 1461 (2102)
T PLN03200 1386 LLDDEQLAELVAAHGAVVPLVG----LVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSA 1461 (2102)
T ss_pred HhcCHhhHHHHHHcCChhhHHH----HHHcCCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHH
Confidence 85432 22333443 222234566788888887776332222332223333444444444456778888
Q ss_pred HHHHHHHHHhhcCh----hH---HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccC-CcchHHHHHHHHhhhc
Q 000201 1648 AASILGIMSQCMED----GQ---LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLK 1719 (1866)
Q Consensus 1648 aa~~l~~L~~~~~~----~~---~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~~~~~l~~~~~ 1719 (1866)
+++++.-+..+-.- +. ..+++-.++ +... +..+.|++..+|..++++. +..-. .--....+..++..+.
T Consensus 1462 AaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~al~~l~~i~e~~-~~~~~~~~~~~~~i~~Li~lL~ 1538 (2102)
T PLN03200 1462 IAELLRILTNNSSIAKGQSAAKVVEPLFLLLT-RPDL-GTWGQHSALQALVNILEKP-QCLASLTLTPSQAIEPLIPLLE 1538 (2102)
T ss_pred HHHHHHHhccchhhccccchhhhhHHHHHHHh-ccCc-ceecHHHHHHHHHHHHhCc-chhhhhhcCccchHHHHHHHHc
Confidence 88886665432110 11 223333222 2222 2224566777777777663 22211 1123457889999999
Q ss_pred CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhh
Q 000201 1720 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791 (1866)
Q Consensus 1720 ~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~ 1791 (1866)
|.++.+++.|+++++.++....-++ +..-...+.++++.+.+..+..|+.|+.++......-|..+..+
T Consensus 1539 s~~~~vqe~aa~ll~~l~~~~~~~~---~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ 1607 (2102)
T PLN03200 1539 SPSQAVQQLAAELLSHLLAEEHFQQ---DITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADA 1607 (2102)
T ss_pred CCcHHHHHHHHHHHHHHhcchHHhh---hhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHc
Confidence 9999999999999998887653211 12334578899999999999999999999998888877777665
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-25 Score=264.08 Aligned_cols=732 Identities=17% Similarity=0.272 Sum_probs=510.8
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh--hHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC
Q 000201 747 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 824 (1866)
Q Consensus 747 D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d 824 (1866)
.+++.+|..|-.-|.++.. ..+..++..|...+.|++. ..|.+.... |...+..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~--------------------LKN~L~a 67 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQ--------------------LKNSLTA 67 (859)
T ss_pred CCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHH--------------------Hhhhhcc
Confidence 4578899999988888764 3455666666666655543 234222211 1233344
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHhc
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDAL 903 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-~g~~~~~~l~~~L~~~L 903 (1866)
++++.+....+-.-.+-. + .-+++-..++..|..+.|..+..|..+++.++.. ++...++++++.|...+
T Consensus 68 kd~~~k~~~~qRWl~l~~------e---~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv 138 (859)
T KOG1241|consen 68 KDPERKQQYQQRWLQLPA------E---IREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNV 138 (859)
T ss_pred CCHHHHHHHHHHHHcCCH------H---HHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhc
Confidence 444554443222111111 1 1234556677888889999999999999999984 55568999999999988
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHH--HHH
Q 000201 904 KSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYL--QQV 975 (1866)
Q Consensus 904 ~~~~~~~~R~~a~~~L~~l~~~~g~~~l----~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~i 975 (1866)
.++....++..+++++|-++....++.+ ..++..++...+. ++..+|-++..++-.--...+..|..-. +.+
T Consensus 139 ~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i 218 (859)
T KOG1241|consen 139 GEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYI 218 (859)
T ss_pred ccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee
Confidence 8776666889999999999999988744 4566777776654 4789999888887765555554443222 235
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc---h-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 976 LPAILDGLADENESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 976 l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~---i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
+......-..++.+|+.+|+.++..|+..|.+.. + +.+.+-....+++++..|...+++....+...
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE--------- 289 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE--------- 289 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---------
Confidence 5666666677889999999999999998776542 1 11444444556677777777777766654310
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l 1131 (1866)
+.+ +.-..|+. .+ .+..+.- ..++ ...++.++|.+++.+.+.=
T Consensus 290 --------EiD-------~~~e~~e~-~d----------~~~~p~~--------~~fa---~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 290 --------EID-------LAIEYGEA-VD----------QGLPPSS--------KYFA---RQALQDVVPVLLELLTKQD 332 (859)
T ss_pred --------HHH-------HHHHHHHH-hh----------cCCCchh--------hHHH---HHHHhHhhHHHHHHHHhCC
Confidence 000 00000100 00 0000000 0001 1223345666666665432
Q ss_pred c---CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1132 A---SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1132 ~---~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
. +.+|..-.+|..||.-+.+..++.++|.++|++.+.++.++|.-|..+..+++.++..-.+..+.+...+.+|.+.
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii 412 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSII 412 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHH
Confidence 2 3467889999999999999999999999999999999999999999999999999987777788999999999999
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccc
Q 000201 1209 TALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA 1288 (1866)
Q Consensus 1209 ~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~ 1288 (1866)
..++|+.--||+.++.+|+.+++........+
T Consensus 413 ~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~------------------------------------------------ 444 (859)
T KOG1241|consen 413 NLMSDPSLWVKDTAAWTLGRIADFLPEAIINQ------------------------------------------------ 444 (859)
T ss_pred HHhcCchhhhcchHHHHHHHHHhhchhhcccH------------------------------------------------
Confidence 99999999999999999988876432110000
Q ss_pred hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHH
Q 000201 1289 FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRS 1368 (1866)
Q Consensus 1289 ~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~ 1368 (1866)
-++ ..+++.++.++.|+ |++-.+
T Consensus 445 ------------------~~l--------------------------------------~~~l~~l~~gL~De-Prva~N 467 (859)
T KOG1241|consen 445 ------------------ELL--------------------------------------QSKLSALLEGLNDE-PRVASN 467 (859)
T ss_pred ------------------hhh--------------------------------------hHHHHHHHHHhhhC-chHHHH
Confidence 011 22233334444443 555566
Q ss_pred HHHHHHHHHhh---------ccchhhhhHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHhcCCcchhhhhHHHH---
Q 000201 1369 SAYLIGYFYKN---------SKLYLVDEAPNMISTLIVLLSD---SDSTTVAAAWEALSRVVASVPKEVQPSYIKVI--- 1433 (1866)
Q Consensus 1369 a~~~l~~l~~~---------~~~~~~~~~~~il~~L~~ll~d---~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l--- 1433 (1866)
+|+++-.+.+. .+....++++.++..|+..-+- .+.+.|.+|++||..+++..++++.+.+....
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 66666655431 1223447889999999987663 45689999999999999999998776544432
Q ss_pred ----HHHHh----hhhhhhhhhhcCCc--------cccCCcCCCCCccccHHHHHHhhcc-CCHHHHHHHHHHHHHHHhh
Q 000201 1434 ----RDAIS----TSRDKERRKKKGGP--------ILIPGFCLPKALQPLLPIFLQGLIS-GSAELREQAALGLGELIEV 1496 (1866)
Q Consensus 1434 ----~~~l~----~~~~~~~~~~~~~~--------~~l~g~~~~~~l~~ilp~l~~~L~~-~~~~~r~~a~~~L~~l~~~ 1496 (1866)
.+.++ +..++......++. ....|...+.....++..|++.+.+ .+..+.+.|..+++.++..
T Consensus 548 l~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 548 LEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 23333 11111111111111 0011223345556688888888877 4556778899999999999
Q ss_pred cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 000201 1497 TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALAL 1574 (1866)
Q Consensus 1497 ~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aL 1574 (1866)
. +..|..|++.+.|-|.+.++...+.+|..++....|.+.+.++..+.||...+...++++|+++ +++|+-....++
T Consensus 628 L-g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~F 706 (859)
T KOG1241|consen 628 L-GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVF 706 (859)
T ss_pred H-hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHH
Confidence 9 7789999999999999999766678899999999999999999999999999999999999998 899999999999
Q ss_pred HHH-HhccCChhhHHHHHHHHhcc-----CC----------hhHHHHHHHHHHHHHHhcCc----cccHHHHHHHHHHHH
Q 000201 1575 GKL-SALSTRVDPLVGDLLSSLQV-----SD----------AGIREAILTALKGVLKHAGK----SVSSAVKIRVYSVLK 1634 (1866)
Q Consensus 1575 g~L-~~~~~~~~~~l~~L~~~l~~-----~~----------~~vr~~~l~aL~~vi~~~~~----~l~~~~~~~i~~~L~ 1634 (1866)
|.+ ..++.++++|+..++..++. ++ .++|+++++|...++...+. ....++...|+.++.
T Consensus 707 gDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 707 GDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 999 57888999999888777643 11 58899999999999987763 245689999999998
Q ss_pred HhhcCC--CHHHHHHHHHHHHHHHhhcChhH
Q 000201 1635 DLVYHD--DDHVRVSAASILGIMSQCMEDGQ 1663 (1866)
Q Consensus 1635 ~~l~~~--~~~vr~~aa~~l~~L~~~~~~~~ 1663 (1866)
..-.++ ++.+-..++++||.|+..+|.+.
T Consensus 787 ~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~ 817 (859)
T KOG1241|consen 787 RIAAEPDVSEALHAAALGLIGDLATMFGKGV 817 (859)
T ss_pred HHhcCcccchHHHHHHHHHHHHHHHHcccch
Confidence 865544 47788899999999999998644
No 12
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=3.2e-25 Score=279.24 Aligned_cols=619 Identities=17% Similarity=0.225 Sum_probs=446.4
Q ss_pred cchHHHHhcccCCCCccchhhHHHHHHHHHHhhch-hhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000201 1159 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK-SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 1237 (1866)
Q Consensus 1159 ~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~ 1237 (1866)
..+...+...+.++++..|++.|.||-.++..++. ....-..++|...+...|.|.|+-+++.|.+.+|-+++-.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34556677778899999999999999999988873 23445678888999999999999999999999998887766666
Q ss_pred HhhHHHHHHHhccCCC---------------------chhHHHHHHHHHhhccccccchhhhhhhhcCCc-------cch
Q 000201 1238 IDEIVPTLLHALEDDQ---------------------TSDTALDGLKQILSVRTTAVLPHILPKLVHLPL-------SAF 1289 (1866)
Q Consensus 1238 ~~~ilp~Ll~~L~~~~---------------------~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~-------~~~ 1289 (1866)
-..++..|++.|..+. .+++-+..++++++..++.--|.++.++.+-.. +-.
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccc
Confidence 7778888888773321 124578899999999999999999998764221 112
Q ss_pred hHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhc---cchhcHHHHHHHHHhccCCCchhHH
Q 000201 1290 NAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQASIR 1366 (1866)
Q Consensus 1290 ~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~---~~~~~~~~ll~~L~~~l~~~~~~vR 1366 (1866)
.+..++.|++-+|..+.||+++++|.|+.+-.|++..++.++...|+.++.- +-+.++++++..|+..+.+..|++|
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 3566789999999999999999999999999999999999999999999863 3457899999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-chhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhh
Q 000201 1367 RSSAYLIGYFYKNSK-LYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1367 ~~a~~~l~~l~~~~~-~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
.++|.++..+.+..+ .++.+.++.++..+++.++|..+.||++|-.+...+.+-.-+ +.+ .+
T Consensus 1057 easclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr---------~~d---~~----- 1119 (1702)
T KOG0915|consen 1057 EASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVR---------ICD---VT----- 1119 (1702)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hcc---cC-----
Confidence 999999999987654 567889999999999999999999999987766655442211 000 00
Q ss_pred hhhcCCccccCCcCCCCCccccHHHHH-HhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHH
Q 000201 1446 RKKKGGPILIPGFCLPKALQPLLPIFL-QGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ 1524 (1866)
Q Consensus 1446 ~~~~~~~~~l~g~~~~~~l~~ilp~l~-~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~ 1524 (1866)
.|-...+.++.++|.++ +|+++..+++|..++.++.++++.. +..++||.+.+++.|++..+.-.+.-
T Consensus 1120 ----------~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss-g~~lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1120 ----------NGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS-GKELKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred ----------CcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc-hhhhcchhhHHHHHHHHHccccchHH
Confidence 01111134567889888 7888888999999999999999988 67999999999999999988754444
Q ss_pred HHHHHHHHHHHHHHhcCC---CCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCC-h
Q 000201 1525 VKSAILSTLSIIIRKGGI---ALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSD-A 1600 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~~---~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~-~ 1600 (1866)
....++.+.+.=...+.. .... -.+++.++-+|++.-+. ..+..++|.+.+.++.+- -
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~ak-sspmmeTi~~ci~~iD~-----------------~vLeelip~l~el~R~sVgl 1250 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAK-SSPMMETINKCINYIDI-----------------SVLEELIPRLTELVRGSVGL 1250 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhc-CCcHHHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHhccCCC
Confidence 444444442211111100 0000 01123333333322221 234567788888877542 4
Q ss_pred hHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCc
Q 000201 1601 GIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSW 1680 (1866)
Q Consensus 1601 ~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~ 1680 (1866)
+.|..+...+..++...|..+. ||..+++..+...+.+.++.+|...+.+.|.|++.-.++....+++.++.+...+..
T Consensus 1251 ~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~e 1329 (1702)
T KOG0915|consen 1251 GTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDE 1329 (1702)
T ss_pred CcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCC
Confidence 5577777888888889999998 899999999999999999999999999999999999888888888887775544433
Q ss_pred chhhhHHHHHHHHHhhCCCccc--------------------CCc-------------------chHHHHHHH-HhhhcC
Q 000201 1681 AARHGSVLVFATFLRHNPSAIS--------------------MSP-------------------LFLSILDRL-KSSLKD 1720 (1866)
Q Consensus 1681 ~~r~~~~~~L~~~l~~~p~~~~--------------------~~~-------------------~~~~~~~~l-~~~~~~ 1720 (1866)
..+..++-++..+.+++++.+. ..+ +..+++..+ ....++
T Consensus 1330 s~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn 1409 (1702)
T KOG0915|consen 1330 SLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNN 1409 (1702)
T ss_pred CccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccc
Confidence 3232222222214443332210 001 122333333 344555
Q ss_pred CChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHH
Q 000201 1721 EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALA 1800 (1866)
Q Consensus 1721 ~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~ 1800 (1866)
+.+-+|..++.++..........-| ..++..+......++++..++.++--+.++......+...+...++.+.-+++
T Consensus 1410 ~~w~lr~q~Akai~~~a~~~sss~~--~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~ 1487 (1702)
T KOG0915|consen 1410 ESWKLRKQAAKAIRVIAEGLSSSAP--IPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVM 1487 (1702)
T ss_pred hHHHHHHHHHHHHHHHcccccccCC--hHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHH
Confidence 5688898888888877665544322 25777888889999999999999999999998877776666666667766777
Q ss_pred hhhccCcchhhhhHHHHHHHhhcccc
Q 000201 1801 ECLKDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1801 ~~~~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
.++.+.+...|--+..+....+....
T Consensus 1488 ~e~sr~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1488 EEVSRREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHHHHHhHHHHHHHhhhHHHHhhhh
Confidence 77665554444434444444444443
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=6.9e-20 Score=248.16 Aligned_cols=1351 Identities=16% Similarity=0.135 Sum_probs=698.7
Q ss_pred ChhhhhhhcCCCCHHHHHHHHHHHHHHHHhCC-Cc-------hHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000201 368 DYSGLFKALSHSNYNVRLAAAEALATALDEYP-DS-------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439 (1866)
Q Consensus 368 ~~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~-~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 439 (1866)
.++.|+..|.+.+...|..|+.+|..+..... |. ..+.+..|+...... ... ..-++..+..+|.
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~g--sk~-----d~~L~~~Av~AL~ 172 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG--NKQ-----DKVVEGLLTGALR 172 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCC--chh-----hHHHHHHHHHHHH
Confidence 34667888888899999999999988863221 11 123344454433210 000 0124455677888
Q ss_pred HhhhhcCCCChHH-----HHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhc--ccc--hhhhHHHHHHhhcCCCCChhhh
Q 000201 440 SAADVLRTKDLPV-----IMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDN--VSLLFPIFENYLNKKASDEEKY 510 (1866)
Q Consensus 440 ~~~~~~~~~~~~~-----~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g--~~~--~~~ll~~le~~L~~~~~~~~~~ 510 (1866)
+++.+-+.- ... ..+.++ ..+.+.++.++..+..+........+ ... -...+|.|-++|.+.. +
T Consensus 173 nLs~~~en~-~~~IIeaGaVp~LV-~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~-----~ 245 (2102)
T PLN03200 173 NLCGSTDGF-WSATLEAGGVDILV-KLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN-----E 245 (2102)
T ss_pred HHhcCccch-HHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC-----C
Confidence 887643321 111 222232 34467788888887765443332211 110 1244566667765422 1
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcch--HHHHHHHHHhcCCCcHH---------HHHHHHhhhhhhhHhhhhhhHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLNTPSEA---------VQRAVSSCLSPLMQSMQDEAPTLVSRL 579 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~~~~~--~~l~~~l~~~l~~~~~~---------v~~~~~~~l~~lv~~~~~~~~~~l~~l 579 (1866)
..+|+.|+-+|+.|+.+=......+ ...++.+++.+..++.+ +++.+.-++..+.... ...++.+
T Consensus 246 ~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----~~ll~~L 321 (2102)
T PLN03200 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----SALILYL 321 (2102)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc----hhhHHHH
Confidence 4689999999999996411100001 13466677777666533 3555555565554332 2333333
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHhhhCc--c---hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh--CcCch
Q 000201 580 LDQLMKSDKYGERRGAAFGLAGVVKGFGI--S---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFE 652 (1866)
Q Consensus 580 l~~L~~~~~~~~R~~A~~~L~~l~~~~g~--~---~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l--~~~~~ 652 (1866)
-+.+....+...--.+..+++.++..... + .+....+.+.|.+.+.++++....+.+..++..+.... .+.+.
T Consensus 322 ~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~ 401 (2102)
T PLN03200 322 GELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLN 401 (2102)
T ss_pred HHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Confidence 33332222333333445556555443221 1 12223456788888887665443444444443322110 01010
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
-....+.|..++...+..++..+.+++..++..-... .+ ...+|.|++.|.+++...|..++..|+.++.+..+
T Consensus 402 --~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 402 --HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred --hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 1245677888888888999999999999988642221 11 44789999999999999999999999999987654
Q ss_pred hHH-hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-h-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccc
Q 000201 729 QLS-QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF 802 (1866)
Q Consensus 729 ~~~-~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~ 802 (1866)
+.. -.-...+|.|.++|..+++++|+.|+|+|.+++..-.+ . .+ ...+|.|++.+.+.+...+ .++.+|.....
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 321 11247899999999999999999999999999873211 1 23 3578889999988876665 46666655322
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh---hHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP---YIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~---~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
.. + ...++.+...+...++.++..+.+.++++...... .+... -....++.|.+++.+++..+++.|+.+
T Consensus 560 ~~--d----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~-~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~i 632 (2102)
T PLN03200 560 TA--D----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASL-EDLVREGSAANDALRTLIQLLSSSKEETQEKAASV 632 (2102)
T ss_pred cc--c----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcch-hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1 12346666778888889999999999999774433 22111 023578999999999999999999999
Q ss_pred HHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-H-HHHHHHHHHHhccCChhHH
Q 000201 880 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-F-EHILPDIIRNCSHQRASVR 950 (1866)
Q Consensus 880 L~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l-~~ll~~l~~~l~~~~~~vR 950 (1866)
|..++..-.+. ...+.+|.++..+.+.+ ..++..++++|+.+......+ + . ...+|.+.+.+.+.+..++
T Consensus 633 LsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~ 711 (2102)
T PLN03200 633 LADIFSSRQDLCESLATDEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA 711 (2102)
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH
Confidence 99998743321 23356778888887654 448899999999988743322 1 1 3468889999999999999
Q ss_pred hHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc-h------hchHHhHhcccCC
Q 000201 951 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-L------PLLLPAVEDGIFN 1023 (1866)
Q Consensus 951 ~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~-i------~~llp~l~~~l~d 1023 (1866)
+.++.++..++......-+-.-...++++...+.+.++++|+.|..++..+....+... + .-.+..+.+.+..
T Consensus 712 e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~ 791 (2102)
T PLN03200 712 EQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS 791 (2102)
T ss_pred HHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc
Confidence 99999999998766432111224578999999999999999999999998887665332 1 1133444444444
Q ss_pred CchHHHH--HHHHHHHHHHHHhcCC-cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHH
Q 000201 1024 DNWRIRQ--SSVELLGDLLFKVAGT-SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQA 1100 (1866)
Q Consensus 1024 ~~w~vR~--~s~~ll~~ll~~~~~~-~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~ 1100 (1866)
.+-+.-. .+++.+..+.+.-.+. ..+.. ...+.+.-+ -+..|..++.+.++.+...
T Consensus 792 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~---------------~~~~~e~p~------~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 792 TDLDSSATSEALEALALLARTKGGANFSHPP---------------WAVLAEVPS------SLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred CCcchhhHHHHHHHHHHHHhhcccCCCCCCc---------------hhhHHhccC------chHHHHHHHHcCChHHHHH
Confidence 4444322 3556666554421110 00000 011122111 2344445667788889999
Q ss_pred HHHHHHHHhhcChhhHHHhH---HHHHHHHHHh-hcCCCHHHH---------------HHHHHHHH------HHHHHh--
Q 000201 1101 ALHVWKTIVANTPKTLKEIM---PVLMNTLISS-LASSSSERR---------------QVAGRALG------ELVRKL-- 1153 (1866)
Q Consensus 1101 A~~~l~~l~~~~p~~l~~~l---~~l~~~L~~~-l~~~~~~~R---------------~~A~~~L~------~lv~~~-- 1153 (1866)
|++++..++...|..+.+++ +..+..+..+ +++++.++| +....+|. .++..+
T Consensus 851 ai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (2102)
T PLN03200 851 AIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVD 930 (2102)
T ss_pred HHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999887765444433 2222222222 223333332 22222221 111111
Q ss_pred --cc---------ccc---------------------------cchHHHHhcccCCCCccch-----hhHHHHHHHHHHh
Q 000201 1154 --GE---------RVL---------------------------PSIIPILSRGLKDPSASRR-----QGVCIGLSEVMAS 1190 (1866)
Q Consensus 1154 --~~---------~~l---------------------------~~llp~L~~~L~d~~~~vr-----~~a~~~L~~li~~ 1190 (1866)
.. .+. +.+-=+|...+.+.++.-| .+++.+|.+-+..
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~ 1010 (2102)
T PLN03200 931 MLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLAS 1010 (2102)
T ss_pred HHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHh
Confidence 00 000 0011111111111111111 1223333331111
Q ss_pred hc--hh-hHHhhH------------------------hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhH-----
Q 000201 1191 AG--KS-QLLSFM------------------------DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI----- 1238 (1866)
Q Consensus 1191 ~~--~~-~l~~~l------------------------~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~----- 1238 (1866)
+. +. ..++-- -..+|.+-..+...+.--|.-|++++.++....+....
T Consensus 1011 ~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~ 1090 (2102)
T PLN03200 1011 YTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVAN 1090 (2102)
T ss_pred hccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhc
Confidence 11 00 000000 11112222222222222233444444433221110000
Q ss_pred hhHHHHHHHhccCC------------------CchhHHHHHHHHHhhc----cccccchhhhhhhhcCCcc-chhHHHHH
Q 000201 1239 DEIVPTLLHALEDD------------------QTSDTALDGLKQILSV----RTTAVLPHILPKLVHLPLS-AFNAHALG 1295 (1866)
Q Consensus 1239 ~~ilp~Ll~~L~~~------------------~~~~~al~~l~~il~~----~~~~ilp~Lip~L~~~~~~-~~~~~al~ 1295 (1866)
...+..++..+... +.+..+++.|-++=.. .....+|.++..|...+-+ ..+..|+.
T Consensus 1091 ~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~ 1170 (2102)
T PLN03200 1091 SGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALG 1170 (2102)
T ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHH
Confidence 00111111111110 0112233333111111 1234566666666533321 12445555
Q ss_pred HHHHHhC-CCchhh---HhhHHHHHHHhcCCC-CHHHHHHHHHHHhHhhhccchhc-----HHHHHHHHHhccCCCchhH
Q 000201 1296 ALAEVAG-PGLNFH---LGTILPALLSAMGDD-DMDVQSLAKEAAETVTLVIDEEG-----VESLVSELLKGVGDNQASI 1365 (1866)
Q Consensus 1296 ~La~~~g-~~l~~~---l~~il~~L~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~-----~~~ll~~L~~~l~~~~~~v 1365 (1866)
.|-..+. ..-++. -...++.|...+... .......+.+.+..+. .+++. -...++.|...++.++...
T Consensus 1171 kLr~LA~EserNR~~maeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~--~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~a 1248 (2102)
T PLN03200 1171 LLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILF--SSPELRRHESAFGAVNQLVAVLRLGSRSA 1248 (2102)
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHHHhcCccchhHHHHHHHHHHh--CCHHHHHHhhhhhHHHHHHHHHhcCCHHH
Confidence 4444331 111110 012233333322211 1112333334444332 22211 2345677777788888999
Q ss_pred HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcch-hh-----hhHHHHHHHHhh
Q 000201 1366 RRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEV-QP-----SYIKVIRDAIST 1439 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~-l~-----~l~~~l~~~l~~ 1439 (1866)
|.+++.++..++......-.....+.++.|..++..........++++|-.+++...... .- ..+..+.+.+..
T Consensus 1249 R~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~ 1328 (2102)
T PLN03200 1249 RYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSS 1328 (2102)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhccc
Confidence 999999999987653211111223455556666665555666666666666665432110 00 111111111111
Q ss_pred hhhhhhhhhcCCc-cccCCc--CCCCCc-cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHH
Q 000201 1440 SRDKERRKKKGGP-ILIPGF--CLPKAL-QPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLI 1514 (1866)
Q Consensus 1440 ~~~~~~~~~~~~~-~~l~g~--~~~~~l-~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~-~~l~~~v~~i~~~Li 1514 (1866)
..........-.. ..+.+- .-.+.. ...++.|++.+.++....++.++..|..++....+ +.+..| ...-|++
T Consensus 1329 ~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h--~a~vplV 1406 (2102)
T PLN03200 1329 DSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAH--GAVVPLV 1406 (2102)
T ss_pred ccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHc--CChhhHH
Confidence 1000000000000 000000 000000 12567777777776666678888888888764321 112122 1222333
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---hc--cCChhhHH
Q 000201 1515 RIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL-PQLQTTFIKCLQDSTRTVRSSAALALGKLS---AL--STRVDPLV 1588 (1866)
Q Consensus 1515 ~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l-p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~---~~--~~~~~~~l 1588 (1866)
..+.. .+......++.+|..++..-+.....++ --.+..++-.|+......+..|+..|.-+- .+ ++...+.+
T Consensus 1407 ~~ilr-vS~~a~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~ 1485 (2102)
T PLN03200 1407 GLVVG-TNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVV 1485 (2102)
T ss_pred HHHHc-CCHHHHHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhh
Confidence 33322 3566677788888777622111111111 112333444555667888888888876552 12 23344455
Q ss_pred HHHHHHhccCC--hhHHHHHHHHHHHHHHhcCccccH-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH--
Q 000201 1589 GDLLSSLQVSD--AGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ-- 1663 (1866)
Q Consensus 1589 ~~L~~~l~~~~--~~vr~~~l~aL~~vi~~~~~~l~~-~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~-- 1663 (1866)
..++-.+-.++ ...+.+++++|-.++.+....-.. -....++..|...+.+++..+++.++++++.+.....-..
T Consensus 1486 ~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~ 1565 (2102)
T PLN03200 1486 EPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDI 1565 (2102)
T ss_pred HHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhh
Confidence 55554444333 455888999999998875432110 1134566777778899999999999999998764321110
Q ss_pred H-HHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCCh----hHHHHHHHHhHHHHh
Q 000201 1664 L-ADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF----PLREASTKALGRLLL 1738 (1866)
Q Consensus 1664 ~-~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~----~~r~~a~~alg~ll~ 1738 (1866)
. ...+..++..........++.++.+|..+-..=|..+....-..++...+. +.+| ..-..|...+..++.
T Consensus 1566 ~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~----~~d~~~~~~l~~~a~~vl~n~~~ 1641 (2102)
T PLN03200 1566 TTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVIL----QADPQPPHALWESAASVLSNILR 1641 (2102)
T ss_pred hcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHH----ccCCCCchhhHHHHHHHHHHHhc
Confidence 0 111222333334444455666666663332222222222222222222222 2232 344555555555544
Q ss_pred hhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000201 1739 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAK 1782 (1866)
Q Consensus 1739 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~ 1782 (1866)
......+ .=-+..+++.+++.+-.++..++.++-.++.
T Consensus 1642 ~~~~~~~------~v~~~~lvkl~~s~~e~~~~~a~~~l~~~~~ 1679 (2102)
T PLN03200 1642 FSSEYYF------EVPVAVLVKLLRSTSESTVVVALNALLVLER 1679 (2102)
T ss_pred cCceeEE------EeeHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3322111 1134445555556666666666666665554
No 14
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=4e-20 Score=233.87 Aligned_cols=793 Identities=17% Similarity=0.214 Sum_probs=503.9
Q ss_pred HHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHH
Q 000201 637 LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 637 l~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a 715 (1866)
+.++-......++.+..+..+.+-.+...+.+.+...|..+................ ..+...+...+..+....+++.
T Consensus 556 l~~~~~~~s~~pE~~~~~~~~~~~~~~sll~~~~~~mr~~~a~~y~~~~~~~~~~e~~~~l~~~i~~~~~~~~le~~hg~ 635 (1702)
T KOG0915|consen 556 LECLYTVVSYAPEMVALKFSDKIEWLRSLLSNTSESMRESVAQLYGMASCALSDAESCSELSNLISNILQPKKLEAQHGG 635 (1702)
T ss_pred HHHHHHHHhhhhHHhhHhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhccccccchhhhe
Confidence 333333444455566666677777788889999999999998888877766655544 4455544555555666777777
Q ss_pred HHHHHHHHhhCh----hhHHhhhcchhHHHhhhccCCC--hHHHHHHHHHHHHHHhhcc------------------chh
Q 000201 716 VQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTH--PKVQSAGQTALQQVGSVIK------------------NPE 771 (1866)
Q Consensus 716 ~~~L~~l~~~~~----~~~~~~l~~iv~~l~~~L~D~~--~~VR~aA~~aL~~l~~~i~------------------~~~ 771 (1866)
+..+|-...++- ......=...+|.+.+..++-. +-+..++..++..+.+.-. .+.
T Consensus 636 l~~~g~~~~~~la~~~t~~~~i~~~a~~~~v~~v~~le~a~~l~s~~~~~~~~id~~~~i~~~~~~~~~~~~~~~~~~~~ 715 (1702)
T KOG0915|consen 636 LLAVGFTSARCLARIKTVSKAITQIALPYLVNVVNSLEEAPLLASAAVEALSHIDKTGAIPNLVADSSLGTQVREDSQER 715 (1702)
T ss_pred eeeeecccccchhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHhhhccccccchhHhhhcccccccCCCccc
Confidence 766664443321 0000000123344444444221 2466666666665554211 010
Q ss_pred H------H--hHHHHHHHhhCCCCh--hHH-HHHHH------------------------------------HHhc----
Q 000201 772 I------A--SLVPTLLMGLTDPND--HTK-YSLDI------------------------------------LLQT---- 800 (1866)
Q Consensus 772 i------~--~lv~~L~~~l~d~~~--~vr-~al~~------------------------------------L~~~---- 800 (1866)
. . ..+..++..+.++.. ..+ .++.. +..+
T Consensus 716 ~sk~~s~~kv~~~glll~~i~s~~~~~~~~e~~l~yl~~g~g~~~~~~l~~~~l~~s~~~k~~~l~~~i~e~~~~~~~~~ 795 (1702)
T KOG0915|consen 716 LSKLLSGDKVQKFGLLLQHICSSKASSKILEIALGYLFSGSGDKAEEILFAAGLALSFLWKQVPLTFDIGEAINYTALGT 795 (1702)
T ss_pred cccccccchhhhHHHHHhhhcChhhhhhHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhccc
Confidence 0 0 123333333333211 000 01000 0000
Q ss_pred --cccc--------cCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 801 --TFVN--------TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 801 --~~~~--------~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.+.. .........+...+.+++.+.++..|.+.|-++-.+...++..+......+.|...+..+|.|.+.
T Consensus 796 ds~~le~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dE 875 (1702)
T KOG0915|consen 796 DSNFLEEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDE 875 (1702)
T ss_pred chhhcccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHH
Confidence 0000 011123345666777888899999999999999999998887777788888999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHH---------------------HHHHHHHHHHHHHHHhChh
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV---------------------ERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~---------------------~R~~a~~~L~~l~~~~g~~ 929 (1866)
-++..|.+.+|-+.+--+...-..++..|++++...+... -...+.+.|-.++..+|.
T Consensus 876 f~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q- 954 (1702)
T KOG0915|consen 876 FSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ- 954 (1702)
T ss_pred HHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-
Confidence 9999999999988875444455678888887775422100 001112223333333332
Q ss_pred HHHHHHHHHHHHhccC-ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 930 YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+.++-.+++..++. .|.-|.|+...|+.++...|...+||+.+++|.++++-.||+..|+.+...-+..++..-
T Consensus 955 --PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--- 1029 (1702)
T KOG0915|consen 955 --PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDS--- 1029 (1702)
T ss_pred --hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccCh---
Confidence 45667777777765 799999999999999999999999999999999999999999999876554444433210
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
+..+ ++++++++..|..
T Consensus 1030 -----------------------------------------------------------k~~v----d~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 1030 -----------------------------------------------------------KKVV----DEYLNEILDELLV 1046 (1702)
T ss_pred -----------------------------------------------------------HHHH----HHHHHHHHHHHHH
Confidence 0001 1355566666666
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHH---HHHHHHHHHhcc--------c
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAG---RALGELVRKLGE--------R 1156 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~---~~L~~lv~~~~~--------~ 1156 (1866)
.+.+..|.||++++-++..+....| ..+.+.+|.++..+++.+.|-.+.+|.+|- .+|+.++....+ .
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 6777778888888888888877655 346778899999999988888889998864 455666555433 2
Q ss_pred cccchHHHHhc-ccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHH-HHHHHHHHHHHhc
Q 000201 1157 VLPSIIPILSR-GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRES-AGLAFSTLFKSAG 1234 (1866)
Q Consensus 1157 ~l~~llp~L~~-~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~-A~~al~~l~~~~g 1234 (1866)
++..++|.+.. ++-+..+++|..++..+..+....+ ..+.||.++++|.+......-++.|-.. ++++.+.-.+
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e--- 1202 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETE--- 1202 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHH---
Confidence 57788898754 5557788899999999988876654 5789999999999999887766655332 2222111111
Q ss_pred hhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcC-------CccchhHHHHHHHHHHhCCCchh
Q 000201 1235 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHL-------PLSAFNAHALGALAEVAGPGLNF 1307 (1866)
Q Consensus 1235 ~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~-------~~~~~~~~al~~La~~~g~~l~~ 1307 (1866)
++|. +-... ..+...++++..++......++..++|.+..- +.+...+..+..|+...|..+.|
T Consensus 1203 --alDt----~R~s~---aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1203 --ALDT----LRASA---AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred --HHHH----HHHhh---hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 1110 00000 00011222333333333334444455544321 12234466777888889999999
Q ss_pred hHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhh
Q 000201 1308 HLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDE 1387 (1866)
Q Consensus 1308 ~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~ 1387 (1866)
|...++..++..++|.++.+|.....+++.++..-.++....++..+...+-.+....+..+|..+..+..+....+..|
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~ 1353 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNY 1353 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999876777777888877777655555555777777777888888889999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcC--CCCCcc
Q 000201 1388 APNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFC--LPKALQ 1465 (1866)
Q Consensus 1388 ~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~--~~~~l~ 1465 (1866)
...+++..+-...+.+.+....--+.| .+. ++|-. .+-+..
T Consensus 1354 asaILPLiFLa~~ee~Ka~q~Lw~dvW-------------------~e~------------------vsggagtvrl~~~ 1396 (1702)
T KOG0915|consen 1354 ASAILPLIFLAMHEEEKANQELWNDVW-------------------AEL------------------VSGGAGTVRLYLL 1396 (1702)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------HHh------------------CCCCcchhhhhHH
Confidence 999999887766544221111000000 000 11100 011222
Q ss_pred ccHHH-HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 000201 1466 PLLPI-FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544 (1866)
Q Consensus 1466 ~ilp~-l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~ 1544 (1866)
.++-. +.....+..+..|.+++.++..++.......-.|++..+...+...+..+ .|+-+...+.++...+.++...+
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GR-iwdGKe~iLKAl~~~~~a~~~~v 1475 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGR-IWDGKEEILKALASAFEAGLADV 1475 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHHhHHHH
Confidence 33333 33444455689999999999999987754444577888888888888877 67788888888876666554433
Q ss_pred CCchH
Q 000201 1545 KPFLP 1549 (1866)
Q Consensus 1545 ~~~lp 1549 (1866)
..-.|
T Consensus 1476 ~~~~~ 1480 (1702)
T KOG0915|consen 1476 KRNMS 1480 (1702)
T ss_pred HHhch
Confidence 33334
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.2e-20 Score=220.90 Aligned_cols=665 Identities=18% Similarity=0.241 Sum_probs=445.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhccc-chhhhHHHHH-HhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC-CcchHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFE-NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 539 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~-~~~~ll~~le-~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~ 539 (1866)
.+..+..|...+..++.--..+|.. -.+.++|++- ..|+ |.-|+..+..+.+|.-.++.. .|++..|+
T Consensus 373 KNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe---------DqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 373 KNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE---------DQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred cCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc---------chhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 4566677777776666544555554 3456666432 2221 456777888887777555543 35555444
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
..+-..+-+++...+..--+.+..+++..+ +...+..+=..+ .+.+.-+|...+.+++.++..+|... ++||
T Consensus 444 vViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgip~-----llpf 515 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGIPA-----LLPF 515 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCcHH-----HHHH
Confidence 433344445554444444444555555433 111111111111 23456799999999999999988554 5899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 696 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~l 696 (1866)
|.....++++|..|+.++.+...++...|...-||+..++.++-.++.|.+..||..++.++..+++..+++++ ..+
T Consensus 516 Lkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsV 595 (1172)
T KOG0213|consen 516 LKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSV 595 (1172)
T ss_pred HHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999998775 678
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-ch-hH-
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP-EI- 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~-~i- 772 (1866)
+..|.++.....-..=.+-+.++|.++.........++ .+++-.+..-.+.++.+.++...+.+.+++...+ +| ++
T Consensus 596 lkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r 675 (1172)
T KOG0213|consen 596 LKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR 675 (1172)
T ss_pred HHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh
Confidence 88888877544333223333444444333222222222 2455556666777777888888888877775443 22 22
Q ss_pred HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 773 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
.+++|.+...... -|.|++ -++ -+...+.-..+|..++.
T Consensus 676 ~dilp~ff~~fw~----rrmA~d----------------------------rr~---ykqlv~ttv~ia~KvG~------ 714 (1172)
T KOG0213|consen 676 FDILPEFFFSFWG----RRMALD----------------------------RRN---YKQLVDTTVEIAAKVGS------ 714 (1172)
T ss_pred hhhhHHHHhhhhh----hhhhcc----------------------------ccc---hhhHHHHHHHHHHHhCc------
Confidence 3445544433211 000100 000 11122233344444444
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-----hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhC
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 927 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-----~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g 927 (1866)
..++..+..-+.|..+.-|...+.++..+...+|... -+.++..++..++.++.. -.-.+.+++.++.++|
T Consensus 715 --~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~--d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 715 --DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTE--DSVMLLGFGTVVNALG 790 (1172)
T ss_pred --hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccc--hhhhhhhHHHHHHHHh
Confidence 2355555666778888889988988888888877542 234666666666654432 1245678899999998
Q ss_pred hh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch----hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 000201 928 TV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV----QFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 928 ~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~----~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
.. ++..+...++..++++.+.+|..+..+++.++..+.. ..-.|+.. .+..++..++++|--..+.|+..
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv---vLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV---VLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH---HHHHhcCcccHHHHHHHHHHHHH
Confidence 74 7788888888899999999999999999998876643 23344444 47889999999999999999999
Q ss_pred HHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhch
Q 000201 1001 LVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1076 (1866)
Q Consensus 1001 i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~ 1076 (1866)
|++..+-. .+..++|.+.-.+.+...++...++.++|.+...-+ +..+.
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp---------------------------E~v~a 920 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP---------------------------EYVSA 920 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc---------------------------ccCCH
Confidence 98876433 356688888888889999999999999998753211 01111
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1077 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1077 ~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
..+-++.-.|...+...+..+|++|...++.++...+. .+++. .|+..|...+-..|....-+++-+.+.+++.
T Consensus 921 REWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP--qdVLa----tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 921 REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP--QDVLA----TLLNNLKVQERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH--HHHHH----HHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence 22234444444455666788999999999999986553 23344 4444555555555655555555555555542
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
.++|.+..-...++.++..+++.+++-++...+ +.-..|+-.+.|.+..++.|.|+.-|+.|..++..+
T Consensus 995 ---tVLPalmneYrtPe~nVQnGVLkalsf~Feyig-emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 995 ---TVLPALMNEYRTPEANVQNGVLKALSFMFEYIG-EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred ---hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH-HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 456777777777888999999999998887765 456789999999999999999999999888766554
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.2e-20 Score=217.22 Aligned_cols=731 Identities=14% Similarity=0.176 Sum_probs=495.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-HHhHHHHHHhh-cCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v~~llp~L~~~-L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
+...++ ..++..+..|+.+...+..=+..++..- +..++|.+.+. |+ -+.|+--+.+|..+.+...+-...+..
T Consensus 365 i~~llL-kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLe---DqerhllVkvidriLyklDdlvrpYVh 440 (1172)
T KOG0213|consen 365 IMRLLL-KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLE---DQERHLLVKVIDRILYKLDDLVRPYVH 440 (1172)
T ss_pred HHHHHH-hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCcccc---chhhhhHHHHHHHHHHhhcccchhcee
Confidence 344444 4677888899998887776666555443 36677766542 22 356888889999999988777777777
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
+|+-.+-.++-|.+...|......+.++++..+ +..++...-.-+.+.+++||........+ ..++--.+.++
T Consensus 441 kILvViepllided~yar~egreIisnLakaaG---la~mistmrpDidn~deYVRnttarafav----vasalgip~ll 513 (1172)
T KOG0213|consen 441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAG---LATMISTMRPDIDNKDEYVRNTTARAFAV----VASALGIPALL 513 (1172)
T ss_pred eeEEEeecceecchHHHhhchHHHHHHHHHHhh---hHHHHHhhcCCcccccHHHHHHHHHHHHH----HHHHhCcHHHH
Confidence 777666778899999999988888888876543 33344444444455567888422221111 01122356788
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---CC
Q 000201 816 PIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---EN 891 (1866)
Q Consensus 816 p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---~~ 891 (1866)
|.|.....++ +|+-|..+..++..++..++. .+.||+..++..+.+.+.|.+..||..++.+++.+++..++ +.
T Consensus 514 pfLkavc~SkkSwqaRhTgIkivqqIail~Gc--svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~ 591 (1172)
T KOG0213|consen 514 PFLKAVCGSKKSWQARHTGIKIVQQIAILSGC--SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQ 591 (1172)
T ss_pred HHHHHHhccccchhhhchhhHHHHHHHHHhcc--hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHH
Confidence 8888888887 999999999999999998876 67899999999999999999999999999999999998765 47
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
|+.++..|.+.+.+.... .-..-+.++|-++.-...+ +..++|-.+..-..+++.+.+...+..+...+..-|-+
T Consensus 592 fDsVlkpLwkgir~hrgk-~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 592 FDSVLKPLWKGIRQHRGK-ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHHHHHHHccCh-HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC
Confidence 888888898888765543 2334445556666555444 33567777888889999999999999999999888743
Q ss_pred hHhHHHHHHHHHHhhccC-----CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHH
Q 000201 968 FQNYLQQVLPAILDGLAD-----ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1042 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d-----~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~ 1042 (1866)
=.-.-..++|.++..... +-.+-|. ...+-..+.+.++ .+.++..+...+.|++...|.-..+++..++..
T Consensus 671 ~~y~r~dilp~ff~~fw~rrmA~drr~ykq-lv~ttv~ia~KvG---~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~ 746 (1172)
T KOG0213|consen 671 PAYIRFDILPEFFFSFWGRRMALDRRNYKQ-LVDTTVEIAAKVG---SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGR 746 (1172)
T ss_pred HHHHhhhhhHHHHhhhhhhhhhccccchhh-HHHHHHHHHHHhC---chHHHHHHhhhhccccHHHHHHHHHHHHHHHhc
Confidence 211224567777665321 1111111 1111122232222 233445555667788888888888887777655
Q ss_pred hcCCccccc------------ccCCCCCCCcchHHHHHHHHHHhch---hhhHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000201 1043 VAGTSGKAL------------LEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1107 (1866)
Q Consensus 1043 ~~~~~~~~~------------~~~~~ed~~~~~e~~~~~l~~~lg~---~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~ 1107 (1866)
++...-.-+ +.+...++. ..-.....+...+|. .+...+++.+...++..+..||+.|+++++.
T Consensus 747 lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 747 LGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISS 825 (1172)
T ss_pred cccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 543211000 110000000 000112334455553 3566777777788999999999999999998
Q ss_pred HhhcChhhH-HHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHH
Q 000201 1108 IVANTPKTL-KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCI 1182 (1866)
Q Consensus 1108 l~~~~p~~l-~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~ 1182 (1866)
++......- ...+..+-..|...++...+++--..+.++..++...|-. -...++|.+.-.|++....+..+.+.
T Consensus 826 la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~Id 905 (1172)
T KOG0213|consen 826 LAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCID 905 (1172)
T ss_pred HHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHH
Confidence 875332211 1244555556778888889999888888888888877642 12344555555555566666666666
Q ss_pred HHHHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchh-----
Q 000201 1183 GLSEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD----- 1256 (1866)
Q Consensus 1183 ~L~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~----- 1256 (1866)
.++.+.. .+++.+ ...|-.|.=.+...|...+.++|.+|...||.+.+.+|+ .+++..|++.|+..+...
T Consensus 906 Lvg~Iad-rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP---qdVLatLlnnLkvqeRq~RvcTt 981 (1172)
T KOG0213|consen 906 LVGTIAD-RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP---QDVLATLLNNLKVQERQNRVCTT 981 (1172)
T ss_pred HHHHHHh-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH---HHHHHHHHhcchHHHHHhchhhh
Confidence 6666544 344322 223344555566777778889999999999999999999 688999999997654321
Q ss_pred HHHHHHHHHhhccccccchhhhhhhhcCCccc--hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1257 TALDGLKQILSVRTTAVLPHILPKLVHLPLSA--FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1257 ~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~--~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
.++....+.++ .-.++|.|+.....+.... ...++++.+.+..|..-..|.-.+.|.|-+.+.|.|..-|+.+..+
T Consensus 982 vaIaIVaE~c~--pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 982 VAIAIVAETCG--PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred hhhhhhhhhcC--chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 12222222222 2357788877665555433 3467888888888988889999999999999999999999999999
Q ss_pred HhHhhhccc----hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHH
Q 000201 1335 AETVTLVID----EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAA 1410 (1866)
Q Consensus 1335 l~~l~~~~~----~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A 1410 (1866)
+.++...+. .+.+-.+++.+...+-+.+|.+.++...++..+....+. ..++..+.+-|-.+...||+.-
T Consensus 1060 I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~------~~~~~Y~~QGLFHParkVR~~y 1133 (1172)
T KOG0213|consen 1060 IKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP------QAMLKYCLQGLFHPARKVRKRY 1133 (1172)
T ss_pred HHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch------HHHHHHHHHhccCcHHHHHHHH
Confidence 999988653 345777888888888899999999988888877543221 2344444555557888999999
Q ss_pred HHHHHHHHh
Q 000201 1411 WEALSRVVA 1419 (1866)
Q Consensus 1411 ~~aL~~l~~ 1419 (1866)
|..++.+..
T Consensus 1134 w~vyn~my~ 1142 (1172)
T KOG0213|consen 1134 WTVYNSMYH 1142 (1172)
T ss_pred HHHHHhHhh
Confidence 999888754
No 17
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.1e-17 Score=191.71 Aligned_cols=657 Identities=14% Similarity=0.174 Sum_probs=415.9
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH---
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--- 931 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l--- 931 (1866)
++-...+..+.++.|..-..|...++.++.. ++...+++++..+.....++.....++.+...+|.++....++.+
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 3455567778899999999999999999984 444578999998888887776666778888888998888777532
Q ss_pred -HHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhH--hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc
Q 000201 932 -EHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQ--NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 932 -~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~--~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~ 1006 (1866)
..++-.+.....+ ++..+|-.++.++..-.......|. .-.+.+++.....-..++.++..+++-++..++..+.
T Consensus 174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY 253 (858)
T COG5215 174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY 253 (858)
T ss_pred hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3344455544433 4788999888888764443333331 1123355556666667888999999999998887654
Q ss_pred cc---chhc-hHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHH
Q 000201 1007 TT---SLPL-LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1082 (1866)
Q Consensus 1007 ~~---~i~~-llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~v 1082 (1866)
+. .+.. +......++.++|.++...+++....+... +.+. ..-...+.
T Consensus 254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeE-----------------eid~----~~e~~~~p------- 305 (858)
T COG5215 254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEE-----------------EIDG----EMEDKYLP------- 305 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-----------------Hhhh----HHHHhhcc-------
Confidence 32 1111 112223445556666666555555443210 0000 00000010
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhcC---hhhHHHhHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1083 LAALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLA---SSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1083 l~~L~~~~~D~~~~vR~~A~~~l~~l~~~~---p~~l~~~l~~l~~~L~~~l~---~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
.. + +.+. ....++++|.++..+.+.=. +.+|....+|..||.-+.+..|+.
T Consensus 306 ---------e~-p-------------~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 306 ---------EV-P-------------AQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK 362 (858)
T ss_pred ---------cC-c-------------hhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence 00 0 0011 12245677888887765332 356788999999999999999999
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
++..++..+.+.++.++|..|..+..+++.++..-....+.+++++.+|.+...+.|+.--|++.++.||+.+..++...
T Consensus 363 i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 363 IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999998766667788999999999999999999999999999999998764331
Q ss_pred hHhhH--HHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccc-hhHHHHHHHHH----Hh---CCCch
Q 000201 1237 AIDEI--VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSA-FNAHALGALAE----VA---GPGLN 1306 (1866)
Q Consensus 1237 ~~~~i--lp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~-~~~~al~~La~----~~---g~~l~ 1306 (1866)
+++- ++... ..++.++. +.|..+ ....++..++. .. .+-+.
T Consensus 443 -i~p~~Hl~~~v---------sa~liGl~-------------------D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~ 493 (858)
T COG5215 443 -ISPCGHLVLEV---------SASLIGLM-------------------DCPFRSINCSWRKENLVDHIAKAVREVESFLA 493 (858)
T ss_pred -cCccccccHHH---------HHHHhhhh-------------------ccchHHhhhHHHHHhHHHhhhhhhccccchhH
Confidence 1110 00000 01111111 111110 01111222221 11 12244
Q ss_pred hhHhhHHHHHHHhc--CCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchh
Q 000201 1307 FHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYL 1384 (1866)
Q Consensus 1307 ~~l~~il~~L~~~l--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~ 1384 (1866)
+++..|+..|+..- ..++...|.++.++++.++ ...+..+
T Consensus 494 ~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli--------------------------------------~~~~d~V 535 (858)
T COG5215 494 KFYLAILNALVKGTELALNESNLRVSLFSALGTLI--------------------------------------LICPDAV 535 (858)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH--------------------------------------hhcchhH
Confidence 55555555554432 2233344444444444444 3333222
Q ss_pred hhhHHHH-----------HHHHHHHhCCCC----hhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhc
Q 000201 1385 VDEAPNM-----------ISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKK 1449 (1866)
Q Consensus 1385 ~~~~~~i-----------l~~L~~ll~d~~----~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~ 1449 (1866)
.+....+ ++.+-..+.-.| .++..+-+..|..++.+.+.+.
T Consensus 536 ~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~i------------------------ 591 (858)
T COG5215 536 SDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDI------------------------ 591 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc------------------------
Confidence 2222111 111111111111 1233333333333333332211
Q ss_pred CCccccCCcCCCCCccccHHHHHHhhccC-CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHH
Q 000201 1450 GGPILIPGFCLPKALQPLLPIFLQGLISG-SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSA 1528 (1866)
Q Consensus 1450 ~~~~~l~g~~~~~~l~~ilp~l~~~L~~~-~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~ 1528 (1866)
...-..++..|++.+.+. ..........+|+.+.... ++.+..|++.+.|-|.+.+.. .+..+...
T Consensus 592 -----------e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl-~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~ 658 (858)
T COG5215 592 -----------EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL-EERFEQYASKFIPYLTRALNC-TDRFVLNS 658 (858)
T ss_pred -----------ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhcc-hhHHHHHH
Confidence 011123666777776665 3345566788899988887 788999999999999999965 47789999
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH-HhccCChhhHHHHHHHHhcc-----CC-
Q 000201 1529 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQV-----SD- 1599 (1866)
Q Consensus 1529 al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~L~~~l~~-----~~- 1599 (1866)
+...+|.|...++..+.+|...+...++++++++ +++++-....++|.+ ..++..+.+|+..++-.++. +.
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~ 738 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHS 738 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999998 789999999999999 56788899999887766543 11
Q ss_pred ---------hhHHHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhcChhHHHH
Q 000201 1600 ---------AGIREAILTALKGVLKHAGKS--VSSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCMEDGQLAD 1666 (1866)
Q Consensus 1600 ---------~~vr~~~l~aL~~vi~~~~~~--l~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~l~~L~~~~~~~~~~~ 1666 (1866)
..++.....|+..+....... ...||...|+..+-....|++ +..-+++.+++|.++..+|..++..
T Consensus 739 ~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~ 818 (858)
T COG5215 739 DEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKF 818 (858)
T ss_pred CceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhh
Confidence 234455555555555544422 334788888888776555553 4444678899999999999866544
Q ss_pred H
Q 000201 1667 L 1667 (1866)
Q Consensus 1667 ~ 1667 (1866)
.
T Consensus 819 ~ 819 (858)
T COG5215 819 G 819 (858)
T ss_pred c
Confidence 3
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.9e-21 Score=225.34 Aligned_cols=520 Identities=22% Similarity=0.307 Sum_probs=376.2
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHH
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 820 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~ 820 (1866)
+...-.|.++.||..-..+...+...-+++.+..+.|..-+.++..
T Consensus 22 ~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~---------------------------------- 67 (569)
T KOG1242|consen 22 LVSAGEDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL---------------------------------- 67 (569)
T ss_pred ecccCCCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc----------------------------------
Confidence 3333378888888877777666554444444444555444443321
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
.+..+|....-..+.++..+.. .+ +-...++..+...+..|.+.+|.+...|+..+........-..+.+.+.
T Consensus 68 ----~~~~~~~~~~v~~~~~a~~~~~-~d--~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~ 140 (569)
T KOG1242|consen 68 ----HNDNLRNNVVVLEGTLAFHLQI-VD--PRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLL 140 (569)
T ss_pred ----hhHHHhhhhHHHHHHHHHhccc-cC--cchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHH
Confidence 1223444444444444443321 22 2233577788888889999999999999999988766554445555555
Q ss_pred HhcccCCCHHHHHHHHHHHHHHHHHhChhHHH--HHHHHHHHHhccC-ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYFE--HILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~--~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
+.+. ......|.+++.+++.+..+.|.+.+. .++..+.....+. ....|++++.++......+|..|+||+-.++|
T Consensus 141 ~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp 219 (569)
T KOG1242|consen 141 ELLT-STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILP 219 (569)
T ss_pred HHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence 5555 344568999999999999988877553 4666777777766 45566688999999999999999999999999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q 000201 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1057 (1866)
Q Consensus 978 ~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~e 1057 (1866)
.++....|..+.||.++..+...++..++..+++.++|.+...+.+..||.+.++++++|.+.+..+.
T Consensus 220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~------------ 287 (569)
T KOG1242|consen 220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK------------ 287 (569)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH------------
Confidence 99999999999999999999999999999999999999999988888999999999999988654321
Q ss_pred CCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHH
Q 000201 1058 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1137 (1866)
Q Consensus 1058 d~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~ 1137 (1866)
.+. ....++++.+...++|+..+||+++..++..+.+.... +-+..+++.++.++++++..
T Consensus 288 -----------qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 288 -----------QLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred -----------HHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhcCcccc
Confidence 011 23446777788889999999999999999888763221 12445556666777877643
Q ss_pred HHHHHHHHHH--HHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh-chhhHHhhHhhHHHHHHHhhcCC
Q 000201 1138 RRQVAGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDS 1214 (1866)
Q Consensus 1138 ~R~~A~~~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~d~ 1214 (1866)
+.. +...|+ .++..+.++.+.-++|++.+++.+.+...+..++..++.+.... .+..+.+|++.++|.+...+.|.
T Consensus 349 ~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 349 TPE-CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred hHH-HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC
Confidence 332 333332 34555556678889999999999999999999998888877666 57788999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCc---hhHHHHHHHHHhhccccccchhhhhhhhcC----Cc-
Q 000201 1215 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQT---SDTALDGLKQILSVRTTAVLPHILPKLVHL----PL- 1286 (1866)
Q Consensus 1215 ~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~---~~~al~~l~~il~~~~~~ilp~Lip~L~~~----~~- 1286 (1866)
.|+||..++++++.+.+..|...+++.+|.+.+.+.++.. ...+.+.+.++++.........++|.+... ..
T Consensus 428 ~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~ 507 (569)
T KOG1242|consen 428 VPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLID 507 (569)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccch
Confidence 9999999999999999999999889999999999866543 346677777777654333333333332211 11
Q ss_pred ---cchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHH
Q 000201 1287 ---SAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEA 1334 (1866)
Q Consensus 1287 ---~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~ 1334 (1866)
.......+..+....|..+.+|+..+++.+.+.+.+.++..+..+.+.
T Consensus 508 ~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 508 ERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred hhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 111122333444456777889999999999988887777766555443
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=3.9e-19 Score=204.50 Aligned_cols=664 Identities=17% Similarity=0.181 Sum_probs=413.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhccc-chhhhHHH-HHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC-CcchHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPI-FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVV 539 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~-~~~~ll~~-le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~ 539 (1866)
.+.++..|.+.+...+.---++|.. ..+.++|+ ++..|+ |.-|+..+..+.++.-.++.. .|++..++
T Consensus 178 KNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le---------Dqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 178 KNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE---------DQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred ccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh---------hhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 4555666666666555433445544 44677775 344433 445778888887777555542 34554444
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
...-..+-+++...+..--+.+..+++..+=. -.+..+=.. .++++.-+|...+.+.+.++..+|.+ .+.|+
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpD-i~~~deYVRnvt~ra~~vva~algv~-----~llpf 320 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPD-ITSKDEYVRNVTGRAVGVVADALGVE-----ELLPF 320 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCC-cccccHHHHHHHHHHHHHHHHhhCcH-----HHHHH
Confidence 43344445566555555555555555544310 001000011 13456679999999999999988743 56899
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLV 696 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~l 696 (1866)
|..+..+.++|..|..++.+...+++.+|...-+|+..++.++-.++.|....||-.++.++..+++...++++ ..+
T Consensus 321 l~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~v 400 (975)
T COG5181 321 LEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEV 400 (975)
T ss_pred HHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999999999988775 455
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhh-ChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~-~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
+..|.++.....-..=.+-+.+.|.+... .|+.....- .+.
T Consensus 401 l~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~t--------------------------------------re~ 442 (975)
T COG5181 401 LCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDT--------------------------------------REH 442 (975)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhH--------------------------------------HHH
Confidence 66565554322111111111111111100 001111111 222
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHh-ccccccCCc-chhhhHHHHHHHhhcCC-CHHHH---HHHHHHHHHHhhhcCCCcc
Q 000201 776 VPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDA-PSLALLVPIVHRGLRER-SAETK---KKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~al~~L~~-~~~~~~~~~-~~l~~l~p~L~~~l~d~-~~~vr---~~a~~~l~~l~~~l~~~~~ 849 (1866)
...+...+..|++.....+..... ...+..++. .....+.|.+...+-.+ +...| +.....-.-+++..++
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~--- 519 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD--- 519 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC---
Confidence 333333334443332211111111 111111111 12234555554322100 00000 0001111223333333
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-----~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
+.+...+.+.+.|+...-|..++.+...+...+|..-| +.++..++..++.+... -.-.+.+++.+..
T Consensus 520 -----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t--~~~il~~f~tv~v 592 (975)
T COG5181 520 -----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT--VGLILPCFSTVLV 592 (975)
T ss_pred -----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc--ccEEEecccceee
Confidence 34667778888898888899888888888887775422 33555555555543321 1122334444444
Q ss_pred Hh---ChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch--hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 000201 925 AL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 925 ~~---g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~--~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
++ |..++..++..++..++++.|.+|+.+..+.+.++..+.. ++ ..+..+=..+...+..++++|--..+.|+.
T Consensus 593 sl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 593 SLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred ehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 33 3447788889999999999999999999999988876541 11 233334444788999999999988999998
Q ss_pred HHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhc
Q 000201 1000 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1075 (1866)
Q Consensus 1000 ~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg 1075 (1866)
.|.....-. .+..++|.+.-.+.++..++....+.++|.+...-+ +..|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~p---------------------------eyi~ 724 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSP---------------------------EYIG 724 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCc---------------------------ccCC
Confidence 887765444 355688888888888888998888988888753211 1112
Q ss_pred hhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1076 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1076 ~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
...+-++.-.|...+...+.++|+.|...++.++...+. +++ +..++..|...+-..|....-+++-+.+.+|+
T Consensus 725 ~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdv----L~~LlnnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 725 VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDV----LDILLNNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHH----HHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 222334444455556677889999999999999876553 233 44455556655566676666666666666665
Q ss_pred ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1156 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1156 ~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
. .++|.+..-...++.++..+++.+++-++...+ .....|+-.+.|.+..++.|.|+.-|+.|...+..+
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 3 456677776778889999999999998887765 455679999999999999999999998877655443
No 20
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=3.8e-17 Score=188.39 Aligned_cols=720 Identities=15% Similarity=0.159 Sum_probs=457.0
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhh-cCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHh
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 742 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~-L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~ 742 (1866)
..++.....|..+...+..=+.+.++..+ ..++|.+++. |+| +.|+-.+.++..+.++..+-...+..+|+-.+.
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD---qerhl~vk~idr~Ly~lddl~~pyvhkILvVv~ 252 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED---QERHLVVKLIDRLLYGLDDLKVPYVHKILVVVG 252 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh---hhhHhHHHHHHHHHHhcccccccceeeEEEEee
Confidence 46777888888888877776666666554 7788877654 333 567888888999998877666666666666666
Q ss_pred hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 743 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 743 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
.++-|+++.+|.....-+..++...+=. ..+...-.-+.+.++++|........+ ..++--...++|.+....
T Consensus 253 pllided~~~r~~g~eii~nL~~~~Gl~---~~vs~mrpDi~~~deYVRnvt~ra~~v----va~algv~~llpfl~a~c 325 (975)
T COG5181 253 PLLIDEDLKRRCMGREIILNLVYRCGLG---FSVSSMRPDITSKDEYVRNVTGRAVGV----VADALGVEELLPFLEALC 325 (975)
T ss_pred ccccCccHHHhcccHHHHHHHHHHhccc---eeeeeccCCcccccHHHHHHHHHHHHH----HHHhhCcHHHHHHHHHHh
Confidence 7888999999988877776666544311 111112122334456777422221110 011223567889998888
Q ss_pred cCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---CChhhHHHH
Q 000201 823 RER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSW 898 (1866)
Q Consensus 823 ~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---~~~~~l~~~ 898 (1866)
.++ +|+-|.....+...+|..++. ...+|+..++..+.+++.|.+..||..++.+++.+++..|+ +.|+.++..
T Consensus 326 ~SrkSw~aRhTgiri~qqI~~llG~--s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~p 403 (975)
T COG5181 326 GSRKSWEARHTGIRIAQQICELLGR--SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCP 403 (975)
T ss_pred cCccchhhhchhhHHHHHHHHHhCc--cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHH
Confidence 887 999999999999999998876 56789999999999999999999999999999999998775 467888888
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH----HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch-hhHhHHH
Q 000201 899 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQ 973 (1866)
Q Consensus 899 L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l----~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~-~f~~~l~ 973 (1866)
|.+...+.... .-..-..+.|-++.-..++|. .+.+..+...+++++.+.+...+. +...|...|. .-..|..
T Consensus 404 Lw~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~-v~~~C~~v~~~tp~~lr~ 481 (975)
T COG5181 404 LWEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLV-VERICDKVGTDTPWKLRD 481 (975)
T ss_pred HHHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHH-HHHHHhccCCCCHHHHHH
Confidence 88777654432 222333444555554555533 567777788888887777765443 3344444332 2122445
Q ss_pred HHHHHHHhhcc------CC--ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcC
Q 000201 974 QVLPAILDGLA------DE--NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1045 (1866)
Q Consensus 974 ~il~~ll~~l~------d~--~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~ 1045 (1866)
++.|.++...- |. +..|- .+-..+.+..+. ..+...+.+...|+....|.-...+...++..++.
T Consensus 482 ~v~pefF~~fw~rr~A~dr~~~k~v~----~ttvilAk~~g~---~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~ 554 (975)
T COG5181 482 QVSPEFFSPFWRRRSAGDRRSYKQVV----LTTVILAKMGGD---PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGR 554 (975)
T ss_pred hhcHHhhchHHHhhhcccccccceee----hhHHHHHHHcCC---hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhccc
Confidence 55555544321 10 00010 111111111111 11222333344455555555444444444433321
Q ss_pred Ccccc------------cccCCCCCCCcchHHHHH--HHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh-
Q 000201 1046 TSGKA------------LLEGGSDDEGASTEAHGR--AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA- 1110 (1866)
Q Consensus 1046 ~~~~~------------~~~~~~ed~~~~~e~~~~--~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~- 1110 (1866)
..-.- .+.+.+..+..-..-.+. .-.+..|..+...+++.+...++...+.||+.|+++.+.++.
T Consensus 555 ~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~v 634 (975)
T COG5181 555 LGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKV 634 (975)
T ss_pred ccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 10000 000000000000000000 002334455667788888888899999999999999988774
Q ss_pred --cChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHHhcccCCCCccchhhHHHHH
Q 000201 1111 --NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLKDPSASRRQGVCIGL 1184 (1866)
Q Consensus 1111 --~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L~~~L~d~~~~vr~~a~~~L 1184 (1866)
+++.+ ..+..+-..+...++...+++--..+.++..+....+-. -...++|.+...|++....+..+.+..+
T Consensus 635 lk~c~e~--~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lv 712 (975)
T COG5181 635 LKACGET--KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALV 712 (975)
T ss_pred HHhcchH--HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHH
Confidence 44432 345555566778888888888777777777776554422 1233444444445555666666666666
Q ss_pred HHHHHhhchhhH-HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchh-----HH
Q 000201 1185 SEVMASAGKSQL-LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD-----TA 1258 (1866)
Q Consensus 1185 ~~li~~~~~~~l-~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~-----~a 1258 (1866)
+.+... +++.. ...|-.|.=.+...|...+.++|.+|...||.+.+.+|+ .+++..|++.|+..+... .+
T Consensus 713 g~I~~~-~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP---qdvL~~LlnnLkvqeRq~Rvctsva 788 (975)
T COG5181 713 GTICMN-SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP---QDVLDILLNNLKVQERQQRVCTSVA 788 (975)
T ss_pred HHHHhc-CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH---HHHHHHHHhcchHHHHHhhhhhhhh
Confidence 665443 33322 223344555566777788899999999999999999999 688889999997654321 22
Q ss_pred HHHHHHHhhccccccchhhhhhhhcCCccc--hhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHh
Q 000201 1259 LDGLKQILSVRTTAVLPHILPKLVHLPLSA--FNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAE 1336 (1866)
Q Consensus 1259 l~~l~~il~~~~~~ilp~Lip~L~~~~~~~--~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~ 1336 (1866)
+....+.++ .-.++|.++.....+.... ...+|+..+.+..|.+-..|.-.+.|.+-+.+.|.++.-|+.+...+.
T Consensus 789 I~iVae~cg--pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~ 866 (975)
T COG5181 789 ISIVAEYCG--PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIR 866 (975)
T ss_pred hhhhHhhcC--chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHH
Confidence 222333332 2356777776655554332 346688888888899888999999999999999999999999999999
Q ss_pred Hhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHH
Q 000201 1337 TVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWE 1412 (1866)
Q Consensus 1337 ~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~ 1412 (1866)
+++.++.. +..-.+++.|...+-+++|.+.++...++..|....+. ..++..+.+-+-.+...||..-|.
T Consensus 867 Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~------g~~m~Yv~qGLFHPs~~VRk~ywt 940 (975)
T COG5181 867 HLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS------GAMMKYVQQGLFHPSSTVRKRYWT 940 (975)
T ss_pred HHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc------HHHHHHHHHhccCchHHHHHHHHH
Confidence 99987643 44667788888888899999999999998888654332 223333444455788899999998
Q ss_pred HHHHHHh
Q 000201 1413 ALSRVVA 1419 (1866)
Q Consensus 1413 aL~~l~~ 1419 (1866)
.++.+-.
T Consensus 941 vyn~myv 947 (975)
T COG5181 941 VYNIMYV 947 (975)
T ss_pred HHhhhhh
Confidence 8877643
No 21
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.87 E-value=3.8e-19 Score=223.46 Aligned_cols=529 Identities=21% Similarity=0.262 Sum_probs=400.5
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHH-HHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhc
Q 000201 451 PVIMTFLISRALADTNADVRGRMLNA-GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA 529 (1866)
Q Consensus 451 ~~~~~fli~~~l~d~~~~vr~~~~~a-~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~ 529 (1866)
..+++|+- ... +.+.+|+..+..- +......+|+++...+++.+|... ..++ ..+|+++++.+..++..+.
T Consensus 120 ~~lipf~~-e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~----~~ee--t~vr~k~ve~l~~v~~~~~ 191 (759)
T KOG0211|consen 120 LELIPFLT-EAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLA----TVEE--TGVREKAVESLLKVAVGLP 191 (759)
T ss_pred hhhhhHHH-Hhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhh----HHHH--HHHHHHHHHHHHHHHHhcC
Confidence 45677774 344 8888888877554 555666888899999999999994 3343 6799999999999997766
Q ss_pred cCCcchHHHHHHHHHhcCCCcHHHHHHHHhhh-hhhhH-hhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhh
Q 000201 530 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL-SPLMQ-SMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF 606 (1866)
Q Consensus 530 ~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l-~~lv~-~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~ 606 (1866)
+.. ....+..++..+... +++++....|- ....+ ... +..+..+..++..+.+++.+.+|+.++..++.+++.+
T Consensus 192 ~~~--~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 192 KEK--LREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred hHH--HHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 644 345666666666665 58888777762 22222 222 4467788889999999999999999999999888866
Q ss_pred CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000201 607 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 686 (1866)
Q Consensus 607 g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~ 686 (1866)
+.... ...++|.+.....|....||.+|.+++..+..
T Consensus 269 ~~~~~-------------------------------------------~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 269 ESEIV-------------------------------------------KSEVLPTLIQLLRDDQDSVREAAVESLVSLLD 305 (759)
T ss_pred HHHHH-------------------------------------------HhhccHHHhhhhhcchhhHHHHHHHHHHHHHH
Confidence 32111 12455666667778889999999999999988
Q ss_pred hhcHh-hH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 687 QLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 687 ~l~~~-~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
.+... .+ +.+.+.+++..++.+|++|.........+....+.+. .-+..++.....++|...++|.+...-...+.
T Consensus 306 l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~--~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~ 383 (759)
T KOG0211|consen 306 LLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA--TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLA 383 (759)
T ss_pred hcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc--CcccchhhHHHHhcchhhhhhHHhhcchHHHh
Confidence 87765 44 7899999999999999999998888777776655532 23467888899999999999999999988888
Q ss_pred hhccc---hhH--HhHHHHHHHhhCCCChhHHHHHHHHHh-ccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 765 SVIKN---PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 838 (1866)
Q Consensus 765 ~~i~~---~~i--~~lv~~L~~~l~d~~~~vr~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~ 838 (1866)
...+. +.+ +.++|.+.....|.+.++|.+...... ....-. .......+.|.+...+++..+.||....+.+.
T Consensus 384 ~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 384 CYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred hhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHH
Confidence 77763 222 567899999999999999965543322 111111 23456778899999999999999999777665
Q ss_pred HHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHH
Q 000201 839 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 918 (1866)
Q Consensus 839 ~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~ 918 (1866)
.+-. +.+...+..+.+..+|.+..+..|..|++|......+..++...|..++.+....+...--.+..+.+|.+++..
T Consensus 463 ~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 463 LLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARN 541 (759)
T ss_pred HHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4443 345456677888999999999999999999999999999999988665554333333332233445689999999
Q ss_pred HHHHHHHhChh-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHH
Q 000201 919 LSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGA 997 (1866)
Q Consensus 919 L~~l~~~~g~~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~a 997 (1866)
+..++..+|.+ ....++|.++....++++.+|.+.+.++..++..+|.++ +...++|.+.....|+.++||..+++.
T Consensus 542 l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 542 LPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred hHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 99999999955 447788888888888899999999999999999999987 788999999999999999999999999
Q ss_pred HHHHHHhhcccchhc-hHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 998 GHVLVEHYATTSLPL-LLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 998 l~~i~~~~~~~~i~~-llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+..++..+.....+. ++|.++....|++-.+|..+....+.+
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 999998877665544 667666665565444455555555443
No 22
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.84 E-value=7.5e-18 Score=211.91 Aligned_cols=558 Identities=21% Similarity=0.255 Sum_probs=396.8
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 665 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~ 665 (1866)
.++.+.|..+..-+..+....|.... ...++|++.+.. ++. ..+...+..-|+.+...-|. ..|...++|.+...
T Consensus 93 ~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~-dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 93 NTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDE-DEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELL 167 (759)
T ss_pred chhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cch-hHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhh
Confidence 44556777777777777777776655 467999999988 433 34555555545555443331 23445677888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh-HHHHHHHHHHHHhhChh-hHHhhhcchhHHHhh
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTE 743 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~-r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~ 743 (1866)
..+....||+.+.+.+..++..++.......+-.++..+...+|+. |..++.+++..+-..++ .+.. ++.|...+
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~ 244 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQS 244 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHh
Confidence 8899999999999999999999988777444444555555558866 55577787777776663 3333 56667788
Q ss_pred hccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 744 VLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 744 ~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
+++|..+.||.+++.-++.+++.+.+... ..++|.+... .
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~ 285 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------L 285 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------h
Confidence 99999999999999999999987765322 3344444444 4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHH
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLD 901 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~ 901 (1866)
.|....||..|...+.++...+.+.. +....+.+.+.+...|++|.+|.........+...+|++ ..+...+....
T Consensus 286 ~DdqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 362 (759)
T KOG0211|consen 286 RDDQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSN 362 (759)
T ss_pred hcchhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHH
Confidence 44445666666666666666554421 344567788888888999999998888888888888875 33445666666
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHH
Q 000201 902 ALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 976 (1866)
Q Consensus 902 ~L~~~~~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il 976 (1866)
.++... ...|...+.-...+...+..+ ..+.++|.+.....+.+.++|.........+...+|. ..-++.+.
T Consensus 363 l~~~~~-~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~ll 439 (759)
T KOG0211|consen 363 LLKDEE-WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELL 439 (759)
T ss_pred Hhcchh-hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccC
Confidence 665433 446666666666666655522 3356678888888899999998877777777767763 34566778
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccc
Q 000201 977 PAILDGLADENESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1052 (1866)
Q Consensus 977 ~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~ 1052 (1866)
|.....++|+.+.||.+..+.+.......... ..+.++|.+.....|.+||+|.+.++.+..++.+
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q---------- 509 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ---------- 509 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh----------
Confidence 88898999999999998876554433322222 2344788888888888999999999988876532
Q ss_pred cCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHHH
Q 000201 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1053 ~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~-~~D~~~~vR~~A~~~l~~l~~~~p--~~l~~~l~~l~~~L~~ 1129 (1866)
+|.+++++.+..++.. +.|....+|.+|...+..++..++ +... .+++.++.
T Consensus 510 ---------------------~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~----~~i~k~L~ 564 (759)
T KOG0211|consen 510 ---------------------LGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARL----EEIPKLLA 564 (759)
T ss_pred ---------------------hhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHH----HhhHHHHH
Confidence 2334444445555543 577788999999999999998776 3333 33444444
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcccc-ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~~~-l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
...++++..|.+.+.++..++..+|..+ ..+++|.+.....|+.+++|.+++..|..++......... ..+.|.+.
T Consensus 565 ~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~ 641 (759)
T KOG0211|consen 565 MDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLE 641 (759)
T ss_pred HhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHH
Confidence 4566689999999999999999998874 5788999999999999999999999999887666543333 45666666
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1209 TALCDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1209 ~~L~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
....|++.+||..|..+++.+....-
T Consensus 642 ~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 642 TLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred HhccCcccchhHHHHHHHHHHHHHHH
Confidence 67779999999999999888755433
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.1e-13 Score=160.20 Aligned_cols=463 Identities=17% Similarity=0.197 Sum_probs=337.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhccc----cccchHHHH-hcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHh
Q 000201 1127 LISSLASSSSERRQVAGRALGELVRKLGER----VLPSIIPIL-SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1201 (1866)
Q Consensus 1127 L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~----~l~~llp~L-~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~ 1201 (1866)
+.+.++++-++.|.+|+.-+-.+++.+-.. ....++..+ .+...+++.+.|.|.+.+++......|.+... |+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~ 83 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLE 83 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHH
Confidence 456677888899999999998888866432 234445433 34455677788889999999887777776665 999
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhh
Q 000201 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKL 1281 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L 1281 (1866)
.+++.+..++.|++..||..|++.+-.+++
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK-------------------------------------------------- 113 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAK-------------------------------------------------- 113 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999998877654443
Q ss_pred hcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhcc----c-hhcHHHHHHHHHh
Q 000201 1282 VHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI----D-EEGVESLVSELLK 1356 (1866)
Q Consensus 1282 ~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~----~-~~~~~~ll~~L~~ 1356 (1866)
++..++..|++.|...+.+...|.+..+|..+ +.++.++..+ . .-.++.++|.|-+
T Consensus 114 ------------------v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~e 174 (675)
T KOG0212|consen 114 ------------------VAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRE 174 (675)
T ss_pred ------------------HhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHH
Confidence 22233445666677777777777777776544 3344444322 1 2248999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHH
Q 000201 1357 GVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDA 1436 (1866)
Q Consensus 1357 ~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~ 1436 (1866)
.+...++..|+..+.++..+-...+.++-.|.+.+++.|+..+.|+..+||..+-.+++.+++....+-
T Consensus 175 riy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P----------- 243 (675)
T KOG0212|consen 175 RIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP----------- 243 (675)
T ss_pred HHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-----------
Confidence 999999999999999999999889999999999999999999999999999988888888765432110
Q ss_pred HhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHH
Q 000201 1437 ISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRI 1516 (1866)
Q Consensus 1437 l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~ 1516 (1866)
+ ++ ......+++...+.++.+..+..|..-|.+++.-. +..+-+|...++..++..
T Consensus 244 -----~--------------s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 244 -----S--------------SM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPC 299 (675)
T ss_pred -----c--------------cc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccC
Confidence 0 00 12234566666778888999999999999998765 778889999998888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCCC-C--CchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-----CChhhHH
Q 000201 1517 IGDRFPWQVKSAILSTLSIIIRKGGIAL-K--PFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALS-----TRVDPLV 1588 (1866)
Q Consensus 1517 l~~~~~~~vr~~al~~L~~L~~~~~~~~-~--~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~-----~~~~~~l 1588 (1866)
+.+.....++..+...-+.+...++... + --+..++..+.+.+.+..++.|.++..|+-.+-.-. -+.++++
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 8876444566555555444444332211 1 112478888999999999999999999998884432 3468999
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHH
Q 000201 1589 GDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL 1668 (1866)
Q Consensus 1589 ~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l 1668 (1866)
+.|+..+.+++.++....+..+..+....... .+++-+.+ |.+.+..+.--.+..+.-++..+|..+.++.+-..+
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~---~~~~fl~s-LL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNSP---NLRKFLLS-LLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCcccc---cHHHHHHH-HHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999998888765442 33333333 344444444455666778888899998888777777
Q ss_pred HHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1669 QELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1669 ~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
..++...++.++ -...+.+|+.++-.+|+-
T Consensus 456 a~ILe~e~nl~F--AstMV~~Ln~iLlTStEL 485 (675)
T KOG0212|consen 456 ADILEREENLKF--ASTMVQALNTILLTSTEL 485 (675)
T ss_pred HHHHhccccchH--HHHHHHHHHhhhcccHHH
Confidence 777766444333 234566888887777753
No 24
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.7e-09 Score=135.61 Aligned_cols=791 Identities=17% Similarity=0.176 Sum_probs=428.6
Q ss_pred HHHHHHhhhhccC--CcchHHHHHHHHHhcC--CCcHHHHHHHHhhhhhhhHhhhhh------hHHHHHHHHHHHHcCCC
Q 000201 519 IFTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE------APTLVSRLLDQLMKSDK 588 (1866)
Q Consensus 519 ~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~--~~~~~v~~~~~~~l~~lv~~~~~~------~~~~l~~ll~~L~~~~~ 588 (1866)
.+|.-+..+.+.. ..++..+...+...+. +.+..|...+..||..+.....-. ....+..++.-. -++.
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~-~h~~ 151 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA-AHKK 151 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH-hcCc
Confidence 3444444444331 1223444444444443 566789999999998888764411 233333333333 3566
Q ss_pred hhHHHHHHHHHHHHHhhhC--cchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH
Q 000201 589 YGERRGAAFGLAGVVKGFG--ISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g--~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~ 664 (1866)
+.+|+.|..++..++.+.. +.... ...+..+..+.+++...+..-...+..+..|-..+...-.+.+..+...++.
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 7899999999999998542 11111 0123344455555444333333344444333334444446778889999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhh----HHhHHHHHHhhcCCC-ChhhHHHHHHHH----HHHHhhChhhHHhhhc
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRTKQSSVQLL----GAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~----v~~llp~L~~~L~~~-~w~~r~~a~~~L----~~l~~~~~~~~~~~l~ 735 (1866)
.++..+..|+-.+.+++..+++..++.. ...++..+.+.--+. +...-.+-+.++ ..++...++.....+|
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 9999999999999999999998766522 133444444433222 111111111111 1222333444455677
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+++.++.++...++++-.++-+++..+.+.... +.+.++..
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~--------------------------------- 353 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-----VIDALCSK--------------------------------- 353 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHH---------------------------------
Confidence 8888888888888888888888888887653211 11111111
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhH
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l 895 (1866)
.+..++.-+...+-+.+.+++..+++.++. ...|++-..+..+...-.+++..-+...-.++|+.+.++|++.+-.+
T Consensus 354 -~~~~~l~~kf~~~~~~ilqi~s~~fek~G~--~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~ 430 (1176)
T KOG1248|consen 354 -QLHSLLDYKFHAVWRFILQILSALFEKCGE--LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTI 430 (1176)
T ss_pred -HHHHHHcchHHHHHHHHHHHHHHHHHHhhh--hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHH
Confidence 122333344455666777788888876665 34566666666666655566666777888999999999999876666
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHHh------ccC--Ch-hHHhHHHHHHHHhhhhh-
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRNC------SHQ--RA-SVRDGYLTLFKYLPRSL- 964 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-~~ll~~l~~~l------~~~--~~-~vR~~al~~l~~L~~~~- 964 (1866)
+|.=+ ..+.....|...+-.|.+-+.+-.-.++ +.++|...+.- ... .. .++.-..++|+-|+..|
T Consensus 431 lpLnl---~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~ 507 (1176)
T KOG1248|consen 431 LPLNL---HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCN 507 (1176)
T ss_pred cchhc---cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhC
Confidence 66433 2222222454444444443333333333 44555444321 111 12 44555677888888776
Q ss_pred -chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 965 -GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 965 -g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
|.+.+.-+..+.|.+...+... ++.|...+.++..+++.-.+. .+
T Consensus 508 ~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~-------------~~-------------------- 553 (1176)
T KOG1248|consen 508 YPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPS-------------SD-------------------- 553 (1176)
T ss_pred CCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCc-------------ch--------------------
Confidence 3455555666777777666543 478887777777766532100 00
Q ss_pred cCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHH
Q 000201 1044 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1123 (1866)
Q Consensus 1044 ~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l 1123 (1866)
..+ . .+.++ .+-...++.+|..-......-| ..+...-+.+
T Consensus 554 -------------------a~e-~---~e~~s-~~AknfL~~lfn~ytq~~~~~~---------------~~l~~~~~~L 594 (1176)
T KOG1248|consen 554 -------------------AAE-N---KEVLS-NDAKNFLPRLFNVYTQTVAAGR---------------KILASRSTVL 594 (1176)
T ss_pred -------------------HHH-H---HHHHh-hhhhHHHHHHHHHhcCCCcccc---------------ccHHHHHHHH
Confidence 000 0 00000 0111233333322111100000 0000111111
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhH
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDEL 1203 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~l 1203 (1866)
.......+.....++-..-...+++++ .+.+..++..-...+-.++....+..-...+..+
T Consensus 595 ~~i~~~~~~~t~~dv~~~l~~s~~e~a-------------------s~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l 655 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDVVGSLKDSAGELA-------------------SDLDESVASFKTLSLLDLLIALAPVQTESQVSKL 655 (1176)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhHh-------------------ccchhhhhhHHHHHHHHHHHhhhccccchhHHHH
Confidence 111111111111111111111111111 1111111111111111111122222222233333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHH-hch----hhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhh
Q 000201 1204 IPTIRTALCDSILEVRESAGLAFSTLFKS-AGM----QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 1278 (1866)
Q Consensus 1204 l~~l~~~L~d~~~~vr~~A~~al~~l~~~-~g~----~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Li 1278 (1866)
....-...+..+..++..+.+.++.+... -|. ..++++...|.+.+++.
T Consensus 656 ~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-------------------------- 709 (1176)
T KOG1248|consen 656 FTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-------------------------- 709 (1176)
T ss_pred HHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 32222233444677888887777777654 111 11222222222221111
Q ss_pred hhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhh--hcc---c-h---hcHHH
Q 000201 1279 PKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVT--LVI---D-E---EGVES 1349 (1866)
Q Consensus 1279 p~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~--~~~---~-~---~~~~~ 1349 (1866)
..+....+..++..|.+..+.......+..+|.++-.+++.+...|..+..++-.|. ... + + ..+++
T Consensus 710 ----~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne 785 (1176)
T KOG1248|consen 710 ----SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE 785 (1176)
T ss_pred ----chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence 111122344566666666665566677777887777778888888888888877776 322 1 1 24778
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHh-hccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYK-NSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS 1428 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~-~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~ 1428 (1866)
++..+..++-.+...++...+.+++.++. .....-.++++.+++.+...+....++++.+|...+..++...|...+..
T Consensus 786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~ 865 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP 865 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 88888887766656666555666666644 33334456788999999999999999999999999999998887654332
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhh
Q 000201 1429 YIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP 1508 (1866)
Q Consensus 1429 l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~ 1508 (1866)
+...++|.++..+.......|..+-..+-.++...+.+.+++|++.
T Consensus 866 ----------------------------------~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 866 ----------------------------------HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred ----------------------------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 3334556666555555677888888889999999988888888775
Q ss_pred hh
Q 000201 1509 IT 1510 (1866)
Q Consensus 1509 i~ 1510 (1866)
-.
T Consensus 912 e~ 913 (1176)
T KOG1248|consen 912 ED 913 (1176)
T ss_pred HH
Confidence 43
No 25
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3e-10 Score=144.02 Aligned_cols=761 Identities=14% Similarity=0.122 Sum_probs=437.8
Q ss_pred HHHHHHHHhhcCCC----ChhhHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCC
Q 000201 877 ARAIGSLIRGMGEE----NFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQR 946 (1866)
Q Consensus 877 ~~aL~~l~~~~g~~----~~~~l~~~L~~~L~-~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~ 946 (1866)
+.+|..+...++.. .|.++...+...+. +..+..+++.++.+|+.+.+.-+...| ...+-.+....-++.
T Consensus 72 ~~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~ 151 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKK 151 (1176)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCc
Confidence 34444444444432 34555555555444 223445888889999999887665544 234455666667888
Q ss_pred hhHHhHHHHHHHHhhhhhc---hhhHhHHHHHHHHHHhhccCC-ChHHHHHHHHHH---HHHHHhhcccchhchHHhHhc
Q 000201 947 ASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADE-NESVRDAALGAG---HVLVEHYATTSLPLLLPAVED 1019 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g---~~f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al---~~i~~~~~~~~i~~llp~l~~ 1019 (1866)
|.+|..+...+..+-..-+ ..-.|-...+...++..+... .+..-...++.+ +..+..++...++.+-..+..
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 9999988887776554221 111232333333333333211 011122233333 333334445555555555555
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc---CCCcHH
Q 000201 1020 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR---SDVSLS 1096 (1866)
Q Consensus 1020 ~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~---~D~~~~ 1096 (1866)
.+...+--++..+++++..+...-++ ... .+...+++..++... +|.-..
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~--------------~l~-------------a~~~a~lL~al~~l~ps~~D~~~t 284 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPT--------------ALA-------------AELNARLLTALMTLSPSENDDLLT 284 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCC--------------cch-------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 55556666888888888877644221 000 111223444444332 232222
Q ss_pred HHHH--HHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHH-HhcccCCCC
Q 000201 1097 VRQA--ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI-LSRGLKDPS 1173 (1866)
Q Consensus 1097 vR~~--A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~-L~~~L~d~~ 1173 (1866)
+... -......++...+......+|.+++.++..+.+..++.-+.+.+++.++...... +.+.+... +...+.-+.
T Consensus 285 ~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf 363 (1176)
T KOG1248|consen 285 VAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF 363 (1176)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH
Confidence 2111 1112223344445555566788888888888888888888999999887754322 23333332 444444444
Q ss_pred ccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCC
Q 000201 1174 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253 (1866)
Q Consensus 1174 ~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 1253 (1866)
..+-..++..+..+.+.+|+ ...+++-..+..+...-.+++..-+..--.++|.....+|++.+-.++|-=+......
T Consensus 364 ~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~- 441 (1176)
T KOG1248|consen 364 HAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLS- 441 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccc-
Confidence 45555667777777777775 3344554555555443344444444455678888899999988777777433111111
Q ss_pred chhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHh------cCCCC--H
Q 000201 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSA------MGDDD--M 1325 (1866)
Q Consensus 1254 ~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~------l~~~~--~ 1325 (1866)
....+++|.|-......+ +.-|...++|...+. +.... .
T Consensus 442 --------------~~RsWLLPvLR~~i~~A~-------------------La~F~~~ivpla~sl~~K~~~l~~~~~~~ 488 (1176)
T KOG1248|consen 442 --------------FTRSWLLPVLRDYIIGAS-------------------LAFFTEYIVPLAMSLQLKAKKLKEAGSQV 488 (1176)
T ss_pred --------------cchhHhHHHHHHhhccCc-------------------HHHHHHHHHHHHHHHHHHHHhhhhccCcH
Confidence 112455665544443322 222333333322211 11111 1
Q ss_pred -HHHHHHHHHHhHhhhcc----ch-hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc---------cchhhhhHHH
Q 000201 1326 -DVQSLAKEAAETVTLVI----DE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS---------KLYLVDEAPN 1390 (1866)
Q Consensus 1326 -~vr~~a~~~l~~l~~~~----~~-~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~---------~~~~~~~~~~ 1390 (1866)
.++....+.|+-+-.-+ +. ..+..+.+.+...+... +..|...|..|..+.+.. ...++.+..+
T Consensus 489 ~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Akn 567 (1176)
T KOG1248|consen 489 SLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhH
Confidence 11222222222221111 11 22566666666666554 589999999999887653 2346678888
Q ss_pred HHHHHHHHhCCCCh------hHHHHHHHHHH-HHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCc----cccCCcC
Q 000201 1391 MISTLIVLLSDSDS------TTVAAAWEALS-RVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGP----ILIPGFC 1459 (1866)
Q Consensus 1391 il~~L~~ll~d~~~------~v~~~A~~aL~-~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~----~~l~g~~ 1459 (1866)
.++.++.....+.. ..+...+.... ..+...+.+....+...+....... +.......... ....+.+
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~-~~s~~~~~~~slLdl~~~~a~~ 646 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDL-DESVASFKTLSLLDLLIALAPV 646 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccc-hhhhhhHHHHHHHHHHHhhhcc
Confidence 99999998874332 33333333333 4445555554444433332221111 11000000000 0000101
Q ss_pred -CCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChh-hhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000201 1460 -LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQ-SLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIII 1537 (1866)
Q Consensus 1460 -~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~-~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~ 1537 (1866)
...+++.++.+.-....+.+..++..+...|..++..-++. ....++..|...|...++. .+...+...+.+|..|+
T Consensus 647 ~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 647 QTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLL 725 (1176)
T ss_pred ccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 11223333322222233447788889999999998763222 2344555666666666655 36678999999999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--------cC---ChhhHHHHHHHHhccCChhHHHHH
Q 000201 1538 RKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--------ST---RVDPLVGDLLSSLQVSDAGIREAI 1606 (1866)
Q Consensus 1538 ~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~--------~~---~~~~~l~~L~~~l~~~~~~vr~~~ 1606 (1866)
+..+.....+++.+++.++=++.+.|...|..|..||-.+..+ .+ .+.+++..|..++-.....++...
T Consensus 726 ~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 726 KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 9999777788999999888888878999999999998777522 12 456677777777655555566665
Q ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHH----HHHHhccCCCCcch
Q 000201 1607 LTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLL----QELLNLASSPSWAA 1682 (1866)
Q Consensus 1607 l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l----~~ll~~~~~~~~~~ 1682 (1866)
+-|+..++...+..++.++...+++.+...+.+.+..++.+|...+..++..+|...+.+.+ +.++.|..+.....
T Consensus 806 Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~ 885 (1176)
T KOG1248|consen 806 IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999999999999999999987655544 44555666655555
Q ss_pred hhhHHHHHHHHHhhCCCcccC
Q 000201 1683 RHGSVLVFATFLRHNPSAISM 1703 (1866)
Q Consensus 1683 r~~~~~~L~~~l~~~p~~~~~ 1703 (1866)
|...-..|..+++.++...+.
T Consensus 886 r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHH
Confidence 655556777778877765543
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2.3e-12 Score=149.38 Aligned_cols=424 Identities=17% Similarity=0.224 Sum_probs=304.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcH----hhHHhHHHHHH-hhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 663 LVAFSDQVVAVREAAECAARAMMSQLSA----QGVKLVLPSLL-KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 663 l~~~~D~~~~VR~~a~~al~~i~~~l~~----~~v~~llp~L~-~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
...++|+--+-|++|+--+..+.+.+.. ..+..++..+. +...+.+-..|+|++..+.+++-+.+..-..++..+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 3456677777888888777777765543 23466666443 455666767777999999999888766655588899
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccch---hHHhHHHHHHHhhCCCChhHHHHHHHHHh--ccccccCC-cchh
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTKYSLDILLQ--TTFVNTVD-APSL 811 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L~~~l~d~~~~vr~al~~L~~--~~~~~~~~-~~~l 811 (1866)
+|.++.+++|++..||.-||.+|-.+++..+.. ++..+...+++...|++..+|.+.+.+-. ...+...+ .-++
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCH
Confidence 999999999999999999999999999988764 45889999999999999888865554433 12222222 4578
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
+.++|.+...+...++.+|.....++..+-. ...-++..|++.++++|.+.+.|+..+||..+-.+++.+...+.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~--- 240 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR--- 240 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---
Confidence 8999999999999999999998888777765 23356788999999999999999999999888777777665433
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
++.+. . ..++.++.+...+.++++.++..++..+..+....|.++-+|
T Consensus 241 -------------s~P~s-~------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~ 288 (675)
T KOG0212|consen 241 -------------SSPSS-M------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY 288 (675)
T ss_pred -------------cCccc-c------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 11110 0 123344555566677788888888888888888899999999
Q ss_pred HHHHHHHHHhhccCCCh-HHHHHHHHHHHHHHHhhccc----chh--chHHhHhcccCCCchHHHHHHHHHHHHHHHHhc
Q 000201 972 LQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~-~VR~~a~~al~~i~~~~~~~----~i~--~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~ 1044 (1866)
++.++..++.++.+..+ .+++.+...-..+...++.+ .++ .++..+...+.++....|.++++.+..+..+.+
T Consensus 289 ~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 289 LSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP 368 (675)
T ss_pred hhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence 99999999999988776 46665554433333333222 122 477777788888888899999999888776654
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHH
Q 000201 1045 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVL 1123 (1866)
Q Consensus 1045 ~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l 1123 (1866)
|.. .. +.+.++..|...++|.+..|-..++.++..++..... .+.+++.
T Consensus 369 ~ql-----------------------~~-----h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~-- 418 (675)
T KOG0212|consen 369 GQL-----------------------LV-----HNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLL-- 418 (675)
T ss_pred chh-----------------------hh-----hccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHH--
Confidence 321 11 2235667777788999999999999999999863221 2333333
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
.+++.+....--.+.-+...+.++|..+.+
T Consensus 419 --sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a 448 (675)
T KOG0212|consen 419 --SLLEMFKEDTKLLEVRGNLIIRQLCLLLNA 448 (675)
T ss_pred --HHHHHHhhhhHHHHhhhhHHHHHHHHHhCH
Confidence 334444444444455566666666665544
No 27
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.3e-09 Score=130.62 Aligned_cols=693 Identities=18% Similarity=0.200 Sum_probs=348.9
Q ss_pred CCHhHHHHHHHHHHHHHhh------cCC-----CC--hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH-HhChhHHHH
Q 000201 868 PIPEVRSVAARAIGSLIRG------MGE-----EN--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA-ALGTVYFEH 933 (1866)
Q Consensus 868 ~~~~vR~~a~~aL~~l~~~------~g~-----~~--~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~-~~g~~~l~~ 933 (1866)
..|+.|......+..+... +++ .. +..++......+.... ..|..++..++.+.. .-+.+.+..
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~--~~r~~aalllsk~~sR~D~~~~~~~ 214 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG--ILRRSAALLLSKLFSRTDVKDLLLS 214 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHcccccHHHHHHH
Confidence 3467777777666666542 122 11 2223333322333322 367777777766542 222334445
Q ss_pred HHHHHHHHhccCChh--HHhHHHHHHHHhhhhhc-hhhHhHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHHHhhccc
Q 000201 934 ILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~--vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~ 1008 (1866)
++..+++.-+...++ .+-+.+..+..+..... ++..||....+..+-..-...+. -+|+ .+..+++.++-.
T Consensus 215 Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrK----llvKl~QRiGlv 290 (1133)
T KOG1943|consen 215 FLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRK----LLVKLVQRIGLV 290 (1133)
T ss_pred HHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHH----HHHHHHHHhhhe
Confidence 555544433332222 45666777766666654 45667766665554443222221 2232 223333322211
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
. -.-...+||...+.-.+.+.+=..-.+.+.++-++. +++|+++.- +..+.++..|+.
T Consensus 291 ~---------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~-~d~e~edv~------------eivE~vie~Lls 348 (1133)
T KOG1943|consen 291 S---------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQ-DDDEGEDVP------------EIVEFVIEHLLS 348 (1133)
T ss_pred e---------cCCCCcchhhhcccchhhhccCccccccCccccccc-ccccccccH------------HHHHHHHHHHHH
Confidence 0 011347899765544443332100001111221221 111111111 122356777778
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHh--ccccccchHHHH
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-SERRQVAGRALGELVRKL--GERVLPSIIPIL 1165 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-~~~R~~A~~~L~~lv~~~--~~~~l~~llp~L 1165 (1866)
.++|.+..||..|++.++.+....|..+.+ .++..++..++--+ +..=..|+-+|+++...- .+..++.++|.+
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~~Lad---~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPPELAD---QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcHHHHH---HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 889999999999999999999999965543 44444444444222 223336777888887541 123456888888
Q ss_pred hcccC--------CCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHH-HHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1166 SRGLK--------DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI-RTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1166 ~~~L~--------d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l-~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+++. .....+|-++|..+..+....++.++.+++..+.+.+ ..++-|++-.+|.+|..||.......|..
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~ 505 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF 505 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC
Confidence 87664 2245689999999999999999999999999888875 46888999999999887765433222210
Q ss_pred hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHH
Q 000201 1237 AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPAL 1316 (1866)
Q Consensus 1237 ~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L 1316 (1866)
|.-++-+. ..+-.+++..+.+
T Consensus 506 --------------------------------------p~Gi~Lis-----~~dy~sV~~rsNc---------------- 526 (1133)
T KOG1943|consen 506 --------------------------------------PHGISLIS-----TIDYFSVTNRSNC---------------- 526 (1133)
T ss_pred --------------------------------------CCchhhhh-----hcchhhhhhhhhH----------------
Confidence 00000000 0011112221111
Q ss_pred HHhcCCCCHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHH
Q 000201 1317 LSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMIS 1393 (1866)
Q Consensus 1317 ~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~-l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~ 1393 (1866)
...+...+. +.+...+++.+... +.+-+..+|..+++++..+....+..+.. ..++
T Consensus 527 ------------------y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~---~~L~ 585 (1133)
T KOG1943|consen 527 ------------------YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD---YVLP 585 (1133)
T ss_pred ------------------HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---cchh
Confidence 111111110 11233344433333 55555666666666666665544433332 2344
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHH-
Q 000201 1394 TLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFL- 1472 (1866)
Q Consensus 1394 ~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~- 1472 (1866)
.++......+...|..+..+.+.++....+-. .++..+.+. .+ .++..++|.+.
T Consensus 586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~--~~~~~l~e~-----------------~i------~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLE--PVIKGLDEN-----------------RI------AGLLSIIPPICD 640 (1133)
T ss_pred hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh--hhhhhhHHH-----------------Hh------hhhhhhccHHHH
Confidence 44555555666666666666666655432211 000000000 00 01111222222
Q ss_pred HhhccCC-HHHHHHHHHHHHHHHhhcChhhhhhhhhhhhH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHH
Q 000201 1473 QGLISGS-AELREQAALGLGELIEVTSEQSLKEFVIPITG-PLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQ 1550 (1866)
Q Consensus 1473 ~~L~~~~-~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~-~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~ 1550 (1866)
....-|. .-.|...+..+..+...- ...+..++..=+. .+...+.. +..+|.++..++++++...-..-..+...
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~-~~~~~~~v~e~~~~ll~~~l~~--~n~i~~~av~av~~l~s~y~~~d~~~~~~ 717 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSK-DRLFQDFVIENWQMLLAQNLTL--PNQIRDAAVSAVSDLVSTYVKADEGEEAP 717 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHhcCchhhhH
Confidence 1111111 222333333333332221 1112223222111 12222322 33899999999999887532111111124
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHH--hccCChh-hHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhcCccc----
Q 000201 1551 LQTTFIKCLQDS-TRTVRSSAALALGKLS--ALSTRVD-PLVGDLLSSLQVS-DAGIREAILTALKGVLKHAGKSV---- 1621 (1866)
Q Consensus 1551 L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~--~~~~~~~-~~l~~L~~~l~~~-~~~vr~~~l~aL~~vi~~~~~~l---- 1621 (1866)
++...+..+.++ ++.+|.-..-++|.+- .++.+.. .+...++...-.. .++-|...+.++..++...+...
T Consensus 718 li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 718 LITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 666666666666 7789988888888873 2333332 2323333332211 46678888899998887776332
Q ss_pred cHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhcCh------hHHHHHHHHHHhccCCCCcchhhhHHHHHH
Q 000201 1622 SSAVKIRVYSVLKDLVYHD----DDHVRVSAASILGIMSQCMED------GQLADLLQELLNLASSPSWAARHGSVLVFA 1691 (1866)
Q Consensus 1622 ~~~~~~~i~~~L~~~l~~~----~~~vr~~aa~~l~~L~~~~~~------~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 1691 (1866)
.+.+++.+++.+.+...++ ...||++|...+..+....+. +.+...+..++.+.-+.-...|.-+..++.
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~ 877 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALN 877 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 2344555555554433333 257999999999887665552 223344433443332222223555555667
Q ss_pred HHHhhCCC
Q 000201 1692 TFLRHNPS 1699 (1866)
Q Consensus 1692 ~~l~~~p~ 1699 (1866)
.++.+.|.
T Consensus 878 qi~~~~~~ 885 (1133)
T KOG1943|consen 878 QIVVHSPS 885 (1133)
T ss_pred ceeecCCC
Confidence 76666443
No 28
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.9e-08 Score=123.76 Aligned_cols=574 Identities=17% Similarity=0.194 Sum_probs=312.3
Q ss_pred hHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHH----HHHHHHHHHHHHHhC-cCchhcHHhHHHHHHH
Q 000201 590 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRR----EGALLAFECLCEKLG-RLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r----~~al~al~~L~~~l~-~~~~p~v~~llp~ll~ 664 (1866)
..|+.|+-.++.++... +.. . .+..|+...+.-+..+..+ .+.+.++..+..... +..-||+...+..+-.
T Consensus 190 ~~r~~aalllsk~~sR~--D~~-~-~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~ 265 (1133)
T KOG1943|consen 190 ILRRSAALLLSKLFSRT--DVK-D-LLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSV 265 (1133)
T ss_pred hhHHHHHHHHHHHcccc--cHH-H-HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcc
Confidence 67888888888777532 111 1 1455565555444444433 566666666666554 3455666555555443
Q ss_pred HcCCCC--HHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC---------------h
Q 000201 665 AFSDQV--VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA---------------P 727 (1866)
Q Consensus 665 ~~~D~~--~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~---------------~ 727 (1866)
+-.+.+ .-+|+.-.....+|.-.. -.-.+++|+...+.-.+.+++-... .
T Consensus 266 ~~~~~d~~~llrKllvKl~QRiGlv~-------------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~ 332 (1133)
T KOG1943|consen 266 CRESNDGQSLLRKLLVKLVQRIGLVS-------------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEG 332 (1133)
T ss_pred cccccccHhHHHHHHHHHHHHhhhee-------------cCCCCcchhhhcccchhhhccCccccccCcccccccccccc
Confidence 332222 233333333222221100 0114578999888766665533221 1
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh-h-HH-HHHHHHHhccccc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-H-TK-YSLDILLQTTFVN 804 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~-~-vr-~al~~L~~~~~~~ 804 (1866)
+++...+..++..++..++|.+..||..|++.++.+.......-..+++...++.+ .|.+ + .- .++-.+...+--.
T Consensus 333 edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~-~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 333 EDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLF-NPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhc-CcCCchhHHHHHHHHHHHHHhcC
Confidence 12334455677788889999999999999999999998776333356666666633 2322 1 11 2333333332222
Q ss_pred cCCcchhhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHH-HhcCCCHhHHHH
Q 000201 805 TVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVDPIPEVRSV 875 (1866)
Q Consensus 805 ~~~~~~l~~l~p~L~~~l~--------d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~-~l~d~~~~vR~~ 875 (1866)
-.-...+..++|.+.+++. .....+|..||-+.-.++.. ..+.++.|++..+.+.|.. .+-|+.-.+|.+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 2333467789999998774 23568999999999999885 3567889999988877665 567999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-hccCChhHHhHHH
Q 000201 876 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRASVRDGYL 954 (1866)
Q Consensus 876 a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~-l~~~~~~vR~~al 954 (1866)
|..|+-..+...|. ++.-++.+ ... +.-+...|......+...+..+. .+...++..++.. +.+-+..+|+.+.
T Consensus 491 AsAAlqE~VGR~~n--~p~Gi~Li-s~~-dy~sV~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 491 ASAALQENVGRQGN--FPHGISLI-STI-DYFSVTNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred HHHHHHHHhccCCC--CCCchhhh-hhc-chhhhhhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence 99888877766543 22222211 111 11111233333333333222221 1334444444433 4445666666666
Q ss_pred HHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 955 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 955 ~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
.++..|....++. .....+|+++......+...|..+.-+...++..+..-. |.+. .+ ...|
T Consensus 566 ~aL~~Ls~~~pk~---~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-----~~~~-~l----~e~~----- 627 (1133)
T KOG1943|consen 566 YALHKLSLTEPKY---LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-----PVIK-GL----DENR----- 627 (1133)
T ss_pred HHHHHHHHhhHHh---hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-----hhhh-hh----HHHH-----
Confidence 6666666555542 223566666666555566666666555555444321100 0000 00 0000
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhhcC
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV--SLSVRQAALHVWKTIVANT 1112 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~--~~~vR~~A~~~l~~l~~~~ 1112 (1866)
+. ....+++.++...-+. ....|++....+..+..+.
T Consensus 628 ------------------------------------i~-----~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~ 666 (1133)
T KOG1943|consen 628 ------------------------------------IA-----GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSK 666 (1133)
T ss_pred ------------------------------------hh-----hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhcc
Confidence 00 0011222222111110 1356777777777777666
Q ss_pred hhhHHHhHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--cccc-chHHHHhcccCC-CCccchhhHHHHHHHH
Q 000201 1113 PKTLKEIMPV-LMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLP-SIIPILSRGLKD-PSASRRQGVCIGLSEV 1187 (1866)
Q Consensus 1113 p~~l~~~l~~-l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l~-~llp~L~~~L~d-~~~~vr~~a~~~L~~l 1187 (1866)
++.+.+++-. ....+.+.+.+++ ..|..|..++++++...-. .-.. .++......+.+ .+..+|.+...+++.+
T Consensus 667 ~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~l 745 (1133)
T KOG1943|consen 667 DRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVL 745 (1133)
T ss_pred chhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccC
Confidence 6555454433 3444445555555 8899999999999875422 1111 233333333343 3667788877776643
Q ss_pred HHhhchhhHHhh-HhhHHHHHHHhh-cCCcHHHHHHHHHHHHHHHHHhch----hhHhhHHHHHHHhccC
Q 000201 1188 MASAGKSQLLSF-MDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHALED 1251 (1866)
Q Consensus 1188 i~~~~~~~l~~~-l~~ll~~l~~~L-~d~~~~vr~~A~~al~~l~~~~g~----~~~~~ilp~Ll~~L~~ 1251 (1866)
..+.+.-+ .+.+...+.... .|..++-|.....++..+++..+. ....++...|++.+.+
T Consensus 746 ----p~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ldd 811 (1133)
T KOG1943|consen 746 ----PSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDD 811 (1133)
T ss_pred ----cHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11222222 233344443333 344778888888888888877662 3456677777777754
No 29
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=6.3e-11 Score=155.16 Aligned_cols=491 Identities=16% Similarity=0.173 Sum_probs=320.9
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
+...|+.+..-|..+.. .|.+. ....+.+.+++.+ ++...|..+-.++..+...- ...+.-+...+.+-+.
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~~~---~~~~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~----~~~~~l~~n~l~kdl~ 89 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGYDI---SFLFMEVIKLISS-KDLELKRLGYLYLSLYLHED----PELLILIINSLQKDLN 89 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT------GSTHHHHHCTCSS-SSHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHH-cCCCC---chHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHhhc
Confidence 44556655555444332 23221 1334555556664 45555555555444444322 2245567788888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 747 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D 747 (1866)
++++.+|-.|..++..+. +++-.+.++|.+.+.+.+++|.+|+.|+.++..+....|+.+... +++.+.+++.|
T Consensus 90 ~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d 163 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSD 163 (526)
T ss_dssp SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTH
T ss_pred CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccC
Confidence 999999999999888876 466668899999999999999999999999999999988766442 68888899999
Q ss_pred CChHHHHHHHHHHHHHHhhccc---hhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh--hhHHHHHHHh
Q 000201 748 THPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRG 821 (1866)
Q Consensus 748 ~~~~VR~aA~~aL~~l~~~i~~---~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l--~~l~p~L~~~ 821 (1866)
+++.|+.+|+.++..+ +.-.+ +.+..+++.+.+.+.++++..+ ..++.+..... ...... ..+++.+...
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~---~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP---MEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS---SSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc---CChhhhhHHHHHHHHHHH
Confidence 9999999999999988 21111 2345666677777778887665 45555543211 111122 4678888888
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 000201 822 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 901 (1866)
Q Consensus 822 l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~ 901 (1866)
+.+.++.+...++..+..+.. . .+....+++.+..++.++++.+|..+..++..++....+..+ .. ...+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~---~----~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~-~~~~~ 310 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSP---S----PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQ-SLILF 310 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---S----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-TH-HHHHH
T ss_pred hhccccHHHHHHHHHHHHhhc---c----hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hh-hhhhh
Confidence 888888998888887776544 1 125677889999999999999999999999988876522212 11 11223
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHH
Q 000201 902 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 980 (1866)
Q Consensus 902 ~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll 980 (1866)
.+..+.+..+|..++..+..++. .+.+..+++.+...+.+ .+..+|..++..++.++..++..+..|++.++.
T Consensus 311 ~l~~~~d~~Ir~~~l~lL~~l~~---~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~--- 384 (526)
T PF01602_consen 311 FLLYDDDPSIRKKALDLLYKLAN---ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLK--- 384 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHH---
T ss_pred eecCCCChhHHHHHHHHHhhccc---ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHH---
Confidence 44434556688888877766654 33556677777777743 477788888888888888877665555554433
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1060 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~ 1060 (1866)
.+....+.+...+...+..++...+.
T Consensus 385 -ll~~~~~~~~~~~~~~i~~ll~~~~~----------------------------------------------------- 410 (526)
T PF01602_consen 385 -LLEISGDYVSNEIINVIRDLLSNNPE----------------------------------------------------- 410 (526)
T ss_dssp -HHHCTGGGCHCHHHHHHHHHHHHSTT-----------------------------------------------------
T ss_pred -hhhhccccccchHHHHHHHHhhcChh-----------------------------------------------------
Confidence 33333334433333333333322110
Q ss_pred cchHHHHHHHHHHhchhhhHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHH
Q 000201 1061 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1139 (1866)
Q Consensus 1061 ~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~-D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R 1139 (1866)
.+...+..++.... -.+..++..++.++|.++...+. . ...+.++..+...+...+..+|
T Consensus 411 -----------------~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~~~~~~~~~l~~~~~~~~~~vk 471 (526)
T PF01602_consen 411 -----------------LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-ESAPDILRSLIENFIEESPEVK 471 (526)
T ss_dssp -----------------THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-THHHHHHHHHHHHHTTSHHHHH
T ss_pred -----------------hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-ccHHHHHHHHHHhhccccHHHH
Confidence 01112222222222 23456788888888887765443 1 1466667777777777778899
Q ss_pred HHHHHHHHHHHHHhccc-cccchHHHHhcccC--CCCccchhhHHHHHH
Q 000201 1140 QVAGRALGELVRKLGER-VLPSIIPILSRGLK--DPSASRRQGVCIGLS 1185 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~--d~~~~vr~~a~~~L~ 1185 (1866)
.....++..+....+.. ..+.+.+.+..... +.++++|..|+..+.
T Consensus 472 ~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 472 LQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999877653 55688888888777 779999998887654
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.48 E-value=1.8e-10 Score=150.81 Aligned_cols=438 Identities=16% Similarity=0.163 Sum_probs=314.1
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhc
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 614 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~ 614 (1866)
+--++..+.+.|.++++.++..+..++..+... +..+..++ .+..++.++++.+|+.|+.++..+.+.. ++.+...
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~-~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIP-DVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHH-HHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHH-HHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHH
Confidence 445788888999999999999999998875421 22333343 3445556888899999999999999863 4554433
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV- 693 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v- 693 (1866)
+++.+.+.+.++ ++.++.+|+.++..+ +..++.+.+.+..+++.+...++++++-++......+..++..- +...
T Consensus 153 -~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~~~~ 228 (526)
T PF01602_consen 153 -LIPKLKQLLSDK-DPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PEDAD 228 (526)
T ss_dssp -HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HHHHH
T ss_pred -HHHHHhhhccCC-cchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hhhhh
Confidence 788888888654 578888888888888 22222222556677777777779999999888888887765432 2333
Q ss_pred -HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH
Q 000201 694 -KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 772 (1866)
Q Consensus 694 -~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i 772 (1866)
..+++.+...+.+.++.+..+++.++..+....+ .+..+++.+..++.++++.+|..++.+|..++... .+.+
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v 302 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh
Confidence 5688888888888899999999988886655322 44578888999999999999999999999998654 2333
Q ss_pred HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 773 ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
......+.-...+++..+| .+++.+.... +......+++.+...+.+. +.+.|..++..++.++.....
T Consensus 303 ~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~-----~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---- 373 (526)
T PF01602_consen 303 FNQSLILFFLLYDDDPSIRKKALDLLYKLA-----NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---- 373 (526)
T ss_dssp GTHHHHHHHHHCSSSHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----
T ss_pred hhhhhhhheecCCCChhHHHHHHHHHhhcc-----cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----
Confidence 3222223333346777777 5777665422 2345677899999988554 788999999999999985422
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh-h
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-V 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~-~ 929 (1866)
..+..++.+.+++......+...+...+..+....+ +.....+..+.+.+.+-.....+..+++.+|+.+..... .
T Consensus 374 --~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~-~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~ 450 (526)
T PF01602_consen 374 --DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP-ELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE 450 (526)
T ss_dssp --SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST-TTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT
T ss_pred --hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh-hhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc
Confidence 234456677777777777888888888888887643 344667888888887766667888888999998877764 3
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc--CCChHHHHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA--DENESVRDAALGAGHV 1000 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~--d~~~~VR~~a~~al~~ 1000 (1866)
....++..+.+.....++.+|...+.++..+....+..- ..+.+++.+.+... +.+.+||+.|..-+..
T Consensus 451 ~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 451 SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 455666777777777788899999999998887776421 23467777778777 7799999988765543
No 31
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=6.4e-08 Score=121.07 Aligned_cols=643 Identities=15% Similarity=0.176 Sum_probs=354.9
Q ss_pred hhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCcccccc-chheeeecCCchhHHHH-H--------HHHhhhcC
Q 000201 293 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVS-TSLWIAVHDPEKSVAEA-A--------EDIWDRYG 362 (1866)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--------~~~w~~~~ 362 (1866)
.+++.+++.+|+.+|+..|++|+++|.+... ...|. ..+-+..-|..+.+.+. | .+.|....
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 4577889999999999999999999997651 12233 33344555665555333 2 25698762
Q ss_pred -----CccCCC----h-hhhhhhcCCCCHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchh
Q 000201 363 -----YDFGTD----Y-SGLFKALSHSNYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 431 (1866)
Q Consensus 363 -----~~~~~~----~-~~ll~~l~~~~~~vr~~aa~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R 431 (1866)
+.+.++ + ..++.++.+....+|.+--..+..++ ..+|+.|++++...-..- ... ....=
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~L----qs~------~~~~v 144 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLL----QSQ------DANHV 144 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHh----cCc------chhhH
Confidence 223322 2 66778888888889988888887776 446776666666553321 111 11122
Q ss_pred hHHHHHHHHhhhhcC--CCC----hH----HHHHHHHh---hhcCCCcHHHH---HHHHHHHHHHHH------hhcccch
Q 000201 432 QGIALALHSAADVLR--TKD----LP----VIMTFLIS---RALADTNADVR---GRMLNAGIMIID------KHGRDNV 489 (1866)
Q Consensus 432 ~~~~~~l~~~~~~~~--~~~----~~----~~~~fli~---~~l~d~~~~vr---~~~~~a~~~~i~------~~g~~~~ 489 (1866)
-++..+|..++.... .++ +. .+|+-+.+ +.+.+.+.... .-++..-...+. ....+..
T Consensus 145 y~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f 224 (1010)
T KOG1991|consen 145 YGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETF 224 (1010)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhH
Confidence 445666666665322 111 11 22222222 23334433322 222221111111 1123333
Q ss_pred hhhHHHHHHhhcCCCCChh-----------hhhhHHHHHHHHHHHHhhhhccCC---c------------chHHHHHH--
Q 000201 490 SLLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKDD---P------------KVHAVVDK-- 541 (1866)
Q Consensus 490 ~~ll~~le~~L~~~~~~~~-----------~~~~vr~~av~~l~~i~~~l~~~~---~------------~~~~l~~~-- 541 (1866)
..-+.+|-..++.+-+.+. -+-..+.-|...+.++...+.+.. + +.+.+...
T Consensus 225 ~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 225 TSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455444332111 011245556777777765544321 0 01112222
Q ss_pred -HHHhcCC---CcHHHHHHHHhhhhhhhH------hhhhh--------------------------hHHHHHHHHHHHHc
Q 000201 542 -LLDVLNT---PSEAVQRAVSSCLSPLMQ------SMQDE--------------------------APTLVSRLLDQLMK 585 (1866)
Q Consensus 542 -l~~~l~~---~~~~v~~~~~~~l~~lv~------~~~~~--------------------------~~~~l~~ll~~L~~ 585 (1866)
.+..++. -++.|-.-+..-+...+. ..... ..++++.-++-.
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~-- 382 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIF-- 382 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchh--
Confidence 2222222 111111111111100000 00001 112222211111
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHhCcCchhc---H
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGRLFEPY---V 655 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~-------~~~~~~~r~~al~al~~L~~~l~~~~~p~---v 655 (1866)
++-+..+.+|...+-.+++..|.+.+. ++++++.+.+. +.++++..+||+.+++.+++.+.+ -.|| +
T Consensus 383 ed~~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K-~s~~~~~m 459 (1010)
T KOG1991|consen 383 EDGYSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK-KSPYKSQM 459 (1010)
T ss_pred cccCCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc-CCchHHHH
Confidence 111234556777888888888877773 67888887664 456789999999999999988763 2333 3
Q ss_pred H-hHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhcHhh-HHhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhCh---h
Q 000201 656 I-QMLPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQG-VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---Q 728 (1866)
Q Consensus 656 ~-~llp~ll~~~~D~~~~VR~~a~~al~~i~-~~l~~~~-v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~---~ 728 (1866)
. -+++.++..+.++.-..|..|++.+..+. -.++... ....+.....+|. |++-.+|..|+.+|..+..... .
T Consensus 460 E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 460 EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 3 35677788899999999999999999998 4455544 3777787888887 7889999999999999998866 3
Q ss_pred hHHhhhcchhHHHhhhccCCChHHHHHHHHHH-HHHHhhccc--hh-HHhHHHHHHHhhCC---CChhH--H--H---HH
Q 000201 729 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHT--K--Y---SL 794 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~-i~~lv~~L~~~l~d---~~~~v--r--~---al 794 (1866)
.+..++|+++..++.+.++.+.+.-....+.+ ..+++.+.. .+ .+.+...+++.+.+ .++.. + . ++
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 48899999999999999987766655555443 344444432 12 25566666676653 11111 1 1 22
Q ss_pred HHHHhc--cc--cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 795 DILLQT--TF--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 795 ~~L~~~--~~--~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.++... ++ ...+-...-+.++|++...++..-.+.-..+++++.++.-.. +++.|..-.+++.+.+.+++.
T Consensus 620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~---~~Isp~mW~ll~li~e~~~~~-- 694 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS---KEISPIMWGLLELILEVFQDD-- 694 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh---cccCHHHHHHHHHHHHHHhhh--
Confidence 222221 11 111111122344555555565555566666666666554321 345555556666666665542
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--Chh
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RAS 948 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~ 948 (1866)
|-+||++++|++-+.+.-+... .. -...+...+...+...+.+. ...
T Consensus 695 -----------------~~dyf~d~~~~l~N~vt~g~~~-~~-------------s~~~y~~il~~i~~~~l~~e~~~D~ 743 (1010)
T KOG1991|consen 695 -----------------GIDYFTDMMPALHNYVTYGTPS-LL-------------SNPDYLQILLEIIKKVLTSENGEDS 743 (1010)
T ss_pred -----------------hHHHHHHHHHHHhhheeeCchh-hh-------------ccchHHHHHHHHHHHHHcCCCCchH
Confidence 2357888888886665433321 00 01123333333444444442 344
Q ss_pred HHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccC--CChHHHHHH
Q 000201 949 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAA 994 (1866)
Q Consensus 949 vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d--~~~~VR~~a 994 (1866)
-.++++.++..+...++.....|++..+...+..+.. +....|..+
T Consensus 744 d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~ 791 (1010)
T KOG1991|consen 744 DCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVML 791 (1010)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHH
Confidence 4567889999999888877777777777777776655 333444433
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=99.41 E-value=1.7e-08 Score=130.33 Aligned_cols=500 Identities=13% Similarity=0.095 Sum_probs=313.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
.+-..| ++.+...|+.|.+.+..... .|.+. ..+++.+.+++..+ +...|..+...+...++. -.....-
T Consensus 36 ELr~~L-~s~~~~~kk~alKkvIa~mt-~G~Dv---S~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~----~pelalL 105 (746)
T PTZ00429 36 ELQNDL-NGTDSYRKKAAVKRIIANMT-MGRDV---SYLFVDVVKLAPST-DLELKKLVYLYVLSTARL----QPEKALL 105 (746)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHHHH-CCCCc---hHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccc----ChHHHHH
Confidence 333444 34444566666665444332 23222 23555666666654 455565454444444322 1223455
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.+.+-+.|+++.+|-.|..++..|. .+.-++.+++.+.+.+.|.++.+|+.|+.++..+....|+.+.. ..+
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~ 180 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDF 180 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cch
Confidence 6788888999999999998888776653 24555788899999999999999999999999998887765322 256
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
++.+.+++.|+++.|..+|..+|..+...-.+. .....+..++..+.+-++-.+ ..++.+.. +.+ .+......+
T Consensus 181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P-~~~~e~~~i 257 (746)
T PTZ00429 181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRP-SDKESAETL 257 (746)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCC-CCcHHHHHH
Confidence 677888899999999999999999997643322 124455556666654444333 45555533 222 123345678
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
+..+...+++.++.|...|+.++-.+.... ++..+......+.+.+..+ ....+++|..+.+.+..++... +..|..
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~ 334 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT 334 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH
Confidence 888888888999999999999888776532 1112222233343444444 4567899999999998888744 233333
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 974 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~ 974 (1866)
-+..++-.. ++..+ +|...++.|..++ ..+..+.++..+.+.+.+.+.+++..++.+++.++..++. ....
T Consensus 335 ~~~~Ff~~~-~Dp~y-IK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~ 405 (746)
T PTZ00429 335 NLDSFYVRY-SDPPF-VKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPD 405 (746)
T ss_pred HHHhhhccc-CCcHH-HHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHH
Confidence 233222222 34434 6777666665554 3445677888888888888999999999999999987765 4556
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhccc---CCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 975 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 975 il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l---~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
++..++..+.+..+-+ ..++..+..+++.++... +++.+.... .=.+...|.+.++++|+....+.
T Consensus 406 cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~------- 474 (746)
T PTZ00429 406 CANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE------- 474 (746)
T ss_pred HHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh-------
Confidence 6666777776544434 356777888887776542 333333221 11234577777888888642211
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l 1131 (1866)
. -.+++..+.....+.+..||.+.+.+...+.-..|...+..+..++.....
T Consensus 475 ---------------------~-----a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~-- 526 (746)
T PTZ00429 475 ---------------------N-----GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTT-- 526 (746)
T ss_pred ---------------------h-----HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh--
Confidence 0 012333333334566788998888887777777775444444444433221
Q ss_pred cCCCHHHHHHHHHHH
Q 000201 1132 ASSSSERRQVAGRAL 1146 (1866)
Q Consensus 1132 ~~~~~~~R~~A~~~L 1146 (1866)
.+.++++|.-|..-.
T Consensus 527 ~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 527 HSDDPDVRDRAFAYW 541 (746)
T ss_pred cCCChhHHHHHHHHH
Confidence 246778888776544
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.39 E-value=3.4e-08 Score=127.64 Aligned_cols=494 Identities=12% Similarity=0.078 Sum_probs=311.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcc-hHHHHHH
Q 000201 463 ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVVDK 541 (1866)
Q Consensus 463 ~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~-~~~l~~~ 541 (1866)
..++..-+..++.-....... |.+....++.++. .+..+ +-.+|.-+...+...+ ..+|. .--.+..
T Consensus 42 ~s~~~~~kk~alKkvIa~mt~-G~DvS~LF~dVvk-~~~S~------d~elKKLvYLYL~~ya----~~~pelalLaINt 109 (746)
T PTZ00429 42 NGTDSYRKKAAVKRIIANMTM-GRDVSYLFVDVVK-LAPST------DLELKKLVYLYVLSTA----RLQPEKALLAVNT 109 (746)
T ss_pred HCCCHHHHHHHHHHHHHHHHC-CCCchHHHHHHHH-HhCCC------CHHHHHHHHHHHHHHc----ccChHHHHHHHHH
Confidence 344555555555444444433 5554444444554 43331 1456665555444443 33333 3346788
Q ss_pred HHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHH
Q 000201 542 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 621 (1866)
Q Consensus 542 l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~ 621 (1866)
+.+.+.++++.+|..+..++..+.. ....+.+...+.+.+.+.++-+|+.|+.|+..+.... ++.+...++++.|.
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~ 185 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLV 185 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHH
Confidence 8999999999999999888765432 2233444444555667888999999999999988743 34433446778888
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HhhHHhHHHH
Q 000201 622 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGVKLVLPS 699 (1866)
Q Consensus 622 ~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~--~~~v~~llp~ 699 (1866)
+.+.+ .++.+...|+.++..+.+..+..+.. ....+..++..+.+-++--+-...+.+ ....+ ......++..
T Consensus 186 ~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~ 260 (746)
T PTZ00429 186 ELLND-NNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTR 260 (746)
T ss_pred HHhcC-CCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHH
Confidence 87765 46778888888888887755433321 233344455555544433333333333 22222 1234678888
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHH
Q 000201 700 LLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 778 (1866)
Q Consensus 700 L~~~L~~~~w~~r~~a~~~L~~l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 778 (1866)
+...|.+.+.-+-.+|+.++-.+.... ++.....+..+.+.++.+ ..+++++|..+...+..+..... ..+...+..
T Consensus 261 l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~ 338 (746)
T PTZ00429 261 VLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDS 338 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHh
Confidence 888899999999999999988877543 233333333444555555 45678999999999988876432 233444555
Q ss_pred HHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhh
Q 000201 779 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 857 (1866)
Q Consensus 779 L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~l 857 (1866)
+.-..+||.. ++ ..++.|..+. +......++..|.....+.+.+.++.+..++|.++..+. ...+.+
T Consensus 339 Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~------~~a~~c 406 (746)
T PTZ00429 339 FYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD------SVAPDC 406 (746)
T ss_pred hhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh------HHHHHH
Confidence 5555677764 55 5777766532 233556788888888889999999999999999997442 245667
Q ss_pred hHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhc--ccCCCHHHHHHHHHHHHHHHHHhChhHHHHHH
Q 000201 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 935 (1866)
Q Consensus 858 l~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L--~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll 935 (1866)
+..|.+++.+...-+ ..++..+..+.......+ +++.|...+ ..-.++..|...++.+|+.+..... ...++
T Consensus 407 V~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~~L 480 (746)
T PTZ00429 407 ANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKDII 480 (746)
T ss_pred HHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHHHH
Confidence 778888887654433 356777778777655432 455555433 2223344677778888998765432 34555
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc-c-CCChHHHHHHHHHHHHH
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHVL 1001 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l-~-d~~~~VR~~a~~al~~i 1001 (1866)
..++..+...++.||-..+.+...+....+.+..+. +..+++.+ . +.+++||+.|.--++.+
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~----l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQ----LNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHH----HHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 555566666788999988888888777776554443 34444333 3 57789999887544433
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.2e-10 Score=139.00 Aligned_cols=379 Identities=18% Similarity=0.160 Sum_probs=265.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
.+.++......+...+..+..++..+.+.-.. ..+ ..++|.+++.|. +.+...+..|+++|.+++.+.+++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 44555555555566677777777777654322 111 578999999996 566999999999999999988776433
Q ss_pred hh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc---hhH-HhHHHHHHHhhCCCCh--hHHHHHHHHHhcccc--
Q 000201 733 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEI-ASLVPTLLMGLTDPND--HTKYSLDILLQTTFV-- 803 (1866)
Q Consensus 733 ~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~---~~i-~~lv~~L~~~l~d~~~--~vr~al~~L~~~~~~-- 803 (1866)
.. ...+|.+..++.+++..|+..|+|||+.++..-.. -.+ ...++.|+..+..+.. .+|.+.-+|...--.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 22 36889999999999999999999999999864321 112 4567788888877664 556655555542111
Q ss_pred ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 804 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 804 ~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
+...-.....++|.|.+++.+.+.++...||.++..+... ..+.+.-.+ -.++|.|..+|..+.+.++..|.+++|.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 1111134677899999999999999999999999999873 222222222 3578999999999999999999999999
Q ss_pred HHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-HHHHHHHHHHHhccCChhHHhHHH
Q 000201 883 LIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASVRDGYL 954 (1866)
Q Consensus 883 l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l~~ll~~l~~~l~~~~~~vR~~al 954 (1866)
++...+.. .-...+|.|...+........|..+++.++.+..+-... . -..++|.++..++..+...|..|.
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 77543322 112467777777775555558899999999998843322 1 146889999999999999999999
Q ss_pred HHHHHhhhhhchhhHhHHH--HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc------hhc------hHHhHhcc
Q 000201 955 TLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS------LPL------LLPAVEDG 1020 (1866)
Q Consensus 955 ~~l~~L~~~~g~~f~~~l~--~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~------i~~------llp~l~~~ 1020 (1866)
++++.++.....+-..|+- .+++++...|.-.+..+-..++.++..+.+...... ... -+..++..
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 9999988776666666763 388888888877777776677777777665322111 111 12223333
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 000201 1021 IFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1021 l~d~~w~vR~~s~~ll~~l 1039 (1866)
-.+++..+...+...+...
T Consensus 466 Q~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 466 QSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred hccccHHHHHHHHHHHHHh
Confidence 3445656666666666554
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.3e-10 Score=136.82 Aligned_cols=342 Identities=19% Similarity=0.173 Sum_probs=244.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
.++..+.+ ++.+.+..+.+.+-.+...-. +..+-..+++|.+.+.+...+++..+..|..++..++.+....-.-+
T Consensus 70 ~~~~~~~S-~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 70 LMLAALYS-DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34444433 334456666666655554321 22222347889999988777778889999999999998766544444
Q ss_pred HH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---hH-HhHHHHHHhhcCCCCh-hhHHHHHHHHHHHHhhC-h
Q 000201 655 VI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-P 727 (1866)
Q Consensus 655 v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~v-~~llp~L~~~L~~~~w-~~r~~a~~~L~~l~~~~-~ 727 (1866)
+. ..+|.+..++..++..|++.|.||++.|+..-+.. .+ ..++++|+..+..... ...+.+.++|.+++.+. |
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 43 58999999999999999999999999998755442 22 4577888888776554 77788999999999986 5
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-----HhHHHHHHHhhCCCChhHH-HHHHHHHhcc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-----~~lv~~L~~~l~d~~~~vr-~al~~L~~~~ 801 (1866)
.-....+..++|.|..++.+.+++|..-|||++..+...- ++.+ ..++|.|...+..+...++ .|+.+++...
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 4444566789999999999999999999999999998654 3333 4678999999998887777 6888877622
Q ss_pred ccccC--CcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHH
Q 000201 802 FVNTV--DAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAA 877 (1866)
Q Consensus 802 ~~~~~--~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~ 877 (1866)
...+. ..-.-...+|.|...+. .....+|+.||.+++|++. +.++.+...+ ..++|.|..+++.....+|+.|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 21110 01122346788888777 4555699999999999987 5555554443 36899999999999999999999
Q ss_pred HHHHHHHhhcCCCCh-----hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 878 RAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 878 ~aL~~l~~~~g~~~~-----~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
.+++.+.....++.. ..+++.+.+.|.-.. ...-..+..++..+..
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D-~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD-VKIILVALDGLENILK 436 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC-hHHHHHHHHHHHHHHH
Confidence 999998875444321 236677777774332 2234455566665544
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.33 E-value=1.3e-10 Score=157.90 Aligned_cols=273 Identities=22% Similarity=0.256 Sum_probs=207.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.|...+.|+++.||..|..+|..+.. +..+|.|...|+|+++.+|..|+..|+.+.+..+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45677788899999999999999988742 45778888999999999999999999887653322
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
.+.+...|+|+++.||.+|+.+|+.+.. .+ .+.+.+.+.|++..+| .++..|... +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2356677889999999999999998752 11 1346678899999998 577777642 11 24
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 896 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~ 896 (1866)
.+...+.|.++.+|..++..|+.+... . ...++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 466789999999999999999988651 1 1125677788999999999999999988643 1 2233
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHH
Q 000201 897 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 976 (1866)
Q Consensus 897 ~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il 976 (1866)
+.+...+.+ .++.+|..++..|+.+. . ++-++.+...+.++++.||..++.+|+.+. + -+...
T Consensus 810 ~~l~~aL~d-~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~------~~~a~ 872 (897)
T PRK13800 810 AAATAALRA-SAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---G------DPAAR 872 (897)
T ss_pred HHHHHHhcC-CChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C------CHHHH
Confidence 456666655 45679999999997643 2 234577788889999999999999998861 1 12356
Q ss_pred HHHHhhccCCChHHHHHHHHHHH
Q 000201 977 PAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 977 ~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
+.+...++|++.+||..|.+++.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66778889999999999988875
No 37
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=1.4e-10 Score=134.39 Aligned_cols=251 Identities=12% Similarity=0.044 Sum_probs=189.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
.+.|...+.|++..||..+..+|..+-. ..+++.+...+.+++..+|..++..||.+...... ....+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~ 92 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF 92 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH
Confidence 4556667799999999999999887643 45677777778999999999999999997642211 23566
Q ss_pred HHHhhh-ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHH
Q 000201 739 PKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 739 ~~l~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.|..+ ++|+++.||..|+.+|+.++..-..+ ....++.+...+.|++..|| .+...|.... -...++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHHHH
Confidence 777765 79999999999999999986432211 24566677788889988898 4566664311 135789
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 896 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~ 896 (1866)
.|...++|.++.+|..|+..+|.+.. .. +...+.|...+.|+++.||..|+.+||.+.. +..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~--~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-------~~av 225 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY--DN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-------KRVL 225 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC--CC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-------hhHH
Confidence 99999999999999999999998832 12 3577888999999999999999999988432 4678
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhc-cCChhHHhHHHHHHH
Q 000201 897 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 958 (1866)
Q Consensus 897 ~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~-~~~~~vR~~al~~l~ 958 (1866)
|.|++.+.++. .|..++.+||++.. +..+|.+.+.+. +++..++..+...+.
T Consensus 226 ~~Li~~L~~~~---~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKGT---VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCCc---hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 88888887643 67778888776543 356777777775 678888887766554
No 38
>PRK09687 putative lyase; Provisional
Probab=99.29 E-value=3.7e-10 Score=130.88 Aligned_cols=252 Identities=18% Similarity=0.159 Sum_probs=183.3
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
-++.|...|.+++.++|..++..|+.+.. +.+++.+..+++|.++.||..|+++|++++..-. .....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~~~~a 91 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR--CQDNV 91 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--chHHH
Confidence 45667778899999999999999986653 4677788889999999999999999999874211 13456
Q ss_pred HHHHHHh-hCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 776 VPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 776 v~~L~~~-l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
+|.|... ..|++..|| .++..|......+ ......+++.+...+.|.++.||..++.+++.+..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~---~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------- 157 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKN---PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------- 157 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccc---cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----------
Confidence 7777766 678888888 5777776532111 11133456667777888899999998888876532
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 933 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ 933 (1866)
+..++.|...+.|+++.||..|+.+||.+. . .-+...+.|...+.+. +..+|..++.+|+.+ |. ..
T Consensus 158 -~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~---~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~----~~---~~ 223 (280)
T PRK09687 158 -EAAIPLLINLLKDPNGDVRNWAAFALNSNK--Y---DNPDIREAFVAMLQDK-NEEIRIEAIIGLALR----KD---KR 223 (280)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--C---CCHHHHHHHHHHhcCC-ChHHHHHHHHHHHcc----CC---hh
Confidence 236788888999999999999999999881 1 1245677777777544 456899999988774 22 35
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc-CCChHHHHHHHHHHH
Q 000201 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGH 999 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~~VR~~a~~al~ 999 (1866)
.+|.+++.+.+++ +|..++.++|.+.. +..+|.+...+. +++..|+..+.+++.
T Consensus 224 av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 224 VLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 6777888887765 56667777776654 246677777775 778888888877764
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.22 E-value=7.8e-10 Score=150.53 Aligned_cols=273 Identities=19% Similarity=0.184 Sum_probs=202.6
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
.++.|.+.|+|++..+|..|+..|+.+.. +..++.|...|+|+++.||.+|+.+|..+++....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 56778889999999999999999997642 35678888999999999999999999988654332
Q ss_pred HHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
.+.+...+.++++.+| .++..|..... . -.+.+.+.+.|.++.+|..|+..++.+- .
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~----~------~~~~l~~~L~D~d~~VR~~Av~aL~~~~----~-------- 743 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA----G------DAALFAAALGDPDHRVRIEAVRALVSVD----D-------- 743 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc----C------CHHHHHHHhcCCCHHHHHHHHHHHhccc----C--------
Confidence 2456667778888888 46666654211 0 0235667899999999999999888652 2
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
.+.+...+.|+++.||..++.+|+.+...- ...++.|...+.+ .++.+|..++..|+.+.. . ...
T Consensus 744 ---~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----~~~~~~L~~ll~D-~d~~VR~aA~~aLg~~g~----~--~~~ 808 (897)
T PRK13800 744 ---VESVAGAATDENREVRIAVAKGLATLGAGG-----APAGDAVRALTGD-PDPLVRAAALAALAELGC----P--PDD 808 (897)
T ss_pred ---cHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----chhHHHHHHHhcC-CCHHHHHHHHHHHHhcCC----c--chh
Confidence 123567789999999999999999875421 1224556555554 446799999998877532 1 123
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1014 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~ll 1014 (1866)
.+.+...+.++++.||..++.+++.+.. +..++.+...+.|++..||..+..++..+- . -....
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~----~~~a~ 872 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP--G----DPAAR 872 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC--C----CHHHH
Confidence 3457778889999999999999987642 235577888999999999999999987741 1 12245
Q ss_pred HhHhcccCCCchHHHHHHHHHHH
Q 000201 1015 PAVEDGIFNDNWRIRQSSVELLG 1037 (1866)
Q Consensus 1015 p~l~~~l~d~~w~vR~~s~~ll~ 1037 (1866)
+.+...+.|++..||..+.+.|.
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Confidence 66777788899999999888765
No 40
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=8.7e-05 Score=93.94 Aligned_cols=466 Identities=15% Similarity=0.126 Sum_probs=247.3
Q ss_pred hhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcCc----hhc-H-----Hh
Q 000201 589 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRLF----EPY-V-----IQ 657 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~~----~p~-v-----~~ 657 (1866)
++.|+.|-+.|..+-+.. +.++.+.+.+ .+..+..+|++|..=|......-.+.. .|+ + ..
T Consensus 18 ~~~R~~AE~~L~q~~K~p--------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ 89 (1010)
T KOG1991|consen 18 AKERKAAEQQLNQLEKQP--------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAV 89 (1010)
T ss_pred hHHHHHHHHHHHHhhcCC--------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHH
Confidence 677777777777665543 2344444444 333334446655555554443211111 011 0 01
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh----------
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---------- 727 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---------- 727 (1866)
+-..++..+-.....+|..-..++..|...=-+..++.++|.+...|.+++-..-.+|+.+|..+++.-.
T Consensus 90 irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l 169 (1010)
T KOG1991|consen 90 IRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL 169 (1010)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH
Confidence 2233444444447788888899998888876667789999999999999998888899999998886521
Q ss_pred -hhHHhhhcchhHHHhhhccCCChHHHH---HHHHHHHHHHhh-----c-cchhHHhHHHHHHHhhCCCChhHHHHHHHH
Q 000201 728 -QQLSQCLPKIVPKLTEVLTDTHPKVQS---AGQTALQQVGSV-----I-KNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797 (1866)
Q Consensus 728 -~~~~~~l~~iv~~l~~~L~D~~~~VR~---aA~~aL~~l~~~-----i-~~~~i~~lv~~L~~~l~d~~~~vr~al~~L 797 (1866)
..+...+|.|.....+++.+.+-..-. ..++....++-. + .+..+...+..++..++.|-+.-
T Consensus 170 ~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E------- 242 (1010)
T KOG1991|consen 170 GEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE------- 242 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh-------
Confidence 124456677777777788776543322 222222222211 0 11122334444444444432100
Q ss_pred HhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch------------hhhHhhhhHHHHHHh
Q 000201 798 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM------------IPYIGLLLPEVKKVL 865 (1866)
Q Consensus 798 ~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l------------~~~~~~ll~~L~~~l 865 (1866)
-.+ .| |.. .-...=|+.++-|..++..+++..+++... ..|.+.++..+.+.+
T Consensus 243 ----~l~-~d--------~e~--R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l 307 (1010)
T KOG1991|consen 243 ----VLS-LD--------PED--RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKIL 307 (1010)
T ss_pred ----ccc-CC--------hhh--cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 000 001123678888888888888877665321 123444555555544
Q ss_pred cC------CCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHh--------c--c--------cCC-CH----------
Q 000201 866 VD------PIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDA--------L--K--------SDN-SN---------- 909 (1866)
Q Consensus 866 ~d------~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~~--------L--~--------~~~-~~---------- 909 (1866)
.. -.++|-..+...+...+. .. .+.-+-|.+--. + . ++. ++
T Consensus 308 ~~~~~~~yls~rvl~~~l~fl~~~Vs---~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 308 EQWRQQLYLSDRVLYYLLNFLEQCVS---HASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhcc---HHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 31 112332223322222221 11 111111111100 0 0 000 01
Q ss_pred --HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhc------c--CChhHHhHHHHHHHHhhhhhchhhHhHHHH----H
Q 000201 910 --VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS------H--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ----V 975 (1866)
Q Consensus 910 --~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~------~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~----i 975 (1866)
.-+.++...+-.++..-|.+.++.+++.+.+-+. . .++.-++||+.+++.++..+-+. .||-+. +
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~fl 463 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFL 463 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHH
Confidence 1123555667888888889989888887777665 2 26788899999999999766432 122221 2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCC
Q 000201 976 LPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1055 (1866)
Q Consensus 976 l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~ 1055 (1866)
++.++..+.++.--+|..|+ ..++.+-.
T Consensus 464 v~hVfP~f~s~~g~Lrarac--------------------------------------~vl~~~~~-------------- 491 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARAC--------------------------------------WVLSQFSS-------------- 491 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHH--------------------------------------HHHHHHHh--------------
Confidence 22223333344334444333 33333210
Q ss_pred CCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHHHHhh
Q 000201 1056 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPK---TLKEIMPVLMNTLISSL 1131 (1866)
Q Consensus 1056 ~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~---~l~~~l~~l~~~L~~~l 1131 (1866)
.++.... ...+.+.....++ +|.+..||-.|+-++..++.+.+. .+++++|.+++.++...
T Consensus 492 ---~df~d~~------------~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 492 ---IDFKDPN------------NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred ---ccCCChH------------HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 0000000 0011222223333 488888999999999999998773 48889999999988776
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccccc
Q 000201 1132 ASSSSERRQVAGRALGELVRKLGERVL 1158 (1866)
Q Consensus 1132 ~~~~~~~R~~A~~~L~~lv~~~~~~~l 1158 (1866)
++-+.+. -..++..++...++.+.
T Consensus 557 ne~End~---Lt~vme~iV~~fseEls 580 (1010)
T KOG1991|consen 557 NEVENDD---LTNVMEKIVCKFSEELS 580 (1010)
T ss_pred HhcchhH---HHHHHHHHHHHHHHhhc
Confidence 6543332 33456666666666543
No 41
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=99.16 E-value=3.2e-05 Score=96.57 Aligned_cols=215 Identities=22% Similarity=0.247 Sum_probs=154.3
Q ss_pred HHHHHHHHHHhHhhhcc---chhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccch-------------hhhhHH
Q 000201 1326 DVQSLAKEAAETVTLVI---DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLY-------------LVDEAP 1389 (1866)
Q Consensus 1326 ~vr~~a~~~l~~l~~~~---~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~-------------~~~~~~ 1389 (1866)
..++.+...+..+.+.. +.+...++...+++.+++ +.+-..+.+++..+....+.. -..++.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 34555555544444422 223345566666666666 334445666666554322111 124556
Q ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHH
Q 000201 1390 NMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLP 1469 (1866)
Q Consensus 1390 ~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp 1469 (1866)
++++.+...+......++..-..+|+.++++.|++.+- ..+..++|
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vll----------------------------------p~~~~LlP 912 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLL----------------------------------PQFPMLLP 912 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhc----------------------------------cchhhHHH
Confidence 77788877777555667777788888888877764311 23456789
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhcCCC-CCC
Q 000201 1470 IFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFP--WQVKSAILSTLSIIIRKGGIA-LKP 1546 (1866)
Q Consensus 1470 ~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~--~~vr~~al~~L~~L~~~~~~~-~~~ 1546 (1866)
.+++++.-.+..+|..+..++..+.... +.-...|+..+++.++.+-.+..+ ..||..|+++|+.|.+..|.. +.+
T Consensus 913 LLLq~Ls~~D~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 913 LLLQALSMPDVIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred HHHHhcCCCccchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 9999998889999999999999988776 566778889998888887666432 579999999999999988754 789
Q ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000201 1547 FLPQLQTTFIKCLQDSTRTVRSSAALALGKL 1577 (1866)
Q Consensus 1547 ~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L 1577 (1866)
|-|++++.+.++|+|+.+-||..|..+=+..
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999987665
No 42
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.5e-06 Score=103.37 Aligned_cols=658 Identities=17% Similarity=0.185 Sum_probs=327.6
Q ss_pred hhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHH------HHHHhhhcCCc--
Q 000201 293 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEA------AEDIWDRYGYD-- 364 (1866)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~~-- 364 (1866)
.+.+...|..+++||+++|+.++++|+... .+++++ +.+++.+-.+..|...+.+.. .+..|......
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e--~q~~y~--l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLE--GQQNYP--LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhc--cCCCch--HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 456888999999999999999999999875 234443 556666666666665555442 12579764433
Q ss_pred -cC----CCh-hhhhhhcCCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000201 365 -FG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437 (1866)
Q Consensus 365 -~~----~~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 437 (1866)
+. +.+ ..++...-+.-..++..-.+|+.-+.. -+|+.|++++..|.+... ..| ..+-.|+..+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls-----~~D-----~~~~~gVL~t 149 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLS-----SGD-----FNVINGVLVT 149 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcc-----ccc-----hHHHHHHHHH
Confidence 11 223 344555566667899999999988763 357777777777765431 111 1222333333
Q ss_pred HHHhhh----hcCCCC-hHH----------HHHHHHhhh-----cCCCcHHHHHHHHHHHHHHHHhh-----------cc
Q 000201 438 LHSAAD----VLRTKD-LPV----------IMTFLISRA-----LADTNADVRGRMLNAGIMIIDKH-----------GR 486 (1866)
Q Consensus 438 l~~~~~----~~~~~~-~~~----------~~~fli~~~-----l~d~~~~vr~~~~~a~~~~i~~~-----------g~ 486 (1866)
-..+-. .+.++. +.+ -++-|.... ..+.+......+.....-+.+.+ =.
T Consensus 150 ahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE 229 (960)
T KOG1992|consen 150 AHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE 229 (960)
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 333322 222222 111 111111110 12222221111222111111111 13
Q ss_pred cchhhhHHHHHHhhcCCCCChh-------hhhhHHHHHHHHHHHHhhhhccC-CcchHHHHHHHHHhcCCCcH--HHHHH
Q 000201 487 DNVSLLFPIFENYLNKKASDEE-------KYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSE--AVQRA 556 (1866)
Q Consensus 487 ~~~~~ll~~le~~L~~~~~~~~-------~~~~vr~~av~~l~~i~~~l~~~-~~~~~~l~~~l~~~l~~~~~--~v~~~ 556 (1866)
+|.+.-|+.|-++|+...+.-+ .-+.+|..+++...--+..++.. +|.++..+..+...|.+-++ ..-..
T Consensus 230 dnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~L 309 (960)
T KOG1992|consen 230 DNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYL 309 (960)
T ss_pred hhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 5666777777777763222111 11334555555544444334332 23344444444444443322 22222
Q ss_pred HHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHh------hhCcchhhhcchHHHHHHHHhCCCcH
Q 000201 557 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK------GFGISSLKKYGIAATLREGLADRNSA 630 (1866)
Q Consensus 557 ~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~------~~g~~~l~~~~ii~~L~~~i~~~~~~ 630 (1866)
++.++.-+..-... .-+..++..+ +....+..-+. .-..+.+-..+-+.+++.-++..+-.
T Consensus 310 vs~Al~FLt~V~~r-------~~y~~~F~~~------~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvd 376 (960)
T KOG1992|consen 310 VSKALQFLTSVSRR-------PHYAELFEGE------NVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVD 376 (960)
T ss_pred HHHHHHHHHHHHhh-------hhhHhhhcch------HHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcc
Confidence 32222111100000 0011111111 11111111111 11122222334677888888777666
Q ss_pred HHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH-HcCCCCHHH--HHHHHHHHHHHHHhh----------------cHh
Q 000201 631 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQVVAV--REAAECAARAMMSQL----------------SAQ 691 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~-~~~D~~~~V--R~~a~~al~~i~~~l----------------~~~ 691 (1866)
.+|.+|+..++.|++.......+.+...+..++. ..++|+.+- .+.+......++... ..+
T Consensus 377 TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~F 456 (960)
T KOG1992|consen 377 TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDF 456 (960)
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHH
Confidence 7888899989999988765556666655555553 555664433 333444444443321 111
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 769 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-- 769 (1866)
....++|.|...=..+.+-.|.+++.-+..+-...+ ..++..++|.+...|......|-..|+.++..+...-.+
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~ 533 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN 533 (960)
T ss_pred HHHHhhHHhccCccccccchhhcccceeeeecccCC---hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence 225566665553333445555555554332222222 235567888899999998899999999999988754433
Q ss_pred ----------hhHHhHHHHHHHhhCCCC----hhHHHHHHHHHhccccccCCcchhhhHHHHHH----HhhcCC-CHHHH
Q 000201 770 ----------PEIASLVPTLLMGLTDPN----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVH----RGLRER-SAETK 830 (1866)
Q Consensus 770 ----------~~i~~lv~~L~~~l~d~~----~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~----~~l~d~-~~~vr 830 (1866)
|.+..++..|.+.+.-|. ++.-.|+..++.+.- ..--|....+++.+. ...+.+ ++.--
T Consensus 534 ~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~--~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn 611 (960)
T KOG1992|consen 534 AKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQ--SAIIPHAPELLRQLTEIVEEVSKNPSNPQFN 611 (960)
T ss_pred ccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCH--HhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence 222334444555555443 333333333322110 000012222223222 222332 34444
Q ss_pred HHHHHHHHHHhhhcC--CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCC
Q 000201 831 KKAAQIVGNMCSLVT--EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 908 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~--~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~ 908 (1866)
....+.++.+..... ++..+..+...++|.+...+.....+.--.+...++.+++..+.. .++-...++..+.++.-
T Consensus 612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~-ip~~~~~l~~~lLsp~l 690 (960)
T KOG1992|consen 612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGT-IPDSYSPLFPPLLSPNL 690 (960)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHhcCHHH
Confidence 555556665554322 223455677788888888887655555556777888888866552 22212222333333333
Q ss_pred HHHHHHHHHHHHHHHHHh---Chh------HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc-hhhHhHHHHHHHH
Q 000201 909 NVERSGAAQGLSEVLAAL---GTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPA 978 (1866)
Q Consensus 909 ~~~R~~a~~~L~~l~~~~---g~~------~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ 978 (1866)
+ .|.+-+-++-.+..++ |.. .+..++..+-+...++... ..++.++..+...++ ....||+.++...
T Consensus 691 W-~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~l 767 (960)
T KOG1992|consen 691 W-KRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGL 767 (960)
T ss_pred H-hhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHH
Confidence 3 4444333333333322 322 2233333333333333221 235666776666665 4568899999999
Q ss_pred HHhhccCC
Q 000201 979 ILDGLADE 986 (1866)
Q Consensus 979 ll~~l~d~ 986 (1866)
+++.+...
T Consensus 768 lf~Rlqns 775 (960)
T KOG1992|consen 768 LFQRLQNS 775 (960)
T ss_pred HHHHHhcc
Confidence 99888754
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.04 E-value=1.1e-06 Score=111.79 Aligned_cols=395 Identities=16% Similarity=0.162 Sum_probs=246.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-hhcchhH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 739 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~ 739 (1866)
++.++.+.+.+.-+.+.+++..++....+... ..+.+.+..+|.+++..+|..++..|+.++......... .=+.+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 66777777777777888999999998888774 888999999999999999999999999998765442221 1247899
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHH
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 819 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~ 819 (1866)
.+..++.|++..|.+.|..+|..+++.- +.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhC--------c--------------------------chHHHHH
Confidence 9999999999999999999999998632 22222211 0 1123334
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh--hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC-CCCh--hh
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG-EENF--PD 894 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~--~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g-~~~~--~~ 894 (1866)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+.+.-+|..+...+..++..-. -+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777777777777762 2 23333333 378888888889899999999999999998321 1122 24
Q ss_pred HHHHHHHhcccCCCHH-----HHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhh-
Q 000201 895 LVSWLLDALKSDNSNV-----ERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL- 964 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~-----~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~- 964 (1866)
+++.|.+.+.+..... .-.+.+...+.++.. .+. .++.++..+.+...+.++..+..|+.++|.++...
T Consensus 244 i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6677776665433221 111233334555443 222 33556666677778889999999999999998655
Q ss_pred chhh-----HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 965 GVQF-----QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 965 g~~f-----~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
|..+ .+-+..++..+.........++|..+++++..+.........+.++
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~------------------------- 377 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL------------------------- 377 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-------------------------
Confidence 3222 1223334444444444455566666666666655322111100000
Q ss_pred HHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHh
Q 000201 1040 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI 1119 (1866)
Q Consensus 1040 l~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~ 1119 (1866)
...+...+.++...... .++...+.+-+++|.++..+|..++.. ||..+.+
T Consensus 378 -------------------------~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i 428 (503)
T PF10508_consen 378 -------------------------SITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREI 428 (503)
T ss_pred -------------------------HHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 01112223333222221 222234566688999999999999964 7776664
Q ss_pred H--HHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1120 M--PVLMNTLISSLASSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1120 l--~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv 1150 (1866)
. |.++..++.+-.+.+.+.+..=..++..++
T Consensus 429 ~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 429 CSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 3 556666655544555555444444444444
No 44
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=0.00015 Score=89.55 Aligned_cols=260 Identities=15% Similarity=0.154 Sum_probs=155.8
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHH--HHHHHHHHHHhhccchhH------HhHHHHHHHh
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQS--AGQTALQQVGSVIKNPEI------ASLVPTLLMG 782 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~--aA~~aL~~l~~~i~~~~i------~~lv~~L~~~ 782 (1866)
.|..-|+.+.-.+..-++.+...+++++...+.+|.+..+..|. .++.|+.-+..+.+.+.. +.++..+.+.
T Consensus 263 lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~ 342 (960)
T KOG1992|consen 263 LKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEK 342 (960)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHh
Confidence 34555565555555567777888888888888888876655543 455566666555544432 3455555555
Q ss_pred hCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHhhhcCCCcchhhhHhhhhHHH
Q 000201 783 LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV 861 (1866)
Q Consensus 783 l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~v-r~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L 861 (1866)
..=|+-..|..-+.+- -..-+..+.+-++..+.++ |+.|++.+..++..... .+.+.....+..+
T Consensus 343 VvlpN~~lR~eDeElF------------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~--~vt~v~~~~v~~~ 408 (960)
T KOG1992|consen 343 VVLPNLILREEDEELF------------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG--QVTGVFSSEVQRL 408 (960)
T ss_pred hcccccccchhhHHHh------------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHH
Confidence 5445443442222221 1123455666676666665 56788999999987632 2333333344443
Q ss_pred HH-HhcC--CCHhHHHHHHHHHHHHHhhcCCC---------------Ch-hhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 862 KK-VLVD--PIPEVRSVAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 862 ~~-~l~d--~~~~vR~~a~~aL~~l~~~~g~~---------------~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
.. ...+ .+|.-+..+...+.+++...+.. +| ..++|.|.+.=.. ..+..+..++.-+-..
T Consensus 409 l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn-~~pilka~aIKy~~~F 487 (960)
T KOG1992|consen 409 LDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN-EFPILKADAIKYIYTF 487 (960)
T ss_pred HHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc-cccchhhcccceeeee
Confidence 33 2333 46888888888888888764321 11 1233433321001 1122333444333334
Q ss_pred HHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch---------hhHhHHHHHHHHHHhhccC
Q 000201 923 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLAD 985 (1866)
Q Consensus 923 ~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~---------~f~~~l~~il~~ll~~l~d 985 (1866)
-+.+|...+-.++|.++..+..+.+-|...+..++..+....++ .+.||+..++..+++.++-
T Consensus 488 R~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~ 559 (960)
T KOG1992|consen 488 RNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSL 559 (960)
T ss_pred cccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccC
Confidence 45677778888999999999999999999999988877655443 5567888887777776653
No 45
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.02 E-value=3.6e-08 Score=107.89 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=211.8
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhh---hCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 648 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~---~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~ 648 (1866)
+...++++.+.|++ ++.+....|.+-+-.++.. .++..+...+++|.+.+.+.+.....-.-.|..++..++.+..
T Consensus 69 ~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 34455777777764 4456666777766665552 2234444457888888887544434455568888889988766
Q ss_pred cCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---hH-HhHHHHHHhhcCCCCh--hhHHHHHHHHHH
Q 000201 649 RLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGA 721 (1866)
Q Consensus 649 ~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~v-~~llp~L~~~L~~~~w--~~r~~a~~~L~~ 721 (1866)
..-.-.+ ...+|.+..++.+++..||+.+.||++.|+..-+.. -+ -..+.+++..+.++.. ..-+.+.+.|++
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 4333333 257899999999999999999999999998754331 12 3456667766665544 445668899999
Q ss_pred HHhhC-hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH-----hHHHHHHHhhCCCChhHH-HHH
Q 000201 722 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-----SLVPTLLMGLTDPNDHTK-YSL 794 (1866)
Q Consensus 722 l~~~~-~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~-----~lv~~L~~~l~d~~~~vr-~al 794 (1866)
++.+. |.--...+...+|.|.+++...+++|-.-||||+..+...- ++.++ .+.+.|.+++.+|+..+. -++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 99884 32233455677888999999889999999999999887643 33333 345578888888877665 466
Q ss_pred HHHHhccccccCCcc--hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh-hhhHHHHHHhcCCCHh
Q 000201 795 DILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPE 871 (1866)
Q Consensus 795 ~~L~~~~~~~~~~~~--~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~-~ll~~L~~~l~d~~~~ 871 (1866)
..+............ .-.-.++.+...|.++...+|+.+|..++|+.. +..+.+...++ .++|.|.+++......
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k 384 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYK 384 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 666552111111100 112345666666777777999999999999876 44344443333 5889999999998999
Q ss_pred HHHHHHHHHHHHHh
Q 000201 872 VRSVAARAIGSLIR 885 (1866)
Q Consensus 872 vR~~a~~aL~~l~~ 885 (1866)
+|+.|+.++.....
T Consensus 385 ~kKEACWAisNats 398 (526)
T COG5064 385 IKKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988765
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.4e-08 Score=109.14 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=203.4
Q ss_pred HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--
Q 000201 694 KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-- 769 (1866)
..++|.+++.|++ ..---+..|.++|.+++.+...+..... ...+|.++++|.+++..||..++|||+.++.....
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 4578888888854 4445677899999999999877643222 26789999999999999999999999999853321
Q ss_pred hhH--HhHHHHHHHhhCCCCh---hHHHHHHHHHhc--cccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 770 PEI--ASLVPTLLMGLTDPND---HTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 770 ~~i--~~lv~~L~~~l~d~~~---~vr~al~~L~~~--~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
.++ -..+..++..+..... -+|.+--+|... .-.+..+.......+|+|.+++...++++-..||.+++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111 1233344444433322 245444444442 112233445667789999999999999999999999999876
Q ss_pred hcCCCcchhhhHh-hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC----hhhHHHHHHHhcccCCCHHHHHHHHH
Q 000201 843 LVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN----FPDLVSWLLDALKSDNSNVERSGAAQ 917 (1866)
Q Consensus 843 ~l~~~~~l~~~~~-~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~----~~~l~~~L~~~L~~~~~~~~R~~a~~ 917 (1866)
. ..+.+...++ .+.+.|.++|.+++..++.-|.+.+|.++....... --..++.+...|.+.++ ..|..+|+
T Consensus 273 g--~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEaCW 349 (526)
T COG5064 273 G--PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE-NIRKEACW 349 (526)
T ss_pred C--cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh-hhhhhhhe
Confidence 3 2222222332 367789999999999999999999999987544321 11345555555555544 58999999
Q ss_pred HHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc--hhhHhHH--HHHHHHHHhhccCCChH
Q 000201 918 GLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYL--QQVLPAILDGLADENES 989 (1866)
Q Consensus 918 ~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g--~~f~~~l--~~il~~ll~~l~d~~~~ 989 (1866)
.++.+..+-... .+ ..++|.++..+...+...|..+++++.......- ++.-.|+ ..++.++..++.-.+..
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNk 429 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNK 429 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCcc
Confidence 999876644333 11 3678999999988899999999888876554321 2333444 23555555555544444
Q ss_pred HHHHHHHHHHHHHH
Q 000201 990 VRDAALGAGHVLVE 1003 (1866)
Q Consensus 990 VR~~a~~al~~i~~ 1003 (1866)
+-+.+++++..+.+
T Consensus 430 iiev~LD~~eniLk 443 (526)
T COG5064 430 IIEVALDAIENILK 443 (526)
T ss_pred chhhhHHHHHHHHh
Confidence 55555666555543
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.8e-05 Score=93.15 Aligned_cols=231 Identities=13% Similarity=0.181 Sum_probs=169.1
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 734 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l 734 (1866)
...+-+-++.+++...+.||+.|.-.+-.++-.++ +.+...+|.|.+.|+|+++.+..+|+..+..++...|+...
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 34677788889999999999999998888877664 56788999999999999999999999999999998887643
Q ss_pred cchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-----chhH-HhHHHHHHHhhCCCChh-H-HHHHHHHHhcccccc-
Q 000201 735 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----NPEI-ASLVPTLLMGLTDPNDH-T-KYSLDILLQTTFVNT- 805 (1866)
Q Consensus 735 ~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-----~~~i-~~lv~~L~~~l~d~~~~-v-r~al~~L~~~~~~~~- 805 (1866)
++-|.+.+++.++.. .|.|-.+.+.++ +|.+ ..++|.+.+.+...... + =+|+.++++......
T Consensus 218 -~LAP~ffkllttSsN------NWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 218 -QLAPLFYKLLVTSSN------NWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred -cccHHHHHHHhccCC------CeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 556777777765432 233333333332 3444 67888888887655421 2 267777776433332
Q ss_pred -CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 806 -VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 806 -~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
.+..+....+.-|.-.+.|.+++.|.-++-+++.++. +.++.+..+. ..+..+|.|.++.+|..|...+-.++
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHh
Confidence 4445666777778888899999999999999999887 4544444443 45667889999999988888777766
Q ss_pred hhcCCCChhhHHHHHHHhccc
Q 000201 885 RGMGEENFPDLVSWLLDALKS 905 (1866)
Q Consensus 885 ~~~g~~~~~~l~~~L~~~L~~ 905 (1866)
. ++.+.+++..|+..+..
T Consensus 365 s---kkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 365 S---KKNLMEIVKTLMKHVEK 382 (877)
T ss_pred h---hhhHHHHHHHHHHHHHh
Confidence 5 45566777777776543
No 48
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.89 E-value=0.0011 Score=83.59 Aligned_cols=212 Identities=19% Similarity=0.205 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------cC----------C-hh
Q 000201 1524 QVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-------ST----------R-VD 1585 (1866)
Q Consensus 1524 ~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-------~~----------~-~~ 1585 (1866)
+.+..++..+..+.+..-..-.|---.+-..|+.+|+++ ++-..+++++.-++.- .+ | +.
T Consensus 789 dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~ 866 (1030)
T KOG1967|consen 789 DLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC 866 (1030)
T ss_pred chhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH
Confidence 445556666655544332222233344555566666653 3445566666555321 01 1 34
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcC---hh
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCME---DG 1662 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~---~~ 1662 (1866)
.++|.++..+++.....+...+.+|..++.+.+..+.-+..+.++++|.+.+.-+|-.+|.....++..+....+ ++
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 567888888887778899999999999999998876668899999999999999999999999999988765443 24
Q ss_pred HHHHHHHHHHhccCCCC---cchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1663 QLADLLQELLNLASSPS---WAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1663 ~~~~~l~~ll~~~~~~~---~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
++..+++.++....+.+ ..+|..+..+|+++.+.-|...+. ++.+.++..+...+.|++--+|+-|+.+-+.+-.
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 57788888887655555 567888899999999988887654 4788999999999999999999999988765543
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.5e-05 Score=95.49 Aligned_cols=462 Identities=16% Similarity=0.137 Sum_probs=270.3
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH-hHHHH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPL 661 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~-~llp~ 661 (1866)
|+++++......|.+-+..++.. |.+ ...++|.+.+++..++. ..+... +-+|...... .|-+. --+..
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~d---vS~~Fp~VVKNVaskn~-EVKkLV---yvYLlrYAEe--qpdLALLSInt 112 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKD---VSLLFPAVVKNVASKNI-EVKKLV---YVYLLRYAEE--QPDLALLSINT 112 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCc---HHHHHHHHHHHhhccCH-HHHHHH---HHHHHHHhhc--CCCceeeeHHH
Confidence 34455445666666665544432 222 23578888888877554 444322 2233332221 11111 12345
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
+-+.++|+++-+|-.|..++..|-- +--.+.++-.+.+...|.+..+|+.|+.+|-.+....+++-. +++..+
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~----qL~e~I 185 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD----QLEEVI 185 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH----HHHHHH
Confidence 6678899999999988887766521 112244555556677899999999999999998887776643 556667
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChh---------HHHHHHHHHhc------------
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH---------TKYSLDILLQT------------ 800 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~---------vr~al~~L~~~------------ 800 (1866)
-.+|.|..|.|-.+|+.|...++..-- .-+..-...+++.+.|-++- +|.|-..+..-
T Consensus 186 ~~LLaD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 186 KKLLADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred HHHhcCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 779999999999999999887763110 01122222233333322210 11111111110
Q ss_pred ------cc----cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 801 ------TF----VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 801 ------~~----~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
.. .++...+.+..++.....++.++++.|-..+++++..++... + ...+...|..+|.. +.
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~----~~~i~kaLvrLLrs-~~ 335 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----Q----VTKIAKALVRLLRS-NR 335 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----H----HHHHHHHHHHHHhc-CC
Confidence 00 111223456667777777888899999999998888776521 1 23456666666654 56
Q ss_pred hHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhH
Q 000201 871 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV 949 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~-~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~v 949 (1866)
.+|.....++..++..... . +.|++....- +.....+..--++.|+.++..- ....+++.+.....+.+..+
T Consensus 336 ~vqyvvL~nIa~~s~~~~~-l---F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es---ni~~ILrE~q~YI~s~d~~f 408 (968)
T KOG1060|consen 336 EVQYVVLQNIATISIKRPT-L---FEPHLKSFFVRSSDPTQVKILKLEILSNLANES---NISEILRELQTYIKSSDRSF 408 (968)
T ss_pred cchhhhHHHHHHHHhcchh-h---hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCchhH
Confidence 8899999999998875432 2 3344433322 2223333334445556555433 34567777788888887778
Q ss_pred HhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCC-chHH
Q 000201 950 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRI 1028 (1866)
Q Consensus 950 R~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~-~w~v 1028 (1866)
-..++.++|..+...+. .-+.++..++..++..++.|-..+.-.++.+++.-+.+... ++-.+...++.. -..-
T Consensus 409 aa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~-ii~~La~lldti~vp~A 483 (968)
T KOG1060|consen 409 AAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE-ILFQLARLLDTILVPAA 483 (968)
T ss_pred HHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH-HHHHHHHHhhhhhhhhh
Confidence 78888889888887775 44567777888888778888777877788777654433211 222222222111 1224
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000201 1029 RQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1108 (1866)
Q Consensus 1029 R~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l 1108 (1866)
|...++++|+....++. .-.+++..+.....|+...||-..+.+-..+
T Consensus 484 RA~IiWLige~~e~vpr--------------------------------i~PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 484 RAGIIWLIGEYCEIVPR--------------------------------IAPDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred hceeeeeehhhhhhcch--------------------------------hchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 55555666655433221 1123444555556677777877777765555
Q ss_pred hhcChhh
Q 000201 1109 VANTPKT 1115 (1866)
Q Consensus 1109 ~~~~p~~ 1115 (1866)
.......
T Consensus 532 yl~~~~~ 538 (968)
T KOG1060|consen 532 YLTNIDQ 538 (968)
T ss_pred eEechhh
Confidence 4433433
No 50
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.82 E-value=1e-07 Score=109.27 Aligned_cols=183 Identities=26% Similarity=0.327 Sum_probs=131.8
Q ss_pred HcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH-------HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH
Q 000201 584 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT-------LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 584 ~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~-------L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~ 656 (1866)
..+.+|..|..|...|..++.+...... ...+++. +...+.+.. ...-..|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4677899999999999999987611111 1223333 333333322 234456889999999999999999999
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh---hhHHh-
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ- 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---~~~~~- 732 (1866)
.++|.++..++|++..+|++|..++..++...+ ..-+.+++.+..++.+++|.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 999999999999999999999999999999877 1113347788889999999999999999999998877 33433
Q ss_pred -hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 733 -CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 733 -~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
.++.+.+.+..++.|++++||.+|-.++..+.+.+++
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3578999999999999999999999999999877654
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.77 E-value=3.9e-06 Score=106.74 Aligned_cols=347 Identities=22% Similarity=0.244 Sum_probs=228.9
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc-hH
Q 000201 1471 FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPF-LP 1549 (1866)
Q Consensus 1471 l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~-lp 1549 (1866)
+...+.+.+.++-..++..|..+.....+..+ .+.+.+.|.+.+.. .++.||..++..++.+.+.-....... -+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 56677777777778888889998887655554 45566667888876 478999999999988775433211111 15
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhH-----HHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHH
Q 000201 1550 QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPL-----VGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSA 1624 (1866)
Q Consensus 1550 ~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~-----l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~ 1624 (1866)
.+.+.++.++.+++..|...|+.+|..+....+..+.+ +..|...+..++..+|..++..+..+........ .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~--~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA--E 196 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 68889999999999999999999999998766655555 6667777766677889888888877765443322 2
Q ss_pred HHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh-H-HH--HHHHHHHhccCC--CCcchh----hhHHHHHHH
Q 000201 1625 VKI--RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG-Q-LA--DLLQELLNLASS--PSWAAR----HGSVLVFAT 1692 (1866)
Q Consensus 1625 ~~~--~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~-~-~~--~~l~~ll~~~~~--~~~~~r----~~~~~~L~~ 1692 (1866)
+.. -+++.+...+.++|--++..+.+++..++. .+.. . +. .+++.+.+.... .+...+ -+.+..+..
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 222 367777777888777889999999999997 3321 1 11 133333332211 111011 112223344
Q ss_pred HHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcC---CCChhhHHHHHHHHHhhcCCCCHHH
Q 000201 1693 FLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG---PANTTVVVDILASVVSALHDDSSEV 1769 (1866)
Q Consensus 1693 ~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~---~~~~~~~~~~l~~l~~~l~~~~~~v 1769 (1866)
+....|..++ ...+.+...+.....+.++..+..|+.++|.+........ ..........+..+-........++
T Consensus 276 la~~~~~~v~--~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 276 LARVSPQEVL--ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred HHhcChHHHH--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 4444555543 2446677788888899999999999999998764322110 0011234556677777777888999
Q ss_pred HHHHHHHHHHHHhhCcchhhhhHhhHHHH-------------HHhhhccCcchhhhhHHHHHHHhhcccc
Q 000201 1770 RRRALSALKSVAKANPSAIMVHVALFGPA-------------LAECLKDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1770 R~~a~~~l~~~a~~~~~~~~~~l~~l~p~-------------l~~~~~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
|..++.++..+-...++.-...+..+... +.+.++.+=..+|.|+.+-+.++..=+-
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 99999999999765544222222233333 3344455557799999998888875443
No 52
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=2.4e-05 Score=95.76 Aligned_cols=448 Identities=17% Similarity=0.153 Sum_probs=268.6
Q ss_pred HHHhhcCCCChhhHHHHHHHH-HHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLL-GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L-~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
.|...|++..-+.+..|+.-| +-|+.+.. . ..++|.+++-....+++|++-.---|-++++.-+|-.+ --+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc--H----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 455666777777777777654 44555432 2 35677777778888999999999888888875433211 1257
Q ss_pred HHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHH----HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 778 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI----VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~----L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
++.+.+.|||.-+| .|+..+.++. +..+.|+ +.+...|.++.||+.|+-++-.+... ++ .
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR---------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL--d~----e 176 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR---------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL--DP----E 176 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--Ch----h
Confidence 88999999999999 5888887632 2334444 45667889999999999999998873 21 2
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh------
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL------ 926 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~------ 926 (1866)
+.+++...+..+|.|..+-|--.|+.++..++-.-= +.+..-...+.+.+.+-+++ -+.-.+..|...++.-
T Consensus 177 ~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerl-dLIHknyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 177 QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERL-DLIHKNYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTV 254 (968)
T ss_pred hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHH-HHhhHHHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCccc
Confidence 445899999999999999998888888877664100 01112222333444333333 1222233333333211
Q ss_pred --------C--------------h----hHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHH
Q 000201 927 --------G--------------T----VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 980 (1866)
Q Consensus 927 --------g--------------~----~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll 980 (1866)
| + .-.+.++......+.+.++.|--++.+++..++... -...|..+++
T Consensus 255 ~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLv 328 (968)
T KOG1060|consen 255 VDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALV 328 (968)
T ss_pred cccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHH
Confidence 0 0 012234444444566778888777888877776543 2344666677
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCC--CchHHHHHHHHHHHHHHHHhcCCcccccccCCCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1058 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d--~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed 1058 (1866)
..+.. +..++...+..+..+...- -..+.|.+.+..-- +...++.--++.+..++..
T Consensus 329 rLLrs-~~~vqyvvL~nIa~~s~~~----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~e---------------- 387 (968)
T KOG1060|consen 329 RLLRS-NREVQYVVLQNIATISIKR----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANE---------------- 387 (968)
T ss_pred HHHhc-CCcchhhhHHHHHHHHhcc----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhh----------------
Confidence 76543 3556666666655554321 12355666554311 1122333333444443311
Q ss_pred CCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHH
Q 000201 1059 EGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1138 (1866)
Q Consensus 1059 ~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~ 1138 (1866)
.....++..+-....+.+..+-.+|++.++..+.+.. .+-++++..|+..+.+.++.+
T Consensus 388 ------------------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~V 445 (968)
T KOG1060|consen 388 ------------------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELV 445 (968)
T ss_pred ------------------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchh
Confidence 1112334444334445445677888888888776544 345677888888888888888
Q ss_pred HHHHHHHHHHHHHHhccccccchHHHHhcccCC-CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHH
Q 000201 1139 RQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1217 (1866)
Q Consensus 1139 R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~ 1217 (1866)
-..+...+..+++.-+.... .++..+.+.+.. ..+..|.+.+|.+++..... ....+.++..+.+.+.+..++
T Consensus 446 v~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ARA~IiWLige~~e~v-----pri~PDVLR~laksFs~E~~e 519 (968)
T KOG1060|consen 446 VAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPAARAGIIWLIGEYCEIV-----PRIAPDVLRKLAKSFSDEGDE 519 (968)
T ss_pred HHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc-----chhchHHHHHHHHhhccccch
Confidence 88888888888876443321 233333333332 24556777777777654322 223355556666677888888
Q ss_pred HHHHHHHH
Q 000201 1218 VRESAGLA 1225 (1866)
Q Consensus 1218 vr~~A~~a 1225 (1866)
|+-.....
T Consensus 520 vKlQILnL 527 (968)
T KOG1060|consen 520 VKLQILNL 527 (968)
T ss_pred hhHHHHHh
Confidence 88765543
No 53
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-06 Score=111.59 Aligned_cols=295 Identities=18% Similarity=0.194 Sum_probs=193.5
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
+++.+...++.-+....+..|+..+..++..... +..+..++|-++.++.|+...||-+|..++..+...+.+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~--- 497 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP--- 497 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC---
Confidence 3444444444434445556666666666665543 44566777777777778888888777777776655332210
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+..-.-.-.-|+|.|..++.| ....||-+-+.+|+.+++... .+..
T Consensus 498 -------------------------------~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 498 -------------------------------PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -------------------------------cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 111011112467777788888 667788888888888886432 1222
Q ss_pred HHHHHHH--hhCCCChhHH------HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000201 775 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846 (1866)
Q Consensus 775 lv~~L~~--~l~d~~~~vr------~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~ 846 (1866)
+...+-. .+++|+.... .-+..| ...+-..+..++.|..+-||+...+.+..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2345543110 011111 112233445567788889999999999999987766
Q ss_pred CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 847 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 847 ~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
.+ --+.|++.|...|+|.+|..|.+-+..|..++-.+|.... +.++|.|.+.|.+.++. +-..++.++..+++.
T Consensus 612 ~k----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EK----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKL 686 (1431)
T ss_pred cc----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHh
Confidence 32 2356889999999999999999988888888888887633 45788888888766654 777888888888764
Q ss_pred hC--hhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 926 LG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 926 ~g--~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
-- ..+..+++..+.-.+.+++.-+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 32 235567777777788899999999999999998888774
No 54
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.75 E-value=0.00037 Score=89.79 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=106.4
Q ss_pred HHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCch-hHHHHHH
Q 000201 1292 HALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQA-SIRRSSA 1370 (1866)
Q Consensus 1292 ~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~-~vR~~a~ 1370 (1866)
..+.+++-.+|..+.+ +-+.+|.++.++...+..+|..+..|++.+......+....+++.++.++.+.+. ..|+.+.
T Consensus 798 ~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~ 876 (1549)
T KOG0392|consen 798 EVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGAD 876 (1549)
T ss_pred HHHHHHHHhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHH
Confidence 3445555556777777 7778899999999999999999999999998866556667777777777776544 4466777
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1371 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1371 ~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
..+..+.......+.+|.+-++..|+..+.|....||.+|..++..++...+-
T Consensus 877 e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 877 ELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred HHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccccc
Confidence 77888888778888899999999999999999999999999999999986654
No 55
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.75 E-value=0.0027 Score=79.96 Aligned_cols=253 Identities=23% Similarity=0.173 Sum_probs=157.6
Q ss_pred CchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchh--------cHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDNQASIRRSSAYLIGY 1375 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~ 1375 (1866)
-+.+.++.|+..++....+.+.++-....+++..++. ++.+ -.+.++..+... .++|.+-..+-.++..
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~e 599 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEE 599 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHH
Confidence 3667788888888888877777887778888877776 2221 123333333333 3446665566666666
Q ss_pred HHhhccchhhhhHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCC
Q 000201 1376 FYKNSKLYLVDEAPNMISTLIVLLSDSD----STTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGG 1451 (1866)
Q Consensus 1376 l~~~~~~~~~~~~~~il~~L~~ll~d~~----~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~ 1451 (1866)
++. ....+.++....++.++..++-++ .....-|...|..++++.+.+.-..++
T Consensus 600 l~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~--------------------- 657 (1005)
T KOG2274|consen 600 LLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI--------------------- 657 (1005)
T ss_pred HHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH---------------------
Confidence 654 233455666777888888776544 455666777777777766654211111
Q ss_pred ccccCCcCCCCCccccHHHHHHh-hccCCHHHHHHHHHHHHHHHhhcChhhhhhh------hhhhhHHHHHHhcCCCCHH
Q 000201 1452 PILIPGFCLPKALQPLLPIFLQG-LISGSAELREQAALGLGELIEVTSEQSLKEF------VIPITGPLIRIIGDRFPWQ 1524 (1866)
Q Consensus 1452 ~~~l~g~~~~~~l~~ilp~l~~~-L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~------v~~i~~~Li~~l~~~~~~~ 1524 (1866)
...+|.+.++ +.+++.+.-+.+-+|+..++..+.++-..-+ +-.++..+-+.|..+.+..
T Consensus 658 -------------~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds 724 (1005)
T KOG2274|consen 658 -------------CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDS 724 (1005)
T ss_pred -------------HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchh
Confidence 1123444433 4456677778888899888877522211111 1234455556665543333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc
Q 000201 1525 VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ 1596 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~ 1596 (1866)
.-..+-..+..|+.+.|..+.|-+.++++.+++-+... ...+-..-..++++|.. +.+++++..|.+...
T Consensus 725 ~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~--t~~~~~l~FL~Slp~ 795 (1005)
T KOG2274|consen 725 AAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH--TDLDQLLNFLSSLPG 795 (1005)
T ss_pred HHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh--CCHHHHHHHHHhCCC
Confidence 33344455667778888888899999999888877665 55666666777777644 778899988888443
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.74 E-value=2.3e-07 Score=106.36 Aligned_cols=200 Identities=25% Similarity=0.350 Sum_probs=139.5
Q ss_pred hHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCC
Q 000201 1013 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1092 (1866)
Q Consensus 1013 llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D 1092 (1866)
+.+.++....+.+|..|..+++-+..++..-. ..+ ....+.+.+ ..++..+.....|
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~-----------~~~-------~~~~~~~~l-----~~~~~~i~~~l~d 64 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNA-----------PED-------FPPDFVECL-----RQLLDAIIKQLSD 64 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----------------------HHHHHHH-----H---HHHHH-S-H
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCC-----------ccc-------cHHHHHHHH-----HHhHHHHHHHHhh
Confidence 44445444567899999999999988875420 000 001122222 2344566667788
Q ss_pred CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccch-HHHHhcccCC
Q 000201 1093 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLKD 1171 (1866)
Q Consensus 1093 ~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~l-lp~L~~~L~d 1171 (1866)
....|-..|+.+++.++...+..+.++++.+++.+++.++++...+|..|..+|..++...+ ..+.+ .+.+..+..+
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~ 142 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKS 142 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhC
Confidence 88889999999999999998888999999999999999999999999999999999998766 23455 6777788889
Q ss_pred CCccchhhHHHHHHHHHHhhc--hhhHH--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh
Q 000201 1172 PSASRRQGVCIGLSEVMASAG--KSQLL--SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 1237 (1866)
Q Consensus 1172 ~~~~vr~~a~~~L~~li~~~~--~~~l~--~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~ 1237 (1866)
.++.+|..++.++..++...+ ...+. ..++.+.+.+.+.+.|.+++||+.|..++..++...|..+
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999999999988877 23332 2458899999999999999999999999999988877643
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.6e-05 Score=93.33 Aligned_cols=428 Identities=16% Similarity=0.177 Sum_probs=239.5
Q ss_pred HhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH
Q 000201 1309 LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA 1388 (1866)
Q Consensus 1309 l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 1388 (1866)
+--+.+.+.+-+++.+.-+...|+.+++.++ +.+-.+.+.|.+.+.+++.++.+|.-|+.|...+....+.-..
T Consensus 105 llLltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e--- 178 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE--- 178 (866)
T ss_pred HHHHHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH---
Confidence 3345566666777778888888888888775 4566788889999999999999999999999988876654433
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc------chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCC
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK------EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPK 1462 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~------~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~ 1462 (1866)
.++.....++.+.+..|..++...+..+++..+. +..+.++..+++..... ....+.+.|.+
T Consensus 179 -~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~--------yspeydv~gi~--- 246 (866)
T KOG1062|consen 179 -HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSG--------YSPEYDVHGIS--- 246 (866)
T ss_pred -HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCccCccCCC---
Confidence 4455556677888888887777777777776442 34445555555443321 11114455544
Q ss_pred CccccHHH----HHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhh-HHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 000201 1463 ALQPLLPI----FLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPIT-GPLIRIIGDRFPWQVKSAILSTLSIII 1537 (1866)
Q Consensus 1463 ~l~~ilp~----l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~-~~Li~~l~~~~~~~vr~~al~~L~~L~ 1537 (1866)
.|++.+ ++..+..++++..+.-...|+.++..+... +..=..|+ ..+..+..=+.+...|..|.++||.++
T Consensus 247 --dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL 322 (866)
T KOG1062|consen 247 --DPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL 322 (866)
T ss_pred --chHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 233332 334556667766666677778887766311 11101111 111111111234556666666666655
Q ss_pred HhcCCCCC-----------C----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhH
Q 000201 1538 RKGGIALK-----------P----FLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGI 1602 (1866)
Q Consensus 1538 ~~~~~~~~-----------~----~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~v 1602 (1866)
..-...++ + -+.+=..+++.||+|++..+|.+|...+-.|.. ..++..++.+|+.-+...+.+.
T Consensus 323 ~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~eLl~fL~~~d~~~ 401 (866)
T KOG1062|consen 323 LNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVKELLEFLESSDEDF 401 (866)
T ss_pred cCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHhccHHH
Confidence 42221111 1 112335589999999999999999998877754 4678899999999998778888
Q ss_pred HHHHHHHHHHHHHhc------------------CccccHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcChhH
Q 000201 1603 REAILTALKGVLKHA------------------GKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQ 1663 (1866)
Q Consensus 1603 r~~~l~aL~~vi~~~------------------~~~l~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~l~~L~~~~~~~~ 1663 (1866)
+..+..-+.++..+. |.-+.+.....++.++.+... .++..+++.+..+..........+.
T Consensus 402 k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~ 481 (866)
T KOG1062|consen 402 KADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEP 481 (866)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 777766666655544 444444444444444444322 1223333333322222111111111
Q ss_pred HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhhhh
Q 000201 1664 LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQI 1741 (1866)
Q Consensus 1664 ~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~--~~~~r~~a~~alg~ll~~~~ 1741 (1866)
+ -....|.- -...-+.+.-..+..|..+.. ..++..+...+.+. +..++..|+.|+-++-....
T Consensus 482 l----~qVa~W~I------GEYGdlll~~~~~~~p~~vte----sdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 482 L----LQVASWCI------GEYGDLLLDGANEEEPIKVTE----SDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred H----HHHHHHHh------hhhhHHhhcCccccCCCcCCH----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 1 11112211 111111222222233433322 33444444333322 36788888888888766543
Q ss_pred hcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000201 1742 QSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 1780 (1866)
Q Consensus 1742 ~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~ 1780 (1866)
. +.+.+..++..+.. +-+.+.++-|..-=..+
T Consensus 548 s----~~~ri~~lI~~~~~---s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 548 S----SSERIKQLISSYKS---SLDTELQQRAVEYNALF 579 (866)
T ss_pred c----cHHHHHHHHHHhcc---cccHHHHHHHHHHHHHH
Confidence 2 22344555554443 45778888776543333
No 58
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.6e-06 Score=94.63 Aligned_cols=341 Identities=16% Similarity=0.121 Sum_probs=217.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-Hh--HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH-hh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL--VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~--llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~-~~ 733 (1866)
....++..+...+..+..++.++++.++-+....++ .. =+..++..+..+.-.+|..++.++.+++........ .+
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhh
Confidence 444555567788888999999999988876665543 11 123344444455556677777777777765333221 12
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH---HhHHHHHHHhhCCCChhHHH-HHHHHHhccc---cccC
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLTDPNDHTKY-SLDILLQTTF---VNTV 806 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i---~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~---~~~~ 806 (1866)
. .-+..+.++-+..+..||..+..+|-.+...-.+... ..-+|.|...+...+..+++ |...+..... ....
T Consensus 166 s-GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 S-GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred c-cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 2 3333456677778899999999999988765444321 45688888888877777773 4444433211 1111
Q ss_pred CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 807 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 807 ~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
-...-+.++|.+...+.+.+.+++..|.-++++++.- ..-...-.-..-+|.+.++++++.-..-...+.|+..++-.
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1223456899999999999999999999999999862 21111111123568888888887766656667777666543
Q ss_pred cCCCC---hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHhHHHHHHHH
Q 000201 887 MGEEN---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGYLTLFKY 959 (1866)
Q Consensus 887 ~g~~~---~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~ 959 (1866)
-+.+. -..++..|...|...++...+..+...|-.++...... .. ..-+|.++..+.+..-.+++..-.||..
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 33221 12345556666665555556777777777766543322 11 2456888888888777777766666666
Q ss_pred hhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 960 LPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 960 L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
++-.- .+..++ ..++|.++....+.+++||.++..|+..+..
T Consensus 403 Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 55332 222233 3578888888889999999999888776554
No 59
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.66 E-value=0.0018 Score=80.92 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-HhccCChhhHHHHHHHHhc
Q 000201 1519 DRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL-SALSTRVDPLVGDLLSSLQ 1596 (1866)
Q Consensus 1519 ~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L-~~~~~~~~~~l~~L~~~l~ 1596 (1866)
..+++.+|..+.-+|+.++-.-+.-. ..++|.|++-|... ...+|+...-++|.+ +.+...++.|+|.+-..+.
T Consensus 941 ~~~~~~vra~~vvTlakmcLah~~La----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 941 AMFSDKVRAVGVVTLAKMCLAHDRLA----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLC 1016 (1529)
T ss_pred cccchHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhc
Confidence 33577889999999998876655433 34566677777665 568999999999999 4566778999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHhcCccccHHHHHHH-HHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh
Q 000201 1597 VSDAGIREAILTALKGVLKHAGKSVSSAVKIRV-YSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661 (1866)
Q Consensus 1597 ~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i-~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~ 1661 (1866)
++++-+|.-.+--|..+++..-- .....+ +.++.. +-+.++.+|+-+-.|++.+...-.+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~v----Kw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIV----KWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhh----hcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999888888864321 122222 233333 4567899999999999998765443
No 60
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.62 E-value=8e-07 Score=112.81 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=189.6
Q ss_pred hHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-------hhhHHHHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-------DEAPTLVSRLLDQLM 584 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-------~~~~~~l~~ll~~L~ 584 (1866)
..|.+|++++..++.+.+.+. +++.+++-++-.+.++..+||..+...+..++.... .-+++++-..+..|.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~-~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEV-KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHH-HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 467789999999999887654 688999999999999999999998887655544332 136788877788887
Q ss_pred cC-CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhC-cCchhc----HHh
Q 000201 585 KS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLG-RLFEPY----VIQ 657 (1866)
Q Consensus 585 ~~-~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~-i~~~~~~~~r~~al~al~~L~~~l~-~~~~p~----v~~ 657 (1866)
.+ ...-+|..-|.+|+.+++.. .+.......+..+ +.+..+.. +.+ ..++.+ +..
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nse--------------t~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSE--------------TAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccc--------------cccccccchHHHHHHHH
Confidence 76 44468999999999998753 1111111222222 11111110 011 011222 222
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh-HHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-~~~~l~ 735 (1866)
+-.....++.|+.+.||.+-.+.+..++..++...- +.+|+.|...|+|++|+-|-+-.+-|..++-..+.+ ..+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se--- 655 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE--- 655 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHH---
Confidence 333455677899999999999999998888877665 789999999999999999998888777766665554 333
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhhCCCChhHHHHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 797 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L 797 (1866)
-++|.+.+.|.|.++-|-..|..||..+++ .++.+.+.+++....-.+..|+..+|.+...+
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~i 719 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGI 719 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHH
Confidence 578999999999999999999999999886 35556677777777778888888888544433
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=0.00087 Score=83.24 Aligned_cols=320 Identities=16% Similarity=0.195 Sum_probs=201.6
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHH
Q 000201 582 QLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 661 (1866)
Q Consensus 582 ~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ 661 (1866)
+|..++....+|-..-+...+.... .+++-.+...+.++-+....-....|+..++...+ ......+.|-
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~-------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~Emardlape 146 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDER-------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMARDLAPE 146 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccc-------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHhHHhhHH
Confidence 3445555555555555555444422 23443444444332221122223344444444333 2345678888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
+-..++.+++.||+.|.-|+.++....+ +.+..+++...+.|.+++..+-.+++.++..+++..++.+. ++..+++-+
T Consensus 147 Ve~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~l 224 (866)
T KOG1062|consen 147 VERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSL 224 (866)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHH
Confidence 8888999999999999999988877654 55688899999999999999999999999999988776543 334455544
Q ss_pred hhhccC---------------CChHHHHHHHHHHHHHHhhccchhHHhHHHHHH-HhhC--CCChhHH-----HHHHHHH
Q 000201 742 TEVLTD---------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLL-MGLT--DPNDHTK-----YSLDILL 798 (1866)
Q Consensus 742 ~~~L~D---------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~-~~l~--d~~~~vr-----~al~~L~ 798 (1866)
+..|++ ++|..+-...+-|+-++.. ++...+.+..++ +... |.+.++- +|+.++.
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~ 302 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIM 302 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 444322 4578888888888888764 333333332222 2222 1222221 4555543
Q ss_pred hccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 799 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 799 ~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
.. ....+....-+.+|-+.+..++.++|.-+...+..... .++...+.+ -..+.++++|++..+|..|..
T Consensus 303 ~I----~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~--~d~~avqrH----r~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 303 DI----RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQ--QDPTAVQRH----RSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred hc----cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhc--CCcHHHHHH----HHHHHHHhcCCcHHHHHHHHH
Confidence 31 22233344456677777777777888887777777665 343333333 345667889999999999998
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 879 AIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 879 aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
.+-.++.. .....++..|+..|.+. +...+...+..+.++++.+.++
T Consensus 373 Ls~~lvn~---~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 373 LSYALVNE---SNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHhcc---ccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence 88887763 45667788888887765 3447788888888888888776
No 62
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=0.0038 Score=76.73 Aligned_cols=275 Identities=18% Similarity=0.279 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHhhcH---hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH--------H--hhhcchh
Q 000201 672 AVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--------S--QCLPKIV 738 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~---~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~--------~--~~l~~iv 738 (1866)
.+|+.---..+.+...-++ ..+...+...++.-.+.+|+.-..|+..+..++++.+..- + ..+..+.
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 5777664444444332222 2234445555555567889999999999999999865431 1 1222344
Q ss_pred HHHh--hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHH
Q 000201 739 PKLT--EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 739 ~~l~--~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.++ +++..+|+.|+-.-.+.+-++.+.+... ...+|.++.+..|+
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~------------------------------ 541 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDS------------------------------ 541 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccc------------------------------
Confidence 4433 3566777777777766666665544311 22444444443333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhH------------HHHHHHHHHHHH
Q 000201 817 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV------------RSVAARAIGSLI 884 (1866)
Q Consensus 817 ~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~v------------R~~a~~aL~~l~ 884 (1866)
+++.+.+..||..+...+..+.+.+. +.+.||.+.++..+..++..+.+.. +.-...++|.+.
T Consensus 542 ---rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI 616 (980)
T KOG2021|consen 542 ---RGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVII 616 (980)
T ss_pred ---hhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEE
Confidence 35555666777777777777776543 3566777777777777763222211 111222233222
Q ss_pred hhcC--CC----Chh---------hHHHHHHHhcccCCC----HHHHHHHHHHHHHHHHHhCh----------h-HHHHH
Q 000201 885 RGMG--EE----NFP---------DLVSWLLDALKSDNS----NVERSGAAQGLSEVLAALGT----------V-YFEHI 934 (1866)
Q Consensus 885 ~~~g--~~----~~~---------~l~~~L~~~L~~~~~----~~~R~~a~~~L~~l~~~~g~----------~-~l~~l 934 (1866)
..-. .+ +.. ..+-.+...+.++.+ ...-..++.+++.+++++.. . .+...
T Consensus 617 ~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ 696 (980)
T KOG2021|consen 617 TLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNI 696 (980)
T ss_pred eCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHH
Confidence 2100 00 111 111112222333222 12334555666666655421 1 33333
Q ss_pred HHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc
Q 000201 935 LPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 935 l~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
+..++..+.- ....+|.+.-..++++..++|+..-||+++.+..++...
T Consensus 697 ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 697 LDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 3333333322 245667777777888888888888888888888887764
No 63
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.4e-05 Score=89.03 Aligned_cols=338 Identities=19% Similarity=0.154 Sum_probs=211.4
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 660 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp 660 (1866)
+..+.+......|..+++.++-..+...+. -.++-+.+.+...+.. ..+--++.|+..++..-.....---...+.
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--evqcnaVgCitnLaT~d~nk~kiA~sGaL~ 170 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--EVQCNAVGCITNLATFDSNKVKIARSGALE 170 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--EEEeeehhhhhhhhccccchhhhhhccchh
Confidence 335566678889999999887766533221 1244455666666543 344446677777765421100000112344
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh--ChhhHHhhhc
Q 000201 661 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLP 735 (1866)
Q Consensus 661 ~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~--~~~~~~~~l~ 735 (1866)
.+..+-+.++..||..+..++..+-..-....+ ..-+|.+++.+.+.+..+|+-++..++.++-. ..+.+.+.=|
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 455567778889999988888776543222211 34588999999999999999999999988843 3455666678
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-hhH--HhHHHHHHHhhCCCChhH-HHHHHHHHhccccccCCcc-h
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTVDAP-S 810 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i--~~lv~~L~~~l~d~~~~v-r~al~~L~~~~~~~~~~~~-~ 810 (1866)
.++|.++.++.|.+++|+-.|..+|+.++....- .++ ..-+|.+.+.+++|.-.. -+.+..+-.. .+|...+. .
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni-sihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI-SIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc-ccccCcccce
Confidence 8999999999999999999999999999864321 112 345788999998876332 2222222111 11211110 0
Q ss_pred -hhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 811 -LALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 811 -l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
-+-++..+.+.+.- .+.+.+.+|...+-+++..... ..-.-+-..-+|.+..++.|....+|.....|+..++-.-.
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~-n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH-NVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh-hhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 11233445555554 3456999999999999863221 11111233578899999999999999998888888875422
Q ss_pred CC-Chh--hHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 889 EE-NFP--DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 889 ~~-~~~--~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
.+ ++- .++|.|+....+ .+.++|-.++.+|+.++..
T Consensus 409 ~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhh
Confidence 21 111 233434333333 3345888888888877654
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.56 E-value=0.013 Score=77.88 Aligned_cols=151 Identities=18% Similarity=0.240 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhh
Q 000201 633 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 633 r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~ 711 (1866)
+..+..++..++...+ |...+...+..++..++.+...+|..|..|+..++..-+.--. +.+...+...+.|.+-.+
T Consensus 794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 3345555555554322 2233334455566677899999999999999999874332211 667777888899999999
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH---HHHHhhCCCCh
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP---TLLMGLTDPND 788 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~---~L~~~l~d~~~ 788 (1866)
|.+|++++|...-+.++...+++ ..+.+-..|+...||+.+.+-+..++... |.+..++. .++....|...
T Consensus 872 REAaldLvGrfvl~~~e~~~qyY----~~i~erIlDtgvsVRKRvIKIlrdic~e~--pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQYY----DQIIERILDTGVSVRKRVIKILRDICEET--PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHHHH----HHHHhhcCCCchhHHHHHHHHHHHHHHhC--CChhhHHHHHHHHHHHhccchh
Confidence 99999999998888777665544 44566788999999999999999998754 44444444 44444556544
Q ss_pred hHH
Q 000201 789 HTK 791 (1866)
Q Consensus 789 ~vr 791 (1866)
++.
T Consensus 946 ~I~ 948 (1692)
T KOG1020|consen 946 NIK 948 (1692)
T ss_pred HHH
Confidence 444
No 65
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.56 E-value=0.013 Score=77.86 Aligned_cols=442 Identities=15% Similarity=0.173 Sum_probs=221.7
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch-hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHH-hhccchhhhhH
Q 000201 1311 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE-EGVESLVSELLKGVGDNQASIRRSSAYLIGYFY-KNSKLYLVDEA 1388 (1866)
Q Consensus 1311 ~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~-~~~~~~~~~~~ 1388 (1866)
+....+.+...|..-.||..+++.+..++...++ .....+...++.+..|+...+...++..+..+. ...+.. .+.
T Consensus 892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~--~d~ 969 (1692)
T KOG1020|consen 892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEV--NDQ 969 (1692)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcc--ccc
Confidence 3344445556677778888888888888876654 446677777788888887778777777777663 322211 111
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHH-HHHhhhhhhhhhhhcCCccccCCcCCCCCcccc
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIR-DAISTSRDKERRKKKGGPILIPGFCLPKALQPL 1467 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~-~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~i 1467 (1866)
+...+.+.... .+...+. .+. .+..+.++..+. ......... .+. +... ..+..+
T Consensus 970 ~~~~~kI~~~~-----~vv~~~~-----d~~---~~~~eqLl~~ilk~~~~~~~~~----~~~-~v~~------~~v~~~ 1025 (1692)
T KOG1020|consen 970 PAKARKISLEV-----DVVMSQV-----DLM---NDWLEQLLDHILKFYLLKTMKE----SVK-PVAL------AKVTHV 1025 (1692)
T ss_pred HHHHHhhHHHH-----HHHHHHH-----HHh---cChHHHHHHHHHHHHHhhhhhh----hhh-HHHH------hhcchH
Confidence 11111111110 0000000 000 011111111110 000000000 000 0000 112223
Q ss_pred HHHHHHhhcc------------CCHHHHH-HHHHHHHHHHhhcChhhhh-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 000201 1468 LPIFLQGLIS------------GSAELRE-QAALGLGELIEVTSEQSLK-EFVIPITGPLIRIIGDRFPWQVKSAILSTL 1533 (1866)
Q Consensus 1468 lp~l~~~L~~------------~~~~~r~-~a~~~L~~l~~~~~~~~l~-~~v~~i~~~Li~~l~~~~~~~vr~~al~~L 1533 (1866)
+.++.+++.. +..+.|. ....+|..+++.. +.-+. .|+..+-|-|..-........+-..++..+
T Consensus 1026 ~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fskir-P~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Il 1104 (1692)
T KOG1020|consen 1026 LNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIR-PQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQIL 1104 (1692)
T ss_pred HHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcC-chhccHHHHHHhhhHHhccccchHHHHHHHHHHHHH
Confidence 3333333221 1223333 3345566666655 33333 455444433332222222233444444444
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cC---ChhhHHHHHHHH---hccC---C----
Q 000201 1534 SIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-ST---RVDPLVGDLLSS---LQVS---D---- 1599 (1866)
Q Consensus 1534 ~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-~~---~~~~~l~~L~~~---l~~~---~---- 1599 (1866)
...+..+...-..|+..|-..+.+.+-..+...-..|..|+|.+..- .. .+...+...... ++.+ +
T Consensus 1105 e~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~ 1184 (1692)
T KOG1020|consen 1105 ECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIV 1184 (1692)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 44443333333446777777777777666777777888899988652 11 122233332222 2222 1
Q ss_pred --hhHHHHHHHHHHHHHHhcC--------cc---ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh----h
Q 000201 1600 --AGIREAILTALKGVLKHAG--------KS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED----G 1662 (1866)
Q Consensus 1600 --~~vr~~~l~aL~~vi~~~~--------~~---l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~----~ 1662 (1866)
+..+. .+..++.+..+.. .. ..+...+.++.+|.-+..+.+.++|..|...+|.+|...|. .
T Consensus 1185 ~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~ 1263 (1692)
T KOG1020|consen 1185 NFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSR 1263 (1692)
T ss_pred hhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhH
Confidence 22222 2334444444321 11 23456778888887777788899999999999999977664 2
Q ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhh-------CC-------------------CcccC----CcchHHHHH
Q 000201 1663 QLADLLQELLNLASSPSWAARHGSVLVFATFLRH-------NP-------------------SAISM----SPLFLSILD 1712 (1866)
Q Consensus 1663 ~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~-------~p-------------------~~~~~----~~~~~~~~~ 1712 (1866)
++..++..+++..+.... .+......+-..+.+ .+ ..... ......+++
T Consensus 1264 ~v~nly~~ila~~n~~~~-~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~ 1342 (1692)
T KOG1020|consen 1264 EVLNLYDEILADDNSDIK-SKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLD 1342 (1692)
T ss_pred HHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHH
Confidence 244444444432222111 111111111111111 00 00000 113355677
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchh
Q 000201 1713 RLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAI 1788 (1866)
Q Consensus 1713 ~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~ 1788 (1866)
.+...+-+.+..+|..|+..+.-.|..+. ..| ..-++-++..-.|+....|..|...+.-+=+..+..+
T Consensus 1343 ~ILe~cl~~d~~~r~~aikvl~liL~QGL-VhP------~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv 1411 (1692)
T KOG1020|consen 1343 NILESCLDRDLQVRLVAIKVLKLILNQGL-VHP------VHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFV 1411 (1692)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHccC-CCc------cchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77778888899999999999986665543 333 5677778888788999999999888777766555444
No 66
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=0.0061 Score=74.96 Aligned_cols=343 Identities=16% Similarity=0.123 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhhhCcchhhhcchHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHhC--cCchhcHH-hHHHHHH
Q 000201 594 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVI-QMLPLLL 663 (1866)
Q Consensus 594 ~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~-------~~~~~~~r~~al~al~~L~~~l~--~~~~p~v~-~llp~ll 663 (1866)
+|+..+..+....+.+.+ .++++++...+. +-+++...+||+..+..+..... +.++..+. -+++.++
T Consensus 389 aal~fl~~~~sKrke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 344444444444433334 478888887661 23567888899998888887332 23333333 3577788
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC--hhhHHhhhcchhHH
Q 000201 664 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVPK 740 (1866)
Q Consensus 664 ~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~--~~~~~~~l~~iv~~ 740 (1866)
..++++.-..|..+.+.+..+-..++..+. -.++......|.+.+-.++..|+.+|.-+.... ...++.|.|.++..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 889999999999999999998666666554 667777888888988999999999999877653 45578899999999
Q ss_pred HhhhccCCChHHHHHHHHHH-HHHHhhccc--hhH-HhHHH----HHHHhhCCCCh---hHH----HHHHHHH---hc--
Q 000201 741 LTEVLTDTHPKVQSAGQTAL-QQVGSVIKN--PEI-ASLVP----TLLMGLTDPND---HTK----YSLDILL---QT-- 800 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL-~~l~~~i~~--~~i-~~lv~----~L~~~l~d~~~---~vr----~al~~L~---~~-- 800 (1866)
++.+-++-+.++-..+.+.+ +++.+.++. +++ ..++. .....+.++++ .+. .|...|. +.
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 99998887776666655543 344433321 111 23333 33334444421 111 1222221 11
Q ss_pred cccc--cCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH-hHHHHHH
Q 000201 801 TFVN--TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 877 (1866)
Q Consensus 801 ~~~~--~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~-~vR~~a~ 877 (1866)
++.. .+-......+.|.+.-.+++.-.+.-..|++++.+..-.. +++.|....+...+.+++.++.. .--+.+.
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 1111 0111133445666665666666678888898887765422 35556666677777777776653 3345666
Q ss_pred HHHHHHHhhcCCC------ChhhHHHHHHHhcccCCC-HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Q 000201 878 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN 941 (1866)
Q Consensus 878 ~aL~~l~~~~g~~------~~~~l~~~L~~~L~~~~~-~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~ 941 (1866)
-++..+...-+.+ |..-+.......+.++.+ -.++.++++.+-.++-..+.+.++..+|.+.+.
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~v 774 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISV 774 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHH
Confidence 7777777643322 222233333444444433 246677777777777667666566666644443
No 67
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.54 E-value=0.00065 Score=87.67 Aligned_cols=177 Identities=16% Similarity=0.077 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc
Q 000201 1482 LREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ-VKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ 1560 (1866)
Q Consensus 1482 ~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~-vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~ 1560 (1866)
+|..|-.+|..+++.. +..+...++.+...|...+.+..+.+ .-...++.+..+...++..+++ +-+..+.+..++.
T Consensus 749 errgael~L~~l~~~f-g~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMF-GGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHh-hHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 5777778888888887 45555555666666666665432222 3334445555555556666666 5677788888899
Q ss_pred CCCHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc
Q 000201 1561 DSTRTVRSSAALALGKLSALS--TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY 1638 (1866)
Q Consensus 1561 d~~~~vR~~Aa~aLg~L~~~~--~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~ 1638 (1866)
..+..+|.++++|+|.+.... ......+..++..+.+.+.-++......+.+++.........+|..-+...|...+.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999995432 233445666666666555444444444444444444433333888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcC
Q 000201 1639 HDDDHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1639 ~~~~~vr~~aa~~l~~L~~~~~ 1660 (1866)
+..+.+|.++.+++..+....|
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999886554
No 68
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.51 E-value=0.035 Score=80.02 Aligned_cols=451 Identities=18% Similarity=0.279 Sum_probs=204.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHhccc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~----~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
..+..++..+.|....++.++...++.++...|..+ +|.+-...+..++. ....+......-+..++....--
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~v---l~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYV---LPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHH---hHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 445556777889999999999999999988778544 44444444333332 12222222222222332222111
Q ss_pred c---ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHH
Q 000201 1157 V---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKS 1232 (1866)
Q Consensus 1157 ~---l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~-~~vr~~A~~al~~l~~~ 1232 (1866)
+ ...++-.+...+.+.++.+-..+..+++++.... +..+..+.+.+++.+.+.+.|.. ..-|.++..+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~-g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG-GEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc-cchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 2 2222333333445566666667778888876544 34555566777777777777654 45567777888888766
Q ss_pred hchhh-----HhhHHHHHHHhccCCCchh---HHHHHHHHHhhccccccchhhh--------hhhhcCCccchhHHHHHH
Q 000201 1233 AGMQA-----IDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHIL--------PKLVHLPLSAFNAHALGA 1296 (1866)
Q Consensus 1233 ~g~~~-----~~~ilp~Ll~~L~~~~~~~---~al~~l~~il~~~~~~ilp~Li--------p~L~~~~~~~~~~~al~~ 1296 (1866)
-|... .+.++..+.+.+..+..+. .++..++ .++. ..|+.- -+....+.+.......
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g-~~g~----~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~-- 793 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLG-LLGA----LDPYKHKVTEGTSASKISSEQIKSDIDISL-- 793 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhh-hhcc----cchhHHHHHhhhhhHhhhhccccccchHHH--
Confidence 55421 1223444444443332221 1221111 1111 111100 0000000100000000
Q ss_pred HHHHhCCC-chhhHhhHHHHHHHhcCCCCHHHH-HHHHHHHhHhhhccc---hhcHHHHHHHHHhccCCCchhHHHHHHH
Q 000201 1297 LAEVAGPG-LNFHLGTILPALLSAMGDDDMDVQ-SLAKEAAETVTLVID---EEGVESLVSELLKGVGDNQASIRRSSAY 1371 (1866)
Q Consensus 1297 La~~~g~~-l~~~l~~il~~L~~~l~~~~~~vr-~~a~~~l~~l~~~~~---~~~~~~ll~~L~~~l~~~~~~vR~~a~~ 1371 (1866)
+....... ...|-...+..++..+.++..... .....+...+....+ ....+.+++.++.......+..+.....
T Consensus 794 ~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~ 873 (2341)
T KOG0891|consen 794 LESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQ 873 (2341)
T ss_pred HHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 00000111 111111222233333444321111 111222233333222 1335666666666555444445544333
Q ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHhcCC---cchhhhhHHHHHHHHhhhhhhhh
Q 000201 1372 LIGYFYKNSKLYLVDEAPNMISTLIVLLSDSD---STTVAAAWEALSRVVASVP---KEVQPSYIKVIRDAISTSRDKER 1445 (1866)
Q Consensus 1372 ~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~---~~v~~~A~~aL~~l~~~~~---~~~l~~l~~~l~~~l~~~~~~~~ 1445 (1866)
.+............+ .++.....+.+.+ ..+.......+..+...+. ..+++..+..........++.++
T Consensus 874 q~~~~~~~~~~h~~~----~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~ 949 (2341)
T KOG0891|consen 874 QLTSLVAIVRQHIRP----YMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDR 949 (2341)
T ss_pred hhhhhhhccchhHhh----hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchH
Confidence 333332211222222 2222222222211 1111111111111111111 11222222221111111111111
Q ss_pred hh---hcCCccccCCcCCCCCccccHHHHHHhhccC--CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC
Q 000201 1446 RK---KKGGPILIPGFCLPKALQPLLPIFLQGLISG--SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR 1520 (1866)
Q Consensus 1446 ~~---~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~--~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~ 1520 (1866)
.. ..++ ....|-....+..-+.|..++.+.+. ....+..+..+++.+.... .+..+...+..++.+.+...
T Consensus 950 ~~~~~~~~~-~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~---~~~~~~s~i~~~~~r~l~~s 1025 (2341)
T KOG0891|consen 950 VVSRKVLQS-LQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV---DLSEYASRIIHPLVRVLSSS 1025 (2341)
T ss_pred HHHHHhhHH-HHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh---HHHHHHHHHHHHHHHhhccc
Confidence 00 0000 01112122234444566666666554 3456677777777777644 67778888888899998764
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHH
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ 1552 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~ 1552 (1866)
.+.+..++.+++.+....+..+.-|.|-+.
T Consensus 1026 --~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1026 --PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred --hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 889999999999999999887776666544
No 69
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.47 E-value=0.015 Score=73.64 Aligned_cols=714 Identities=14% Similarity=0.106 Sum_probs=352.8
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHhChhH----------
Q 000201 862 KKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVY---------- 930 (1866)
Q Consensus 862 ~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~---------- 930 (1866)
.....++++.+|..|-..+..+...-| +-..|.+...+. .+-..|+.++..|-..+...+...
T Consensus 10 L~~~ls~d~~vr~~AE~~l~qle~~~~------f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~ 83 (1005)
T KOG2274|consen 10 LSGSLSADQNVRSQAETQLKQLELTEG------FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIV 83 (1005)
T ss_pred HHhhcCCChhHHHHHHHHHhccccchH------HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcc
Confidence 344557889999999888876654322 333444443332 344578888877777777654321
Q ss_pred ---HHH-HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc
Q 000201 931 ---FEH-ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 931 ---l~~-ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~ 1006 (1866)
.+. +-..+...+.+++..+|.++..++..++..--++ -.++++|.+++++.+.+.+--..+++++..+....-
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd---~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD---EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch---hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 122 2234455556778889999888888888764332 567899999999998777777788888888776553
Q ss_pred ccc----hhchHHhHhccc---CCCchHHHHHHH--HHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 1007 TTS----LPLLLPAVEDGI---FNDNWRIRQSSV--ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 1007 ~~~----i~~llp~l~~~l---~d~~w~vR~~s~--~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
.+. ....++.+.... ...+-..|..++ .++...+..+... . +.. ++..+.+....-.
T Consensus 161 ~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~---------~---e~~-~~~~~~~~s~~l~- 226 (1005)
T KOG2274|consen 161 VEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNV---------E---EVW-AEHVKVFLSQILN- 226 (1005)
T ss_pred HHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHH---------H---HHH-HHHHHHHHHHHHH-
Confidence 221 122344443322 122333444333 3333332221100 0 000 0011111111000
Q ss_pred hhHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHH-H--HHH
Q 000201 1078 KRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE-L--VRK 1152 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~~D-~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~-l--v~~ 1152 (1866)
.+-+++...+ .+++ .++..|..-+.++..++.+.|....+++-..++.....+.. -...+|......=.. - ...
T Consensus 227 ~~~~~l~h~l-~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~ds 305 (1005)
T KOG2274|consen 227 QFMDILEHPL-QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDS 305 (1005)
T ss_pred HHHHHHhhhh-cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCC
Confidence 0011111111 2333 34678888888999999988866555444433332221110 000011100000000 0 000
Q ss_pred hccc-----cccchHHHHhcccCCCCccchhhHHHHHHHHH------HhhchhhHHhhHhhHHHHHHHhhcCCc--HHHH
Q 000201 1153 LGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM------ASAGKSQLLSFMDELIPTIRTALCDSI--LEVR 1219 (1866)
Q Consensus 1153 ~~~~-----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li------~~~~~~~l~~~l~~ll~~l~~~L~d~~--~~vr 1219 (1866)
-++. ..-+++..+...+.. ...+......+.+++ ...+.+++..+... ......|.+ ..+|
T Consensus 306 d~e~~~~~~l~i~i~eF~s~i~t~--~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD----~~~fV~dEd~~~~~~ 379 (1005)
T KOG2274|consen 306 DPEEKSVETLVIQIVEFLSTIVTN--RFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSD----VNQFVADEDDGYTAR 379 (1005)
T ss_pred chhhhChHHhhhhHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhcc----HHHhhccCCCCchhh
Confidence 0000 000011110000000 000000000000000 00011111111100 111222222 2344
Q ss_pred HHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHH
Q 000201 1220 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAE 1299 (1866)
Q Consensus 1220 ~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~ 1299 (1866)
......+-.+...+|...+..+....-+.+.... ..+ ....+..-....++-.-..
T Consensus 380 ~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~-------------at~-----------~~~~~~~wk~qea~l~a~~ 435 (1005)
T KOG2274|consen 380 ISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQ-------------ATY-----------LFNNESWWKIQEALLVAAE 435 (1005)
T ss_pred hhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHH-------------HHH-----------HhcchHHHHHHHHHHHHHh
Confidence 4444444444444554333333221111111000 000 0000000000000000001
Q ss_pred H--hCCCchhhHhhHHHHHHHhcC-CCCHHHHHHHHHHHhHhhhc--cchhcHHHHHHHHHhcc-CCCchhHHHHHHHHH
Q 000201 1300 V--AGPGLNFHLGTILPALLSAMG-DDDMDVQSLAKEAAETVTLV--IDEEGVESLVSELLKGV-GDNQASIRRSSAYLI 1373 (1866)
Q Consensus 1300 ~--~g~~l~~~l~~il~~L~~~l~-~~~~~vr~~a~~~l~~l~~~--~~~~~~~~ll~~L~~~l-~~~~~~vR~~a~~~l 1373 (1866)
. .+.....++..++..+...+. .+.+.+-..+..++.....+ +..+-+..++...+..+ .+..+.+|..|+.++
T Consensus 436 ~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~ 515 (1005)
T KOG2274|consen 436 SVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAF 515 (1005)
T ss_pred hcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHH
Confidence 1 233344455555555555543 33454444666666666655 33344555666555554 355677899999988
Q ss_pred HHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCcc
Q 000201 1374 GYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPI 1453 (1866)
Q Consensus 1374 ~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 1453 (1866)
..++ ......+..|.+++.|..+..+...++...-.++|+.+++..++....
T Consensus 516 ~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-------------------------- 567 (1005)
T KOG2274|consen 516 CGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-------------------------- 567 (1005)
T ss_pred Hhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh--------------------------
Confidence 8887 556678888999999999999999999999999999988765542100
Q ss_pred ccCCcCCCCCccccHHHHHHhhc--cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC---CCHHHHHH
Q 000201 1454 LIPGFCLPKALQPLLPIFLQGLI--SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSA 1528 (1866)
Q Consensus 1454 ~l~g~~~~~~l~~ilp~l~~~L~--~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~ 1528 (1866)
.-+.+.|.+..... +.+|-+-..+-.++.+++.. .....|+....+|.++.+++.. .+......
T Consensus 568 ---------~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~ 636 (1005)
T KOG2274|consen 568 ---------MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQERLIPSLISVLQLNADKAPAGLCAI 636 (1005)
T ss_pred ---------hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHHHHHHHHHHHHcCcccccCchhhHH
Confidence 00123333332222 23444444555566666653 4567788888889999988753 23566778
Q ss_pred HHHHHHHHHHhcCCCCCC-chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc----------cCCh-hhHHHHHHHHh
Q 000201 1529 ILSTLSIIIRKGGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSAL----------STRV-DPLVGDLLSSL 1595 (1866)
Q Consensus 1529 al~~L~~L~~~~~~~~~~-~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~----------~~~~-~~~l~~L~~~l 1595 (1866)
++..|..+++..+..+.. ++.+..|.+.+|.-.+ +-.+-..+..||..++.. .|+. -.++-.++..+
T Consensus 637 aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqL 716 (1005)
T KOG2274|consen 637 AIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQL 716 (1005)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHH
Confidence 888899899988765432 4456778888886555 557777888999877542 1222 23555555565
Q ss_pred ccCC--hhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 000201 1596 QVSD--AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY-HDDDHVRVSAASILGIMSQCMEDGQLADLLQELL 1672 (1866)
Q Consensus 1596 ~~~~--~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~-~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll 1672 (1866)
-+++ ......+-.-+..++.++|..++ +..++|+..+..-+. ...-.+...-...+..|... ..+++++++.
T Consensus 717 Ldp~~sds~a~~VG~lV~tLit~a~~el~-~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t----~~~~~l~FL~ 791 (1005)
T KOG2274|consen 717 LDPETSDSAAAFVGPLVLTLITHASSELG-PNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT----DLDQLLNFLS 791 (1005)
T ss_pred cCCccchhHHHHHhHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC----CHHHHHHHHH
Confidence 4443 22223444566678888888887 555555554433232 23334444333444444332 3556666655
Q ss_pred h
Q 000201 1673 N 1673 (1866)
Q Consensus 1673 ~ 1673 (1866)
.
T Consensus 792 S 792 (1005)
T KOG2274|consen 792 S 792 (1005)
T ss_pred h
Confidence 4
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.46 E-value=8.3e-07 Score=83.99 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 632 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
.|.|++.++..++.+++....+|+..++|.++.++.|+ +|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~--------------------------------------d~rV 43 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQ--------------------------------------DSRV 43 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCC--------------------------------------cHHH
Confidence 46677777777777776656666666666655555555 5555
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHH
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 763 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l 763 (1866)
|..|++.|.++++.....+..++++|++.+.++..|+++.||.+| +.|.++
T Consensus 44 Ry~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 44 RYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 555556666666666666677889999999999999999999988 444444
No 71
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.46 E-value=0.0002 Score=89.57 Aligned_cols=361 Identities=18% Similarity=0.195 Sum_probs=214.9
Q ss_pred HHHHHHHcCCCh--hHHHHHHHHHHHHHhhhCc-chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc---
Q 000201 578 RLLDQLMKSDKY--GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF--- 651 (1866)
Q Consensus 578 ~ll~~L~~~~~~--~~R~~A~~~L~~l~~~~g~-~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~--- 651 (1866)
.++..|.++++. ...+.....|+.+...... +.+ ...++..+....+.+.+.......+.++..+.+......
T Consensus 3 ~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~-~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 3 ALLALLPDSDSSTDSNYERILEALAALSTSPQILETL-SIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred hHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 344444433321 3344455555555543321 111 113344444444444445556666666666665543222
Q ss_pred --hhcHHh-HHHHHHHHcCC-----C--CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcC----------CCC--h
Q 000201 652 --EPYVIQ-MLPLLLVAFSD-----Q--VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE----------DKA--W 709 (1866)
Q Consensus 652 --~p~v~~-llp~ll~~~~D-----~--~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~----------~~~--w 709 (1866)
.-|... ++|.++..... . +..+=..+...+..++..++.+.-..++..+....- +.. +
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 233443 67766655422 1 356777778888888888887665555555544332 122 2
Q ss_pred hhHHHHHHHHHHHHhhChhhHH-hhhcchhHHHhhhc-cCCChHHHHHHHHHHHHHHhhccch-hHHhHHHHHHHhhCCC
Q 000201 710 RTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDP 786 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~~~~~~~-~~l~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv~~L~~~l~d~ 786 (1866)
......+.++.++..+.+.... .....++..++... +..++..|..+++++..+.....+. .+..++..+.....
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~-- 239 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSIS-- 239 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhc--
Confidence 2333344444455444433321 23345666666553 3445888999999999888665432 34555554444330
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
.......|..+.+++..+.+.+--. -.+....++..+.+.+.
T Consensus 240 ------------------------------------~~~~~~~~~~~~~~~~Wi~KaLv~R--~~~~~~~~~~~L~~lL~ 281 (415)
T PF12460_consen 240 ------------------------------------SSEDSELRPQALEILIWITKALVMR--GHPLATELLDKLLELLS 281 (415)
T ss_pred ------------------------------------ccCCcchhHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHhC
Confidence 0111233334444444444322000 01334445666666666
Q ss_pred CCCHhHHHHHHHHHHHHHhhcCC----------------CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-
Q 000201 867 DPIPEVRSVAARAIGSLIRGMGE----------------ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 929 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~~~g~----------------~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~- 929 (1866)
+ +++...++++++.+....++ ..|..++|.+++..++..+. .|.....+|+.+.+..+..
T Consensus 282 ~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 282 S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCCHHH
Confidence 6 66777888888877765221 15778899999888765543 6777888999999988876
Q ss_pred ---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh
Q 000201 930 ---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 982 (1866)
Q Consensus 930 ---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~ 982 (1866)
.++.++|.+++.+..+++.++.+++.++..+....+..+.+|++.++|.+++.
T Consensus 359 l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 55789999999999999999999999999999988999999999999998864
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.42 E-value=0.00033 Score=87.58 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
..+++..++....+..+...|.++++.++.++........ -..++..+...+....+...|..++..+..+..++--.-
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4567777887777777788999999999999997543321 123444444444233345667778888888888754333
Q ss_pred hhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----------------hhHHhHHHHHHhhcCCCChhhHHHH
Q 000201 652 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----------------QGVKLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 652 ~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~----------------~~v~~llp~L~~~L~~~~w~~r~~a 715 (1866)
.|...+++..++..+.| +.+...++.+++.++...+. .-+..++|.+++...+.+-..|...
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 57777888889988888 67788899999888875221 1135689999999887776689999
Q ss_pred HHHHHHHHhhChhh-HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---chhHHhHHHHHHH
Q 000201 716 VQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLM 781 (1866)
Q Consensus 716 ~~~L~~l~~~~~~~-~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~~i~~lv~~L~~ 781 (1866)
+.+|..+.++.|.. +..+++.++|.+++.|.-+++.|+.++..+|..+...-. .+++..++|.|++
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999977 567899999999999998899999999999998886442 1234556666654
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00093 Score=83.34 Aligned_cols=354 Identities=17% Similarity=0.182 Sum_probs=203.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--
Q 000201 813 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-- 890 (1866)
Q Consensus 813 ~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-- 890 (1866)
.+...+.++++|.++.+|+.++..+..+... +++.. .-..+++.|..++.|.++.|-..|..++..+.+.-...
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcC--Chhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 3445556667777777787777777776652 11111 12347778888888999999888888888888865432
Q ss_pred --ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 891 --NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 891 --~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
....++..++..+..-.++ -+... +..+......+ -...++..+...+.+.++.+--++...+-.+...+..
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW-~qi~I---L~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEW-GQIFI---LDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhh-hHHHH---HHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 2334556666666544444 23333 33333444333 2345666666677777777766666666666666555
Q ss_pred hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 967 ~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
--..++..+.|+++..++.+. ++...+++-...++...+.- ...-+..+.-...|+-+ ++..-++.+..+
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~-~~~~~~~Ff~kynDPiY-vK~eKleil~~l------- 342 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEI-LKVEIKVFFCKYNDPIY-VKLEKLEILIEL------- 342 (734)
T ss_pred HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHH-HHhHhHeeeeecCCchh-hHHHHHHHHHHH-------
Confidence 334466777788887776554 77777777666666544321 10000000000011111 222222222222
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1126 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~ 1126 (1866)
...+...+++..+...-.+.+...-+.|+.+++.++....+. ...+ +.
T Consensus 343 ---------------------------a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv----~~ 390 (734)
T KOG1061|consen 343 ---------------------------ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCV----SI 390 (734)
T ss_pred ---------------------------hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhH----HH
Confidence 122233446666666667777777888999999888755443 2334 44
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCC-CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHH
Q 000201 1127 LISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD-PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205 (1866)
Q Consensus 1127 L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d-~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1205 (1866)
++..+.-....+-+.+...+..+.++++... ..+++.+...+.+ .+|+.|.+..|.+++-.... +....++.
T Consensus 391 lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i------~~a~elL~ 463 (734)
T KOG1061|consen 391 LLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYAERI------ENALELLE 463 (734)
T ss_pred HHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhhhcc------CcHHHHHH
Confidence 4444443344455566777777777766543 4455555554443 35677888888787754333 23356666
Q ss_pred HHHHhhcCCcHHHHHHHH
Q 000201 1206 TIRTALCDSILEVRESAG 1223 (1866)
Q Consensus 1206 ~l~~~L~d~~~~vr~~A~ 1223 (1866)
.+.+.+.|...+|+-.-.
T Consensus 464 ~f~en~~dE~~~Vql~LL 481 (734)
T KOG1061|consen 464 SFLENFKDETAEVQLELL 481 (734)
T ss_pred HHHhhcccchHHHHHHHH
Confidence 677777777777775433
No 74
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.40 E-value=6.7e-06 Score=106.12 Aligned_cols=340 Identities=17% Similarity=0.193 Sum_probs=218.5
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHH
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 935 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll 935 (1866)
.+..+...+.-..+..-..++.++..++...|... ...-..+.+..+. +. .+|..+...+.++.+-.|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~-D~--nvr~~~~~l~v~i~r~~G~~~~~~~- 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA-DK--NVRSEASKLLVEIYRWTGDASKPLL- 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc-cc--ccchhhcccchhhhhhcCCCcCccc-
Confidence 34444555555566666677788888888777542 1111112223333 22 3788888888888887776522111
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHHH--HHHHH------------HH
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDA--ALGAG------------HV 1000 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~~--a~~al------------~~ 1000 (1866)
.+......++.+..+.|.....+...--+.......+. .+++... .-... ..
T Consensus 175 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~ 241 (815)
T KOG1820|consen 175 -------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDN 241 (815)
T ss_pred -------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccc
Confidence 13333444555555544322222222212222221111 1111100 00000 00
Q ss_pred HHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH
Q 000201 1001 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1080 (1866)
Q Consensus 1001 i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~ 1080 (1866)
+.-.-..+..+.+-+.++..+.+++|+-|..+++-+...+..-.+. . .. .+.+
T Consensus 242 ~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~-~---------~~-----------------~~~~ 294 (815)
T KOG1820|consen 242 FDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE-I---------VK-----------------GYTG 294 (815)
T ss_pred cccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc-c---------cc-----------------Ccch
Confidence 0000011233456778888899999999999998888876442200 0 00 0011
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1160 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~ 1160 (1866)
.+...+-....|.+..|-..|+.++..++...+..+..+...+++.++.++.+....+|.....++..++. ...+..
T Consensus 295 ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~ 371 (815)
T KOG1820|consen 295 LLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPLSK 371 (815)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHH
Confidence 11112223468999999999999999999988888999999999999999999999999999999988876 334667
Q ss_pred hHHHHhcccCCCCccchhhHHHHHHHHHHhhchh-hHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1161 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1161 llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
+.+.+..++++.++..|.....++...+...++. ....-...++|.+..+.+|.+.+||.+|..+++.+++.+|...+.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888888999999999999999999888877742 234456889999999999999999999999999999999986665
Q ss_pred hHHH
Q 000201 1240 EIVP 1243 (1866)
Q Consensus 1240 ~ilp 1243 (1866)
.++.
T Consensus 452 k~L~ 455 (815)
T KOG1820|consen 452 KLLK 455 (815)
T ss_pred HHHH
Confidence 5544
No 75
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.39 E-value=1.5e-06 Score=82.32 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch---hHHhHHHHHHHhhCCCC
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L~~~l~d~~ 787 (1866)
.|++++..|++++...++.+..+++.|+|.++.++.|++++||..||++|..+++..++. .+.++++.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 589999999999999999999999999999999999999999999999999999988764 45788999999999999
Q ss_pred hhHHHHHHHH
Q 000201 788 DHTKYSLDIL 797 (1866)
Q Consensus 788 ~~vr~al~~L 797 (1866)
+.||.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 9998766654
No 76
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.39 E-value=0.003 Score=75.02 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=177.4
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
..+..+.|.|...+.+...-|...++..+..++..- .-..++++.+..|...+..+....|-.|++.|..++-..+
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n----v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN----VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 456678999999999988888888888888877531 1234677889999999999999999999999999998766
Q ss_pred CCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 889 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 889 ~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
... .-+=+.+ +.|-++. .|.-+..++..+.+.-..+..+.++..+.....+-....|..++.++..|+..++..-
T Consensus 336 ~kv-~vcN~ev-EsLIsd~---Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 336 QKV-SVCNKEV-ESLISDE---NRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred cee-eecChhH-HHHhhcc---cccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 441 1111112 2222332 3455566676776665555777777777777766667777788888888888888765
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchH-HHHHHHHHHHHHHHHhcCCc
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTS 1047 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~-vR~~s~~ll~~ll~~~~~~~ 1047 (1866)
..|+.-+...+++ ...-+.+..+.+++..+++..+.. -...+..+...+.|-.+. +- ++
T Consensus 411 ~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDcey~~I~---vr------------- 470 (898)
T COG5240 411 LSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCEYHQIT---VR------------- 470 (898)
T ss_pred HHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcchhHHH---HH-------------
Confidence 5566555444443 223456667777777766654221 111222232222222211 11 11
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhchh-----hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHH-
Q 000201 1048 GKALLEGGSDDEGASTEAHGRAIIEVLGRD-----KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP- 1121 (1866)
Q Consensus 1048 ~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~-----~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~- 1121 (1866)
+...+|.+ .-.+.+..+|...-=.+..||.+|+.+|..++-+.... +.|
T Consensus 471 ----------------------IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~ 525 (898)
T COG5240 471 ----------------------ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQ 525 (898)
T ss_pred ----------------------HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHH
Confidence 12222221 00112222332222245679999999999887654431 222
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000201 1122 VLMNTLISSLASSSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1122 ~l~~~L~~~l~~~~~~~R~~A~~~L~~l 1149 (1866)
.+...+.+++.+.+.++|..|...+..+
T Consensus 526 sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 526 SVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3345566788899999999988777654
No 77
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0033 Score=73.23 Aligned_cols=488 Identities=14% Similarity=0.119 Sum_probs=253.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcccc----hhchHHhH---------hcccCCCchHHHHHHHHHHHHHHHHhcCCccccccc
Q 000201 987 NESVRDAALGAGHVLVEHYATTS----LPLLLPAV---------EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1053 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~~----i~~llp~l---------~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~ 1053 (1866)
...||..|+..+....+.++++. ...++|.- .-+++|++.|.|.-+++....+++.- |.-+.
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-----k~fls 83 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-----KQFLS 83 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-----HHHHH
Confidence 45789999888888877766542 22233322 23578999999999999998887531 00000
Q ss_pred --CCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH--HHhHHHHHHHHHH
Q 000201 1054 --GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLIS 1129 (1866)
Q Consensus 1054 --~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l--~~~l~~l~~~L~~ 1129 (1866)
.+-.+..+..-.+ ++....- ...+++-. ....+.+..+-...++++..++.++|-.- -.++-.+...+..
T Consensus 84 ~a~~~~~~~ftpf~v--~~a~si~--~~~r~l~~--~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~ 157 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSV--MIACSIR--ELHRCLLL--ALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKP 157 (728)
T ss_pred HHhccCCcCCCchHH--HHHHHHH--HHHHHHHH--HHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 0001111111000 0111000 00111111 11234455666778999999999988432 1256667777888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhcc----------------ccccchH-------------------------------
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGE----------------RVLPSII------------------------------- 1162 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~----------------~~l~~ll------------------------------- 1162 (1866)
.+.++++.+|..+...++.++..... ..+|++-
T Consensus 158 ~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 237 (728)
T KOG4535|consen 158 YIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWL 237 (728)
T ss_pred HhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcce
Confidence 88999999999999999988753210 0011100
Q ss_pred --------HHHhc----------ccCC--CCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHH
Q 000201 1163 --------PILSR----------GLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1222 (1866)
Q Consensus 1163 --------p~L~~----------~L~d--~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A 1222 (1866)
|...+ .+.. .-..+|.++++.|..+...++ ....|.-++...+...+.+.++.+...+
T Consensus 238 i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~RvI~~~~~~~~p~~~l~~ 315 (728)
T KOG4535|consen 238 IRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGRVICKCMGEADPSIQLHG 315 (728)
T ss_pred eeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCCChHHHHHH
Confidence 00000 0000 011345666666655443332 2344566677777778889999999998
Q ss_pred HHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHH-HHHHhhccc--cccchhhhhhhhcCCccchhHHHHHHHHH
Q 000201 1223 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDG-LKQILSVRT--TAVLPHILPKLVHLPLSAFNAHALGALAE 1299 (1866)
Q Consensus 1223 ~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~-l~~il~~~~--~~ilp~Lip~L~~~~~~~~~~~al~~La~ 1299 (1866)
+.++..+....+.+ ..| +.-.+ .-..+ +..++..+. ........+. .......++.++..
T Consensus 316 a~ll~~lg~~lv~~----~~P-------~~~k~-~~q~~~fw~~~l~~p~~~~~YDs~~~T-----l~~s~Cdals~i~~ 378 (728)
T KOG4535|consen 316 AKLLEELGTGLIQQ----YKP-------DSTKA-PDQRAPFWTMMLNGPLPRALYDSEHPT-----LQASACDALSSILP 378 (728)
T ss_pred HHHHHHHHHHHhhh----cCC-------Ccccc-hhhhccHHHHHccCCChhhhhhhcCCC-----chhHHHHHHhhcCc
Confidence 88887765544421 111 00000 11111 233332110 1111111111 11122334444433
Q ss_pred HhCCCchhhHhhHHHHHHHhcCCCC-HHHHHHHHHHHhHhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 000201 1300 VAGPGLNFHLGTILPALLSAMGDDD-MDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIG 1374 (1866)
Q Consensus 1300 ~~g~~l~~~l~~il~~L~~~l~~~~-~~vr~~a~~~l~~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~ 1374 (1866)
..-..|..--....+.....+.|.. .-++.++..+.+..+.+-+. ..+......++..+.|.....|..+++.+|
T Consensus 379 ~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawtlg 458 (728)
T KOG4535|consen 379 EAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLG 458 (728)
T ss_pred hhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhh
Confidence 3223333333456666666665433 44677777776665553322 224555566666777777888999999999
Q ss_pred HHHhh----ccc---hhhhhHHHHHHHHHHHhC---CCChhHHHHHHHHHHHHHhcCCcchhhhhHHHH-HHHHhhhhhh
Q 000201 1375 YFYKN----SKL---YLVDEAPNMISTLIVLLS---DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVI-RDAISTSRDK 1443 (1866)
Q Consensus 1375 ~l~~~----~~~---~~~~~~~~il~~L~~ll~---d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l-~~~l~~~~~~ 1443 (1866)
.+-.. .+. .-.......+..+...-. -....|+.+|..+|+.+..... .+.+.- ...++.. .
T Consensus 459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq-----~i~~~~~~e~~~~~--~ 531 (728)
T KOG4535|consen 459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQ-----PIEKPTFAEIIEES--I 531 (728)
T ss_pred hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHH-----HhhhccHHHHHHHH--H
Confidence 88542 221 112233444444444332 2345799999999999875322 111111 1111100 0
Q ss_pred hhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh-hhhhhhhhhhhHHHHHHhcCCCC
Q 000201 1444 ERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFP 1522 (1866)
Q Consensus 1444 ~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~-~~l~~~v~~i~~~Li~~l~~~~~ 1522 (1866)
...+. + ....+...+|-+++.++|.+.++-.- -.-.++.+.+++.|...+.+..+
T Consensus 532 ---~~l~~-------~--------------v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 532 ---QALIS-------T--------------VLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN 587 (728)
T ss_pred ---Hhccc-------c--------------eecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence 00000 0 01123456888999999999975411 11235566677777777766556
Q ss_pred HHHHHHHHHHHHH
Q 000201 1523 WQVKSAILSTLSI 1535 (1866)
Q Consensus 1523 ~~vr~~al~~L~~ 1535 (1866)
..||..|..+|..
T Consensus 588 FKVRi~AA~aL~v 600 (728)
T KOG4535|consen 588 FKVRIRAAAALSV 600 (728)
T ss_pred ceEeehhhhhhcC
Confidence 6677666665553
No 78
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.3e-05 Score=87.40 Aligned_cols=494 Identities=17% Similarity=0.156 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-cCchhcHHhHHH--------H-HHHHcCCCCHHHHHHHHHHHHHHHH-------------
Q 000201 630 AKRREGALLAFECLCEKLG-RLFEPYVIQMLP--------L-LLVAFSDQVVAVREAAECAARAMMS------------- 686 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~-~~~~p~v~~llp--------~-ll~~~~D~~~~VR~~a~~al~~i~~------------- 686 (1866)
..+|++|+.+|..+...++ +.|-.|+..++| . ++-.++|+++..|..|.+.+..+..
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 5789999999999888766 556677665554 2 3345789999999998888776653
Q ss_pred --hhcHhhH------HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhh-HH-hhhcchhHHHhhhccCCChHHHHH
Q 000201 687 --QLSAQGV------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LS-QCLPKIVPKLTEVLTDTHPKVQSA 755 (1866)
Q Consensus 687 --~l~~~~v------~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~-~~-~~l~~iv~~l~~~L~D~~~~VR~a 755 (1866)
+++++.+ .....-++-.|. +.+..+-...+.+|..+....|-. +. ..+-+++..+.++.+.+++.||..
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs 169 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS 169 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence 2222222 112222333332 445677777888999999888743 22 234567777788889999999999
Q ss_pred HHHHHHHHHhhcc-chhHHhHHHHHHHh--hCCCChhHHHHHHHHHh------ccccccCCcchh---------------
Q 000201 756 GQTALQQVGSVIK-NPEIASLVPTLLMG--LTDPNDHTKYSLDILLQ------TTFVNTVDAPSL--------------- 811 (1866)
Q Consensus 756 A~~aL~~l~~~i~-~~~i~~lv~~L~~~--l~d~~~~vr~al~~L~~------~~~~~~~~~~~l--------------- 811 (1866)
+...++.+...-. -|+++..+..-... +.-|.....+..+.+-. +........+.-
T Consensus 170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~ 249 (728)
T KOG4535|consen 170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPK 249 (728)
T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCC
Confidence 9999988875332 24443322111100 00000001111111110 000000000000
Q ss_pred --hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 812 --ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 812 --~~l~p~L~~~l~d--~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
.-......+.+.. .-..+|..+.+.+..++..++ ....|.-++...+...+.++.+.++..+++++..+...+
T Consensus 250 ~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l 326 (728)
T KOG4535|consen 250 EDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL 326 (728)
T ss_pred ccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence 0011112222222 123689999999998887653 344566677778888888999999999999999998877
Q ss_pred CCCChh------hHHHHHHHhcc-cC--------CCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhcc-CChh
Q 000201 888 GEENFP------DLVSWLLDALK-SD--------NSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSH-QRAS 948 (1866)
Q Consensus 888 g~~~~~------~l~~~L~~~L~-~~--------~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~-~~~~ 948 (1866)
+.++.+ .....+.-.+. .. .........+..++.+...-... --....+.+...+.+ .+.-
T Consensus 327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRL 406 (728)
T ss_pred hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHH
Confidence 743222 11111111111 00 00112334455555543321110 112344455555554 3666
Q ss_pred HHhHHHHHHHHhhhhhch-hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------chhchHHhH
Q 000201 949 VRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLLLPAV 1017 (1866)
Q Consensus 949 vR~~al~~l~~L~~~~g~-~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~i~~llp~l 1017 (1866)
+|..++..++.+..+-+- .-..+.......++..+.|..-++|..+..++..|...+-.. .+..++..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 777777777655444332 223456666777778888877788888887777665543211 111111111
Q ss_pred hc---ccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH-HHHHHHHHhcCCC
Q 000201 1018 ED---GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDV 1093 (1866)
Q Consensus 1018 ~~---~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~-~vl~~L~~~~~D~ 1093 (1866)
.. ...-.++|||..+++.+|.+++-+...... .++ +..+ .+...+.......
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~-----------------------~~~-e~~~~~~~~l~~~v~~~~ 542 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP-----------------------TFA-EIIEESIQALISTVLTEA 542 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc-----------------------cHH-HHHHHHHHhcccceeccc
Confidence 11 112246677777788777776443211000 000 0000 1111111123445
Q ss_pred cHHHHHHHHHHHHHHhhcChhhH--HHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLA-SSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l--~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv 1150 (1866)
...||..|+.+++.+..|..-.+ .++.+.+++.++..+. ..+..+|..|+.+|..-.
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 67899999999999998643212 2355666666665554 467788888888776543
No 79
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.02 Score=70.66 Aligned_cols=283 Identities=22% Similarity=0.260 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHH
Q 000201 874 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 874 ~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
-.|..++|.+-...|.+ ....|.+.|++.+...+|.+++-+||-.. +|... .++...+...+..++.-.-+++
T Consensus 397 GGalyAlGLIhA~hG~~----~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~--mGSa~-~eiYe~lKevLy~D~AvsGEAA 469 (929)
T KOG2062|consen 397 GGALYALGLIHANHGRG----ITDYLLQQLKTAENEVVRHGACLGLGLAG--MGSAN-EEIYEKLKEVLYNDSAVSGEAA 469 (929)
T ss_pred cchhhhhhccccCcCcc----HHHHHHHHHHhccchhhhhhhhhhccchh--ccccc-HHHHHHHHHHHhccchhhhhHH
Confidence 36778888877665544 67777788887777779999988887543 33321 2333444444444444334444
Q ss_pred HHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHH
Q 000201 954 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1032 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s 1032 (1866)
--.+|-+-..... .+.+.-++.+..+. .+.+... +..+-.++ .++.. ...-|.+.+.+.|++.-+|.+.
T Consensus 470 gi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RG-l~vGiaL~-~ygrq--e~Ad~lI~el~~dkdpilR~~G 539 (929)
T KOG2062|consen 470 GIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRG-LAVGIALV-VYGRQ--EDADPLIKELLRDKDPILRYGG 539 (929)
T ss_pred HHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHH-HHHhHHHH-Hhhhh--hhhHHHHHHHhcCCchhhhhhh
Confidence 4444433221111 12333333333322 2232221 11111111 12211 1122334444566666677655
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhc
Q 000201 1033 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVRQAALHVWKTIVAN 1111 (1866)
Q Consensus 1033 ~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~-~~~~D~~~~vR~~A~~~l~~l~~~ 1111 (1866)
+-.++- .+. |. -.+..+..|. ...+|.+..||++|+..++.+.-.
T Consensus 540 m~t~al-Ay~--------------------------------GT-gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 540 MYTLAL-AYV--------------------------------GT-GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHHH-HHh--------------------------------cc-CchhhHHHhhcccccccchHHHHHHHHHheeeEec
Confidence 433321 111 11 1122333333 246899999999999999998877
Q ss_pred ChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh
Q 000201 1112 TPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1191 (1866)
Q Consensus 1112 ~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~ 1191 (1866)
.|.. +|..+..|. .+-++.+|..++.+||-.|...|.. ..+..|.....|+..-||++||.+++-++..+
T Consensus 586 dp~~----~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 586 DPEQ----LPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred Chhh----chHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 7754 344444443 2458899999999999988776654 33444555556888889999999999888776
Q ss_pred chhhHHhhHhhHHHHHHHhhcCCcHHH
Q 000201 1192 GKSQLLSFMDELIPTIRTALCDSILEV 1218 (1866)
Q Consensus 1192 ~~~~l~~~l~~ll~~l~~~L~d~~~~v 1218 (1866)
.+ .+-+-+..+...+.+.+.|.+++.
T Consensus 656 t~-~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 656 TE-QLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred cc-ccCchHHHHHHHHHHHhhhhhhHH
Confidence 54 334455666666777777776553
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.36 E-value=0.0032 Score=74.72 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=127.0
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccCCcchhhh
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPSLAL 813 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~~~~~l~~ 813 (1866)
.++=.+.++.++.++..|.....+++.+.....+ +--....+++-+....+ .++ .|+..|.. .+++.....
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted--vlm~tssiMkD~~~g~~~~~kp~AiRsL~~-----Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED--VLMGTSSIMKDLNGGVPDDVKPMAIRSLFS-----VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh--hhHHHHHHHHhhccCCccccccHHHHHHHH-----hcCcchhhh
Confidence 4556678899999999999999999888764432 21223334444433322 233 46665543 122222222
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH---------hHHHHHHHHHHHHH
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP---------EVRSVAARAIGSLI 884 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~---------~vR~~a~~aL~~l~ 884 (1866)
+-..+.+++-++.+.+|..|.-.-..+.. ........+....-.++..+-+.|+. ..-..-..++|.+.
T Consensus 138 ~er~l~~a~Vs~~~a~~saalv~aYhLlp--~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLy 215 (898)
T COG5240 138 FERYLNQAFVSTSMARRSAALVVAYHLLP--NNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLY 215 (898)
T ss_pred HHHHhhhhccccchhhhhhHHHHhhhhcc--ccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHH
Confidence 22333344445555555543322221111 01012222333333333332221110 00011233444444
Q ss_pred hhcCCCChhhHHHHHHHhcccCCCHHHHHHH---HHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhh
Q 000201 885 RGMGEENFPDLVSWLLDALKSDNSNVERSGA---AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 961 (1866)
Q Consensus 885 ~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a---~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~ 961 (1866)
..-..+.+ .+-.+++.+.+..+-....+- .....++... ..+.+..+.|.+-.++.+.-..|--.+...+..++
T Consensus 216 q~kr~dkm--a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~ 292 (898)
T COG5240 216 QSKRTDKM--AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALS 292 (898)
T ss_pred HHhcccHH--HHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 42221211 111222222221110000000 0111111111 12244566677777777654444444444555544
Q ss_pred hh-hchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHH
Q 000201 962 RS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1029 (1866)
Q Consensus 962 ~~-~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR 1029 (1866)
.. .|.+ ++.+.+..+...++...-..|.+|++.+..+...++.+ +..--+.++..+.|.|-.+-
T Consensus 293 ~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~evEsLIsd~Nr~Is 357 (898)
T COG5240 293 EENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNKEVESLISDENRTIS 357 (898)
T ss_pred HhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecChhHHHHhhcccccch
Confidence 33 3554 45566666777777777778888888888877665543 22223455555656554443
No 81
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.33 E-value=1e-05 Score=104.39 Aligned_cols=198 Identities=21% Similarity=0.219 Sum_probs=162.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
-++.-+.+++|+.|..|+.++...+...+.+ .-...+++-.+......+.|..+-.-++.+++.|+..++..|.+|...
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 3444446889999999999999999876511 112345666777777777777888889999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh--HHhhhc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLP 735 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~--~~~~l~ 735 (1866)
++|.++..++|....+|+++..+++.+.. ...+..+.+.+.+.+.+.+++.|.....+++......+.. ....+.
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~ 413 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILN---STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK 413 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence 99999999999999999999999999987 3445788999999999999999999999999888765421 233456
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 779 (1866)
.++|.+....+|.+..||.+|..+++.+.+.++.+.+..++..+
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 88999999999999999999999999999988876555444433
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.002 Score=80.55 Aligned_cols=428 Identities=17% Similarity=0.151 Sum_probs=253.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcch
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 616 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~i 616 (1866)
-.+..+++...++++.+|..+...+..+- .+...+++-.-+....+++++-+|+.|+.+.+.+-. .+++.....++
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CChhhccccch
Confidence 45677888888999888887766543221 122333333333444567788899999999988765 34555556688
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc-hhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV 693 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~-~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v 693 (1866)
++.|.+++.++ ++.+-..|+.++..+.+.-.... -....+++..++..+.+-+.=-+ ...+..+....+.. ..
T Consensus 162 ~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea 237 (734)
T KOG1061|consen 162 VDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREA 237 (734)
T ss_pred hHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhH
Confidence 99999998854 56777778888888887654311 11223344444443332211111 12223333333332 23
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
..++..+...|.+.+..+-.+++.++-......+......+..+-|.++.++.- .++++..+..-+.-+.....+ .+.
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~-~~~ 315 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPE-ILK 315 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChH-HHH
Confidence 567777777888888888888888888777766664444455666666655554 448777777666655543221 112
Q ss_pred hHHHHHHHhhCCCChhHH----HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcc
Q 000201 774 SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr----~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~ 849 (1866)
.-+..+.=..+||- +++ +++..+.. ...++.+++.+...-.+-+.+.-+++..++|+++....+.
T Consensus 316 ~~~~~Ff~kynDPi-YvK~eKleil~~la~--------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-- 384 (734)
T KOG1061|consen 316 VEIKVFFCKYNDPI-YVKLEKLEILIELAN--------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-- 384 (734)
T ss_pred hHhHeeeeecCCch-hhHHHHHHHHHHHhh--------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--
Confidence 22222222224553 222 33333332 2345667777777777778888889999999998754331
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
..+++.|.+++.-....+-..+...+..+.+..+.. +..+++.+...+.+-.++..|...++-+|+-+..+..
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~-~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~- 457 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK-YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN- 457 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc-hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-
Confidence 457788888887555555556677777777766544 3667777766666655565677777777876665543
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh-ccC-CChHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGA 997 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~-l~d-~~~~VR~~a~~a 997 (1866)
..+++..++++..+....|+-..+.+...+....+..- +..+..++.. ..| .++++|+.++--
T Consensus 458 -a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 458 -ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET----QELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred -HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHhhhhccccChhhhhhHHHH
Confidence 24566667777777766666544444333333333222 2233333333 233 356888876543
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0055 Score=75.21 Aligned_cols=334 Identities=16% Similarity=0.099 Sum_probs=205.5
Q ss_pred ccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 000201 1466 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALK 1545 (1866)
Q Consensus 1466 ~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~ 1545 (1866)
.+.+-+...+.++-+-+|..|...+-.+.... +++++|.++. |..-|.+. +++|..+|...+++|.++-|..+.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~Fpr----L~EkLeDp-Dp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPR----LVEKLEDP-DPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHH----HHHhccCC-CchHHHHHHHHHHHHHhhCCcccc
Confidence 35556666677778889999999999999888 7788877654 46777774 789999999999999999998766
Q ss_pred CchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHHHh---cCcc
Q 000201 1546 PFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKH---AGKS 1620 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~-~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~---~~~~ 1620 (1866)
++.| .|.+.+.+. |-++-....+.+|.|.-+.||+. ++++.|.+.+.++. ......+|+..|+.. .|..
T Consensus 218 ~LAP----~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~--AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 218 QLAP----LFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTV--AMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred cccH----HHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhH--HHHHHHHHHHHheeehhccCCC
Confidence 6555 566666665 77888888999999988888864 57777877776432 122333444444433 1221
Q ss_pred ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1621 l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
=..+....+...|..++.++|...+-.+.-+++.+++..|. .+...-+-++.-+.+.+...|..+...|..++..-
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk--- 367 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK--- 367 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh---
Confidence 22466778888888889999999999999999999998885 33333333445556667777776666666555442
Q ss_pred ccCCcchHHHHHHHHhhhcCC-ChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhh--cCCCCHHHHHHHHHHH
Q 000201 1701 ISMSPLFLSILDRLKSSLKDE-KFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSA--LHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~~~-~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~~~vR~~a~~~l 1777 (1866)
-..+++..+....... ....|.-- +..++.-|....+.+......++..++.. +.+ ....+..+.+.+
T Consensus 368 -----Nl~eIVk~LM~~~~~ae~t~yrdel---l~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~-~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 368 -----NLMEIVKTLMKHVEKAEGTNYRDEL---LTRIISICSQSNYQYITDFEWYLSVLVELARLEG-TRHGSLIAEQII 438 (877)
T ss_pred -----hHHHHHHHHHHHHHhccchhHHHHH---HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc-cchhhHHHHHHH
Confidence 3445666555544433 33455432 22233333322221111222333333321 222 445556666666
Q ss_pred HHHHhhCcchhhhhHhhHHHHHHh-----h-h--ccCcchhhhhHHHHHHHhhcccc
Q 000201 1778 KSVAKANPSAIMVHVALFGPALAE-----C-L--KDGSTPVRLAAERCAVHAFQLTR 1826 (1866)
Q Consensus 1778 ~~~a~~~~~~~~~~l~~l~p~l~~-----~-~--~~~~~~vk~aae~a~~~l~~~~~ 1826 (1866)
....+.. .++++.-..+-.++. . . ...-.+|=.||-.|+.......+
T Consensus 439 Dv~iRV~--~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 439 DVAIRVP--SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHheech--hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 6666643 344443222222211 1 1 11224666777777666555443
No 84
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.032 Score=69.56 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHc-----CCCCHHHHHHHH-HHHHHHHHhhcHh-hH-----HhHHHHH
Q 000201 633 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF-----SDQVVAVREAAE-CAARAMMSQLSAQ-GV-----KLVLPSL 700 (1866)
Q Consensus 633 r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~-----~D~~~~VR~~a~-~al~~i~~~l~~~-~v-----~~llp~L 700 (1866)
|-.|-..|..+.+..+..+.|++..++.....+. +|-+.-+++.|. .+.+.-+..++.. .+ ..++|.+
T Consensus 414 RPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl 493 (978)
T KOG1993|consen 414 RPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPEL 493 (978)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHh
Confidence 3334455555555555545555444443333333 333445555553 3333333323221 11 3445544
Q ss_pred HhhcCCCChh-hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhcc--chhHHhHH
Q 000201 701 LKGLEDKAWR-TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIK--NPEIASLV 776 (1866)
Q Consensus 701 ~~~L~~~~w~-~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~--~~~i~~lv 776 (1866)
- .+..+.| .|+-.+.++|..... +.....-+.+...++++++|. +--||-++.+++.-...... ...+.+++
T Consensus 494 ~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~l 569 (978)
T KOG1993|consen 494 A--NDHGNSRIIRRRVAWILGQWVSV--QQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYL 569 (978)
T ss_pred h--hcccchhHHHHHHHHHHhhhhhe--echHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhH
Confidence 4 2233333 356677888877762 112222345667788899998 56678899999988776442 11222222
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 777 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 777 ~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
|.+... +.+.++. ..-++|......++.+...++. .+.||..
T Consensus 570 enlf~~-----------------------------------lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e--~I~P~~~ 612 (978)
T KOG1993|consen 570 ENLFVL-----------------------------------LFKLLKAVEECDTKTSVLNLLSTLIERVSE--HIAPYAS 612 (978)
T ss_pred HHHHHH-----------------------------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 322211 1111111 1235666766777777765543 4557777
Q ss_pred hhhHHHHHHhc--CCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 856 LLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 856 ~ll~~L~~~l~--d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.+++.+-.+.. ...+-.|.+...++..++.++|.+
T Consensus 613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~q 649 (978)
T KOG1993|consen 613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQ 649 (978)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccC
Confidence 77766666554 356778889999999999999976
No 85
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0029 Score=77.10 Aligned_cols=457 Identities=18% Similarity=0.180 Sum_probs=250.2
Q ss_pred HhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-hccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH
Q 000201 1118 EIMPVLMNTLISSLASSSSERRQVAGRALGELVRK-LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1196 (1866)
Q Consensus 1118 ~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~-~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l 1196 (1866)
+++..++..+.+-+.++++..-..|+.|++.+-.. +.+.+.+++-..|..+ +...-+|+.++.++-.+.... |+.+
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~--~~~~~vkqkaALclL~L~r~s-pDl~ 183 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSG--SSMDYVKQKAALCLLRLFRKS-PDLV 183 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCC--cchHHHHHHHHHHHHHHHhcC-cccc
Confidence 44556666777777888888888888888866432 1222334444444432 344568888888888887664 3222
Q ss_pred HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchh
Q 000201 1197 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 1276 (1866)
Q Consensus 1197 ~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~ 1276 (1866)
. ...-...+...|.|.+-.|--++...+..+.+...+..-. .+| .|+..+..++.........+
T Consensus 184 ~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-~~~-------------~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 184 N--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-CLP-------------LAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred C--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-hHH-------------HHHHHHHHHHhhcccchhhc
Confidence 1 1233455667788888888888777777777655443222 222 12222333222111111111
Q ss_pred hhhhhhcCCccchhHHHHHHHHHHh---CCCchhhHhhHHHHHHHhcCCC--CHHH-----HHHHHHHHhHhhhccch--
Q 000201 1277 ILPKLVHLPLSAFNAHALGALAEVA---GPGLNFHLGTILPALLSAMGDD--DMDV-----QSLAKEAAETVTLVIDE-- 1344 (1866)
Q Consensus 1277 Lip~L~~~~~~~~~~~al~~La~~~---g~~l~~~l~~il~~L~~~l~~~--~~~v-----r~~a~~~l~~l~~~~~~-- 1344 (1866)
....+-.+-+ ..+++..|...- .+.-...+..++..+++...++ ...+ +.+.+--.-.++..++.
T Consensus 248 Tyy~vP~PWL---~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~ 324 (938)
T KOG1077|consen 248 TYYFVPAPWL---QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP 324 (938)
T ss_pred eeecCCChHH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH
Confidence 0000000000 011111111100 0111223344444444444321 1111 22222111222333443
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcCCc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-DSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
+-+...+..|...+.+....+|..++..+..++.... ..+.+..-...++..++ +.|..+|..|...|-.++...
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~-- 400 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS-- 400 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh--
Confidence 3366777777788888888888888888887765421 11222233555666677 788888888887777765422
Q ss_pred chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhh
Q 000201 1424 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 1503 (1866)
Q Consensus 1424 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~ 1503 (1866)
....|+.-+++.+.+.+...|+....-++-+++.. ..++.
T Consensus 401 ---------------------------------------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy-AtDy~ 440 (938)
T KOG1077|consen 401 ---------------------------------------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKY-ATDYS 440 (938)
T ss_pred ---------------------------------------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCcc
Confidence 22334555566677777888888888888888776 45566
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH---H
Q 000201 1504 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL---S 1578 (1866)
Q Consensus 1504 ~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L---~ 1578 (1866)
=|+..+ -.|+++.++..+.+|=.-.++... -..++.+|. -..+.+.|+.+ |+.+-..++..||.. +
T Consensus 441 WyVdvi-LqLiriagd~vsdeVW~RvvQiVv-----Nnedlq~ya---ak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LI 511 (938)
T KOG1077|consen 441 WYVDVI-LQLIRIAGDYVSDEVWYRVVQIVV-----NNEDLQGYA---AKRLFEYLQKPACHENMVKVGGYILGEFGNLI 511 (938)
T ss_pred hhHHHH-HHHHHHhcccccHHHHHHhheeEe-----cchhhhHHH---HHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 565544 457888887655554322222111 011122221 23455566666 788888888888766 3
Q ss_pred hccCChhh--HHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 1579 ALSTRVDP--LVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGI 1654 (1866)
Q Consensus 1579 ~~~~~~~~--~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~ 1654 (1866)
.-.|+..+ .+.-+.+.+....+..|...+..+-.++... ++..+.|+.+.......-|.+++..+.+-+.-
T Consensus 512 a~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-----PEi~~~v~~vFq~~~n~~D~ElQqRa~EYLql 584 (938)
T KOG1077|consen 512 ADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-----PEIKSNVQKVFQLYSNLIDVELQQRAVEYLQL 584 (938)
T ss_pred cCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-----hhhhHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 33455443 4555666666556666777777666666543 45667777777666566677887777776653
No 86
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.075 Score=69.64 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=111.9
Q ss_pred CccccHHHHHHhhc----cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000201 1463 ALQPLLPIFLQGLI----SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR 1538 (1866)
Q Consensus 1463 ~l~~ilp~l~~~L~----~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~ 1538 (1866)
-+..+.|++.++.. .++++.+..|..+++.++--. . .|...-.+.|+.++....++-+|..+.-++|.+.-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a----~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-A----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-H----HHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 44567888888874 467999999999999998643 2 23344456678888766678899999999999998
Q ss_pred hcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhc
Q 000201 1539 KGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHA 1617 (1866)
Q Consensus 1539 ~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~-~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~ 1617 (1866)
+.+..+.|+.+ .+...|.|++..||..|...|.+|+-- .-++..++.++.-.+.+++.+++..+=.-.+++-++.
T Consensus 991 ~fpnlie~~T~----~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 991 RFPNLIEPWTE----HLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hcccccchhhH----HHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 88876666554 556678999999999999999999532 2345567889988899999988887776777765544
No 87
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.012 Score=71.92 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-HHhHHHHHHhhcCCCChhhHHHH
Q 000201 637 LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSS 715 (1866)
Q Consensus 637 l~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v~~llp~L~~~L~~~~w~~r~~a 715 (1866)
+.|+..++..-++.+..-+..=+|.++ .-++..+.||+.++-|+-++.+..++-. .......++..|+|.+.++-.++
T Consensus 129 ~LAL~~I~niG~re~~ea~~~DI~KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~ 207 (938)
T KOG1077|consen 129 CLALHCIANIGSREMAEAFADDIPKLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAA 207 (938)
T ss_pred HHHHHHHHhhccHhHHHHhhhhhHHHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeeh
Confidence 334444444444333333333334443 3467789999999999999988754322 24667778888999999999999
Q ss_pred HHHHHHHHhhChhhHHhhhcchhHHHhhhccC-------------CChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHh
Q 000201 716 VQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-------------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMG 782 (1866)
Q Consensus 716 ~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D-------------~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~ 782 (1866)
..++..++...|+....+++.-+..+...... +.|......++.|..+ ...
T Consensus 208 ~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~--------------- 271 (938)
T KOG1077|consen 208 TSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTP--------------- 271 (938)
T ss_pred HHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCC---------------
Confidence 99999999998888777776666555543321 1233333333333222 001
Q ss_pred hCCCChhHH----HHHHHHHhccccccCCcchhhhHHHHHHHhhcC----CCH---HHHHHH-HHHHHHHhhhcCCCcch
Q 000201 783 LTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE----RSA---ETKKKA-AQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 783 l~d~~~~vr----~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d----~~~---~vr~~a-~~~l~~l~~~l~~~~~l 850 (1866)
.|| .+| ++++.+.+ ..++ .+. ..+... .+++ +++..+...
T Consensus 272 -~D~--~~r~~l~evl~~iLn---------------------k~~~~~~~k~vq~~na~naVLFeaI-~l~~h~D~e--- 323 (938)
T KOG1077|consen 272 -EDP--STRARLNEVLERILN---------------------KAQEPPKSKKVQHSNAKNAVLFEAI-SLAIHLDSE--- 323 (938)
T ss_pred -CCc--hHHHHHHHHHHHHHh---------------------ccccCccccchHhhhhHHHHHHHHH-HHHHHcCCc---
Confidence 111 122 22222221 1110 000 111111 1122 222222221
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
...+...+..|.+++.+....+|..+...+..++..-.. +....-...++..|+.+.+..+|+.+++-|-.+|. .+
T Consensus 324 ~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~ 400 (938)
T KOG1077|consen 324 PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VS 400 (938)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hh
Confidence 223455667777778888889998888888777765111 12233455677778877777799999888866654 33
Q ss_pred HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHH
Q 000201 930 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 979 (1866)
Q Consensus 930 ~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~l 979 (1866)
..+.++..+++.+...++.+|+....=..-|++.+..++.=|+..+++.+
T Consensus 401 Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 401 NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 45678888888888889999998777777788877777766776666544
No 88
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.13 E-value=0.00013 Score=84.98 Aligned_cols=199 Identities=19% Similarity=0.150 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
...++..++..+-.+.....|.+|...|-.+...-+...+. ...|+..+.+.+.+..+...+..|+..++.+++.-+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 45677777888877766788999999888877643333332 1256667777778767788899999999999988777
Q ss_pred CchhcHHhHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh-
Q 000201 650 LFEPYVIQMLPLLLVAFSDQVVAVR-EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 727 (1866)
Q Consensus 650 ~~~p~v~~llp~ll~~~~D~~~~VR-~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~- 727 (1866)
.|..+....+-.++...+|.++.|- .++.+|+..+++..+-..+..+.|.++. .+...-..++..+..+++..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 7888888888888888899877554 4556667777777777777888777766 444455566778888888765
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+.+...++++.|.+++..+.+...||+.|+.||-.+...++.+++.+
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 45778899999999999999999999999999999998887444433
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00011 Score=88.46 Aligned_cols=226 Identities=20% Similarity=0.187 Sum_probs=150.7
Q ss_pred HHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc---------c
Q 000201 938 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---------T 1008 (1866)
Q Consensus 938 l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---------~ 1008 (1866)
+.....+.++.||..|+..+-.|.. |.. .-..+.....+.++|++++||.+|++.+....+.++. +
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--ccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 3444567788999999988887777 332 1233556677889999999999999988877766521 1
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC----------------------------------cccccccC
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT----------------------------------SGKALLEG 1054 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~----------------------------------~~~~~~~~ 1054 (1866)
..+.....+.+.+.|.+|.||..+.+++|.+=. ++.. +||-+-.+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 344556677888899999999999999987521 1100 01111000
Q ss_pred C-CCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC
Q 000201 1055 G-SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1133 (1866)
Q Consensus 1055 ~-~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~ 1133 (1866)
. +|+++... ..++.. | ...++..++.|+-.+||.+|+..+..++.+.|.. -...+..|+..+++
T Consensus 357 vpsee~d~~~----~siI~s-G------ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfND 421 (823)
T KOG2259|consen 357 VPSEEDDEEE----ESIIPS-G------ACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFND 421 (823)
T ss_pred Cchhhccccc----cccccc-c------ccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhcc
Confidence 0 00000000 001110 0 1223334577888999999999999999988853 34556777778899
Q ss_pred CCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHH
Q 000201 1134 SSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1186 (1866)
Q Consensus 1134 ~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~ 1186 (1866)
..+.+|..|..+|..+...+ .+-.+.++.+...+.|.++++|.+.-..|+.
T Consensus 422 E~~~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL--AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999988762 3445666777777888899999877665543
No 90
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.02 E-value=0.11 Score=65.82 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=90.5
Q ss_pred chHHHHHHHHhhhc-CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000201 1706 LFLSILDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 1784 (1866)
Q Consensus 1706 ~~~~~~~~l~~~~~-~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~ 1784 (1866)
+....+|.+.+-+. ++...+|.+.+.|||+++.+.. .-.+..++.+...|.|+++-|||-++..+.++-+..
T Consensus 965 LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-------am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~ 1037 (1529)
T KOG0413|consen 965 LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-------AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG 1037 (1529)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-------HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 44556776665544 5567999999999999988753 245678889999999999999999999999888764
Q ss_pred cchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhcccccchhHHHHHHHh
Q 000201 1785 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838 (1866)
Q Consensus 1785 ~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~ 1838 (1866)
. ++=.-...+..+. ..-|.+..+|.-|+-+|.++++..+..=.++.|-++|
T Consensus 1038 ~--vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1038 I--VKWNGELFIRFML-ALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred h--hhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 2 2211122333333 3458889999999999999999876543456777776
No 91
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.03 Score=69.99 Aligned_cols=285 Identities=17% Similarity=0.152 Sum_probs=153.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
..+.|.+.+.+.+....+-..++..+.++.... ..++.| -+..+..++..+.+.+|-.|.+.|..++...+...
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc
Confidence 346677778888777788888888887776532 234444 56677778889999999999999999998765431
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
...-..| +.+-++. .|.-+.-++..+.+.......+.++..+-....+-+.+.+.....++..++..++..-..+
T Consensus 318 -~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 318 -TVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred -cccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 1111112 1122222 3555566666666655555666777666666666566666666777777777766533222
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcc
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1048 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~ 1048 (1866)
++-+...+.+ +..-+-+.+..+++..++...+.. ....+...+++.. + +.-+...++-+-...+...
T Consensus 393 m~FL~~~Lr~---eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce----~--~~i~~rILhlLG~EgP~a~- 462 (865)
T KOG1078|consen 393 MNFLSNMLRE---EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE----F--TQIAVRILHLLGKEGPKAP- 462 (865)
T ss_pred HHHHHHHHHh---ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc----c--hHHHHHHHHHHhccCCCCC-
Confidence 2222111211 112223334445544444321110 0111111122111 1 1111111111111100000
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHH
Q 000201 1049 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1128 (1866)
Q Consensus 1049 ~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~ 1128 (1866)
.-...+..+|...-=.+..||.+|+.++..+..+.+. ..+.+...+.
T Consensus 463 -----------------------------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllk 509 (865)
T KOG1078|consen 463 -----------------------------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLK 509 (865)
T ss_pred -----------------------------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHH
Confidence 0001111222111123567999999999988854432 2345566677
Q ss_pred HhhcCCCHHHHHHHHHHHHHHH
Q 000201 1129 SSLASSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1129 ~~l~~~~~~~R~~A~~~L~~lv 1150 (1866)
+++.+++.++|..|...|..+-
T Consensus 510 Rc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 510 RCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhcCchHHHHHHHHHHHHHhh
Confidence 8889999999999888887665
No 92
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.99 E-value=7.4e-06 Score=69.56 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHH
Q 000201 709 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 763 (1866)
Q Consensus 709 w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l 763 (1866)
|++|.+|+.+||.++...++.+..+++.++|.+..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999864
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.98 E-value=0.0013 Score=80.53 Aligned_cols=247 Identities=23% Similarity=0.242 Sum_probs=156.8
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
...+.+...+.|++..||..+...++.+ +.+..+|.+...+.+.++.+|..++.+||.+-. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4567788889999999999998885544 336789999999999999999999998886553 34
Q ss_pred hhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC------------hhHH-HHHHHHHhccc
Q 000201 737 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 802 (1866)
Q Consensus 737 iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~------------~~vr-~al~~L~~~~~ 802 (1866)
.++.+.+++. |.+..||..|.++|+.+...- .++.++..+.++. ..+| .+...+...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~-- 176 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL-- 176 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc--
Confidence 5566677776 899999999999999887422 1344444554443 1234 233333321
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
......+.+...+.+....+|..+...++.+.... ..+.+.+...+.++++.+|..++.++|.
T Consensus 177 -------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 177 -------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred -------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 11234667777888888888888888888776521 3466777888888889998888777765
Q ss_pred HHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhh
Q 000201 883 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 961 (1866)
Q Consensus 883 l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~ 961 (1866)
+-. ....+.+...+.+.... .+......++ +. ........+.....+....+|..+...++.+.
T Consensus 240 ~~~-------~~~~~~l~~~l~~~~~~-~~~~~~~~~~------~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 240 IGD-------EEAVDALAKALEDEDVI-LALLAAAALG------AL-DLAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred cCc-------chhHHHHHHHHhccchH-HHHHHHHHhc------cc-CchhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 432 33444455555443322 3333332222 11 11122233344445555666655555554443
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.98 E-value=0.016 Score=75.14 Aligned_cols=354 Identities=15% Similarity=0.159 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-hH--HhHHHHHHhhcCCCChhh
Q 000201 635 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 635 ~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-~v--~~llp~L~~~L~~~~w~~ 711 (1866)
.+...+..+++...-...-.-..+++.|..++...+..+.-.+...+..+.-.-... .+ ..++|.|...+.+++...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 345556666665432111122367888888888888888888888888775322221 12 568999999999999999
Q ss_pred HHHHHHHHHHHHhhChh--hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-h--HHhHHHHHHHhhC-C
Q 000201 712 KQSSVQLLGAMAYCAPQ--QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E--IASLVPTLLMGLT-D 785 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~--~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~--i~~lv~~L~~~l~-d 785 (1866)
+..++.+|.+++....- ++.. ..++|.+..++.|+ ..|..|...|..++..-... . ....+|.+.+.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 99999999999975332 2222 37889999999875 45666777777776422211 1 1456777777653 3
Q ss_pred CChhHH-HHHHHHHhccccccCCcch-hhhHHHHH-HHhhcCCCHHHHHHHHHHHHHHhhhcCCC-cchhhhHhhhhHHH
Q 000201 786 PNDHTK-YSLDILLQTTFVNTVDAPS-LALLVPIV-HRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEV 861 (1866)
Q Consensus 786 ~~~~vr-~al~~L~~~~~~~~~~~~~-l~~l~p~L-~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-~~l~~~~~~ll~~L 861 (1866)
+++.+. +.+..+.+.+.......-. -...++.| .+.++.+++ .....+-|++..-+.. ..+.+|+.. +
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~----L 495 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGD----L 495 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHH----H
Confidence 444333 2233333211111000000 00112222 233333332 2334666776532111 122333333 3
Q ss_pred HHHhcCCCHhHHHHHHHHHHHHHhhcCCC-----Ch--hhHHHHHHHhcccCCC-HHHHHHHHHHHHHHHHHhChh-HH-
Q 000201 862 KKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NF--PDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTV-YF- 931 (1866)
Q Consensus 862 ~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-----~~--~~l~~~L~~~L~~~~~-~~~R~~a~~~L~~l~~~~g~~-~l- 931 (1866)
...+...+ -....+.++|.++...-++ .+ ..++||+.+.|..... ......++..+|.++..-... .+
T Consensus 496 ~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~ 573 (708)
T PF05804_consen 496 AKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLA 573 (708)
T ss_pred HHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 33344332 2256778888888743222 12 2589999999875432 335556666677665421111 11
Q ss_pred -HHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 932 -EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 932 -~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
..+++.+++.+++. +.+.--..+.+|..+..+-. .....+ .++...++..+.|.++.||..|-.++..+..
T Consensus 574 ~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 574 KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35667777766543 55555556666666665522 111121 4577888899999999999998888877664
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.0076 Score=73.33 Aligned_cols=258 Identities=19% Similarity=0.124 Sum_probs=137.4
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-Ch-h-----
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GT-V----- 929 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g~-~----- 929 (1866)
+..++..+..|.++.||..|+.++-.+.+ |-+.-..+.....+.+.++. ..+|..|.+.+.-..... ++ +
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 44446666677777777777777777666 32222334444444444433 346777766655444433 11 1
Q ss_pred --HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH-H-------------------------------
Q 000201 930 --YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-V------------------------------- 975 (1866)
Q Consensus 930 --~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~-i------------------------------- 975 (1866)
..+..+..+-...++....+|-.+..+||.+-.....-+...+++ +
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 223444455555666667777766666665544333222111111 1
Q ss_pred -------------------HHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHH
Q 000201 976 -------------------LPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL 1036 (1866)
Q Consensus 976 -------------------l~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll 1036 (1866)
...++.++.|+..+||.+|..++..+...-+..+.. -+..+.+.+.|+...+|..++..+
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-aldfLvDMfNDE~~~VRL~ai~aL 434 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-ALDFLVDMFNDEIEVVRLKAIFAL 434 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccHHHHHHHHHHHHH
Confidence 122333444555566666666666655432221111 223334444555555666666555
Q ss_pred HHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1037 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1037 ~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
..+..++ ..+.+.+..+..++.|.+..+|++.-++|+..--..
T Consensus 435 ~~Is~~l---------------------------------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d---- 477 (823)
T KOG2259|consen 435 TMISVHL---------------------------------AIREEQLRQILESLEDRSVDVREALRELLKNARVSD---- 477 (823)
T ss_pred HHHHHHh---------------------------------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc----
Confidence 5543221 123455666667788999999999998887532111
Q ss_pred HHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc
Q 000201 1117 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1156 (1866)
Q Consensus 1117 ~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~ 1156 (1866)
.+.+.-++..+++.++ .-+.-|.....|++.+.++.+..
T Consensus 478 ~~~i~m~v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 478 LECIDMCVAHLLKNLG-KYPQDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHHHHHhh-hCCCCcHHHHHHHHHHhccChhh
Confidence 2344455555555554 23444666788888877665443
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.97 E-value=0.00085 Score=81.91 Aligned_cols=238 Identities=18% Similarity=0.136 Sum_probs=151.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 696 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~l 696 (1866)
++.+...+....+...+..+..++. .+. .+ ..+..++..+.|+++.||..+..+|+.+-. ...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~-----~~~--~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a 118 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL-----AQE--DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQA 118 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh-----ccC--Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHH
Confidence 4556666644444455544444321 111 11 136778888999999999999999986532 456
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 776 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 776 (1866)
.+.|...++++++.+|..++.+++..-. .-.+.+...++|.++.||..|+.+|+.+... ..+
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~ 180 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-------LSE 180 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------cch
Confidence 6778888899999999998888775221 2345677788999999999999999988642 345
Q ss_pred HHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 777 PTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 777 ~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
|.|...+.|+++.+| .++..+....- ....+.+.....+.....+..+..++... +. +
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al~~lG~---------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~--------~ 239 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAGLLAGS---------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG--------P 239 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc--------h
Confidence 566677888888888 45555543111 12233444433444444544444444333 22 2
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
..++.|..+++++. +|..++.++|.+.. +..+++|+..+.++. .+..+.+.++.|
T Consensus 240 ~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 240 DAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred hHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 46777777887754 88888888886543 457777777775432 566666666544
No 97
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0024 Score=75.45 Aligned_cols=157 Identities=19% Similarity=0.240 Sum_probs=113.0
Q ss_pred hhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
+.+..++..+.....||+..+|..|+++|+..+...+.+ +.+.++..++..|-++.+..+...++.+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 556667777777788999999999999999999976554 55667777777777766666888888888766655433
Q ss_pred h----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH-HHHHH---HHHHhhccCCChHHHHHHHHHHHH
Q 000201 929 V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVL---PAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 929 ~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~-l~~il---~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
. ++-++.-.+.....+.++.+|.+++.+|+.++...|...+.+ .+++. .+++-.+.|+++.|-.++-..+..
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 3 444555566677788899999999999999999988544333 33333 344556789999887666655555
Q ss_pred HHHhhccc
Q 000201 1001 LVEHYATT 1008 (1866)
Q Consensus 1001 i~~~~~~~ 1008 (1866)
+..++..+
T Consensus 414 c~p~l~rk 421 (533)
T KOG2032|consen 414 CYPNLVRK 421 (533)
T ss_pred cCchhHHH
Confidence 55554443
No 98
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.088 Score=67.82 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=123.0
Q ss_pred HHhh-cCCCChhhHHHHHH-HHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 700 LLKG-LEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 700 L~~~-L~~~~w~~r~~a~~-~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
+-.+ +.+++-+.|..|+. .|..|..+- .+ +.++|-+++.....+.++++-.---|..+++.-+ .+.--.++
T Consensus 23 ~~sg~l~s~n~~~kidAmK~iIa~M~~G~--dm----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavN 95 (757)
T COG5096 23 LSSGRLESSNDYKKIDAMKKIIAQMSLGE--DM----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVN 95 (757)
T ss_pred hccccccccChHHHHHHHHHHHHHHhcCC--Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHH
Confidence 3344 67777777777664 555666643 34 4555555555556679999999998998887543 34456788
Q ss_pred HHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhh
Q 000201 778 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 856 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ 856 (1866)
.+.+-++||++.+| -|+..+.... +...+..+++.+.+.++++++.||+.|+-++..+... ++ + -|.+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~-~--l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DK-D--LYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CH-h--hhhcc
Confidence 99999999999999 4777776522 2345678899999999999999999999999999873 21 1 12333
Q ss_pred -hhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 857 -LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 857 -ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
....+..++.|.+|.|-..|..++..+...
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566677778899999988888877776654
No 99
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.14 Score=64.14 Aligned_cols=364 Identities=18% Similarity=0.215 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..+.++.+.+.+-++.-...||.|+.+|..+.+....... ..+ |+.+.+.+ .|-.|+..-. .++..++......
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vg-a~G-mk~li~vL~~D~~D~E~ik---~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVG-AQG-MKPLIQVLQRDYMDPEIIK---YALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH-Hcc-cHHHHHHHhhccCCHHHHH---HHHHHHHHHHhcC
Confidence 5678888899888877788999999999999986633222 122 23333333 3333332222 1222222111100
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
=.|. -+.|+. .+-+...|....+... +..+..++..++..++.+|..++++|.++..+-|.++
T Consensus 95 d~~~----------v~dds~-qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~ 157 (970)
T KOG0946|consen 95 DSPE----------VMDDST-QSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTEL 157 (970)
T ss_pred cchh----------hcccch-hhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHH
Confidence 0000 011221 3333444444444331 3456677888889999999999999999999988765
Q ss_pred Hh---hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCC-----hhHHHHHHHHH
Q 000201 731 SQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPN-----DHTKYSLDILL 798 (1866)
Q Consensus 731 ~~---~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~-----~~vr~al~~L~ 798 (1866)
.. .+|.-+..++.+|.|++.-+|..+.--|..+.+..++- .++.++..|...+.... --+.+|+..+.
T Consensus 158 q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~ 237 (970)
T KOG0946|consen 158 QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLN 237 (970)
T ss_pred HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 44 45777888999999999999999999999888644321 22456667777765432 12346776655
Q ss_pred hc---------cccccCCcchhhhHHHHHHHhh-cCCCHHHHHH-----HHHHHHHHhhhcCCCcch------hhhHhhh
Q 000201 799 QT---------TFVNTVDAPSLALLVPIVHRGL-RERSAETKKK-----AAQIVGNMCSLVTEPKDM------IPYIGLL 857 (1866)
Q Consensus 799 ~~---------~~~~~~~~~~l~~l~p~L~~~l-~d~~~~vr~~-----a~~~l~~l~~~l~~~~~l------~~~~~~l 857 (1866)
.. -|-..-.-|.+..++|.+.-+= +...|...+- +.+++..+..- +.+... .-....+
T Consensus 238 NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~l 316 (970)
T KOG0946|consen 238 NLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHL 316 (970)
T ss_pred HHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcch
Confidence 41 1111111233333334433222 1125655443 33444444331 111111 1122346
Q ss_pred hHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcCCC----------Chh----hHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 000201 858 LPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE----------NFP----DLVSWLLDALKSDNSNVERSGAAQGLSE 921 (1866)
Q Consensus 858 l~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g~~----------~~~----~l~~~L~~~L~~~~~~~~R~~a~~~L~~ 921 (1866)
+..|...+-++ ..+|+..+..+++.+++..... +++ .++-.++....+......|++++.++-.
T Consensus 317 l~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 317 LDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 77777777665 4578888877777777643211 122 2333344444444556688888887744
Q ss_pred HHHHhChhHHHHHHHHHHHHhccC-ChhHHhHHHHHHHH
Q 000201 922 VLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKY 959 (1866)
Q Consensus 922 l~~~~g~~~l~~ll~~l~~~l~~~-~~~vR~~al~~l~~ 959 (1866)
..-.- .+--..++..++....+. +..+..+.+.+.+-
T Consensus 397 ~l~dN-~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l 434 (970)
T KOG0946|consen 397 YLYDN-DDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGL 434 (970)
T ss_pred HHhcc-hhhHHHHHHHHhhhhccccccchhhhhHHHHhh
Confidence 33211 011123444444444333 44666666665553
No 100
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.92 E-value=0.0013 Score=80.42 Aligned_cols=239 Identities=16% Similarity=0.020 Sum_probs=144.7
Q ss_pred HHHHHHhhc-CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L-~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
.++.++..+ .+++..++..++..+..... +..+..++..+.|.++.||.++..+|+.+. .+ .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----~~---~ 117 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG----GR---Q 117 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----ch---H
Confidence 445555555 34445555555444431111 123666778888888888888888887653 22 3
Q ss_pred HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 775 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
..+.|...+.+++..+| .++..+.. + ...-.+.+...+++.++.+|..|+..++.+...
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~----r------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA----H------RHDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh----h------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 44556666677777777 34444432 1 011245677778899999999999999887641
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 933 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ 933 (1866)
..++.|...+.|.++.||..|+.+++.+.. +...+.+.........+ .+......++.. |.. .
T Consensus 178 --~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------~~A~~~l~~~~~~~g~~-~~~~l~~~lal~----~~~---~ 240 (410)
T TIGR02270 178 --LSESTLRLYLRDSDPEVRFAALEAGLLAGS-------RLAWGVCRRFQVLEGGP-HRQRLLVLLAVA----GGP---D 240 (410)
T ss_pred --cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHhccCcc-HHHHHHHHHHhC----Cch---h
Confidence 245556677999999999999998866532 12233333322222222 333222222211 332 4
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 000201 934 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 934 ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~ 1002 (1866)
.++.+...++++. +|..++.+++.+.. +..++.++..+.|+. ++..|.+++..|.
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 5556666666543 88888888886643 236677888887654 8888888877765
No 101
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0027 Score=77.74 Aligned_cols=212 Identities=25% Similarity=0.266 Sum_probs=150.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
..+.+.+.+.++ ++..|..+...++.+. -...+|.+...+.|.++.||..+..+++.+.. +.
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 456666777766 6777777766533322 24688999999999999999999997766532 55
Q ss_pred HHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCC------------hHHHHHHHHHHHH
Q 000201 696 VLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH------------PKVQSAGQTALQQ 762 (1866)
Q Consensus 696 llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~------------~~VR~aA~~aL~~ 762 (1866)
.+|.+++.+. +.+|.+|..+...|+.+.... -+..++..++|.. ..+|..+..+|+.
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~ 175 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE 175 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH
Confidence 6777777777 799999999999999776532 1334455566644 2578888888887
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 841 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~ 841 (1866)
++. ...++.+...+.++...+| .+...+....... ..+.+.+...+.+.++.+|..++..++.+.
T Consensus 176 ~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 176 LGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred cCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 764 2345667777778887887 4555555422211 356788899999999999999888877654
Q ss_pred hhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 842 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 842 ~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
. ....+.+...+.+.++.++..+..+.+
T Consensus 242 ~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 242 D------------EEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred c------------chhHHHHHHHHhccchHHHHHHHHHhc
Confidence 3 124566777788888888877766665
No 102
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.023 Score=70.36 Aligned_cols=321 Identities=16% Similarity=0.170 Sum_probs=159.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+.....+-+++|+..||-.+..-+-.+ =.++-+..++|.+...|++....+|+.|+.+++.+.... +.+-+--|++
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~~L~pDapeL 175 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-EHLIPDAPEL 175 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-hhhcCChHHH
Confidence 444556667889999997765533322 234556888888888888888888888888888877752 2222222333
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+..+ +..+.+|.....|.-.|...- |+- .+..+...+. .++..+ +.+..++-.
T Consensus 176 i~~f--L~~e~DpsCkRNAFi~L~~~D-----~Er--Al~Yl~~~id-----------------qi~~~~-~~LqlViVE 228 (948)
T KOG1058|consen 176 IESF--LLTEQDPSCKRNAFLMLFTTD-----PER--ALNYLLSNID-----------------QIPSFN-DSLQLVIVE 228 (948)
T ss_pred HHHH--HHhccCchhHHHHHHHHHhcC-----HHH--HHHHHHhhHh-----------------hccCcc-HHHHHHHHH
Confidence 3222 345666777776665554321 111 1111111110 000000 111122112
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 897 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~ 897 (1866)
+++.....++..|..-.++ +..+|+..++.|+-.|+..+-.+.. .+..+.....
T Consensus 229 ~Irkv~~~~p~~~~~~i~~------------------------i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~ 282 (948)
T KOG1058|consen 229 LIRKVCLANPAEKARYIRC------------------------IYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKAAAS 282 (948)
T ss_pred HHHHHHhcCHHHhhHHHHH------------------------HHHHHhcCCchhhhhhcceEEEccC--CHHHHHHHHH
Confidence 2221111223333222223 3333333333333333222222111 0011111111
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 898 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 898 ~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
.+++.+....+..+..-...-|.++. ......+++++-.++..+.+++-++|..++...-.|...-. +.+++.
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN------vediv~ 355 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN------VEDIVQ 355 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc------HHHHHH
Confidence 12222211111112333333344433 23344677778888888999999999988877666654322 222332
Q ss_pred HHHhhc-------cCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 978 AILDGL-------ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 978 ~ll~~l-------~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
.+.+-+ .|++..-|..-.+++..+.-+|+..+ ..++|.+.+.+.|.|...-...+..+.+.+.+.
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC
Confidence 232222 23445568888888888777775432 235677777777778777666676666666554
No 103
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.031 Score=66.44 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhccc-cc
Q 000201 1081 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGER-VL 1158 (1866)
Q Consensus 1081 ~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~-~~~~R~~A~~~L~~lv~~~~~~-~l 1158 (1866)
.++..+-....|++..+|..|+..++..+...|.....+.+.++..++..|.+. +.++...+..+|..+....... +.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344445556789999999999999999999999999999999999998888754 5688888999999888776543 44
Q ss_pred cchHHH---HhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHH---HHhhcCCcHHHHHH
Q 000201 1159 PSIIPI---LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTI---RTALCDSILEVRES 1221 (1866)
Q Consensus 1159 ~~llp~---L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l---~~~L~d~~~~vr~~ 1221 (1866)
+.++++ +.....+.+++.|.+++..++.+....++..-..|.+++...+ .-.+.|+++.|-.+
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 444444 4445678889999999999998877666543334444444333 33567888876554
No 104
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.15 Score=63.97 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=83.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---ccCChhhHHH
Q 000201 1513 LIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA---LSTRVDPLVG 1589 (1866)
Q Consensus 1513 Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~---~~~~~~~~l~ 1589 (1866)
|.+.+.+.-.-+-|.+++.++..++...+..=.+-+..+-..+..| +.+.-+.+.|+.+.. ..+....|+.
T Consensus 396 L~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 396 LSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhH
Confidence 4444444333456777777777777655543323333333333222 233344445555532 3355667888
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1590 DLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1590 ~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
.+.+.+.-.+..+|.+++.||..+. ++. +...+.|...+..++.+.++++|..|...+..+-
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~---~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFG--AQD---VVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHh--cCC---CCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 8877776667889999999999887 222 2345677888888999999999999888877765
No 105
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.73 E-value=0.00014 Score=75.67 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=90.7
Q ss_pred hcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHH
Q 000201 1718 LKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGP 1797 (1866)
Q Consensus 1718 ~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p 1797 (1866)
..|++.++|++|.+++..++..+... -.+..++..+..|+.| +.|+|.++..++..++..+|..+.++++.+++
T Consensus 36 ~vDDGLelRK~ayE~lytlLd~~~~~-----~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~ 109 (169)
T PF08623_consen 36 KVDDGLELRKAAYECLYTLLDTCLSR-----IDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVE 109 (169)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHSTCSS-----S-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHH
T ss_pred eecCcHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 46889999999999999999977543 2468899999999999 99999999999999999999999999999999
Q ss_pred HHHhhhcc--Ccchhh----------hhHHHHHHHh-hcccccchhHH-HHHHHhhhh
Q 000201 1798 ALAECLKD--GSTPVR----------LAAERCAVHA-FQLTRGSEYIQ-GAQKFITGL 1841 (1866)
Q Consensus 1798 ~l~~~~~~--~~~~vk----------~aae~a~~~l-~~~~~~~~~~~-~~~~~~~~~ 1841 (1866)
++-+.+.. +..+|| +++.|+..++ .++...+ ... .+.+|+..+
T Consensus 110 ~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~-~~~~~~~~f~~~i 166 (169)
T PF08623_consen 110 PLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAE-SSPNKWNEFVEWI 166 (169)
T ss_dssp HHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-S-SSH-HHHHHHHHH
T ss_pred HHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccc-cCHHHHHHHHHHH
Confidence 99988754 334454 4555888888 5665544 334 788877643
No 106
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.019 Score=71.85 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchh---hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 574 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL---KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 574 ~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l---~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.-+.++++.|....++.....|+..|..++.-...+.+ ....++|.|..++..+.+..-..-|+.|+.++++.+++.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 35566777777665666777777777766642212222 223578999999999989888889999999999999976
Q ss_pred chhcHH-hHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 651 FEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 651 ~~p~v~-~llp~ll~~~-~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
..-.+. ..+|+++..+ .-.-.+|.+.+.+|+..|...-+...+ ..-+-..+.+|+==+-..++.|+-.-.+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 555554 4788877544 446778999999999999876554433 2223333444432234556677777777777765
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
.+-...+.+.+|.|..+|+..+.++-..+|-|+..++..+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 55455667888999999999899999999999999987665
No 107
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.24 Score=61.80 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccC
Q 000201 1091 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1170 (1866)
Q Consensus 1091 ~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~ 1170 (1866)
.|.+.+-|+.-++.+...+.++|.. -..+++.+++.+++.++..-...+..+.+.+++++.- -..++..+.+.+.
T Consensus 369 ~d~~~~yRqlLiktih~cav~Fp~~----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-r~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 369 SDDNGKYRQLLIKTIHACAVKFPEV----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-RASIIEKLLETFP 443 (948)
T ss_pred cccchHHHHHHHHHHHHHhhcChHH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHhhh
Confidence 4567778999999999988888854 4455566666778888887777777788877775431 1222222332222
Q ss_pred -CCCccchhhHHHHHHHHHHh
Q 000201 1171 -DPSASRRQGVCIGLSEVMAS 1190 (1866)
Q Consensus 1171 -d~~~~vr~~a~~~L~~li~~ 1190 (1866)
-....+-.++++.+|+....
T Consensus 444 ~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 444 QIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred hhcccccchhHHHHHHHHHhh
Confidence 23456667888888876543
No 108
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.49 Score=62.49 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHhccC
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVS 1598 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~-d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l~~~ 1598 (1866)
.+++++.+|-.+|+.+.--.. .|...=.+.|...+. .|++.+|..+.-++|.++ .+..-++|..+-|...++++
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~ 1010 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDE 1010 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCc
Confidence 457899999999997754222 255556667777777 569999999999999995 44445789999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCC
Q 000201 1599 DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSP 1678 (1866)
Q Consensus 1599 ~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~ 1678 (1866)
++.+|.+++-.|..++-+.--++ ...+-. ...++.|+++.++..|-..+..|.+.- +.+-+++++++.++.+.
T Consensus 1011 ~~~vRkta~lvlshLILndmiKV----KGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1011 SPSVRKTALLVLSHLILNDMIKV----KGQLSE-MALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHh----cccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 99999999999998886432211 122222 233578899999999998888887543 46778888888776554
No 109
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.43 Score=61.78 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=110.2
Q ss_pred CCChhHHHHHHHH-HHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHH
Q 000201 586 SDKYGERRGAAFG-LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 664 (1866)
Q Consensus 586 ~~~~~~R~~A~~~-L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~ 664 (1866)
+.....|+.|..- ++.+..|- + + ..+++-+.+.+. ..|...+...-.=+...++.-+ ....-.++.+.+
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~--d-m--ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~k 99 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGE--D-M--SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQK 99 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCC--C-h--HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHh
Confidence 3334556665554 44555433 2 1 234555556555 3344444322222223333222 223356778888
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh
Q 000201 665 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744 (1866)
Q Consensus 665 ~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~ 744 (1866)
-++|+++.+|-.|..++..+-. +.-+..+++.+.+.+++++..+|+.|+.++..+.+..++..... ..+..+..+
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l 174 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--GLIDILKEL 174 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHH
Confidence 9999999999999887766522 23348899999999999999999999999999998776654332 244456678
Q ss_pred ccCCChHHHHHHHHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
+.|++|.|..+|..+|..+-..
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999888654
No 110
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.67 Score=63.80 Aligned_cols=358 Identities=16% Similarity=0.159 Sum_probs=188.2
Q ss_pred HhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCc----chHHHHHHHHHhcCCC----cHHHHHH--HHhhhhh----
Q 000201 498 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP----KVHAVVDKLLDVLNTP----SEAVQRA--VSSCLSP---- 563 (1866)
Q Consensus 498 ~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~----~~~~l~~~l~~~l~~~----~~~v~~~--~~~~l~~---- 563 (1866)
.+|.+++ ..||--+.-|+..|.+-+.++.| .+..+|..++..+... ++.+.+. ..+.+..
T Consensus 57 ~~L~h~d------~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~ 130 (1266)
T KOG1525|consen 57 FLLKHKD------KDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFC 130 (1266)
T ss_pred HHhcCCC------cChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHH
Confidence 4555544 34888888888888887777655 4566777766665432 3322211 1111111
Q ss_pred ---hhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHH-HHhCCCcHHHHHHHHHH
Q 000201 564 ---LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE-GLADRNSAKRREGALLA 639 (1866)
Q Consensus 564 ---lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~-~i~~~~~~~~r~~al~a 639 (1866)
......+.+.++...+++-+.. ... .+-.-...|...+-.. .+.+ ...++..+.. .+.... ....+|...
T Consensus 131 l~~~l~d~~e~~~~~f~~f~d~~~~-~~~-~~v~~~~~i~~~li~e-~d~v-~~e~L~~ll~~lv~~~~--~~~~~a~~l 204 (1266)
T KOG1525|consen 131 LLMLLEDCQELVHELFRTFFDLARK-GHP-KKVFNMLDIAIMLITE-EDTV-QSELLDVLLENLVKPGR--DTIKEADKL 204 (1266)
T ss_pred heeeccchHHHHHHHHHHHHHHHhc-ccc-HHHHHHHHHHHHHHHh-hccc-hHHHHHHHHHHhccCCC--CccHHHHHH
Confidence 1111112233333333333322 211 1111122222222111 1122 2234444433 333322 122233333
Q ss_pred HHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHH
Q 000201 640 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 719 (1866)
Q Consensus 640 l~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L 719 (1866)
-..+.+..+...++.+.+.+..-+..-......++..--+.+-.+. ...++.+-.++|.|...|.+++-.+|..|+.++
T Consensus 205 a~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 205 ASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3344445555556666555443332211122333333334444442 234455677899999999999999999999999
Q ss_pred HHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH-hHHH--HHHHhhCCCChhHHHHHHH
Q 000201 720 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA-SLVP--TLLMGLTDPNDHTKYSLDI 796 (1866)
Q Consensus 720 ~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~-~lv~--~L~~~l~d~~~~vr~al~~ 796 (1866)
|.|...-..++....+.++..+++-+.|.++.||-+++++..++.- .+|.+. ...- .+.....|++..+|. ..
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~--~~~~~~~~~~~~~~l~~~~~D~~~rir~--~v 359 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL--NNPSIAKASTILLALRERDLDEDVRVRT--QV 359 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh--cCchhhhHHHHHHHHHhhcCChhhhhee--eE
Confidence 9999877777778889999999999999999999999999887753 355552 2222 233333344433331 11
Q ss_pred HHh-ccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh-c----CCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 797 LLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL-V----TEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 797 L~~-~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~-l----~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
++. +.+. ...-.....++..+...+.|..|.||..|..-+..+... . ...+...+-...|-..+..++-..+.
T Consensus 360 ~i~~~~v~-~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~ 438 (1266)
T KOG1525|consen 360 VIVACDVM-KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDL 438 (1266)
T ss_pred EEEEeehh-HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccc
Confidence 100 0000 000011122556666788899999999999888887763 1 11133334444444555555554444
Q ss_pred hHH
Q 000201 871 EVR 873 (1866)
Q Consensus 871 ~vR 873 (1866)
+.|
T Consensus 439 ~~r 441 (1266)
T KOG1525|consen 439 DDR 441 (1266)
T ss_pred cHH
Confidence 555
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.67 E-value=0.0026 Score=74.67 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000201 1479 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 1558 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~ 1558 (1866)
..+.+..|..-|-.+...-+-.....|..+|+-.++.++++..+...|..+|..|..+++.-+..+..+..-.+..++.+
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 34556666554444443322445667788888889999999668889999999999999988888888888888888899
Q ss_pred hcCCCHHHHHHHHH-HHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh
Q 000201 1559 LQDSTRTVRSSAAL-ALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV 1637 (1866)
Q Consensus 1559 l~d~~~~vR~~Aa~-aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l 1637 (1866)
-.|++.+|-..|.. |+-.+..+.|- .-+..+...+.+.|...-..+++.+..++........-..++.|.+.+.+..
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~--~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay 457 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPL--QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY 457 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCch--hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh
Confidence 99986555445554 45555555442 2233444444445555666778889999988876644477888899888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 000201 1638 YHDDDHVRVSAASILGIMSQCMEDGQLADLLQEL 1671 (1866)
Q Consensus 1638 ~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~l 1671 (1866)
++.+..||..+..||-++....+.+.+.+.++.+
T Consensus 458 ~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred cCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 8999999999999999999999977788877644
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.12 Score=65.29 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=112.2
Q ss_pred HHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhh-HHh-hhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccch--h
Q 000201 698 PSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ-LSQ-CLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--E 771 (1866)
Q Consensus 698 p~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~-~~~-~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~ 771 (1866)
..|+++|... +...+..++.-|..+.....+. +.. ..+.++|.|+.+|++. +.++...||+||..+++++... .
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 3455566554 4555555554444444332222 221 2357899999999875 4889999999999999988642 1
Q ss_pred H--HhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccC---CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 772 I--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTV---DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 772 i--~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~---~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+ ...||.|+..+..-.. .+. .++.+|-.+.-.|.. .+.-+..++ ..+.==+..+++.|..+..|+|+.+
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L----sylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVL----SYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 3467777765543211 121 233333222222211 111111111 1121124578899999999999976
Q ss_pred CCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 845 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 845 ~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
.. +++. |.-..+|.|..+++..+...-+.++.|+..+++.+..
T Consensus 326 ~s-d~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 326 RS-DEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CC-ccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 43 4544 4455889999999988888888899999999987643
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.14 Score=57.38 Aligned_cols=253 Identities=16% Similarity=0.177 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhcc-ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhH----hhHHHHHHHhhcCCc
Q 000201 1141 VAGRALGELVRKLGE-RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM----DELIPTIRTALCDSI 1215 (1866)
Q Consensus 1141 ~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l----~~ll~~l~~~L~d~~ 1215 (1866)
....||.++.+...+ .+.|.++|.+..++..++..++.-+|..++.+++.+....+.+.+ .++++.+..++..++
T Consensus 62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 367788888776543 478999999999999999999999999999999988755554433 578888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHH
Q 000201 1216 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALG 1295 (1866)
Q Consensus 1216 ~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~ 1295 (1866)
.+|-.+|.+.+.++... +..++-+.| ++..+..-+..+.. +.+ +..+.+.+.
T Consensus 142 deVAkAAiesikrialf--paaleaiFe-------SellDdlhlrnlaa----kcn---------------diaRvRVle 193 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALF--PAALEAIFE-------SELLDDLHLRNLAA----KCN---------------DIARVRVLE 193 (524)
T ss_pred HHHHHHHHHHHHHHHhc--HHHHHHhcc-------cccCChHHHhHHHh----hhh---------------hHHHHHHHH
Confidence 99999999888877532 111111111 11111111111100 000 001112222
Q ss_pred HHHHHhCCC--chh--hHhhHHHHHHHhcCC-CCHHHHHHHHHHHhHhhhc-cchhc--HHHHHHHHHhccC--CCchhH
Q 000201 1296 ALAEVAGPG--LNF--HLGTILPALLSAMGD-DDMDVQSLAKEAAETVTLV-IDEEG--VESLVSELLKGVG--DNQASI 1365 (1866)
Q Consensus 1296 ~La~~~g~~--l~~--~l~~il~~L~~~l~~-~~~~vr~~a~~~l~~l~~~-~~~~~--~~~ll~~L~~~l~--~~~~~v 1365 (1866)
-+.+.+.-. ... .-..++..|..-++. ++.-++...++....+... .+.++ ...+++.+...+. |.+|--
T Consensus 194 LIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 194 LIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 222211100 000 012334444444543 4444554444444444331 12222 2334455544443 344555
Q ss_pred HHHHHHHHHHHHhhc------cchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1366 RRSSAYLIGYFYKNS------KLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1366 R~~a~~~l~~l~~~~------~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
+--+....+.|+.+. +...-..++..+...+.++...|+...++|..+++.+..+.
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 555667777776432 22233344556666677777778888899999998876543
No 114
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.46 E-value=0.0007 Score=68.64 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=80.9
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
++|.+.+.|.+.+|+.|..++.+|+.++...+......+. .++|.+.++++|+++.|+..|+++|.+++...... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HHH
Confidence 6777888888888999999999999999876554444333 89999999999999999999999999998643210 000
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000201 775 LVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 841 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~ 841 (1866)
+ .-..++|.+.+.+.+.+.+++..++.++.+++
T Consensus 87 ----~------------------------------~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 ----V------------------------------LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ----H------------------------------HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 0 00124555556666666778888888877765
No 115
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.45 E-value=0.012 Score=67.58 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHhhhhccC---CcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh---hhhHHHHHHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKD---DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ---DEAPTLVSRLLDQLM 584 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~---~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~---~~~~~~l~~ll~~L~ 584 (1866)
+.+|.+++.+|..+...++++ ...++.++.-+...+.+.. .+..+ ..++..++.... +.....+..+++...
T Consensus 13 ~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 13 PIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKMKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHhCC
Confidence 689999999999999887753 2346778888888885443 34443 666666663221 223444444444322
Q ss_pred cCC-ChhHHHHHHHHHHHHHhhhCcchhh--hcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHH
Q 000201 585 KSD-KYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 661 (1866)
Q Consensus 585 ~~~-~~~~R~~A~~~L~~l~~~~g~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ 661 (1866)
-.. ....|....+-+..++.... +.+. ..+.+..+.+.++.++||+.-..+...+..+..... +.++...++..
T Consensus 91 ~q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~ 167 (262)
T PF14500_consen 91 VQSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDV 167 (262)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHH
Confidence 111 23467777777777776542 1111 125677777889999999987777776666666665 36677777777
Q ss_pred HHHHc--------CCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh-hHHh
Q 000201 662 LLVAF--------SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQ 732 (1866)
Q Consensus 662 ll~~~--------~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~-~~~~ 732 (1866)
+...+ +|+...-|+.-..++..++...+ .--+..+|.+++.|.+....+|..+++.|...+...+. .+..
T Consensus 168 ~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~ 246 (262)
T PF14500_consen 168 FSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSP 246 (262)
T ss_pred hhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 66554 35555667777777777765332 22378999999999999999999999999998887654 4666
Q ss_pred hhcchhHHHh
Q 000201 733 CLPKIVPKLT 742 (1866)
Q Consensus 733 ~l~~iv~~l~ 742 (1866)
+...|+..+-
T Consensus 247 ~~~~iw~~lk 256 (262)
T PF14500_consen 247 HWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 116
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.45 E-value=0.00079 Score=68.25 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
++|.+...+.+.+..+|..+..++..++...+. ..+ ..++|.+.+.|.+++++++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888899999999999999999875322 222 3789999999999999999999999999998775433322
Q ss_pred h-cchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 734 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 734 l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
. ..+++.+.+.+++.+..+|..++++|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 368999999999999999999999999876
No 117
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.38 E-value=1 Score=58.89 Aligned_cols=167 Identities=20% Similarity=0.248 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChh
Q 000201 713 QSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDH 789 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~ 789 (1866)
+.++.+|.++++.......-.-..+++.|+++|+..+.++.-.+...|..++-.-.|. .+ ..++|.|.+.+..++..
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 3567788899987655544444689999999999999999999999999988544443 22 56899999999877765
Q ss_pred HH-HHHHHHHhccccccCCcch-hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-
Q 000201 790 TK-YSLDILLQTTFVNTVDAPS-LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV- 866 (1866)
Q Consensus 790 vr-~al~~L~~~~~~~~~~~~~-l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~- 866 (1866)
.. .++..|.+.+|....-... -..++|.+...+.+. +.+..+..++.+++.- .+.+.+-.|.+ .+|.+.+.+.
T Consensus 347 l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~Td-cIp~L~~~Ll~ 422 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTD-CIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcc-hHHHHHHHHHh
Confidence 54 6888888776654432211 134678888888765 3556678888888752 12223333333 5666666543
Q ss_pred CCCHhHHHHHHHHHHHH
Q 000201 867 DPIPEVRSVAARAIGSL 883 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l 883 (1866)
.+.+.+...++..+-.+
T Consensus 423 ~~~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 423 NSEEEVQLELIALLINL 439 (708)
T ss_pred CCCccccHHHHHHHHHH
Confidence 34555554443333333
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.38 E-value=0.0005 Score=65.24 Aligned_cols=86 Identities=27% Similarity=0.387 Sum_probs=68.9
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 659 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 659 lp~ll~~~-~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+|.++..+ +|+++.||..+..+++.+- -+..+|.+.+.+++++|.+|..++..|+.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46677777 8999999999999888432 24678889999999999999999999997742 467
Q ss_pred hHHHhhhccCC-ChHHHHHHHHHHH
Q 000201 738 VPKLTEVLTDT-HPKVQSAGQTALQ 761 (1866)
Q Consensus 738 v~~l~~~L~D~-~~~VR~aA~~aL~ 761 (1866)
++.+.+.+.|+ +..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77888877664 5667999999885
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.37 E-value=0.01 Score=70.18 Aligned_cols=187 Identities=25% Similarity=0.214 Sum_probs=133.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC--CC---Ch
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--EE---NF 892 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g--~~---~~ 892 (1866)
.+..+.+++...|..+...+..+...--.++.+......++..+.+.++.+..+-+..|.++++.++-.+| ++ .|
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34455677789999988877777653222234455667789999999987777777789999999999877 32 67
Q ss_pred hhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhC--hhHHH---HHHHHHHHHh--c----------cCChhHHhHHH
Q 000201 893 PDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALG--TVYFE---HILPDIIRNC--S----------HQRASVRDGYL 954 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g--~~~l~---~ll~~l~~~l--~----------~~~~~vR~~al 954 (1866)
..+.|.|...+.+.. ....|..++.+|+-++-..+ .+... +.|..++... . .+++.+..+++
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 788888888887654 34567777777766544333 23333 3344332221 1 12457889999
Q ss_pred HHHHHhhhhhch-hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 000201 955 TLFKYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1004 (1866)
Q Consensus 955 ~~l~~L~~~~g~-~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~ 1004 (1866)
.+|+.|...++. .+..++...+|.+...|..++.+||.+|-+++..+.+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999988875 56777888999999999999999999999988877654
No 120
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.34 E-value=0.0071 Score=65.82 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC
Q 000201 1563 TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1563 ~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~ 1641 (1866)
|+.||..+..++|.|+ .+..-++++++.+...++++++.+|..++..|..++...--++ ...++..+...+.|++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHHcCCC
Confidence 5689999999999995 4555689999999999999999999999999999987643333 3444444445568899
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccC
Q 000201 1642 DHVRVSAASILGIMSQCMEDGQLADLLQELLNLAS 1676 (1866)
Q Consensus 1642 ~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~ 1676 (1866)
+.+|..|..++..+.....++.+...+.+++..++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999887444567777777665443
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.012 Score=64.17 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHH
Q 000201 1479 SAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKC 1558 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~ 1558 (1866)
++.+|..+..++|+++.+. +..+.||. +.+...+.|. ++.||..++.+|..|+..- +...-++++..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~----~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYL----PNLYKCLRDE-DPLVRKTALLVLSHLILED---MIKVKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHH----HHHHHHHCCC-CHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHH
Confidence 3678999999999999887 45555554 4456777775 7899999999999998742 222336777888899
Q ss_pred hcCCCHHHHHHHHHHHHHHHhc-cC-ChhhHHHHHHHHhcc
Q 000201 1559 LQDSTRTVRSSAALALGKLSAL-ST-RVDPLVGDLLSSLQV 1597 (1866)
Q Consensus 1559 l~d~~~~vR~~Aa~aLg~L~~~-~~-~~~~~l~~L~~~l~~ 1597 (1866)
+.|++++||..|..++..+..- +| .+...+++++..+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999654 33 366777888777754
No 122
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.76 Score=56.31 Aligned_cols=274 Identities=12% Similarity=0.208 Sum_probs=152.5
Q ss_pred hhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhh--hhccCCcc-hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhH
Q 000201 490 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK--HLAKDDPK-VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 566 (1866)
Q Consensus 490 ~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~--~l~~~~~~-~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~ 566 (1866)
..++..+..+|+..+..+ +..-..++.++++=.+ ++.++.-. ...++...+..++ +...-..+.+|+..+.+
T Consensus 152 ~~~L~~l~~lLe~~~l~~---~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~ 226 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKS---SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLY 226 (559)
T ss_pred HHHHHHHHHHHhhcCCCh---hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHH
Confidence 455555666666544432 2344556666655433 33332200 1134444555555 33566677777665554
Q ss_pred hhhhh-----h-------HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh-hcchHHHHHHH--HhCCCcHH
Q 000201 567 SMQDE-----A-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREG--LADRNSAK 631 (1866)
Q Consensus 567 ~~~~~-----~-------~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~-~~~ii~~L~~~--i~~~~~~~ 631 (1866)
...+. . ...++..+..-...++.+.+.+-+.-+..+....--.... +.+-++.+.-. .....++.
T Consensus 227 ~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 227 CSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred HhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchh
Confidence 43311 1 1223334444444566666665555555544422100000 11222222111 13334555
Q ss_pred HHHHHHHHHHHHHHHhC--------cCchhcHHhHHHHHHHHcCCC------------CHHHHHHHHHHHHHHHHhhcHh
Q 000201 632 RREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ------------VVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l~--------~~~~p~v~~llp~ll~~~~D~------------~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
.-+.....+-.+.+.+- ..|.||+.+++..+..-..=+ -..-|....+.++.++..+++.
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~ 386 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD 386 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 55555555555555432 247899988888887665422 2357788888888887777665
Q ss_pred hH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-
Q 000201 692 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 769 (1866)
Q Consensus 692 ~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~- 769 (1866)
.. +.+.-.+.+ .+.+|+.-.+++-.+..++...+..-...+|.++..+.++=.- ..+|..++--++.+.+++..
T Consensus 387 e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q--~~~~~ts~ll~g~~~ew~~~~ 462 (559)
T KOG2081|consen 387 ECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ--APLRYTSILLLGEYSEWVEQH 462 (559)
T ss_pred HHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc--hhHHHHHHHHHHHHHHHHHhC
Confidence 43 555444444 5678999999999999999987665555555555544443222 33999999999999988863
Q ss_pred hhH
Q 000201 770 PEI 772 (1866)
Q Consensus 770 ~~i 772 (1866)
|+.
T Consensus 463 p~~ 465 (559)
T KOG2081|consen 463 PEL 465 (559)
T ss_pred cHH
Confidence 444
No 123
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=1 Score=56.50 Aligned_cols=171 Identities=25% Similarity=0.295 Sum_probs=114.3
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL-LSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l-l~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
+..++++..+ +.|.|+-.|..-.+.++.-...++. ...++.|+.. .+|.+.+||.+|.-+|+-++-+.|.
T Consensus 518 e~Ad~lI~el---~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 518 EDADPLIKEL---LRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhhHHHHHHH---hcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 3456666665 4577899999888877755433321 3456666665 7899999999999998877644332
Q ss_pred chhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhh
Q 000201 1424 EVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLK 1503 (1866)
Q Consensus 1424 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~ 1503 (1866)
.+|.++..+. .+-++-+|..++.+||-.|..++ .+
T Consensus 589 -~~~s~V~lLs-----------------------------------------es~N~HVRyGaA~ALGIaCAGtG---~~ 623 (929)
T KOG2062|consen 589 -QLPSTVSLLS-----------------------------------------ESYNPHVRYGAAMALGIACAGTG---LK 623 (929)
T ss_pred -hchHHHHHHh-----------------------------------------hhcChhhhhhHHHHHhhhhcCCC---cH
Confidence 2333332221 12357789999999999887764 22
Q ss_pred hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000201 1504 EFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574 (1866)
Q Consensus 1504 ~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aL 1574 (1866)
.. ..++.||. .|. ..=||..|+-+++-+..+.....-|-+..+...+.+.+.|.+++.-..-..+|
T Consensus 624 eA-i~lLepl~---~D~-~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 624 EA-INLLEPLT---SDP-VDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAIL 689 (929)
T ss_pred HH-HHHHhhhh---cCh-HHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22 23334443 342 45699999999998888877777888888888888888888765444333333
No 124
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.27 E-value=0.0011 Score=69.82 Aligned_cols=92 Identities=27% Similarity=0.346 Sum_probs=83.8
Q ss_pred ccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH---HHhc
Q 000201 1464 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII---IRKG 1540 (1866)
Q Consensus 1464 l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L---~~~~ 1540 (1866)
.+..+|+|.+|+......-+-.|..++.+++...+++.+.|.+++++.|+.+.+..+ +.++...+|.+|..| ...+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhh
Confidence 457899999999999888899999999999998558889999999999999999986 889999999999999 6678
Q ss_pred CCCCCCchHHHHHHHH
Q 000201 1541 GIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1541 ~~~~~~~lp~L~~~l~ 1556 (1866)
|..+.||+.|+++.+-
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999876
No 125
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.042 Score=69.37 Aligned_cols=221 Identities=22% Similarity=0.274 Sum_probs=144.8
Q ss_pred hHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 858 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 858 l~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
.+.....+.|+.+.+|..+...+..+++.-... .-..++...++.+++++++ +-..+++++..++..... .+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy~e----~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVYPE----DI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhcch----hh
Confidence 444556678899999999999999999854322 2346778888899888776 667788877777776544 45
Q ss_pred HHHHHHH-hcc---C--ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 935 LPDIIRN-CSH---Q--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 935 l~~l~~~-l~~---~--~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+|.+.+. .+. . +..+|-| .++..+....|+-+..|...++..++.+..|++...|..++..++.++......
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 5555552 221 2 3445555 899999999999999999999999999998887777776666665554322110
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH-
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY- 1087 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~- 1087 (1866)
+.+.+.+++..+.
T Consensus 882 ------------------------------------------------------------------vsd~~~ev~~~Il~ 895 (982)
T KOG4653|consen 882 ------------------------------------------------------------------VSDFFHEVLQLILS 895 (982)
T ss_pred ------------------------------------------------------------------hhHHHHHHHHHHHH
Confidence 0011112222222
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH----HHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV----LMNTLISSLA-SSSSERRQVAGRALGELVR 1151 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~----l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~ 1151 (1866)
....|.+..+|++|++++..+-..+++.+-+++.. +...+..... +++...|..|..|+.++-.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a 964 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA 964 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 12467888999999999999998888765554322 2222222222 4455567777766665543
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.23 E-value=0.0017 Score=61.60 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=68.9
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChh
Q 000201 815 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 893 (1866)
Q Consensus 815 ~p~L~~~l-~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~ 893 (1866)
+|.|.+.+ ++.++.+|..++.+++.+.. +..++.+...++|+++.||..|+.+|+.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 46677777 88899999999998885432 3578888899999999999999999998742 5
Q ss_pred hHHHHHHHhcccCCCHHHHHHHHHHHH
Q 000201 894 DLVSWLLDALKSDNSNVERSGAAQGLS 920 (1866)
Q Consensus 894 ~l~~~L~~~L~~~~~~~~R~~a~~~L~ 920 (1866)
..++.|.+.+.++.+..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 678888888887777767888887775
No 127
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0049 Score=68.89 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=129.4
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
...+...+..|.+++|..+..++..+..++...++.+...|..++..+++-++...+.|..+||.+++.+.....+...+
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788999999999999999999999899999999999999999999999999999999999999887654333
Q ss_pred ---hHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcc
Q 000201 774 ---SLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 849 (1866)
Q Consensus 774 ---~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~ 849 (1866)
.++-.|+......+..+|+ +-+.|..... ...-..+++.|..++...++.+|..++..+.+....++-...
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~-----~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~ 241 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVN-----HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPV 241 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh-----ccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccch
Confidence 3333333332333445663 4444433111 123345777888888888999999998888777765553333
Q ss_pred hhhhHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 850 MIPYIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 850 l~~~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
..++...+.+.+.+-+.|.-+.+|+.|-..
T Consensus 242 ~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 242 LLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 445666677777777777777766554433
No 128
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.20 E-value=0.024 Score=67.16 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=133.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhh-cChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--CCCC
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEV-TSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG--IALK 1545 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~-~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~--~~~~ 1545 (1866)
.-.++.+.......|+.++..+..+... ...+.+......++..+.+.+... ..+-+..++.+++.++-.+| ....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445556666788999999888877743 324556666677888888888654 34667788899998888866 5555
Q ss_pred CchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcc-CChh------hHHHHHHHH--hcc----------CChhHHH
Q 000201 1546 PFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALS-TRVD------PLVGDLLSS--LQV----------SDAGIRE 1604 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~~~-~~~~------~~l~~L~~~--l~~----------~~~~vr~ 1604 (1866)
.++..+.|.+.+.+.|. +..+|..++.|||.+.-+. ...+ ..+..+... .+. +++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 67788888888888887 4578889999999874332 2222 222222221 111 1357999
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000201 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 1658 (1866)
Q Consensus 1605 ~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~ 1658 (1866)
+++.++.-++...+..-........++.+...+.+++-+||.+|.++|.-+...
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988876423366677778888888999999999999999877643
No 129
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.023 Score=62.22 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=128.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
+..+.+.+.|.+.-.....+-++++.. ...-+|.+...|.+ ..+-+|+.|..+||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ-------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc-------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 344555555555444444444444432 23445666666654 346778888888877662 23
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHH
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 816 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p 816 (1866)
+.+.+.+..+|+...|+..|..|+.++-..-.-..+....| +.. .||... ....-++
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p-~~S--vdPa~p--------------------~~~ssv~ 157 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSP-YIS--VDPAPP--------------------ANLSSVH 157 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCc-ccc--CCCCCc--------------------cccccHH
Confidence 44455555677778888877777776632110000000000 000 233211 0000011
Q ss_pred HHHHhhcCC-CH-HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 817 IVHRGLRER-SA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 817 ~L~~~l~d~-~~-~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
.+...+.|. .+ --|..|.-.+-++.. +.-+..+.+.+.+.+.-.|..++.+||.+-. +.
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ 218 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGT------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PA 218 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCc------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hh
Confidence 222222221 11 112233222222211 2245566677777788888888888887665 33
Q ss_pred HHHHHHHhcccC-CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 895 LVSWLLDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 895 l~~~L~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
-+|.|.+.|.+. +.+-+|..++.+||.++. ++.++.+.+.+.++.+-+|+++..+|..+--.-++.|
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~~ 286 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKEF 286 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 455555555432 334588899888887654 3445566777788888899888777765544334443
No 130
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.18 E-value=3.4 Score=60.78 Aligned_cols=256 Identities=21% Similarity=0.279 Sum_probs=152.8
Q ss_pred hcCCCCHHHHHHHHHHHhHhhhccch---------hcHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHhhccchhhh--
Q 000201 1319 AMGDDDMDVQSLAKEAAETVTLVIDE---------EGVESLVSELLKG-VGDNQASIRRSSAYLIGYFYKNSKLYLVD-- 1386 (1866)
Q Consensus 1319 ~l~~~~~~vr~~a~~~l~~l~~~~~~---------~~~~~ll~~L~~~-l~~~~~~vR~~a~~~l~~l~~~~~~~~~~-- 1386 (1866)
.+...+.++|..+..++..++..... +.+..++..+... +.+.++.+|......+. ..+.+
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-------~~~~~~l 561 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-------ERFDAQL 561 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-------cchhhhh
Confidence 44556677877765544444432111 1244444444433 45677777776666655 11111
Q ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhh-hhhhhhh--cCCc--cccCCc--C
Q 000201 1387 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR-DKERRKK--KGGP--ILIPGF--C 1459 (1866)
Q Consensus 1387 ~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~-~~~~~~~--~~~~--~~l~g~--~ 1459 (1866)
--+..+..++..+.|..-..+..+...++++....++..++.+............ +...+.. .+.. ..+.+- -
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 1246667788888888888888888888877766554444444333322221110 0000000 0000 000000 0
Q ss_pred CCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 000201 1460 LPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1460 ~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~ 1539 (1866)
...++.+++-.++..+.+++...-..+..+++.++... +...+.++...+..+...+++..+...|.+++.+++.+...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~-g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVG-GEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhc-cchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 00123334444444455555566667889999999877 56676777767777777787776778899999999999998
Q ss_pred cCCCCCCch--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccC
Q 000201 1540 GGIALKPFL--PQLQTTFIKCLQDS-TRTVRSSAALALGKLSALST 1582 (1866)
Q Consensus 1540 ~~~~~~~~l--p~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~ 1582 (1866)
.|-.+.|+. |.++..+..-+... ...+|..+...+|.+....+
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 887777775 88888887776665 77899999999996644433
No 131
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=2.7 Score=58.67 Aligned_cols=183 Identities=18% Similarity=0.106 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC---ChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc
Q 000201 669 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745 (1866)
Q Consensus 669 ~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~---~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L 745 (1866)
..+.+|+....++.++......+....++......+.|. ..+.+.++..+++.+.+..+......+...+..+.++.
T Consensus 64 ~~~p~rkL~s~~i~rl~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~ 143 (2067)
T KOG1822|consen 64 AGPPTRKLISVAIARLISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLV 143 (2067)
T ss_pred CCchhHHHHHHHHHHHHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHH
Confidence 467788888888888888744444455555555555543 46788889999999998887776666666677777777
Q ss_pred cCCChHHHHHHHHHHHHHHhhccch-hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 824 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~-~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d 824 (1866)
+-....+|......+....+..+.. .... ....+.-.....+.+
T Consensus 144 k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~-----------------------------------~~k~i~l~~k~~lld 188 (2067)
T KOG1822|consen 144 KTNESFVRQEIMITLHNALKGMGGTSAATA-----------------------------------THKAIRLIAKNSLLD 188 (2067)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccchHHHH-----------------------------------HHHHHHHHHhhhhhh
Confidence 7666677777766666655443310 0000 011111122223345
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
++..+|..+..++..+... +.+.-...-++..-....+...+..+++|...+++++.+....
T Consensus 189 ~s~~v~iaa~rc~~a~s~~-~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 189 RSFNVKIAAARCLKAFSNL-GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred hhHHHHHHhHHHHHHHHhh-cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 5556777777776666553 2211112223444445555667788999999999999998754
No 132
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=2.7 Score=58.67 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHhCcC
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR--NSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~--~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
.+....+...+.....+..|+-...+++.+... |.. +..+..+......+.+. +++....++..+++..-+..|+.
T Consensus 50 ~~~~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~-f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~ 127 (2067)
T KOG1822|consen 50 LKLEQQLISRLTNGAGPPTRKLISVAIARLISN-GDS-FSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRM 127 (2067)
T ss_pred HHHHHHHHHHHccCCCchhHHHHHHHHHHHHhc-cch-hhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHh
Confidence 455666777777777788999999999999886 432 22233444444444443 55667778888888888888876
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH----h-hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA----Q-GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~----~-~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
...-....+.++.+..+..+..+|.....++......++. + ..+.+.-.....+.+.+..+|.++..++.++...
T Consensus 128 ~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 128 IGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 5555666777777777777788888777766666555542 1 1255666666677778888999999999988876
Q ss_pred ChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 726 APQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 726 ~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
.+..+ ...+.......++...+.+.+||.+-+++++.+....
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred cCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 54433 3344555556677788899999999999999988655
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.13 E-value=0.00083 Score=56.99 Aligned_cols=54 Identities=31% Similarity=0.319 Sum_probs=50.4
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1000 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~ 1000 (1866)
|.+|..++.+++.++...+..+.+|++.++|.+...+.|+++.||.+|..++..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999988764
No 134
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.023 Score=71.59 Aligned_cols=220 Identities=18% Similarity=0.179 Sum_probs=144.2
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1014 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~ll 1014 (1866)
+...+..+.++.+.+|.+++..+..+.+.-.+.-.-....++...+..++|++..|--++.++...+++.++++.++.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 34445566778889999999999988874433222345678899999999999999889998888888887776555544
Q ss_pred HhHhcccCCC--chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhch---hhhHHHHHHHHHh
Q 000201 1015 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR---DKRNEVLAALYMV 1089 (1866)
Q Consensus 1015 p~l~~~l~d~--~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~---~~~~~vl~~L~~~ 1089 (1866)
....+.-... +.+++. -+.+..++ ..+|+ .++..++.....+
T Consensus 809 e~Y~s~k~k~~~d~~lkV--GEai~k~~-------------------------------qa~Gel~~~y~~~Li~tfl~g 855 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKV--GEAILKVA-------------------------------QALGELVFKYKAVLINTFLSG 855 (982)
T ss_pred HHHHhcccCCCccceehH--HHHHHHHH-------------------------------HHhccHHHHHHHHHHHHHHHh
Confidence 4333222111 223322 23333333 22232 3445555555556
Q ss_pred cCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccch-------
Q 000201 1090 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSI------- 1161 (1866)
Q Consensus 1090 ~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~l------- 1161 (1866)
..|++..-|..++..++.++..+...+.+++..++..++.... +.+.-+|.+|+..+..+....|...+|-.
T Consensus 856 vrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl 935 (982)
T KOG4653|consen 856 VREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDL 935 (982)
T ss_pred cCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6788888999999999999886665566677777766665443 67889999999999999999887655522
Q ss_pred HHHHhcccC-CCCccchhhHHHHHHHH
Q 000201 1162 IPILSRGLK-DPSASRRQGVCIGLSEV 1187 (1866)
Q Consensus 1162 lp~L~~~L~-d~~~~vr~~a~~~L~~l 1187 (1866)
...+..... +++...|.-+|.++-++
T Consensus 936 ~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 936 DETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 222222222 33444566666666554
No 135
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.08 E-value=0.007 Score=75.11 Aligned_cols=248 Identities=14% Similarity=0.162 Sum_probs=167.0
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 665 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~ 665 (1866)
-++..+|..--.+|...+.... +.+....+.+.|...+.-...... .+..+-.+...+. -++|...++|.++++
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~p-e~i~~~kvlp~Ll~~~~~g~a~~~---~ltpl~k~~k~ld--~~eyq~~i~p~l~kL 338 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFP-EEIIASKVLPILLAALEFGDAASD---FLTPLFKLGKDLD--EEEYQVRIIPVLLKL 338 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhccccchh---hhhHHHHhhhhcc--ccccccchhhhHHHH
Confidence 3445566666666666555543 333345666766665543221011 1111111122222 255888899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 744 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~ 744 (1866)
|+-++..||-.-..-+...+..++++.+ +.++|.+..++.|.+.-.|..++..+..++.+....... .+++..+..+
T Consensus 339 F~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln--~Ellr~~ar~ 416 (690)
T KOG1243|consen 339 FKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN--GELLRYLARL 416 (690)
T ss_pred hcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc--HHHHHHHHhh
Confidence 9999999999999999999999999888 899999999999999999999999999999886655211 2666677777
Q ss_pred ccCCChHHHHHHHHHHHHHHhhccchhHHh-HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~-lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
-.|.++..|....-||+.++..+.....+. +...+.+.+.||-...| .++..+..+ ...+........|+|.+.-..
T Consensus 417 q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at-~~~~~~~~va~kIlp~l~pl~ 495 (690)
T KOG1243|consen 417 QPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAAT-QEYFDQSEVANKILPSLVPLT 495 (690)
T ss_pred CccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhc-ccccchhhhhhhccccccccc
Confidence 779999999999999999988764322222 23345667788876666 333333331 112223334556777777777
Q ss_pred cCCCHHHHHHHHHHHHHHhh
Q 000201 823 RERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~ 842 (1866)
-|.+..+|..|...+..+..
T Consensus 496 vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 496 VDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cCcccchhhHHHHHHHHHHh
Confidence 78888888887776666554
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.06 E-value=1.3 Score=53.88 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=135.6
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-c--Hh---hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-S--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 724 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l-~--~~---~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~ 724 (1866)
|+..+..++..++.+-+.+ .+-+.....+.+++.+. + ++ -+..++..++.++++++-.+|+-++++|.-+..
T Consensus 43 f~~~flr~vn~IL~~Kk~~--si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 43 FSEEFLRVVNTILACKKNP--SIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred hHHHHHHHHHHhhccccCC--CcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 5555666777777665543 33444555666666532 1 12 247788888999999999999999999999998
Q ss_pred hChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHHH-HHHHHHhccc
Q 000201 725 CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTTF 802 (1866)
Q Consensus 725 ~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr~-al~~L~~~~~ 802 (1866)
+..+--....+.+...+.+-+-|..+.||..|+.+|..+-+.-.|++. .+...|...+ +||+..||. ++-.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v--- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV--- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee---
Confidence 876543344557777888888899999999999999999876666543 2233333333 489888885 4433321
Q ss_pred cccCCcchhhhHHHHHHHhhcCCCHHHHHHHH-HHH---HHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 803 VNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIV---GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 803 ~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~-~~l---~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
-....|.++....|-+...|+..- .++ |.++.. .+.+ .+. .+...+.|....|+.++..
T Consensus 197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l-----si~k---ri~-l~ewgl~dRe~sv~~a~~d 259 (885)
T COG5218 197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL-----SIDK---RIL-LMEWGLLDREFSVKGALVD 259 (885)
T ss_pred --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-----cccc---eeh-hhhhcchhhhhhHHHHHHH
Confidence 122457777777776655555421 222 222221 1111 122 4556778888899988888
Q ss_pred HHHHHH
Q 000201 879 AIGSLI 884 (1866)
Q Consensus 879 aL~~l~ 884 (1866)
++..--
T Consensus 260 ~ia~~w 265 (885)
T COG5218 260 AIASAW 265 (885)
T ss_pred HHHHHh
Confidence 876543
No 137
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.04 E-value=0.03 Score=63.91 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=104.6
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH--hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh-H
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-V 693 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~--~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~-v 693 (1866)
+..|...++..+++..++.++.+++..+.... -...+. ..++.+...+.++++.||..|..++..++....... +
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 45666677777788888888888887654221 133343 468899999999999999999999998866554433 4
Q ss_pred HhHHHHHHhhcCCCCh--hhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 694 KLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w--~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+..++.+.+...+..| .++.+++.+|..|.-. ......+...+|.++.++...+..+|..+.+.|..++.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 6778888877666545 6777899999988643 22222334566777788888888899899888888875
No 138
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=97.01 E-value=0.0089 Score=74.26 Aligned_cols=247 Identities=15% Similarity=0.172 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHH
Q 000201 750 PKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828 (1866)
Q Consensus 750 ~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~ 828 (1866)
.+-|..-...|....+.+....+ ..++|.|+..+.=.+ .....+..+....... ...++-..++|.|.+++...+..
T Consensus 268 ~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a~~~~ltpl~k~~k~l-d~~eyq~~i~p~l~kLF~~~Dr~ 345 (690)
T KOG1243|consen 268 VEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-AASDFLTPLFKLGKDL-DEEEYQVRIIPVLLKLFKSPDRQ 345 (690)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-cchhhhhHHHHhhhhc-cccccccchhhhHHHHhcCcchH
Confidence 44444444444444443433333 556777766654222 1111222222211111 11235667999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCC
Q 000201 829 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDN 907 (1866)
Q Consensus 829 vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~ 907 (1866)
+|....+-+..++..++. ..+.+++.|.+...+.|.++.+|+...+++..++..+++..+ .+++..+.. ++.++
T Consensus 346 iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar-~q~d~ 420 (690)
T KOG1243|consen 346 IRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLAR-LQPDE 420 (690)
T ss_pred HHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHh-hCccc
Confidence 999988888888776654 335678999999999999999999999999999999998733 456666544 34455
Q ss_pred CHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC
Q 000201 908 SNVERSGAAQGLSEVLAALGTVYFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 986 (1866)
Q Consensus 908 ~~~~R~~a~~~L~~l~~~~g~~~l~~ll~-~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~ 986 (1866)
....|.....+++.+...+....-+.++. .....+.++-..-|.+....+......+... ..-.+|+|.+.-..-|+
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~va~kIlp~l~pl~vd~ 498 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--EVANKILPSLVPLTVDP 498 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--hhhhhccccccccccCc
Confidence 55588888888888877665443333332 3333466676677877777777666655432 34567888888888899
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 000201 987 NESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~ 1005 (1866)
+..||..+..++..+....
T Consensus 499 e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 499 EKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred ccchhhHHHHHHHHHHhhh
Confidence 9999999999888877654
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.00 E-value=0.24 Score=62.10 Aligned_cols=291 Identities=13% Similarity=0.098 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIK 1557 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~ 1557 (1866)
++...|..|+..|..+.+.. .......+..++.+..|. +..||..|+..|..+++.-+ .+++.+..++.+
T Consensus 34 g~~k~K~Laaq~I~kffk~F-----P~l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF-----PDLQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHH
Confidence 57888999999999888765 223345566678888774 78999999999998887543 488999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc---cCChhHHHHHHHHHHHHHHhcCcccc---HHHHHHHHH
Q 000201 1558 CLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ---VSDAGIREAILTALKGVLKHAGKSVS---SAVKIRVYS 1631 (1866)
Q Consensus 1558 ~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~---~~~~~vr~~~l~aL~~vi~~~~~~l~---~~~~~~i~~ 1631 (1866)
+|+..+......+-.+|-.+...+|. ..+..++..+. ..+..+|+.+++.|+.-+...+..+. ++.-.-|..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK--GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 99988888888999999888765442 34455555554 46788999999999888877766543 345566666
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHh---hcChhHHHHHHHHHHhcc------CCCCcchhhhHHHHHHHHHhhCCCccc
Q 000201 1632 VLKDLVYHDDDHVRVSAASILGIMSQ---CMEDGQLADLLQELLNLA------SSPSWAARHGSVLVFATFLRHNPSAIS 1702 (1866)
Q Consensus 1632 ~L~~~l~~~~~~vr~~aa~~l~~L~~---~~~~~~~~~~l~~ll~~~------~~~~~~~r~~~~~~L~~~l~~~p~~~~ 1702 (1866)
.+...+.+-..+--.....+|..+-. ..+......+++.+..+. ...+...-...+.++...+..+....-
T Consensus 182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~ 261 (556)
T PF05918_consen 182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS 261 (556)
T ss_dssp HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence 77777766444333444566666544 223333444444443322 111111111123344444444333332
Q ss_pred CCcchHHHHHHHHh----hhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCC------CHHHHHH
Q 000201 1703 MSPLFLSILDRLKS----SLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDD------SSEVRRR 1772 (1866)
Q Consensus 1703 ~~~~~~~~~~~l~~----~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~~vR~~ 1772 (1866)
...++.+++. .+.+=....+---...++.+..+++..+ ....+..++..+...+... ....-.+
T Consensus 262 ----Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d--~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEc 335 (556)
T PF05918_consen 262 ----SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD--ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVEC 335 (556)
T ss_dssp -----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T--HHHHHHHHHHHHHTTS----------HHHHHH
T ss_pred ----hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHHHhCCCCCCCCcccchHhhH
Confidence 2344444443 3333333445556677777777765432 2233444445554433222 2245577
Q ss_pred HHHHHHHHHhhCcc
Q 000201 1773 ALSALKSVAKANPS 1786 (1866)
Q Consensus 1773 a~~~l~~~a~~~~~ 1786 (1866)
.++++..+++..|+
T Consensus 336 LL~afh~La~k~p~ 349 (556)
T PF05918_consen 336 LLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHHHHHHTT-TH
T ss_pred HHHHHHHHhhhCcc
Confidence 88999999998886
No 140
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.028 Score=67.02 Aligned_cols=228 Identities=16% Similarity=0.177 Sum_probs=140.0
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhc
Q 000201 535 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 614 (1866)
Q Consensus 535 ~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~ 614 (1866)
-..+++.+-+.+...+.-.-+++.-.+. ++ ..+....+.++.++.---+.....+.|+-+.+++.+.-+. ...
T Consensus 444 n~eiye~lKe~l~nD~a~~geAa~~gMG-l~-mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe~--- 516 (926)
T COG5116 444 NREIYEKLKELLKNDRALLGEAAVYGMG-LL-MLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QEM--- 516 (926)
T ss_pred cHHHHHHHHHHHhcchhhhhhhhhhccc-ee-eecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HHH---
Confidence 3567888877777665222222211111 11 1123345666666644333333457777777777766543 221
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 694 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~ 694 (1866)
.-..+.+...+ +++.-|-+.+++++.---+.|. ...+..+++. ...|.+++||++|..|++-++-.- .
T Consensus 517 -add~I~ell~d-~ds~lRy~G~fs~alAy~GTgn--~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~D-----~ 584 (926)
T COG5116 517 -ADDYINELLYD-KDSILRYNGVFSLALAYVGTGN--LGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCDD-----R 584 (926)
T ss_pred -HHHHHHHHhcC-chHHhhhccHHHHHHHHhcCCc--chhHhhhhee---ecccCchHHHHHHHHheeeeEecC-----c
Confidence 12234444444 5667888887766555444443 2223333332 378999999999999998764321 2
Q ss_pred hHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---ch
Q 000201 695 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NP 770 (1866)
Q Consensus 695 ~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---~~ 770 (1866)
..++..++.|. +-++.+|.+.+-+||-.+.+.+.+... ..+-.+..|++.-||..|+.+++-+..... +|
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~------diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp 658 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVAT------DILEALMYDTNDFVRQSAMIAVGMILMQCNPELNP 658 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHH------HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccCh
Confidence 35556666664 468999999999999888877665432 334557789999999999999998775443 35
Q ss_pred hHHhHHHHHHHhhCCCC
Q 000201 771 EIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 771 ~i~~lv~~L~~~l~d~~ 787 (1866)
.+..+...+.+.+.|..
T Consensus 659 ~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 659 NVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 56667776766666543
No 141
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.95 E-value=0.18 Score=58.15 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=141.0
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHhhccch-hh-hhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC--Ccchhhhh
Q 000201 1354 LLKGVGDNQASIRRSSAYLIGYFYKNSKLY-LV-DEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV--PKEVQPSY 1429 (1866)
Q Consensus 1354 L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~-~~-~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~--~~~~l~~l 1429 (1866)
|-..+.++++.+|..+..+++.+....+.+ +. ..+.-++......++ |......+..++..+++.. +.+....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence 344566777888888888888776655433 22 223444444444553 3334444577777776321 12222222
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000201 1430 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 1509 (1866)
Q Consensus 1430 ~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i 1509 (1866)
+..+.+ ... ..+-....|..+...+..+.... ...++..-..+
T Consensus 82 ~~~l~~---~~~---------------------------------~q~~~q~~R~~~~~ll~~l~~~~-~~~l~~~~~~f 124 (262)
T PF14500_consen 82 LRSLFQ---NVD---------------------------------VQSLPQSTRYAVYQLLDSLLENH-REALQSMGDDF 124 (262)
T ss_pred HHHHHH---hCC---------------------------------hhhhhHHHHHHHHHHHHHHHHHh-HHHHHhchhHH
Confidence 211111 100 00112345777777777777654 33444333444
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh--------cCCC----HHHHHHHHHHHHHH
Q 000201 1510 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL--------QDST----RTVRSSAALALGKL 1577 (1866)
Q Consensus 1510 ~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l--------~d~~----~~vR~~Aa~aLg~L 1577 (1866)
+..++..+.+.-++.--..++..+..++...+. .++..++...+.-.+ +|+. ++++..-..||.
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-- 200 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-- 200 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--
Confidence 445555555433666666777777777777663 566666666655443 2332 345555555543
Q ss_pred HhccCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHh
Q 000201 1578 SALSTRVD-PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL 1636 (1866)
Q Consensus 1578 ~~~~~~~~-~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~ 1636 (1866)
.++.+. ..+|.|++.+.++.+.++..+++.|..++...|..-..++...||+.+...
T Consensus 201 --s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 201 --STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred --CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 334443 458889999998888999999999999999998875569999999988654
No 142
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.93 E-value=1.5 Score=54.67 Aligned_cols=402 Identities=13% Similarity=0.052 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHhCcCchhcHH-hHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhcHh------hHHhHHHHHHhhcC-
Q 000201 635 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 705 (1866)
Q Consensus 635 ~al~al~~L~~~l~~~~~p~v~-~llp~ll~~~~D~~-~~VR~~a~~al~~i~~~l~~~------~v~~llp~L~~~L~- 705 (1866)
+...+++.++.+....+...+. ..+|.++.++.+++ ..+++.+..+++.+.+.-+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4455567776665555555544 46888999999998 999999999999998754221 22556665555444
Q ss_pred CCChhhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hH----------H
Q 000201 706 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI----------A 773 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i----------~ 773 (1866)
+.....+..+. +.+.+.+.+..-.-... .+...+--++.-.+..+|.+|..++.+-...+.|+ .. .
T Consensus 152 ~lk~~~~l~~~--~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~ 229 (678)
T KOG1293|consen 152 ELKYISRLDVS--RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK 229 (678)
T ss_pred hhhhhhhhhhh--hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence 22222222211 11111111111111112 23333333444447889999999998544444432 11 1
Q ss_pred hHHH--HHHHhhCCCChhHH-HHHHHHHh-ccccccCCcchhh----------hHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 774 SLVP--TLLMGLTDPNDHTK-YSLDILLQ-TTFVNTVDAPSLA----------LLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 774 ~lv~--~L~~~l~d~~~~vr-~al~~L~~-~~~~~~~~~~~l~----------~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
.+.+ .+.+...+|....+ .++..+.. ....+..+...+. .+.-..+..+.++.+..-..++.+..-
T Consensus 230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~ 309 (678)
T KOG1293|consen 230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI 309 (678)
T ss_pred ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence 2333 33445566655444 23333322 1111111111110 001111122233333322333333333
Q ss_pred HhhhcCCCcchhhh----HhhhhHHHHHH--hcCCCHhHHHHHHHHHH---HHHhhcCCC---Chh-h-HHHHHHHhccc
Q 000201 840 MCSLVTEPKDMIPY----IGLLLPEVKKV--LVDPIPEVRSVAARAIG---SLIRGMGEE---NFP-D-LVSWLLDALKS 905 (1866)
Q Consensus 840 l~~~l~~~~~l~~~----~~~ll~~L~~~--l~d~~~~vR~~a~~aL~---~l~~~~g~~---~~~-~-l~~~L~~~L~~ 905 (1866)
.+....+. ....| .+.+...+... +....++.|..++.-.- .++...+.. ++. . ....++. +.-
T Consensus 310 ~a~~~skl-q~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~-~~~ 387 (678)
T KOG1293|consen 310 LARFASKL-QLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMC-LPP 387 (678)
T ss_pred HHHHHHhh-hhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcc-ccc
Confidence 33211110 00011 11111111111 12334444443322111 111111111 111 1 1111111 111
Q ss_pred CCCHHHHHHHHHHHHHHHHH---hChh-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHH
Q 000201 906 DNSNVERSGAAQGLSEVLAA---LGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAIL 980 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~l~~~---~g~~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll 980 (1866)
..+...+.+++.++-.+.+. +... .-..++..+++.+.+++..+...++.++..+..-++.-=..|+ ...+..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 22334666777776544443 2222 1134556667777888888999889999998888875333344 34778889
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccchhch-----HHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~l-----lp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
+.+.+++.++|..+.++++.++-+...+-...+ ..-+.....|++|.|...+.+++..+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654333211111 122334557999999999999998875
No 143
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.89 E-value=0.026 Score=64.46 Aligned_cols=189 Identities=19% Similarity=0.191 Sum_probs=122.4
Q ss_pred HHHHHhhcCC-CChhhHHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-hHH
Q 000201 697 LPSLLKGLED-KAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIA 773 (1866)
Q Consensus 697 lp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-~i~ 773 (1866)
+..++..|+. +++.++..++.+++..+.... ..+... -..++.+..+++++++.||..|.++|..++....+. .++
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 4455556653 467777777777777654322 223233 267788999999999999999999999998766554 456
Q ss_pred hHHHHHHHhhC-CC-ChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 774 SLVPTLLMGLT-DP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 774 ~lv~~L~~~l~-d~-~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
..++.+++.+. ++ +..++ .++..|...+..... ...+...+|.+.+.+...+..+|..+..++.+++. .+...
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~~~ 168 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPDMT 168 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHHHH
Confidence 77777776433 33 33444 678888775433222 33456678888888888899999999999999986 22111
Q ss_pred hh-hHhhhhHHHHHHhcCC-CHhHHHHHHHHHHHHHhhcCCC
Q 000201 851 IP-YIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 851 ~~-~~~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.. ...+.++.+..+++.. ..++...+...+..+.+.+..+
T Consensus 169 ~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11 1223455666666543 4555556666666666655443
No 144
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=4.6 Score=56.00 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=109.3
Q ss_pred chhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCC
Q 000201 1343 DEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422 (1866)
Q Consensus 1343 ~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~ 1422 (1866)
..+-+..++|.|...+..++..+|..|...+|.++......+.+.++.++...+.-+.|.+.+||-.+.......+.+.+
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence 34557788999999999999999999999999999876666667788999999999999999999999988888777654
Q ss_pred cchhhh-hHHHHHHHHhhhhhhhhhhhcCCc---cccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhc-
Q 000201 1423 KEVQPS-YIKVIRDAISTSRDKERRKKKGGP---ILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVT- 1497 (1866)
Q Consensus 1423 ~~~l~~-l~~~l~~~l~~~~~~~~~~~~~~~---~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~- 1497 (1866)
.-.-.. ....++.. ..|...+...+.. ..+..|.+ .....++....+-+.+..+.+|.+|+..+..+-+..
T Consensus 333 ~~~~~~~~~~~l~~~---~~D~~~rir~~v~i~~~~v~~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~ 408 (1266)
T KOG1525|consen 333 SIAKASTILLALRER---DLDEDVRVRTQVVIVACDVMKFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVY 408 (1266)
T ss_pred hhhhHHHHHHHHHhh---cCChhhhheeeEEEEEeehhHhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 321110 11111111 1111111111211 11111111 111225555567777888999999999999988741
Q ss_pred -----ChhhhhhhhhhhhHHHHHHhcC
Q 000201 1498 -----SEQSLKEFVIPITGPLIRIIGD 1519 (1866)
Q Consensus 1498 -----~~~~l~~~v~~i~~~Li~~l~~ 1519 (1866)
++....+-+..|...|++.+-.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~ 435 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYE 435 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhh
Confidence 1122333344444555555543
No 145
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=4.3 Score=52.48 Aligned_cols=266 Identities=17% Similarity=0.224 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCC-----hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 746 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~-----w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~ 746 (1866)
.-|....+++..+.+.++..-...+...+-+.+.+.+ |..-...+-.+..++...+.....- +|.+++.+-
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~a 514 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSA 514 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhcc
Confidence 4566666776666666664444566666666665544 8888888888888888766554443 444444332
Q ss_pred -----CCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHH
Q 000201 747 -----DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 819 (1866)
Q Consensus 747 -----D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~ 819 (1866)
-.++..-..+...++.++.++.+. ++...+|.|.+.+..+
T Consensus 515 sik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~s--------------------------------- 561 (982)
T KOG2022|consen 515 SIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNS--------------------------------- 561 (982)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCc---------------------------------
Confidence 235666667777777777666542 2344444444443322
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhhcCCC----Chh
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFP 893 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~~g~~----~~~ 893 (1866)
+.-..+...+..+|+ +.+.++.||.+.++..+...+.. -.+..|....+++|-+.....++ |..
T Consensus 562 --------k~s~q~i~tl~tlC~--~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~ 631 (982)
T KOG2022|consen 562 --------KESEQAISTLKTLCE--TCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLM 631 (982)
T ss_pred --------hHHHHHHHHHHHHHH--hhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHH
Confidence 222233334667777 45678999999999999988874 34678899999999999988743 455
Q ss_pred hHHHHHHHhccc----C-CCHHHHH-HHH--HHHHHHHHHhChh-----------------------HHHHHHHHHHHHh
Q 000201 894 DLVSWLLDALKS----D-NSNVERS-GAA--QGLSEVLAALGTV-----------------------YFEHILPDIIRNC 942 (1866)
Q Consensus 894 ~l~~~L~~~L~~----~-~~~~~R~-~a~--~~L~~l~~~~g~~-----------------------~l~~ll~~l~~~l 942 (1866)
.++..+++.+.. + +....+. .++ .+++.+...+-.+ .+.+++|.+-+.+
T Consensus 632 ~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~ 711 (982)
T KOG2022|consen 632 KLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVL 711 (982)
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHH
Confidence 555555555432 1 1122222 222 2234444433110 1233444443332
Q ss_pred c--cCChhHHhHHHHHHHHhhhhhchhh-HhHHHHHHHHHHhhcc
Q 000201 943 S--HQRASVRDGYLTLFKYLPRSLGVQF-QNYLQQVLPAILDGLA 984 (1866)
Q Consensus 943 ~--~~~~~vR~~al~~l~~L~~~~g~~f-~~~l~~il~~ll~~l~ 984 (1866)
. ..+..+-++++..++.=....+..| .|+++.+.+.+.....
T Consensus 712 s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~ 756 (982)
T KOG2022|consen 712 SMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLT 756 (982)
T ss_pred HHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc
Confidence 2 2345566666666555455666678 8999999999988544
No 146
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.50 E-value=1.5 Score=56.10 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC-ChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHH
Q 000201 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~-~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~ 925 (1866)
+.+...++..++.+..-+.+++..||...+..+..+-..+... .+.-=+..|++..++.+ +..+|.-+..-+..-...
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 4566777778888888889999999999999999998887753 22212445666666655 445666555555444445
Q ss_pred hChhHHHHHHHHHHHHhcc
Q 000201 926 LGTVYFEHILPDIIRNCSH 944 (1866)
Q Consensus 926 ~g~~~l~~ll~~l~~~l~~ 944 (1866)
++.+.-.+++|.+++.+..
T Consensus 95 l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 LDDEERRELLPSLLKGISK 113 (501)
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 5555556788888888763
No 147
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.49 E-value=0.38 Score=57.34 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCCCC--chHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHhccCChhHHHHH
Q 000201 1531 STLSIIIRKGGIALKP--FLPQLQTTFI-KCLQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSDAGIREAI 1606 (1866)
Q Consensus 1531 ~~L~~L~~~~~~~~~~--~lp~L~~~l~-~~l~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~L~~~l~~~~~~vr~~~ 1606 (1866)
.....+++.....+.+ .+..++..++ .++..++..+|..|.+|||...-+... ...+++.+...++..+..++..+
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~a 84 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITA 84 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555555444444 3346665554 788899999999999999998665543 45677778888876689999999
Q ss_pred HHHHHHHHHhcCccccHH--------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000201 1607 LTALKGVLKHAGKSVSSA--------VKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQC 1658 (1866)
Q Consensus 1607 l~aL~~vi~~~~~~l~~~--------~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~ 1658 (1866)
++++..++...|....+. ....+...+...+.+.+++++..+++.+.+|...
T Consensus 85 l~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 85 LKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999998888653322 2357888888888888999999999999997643
No 148
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.48 E-value=0.14 Score=61.05 Aligned_cols=155 Identities=20% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCc
Q 000201 1627 IRVY-SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSP 1705 (1866)
Q Consensus 1627 ~~i~-~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~ 1705 (1866)
..++ .++...+.+++..+|+.+.+|+|-.+.... +...+.+..+.......+...+..++.++..++..++...+...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3444 344567888899999999999999887655 34445555444444334555666677777777666665554332
Q ss_pred c-------hHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcC-CCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000201 1706 L-------FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1706 ~-------~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l 1777 (1866)
. ...+...+...+.++++.+|..|++++.+++.++.-.+ + ..+..++-..-..-..++...|+.--+-+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~---~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPP---KVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 2 36788899999999999999999999999998765332 1 22222222222222233445555555555
Q ss_pred HHHHhhCc
Q 000201 1778 KSVAKANP 1785 (1866)
Q Consensus 1778 ~~~a~~~~ 1785 (1866)
...+..++
T Consensus 181 p~y~~s~~ 188 (298)
T PF12719_consen 181 PVYASSSP 188 (298)
T ss_pred HHHHcCCH
Confidence 55555443
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.18 Score=55.56 Aligned_cols=231 Identities=17% Similarity=0.199 Sum_probs=131.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCC--CCccchhhHHHHHHHHHHhhchhhHHhhHh
Q 000201 1124 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMD 1201 (1866)
Q Consensus 1124 ~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d--~~~~vr~~a~~~L~~li~~~~~~~l~~~l~ 1201 (1866)
+..+.+.+.+.+...+.....+||++.. ...+|.+...+.+ ..+-+|+.+..+|+.+.. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~ 99 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------P 99 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------h
Confidence 3444444444444455555556655432 3445555555544 467789999988887631 3
Q ss_pred hHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCch--hHHHHHHHHHhhccccccchhhhh
Q 000201 1202 ELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILP 1279 (1866)
Q Consensus 1202 ~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~--~~al~~l~~il~~~~~~ilp~Lip 1279 (1866)
.+.+.+.+...|+-..|++....|+..+-...+........|. .. .++... ...+..++..+
T Consensus 100 ~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~--~S-vdPa~p~~~ssv~~lr~~l------------- 163 (289)
T KOG0567|consen 100 ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPY--IS-VDPAPPANLSSVHELRAEL------------- 163 (289)
T ss_pred hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcc--cc-CCCCCccccccHHHHHHHH-------------
Confidence 4455666666788888888776777666432211100000000 00 000000 00111111111
Q ss_pred hhhcCCccchhHHHHHHHHHHhCCCchhh----------HhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhcHHH
Q 000201 1280 KLVHLPLSAFNAHALGALAEVAGPGLNFH----------LGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEGVES 1349 (1866)
Q Consensus 1280 ~L~~~~~~~~~~~al~~La~~~g~~l~~~----------l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 1349 (1866)
.......+.+| -...+..+.+.+.+++.-.|..+.-++|.+-. +..++.
T Consensus 164 ------------------ld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s---~~ai~~ 222 (289)
T KOG0567|consen 164 ------------------LDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS---PAAIPS 222 (289)
T ss_pred ------------------HhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc---hhhhHH
Confidence 00001111111 14557778888888888888888888887754 222333
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
+...|.+. .+++-+|.-|+.+||.+.. ++.+..|...++|+++-|++.+.-+|...-...
T Consensus 223 L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 223 LIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred HHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 33333332 3468899999999999874 467888888999999999999888887665433
No 150
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.087 Score=63.04 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=157.3
Q ss_pred HHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhh
Q 000201 433 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 512 (1866)
Q Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~ 512 (1866)
++.-+|+-+-..+..+..+-+.+++. ..+|....+..--+-.|.-.+.-+ .. -.++...+..++-. +. ..
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~Mg-Sa-n~eiye~lKe~l~n-D~-----a~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMG-SA-NREIYEKLKELLKN-DR-----AL 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhcc-cc-cHHHHHHHHHHHhc-ch-----hh
Confidence 35556666655566555443433331 223333333332222333333322 11 13455555555433 11 23
Q ss_pred HHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcC-CCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhH
Q 000201 513 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 591 (1866)
Q Consensus 513 vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~-~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~ 591 (1866)
.-++++.-+|-++- .... ...+..|...-. +..+.+.+...-.+.-+++.. .+..+.++..|..++++-.
T Consensus 462 ~geAa~~gMGl~mL--gt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr----qe~add~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLML--GTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYGR----QEMADDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceeee--cCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh----HHHHHHHHHHHhcCchHHh
Confidence 44455555544431 1111 123333333222 222334444333344344443 3344456667777888888
Q ss_pred HHHHHHHHHHHHhhhCcchhhhcchHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC-CC
Q 000201 592 RRGAAFGLAGVVKGFGISSLKKYGIAATLREG-LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ 669 (1866)
Q Consensus 592 R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~-i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~-D~ 669 (1866)
|-+.+..++.--.+.|. ..++..+... +.+. +..+|.+|+.|+|-+|-.-. ..++...+.+. ..
T Consensus 533 Ry~G~fs~alAy~GTgn-----~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~sh 598 (926)
T COG5116 533 RYNGVFSLALAYVGTGN-----LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESH 598 (926)
T ss_pred hhccHHHHHHHHhcCCc-----chhHhhhheeecccC-chHHHHHHHHheeeeEecCc--------chhhHHHHHhhhcc
Confidence 88888777765555442 2345555555 4444 45678888888776663221 23333344444 45
Q ss_pred CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCC
Q 000201 670 VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH 749 (1866)
Q Consensus 670 ~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~ 749 (1866)
+..||-..+-+++..+...+. +..+..|-..+.|.+--+|++|+-+++-+.-.+.+++.+....|...+.++..|.|
T Consensus 599 N~hVR~g~AvaLGiacag~G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 599 NFHVRAGVAVALGIACAGTGD---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred chhhhhhhHHHhhhhhcCCcc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 899999999888877664443 33334344445678889999999999998888888888888899999999998877
Q ss_pred hH
Q 000201 750 PK 751 (1866)
Q Consensus 750 ~~ 751 (1866)
.+
T Consensus 676 e~ 677 (926)
T COG5116 676 ES 677 (926)
T ss_pred Hh
Confidence 43
No 151
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.41 E-value=1.2 Score=57.18 Aligned_cols=209 Identities=15% Similarity=0.167 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHH-hhCCCC
Q 000201 710 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLM-GLTDPN 787 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~-~l~d~~ 787 (1866)
+.|.+.+.+|...+.. + ...++.++-.-.|++.+|...|...|+++...+.++.+ +.++..+.. .+ ++.
T Consensus 219 ~~K~~il~fL~sg~f~--d------~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~-~~~ 289 (501)
T PF13001_consen 219 ERKLAILKFLASGFFP--D------EERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGI-PPE 289 (501)
T ss_pred HHHHHHHHHHHhcCCC--c------HhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC-chh
Confidence 3566666666544431 1 13344445556788899999999999988876665533 344443331 00 110
Q ss_pred hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC
Q 000201 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 867 (1866)
Q Consensus 788 ~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d 867 (1866)
.. ..--++.+|.+ ++.-+++.... ....+.++..+...+.+
T Consensus 290 ~~--------------------------------~~pa~~~lq~k---IL~~L~kS~~A----a~~~~~~~~i~~~~l~~ 330 (501)
T PF13001_consen 290 NG--------------------------------RPPASPRLQEK---ILSLLSKSVIA----ATSFPNILQIVFDGLYS 330 (501)
T ss_pred cC--------------------------------CCCCCHHHHHH---HHHHHHHhHHH----HhCCccHHHHHhccccC
Confidence 00 00012334433 44444432111 12335566667777776
Q ss_pred C--CHhHHHHHHHHH---HHHHhhcCCCChhhHHHHHHHhcc-----------cCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000201 868 P--IPEVRSVAARAI---GSLIRGMGEENFPDLVSWLLDALK-----------SDNSNVERSGAAQGLSEVLAALGTVYF 931 (1866)
Q Consensus 868 ~--~~~vR~~a~~aL---~~l~~~~g~~~~~~l~~~L~~~L~-----------~~~~~~~R~~a~~~L~~l~~~~g~~~l 931 (1866)
. ...+|..+...+ .......++.....+-+.++..+- +..+...|..+.++||.+++....-..
T Consensus 331 ~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~ 410 (501)
T PF13001_consen 331 DNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS 410 (501)
T ss_pred CccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc
Confidence 6 667777777777 666666666555555555544321 123456888999999999987654322
Q ss_pred --HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhch
Q 000201 932 --EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 966 (1866)
Q Consensus 932 --~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~ 966 (1866)
-.++..+++.+.++.+++|.+.-.+++.+..++..
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 24566777777778899998888888888877654
No 152
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.41 E-value=0.0041 Score=45.30 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
++|.+.++++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999864
No 153
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=2.6 Score=47.65 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=76.6
Q ss_pred CHHHHHH---HHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh-hHHh----hhcchhHH
Q 000201 670 VVAVREA---AECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQ----CLPKIVPK 740 (1866)
Q Consensus 670 ~~~VR~~---a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~-~~~~----~l~~iv~~ 740 (1866)
+.+-|+. +..++.++++...+-.+ +.++|.+-.+|..++-.+|.-+|..++.+.+.+.. .++. .-..|+|.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 4455555 67788888887666554 88999999999999999999999999999987652 2222 12478888
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHh
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
++.+...++.+|.++|.+++++++.
T Consensus 133 ildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999874
No 154
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=4.9 Score=50.59 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=127.5
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh---cHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL---SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l---~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
.++..++..++.....++..||..+...+..++... +..-+..+...+...+.|..+.+|..|+.+|..+-....+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 467788888999999999999999999999988733 22334778888888999999999999999998776421111
Q ss_pred HHhhhcchhHHHhhh-ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCC
Q 000201 730 LSQCLPKIVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVD 807 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~-L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~ 807 (1866)
. .+++..+..+ -+|++++||.+|..++..= + .-.|.++.-..|-+...|. ++..+.. -+ ...
T Consensus 161 ---e-~~v~n~l~~liqnDpS~EVRRaaLsnI~vd-----n----sTlp~IveRarDV~~anRrlvY~r~lp--ki-d~r 224 (892)
T KOG2025|consen 161 ---E-CPVVNLLKDLIQNDPSDEVRRAALSNISVD-----N----STLPCIVERARDVSGANRRLVYERCLP--KI-DLR 224 (892)
T ss_pred ---c-ccHHHHHHHHHhcCCcHHHHHHHHHhhccC-----c----ccchhHHHHhhhhhHHHHHHHHHHhhh--hh-hhh
Confidence 0 1344444443 3699999999998766421 1 1123334444444443342 2222221 00 011
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH
Q 000201 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 882 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~ 882 (1866)
.-+.+.-+-.+..+++|++..+|.++.+.+..=.-...+ ..++..|..+=.+.+.+|+..+..++-.
T Consensus 225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d--------gni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD--------GNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc--------ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123445566778899999999999887766441111111 1245555444445556777666666655
No 155
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.23 E-value=0.19 Score=67.13 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=96.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-----
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----- 691 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~----- 691 (1866)
+.++.+.+.+++-. ..+ |...+..+.......-..++..+.+.+.......++.++.+|.-+++.++......
T Consensus 397 v~~i~~~I~~~~~~-~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLT-DDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S--HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCC-HHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 34555666553321 122 33434444443322223334434333322222356789999988888877644322
Q ss_pred -------h-HHhHHHHHHh----hcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC---ChHHHHHH
Q 000201 692 -------G-VKLVLPSLLK----GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSAG 756 (1866)
Q Consensus 692 -------~-v~~llp~L~~----~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~---~~~VR~aA 756 (1866)
. .+.+++.+.. .....+-..+..++.+||++.. +.+++.+...+.+. ...+|.+|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~A 544 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAA 544 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHH
Confidence 1 1334444444 4445667888999999998864 35566666666655 68899999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCCh--hHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 832 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~--~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~ 832 (1866)
++||..++....+ .+.+.++....|+.+ .+| .|+..|..+ .|....+..+....-.+++..|+..
T Consensus 545 i~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 545 IQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhCchHHHHHH
Confidence 9999988654432 333444444444443 467 566666542 2333333333333334555555544
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=6.1 Score=50.42 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCch----hHHHHHHHHHhhccccccchhhhhhhhcCCccchh
Q 000201 1215 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS----DTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFN 1290 (1866)
Q Consensus 1215 ~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~----~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~ 1290 (1866)
-.+-|..|+.++..+.+.+.......-+++++..|..+-.+ ..+|+.+.-++.... .|. ..+.+. .
T Consensus 36 L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---~~~----v~dds~---q 105 (970)
T KOG0946|consen 36 LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---SPE----VMDDST---Q 105 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---chh----hcccch---h
Confidence 35567888888888876654444444467777777554333 355666555543321 111 111110 0
Q ss_pred HHHHH-HHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc------HHHHHHHHHhccCCCch
Q 000201 1291 AHALG-ALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG------VESLVSELLKGVGDNQA 1363 (1866)
Q Consensus 1291 ~~al~-~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~------~~~ll~~L~~~l~~~~~ 1363 (1866)
..-+| .+++.+ .. -+..+..++.++...+-.||..++..+..++..-+.+. .+.-+..++..+.|...
T Consensus 106 sdd~g~~iae~f----ik-~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 106 SDDLGLWIAEQF----IK-NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred hhHHHHHHHHHH----Hc-CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 01111 122211 11 14456667777877888899999988888887655422 34445667777788778
Q ss_pred hHHHHHHHHHHHHHhhccch-hhhhHHHHHHHHHHHhCCC---C-hhHHHHHHHHHHHHHhcCC
Q 000201 1364 SIRRSSAYLIGYFYKNSKLY-LVDEAPNMISTLIVLLSDS---D-STTVAAAWEALSRVVASVP 1422 (1866)
Q Consensus 1364 ~vR~~a~~~l~~l~~~~~~~-~~~~~~~il~~L~~ll~d~---~-~~v~~~A~~aL~~l~~~~~ 1422 (1866)
.+|..++..+..+.+..+.. -.-.+.++...|+.++... | .-|..-+...|..+++...
T Consensus 181 ~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 89999999999998754422 1123467777888877632 2 2567778888888887543
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.17 E-value=1.5 Score=55.15 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=81.6
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 898 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 898 ~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
.++...+. +...+.-+++.+......+.. .-+.-+..+++.+.+.+..+|..++..+..+|..-+. |+..+..
T Consensus 27 ~il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaD 99 (556)
T PF05918_consen 27 EILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVAD 99 (556)
T ss_dssp HHHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHH
T ss_pred HHHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHH
Confidence 34444443 244666777777776665543 2345567778888999999998877777777665544 7888888
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHh
Q 000201 978 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1043 (1866)
Q Consensus 978 ~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~ 1043 (1866)
.|.+.|..+++.....+-.++..++..-+...+..+...+... ...+..+|..++..+..-+..+
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhC
Confidence 8899888777776777777777777655544444444444421 1234567887887776655443
No 158
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=5.9 Score=49.93 Aligned_cols=225 Identities=20% Similarity=0.146 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHhhcH-----hhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCC
Q 000201 674 REAAECAARAMMSQLSA-----QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 748 (1866)
Q Consensus 674 R~~a~~al~~i~~~l~~-----~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~ 748 (1866)
-+....-+..++..++. +-+..++..++.+.++++-.+|+-.+++|..+..+....-...++.+...+..-+.|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 34445555556555543 2347788888999999999999999999999888543333334567778888899999
Q ss_pred ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHHHH-HHHHHhccccccCCcchhhhHHHHHHHhhcCCC
Q 000201 749 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 826 (1866)
Q Consensus 749 ~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~ 826 (1866)
.|.||-.|+.||..+-..-.+++. +++..+...+ +||++.||.+ +..+.. -+...|.+.....|-+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~v-----------dnsTlp~IveRarDV~ 206 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISV-----------DNSTLPCIVERARDVS 206 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhcc-----------CcccchhHHHHhhhhh
Confidence 999999999999998754444433 3344444444 4899999854 443321 1234677888778877
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHH-HHhhcCCCChhhHHHHHHHhccc
Q 000201 827 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LIRGMGEENFPDLVSWLLDALKS 905 (1866)
Q Consensus 827 ~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~-l~~~~g~~~~~~l~~~L~~~L~~ 905 (1866)
...|+.+-+- +...+ +- -.--.+.-+..+...+.|....|+.++..+|.. ..+.. + .=++.+++.+.-
T Consensus 207 ~anRrlvY~r---~lpki-d~--r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-d----gni~ElL~~ldv 275 (892)
T KOG2025|consen 207 GANRRLVYER---CLPKI-DL--RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-D----GNILELLERLDV 275 (892)
T ss_pred HHHHHHHHHH---hhhhh-hh--hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-c----ccHHHHHHHhcc
Confidence 7777764332 22211 10 001123456677788999999999988887755 22211 1 123334455554
Q ss_pred CCCHHHHHHHHHHHHH
Q 000201 906 DNSNVERSGAAQGLSE 921 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~ 921 (1866)
..+..++..++.++-.
T Consensus 276 snss~vavk~lealf~ 291 (892)
T KOG2025|consen 276 SNSSEVAVKALEALFS 291 (892)
T ss_pred ccchHHHHHHHHHHHH
Confidence 4444567777766533
No 159
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.14 E-value=1.1 Score=55.92 Aligned_cols=297 Identities=16% Similarity=0.254 Sum_probs=139.6
Q ss_pred cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhc----ccCCCHHHHHHHHHHHH
Q 000201 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL----KSDNSNVERSGAAQGLS 920 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L----~~~~~~~~R~~a~~~L~ 920 (1866)
.++.|+...++..|...+..+...--+-.++|+-.+....+++ +...+++.|...+ ++..++.--...+++++
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~ 97 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIG 97 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Confidence 5778899999999999886533222234566666666655554 2334444444433 45555545556777888
Q ss_pred HHHHHhChh------HH-HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHH
Q 000201 921 EVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 993 (1866)
Q Consensus 921 ~l~~~~g~~------~l-~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~ 993 (1866)
.+++..... .+ +.++|.+...++ .--.+|.||.=+++..++..-. ...+
T Consensus 98 ~lir~~~~~~~~~v~~~E~~L~P~f~~ILq-------------------~dV~EF~PYvfQIla~Lle~~~--~~~~--- 153 (435)
T PF03378_consen 98 ALIRFVCEADPEAVSQFEEALFPPFQEILQ-------------------QDVQEFIPYVFQILAQLLELRP--SSPL--- 153 (435)
T ss_dssp HHHHHS-GGGHH---HHHHHHHHHHHHHHH-------------------TT-TTTHHHHHHHHHHHHHHSS----S----
T ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHcCC--CCCC---
Confidence 777754432 11 223333333222 2223566666666555555432 0111
Q ss_pred HHHHHHHHHHhhcccchhchHHhHhcccCCCchHHH---HHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHH
Q 000201 994 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR---QSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1070 (1866)
Q Consensus 994 a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR---~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l 1070 (1866)
+ +....++|.+... .-|.-| -+.+.++..++.+.+.... . ...+
T Consensus 154 ------------p-~~y~~L~~~Ll~p---~lWe~~gniPalvrLL~a~i~k~~~~i~----~-------------~~~l 200 (435)
T PF03378_consen 154 ------------P-DAYKQLFPPLLSP---ALWERRGNIPALVRLLQAYIKKDPSFIV----A-------------NNQL 200 (435)
T ss_dssp --------------TTTGGGHHHHTSG---GGGGSTTTHHHHHHHHHHHHHHHGGG---------------------S-C
T ss_pred ------------c-HHHHHHHHHHcCc---chhccCCCcCcHHHHHHHHHHhCchhhc----c-------------hhhH
Confidence 1 1122233443322 234321 2334455555544321100 0 0011
Q ss_pred HHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 000201 1071 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGE 1148 (1866)
Q Consensus 1071 ~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~ 1148 (1866)
...+| ++..|...... -..+..++..++.+.|. .+.+|++.++..++.++.+ +...-...-...++-
T Consensus 201 ~~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~ 269 (435)
T PF03378_consen 201 EPILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSL 269 (435)
T ss_dssp HHHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 22222 22233222221 14588899999998886 5789999999999999974 344444444444454
Q ss_pred HHHHhccc--------cccchHHHHhc-----ccCC-CCccchhhHHHHHHHHHHhhch--hhHHhhHhhHHHHHHHhhc
Q 000201 1149 LVRKLGER--------VLPSIIPILSR-----GLKD-PSASRRQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1149 lv~~~~~~--------~l~~llp~L~~-----~L~d-~~~~vr~~a~~~L~~li~~~~~--~~l~~~l~~ll~~l~~~L~ 1212 (1866)
++.+.|+. +.+.+...+.. .++. ..+.-|.-++.++..++..... ......|..++..+.+.+.
T Consensus 270 ~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 270 FAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 44444432 12222211111 1111 1223466666777776654321 1112345555555555554
No 160
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.06 E-value=0.063 Score=56.86 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=86.7
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHHHHHh---hhhh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYL---PRSL 964 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L---~~~~ 964 (1866)
++.++|.+++.+...+.+ -|--|.+++.+++...|.+ .+..+++.+...+++.++++...++.++..| ....
T Consensus 36 y~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 567888888888865544 6778888888888884444 3456666777888999999999999999999 8889
Q ss_pred chhhHhHHHHHHHHHHhhcc-----------CCChHHHHHHHHHHHHHHHhhccc
Q 000201 965 GVQFQNYLQQVLPAILDGLA-----------DENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 965 g~~f~~~l~~il~~ll~~l~-----------d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
|+.+.||+.+++|.+--..+ ....++++...+++..+-..-+++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 99999999999998873221 123456666666666665555444
No 161
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.02 E-value=0.19 Score=63.31 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=126.1
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
++..+-.=..+|..++..+....+ ...++|.+.+.+.+.+ ..-..+-.+-.|+++... ..|...++|.|...+.
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s~--~~~~~~~~p~l~pi~~ 359 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVL-FQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLSQ--NEFGPKMLPALKPIYS 359 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHH-HHhhhhHHHHHhcccc---ccccccchhhhhhhccch--hhhhhhhhHHHHHHhc
Confidence 344455555667777776643333 5678888877664432 111123334455555543 5566677887777666
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhh-
Q 000201 668 D-QVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV- 744 (1866)
Q Consensus 668 D-~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~- 744 (1866)
- ....++-.-.+=++.|.+.++++.+ ..++|.|...+++.+.+++..++..+..+++...-.... ..|+|.+.++
T Consensus 360 ~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~ 437 (700)
T KOG2137|consen 360 ASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLA 437 (700)
T ss_pred cCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcch
Confidence 3 3334454556666778888888877 889999999999999999999999999999987654433 3678877775
Q ss_pred ccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh
Q 000201 745 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 783 (1866)
Q Consensus 745 L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l 783 (1866)
+..++..|+..++-|++.+.+.+....+-+.+..+.+..
T Consensus 438 ~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 438 FKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI 476 (700)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 456778999999999999987665444434444444444
No 162
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.35 Score=59.76 Aligned_cols=151 Identities=25% Similarity=0.366 Sum_probs=114.3
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc----chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh--
Q 000201 813 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK----DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG-- 886 (1866)
Q Consensus 813 ~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~----~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~-- 886 (1866)
..-|.+-++++-++.+||..|+..+-++.-. .+++ ++...++.-...+..++.|+.|.||..|...+..+...
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999988774 3433 23344444556688889999999999998887776654
Q ss_pred --cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhh
Q 000201 887 --MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 963 (1866)
Q Consensus 887 --~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~ 963 (1866)
+++....+++..+.+.+..++...+|..++.+|..++..- ....++.++|.+-..+.+....||-++..++..+-..
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3445566788888888877777789999999998876532 2236778888777778888999999888877766544
Q ss_pred h
Q 000201 964 L 964 (1866)
Q Consensus 964 ~ 964 (1866)
-
T Consensus 333 r 333 (1005)
T KOG1949|consen 333 R 333 (1005)
T ss_pred h
Confidence 3
No 163
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.96 E-value=16 Score=53.25 Aligned_cols=198 Identities=10% Similarity=0.082 Sum_probs=111.4
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh--hHhhhhHHHHHHhc-CCCHhHHHHHHHHHHHHHh
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~--~~~~ll~~L~~~l~-d~~~~vR~~a~~aL~~l~~ 885 (1866)
+.|..+.+.+.+...+++..++..|.+.+..++..+-+.+++.. +-..++..+...+. ....++|+.+.+|+..++.
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 55666777777765666778888998888887765444444332 23445555555554 4567999999999999988
Q ss_pred hcCCC---ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh-C------hhHHHHHHHHHHHHhccC-ChhHHhHHH
Q 000201 886 GMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-G------TVYFEHILPDIIRNCSHQ-RASVRDGYL 954 (1866)
Q Consensus 886 ~~g~~---~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~-g------~~~l~~ll~~l~~~l~~~-~~~vR~~al 954 (1866)
..+.. -|..++..+-....+. ....-..+++.+..++..+ + .+.+..++..+.+..... +..+--.++
T Consensus 1213 s~~~nIkSGWktIF~VLs~aa~d~-~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI 1291 (1780)
T PLN03076 1213 SRVNNVKSGWKSMFMVFTTAAYDD-HKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAI 1291 (1780)
T ss_pred HHHhhhhcCcHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHH
Confidence 76654 3555555444333332 2334456667666665432 1 234555555555554332 233333344
Q ss_pred HHHHHhhhhhch---------------------------------hhHhHHHHHHHHHHh---hccCCChHHHHHHHHHH
Q 000201 955 TLFKYLPRSLGV---------------------------------QFQNYLQQVLPAILD---GLADENESVRDAALGAG 998 (1866)
Q Consensus 955 ~~l~~L~~~~g~---------------------------------~f~~~l~~il~~ll~---~l~d~~~~VR~~a~~al 998 (1866)
..|..++..+-. .-..+..-++|.+.. ...|+.++||..|+..+
T Consensus 1292 ~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076 1292 AFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 444433222100 000112234444433 34577788888888887
Q ss_pred HHHHHhhcc
Q 000201 999 HVLVEHYAT 1007 (1866)
Q Consensus 999 ~~i~~~~~~ 1007 (1866)
-.++..++.
T Consensus 1372 F~iL~~yG~ 1380 (1780)
T PLN03076 1372 FDTLRNHGH 1380 (1780)
T ss_pred HHHHHHhhc
Confidence 777766544
No 164
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.92 E-value=0.38 Score=58.46 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHH
Q 000201 571 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLCE 645 (1866)
Q Consensus 571 ~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-----~~~~~~~~r~~al~al~~L~~ 645 (1866)
...+++..-++ .++....|++|...+.++++..+..... -++.++...+ ....+|+.+++|+..++.++.
T Consensus 210 dP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 210 DPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp SHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred CHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 34566665332 2333456777777777888765432221 2233444443 356789999999999999996
Q ss_pred HhCc------------CchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 646 KLGR------------LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 646 ~l~~------------~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
.... .+..++ ..++|-|. .-.+..+-+|-.|.+.+..+-..++++.+..++|.+...|.+++.-++
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~ 363 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVH 363 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHH
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchh
Confidence 5421 123332 34667665 444567889999999999999999988889999999999999998887
Q ss_pred HHHHHH
Q 000201 713 QSSVQL 718 (1866)
Q Consensus 713 ~~a~~~ 718 (1866)
.-|+.+
T Consensus 364 tyAA~~ 369 (370)
T PF08506_consen 364 TYAAIA 369 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 766554
No 165
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.88 E-value=6.6 Score=48.18 Aligned_cols=174 Identities=21% Similarity=0.189 Sum_probs=113.5
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
..+.++-.+++++..++..||..+++++..+...++..++ .....++..+.+.+-|..+.||..|+.+|..+-+.-+.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 4455666778888999999999999999999886654222 23456777777788899999999999999998875543
Q ss_pred CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHh-HHHHHHHHhhhhhchhh
Q 000201 890 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRD-GYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 890 ~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~-~al~~l~~L~~~~g~~f 968 (1866)
+ -..+...+...++++.+..+|+.+...+.. . ....|.+++.+.+-+...|. .+-.++..+.....-++
T Consensus 166 e-en~~~n~l~~~vqnDPS~EVRr~allni~v-----d----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 166 E-ENRIVNLLKDIVQNDPSDEVRRLALLNISV-----D----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred h-HHHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 3 133455666777888888899877654421 1 22346666666665544443 23334444433322222
Q ss_pred HhHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 000201 969 QNYLQQVLPAILDGLADENESVRDAALGAGH 999 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~~~~VR~~a~~al~ 999 (1866)
.+. +. .+-.++.|.+..|+.++.+++.
T Consensus 236 ~kr---i~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 236 DKR---IL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred cce---eh-hhhhcchhhhhhHHHHHHHHHH
Confidence 222 22 3445677888888887776643
No 166
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=8.6 Score=49.21 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=166.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCC--------CHHH-HHHHHHHHHHHHHHhccc------
Q 000201 1092 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--------SSER-RQVAGRALGELVRKLGER------ 1156 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~--------~~~~-R~~A~~~L~~lv~~~~~~------ 1156 (1866)
|....+|-.|-.+...+..+++..+ +|.++..+-+...-. +.-. +.++..+.|--.-.+.+.
T Consensus 408 dwey~lRPCaE~L~~~lF~~ysqll---vP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~W 484 (978)
T KOG1993|consen 408 DWEYNLRPCAEKLYKDLFDAYSQLL---VPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKW 484 (978)
T ss_pred cceeccchhHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3455678888888877776665543 344444442222211 1112 223333333322222221
Q ss_pred cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHH--h
Q 000201 1157 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS-ILEVRESAGLAFSTLFKS--A 1233 (1866)
Q Consensus 1157 ~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~-~~~vr~~A~~al~~l~~~--~ 1233 (1866)
....++|.+... .+...-.|+.+++.+++.+..--+ .+.-+.+...+...+.|. |.-||-.+++++..+.+. +
T Consensus 485 l~~~llpEl~~~-~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF 560 (978)
T KOG1993|consen 485 LQEALLPELAND-HGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNF 560 (978)
T ss_pred HHHhhCHHhhhc-ccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccC
Confidence 123444544411 112334578888888887653222 223345566677788887 778899999998888664 3
Q ss_pred chhhHhhHHHHHHHhc-------cCCCchhHHHHHHHHHhhccccccchh------hhhhhhcCCccc-----hhHHHHH
Q 000201 1234 GMQAIDEIVPTLLHAL-------EDDQTSDTALDGLKQILSVRTTAVLPH------ILPKLVHLPLSA-----FNAHALG 1295 (1866)
Q Consensus 1234 g~~~~~~ilp~Ll~~L-------~~~~~~~~al~~l~~il~~~~~~ilp~------Lip~L~~~~~~~-----~~~~al~ 1295 (1866)
.++.+.+++|.+...+ ...++.-..+..+..++..-++.+-|+ ++|.+-...... .-..++.
T Consensus 561 ~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 561 SEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLR 640 (978)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHH
Confidence 4455555655544332 333444456666666665544444343 345553322211 1133445
Q ss_pred HHHHHhCCCchhhHhhHHHHHHHhcCCC----CHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhccCCCchhHHHHH
Q 000201 1296 ALAEVAGPGLNFHLGTILPALLSAMGDD----DMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSS 1369 (1866)
Q Consensus 1296 ~La~~~g~~l~~~l~~il~~L~~~l~~~----~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~l~~~~~~vR~~a 1369 (1866)
.+....|..-....+-++|.+ +...|. +...-+.+.+.+...+.+.. ++.+-.++|.+...+.-..... ..+
T Consensus 641 ~lV~alg~qS~~~~~fL~pVI-el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L-~t~ 718 (978)
T KOG1993|consen 641 NLVNALGAQSFEFYPFLYPVI-ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENL-PTV 718 (978)
T ss_pred HHHHHhccCCccchHHHHHHH-HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhH-HHH
Confidence 555666765444444445533 333332 23456777777877776543 2445566666666554332222 334
Q ss_pred HHHHHHH-HhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Q 000201 1370 AYLIGYF-YKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1370 ~~~l~~l-~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+..+... .-..+.-+..|...+.+.+..+++|-..+-..+.+..+..+++.
T Consensus 719 l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t 770 (978)
T KOG1993|consen 719 LMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT 770 (978)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 4444433 22344456677778888888888765555445555555555543
No 167
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.78 E-value=8.2 Score=48.53 Aligned_cols=440 Identities=15% Similarity=0.105 Sum_probs=219.8
Q ss_pred HHHHHHhCcCchhcHH-hHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhcH--hhH--HhHHHHHHhhcCCCC-hhhH
Q 000201 641 ECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKA-WRTK 712 (1866)
Q Consensus 641 ~~L~~~l~~~~~p~v~-~llp~ll~~~~D~~--~~VR~~a~~al~~i~~~l~~--~~v--~~llp~L~~~L~~~~-w~~r 712 (1866)
..++-+..+..++.+. ..+|.++..+...+ ..+....+..+...+..-.. ..+ ...+|.++..+.+++ ..++
T Consensus 34 kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~l 113 (678)
T KOG1293|consen 34 KNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVL 113 (678)
T ss_pred cchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHH
Confidence 3344444554554443 45677776666544 44443344455554442221 112 457889999999888 8999
Q ss_pred HHHHHHHHHHHhhCh---hhHHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc-------chhHHhHHHHHHH
Q 000201 713 QSSVQLLGAMAYCAP---QQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK-------NPEIASLVPTLLM 781 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~---~~~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~-------~~~i~~lv~~L~~ 781 (1866)
.+.+.++..+.+..+ ..+..+...|++.+.-... ..+...+--+. +...+.... |..+.+-+..+..
T Consensus 114 e~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~--~~a~~s~~~~hq~Il~Na~i~ekI~~l~~ 191 (678)
T KOG1293|consen 114 EKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS--RAAHLSSTKDHQLILCNAGILEKINILLM 191 (678)
T ss_pred HHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh--hhccccccchhhheeccccchhhHHHHHH
Confidence 999999999998754 3466677788887776666 21111111111 111111111 1111112222222
Q ss_pred hhCCCChhHH-HHHHHHH---hccccccCC------cchhhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC--
Q 000201 782 GLTDPNDHTK-YSLDILL---QTTFVNTVD------APSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEP-- 847 (1866)
Q Consensus 782 ~l~d~~~~vr-~al~~L~---~~~~~~~~~------~~~l~~l~p--~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-- 847 (1866)
.+ +-.+| .|+..+. ..-+..... .-.-..+.+ .+.+.++++....|..++.++..++..--+.
T Consensus 192 ~~---s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~ 268 (678)
T KOG1293|consen 192 YL---SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDP 268 (678)
T ss_pred hh---hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccc
Confidence 21 11233 2333332 100000000 000112233 4456667777778888888888887632110
Q ss_pred ----cchhhhHhh-h-hHHHHHHhcCCCHhHHHHHHH---HHHHHHhhcCCC-C---hhhHHHHHHHh---cccCCCHHH
Q 000201 848 ----KDMIPYIGL-L-LPEVKKVLVDPIPEVRSVAAR---AIGSLIRGMGEE-N---FPDLVSWLLDA---LKSDNSNVE 911 (1866)
Q Consensus 848 ----~~l~~~~~~-l-l~~L~~~l~d~~~~vR~~a~~---aL~~l~~~~g~~-~---~~~l~~~L~~~---L~~~~~~~~ 911 (1866)
..+.+..+. + .-.....+.+|.+..-..+.. .+..++...... + ..+..+.++.. ++... ...
T Consensus 269 l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~-~~~ 347 (678)
T KOG1293|consen 269 LPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASD-EKY 347 (678)
T ss_pred cccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcc-hhh
Confidence 011111111 1 111223344554332222221 122233333221 1 11222223222 11111 112
Q ss_pred HHHHHHH---HHHHHHHhChhHHHHHHH-----HHHHHhccCChhHHhHHHHHHHHhhhhhc---hhhHhHHHHHHHHHH
Q 000201 912 RSGAAQG---LSEVLAALGTVYFEHILP-----DIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAIL 980 (1866)
Q Consensus 912 R~~a~~~---L~~l~~~~g~~~l~~ll~-----~l~~~l~~~~~~vR~~al~~l~~L~~~~g---~~f~~~l~~il~~ll 980 (1866)
|.-++.. +...+...|...-+++.. .+.......+..++.+++.++..+++... .. +--..+..+++
T Consensus 348 ~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plv 425 (678)
T KOG1293|consen 348 RLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLV 425 (678)
T ss_pred hHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHH
Confidence 3222211 122222333221122221 11111223467778888888877765443 22 23355778888
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhcccc---h-hchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000201 981 DGLADENESVRDAALGAGHVLVEHYATTS---L-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1056 (1866)
Q Consensus 981 ~~l~d~~~~VR~~a~~al~~i~~~~~~~~---i-~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ 1056 (1866)
+.+.|+.-.|...++.++..++-.|+.-. + .-.+..+.+...++...+|..+++.+..+.+.+-
T Consensus 426 qll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d------------ 493 (678)
T KOG1293|consen 426 QLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD------------ 493 (678)
T ss_pred HHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch------------
Confidence 88899998999999999999887775431 1 2255667777888889999999999999876521
Q ss_pred CCCCcchHHHHHHHHHHhchhhhHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcChhh
Q 000201 1057 DDEGASTEAHGRAIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKT 1115 (1866)
Q Consensus 1057 ed~~~~~e~~~~~l~~~lg~~~~~~vl~~-L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~ 1115 (1866)
+.. ..... .++... +....+|+++.|.+.++.++..+.-+..+.
T Consensus 494 --e~~-----k~~~~--------~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 494 --EEE-----KFQLL--------AKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred --HHH-----HHHHH--------HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 000 00011 122222 223468999999999999999998765543
No 168
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.72 E-value=3.3 Score=59.80 Aligned_cols=296 Identities=13% Similarity=0.108 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHH-hc---cC----Ch-hhHHHHHH
Q 000201 1526 KSAILSTLSIIIRKGGIALKPFLPQLQT----TFIKCLQDSTRTVRSSAALALGKLS-AL---ST----RV-DPLVGDLL 1592 (1866)
Q Consensus 1526 r~~al~~L~~L~~~~~~~~~~~lp~L~~----~l~~~l~d~~~~vR~~Aa~aLg~L~-~~---~~----~~-~~~l~~L~ 1592 (1866)
|...+.-|.++...--..++-..+.++. .|.+.-.+++..++.-|...|.++. .+ .. ++ ..++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 5566666666654322233333345444 4445444556778888888887773 22 11 11 24555555
Q ss_pred HHhc-cCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHh----hcC---hhHH
Q 000201 1593 SSLQ-VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQ----CME---DGQL 1664 (1866)
Q Consensus 1593 ~~l~-~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~----~~~---~~~~ 1664 (1866)
..++ +.+.++|+.+++++..++...+.++. .-...|+..+.....++++.+-..+=+.+..++. .++ .+.+
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence 5454 45689999999999999998887765 4566667666655556655555444444443322 222 2333
Q ss_pred HHHHHHHHhccCCCC-cchhhhHHHHHHHH---HhhCC------------------------Cc---cc----CCcchHH
Q 000201 1665 ADLLQELLNLASSPS-WAARHGSVLVFATF---LRHNP------------------------SA---IS----MSPLFLS 1709 (1866)
Q Consensus 1665 ~~~l~~ll~~~~~~~-~~~r~~~~~~L~~~---l~~~p------------------------~~---~~----~~~~~~~ 1709 (1866)
...+.-+..-..... ......++..|..+ +...+ .. +. ...+|-.
T Consensus 1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076 1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence 333333222111111 11111112222211 10000 00 00 0135777
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhc-CCCChh-----hHHHHHHHHHhhcC--------------CCC---
Q 000201 1710 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQS-GPANTT-----VVVDILASVVSALH--------------DDS--- 1766 (1866)
Q Consensus 1710 ~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~-~~~~~~-----~~~~~l~~l~~~l~--------------~~~--- 1766 (1866)
++..+...+.++++++|..|+..+-..+...+.. +++.|. .+.+++..+-.... +++
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 7777777788999999999999998888766544 333333 23333333221100 001
Q ss_pred -----HHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhh
Q 000201 1767 -----SEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAF 1822 (1866)
Q Consensus 1767 -----~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~ 1822 (1866)
.+.-..|+..+..+-.+.-+.+.+.|+.++..+..|+...|..+-+.+-.|+..+.
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li 1488 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLM 1488 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 13344455555544445556677889999999999999999999888889988886
No 169
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.68 E-value=0.016 Score=42.20 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHh
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAY 724 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~ 724 (1866)
+|.+++.++|++|++|..|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555554443
No 170
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.60 E-value=8 Score=47.65 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHhC--cCch-hcHHhHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhhcHhh-----HHhHHHHH
Q 000201 631 KRREGALLAFECLCEKLG--RLFE-PYVIQMLPLLLVAFSDQ--VVAVREAAECAARAMMSQLSAQG-----VKLVLPSL 700 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~--~~~~-p~v~~llp~ll~~~~D~--~~~VR~~a~~al~~i~~~l~~~~-----v~~llp~L 700 (1866)
+.-..|+.+++.+.-... +.+. .....++...+..+.++ +..+.....+++.. +++++.- +..++. .
T Consensus 61 ~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~-~ 137 (372)
T PF12231_consen 61 RLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA-A 137 (372)
T ss_pred HHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH-H
Confidence 334456666666553211 1121 22223555666666554 34555555555543 2333322 232333 2
Q ss_pred HhhcCC--CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-hhHHhHHH
Q 000201 701 LKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVP 777 (1866)
Q Consensus 701 ~~~L~~--~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~~i~~lv~ 777 (1866)
+..+.+ ++-.+-.+.+.++..+....|..+..+...-+|.++..+-+....+|..|...+..+...++. ..+...+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 233332 445666778889999999999999999888889888888888999999987777666655542 22222222
Q ss_pred HHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC-cchhhhHhh
Q 000201 778 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGL 856 (1866)
Q Consensus 778 ~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~-~~l~~~~~~ 856 (1866)
...+....+. .....+.+.+.+.+.++ +.-..+.++-+.+...++.. -+--+++..
T Consensus 218 ~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~--~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 218 EDLQRSLENG---------------------KLIQLYCERLKEMIKSK--DEYKLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHhccccccc---------------------cHHHHHHHHHHHHHhCc--CCcchHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222111111 22333444455555442 11223444444444444433 233467888
Q ss_pred hhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 857 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 857 ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
.+.....+++++++.+|..|..+...++.....+
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999866544
No 171
>PF05536 Neurochondrin: Neurochondrin
Probab=95.53 E-value=12 Score=48.51 Aligned_cols=232 Identities=17% Similarity=0.153 Sum_probs=137.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH--H-hhhcchh-HHHhhhccC-------CChHHHHHHHHHHHHHHh
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL--S-QCLPKIV-PKLTEVLTD-------THPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~--~-~~l~~iv-~~l~~~L~D-------~~~~VR~aA~~aL~~l~~ 765 (1866)
+...+..|+..+-..|..++.++..+....+..- . ..+..+= +.+-++|.- +....+..|+.-|..|+.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 3444555566666667777777777776543210 0 0111111 122233332 234567778888888775
Q ss_pred ---hccchhHHhHHHHHHHhhCCCCh-h-HHHHHHHHHhccccccCCcch--hhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 766 ---VIKNPEIASLVPTLLMGLTDPND-H-TKYSLDILLQTTFVNTVDAPS--LALLVPIVHRGLRERSAETKKKAAQIVG 838 (1866)
Q Consensus 766 ---~i~~~~i~~lv~~L~~~l~d~~~-~-vr~al~~L~~~~~~~~~~~~~--l~~l~p~L~~~l~d~~~~vr~~a~~~l~ 838 (1866)
...++.+...+|.|++.+...+. . +.+|+..|.... .+...... -...+|.+.+.+.+ .+.....|..++.
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 12245677889999999976655 3 446777776533 11111111 11234555554444 4456777888888
Q ss_pred HHhhhcCCC--cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC---------CChhhHHHHHHHhcccCC
Q 000201 839 NMCSLVTEP--KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE---------ENFPDLVSWLLDALKSDN 907 (1866)
Q Consensus 839 ~l~~~l~~~--~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~---------~~~~~l~~~L~~~L~~~~ 907 (1866)
+++...+.. ..-...+..+++.+...+.......+-.+...|+.+....+. .....+...+...+++.-
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~ 244 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL 244 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC
Confidence 887754321 111233445667777777666666677778888888776631 134467777777787777
Q ss_pred CHHHHHHHHHHHHHHHHHhChhH
Q 000201 908 SNVERSGAAQGLSEVLAALGTVY 930 (1866)
Q Consensus 908 ~~~~R~~a~~~L~~l~~~~g~~~ 930 (1866)
....|..+....+.+...+|.+.
T Consensus 245 ~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 245 TPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred CHHHHHHHHHHHHHHHHHhChHh
Confidence 77788888888888888888763
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.52 E-value=0.19 Score=64.91 Aligned_cols=218 Identities=20% Similarity=0.168 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhccCCh------hhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcC
Q 000201 1566 VRSSAALALGKLSALSTRV------DPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH 1639 (1866)
Q Consensus 1566 vR~~Aa~aLg~L~~~~~~~------~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~ 1639 (1866)
=|.+|...||++..+++-. -.++|-+++.|+++..++|....--...|+.--..--.+-..+.........+.+
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4677888888886665421 1356667777887777787776666655554221100000001011111111111
Q ss_pred ---CCHHHHHHHHHHHHHHHhhcChhHH----HHHHHHHHhccCC-CCcchhhhHHHHHHHHHhhCCCcccCCcchHHHH
Q 000201 1640 ---DDDHVRVSAASILGIMSQCMEDGQL----ADLLQELLNLASS-PSWAARHGSVLVFATFLRHNPSAISMSPLFLSIL 1711 (1866)
Q Consensus 1640 ---~~~~vr~~aa~~l~~L~~~~~~~~~----~~~l~~ll~~~~~-~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~ 1711 (1866)
-+++-|.++|.+|..++..++-.+- .+++...+..+++ ..+..|++.+.+|+.+-.+.+..-+. ..-+.-.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence 1357899999999999987765431 1344444555555 36888999999999999887654331 1223345
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhh-------------HHHHH----HHHHhhcCCCCHHHHHHHH
Q 000201 1712 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTV-------------VVDIL----ASVVSALHDDSSEVRRRAL 1774 (1866)
Q Consensus 1712 ~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~-------------~~~~l----~~l~~~l~~~~~~vR~~a~ 1774 (1866)
+.+...+.|+-+++|.+|+-|+|.++....+...+.... ....+ -.++..++|.++-||...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 667777888999999999999999998542211100011 11222 2566778899999999988
Q ss_pred HHHHHHHhhC
Q 000201 1775 SALKSVAKAN 1784 (1866)
Q Consensus 1775 ~~l~~~a~~~ 1784 (1866)
.++..++..+
T Consensus 725 v~ls~~~~g~ 734 (1387)
T KOG1517|consen 725 VALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHhh
Confidence 8888777544
No 173
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.47 E-value=0.44 Score=57.92 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHhcc-----c---------
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGE-----R--------- 1156 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l---~~~~~~~R~~A~~~L~~lv~~~~~-----~--------- 1156 (1866)
....|.+|.+.+..++...++...+.+...++.++... .+.++..+..|+..++.+..+... .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 35679999999999998877666665555555554422 245778888999999988765421 0
Q ss_pred --cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q 000201 1157 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1226 (1866)
Q Consensus 1157 --~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al 1226 (1866)
....++|-|. .-.+..|-.|..||..+...-...+ .+.+..++|.+..+|.+++.-|+..|+.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1234455554 2123456678888887776533322 346688999999999999999999888663
No 174
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.45 E-value=0.59 Score=58.11 Aligned_cols=255 Identities=13% Similarity=0.219 Sum_probs=142.9
Q ss_pred CCCCchHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHh----cc-CChhHHHHHHHHHHH
Q 000201 1543 ALKPFLPQLQTTFIKCLQDS----TRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSL----QV-SDAGIREAILTALKG 1612 (1866)
Q Consensus 1543 ~~~~~lp~L~~~l~~~l~d~----~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l----~~-~~~~vr~~~l~aL~~ 1612 (1866)
.+.|+..+++..+...+..+ |+-+-+...+.+..+- .+.|....+++.|...+ ++ +++..-.-.++++..
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 46788888888887777543 5555555555555441 22344455555555444 33 357777888899999
Q ss_pred HHHhcCcc---ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh----hHHHHHHHHHHhccCCCCcchh--
Q 000201 1613 VLKHAGKS---VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED----GQLADLLQELLNLASSPSWAAR-- 1683 (1866)
Q Consensus 1613 vi~~~~~~---l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~----~~~~~~l~~ll~~~~~~~~~~r-- 1683 (1866)
+++..... .....-+.+++.+...+..+-.+.---+-++++.+....+. +.+..+++.++. ..-|..+
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~---p~lWe~~gn 175 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLS---PALWERRGN 175 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTS---GGGGGSTTT
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcC---cchhccCCC
Confidence 88875432 12245677777777777666444444445566666655551 235556665553 2233322
Q ss_pred -hhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhc
Q 000201 1684 -HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSAL 1762 (1866)
Q Consensus 1684 -~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l 1762 (1866)
-..+-.|.+.++++|..+...+....+.......+.++..+ ..|..-+..++.+.... ....++.+++..+...+
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~--~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPE--ALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HH--HHGGGHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHH
Confidence 22334667778888888866667788888888888776643 34666666666665432 11247777777777776
Q ss_pred CC-CCHH-HHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhc
Q 000201 1763 HD-DSSE-VRRRALSALKSVAKANPSAIMVHVALFGPALAECLK 1804 (1866)
Q Consensus 1763 ~~-~~~~-vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~ 1804 (1866)
+. +... +|+........+++..|+.+...++.+-|-++..+-
T Consensus 252 q~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il 295 (435)
T PF03378_consen 252 QSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMIL 295 (435)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHH
T ss_pred hhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHH
Confidence 53 3333 444444444455566777777777766665555543
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.42 E-value=0.14 Score=54.93 Aligned_cols=136 Identities=24% Similarity=0.326 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCchHHHHH------------HHHHHhcCCCHHHHHHHHHHHHHHHhc-----------
Q 000201 1525 VKSAILSTLSIIIRKGG-IALKPFLPQLQT------------TFIKCLQDSTRTVRSSAALALGKLSAL----------- 1580 (1866)
Q Consensus 1525 vr~~al~~L~~L~~~~~-~~~~~~lp~L~~------------~l~~~l~d~~~~vR~~Aa~aLg~L~~~----------- 1580 (1866)
+|.+|+.+|..+++..+ ..+..|.+.++| .+--.+.|++..+|..|+.++..+..-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 78999999999998843 223333333322 222346789999999999999988431
Q ss_pred c-C--C-------hhhHHHHH----HHHhcc-CChhHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhhcCCCHHH
Q 000201 1581 S-T--R-------VDPLVGDL----LSSLQV-SDAGIREAILTALKGVLKHAGK-SVSSAVKIRVYSVLKDLVYHDDDHV 1644 (1866)
Q Consensus 1581 ~-~--~-------~~~~l~~L----~~~l~~-~~~~vr~~~l~aL~~vi~~~~~-~l~~~~~~~i~~~L~~~l~~~~~~v 1644 (1866)
. + . +...+.++ +..++. .+..+....++++..++...+- .+....+..++..+...+.+.|..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1 1 12223333 233333 3566777889999988887763 4777888888888888888889999
Q ss_pred HHHHHHHHHHHHhhcC
Q 000201 1645 RVSAASILGIMSQCME 1660 (1866)
Q Consensus 1645 r~~aa~~l~~L~~~~~ 1660 (1866)
+..+..|+|.+....+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999876544
No 176
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.40 E-value=0.14 Score=55.01 Aligned_cols=135 Identities=22% Similarity=0.242 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHH-hCcCchhcHHhHHHHH------------HHHcCCCCHHHHHHHHHHHHHHHHhhcHh-------
Q 000201 632 RREGALLAFECLCEK-LGRLFEPYVIQMLPLL------------LVAFSDQVVAVREAAECAARAMMSQLSAQ------- 691 (1866)
Q Consensus 632 ~r~~al~al~~L~~~-l~~~~~p~v~~llp~l------------l~~~~D~~~~VR~~a~~al~~i~~~l~~~------- 691 (1866)
.|.+|+.++..+++. .++.|-.|+..++|.- .....|+++.||.+|+.++..+.....++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 588999999999998 5577888888777743 34567999999999999998888743221
Q ss_pred ----------------hHHhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhh--HHhhhcchhHHHhhhccCCChHH
Q 000201 692 ----------------GVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKV 752 (1866)
Q Consensus 692 ----------------~v~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~--~~~~l~~iv~~l~~~L~D~~~~V 752 (1866)
.+..+-..|+..|.. .+..+-...+++|..+..+.|-. -...+++++..+...+.+.++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 012333444455544 45677778889999999887754 23456777888888888899999
Q ss_pred HHHHHHHHHHHHhh
Q 000201 753 QSAGQTALQQVGSV 766 (1866)
Q Consensus 753 R~aA~~aL~~l~~~ 766 (1866)
|.++..+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
No 177
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.17 Score=57.18 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhHHHHHHhh
Q 000201 627 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKG 703 (1866)
Q Consensus 627 ~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~llp~L~~~ 703 (1866)
+++|...-.++..+..|++.-.+.+.+.+..++..+.+.++++...|-++|..++..+++.+..... +.++-.|+..
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3568777778888888888777777888888888999999999999999999999999998876543 3344444444
Q ss_pred cCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc
Q 000201 704 LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 704 L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
-..++-.+|..|-.+|.+|.+....+ .+++.|...++..++.+|..++.|.......++
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 45566788999999999999886554 455666667888999999999988877765554
No 178
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.14 E-value=1.8 Score=57.27 Aligned_cols=193 Identities=16% Similarity=0.091 Sum_probs=101.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH------
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------ 690 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~------ 690 (1866)
+.++.+.+.+++- ...+ +..++..+.......-..++..+++.+..-..-+...+|..+.-++..+......
T Consensus 359 ~~~i~~~i~~~~~-~~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKI-TPLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCC-CHHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4455666655432 1122 3333444444332222333444443332222234778999998888887763321
Q ss_pred -hhHHhHHHHHHhhcC----CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc---cCCChHHHHHHHHHHHH
Q 000201 691 -QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL---TDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 691 -~~v~~llp~L~~~L~----~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L---~D~~~~VR~aA~~aL~~ 762 (1866)
..+..++|.+.+.|. ..+-..+..++.+||++... ..++.+...+ .+..+.+|.+|++||..
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 112556666665553 34555678889999977652 2223333333 23457899999999998
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCC--hhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHH
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 832 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~ 832 (1866)
++..... .+.+.++....|+. ..+| .|+..+..+ .|....+-.+....-.+++..|+..
T Consensus 507 ~a~~~p~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 507 LAKRDPR----KVQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHhCch----HHHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHHH
Confidence 8764432 23334444444444 3467 466666542 1333333333333334555555543
No 179
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.09 E-value=0.62 Score=49.86 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhc
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNS-KLYLVDEAPNMISTLIVLLSDSDS-TTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~-~~~~~~~~~~il~~L~~ll~d~~~-~v~~~A~~aL~~l~~~ 1420 (1866)
..++.+...+...+++.++..|-.++..++..++.. ...+..+...+++.++..++++++ .+...+..++..+...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 446778888888899999999999999999999887 556668899999999999986554 5677788888777643
No 180
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.60 E-value=13 Score=45.95 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=127.0
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--HH-HH
Q 000201 861 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF-EH 933 (1866)
Q Consensus 861 L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~l-~~ 933 (1866)
+...+..+++.+...++..+..++..-... ..+.+.+++...+++..+......++++++.+.+.-... .+ .+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 334666778899999999999988632222 233466777777765432334445667777776543322 11 12
Q ss_pred HHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCC-ChHHHHHHHHHHHHHHHhhc--
Q 000201 934 ILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA-- 1006 (1866)
Q Consensus 934 ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~-~~~VR~~a~~al~~i~~~~~-- 1006 (1866)
.++.+...++.. +..+--.++.|+--+. +.......+ ..++|.+...+.+. -+.|-.-++.++..++..-.
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLT--FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHh--ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 344444444332 2222222222221111 111111122 35777777766543 34444445556655554211
Q ss_pred -------ccchhchHHhHhcccCCCchH--HHHHHHHHHHHHHHHhcCC------------cccccccCCCCCCCcchHH
Q 000201 1007 -------TTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGT------------SGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 1007 -------~~~i~~llp~l~~~l~d~~w~--vR~~s~~ll~~ll~~~~~~------------~~~~~~~~~~ed~~~~~e~ 1065 (1866)
...++.=++.+.+.+....|. =-...++.+.+.+...... +|...-..-..++.+-.|.
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN 343 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWREN 343 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHH
Confidence 011121112222333333332 1122334444444321110 0100000000122222222
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHH--HHHHHHHhhcCCCHHHHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQVA 1142 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~--l~~~L~~~l~~~~~~~R~~A 1142 (1866)
+.+ +.+.. -+++..|...+ ...++.+-..|+.=++.++.+.|.. +.++.. .-..+.+.+.++++++|..|
T Consensus 344 ~~k-----f~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-r~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 344 ADR-----LNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-KDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred HHH-----HHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-HHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 211 11111 12334443333 2223444566777788888877642 122222 23445666778888888888
Q ss_pred HHHHHHHH
Q 000201 1143 GRALGELV 1150 (1866)
Q Consensus 1143 ~~~L~~lv 1150 (1866)
+.|+..+.
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 88887764
No 181
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.44 E-value=11 Score=46.45 Aligned_cols=298 Identities=16% Similarity=0.051 Sum_probs=143.8
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccch--hH-H
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP--EI-A 773 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~--~i-~ 773 (1866)
.++..|..++|.+...++.+|..++...+... ...++.++..+...++.+ +...+..|+.||..+...-.-. .+ .
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 34446678899999999999998886544321 112233445555555533 3666777888888776422111 11 2
Q ss_pred hHHHHHHHhhCCCChhHHH---HHHHHHhccccccCCc-chhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCc
Q 000201 774 SLVPTLLMGLTDPNDHTKY---SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr~---al~~L~~~~~~~~~~~-~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
..++.|...+.......+- ++-.+--.+|...... -.-..++|.+...++.. ..++-+-+..++-|+...-.+..
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 2445555554432212221 2222222345432111 11235778777777654 34566667778888876321110
Q ss_pred chhhhHh-----hhhHHHHHHhcC---CCHhHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 849 DMIPYIG-----LLLPEVKKVLVD---PIPEVRSVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 849 ~l~~~~~-----~ll~~L~~~l~d---~~~~vR~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
.-..+.. .+.+. .+.+.. .++++.......-..+-+.+.+ ..|++....+....-.-+. ..+...++
T Consensus 265 ~~~~~~~~mv~~~l~~~-l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp-~H~se~FW-- 340 (429)
T cd00256 265 VKKTAALQMVQCKVLKT-LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSP-VHKSEKFW-- 340 (429)
T ss_pred hhhhHHHHHHHcChHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCC-CCCCchHH--
Confidence 0011111 22222 222322 2344433322222222222211 1244444333322111111 01111111
Q ss_pred HHHHHHhChhHHHHHHHHHHHHhc-cCChhHHhHHHHHHHHhhhhhc--hhhHhHHHHHHHHHHhhccCCChHHHHHHHH
Q 000201 920 SEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLADENESVRDAALG 996 (1866)
Q Consensus 920 ~~l~~~~g~~~l~~ll~~l~~~l~-~~~~~vR~~al~~l~~L~~~~g--~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~ 996 (1866)
.+-+..+..+. -+++..+.+.+. +.++.+-.-|+.=+|.+++..| .....-+. ....+++.+.+++++||..|+.
T Consensus 341 ~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 341 RENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHH
Confidence 11112222211 123444555553 3456666667777888887764 33222111 4667888999999999999999
Q ss_pred HHHHHH
Q 000201 997 AGHVLV 1002 (1866)
Q Consensus 997 al~~i~ 1002 (1866)
|...++
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 988765
No 182
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.41 E-value=1.1 Score=56.74 Aligned_cols=223 Identities=11% Similarity=0.121 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhccchh-HHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCC-cchhhhHHHHHHHhhcC-CCHHHH
Q 000201 754 SAGQTALQQVGSVIKNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD-APSLALLVPIVHRGLRE-RSAETK 830 (1866)
Q Consensus 754 ~aA~~aL~~l~~~i~~~~-i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~-~~~l~~l~p~L~~~l~d-~~~~vr 830 (1866)
..-.++|..+...+.... .+.++|.|++.+.+.. .+...+..+. .+.+..+ ..+...++|.|...++- ..-++.
T Consensus 291 s~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~-~vp~~LP~v~--~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~ 367 (700)
T KOG2137|consen 291 SSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK-MVPIVLPLVL--LIAEGLSQNEFGPKMLPALKPIYSASDPKQAL 367 (700)
T ss_pred HHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc-ccccccchhh--hhhhccchhhhhhhhhHHHHHHhccCCcccch
Confidence 333444444444443332 3677777777665432 1111110000 0111111 11234566666665552 222333
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCH
Q 000201 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSN 909 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~ 909 (1866)
..-.+-+..+.+.... ..+.+.++|.|...+++.+..++..+.+.++.+++.++.... ..++|.+.+.....+..
T Consensus 368 l~i~e~mdlL~~Kt~~----e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPP----EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred hhHHhhHHHHHhhCCh----HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 3322223333332211 346678999999999999999999999999999998874432 35778777665555556
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc
Q 000201 910 VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
.++..++.+++.+++.+..-..-+.+..+.+..+..++.+.-+.+.++..++.......+-....++|.++...
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 68889999999988777655444444556666777788888888888877765443311113456667666554
No 183
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.29 E-value=7.4 Score=44.43 Aligned_cols=201 Identities=14% Similarity=0.085 Sum_probs=126.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHH
Q 000201 1511 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGD 1590 (1866)
Q Consensus 1511 ~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~ 1590 (1866)
+.|+-.++...++......+++|..++..-. ...|.+..++....+.++...+..+.+.+..+...+++.-+++..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~ 78 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQP 78 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 3344445555678888899999998876531 455777787777777778888888888888888777777677776
Q ss_pred HHHHh--c--------cCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhc
Q 000201 1591 LLSSL--Q--------VSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLV-YHDDDHVRVSAASILGIMSQCM 1659 (1866)
Q Consensus 1591 L~~~l--~--------~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l-~~~~~~vr~~aa~~l~~L~~~~ 1659 (1866)
++..+ + +...+...+...+++.++...+. .-..++..+...+ .++++.++..+.+.+..++...
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 66651 1 11245556666788888876554 4455555666666 6777888888888888888322
Q ss_pred ChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccC----CcchHHHHHHHHhhhcCCChh
Q 000201 1660 EDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISM----SPLFLSILDRLKSSLKDEKFP 1724 (1866)
Q Consensus 1660 ~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~----~~~~~~~~~~l~~~~~~~~~~ 1724 (1866)
-- ++.....-+.+.+..+. |-.....+..++..-|..-.. +.+...++..+.++..+.+..
T Consensus 154 vv-d~~s~w~vl~~~l~~~~---rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 154 VV-DFYSAWKVLQKKLSLDY---RPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred hc-cHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 11 13333333334332222 333344455555554443332 235566788888888777753
No 184
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=36 Score=47.47 Aligned_cols=172 Identities=14% Similarity=0.048 Sum_probs=104.7
Q ss_pred HHHHHHhHhhhcc-chhcHHHHHHHHHh-ccCCCchhHHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHHhCCCChhH
Q 000201 1330 LAKEAAETVTLVI-DEEGVESLVSELLK-GVGDNQASIRRSSAYLIGYFY-KNSKLYLVDEAPNMISTLIVLLSDSDSTT 1406 (1866)
Q Consensus 1330 ~a~~~l~~l~~~~-~~~~~~~ll~~L~~-~l~~~~~~vR~~a~~~l~~l~-~~~~~~~~~~~~~il~~L~~ll~d~~~~v 1406 (1866)
.+..|.+.+..+. +....+.++..+.. ...+..|++|.+++..+..+. .+.-........++...+...++|.+.+|
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~v 1585 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEV 1585 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHH
Confidence 3334444444433 33446777777764 345677999999999887663 33322344556788888889999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhh--ccCCHHHHH
Q 000201 1407 VAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL--ISGSAELRE 1484 (1866)
Q Consensus 1407 ~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L--~~~~~~~r~ 1484 (1866)
|+.|..+|+.+++...-+..++-.... .... .+.+.....
T Consensus 1586 re~Aa~~Lsgl~~~s~~~~~~~k~d~~--------------------------------------~~~~~s~s~~~i~~H 1627 (1710)
T KOG1851|consen 1586 REEAAKCLSGLLQGSKFQFVSDKRDTT--------------------------------------SNILQSKSKDEIKAH 1627 (1710)
T ss_pred HHHHHHHHHHHHhccccccchHhhhhh--------------------------------------hhhhhhcchHHHHhh
Confidence 999999999998754332222000000 0001 111233455
Q ss_pred HHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q 000201 1485 QAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542 (1866)
Q Consensus 1485 ~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~ 1542 (1866)
.|..++|.++-.. +-.+..+++..+..+.+..++ +..++.++=.++.+.-+....
T Consensus 1628 gavlgLgA~Vlaf-Py~vP~wip~~L~~Ls~fa~e--~~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1628 GAVLGLGAIVLAF-PYVVPLWIPKPLMNLSSFARE--SAAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred hhHHHHHHHHHhc-cccchhhhHHHHHHHHhhcCC--chHHHHHHHHHHHHHHHHhhh
Confidence 7788999999877 444555555554444444444 467888888888776554433
No 185
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.14 E-value=0.52 Score=50.02 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChh----------------------------------h-----H
Q 000201 1548 LPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVD----------------------------------P-----L 1587 (1866)
Q Consensus 1548 lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~----------------------------------~-----~ 1587 (1866)
.|+|++.+++.+... +..+|..+.+++|.|..+.|..- . .
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vv 87 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVV 87 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHH
Confidence 389999999999887 78999999999999965433211 1 1
Q ss_pred HHHHHHHhccCC-hhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1588 VGDLLSSLQVSD-AGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMS 1656 (1866)
Q Consensus 1588 l~~L~~~l~~~~-~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~ 1656 (1866)
+..|+..++++. ..-+..+++|+-.+++..|.+. -++.+++++.+...+.+.++..|+..-.-++.+.
T Consensus 88 i~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 88 INALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 223344444332 3334456666666666666655 3677777777666666555555555444444443
No 186
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.07 E-value=1.1 Score=49.98 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..-+++.....|....+.+.|.+|..+|-. ..|...+.+ ..+.++.+.+ ++-++-..-...++.+-.+.....-+
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvP-YFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iF 270 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVP-YFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIF 270 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCcee
Confidence 445566666666655555667777666532 223333322 2233443333 33333344444455555555555556
Q ss_pred chhcHHhHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhcHhh--H-HhHHHHHHhhcC--CCChhhHHHH
Q 000201 651 FEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLE--DKAWRTKQSS 715 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~------~D~~~----~VR~~a~~al~~i~~~l~~~~--v-~~llp~L~~~L~--~~~w~~r~~a 715 (1866)
..||+.+++|.++.|+ ++++. .+|+-|+..++.++++++... . +.+...+++..- +....+.++|
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGa 350 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGA 350 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhh
Confidence 7999999999988765 23333 499999999999999887632 2 445555555443 3457888999
Q ss_pred HHHHHHHHhh
Q 000201 716 VQLLGAMAYC 725 (1866)
Q Consensus 716 ~~~L~~l~~~ 725 (1866)
+..+..+...
T Consensus 351 lkgls~l~ke 360 (450)
T COG5095 351 LKGLSILSKE 360 (450)
T ss_pred hhhhhhhchh
Confidence 9888877654
No 187
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.07 E-value=0.55 Score=56.71 Aligned_cols=90 Identities=27% Similarity=0.344 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc----------CCCHhHHHHHHHHHHHHHhhcCCCC---hhhHHH
Q 000201 831 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVAARAIGSLIRGMGEEN---FPDLVS 897 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~----------d~~~~vR~~a~~aL~~l~~~~g~~~---~~~l~~ 897 (1866)
....+++..|.. +..-.+.+|+-+++|.+..++. +.+|.+|..|+..++.++..++..+ .+.++.
T Consensus 235 ~~lm~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~ 312 (343)
T cd08050 235 IYLMRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITR 312 (343)
T ss_pred HHHHHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 334445555544 3335678999999999998873 4578999999999999999998763 234444
Q ss_pred HHHHhcccCCC-HHHHHHHHHHHHHH
Q 000201 898 WLLDALKSDNS-NVERSGAAQGLSEV 922 (1866)
Q Consensus 898 ~L~~~L~~~~~-~~~R~~a~~~L~~l 922 (1866)
.+.+.+.+... ....-+++.+|+.+
T Consensus 313 tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 313 TLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 45555554432 22356777777654
No 188
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=1.1 Score=52.24 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhh------HHHHHHHH
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDP------LVGDLLSS 1594 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~------~l~~L~~~ 1594 (1866)
.+.+-|..++.-|..+++.+.....-.--..+..++..+++++..+|..|+..+|....-.|.... .+..|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 356778888988888888765432111112234455588999999999999999999765555433 35567777
Q ss_pred hcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhcChhH--HHH-HH
Q 000201 1595 LQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYH--DDDHVRVSAASILGIMSQCMEDGQ--LAD-LL 1668 (1866)
Q Consensus 1595 l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~--~~~~vr~~aa~~l~~L~~~~~~~~--~~~-~l 1668 (1866)
+.. .+.++|..++.|+..+|.+......+-..-.=+..|...+.+ .+-..+..+..+++.+......+. +.. .+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 753 457889999999999999876543321111224556666666 445566788899999887654432 111 12
Q ss_pred HH-HHhccCCCCcchhhhHHHHHHHHHhhCC
Q 000201 1669 QE-LLNLASSPSWAARHGSVLVFATFLRHNP 1698 (1866)
Q Consensus 1669 ~~-ll~~~~~~~~~~r~~~~~~L~~~l~~~p 1698 (1866)
+. +..+....++..+..++.++...+...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 22 2344555566666666666666665543
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.06 E-value=0.32 Score=51.55 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=89.0
Q ss_pred hcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccchhHHh-HHHHHHHhh-CCCChhHHHHHHHHHhccccccCCcch
Q 000201 734 LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIAS-LVPTLLMGL-TDPNDHTKYSLDILLQTTFVNTVDAPS 810 (1866)
Q Consensus 734 l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~~i~~-lv~~L~~~l-~d~~~~vr~al~~L~~~~~~~~~~~~~ 810 (1866)
+|.+++.+++.++ +.++.+|.++.++||.+|.. +|+... +....-... .+.+...... .+.........++-.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ee~y 83 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSIQKSLDSKSSENSNDESTDI--SLPMMGISPSSEEYY 83 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcccccCCccccccccccchhh--HHhhccCCCchHHHH
Confidence 4778888888776 44689999999999999863 343311 111000000 0101111110 111111111222233
Q ss_pred hhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 811 LALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~~~-~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
...++..+.+.++|.+- .-...+.+++..+.+.++. + ..+|+++++|.+...+.......|+.....|+.++..
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~-cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-K-CVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-C-chhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44456677778888653 3344677777777765544 2 3899999999999999977778999888888888764
No 190
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=32 Score=45.63 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=59.7
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
..++.+.....+++|++|.+-......+...|...+..+...++..++.+-+|.+|+++..+.+.+..+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~~n 352 (1014)
T KOG4524|consen 278 IALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQLHN 352 (1014)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 344555555578899999998888877777777777777667888889999999999999999999988776553
No 191
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.74 E-value=0.96 Score=50.35 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcChhhhhhhhhhhhHHHHHHh-----cCC----CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000201 1486 AALGLGELIEVTSEQSLKEFVIPITGPLIRII-----GDR----FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1486 a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l-----~~~----~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~ 1556 (1866)
.......+.+.. .--+.||+.+++|.++..+ +.. ..-.+|..|...++-.+.+++..++..-|.+.++++
T Consensus 256 v~~m~~sLL~N~-~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTll 334 (450)
T COG5095 256 VVMMYSSLLKNK-YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLL 334 (450)
T ss_pred HHHHHHHHhcCC-ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHH
Confidence 344444555443 3356788888888776543 322 112478888888999999999999888999999999
Q ss_pred HHhcCC--CHHHHHHHHHHHHHHH------hccCChhhHHHHHHHHhcc
Q 000201 1557 KCLQDS--TRTVRSSAALALGKLS------ALSTRVDPLVGDLLSSLQV 1597 (1866)
Q Consensus 1557 ~~l~d~--~~~vR~~Aa~aLg~L~------~~~~~~~~~l~~L~~~l~~ 1597 (1866)
|.+-|. -....--|.+++..+. .+.|+.+-+...+.+.+..
T Consensus 335 KafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~ 383 (450)
T COG5095 335 KAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK 383 (450)
T ss_pred HHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc
Confidence 998886 3467777888888772 1356777666666555543
No 192
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=93.72 E-value=19 Score=45.52 Aligned_cols=168 Identities=19% Similarity=0.292 Sum_probs=92.3
Q ss_pred CHhHHHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHH
Q 000201 869 IPEVRSVAARAIGSLIRGMGEE------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILP 936 (1866)
Q Consensus 869 ~~~vR~~a~~aL~~l~~~~g~~------------~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~ 936 (1866)
....|....+++..+...+-+. +.+-+++.+.+.+.+.. ..+|-.++.+++++...+|....+.++.
T Consensus 209 ~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~-~~~rf~~a~~~aki~srl~w~l~~sfi~ 287 (993)
T COG5234 209 NSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSID-SFVRFSAAKGLAKIISRLPWNLAESFID 287 (993)
T ss_pred HHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCccccc-HHHHHHHHhhHHHHHhhcccccHHHHHH
Confidence 3445555566666665554331 23345555555554433 4588899999999998887653333322
Q ss_pred ---HH-----HHHhcc------CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC--------hHHHHHH
Q 000201 937 ---DI-----IRNCSH------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--------ESVRDAA 994 (1866)
Q Consensus 937 ---~l-----~~~l~~------~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~--------~~VR~~a 994 (1866)
.. +..++. .++.+..+++..++ ++...+-++...+ +.|.+.+++.-+. ..+|+++
T Consensus 288 ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss 364 (993)
T COG5234 288 IIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSS 364 (993)
T ss_pred HHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhh--hhhheccccceeehheeeeccceeeccc
Confidence 11 111111 25556666666666 6666555433322 4555666665332 2466665
Q ss_pred HHHHHHHHHhhcccchhc----hHHhHh-cccCCCchHHHHHHHHHHHHHH
Q 000201 995 LGAGHVLVEHYATTSLPL----LLPAVE-DGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 995 ~~al~~i~~~~~~~~i~~----llp~l~-~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
.=-+..+...++....+. +.-.+. ..++|+.-.+|+++.-.+-+++
T Consensus 365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence 544444444444443333 222222 3678888899998877766655
No 193
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.62 E-value=1.8 Score=46.29 Aligned_cols=135 Identities=23% Similarity=0.127 Sum_probs=90.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 1548 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l 1548 (1866)
.-+...+.+.++..|-.++..++.+++..+.+.+..+....+..++.+++...+..++..++.++..++......
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~----- 102 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK----- 102 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-----
Confidence 334455667778889999999999999887777877778888888999988778889999999999998766432
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHH
Q 000201 1549 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628 (1866)
Q Consensus 1549 p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~ 1628 (1866)
|.+.+ ..+ .|++..+++.+++.+++ ......++.+|..++...+..+. ++..+
T Consensus 103 p~l~R--------------ei~----------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r-p~~~k 155 (165)
T PF08167_consen 103 PTLTR--------------EIA----------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR-PFANK 155 (165)
T ss_pred CchHH--------------HHh----------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc-chHHH
Confidence 22211 111 14444555555555543 34566777777777776665544 45555
Q ss_pred HHHHHHH
Q 000201 1629 VYSVLKD 1635 (1866)
Q Consensus 1629 i~~~L~~ 1635 (1866)
+-..+..
T Consensus 156 i~~~l~~ 162 (165)
T PF08167_consen 156 IESALLS 162 (165)
T ss_pred HHHHHHH
Confidence 5444433
No 194
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=10 Score=47.66 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh-----hhHHHHHH---HHHHHHcCCChhHHHHHHHHHHHHHhhh----C
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSR---LLDQLMKSDKYGERRGAAFGLAGVVKGF----G 607 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~-----~~~~~l~~---ll~~L~~~~~~~~R~~A~~~L~~l~~~~----g 607 (1866)
+.+...|+.++..||+.++..+..+.+..++ ....+++. .+..|+.++-+.+|..|..++..+.... +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 3456677888888999888876655544332 12223332 3445667777899999999988777633 2
Q ss_pred cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000201 608 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ 687 (1866)
Q Consensus 608 ~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~ 687 (1866)
+..+ .+++..+..-+..+....+|-+...++..++...-. .|.+.+++|.+-..+.|....||-++.+.+-.|- .
T Consensus 257 ~~i~--~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik-~ 331 (1005)
T KOG1949|consen 257 PTIL--IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK-A 331 (1005)
T ss_pred HHHH--HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH-h
Confidence 2222 244444444444444456787777777777655432 5667889998888999999999999988877663 2
Q ss_pred hcHhhHHhH--HHHHHhhcCCCC
Q 000201 688 LSAQGVKLV--LPSLLKGLEDKA 708 (1866)
Q Consensus 688 l~~~~v~~l--lp~L~~~L~~~~ 708 (1866)
.....+-.+ +..++..|..++
T Consensus 332 vra~~f~~I~~~d~~l~~L~~d~ 354 (1005)
T KOG1949|consen 332 VRAAKFWKICPMDHILVRLETDS 354 (1005)
T ss_pred hhhhhhhccccHHHHHHHHhccc
Confidence 322222222 334555555444
No 195
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.47 E-value=30 Score=44.18 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred hcchhHHHhhhccCCC-hHHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhhCCCC--hhHHHHHHHHHhccccccCCc
Q 000201 734 LPKIVPKLTEVLTDTH-PKVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~-~~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l~d~~--~~vr~al~~L~~~~~~~~~~~ 808 (1866)
+..++..++..+..+. +..=.++...+..+.. .+++..+..++..|+....-.+ +..-.++..|....
T Consensus 174 i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~------- 246 (464)
T PF11864_consen 174 ISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSH------- 246 (464)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCc-------
Confidence 3455555555554332 3334667777777654 4455567777777777654331 11223444444311
Q ss_pred chhhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHhhhcCCCcchh--hh-HhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 809 PSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMI--PY-IGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~------d~~~~vr~~a~~~l~~l~~~l~~~~~l~--~~-~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
.....+-.+...+. .++..+-+.|...++.+.-..+. +.+. ++ ...+++.+...++.+++.|-......
T Consensus 247 -~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~ 324 (464)
T PF11864_consen 247 -LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLL 324 (464)
T ss_pred -cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCCCeehHHHHHH
Confidence 11233444444442 23456667788888877653322 1111 11 12489999999997777766666666
Q ss_pred HHHHH-hhcC
Q 000201 880 IGSLI-RGMG 888 (1866)
Q Consensus 880 L~~l~-~~~g 888 (1866)
+..+. ..++
T Consensus 325 i~~ll~~~~~ 334 (464)
T PF11864_consen 325 INRLLDGKYG 334 (464)
T ss_pred HHHHHhHhhh
Confidence 66666 4443
No 196
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=36 Score=45.11 Aligned_cols=275 Identities=18% Similarity=0.219 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchh--------cHHHHHHHHHhccCCCc
Q 000201 1291 AHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEE--------GVESLVSELLKGVGDNQ 1362 (1866)
Q Consensus 1291 ~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~ll~~L~~~l~~~~ 1362 (1866)
..+++.++...|..|.+.+-..+=.++..+.+++..++..+..|+-.|+..++.. ..+-++..+...++...
T Consensus 569 ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~ 648 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSG 648 (1014)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCC
Confidence 4567888888899998888777777888888999999999999999888866432 23445555555554321
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhh-hHHHHHHHHhhhh
Q 000201 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPS-YIKVIRDAISTSR 1441 (1866)
Q Consensus 1363 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~-l~~~l~~~l~~~~ 1441 (1866)
. ...+-..+..++.+++....+++.++++.++..++.....-...-+..|-.+++...+.+... ++....+......
T Consensus 649 ~--s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~ 726 (1014)
T KOG4524|consen 649 M--SPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQS 726 (1014)
T ss_pred C--CchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 1 122344555666666666777888888888777764332111111222223332222111111 1111111111000
Q ss_pred hhhhhhhcCCccccCCcCCCCCc-----------cccHHHHH-----HhhccCC----HHHHHHHHHHHHHHHhhcC-hh
Q 000201 1442 DKERRKKKGGPILIPGFCLPKAL-----------QPLLPIFL-----QGLISGS----AELREQAALGLGELIEVTS-EQ 1500 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l-----------~~ilp~l~-----~~L~~~~----~~~r~~a~~~L~~l~~~~~-~~ 1500 (1866)
.. .. .. .|+.+ ..+.+.+. .++..+. ++.+..= --.+=-..+. ..
T Consensus 727 ~k-----~l--~e-----~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e--~edens~~~d~ep 792 (1014)
T KOG4524|consen 727 TK-----VL--NE-----LPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEE--VEDENSEYTDTEP 792 (1014)
T ss_pred HH-----Hh--hc-----chhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCC--ccccccCCCCCCC
Confidence 00 00 00 01111 01111111 1121111 0000000 0000000000 00
Q ss_pred hhhh---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHH---HHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000201 1501 SLKE---FVIPITGPLIRIIGDRFPWQVKSAILSTLSI---IIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALAL 1574 (1866)
Q Consensus 1501 ~l~~---~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~---L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aL 1574 (1866)
...+ .+..|++--++.+++. +-.+|..+|.+|.. ++...+..+.|.+.+.|+.++.++.+.++-+-..|..|+
T Consensus 793 ~~~~qv~iv~kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i 871 (1014)
T KOG4524|consen 793 ILPDQVKIVLKILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCI 871 (1014)
T ss_pred CCChHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHH
Confidence 0111 2445666667777763 66788999988874 556667778888999999999999999999999999999
Q ss_pred HHHHhccC
Q 000201 1575 GKLSALST 1582 (1866)
Q Consensus 1575 g~L~~~~~ 1582 (1866)
-++....+
T Consensus 872 ~~m~~~sg 879 (1014)
T KOG4524|consen 872 EQMGKYSG 879 (1014)
T ss_pred HHHHHHhh
Confidence 98876544
No 197
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.33 E-value=26 Score=43.16 Aligned_cols=310 Identities=16% Similarity=0.163 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHHHhhcC----hhhhhhhhhhhhHHHHHHhcC------CCCHHHHHHHHHHHHHHHH------hcCC
Q 000201 1479 SAELREQAALGLGELIEVTS----EQSLKEFVIPITGPLIRIIGD------RFPWQVKSAILSTLSIIIR------KGGI 1542 (1866)
Q Consensus 1479 ~~~~r~~a~~~L~~l~~~~~----~~~l~~~v~~i~~~Li~~l~~------~~~~~vr~~al~~L~~L~~------~~~~ 1542 (1866)
+.+.|..|..++....+... ...+...++.++..+.+-+.. .++..+-..|+.+++.++. .++.
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 44556667766666554432 123444444444444443332 2356777899999997764 2232
Q ss_pred CCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHhcc--CChhHHHHHHHHHHH
Q 000201 1543 ALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKLSALST------RVDPLVGDLLSSLQV--SDAGIREAILTALKG 1612 (1866)
Q Consensus 1543 ~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~~~~------~~~~~l~~L~~~l~~--~~~~vr~~~l~aL~~ 1612 (1866)
+ +.--++...+..+.++ +..+...+..+|..= .+++ ++..++. .+..+.+ +...+....+.+++.
T Consensus 86 d---~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 86 D---FASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-KFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred H---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHH
Confidence 2 2223566667777776 567777777776532 1111 2222222 2223332 345677778889999
Q ss_pred HHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHhccCCCCcchhhhHHHHHH
Q 000201 1613 VLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ-LADLLQELLNLASSPSWAARHGSVLVFA 1691 (1866)
Q Consensus 1613 vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~-~~~~l~~ll~~~~~~~~~~r~~~~~~L~ 1691 (1866)
++.+.+..|. .....=++.+...+-+....+|..+..+.-.+...++++. +...+...++....+.
T Consensus 161 ll~q~p~~M~-~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~------------ 227 (372)
T PF12231_consen 161 LLSQFPQQMI-KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG------------ 227 (372)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc------------
Confidence 9998887766 3334334455555556677788887666655555555432 3333333332211111
Q ss_pred HHHhhCCCcccCCcchHHHHHHHHhhhcC-CChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHH
Q 000201 1692 TFLRHNPSAISMSPLFLSILDRLKSSLKD-EKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVR 1770 (1866)
Q Consensus 1692 ~~l~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR 1770 (1866)
.+.+.+.+.+...+.+ ++....--...++-.++... ..+.+.++.+.|...-.+++++++.+|
T Consensus 228 -------------~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~---~~~~w~~~n~wL~v~e~cFn~~d~~~k 291 (372)
T PF12231_consen 228 -------------KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS---RLDSWEHLNEWLKVPEKCFNSSDPQVK 291 (372)
T ss_pred -------------cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc---hhhccHhHhHHHHHHHHHhcCCCHHHH
Confidence 1223333333333333 11100000111111111110 022346788888888889999999999
Q ss_pred HHHHHHHHHHHhh---CcchhhhhHhhHHHHHHhhhccCc-c----hhhhhHHHHHHHhh
Q 000201 1771 RRALSALKSVAKA---NPSAIMVHVALFGPALAECLKDGS-T----PVRLAAERCAVHAF 1822 (1866)
Q Consensus 1771 ~~a~~~l~~~a~~---~~~~~~~~l~~l~p~l~~~~~~~~-~----~vk~aae~a~~~l~ 1822 (1866)
..|..+=+.+... ........+..+.-++....+.+. . .++.++..++..++
T Consensus 292 ~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 292 IQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 9999988877653 222235567777777777766543 3 56666666666655
No 198
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.28 E-value=32 Score=44.02 Aligned_cols=383 Identities=14% Similarity=0.091 Sum_probs=199.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh--ccchhhhhH
Q 000201 1312 ILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN--SKLYLVDEA 1388 (1866)
Q Consensus 1312 il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~--~~~~~~~~~ 1388 (1866)
+++.++..++++..-++..+++.+..+-.-..+.+ ...+.+.....+++++..++..|+.++..|..+ ....++.++
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahV 540 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHV 540 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence 45666667777777888888888888744444433 556666667777788888999999999988653 355688999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcc---hhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCcc
Q 000201 1389 PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE---VQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQ 1465 (1866)
Q Consensus 1389 ~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~---~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~ 1465 (1866)
|.+++.|+.+-++-+-++.....+. ++...+.+ .-+.+...+.+.+
T Consensus 541 p~tmekLLsLSn~feiD~LS~vMe~---fVe~fseELspfa~eLa~~Lv~qF---------------------------- 589 (970)
T COG5656 541 PETMEKLLSLSNTFEIDPLSMVMES---FVEYFSEELSPFAPELAGSLVRQF---------------------------- 589 (970)
T ss_pred hHHHHHHHHhcccccchHHHHHHHH---HHHHhHHhhchhHHHHHHHHHHHH----------------------------
Confidence 9999999999887776655544333 33322222 2222332222211
Q ss_pred ccHHHHHHhhccC-----CHHHHHHHHH----HHHHHHhhcCh-hhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000201 1466 PLLPIFLQGLISG-----SAELREQAAL----GLGELIEVTSE-QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSI 1535 (1866)
Q Consensus 1466 ~ilp~l~~~L~~~-----~~~~r~~a~~----~L~~l~~~~~~-~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~ 1535 (1866)
+.+....+.++ ..+.++.++. ++..++-.... ..+-.+.....-|.+..+-...-.+.-.-++..+..
T Consensus 590 --lkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg 667 (970)
T COG5656 590 --LKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDG 667 (970)
T ss_pred --HHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 11111111111 1123333332 22333322210 112223333444444433221222333334443332
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccCC-------hhhHHHHHHHH-hccCCh--hHHH
Q 000201 1536 IIRKGGIALKPFLPQLQTTFIKCLQDST-RTVRSSAALALGKLSALSTR-------VDPLVGDLLSS-LQVSDA--GIRE 1604 (1866)
Q Consensus 1536 L~~~~~~~~~~~lp~L~~~l~~~l~d~~-~~vR~~Aa~aLg~L~~~~~~-------~~~~l~~L~~~-l~~~~~--~vr~ 1604 (1866)
..-. -..+.|-.+.+...+.+++.++. ...-..++-++.+++.++.. .-..+-++... +.+.+. .=+.
T Consensus 668 ~tf~-skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~ 746 (970)
T COG5656 668 YTFM-SKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFI 746 (970)
T ss_pred hhHH-HHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHH
Confidence 2111 11233566777888888888875 46777888889998776522 11222333322 233332 2255
Q ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhcChhHHHHHHH-------HHHhcc
Q 000201 1605 AILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY--HDDDHVRVSAASILGIMSQCMEDGQLADLLQ-------ELLNLA 1675 (1866)
Q Consensus 1605 ~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~--~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~-------~ll~~~ 1675 (1866)
..++-+..++-+.+..+...|++.+.+..-..+. +....-+..+.+++-+-.-.-|.+. .++++ ++-.|.
T Consensus 747 ~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eT-LqiLe~qg~l~~FF~~wf 825 (970)
T COG5656 747 GVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKET-LQILEEQGYLQSFFEKWF 825 (970)
T ss_pred HHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHH-HHHHHHcCcHHHHHHHHH
Confidence 5667777777778887777888877776653332 2222233444444322221223222 12221 222454
Q ss_pred CCCC-c---chhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHH
Q 000201 1676 SSPS-W---AARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREAS 1729 (1866)
Q Consensus 1676 ~~~~-~---~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a 1729 (1866)
+.-. + ..+.-+++++..+++..-........++.+-+.++....+=-..+|..+
T Consensus 826 ~~ipkfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nLg~vlv~l~~sLPeAir~ra 883 (970)
T COG5656 826 SQIPKFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRA 883 (970)
T ss_pred hcCcchhhhhhhHhHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 4421 1 1233456677777776533333345677777777776655444555544
No 199
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.98 E-value=1.6 Score=46.06 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=76.7
Q ss_pred chhcHHhHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhcHh-hHHhHHHHHHhhcCCCChhh
Q 000201 651 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~------------------D~~~~VR~~a~~al~~i~~~l~~~-~v~~llp~L~~~L~~~~w~~ 711 (1866)
..|++..++|.++.-.. |.--++|++|-+++..+....... .+..++..+..+|.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 35677788888876543 344589999999999998865443 357789999999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc
Q 000201 712 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 746 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~ 746 (1866)
|.-+...|..++..+|..+...+..+++.+-..|+
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998888774
No 200
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=36 Score=42.53 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=151.1
Q ss_pred hhHhhhhHHHHHHhcCC---CHhHHHHHHHHHHHHHh--hcCCCCh---hhHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q 000201 852 PYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIR--GMGEENF---PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 923 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~---~~~vR~~a~~aL~~l~~--~~g~~~~---~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~ 923 (1866)
++...++..+..+++++ ...+-..+.+++++-.. .+..+.+ ..++..++..++.+. .-..+..++..+.
T Consensus 149 ~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~---lhe~At~cic~ll 225 (559)
T KOG2081|consen 149 AQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDE---LHEEATECICALL 225 (559)
T ss_pred HhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccch---hhHHHHHHHHHHH
Confidence 34444555556666543 24555677777777666 3333322 245666677776432 2234445544433
Q ss_pred HHhChh----HHH-------HHHHHHHHHh-ccCChhHHhHHHHHHHHhhhhhchhhHh---HHHHHHHHHHhhccCCCh
Q 000201 924 AALGTV----YFE-------HILPDIIRNC-SHQRASVRDGYLTLFKYLPRSLGVQFQN---YLQQVLPAILDGLADENE 988 (1866)
Q Consensus 924 ~~~g~~----~l~-------~ll~~l~~~l-~~~~~~vR~~al~~l~~L~~~~g~~f~~---~l~~il~~ll~~l~d~~~ 988 (1866)
...-.. .+. .+++...... ...+...++++...|..++..+-..... +.-.++..++-...+.+.
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~ 305 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDT 305 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCch
Confidence 322110 011 2233333322 2346666777777777666544321110 112233344444455555
Q ss_pred HHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchH--HHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchH--
Q 000201 989 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR--IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE-- 1064 (1866)
Q Consensus 989 ~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~--vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e-- 1064 (1866)
+|-+..+..+..+-..+.... |...+ .|--..+++.-+.+++.=..+ .++.-+++.+..
T Consensus 306 evie~SF~fW~~lse~l~~~~-------------~~~~~~~frpy~~rLvs~l~~h~qlp~~----~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTD-------------DDEALGIFRPYFLRLVSLLKRHVQLPPD----QFDLPEEESEFFEF 368 (559)
T ss_pred hhhhhhHHhhhhhHHHHhccc-------------cHHHHHHhHHHHHHHHHHHHHHccCCCc----cccCccchhHHHHH
Confidence 555555544444333221110 00011 133334455555444321110 001001111111
Q ss_pred -----HHHHHHHHHhchhhhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHH
Q 000201 1065 -----AHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1137 (1866)
Q Consensus 1065 -----~~~~~l~~~lg~~~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~ 1137 (1866)
++++-..-.+|. ++.++.+++.+ +..+|+.-++|+-++..++.+.+..-.+++|.+++.+++.= .. ..
T Consensus 369 R~~v~dvl~Dv~~iigs---~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp-~Q-~~ 443 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGS---DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP-EQ-AP 443 (559)
T ss_pred HHHHHHHHHHHHHHhCc---HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc-cc-hh
Confidence 111112222332 34555555543 35689999999999999999887766778999998886532 22 23
Q ss_pred HHHHHHHHHHHHHHHhccc--cccchHHHHhcccCCCCccchhhHHHHHHHHH
Q 000201 1138 RRQVAGRALGELVRKLGER--VLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1188 (1866)
Q Consensus 1138 ~R~~A~~~L~~lv~~~~~~--~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li 1188 (1866)
.|..+...+|++.+..... .+..++..+..++.... ....+..++..+.
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~ 494 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRIC 494 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHH
Confidence 8999999999887765432 34444445555544332 2233334444443
No 201
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.44 E-value=23 Score=48.69 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhH-hhHHHHHHhhhccCcchhhhhHHHHHHHhhccc
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV-ALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 1825 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l-~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 1825 (1866)
..|..+++.|.+.+..+--.++-+|..+.-.+|..=.-.. ...+|.+.+.+..++..+-.-+-.|+..++..+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 3566777777788888877777777777766664321111 336888888888887777666666777776655
No 202
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=53 Score=43.20 Aligned_cols=339 Identities=15% Similarity=0.115 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhh
Q 000201 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL-LSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSR 1441 (1866)
Q Consensus 1363 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l-l~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~ 1441 (1866)
+..-.+++..+..+..+-+...+++++.+++..... +...++.....+...++.+....
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l-------------------- 540 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWL-------------------- 540 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHH--------------------
Confidence 445566777777777776666655544444433221 22234444444444444333211
Q ss_pred hhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC-
Q 000201 1442 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR- 1520 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~- 1520 (1866)
+ .-|.++++.+|.+.+++.++ +.-+++..++..+|+.+ +..+.||...+...+-.++...
T Consensus 541 --------~--------e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C-~~~L~py~d~~~a~~~e~l~~~~ 601 (982)
T KOG2022|consen 541 --------G--------EHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETC-PESLDPYADQFSAVCYEVLNKSN 601 (982)
T ss_pred --------h--------cCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhh-hhhCchHHHHHHHHHHHHhcccc
Confidence 1 12568889999999999754 44456777799999988 7899999999887777666432
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHhc----CC--CHHHHHHHHHHHHHHHhcc------------
Q 000201 1521 FPWQVKSAILSTLSIIIRKGG-IALKPFLPQLQTTFIKCLQ----DS--TRTVRSSAALALGKLSALS------------ 1581 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~-~~~~~~lp~L~~~l~~~l~----d~--~~~vR~~Aa~aLg~L~~~~------------ 1581 (1866)
.....+..++.++|-++.... .....|+-.++..++..++ .. +.+-+.+.+.-++.+..+.
T Consensus 602 ~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 602 AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 345678889999998887664 2233355555555444332 21 3444444444444442210
Q ss_pred --CC----------hhhHHHHHHHHhcc------CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHH
Q 000201 1582 --TR----------VDPLVGDLLSSLQV------SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH 1643 (1866)
Q Consensus 1582 --~~----------~~~~l~~L~~~l~~------~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~ 1643 (1866)
|- +-.+..+++..++. .+.++.+..+..+..-+...+..+.+++++.+..++........-.
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~ 761 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAV 761 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHH
Confidence 00 11122222222221 3456667666666655666666777899999999988854443322
Q ss_pred HHHHHHHHHHHHHhh---cC--hhHHHHHHHHHHhccC----CCCcchhhhHHHHHHHHHhhCCCcccC-CcchHH-HHH
Q 000201 1644 VRVSAASILGIMSQC---ME--DGQLADLLQELLNLAS----SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLS-ILD 1712 (1866)
Q Consensus 1644 vr~~aa~~l~~L~~~---~~--~~~~~~~l~~ll~~~~----~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~-~~~ 1712 (1866)
.-...+.|+-..... .| ...+...++..+.... .+..+....-...+..+++..|.-+.. ...+.. +..
T Consensus 762 tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~ 841 (982)
T KOG2022|consen 762 TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILI 841 (982)
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHH
Confidence 222222222221110 00 0113333333222111 233333344455788888888875542 223333 444
Q ss_pred HHHhhhcCCChhHHHHHHHHhHHHHhhh
Q 000201 1713 RLKSSLKDEKFPLREASTKALGRLLLHQ 1740 (1866)
Q Consensus 1713 ~l~~~~~~~~~~~r~~a~~alg~ll~~~ 1740 (1866)
.-...++++.+..-+++..-+..++.+.
T Consensus 842 ~a~~ll~~pE~~~i~aa~qF~t~~~~~~ 869 (982)
T KOG2022|consen 842 CAFILLNSPEPTTIRAASQFLTALATYA 869 (982)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhhc
Confidence 6677788887766666666665555544
No 203
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.88 E-value=19 Score=45.31 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHhhHHhHHH-HHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCC
Q 000201 671 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDT 748 (1866)
Q Consensus 671 ~~VR~~a~~al~~i~~~l~~~~v~~llp-~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~ 748 (1866)
..-|-.++.+++.++..++......++. .|..+|++.+--.|..+..++..++.......... .+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 4567788999999999998888777776 58899999999999999999999998765432111 234455555666643
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=91.82 E-value=28 Score=41.21 Aligned_cols=214 Identities=20% Similarity=0.176 Sum_probs=134.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHh-hhC-cchh-hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-cCchhc
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVK-GFG-ISSL-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPY 654 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~-~~g-~~~l-~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~-~~~~p~ 654 (1866)
.+...-...+|..-.++..-|...++ ... ...+ ....+...|-+.+...-+.-+-.-|+..+..+.+..| ..+...
T Consensus 15 ~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~d 94 (307)
T PF04118_consen 15 ALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQD 94 (307)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhh
Confidence 33333334556655555555555554 111 1111 1123455566666655555555568999999998887 334444
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh---HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~---v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
+.-..|.++..+......||-.-.+.+....-.+++.- .+.++..++.+|++++-.....+..++..+....+..
T Consensus 95 l~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~-- 172 (307)
T PF04118_consen 95 LPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK-- 172 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--
Confidence 55567777888888889999999998888777777721 2566667777888887777777788888887765544
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---------------chhHHhHHHHHHHhhCCCChhH-HHHHH
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---------------NPEIASLVPTLLMGLTDPNDHT-KYSLD 795 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---------------~~~i~~lv~~L~~~l~d~~~~v-r~al~ 795 (1866)
-++..++..+- ++|.+|..|..-+..-..... .++..-++..+...+.|++--| |.+++
T Consensus 173 ----~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LD 247 (307)
T PF04118_consen 173 ----YFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLD 247 (307)
T ss_pred ----HHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHH
Confidence 23333444333 468899988877765443322 1222346778888888887655 46788
Q ss_pred HHHh
Q 000201 796 ILLQ 799 (1866)
Q Consensus 796 ~L~~ 799 (1866)
.+..
T Consensus 248 lLl~ 251 (307)
T PF04118_consen 248 LLLS 251 (307)
T ss_pred HHHH
Confidence 7765
No 205
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.73 E-value=1.5 Score=42.94 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhc-hhhHhHHHHHHHHHHhh
Q 000201 906 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDG 982 (1866)
Q Consensus 906 ~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f~~~l~~il~~ll~~ 982 (1866)
..+...|..+..+++.+++ .+..+.....|+++..+++. .+++|..++.+|..+...++ +++.|++++++-.++..
T Consensus 26 ~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 4556688899999999999 77788888888888887753 66899999999999999887 57788888877777665
Q ss_pred c
Q 000201 983 L 983 (1866)
Q Consensus 983 l 983 (1866)
.
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
No 206
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.70 E-value=1.1 Score=42.41 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=66.7
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 1429 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l 1429 (1866)
.++..+..+.|+.+.+|..++..+..+++... ......+.++..++..+.|+|+-|--+|..+|+.++...+...++.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 34556666788889999999999999987655 33445688899999999999999999999999999999888777666
Q ss_pred HHH
Q 000201 1430 IKV 1432 (1866)
Q Consensus 1430 ~~~ 1432 (1866)
+..
T Consensus 83 ~~~ 85 (92)
T PF10363_consen 83 LDE 85 (92)
T ss_pred HHH
Confidence 543
No 207
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.53 E-value=8.6 Score=46.92 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=68.2
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHH----hhchhhHH
Q 000201 1123 LMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA----SAGKSQLL 1197 (1866)
Q Consensus 1123 l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~----~~~~~~l~ 1197 (1866)
+.+.+...+. +.++........+++.....++..+-+.++..+.++++++.+.+|..-+..+++.+. ........
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~ 102 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE 102 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 3333333333 578888999999999888888666778899999999999999999999999998876 22223344
Q ss_pred hhHhhHHHHHHHhhcCCcHH
Q 000201 1198 SFMDELIPTIRTALCDSILE 1217 (1866)
Q Consensus 1198 ~~l~~ll~~l~~~L~d~~~~ 1217 (1866)
++++.++..+.+....+.+.
T Consensus 103 ~~~~~L~~~~~~~~~~p~~~ 122 (339)
T PF12074_consen 103 PFLPKLLQSLKEASANPLQS 122 (339)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 55566666666666555443
No 208
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.43 E-value=4.9 Score=47.42 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=98.9
Q ss_pred CCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC---------hhhHHHHHHHhcc-------cCCCH
Q 000201 846 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK-------SDNSN 909 (1866)
Q Consensus 846 ~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~---------~~~l~~~L~~~L~-------~~~~~ 909 (1866)
+...+..+++-++|.++.++.|..+.+|..++.++..+...++... .+-+.+.+...+. .+++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 3356778899999999999999999999999999999999776543 2223333333332 12223
Q ss_pred HHHHHHHHHHHHHHHHhC---h-h---HHHHHHHH-HHHHhcc----CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 910 VERSGAAQGLSEVLAALG---T-V---YFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g---~-~---~l~~ll~~-l~~~l~~----~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
..-..+..++-.++.... . . .+.+++.. ++..... +.+.++...+..+..+...+|-....|++.++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333455566655554321 1 1 23344433 5555433 248899999999999999999999999999999
Q ss_pred HHHhhccCCC
Q 000201 978 AILDGLADEN 987 (1866)
Q Consensus 978 ~ll~~l~d~~ 987 (1866)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888764
No 209
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.31 E-value=3.9 Score=48.24 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=109.1
Q ss_pred HHHHHHh-hcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC------CCchHHHHHHHHHHhc-
Q 000201 1489 GLGELIE-VTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL------KPFLPQLQTTFIKCLQ- 1560 (1866)
Q Consensus 1489 ~L~~l~~-~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~------~~~lp~L~~~l~~~l~- 1560 (1866)
.+.-++. ..+...+..+..-++|+++.++.|. ...+|...+.+|..++.+++... ....+.+.+.+..++.
T Consensus 99 ~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~ 177 (282)
T PF10521_consen 99 VLSWIVLSQLDRPWISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYY 177 (282)
T ss_pred HHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhc
Confidence 3444444 5556678888899999999999985 88999999999999999876543 2234556667777776
Q ss_pred -------CCCHHHHHHHHHHHHHHHhc------cC---ChhhHHHH-HHHHhc-cC---ChhHHHHHHHHHHHHHHhcCc
Q 000201 1561 -------DSTRTVRSSAALALGKLSAL------ST---RVDPLVGD-LLSSLQ-VS---DAGIREAILTALKGVLKHAGK 1619 (1866)
Q Consensus 1561 -------d~~~~vR~~Aa~aLg~L~~~------~~---~~~~~l~~-L~~~l~-~~---~~~vr~~~l~aL~~vi~~~~~ 1619 (1866)
+.+..+-..|..|+-.|... .+ ..+.++.+ ++..+. .. ...++...++.+..++...|.
T Consensus 178 LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi 257 (282)
T PF10521_consen 178 LPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI 257 (282)
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc
Confidence 44567777888888887442 12 24445544 555543 23 388999999999999999988
Q ss_pred cccHHHHHHHHHHHHHhhcCC
Q 000201 1620 SVSSAVKIRVYSVLKDLVYHD 1640 (1866)
Q Consensus 1620 ~l~~~~~~~i~~~L~~~l~~~ 1640 (1866)
... .+.+.++..+.+.+.++
T Consensus 258 ~~~-~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 258 SSV-KHLQRIIPVLSQILENP 277 (282)
T ss_pred HHH-HHHHHHHHHHHHHhcCC
Confidence 666 78888888888776655
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=3.2 Score=54.35 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=104.9
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC---hhhhhh----hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 000201 1467 LLPIFLQGLISGSAELREQAALGLGELIEVTS---EQSLKE----FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1467 ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~---~~~l~~----~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~ 1539 (1866)
|+|..++.|.+...+.|....-..+.|...-+ .+-++. |..++..| +...+++-|..+.-.|..+++.
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~-----~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP-----SQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC-----cCCCCHHHHHHHHHHHHHHHcc
Confidence 68888888888888888877766666664331 111222 22222222 1335667888888888888876
Q ss_pred cCCCCCC-chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHh------ccCChhhHHHHHHHHhccCChhHHHHHHHHHH
Q 000201 1540 GGIALKP-FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSA------LSTRVDPLVGDLLSSLQVSDAGIREAILTALK 1611 (1866)
Q Consensus 1540 ~~~~~~~-~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~------~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~ 1611 (1866)
.+..-+. +-+.++...+..++|+ .+-+|.=.+.|||.|.. ..+.-+.-...|...+.++-++||.+++-||+
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 5433222 3367888899999995 78999999999999942 23445556677888888889999999999999
Q ss_pred HHHHhcCc
Q 000201 1612 GVLKHAGK 1619 (1866)
Q Consensus 1612 ~vi~~~~~ 1619 (1866)
..+.....
T Consensus 668 tfl~~~~d 675 (1387)
T KOG1517|consen 668 TFLSNGSD 675 (1387)
T ss_pred HHhccccc
Confidence 99987543
No 211
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.19 E-value=6.6 Score=48.40 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC-------CcHHHHHHHHHHHHHHH
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-------NSAKRREGALLAFECLC 644 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~-------~~~~~r~~al~al~~L~ 644 (1866)
..-+..++...++. .+...|..|.+.|.. .-|.. .++|++...+.+. .|-..-.-.+.....|.
T Consensus 205 lQlYy~~It~a~~g-~~~~~r~eAL~sL~T---DsGL~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTG-SDEPLRQEALQSLET---DSGLQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHhhcc---CccHH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 34455555555554 445678888877653 22322 3445444444321 22222223344444455
Q ss_pred HHhCcCchhcHHhHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHhhcHhh--H-HhHHHHHHhhcCC--CCh
Q 000201 645 EKLGRLFEPYVIQMLPLLLVAFS----------DQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLED--KAW 709 (1866)
Q Consensus 645 ~~l~~~~~p~v~~llp~ll~~~~----------D~~~~VR~~a~~al~~i~~~l~~~~--v-~~llp~L~~~L~~--~~w 709 (1866)
.+..-.++||+.+++|.++.|+- |....+|+-|+..+..++..++... + ..+...+.+.+.| ..|
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 55555689999999999998863 4567899999999999999887632 2 5677777777765 469
Q ss_pred hhHHHHHHHHHHHHhh
Q 000201 710 RTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~ 725 (1866)
...+|++..|..+...
T Consensus 356 st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 356 STHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhHHHHHHHhhhh
Confidence 9999999999988764
No 212
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.11 E-value=86 Score=44.08 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=84.3
Q ss_pred HhhhhHHHHHH-hcCCCHhHHHHHHHHHHHHHhh--cC--CCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 854 IGLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRG--MG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 854 ~~~ll~~L~~~-l~d~~~~vR~~a~~aL~~l~~~--~g--~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
.+.++..+..+ ..+..|.+|..+.+.+..++-. ++ +....++-..+...+. +.+..+|..++.+|+.+..+--.
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhcccc
Confidence 34455555533 3356899999999988887753 22 1223344444444443 44456899999999888765332
Q ss_pred hHHHHHHHHHHHHh--ccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 929 VYFEHILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 929 ~~l~~ll~~l~~~l--~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
.............. .+.+.....++...++.+.-.+|..+--+++..+-.+-....++ .-++.++-+++..+-.
T Consensus 1603 ~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrr 1678 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRR 1678 (1710)
T ss_pred ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHH
Confidence 21111111111111 12244556788899999999988765445555555444444444 5566666666555443
No 213
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.82 E-value=41 Score=39.84 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=129.1
Q ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHhhH----HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 657 QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 657 ~llp~ll~~~~D~-~~~VR~~a~~al~~i~~~l~~~~v----~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
.+-.-+-+|+.-. -..|-..|.+....|++.+++..+ ....|.++..+...+-++|-.-+.++....-..+..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 3444444454322 457999999999999999999875 45678888888888899999999998877766677888
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHH-HHHHHHHh--cccc----
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQ--TTFV---- 803 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr-~al~~L~~--~~~~---- 803 (1866)
..++.++..++..+.|+..++...+...+..+...+++..+ +.+--.++ ..| ..| .|+.-+.. ..+.
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii---~sp--~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII---TSP--SRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh---cCc--chhHHHHHHHHHhCCccccccc
Confidence 89999999999999999999999999999999988876532 33222222 223 344 34443332 0111
Q ss_pred -------ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 804 -------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 804 -------~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
...-.+.-..++..+..+++|.+.-|++.+.+.+-.-..
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 001123445678888899999999999998877766544
No 214
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.71 E-value=11 Score=49.89 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred CcchhhhHHHHHHHHHhhCCCcccC--CcchHHHHHHHH----hhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHH
Q 000201 1679 SWAARHGSVLVFATFLRHNPSAISM--SPLFLSILDRLK----SSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752 (1866)
Q Consensus 1679 ~~~~r~~~~~~L~~~l~~~p~~~~~--~~~~~~~~~~l~----~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~ 1752 (1866)
....+..+.+++..++...-..-.. ......+++++. .+....+...+...+.|+|.+-... ..
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i 479 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SI 479 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HH
Confidence 3345666778888777642111100 111234444444 4444556666788899998654321 23
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhcc
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQL 1824 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~ 1824 (1866)
..+.+++.+-...+..+|.+|+++++.++..+|..+++.+- .+|.. +..+..||.||- ..+++-
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~----~i~~n-~~e~~EvRiaA~---~~lm~t 543 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL----PIYLN-RAEPPEVRMAAV---LVLMET 543 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH----HHHcC-CCCChHHHHHHH---HHHHhc
Confidence 34444444445567899999999999999999887765433 23322 234566887654 444444
No 215
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=90.66 E-value=7.9 Score=48.58 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccchHH-HHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhc
Q 000201 1137 ERRQVAGRALGELVRKLGERVLPSIIP-ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1137 ~~R~~A~~~L~~lv~~~~~~~l~~llp-~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~ 1212 (1866)
..|..|..+||.++...+...+..+.. .+...|.++..-.|..++..+.+...........+..+.+.+.+...|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 468888889998888877666655554 5777888888888888888888876554322111112344444555555
No 216
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.04 E-value=1.6 Score=41.19 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=64.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 776 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv 776 (1866)
+...++.+.|+...+|-.++..|..+..... ......+.++..+...++|+++-|--+|.++|..++....+ .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHH
Confidence 4455666777888888888888888887655 23334578888899999999999999999999999976643 455
Q ss_pred HHHHHhhCCC
Q 000201 777 PTLLMGLTDP 786 (1866)
Q Consensus 777 ~~L~~~l~d~ 786 (1866)
|.|++...|+
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 6666555444
No 217
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.84 E-value=2.4 Score=41.53 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=63.1
Q ss_pred chHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh
Q 000201 615 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 615 ~ii~~L~~~i~~---~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
+++..+...+.+ +++...|..++.+++.+.+..++...++..++.-.|...+..+ .+|..+.++...+...+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455555555555 6677788889999999999655555555556666665555544 89999999999999999998
Q ss_pred hHHhHHHHHHh
Q 000201 692 GVKLVLPSLLK 702 (1866)
Q Consensus 692 ~v~~llp~L~~ 702 (1866)
.+..+++..+.
T Consensus 89 ~l~~ll~~~~~ 99 (107)
T PF08064_consen 89 DLGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 218
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.81 E-value=13 Score=49.90 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCC------------cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEP------------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF 892 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~------------~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~ 892 (1866)
.+..++..|.-.++.+....... .....|.+.+...+.......+...+..++++||.+..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence 35567777777777776532111 22334555566666666666777888899999998753
Q ss_pred hhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHH
Q 000201 893 PDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 959 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~ 959 (1866)
+..++.+...+.+. .+..+|..|+++|..+.........+.+++.+.+ ...++++|.+|+.++-.
T Consensus 520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN--TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHH
T ss_pred chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC--CCCChhHHHHHHHHHHh
Confidence 45666666665544 3456888888888755433322222333332222 13478899887765543
No 219
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=89.74 E-value=1.1e+02 Score=42.97 Aligned_cols=376 Identities=14% Similarity=0.055 Sum_probs=174.1
Q ss_pred hhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcc-hhhhhHHHHHHHHhhhhhhhhhhhcCCccccC
Q 000201 1378 KNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKE-VQPSYIKVIRDAISTSRDKERRKKKGGPILIP 1456 (1866)
Q Consensus 1378 ~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~-~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~ 1456 (1866)
+++.......+...++.++..+...++.|...+..+|-.++...-.. ..-..+.... .+. . ..
T Consensus 795 ~~~~~~~~~~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~-------~~~---~------~~ 858 (1364)
T KOG1823|consen 795 KSSDDSTVSQLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLL-------ARK---R------HS 858 (1364)
T ss_pred cCccHhHHHHHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-------HHH---h------hc
Confidence 34455566667777778888887788888888888877776532111 1000000000 000 0 00
Q ss_pred CcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000201 1457 GFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536 (1866)
Q Consensus 1457 g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L 1536 (1866)
+-...+.+.-+....++..++..++ ..+-+...+..-+-++-.|-.+..-...++.++..+
T Consensus 859 -----------------gs~~~~~el~q~~~k~~t~lI~~~~--s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl 919 (1364)
T KOG1823|consen 859 -----------------GSPSTNFELCQDSFKGFTALIAQVG--SVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKAL 919 (1364)
T ss_pred -----------------CCCcccHHHHHHHHHHHHHHHHHhc--ceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 0001134455666777777776653 233333444444455555543444444555555555
Q ss_pred HHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000201 1537 IRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615 (1866)
Q Consensus 1537 ~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~ 1615 (1866)
+.+ + -..|-+..+...+.+.+... ..+.|..+...+-......++..+.+..+++.+..+...-|+...
T Consensus 920 ~~r-~-i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~s~~~k~~~~~V~~l~~~~esg~esvr-------- 989 (1364)
T KOG1823|consen 920 VSR-K-IMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSKSKLEKQMEFMVDNLLYEVESGRESVR-------- 989 (1364)
T ss_pred Hhc-c-ccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhcchhhHHHHHHHHHhhhhhhcccchhc--------
Confidence 443 1 12334566677777665544 677888888776555435567778888888877654322222222
Q ss_pred hcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHh
Q 000201 1616 HAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLR 1695 (1866)
Q Consensus 1616 ~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~ 1695 (1866)
....-+.+.+....++...--+.++....|.++...+..+..-...+.+.=+.+.+..|........+...+.+...+..
T Consensus 990 ~~~all~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~ 1069 (1364)
T KOG1823|consen 990 FSPALLFEILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELFNLLERLLHEWVGVHKRHKRFILVGATGKAEE 1069 (1364)
T ss_pred ccHHHHHHHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 00000111111222222222344556667777777666553322222232223334456544443334434444444433
Q ss_pred hCCCcc------cCCcchHHHHHH-HHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHH
Q 000201 1696 HNPSAI------SMSPLFLSILDR-LKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSE 1768 (1866)
Q Consensus 1696 ~~p~~~------~~~~~~~~~~~~-l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 1768 (1866)
..+... ..+.++..++.. ........+ -......++..+...... + .-.....+...+...+..+..+
T Consensus 1070 ~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~---~~~~~~~lfs~lt~~t~~-i-kk~~f~ki~~~v~~~~l~~~~~ 1144 (1364)
T KOG1823|consen 1070 SIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETE---EVLFDKVLFSWLTLVTEN-I-KKGGFSKIWSRVVGLLLMPHSW 1144 (1364)
T ss_pred HHhHHHHHHHhhccceeeeecccccccHHHHHHH---HHhhHHHHHHHHHHHHHH-H-HhccHHHHHHHHHHHHhCchHH
Confidence 322111 011111111000 000000000 011122222222111100 0 0012345666666666778889
Q ss_pred HHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhc
Q 000201 1769 VRRRALSALKSVAKANPSAIMVHVALFGPALAECLK 1804 (1866)
Q Consensus 1769 vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~ 1804 (1866)
||..+.+..+.+....... .-.+..+.|.+.....
T Consensus 1145 v~~s~~~lf~~l~a~~~~~-e~~~~~i~~~ll~~L~ 1179 (1364)
T KOG1823|consen 1145 VRLSRAQLFGFLFAISDVS-ELRLRTIIPLLLAHLD 1179 (1364)
T ss_pred HHHHHHHHHHHHHhcccHH-HHHHHHhHHHHHHhCC
Confidence 9999888888776644322 1123355555555543
No 220
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.70 E-value=15 Score=44.87 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH-hc-cCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHH----hcCc
Q 000201 1547 FLPQLQTTFIKCLQDS-TRTVRSSAALALGKLS-AL-STRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK----HAGK 1619 (1866)
Q Consensus 1547 ~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~-~~-~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~----~~~~ 1619 (1866)
.-+.+...+...+..+ |+........+++.-. .+ ..-.++++..+.+++++..+.+|...+.++..++. ....
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 4456666677766664 9999999999998663 33 34456788899999998888899999999999987 3333
Q ss_pred cccHHHHHHHHHHHHHhhcCCCHHHH----HHHHHHHHHHHhhcChhHHHH----------------HHH-HHHhccCCC
Q 000201 1620 SVSSAVKIRVYSVLKDLVYHDDDHVR----VSAASILGIMSQCMEDGQLAD----------------LLQ-ELLNLASSP 1678 (1866)
Q Consensus 1620 ~l~~~~~~~i~~~L~~~l~~~~~~vr----~~aa~~l~~L~~~~~~~~~~~----------------~l~-~ll~~~~~~ 1678 (1866)
.+..+..+.+...+.+...++-.... ..+.-++. +... ..+.... ++. .+.....
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~-~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~-- 174 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSW-KLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA-- 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccc-cchhhhhhhhhhhhhccCCCcchhcCHHHHhccC--
Confidence 34456677777777776665532211 11111112 1000 0000000 111 1112211
Q ss_pred CcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCC--ChhHHHHHHHHhHHHHhhhh
Q 000201 1679 SWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDE--KFPLREASTKALGRLLLHQI 1741 (1866)
Q Consensus 1679 ~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~--~~~~r~~a~~alg~ll~~~~ 1741 (1866)
+.....+.+.++..++...+....... ...+-..++-.+.+. .+.+|+.|..++..+.....
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 222345566678788877766553322 334555566666666 78999999999999887654
No 221
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=89.66 E-value=3.6 Score=45.27 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=97.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 821 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 821 ~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
.++-+....-.....+++.+...++.. ..+++..++..+.++-.+++...|..+-.++|+.++.+|++.+-.++|.-+
T Consensus 8 ~L~~~y~~aw~~vl~v~s~lf~~lg~~--~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl 85 (198)
T PF08161_consen 8 LLSYRYQHAWPEVLNVLSALFEKLGER--SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNL 85 (198)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCc
Confidence 333333344455556666666655542 356777788888888888888899999999999999999886656666332
Q ss_pred HhcccCCCHHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHH---hcc---C--ChhHH---hHHHHHHHHhhhhh--ch
Q 000201 901 DALKSDNSNVERSGAAQGLSEVLAALGTVYF-EHILPDIIRN---CSH---Q--RASVR---DGYLTLFKYLPRSL--GV 966 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-~~ll~~l~~~---l~~---~--~~~vR---~~al~~l~~L~~~~--g~ 966 (1866)
+. .+.....|.-..--|.+-+....-.++ +.++|..... ..+ . ..+.| .-..+.|.-++..+ +.
T Consensus 86 ~~--~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~ 163 (198)
T PF08161_consen 86 DN--ADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPT 163 (198)
T ss_pred cC--CCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcc
Confidence 21 111111233323223222222122222 3444433221 111 1 11122 22345666666655 34
Q ss_pred hhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 967 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 967 ~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
++...++.+.+.+.+.+.+. +++|...+++++.+
T Consensus 164 D~~~~F~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 164 DLAESFPSFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred cHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 55445566666677777664 77888887777654
No 222
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.58 E-value=70 Score=40.64 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHhhhc-CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhh
Q 000201 1711 LDRLKSSLK-DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIM 1789 (1866)
Q Consensus 1711 ~~~l~~~~~-~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~ 1789 (1866)
.|.++..+. ++.|.+|.+|+.++|+++..... ..++.-.-+...+.|.+.+|||.|+..+.-+.-...--++
T Consensus 935 lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-------~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK 1007 (1128)
T COG5098 935 LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-------TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK 1007 (1128)
T ss_pred HHHHHHHHhhCCCcceeccceeeccccceehhh-------hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec
Confidence 344444443 67788888888888888776542 3345555566777788888888888888766654432233
Q ss_pred hhHhhHHHHHHhhhccCcchhhhhHHHHH
Q 000201 1790 VHVALFGPALAECLKDGSTPVRLAAERCA 1818 (1866)
Q Consensus 1790 ~~l~~l~p~l~~~~~~~~~~vk~aae~a~ 1818 (1866)
.+ +|-|..+..|++..++.-|+.-|
T Consensus 1008 Gq----lg~ma~~L~deda~Isdmar~ff 1032 (1128)
T COG5098 1008 GQ----LGKMALLLTDEDAEISDMARHFF 1032 (1128)
T ss_pred cc----hhhhHhhccCCcchHHHHHHHHH
Confidence 22 44555666666666655555333
No 223
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.42 E-value=4.7 Score=48.84 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC-----CC-cHHHHHHHHHHHHHHH
Q 000201 571 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-----RN-SAKRREGALLAFECLC 644 (1866)
Q Consensus 571 ~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~-----~~-~~~~r~~al~al~~L~ 644 (1866)
....++..+.+.+.. .+...|..|...|. ...|.. .++|++...+.+ -+ +...-...+.....|.
T Consensus 175 Elq~yf~~It~a~~~-~~~~~r~~aL~sL~---tD~gl~-----~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 175 ELQLYFEEITEALVG-SNEEKRREALQSLR---TDPGLQ-----QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHhc---cCCCch-----hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 344555555665554 33456666555543 333333 345554444322 11 3333444555566666
Q ss_pred HHhCcCchhcHHhHHHHHHHHc----------CCCCHHHHHHHHHHHHHHHHhhcHh--hH-HhHHHHHHhhcCCC--Ch
Q 000201 645 EKLGRLFEPYVIQMLPLLLVAF----------SDQVVAVREAAECAARAMMSQLSAQ--GV-KLVLPSLLKGLEDK--AW 709 (1866)
Q Consensus 645 ~~l~~~~~p~v~~llp~ll~~~----------~D~~~~VR~~a~~al~~i~~~l~~~--~v-~~llp~L~~~L~~~--~w 709 (1866)
....-.++||+.+++|.++.|+ .+....+|+-|+..+..++..++.. .+ ..+...+.+.+.++ ..
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 6666678999999999999887 2345689999999999999988764 23 66777777777654 35
Q ss_pred hhHHHHHHHHHHHH
Q 000201 710 RTKQSSVQLLGAMA 723 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~ 723 (1866)
.+.+||+..|..+.
T Consensus 326 ~~~YGAi~GL~~lG 339 (343)
T cd08050 326 TTHYGAIVGLSALG 339 (343)
T ss_pred chhhHHHHHHHHhC
Confidence 66999999888775
No 224
>PF05536 Neurochondrin: Neurochondrin
Probab=89.16 E-value=83 Score=40.89 Aligned_cols=188 Identities=11% Similarity=0.058 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhHhhhc---cchhcHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC
Q 000201 1325 MDVQSLAKEAAETVTLV---IDEEGVESLVSELLKGVGDNQA-SIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS 1400 (1866)
Q Consensus 1325 ~~vr~~a~~~l~~l~~~---~~~~~~~~ll~~L~~~l~~~~~-~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~ 1400 (1866)
...+..+...+..++.. ...+.+-.-+|.|++.+...+. .+-.-++.++..+.......-.-.-...++.|+..+.
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 34455555555555441 1123456667777777765544 6777788888888743322211111234555555554
Q ss_pred CCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCH
Q 000201 1401 DSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSA 1480 (1866)
Q Consensus 1401 d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~ 1480 (1866)
+ .+...+.|...|..++.....+.++..- +.+..+++.+...+.....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~-------------------------------~~l~~il~~La~~fs~~~~ 198 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDS-------------------------------QLLHSILPSLARDFSSFHG 198 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhH-------------------------------HHHHHHHHHHHHHHHhhcc
Confidence 4 4556677777777776655433322111 1222333333333333344
Q ss_pred HHHHHHHHHHHHHHhhcCh-----hhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 000201 1481 ELREQAALGLGELIEVTSE-----QSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIAL 1544 (1866)
Q Consensus 1481 ~~r~~a~~~L~~l~~~~~~-----~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~ 1544 (1866)
..|-..+..++.+....+. ..-..+...+...+..+++.+..+.-|..++...+.++...|..+
T Consensus 199 ~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w 267 (543)
T PF05536_consen 199 EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW 267 (543)
T ss_pred chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence 5566777777777766521 112335566777778888888888999999999999999887653
No 225
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=6.4 Score=46.22 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=77.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCch
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFL 1548 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~l 1548 (1866)
+.++..+.++++++|..|+..||..+..-+...-.-.=......|+..+....+..+|..||.+++.+++..+.....|+
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34444788999999999999999999876432211111224566778887656778999999999999997665444443
Q ss_pred H-HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 000201 1549 P-QLQTTFIKCLQDS--TRTVRSSAALALGKLSA 1579 (1866)
Q Consensus 1549 p-~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L~~ 1579 (1866)
+ .=...+..+++++ +...+..+...++.+..
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 2 1144566777774 66788888888888854
No 226
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.00 E-value=10 Score=46.91 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=97.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhcCCCCC
Q 000201 1469 PIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRKGGIALK 1545 (1866)
Q Consensus 1469 p~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~al~~L~~L~~~~~~~~~ 1545 (1866)
.-+.+.++.+++..|..|..+|.. ..+-..+-||+..++ .....-. .+-..-...+.....|+..-..++.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fI---ae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQQLLPYFVTFI---AEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHHHHHHHHHHHH---hhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 334455666788888888777664 222233444433332 2111110 1223344455555566666567789
Q ss_pred CchHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhc-cCC---h-hhHHHHHHHHhccC--ChhHHHHHHH
Q 000201 1546 PFLPQLQTTFIKCLQ----------DSTRTVRSSAALALGKLSAL-STR---V-DPLVGDLLSSLQVS--DAGIREAILT 1608 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~----------d~~~~vR~~Aa~aLg~L~~~-~~~---~-~~~l~~L~~~l~~~--~~~vr~~~l~ 1608 (1866)
||+.+|+|.++.|+- |.+..+|.-|+..++.++.- ... + ..++..+.+.+.+. .....+.++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 999999999998862 33678999999999988542 111 1 22344455555543 4677899998
Q ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHhhcCC
Q 000201 1609 ALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD 1640 (1866)
Q Consensus 1609 aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~ 1640 (1866)
.|.++....-..+.-+.+...+..+...+...
T Consensus 364 gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 364 GLSELGHEVIRTVILPNLKEYNERLQSVLDVE 395 (576)
T ss_pred HHHHhhhhhhhheeccchHHHHHHhhhhcccc
Confidence 88887765443333344555555555544443
No 227
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=63 Score=39.16 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=55.0
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh--hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc--c
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~--~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~--~ 769 (1866)
+.++.-+++.|+-++...-...+.+|..+.--.. ..+.. ..++..+.++..-.|++.|++...-+-.+.-.-+ +
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~--~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ--NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh--ccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 4455555666655554444444444443332211 12222 3778888888888999999999888877764332 2
Q ss_pred hhH-HhHHHHHHHhhCCCC
Q 000201 770 PEI-ASLVPTLLMGLTDPN 787 (1866)
Q Consensus 770 ~~i-~~lv~~L~~~l~d~~ 787 (1866)
.-+ ..++|.+...+.+.+
T Consensus 381 KMv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HHhhccchHHHHHHhCCcc
Confidence 223 467888877776654
No 228
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=88.72 E-value=86 Score=40.52 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=73.3
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcChhh--------H--HHhHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHHHhcc
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTPKT--------L--KEIMPVLMNTLIS--SLASSSSERRQVAGRALGELVRKLGE 1155 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p~~--------l--~~~l~~l~~~L~~--~l~~~~~~~R~~A~~~L~~lv~~~~~ 1155 (1866)
+.....+|..-+.|+..+-.+.+..+.. . ...+...+..+.. ..+++++.+...-...+.+-..-...
T Consensus 447 ~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~ 526 (980)
T KOG2021|consen 447 MNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST 526 (980)
T ss_pred hcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 3456778888899999888887654321 1 1122233333332 12344555554444444432222221
Q ss_pred --ccccchHHHHh--cccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhh
Q 000201 1156 --RVLPSIIPILS--RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1211 (1866)
Q Consensus 1156 --~~l~~llp~L~--~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1211 (1866)
...|.++..+. .++.+.+..||..+...+...++... ..+-+|.+.++..+...|
T Consensus 527 esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 527 ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLVPFIEEILNKIQDLL 585 (980)
T ss_pred chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 23455555543 36777889999999988888877654 456678888888887776
No 229
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=88.47 E-value=3.7 Score=40.03 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=62.1
Q ss_pred HHHHHHHhcccC---CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccC--ChhHHhHHHHHHHHhhhhhc-hhh
Q 000201 895 LVSWLLDALKSD---NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG-VQF 968 (1866)
Q Consensus 895 l~~~L~~~L~~~---~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~L~~~~g-~~f 968 (1866)
++..+-+.+.+. .+...|..+..+++.+++..| .+.....|++...+++. .+++|..++.+|..+...+. +++
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHH
Confidence 344444444332 355678889999999998655 56777778777777653 77899999999999998886 466
Q ss_pred HhHHHHHHHHHHhh
Q 000201 969 QNYLQQVLPAILDG 982 (1866)
Q Consensus 969 ~~~l~~il~~ll~~ 982 (1866)
.|.+++++-.+++.
T Consensus 91 ~~ll~~~~~~i~~~ 104 (107)
T smart00802 91 GPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777776666554
No 230
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.96 E-value=27 Score=43.62 Aligned_cols=232 Identities=17% Similarity=0.200 Sum_probs=125.4
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHhhcC--h-
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDH-VRVSAASILGIMSQCME--D- 1661 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~-vr~~aa~~l~~L~~~~~--~- 1661 (1866)
.++..|+..++++|+.-|..+...+..+..+.... -.-.+..+...+.+.+.+.+.- -.....+++|.+..... -
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 56677777777777777777777777666654332 1234455555555544433211 12233455555554322 1
Q ss_pred hHHHHHHHH-HHhccCCCCcch-hhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhh
Q 000201 1662 GQLADLLQE-LLNLASSPSWAA-RHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1662 ~~~~~~l~~-ll~~~~~~~~~~-r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
++...++.. ++.......... ......++..++...|. +...++..+.++.=-.++.---.-+.=++.++..
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~------l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS------LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG------GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHh
Confidence 223334433 444443333322 12234456666666553 4556667777665444443333444445555554
Q ss_pred hhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--HHhhCcchhhhhHhhHHHHHHhhhcc-CcchhhhhHHH
Q 000201 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKS--VAKANPSAIMVHVALFGPALAECLKD-GSTPVRLAAER 1816 (1866)
Q Consensus 1740 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~--~a~~~~~~~~~~l~~l~p~l~~~~~~-~~~~vk~aae~ 1816 (1866)
.... +..+...+++..+..++++++..|-..|+...+. +...-.+.....++.+.|+|++..+. =|..||..|.+
T Consensus 286 ~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 286 LPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred cCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4321 1234556788888899999999998888865441 11110011122356667777765554 38899999999
Q ss_pred HHHHhhcccc
Q 000201 1817 CAVHAFQLTR 1826 (1866)
Q Consensus 1817 a~~~l~~~~~ 1826 (1866)
++-.+.++-.
T Consensus 364 vl~~l~~~d~ 373 (409)
T PF01603_consen 364 VLKILMEMDP 373 (409)
T ss_dssp HHHHHHTTSH
T ss_pred HHHHHHHhCH
Confidence 9999988743
No 231
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.88 E-value=11 Score=46.91 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhcCCCCCCchHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 1555 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~--~L~~~~~~~~~~~lp~L~~~l 1555 (1866)
+++.-...-..-+..++...++..+......++.-+.+.+... +.+|-..|+..+. .++..+. .+-..+.|.+
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~----~~~~~i~p~i 341 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLIS----QNSRVILPII 341 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHH----CTHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHH----hChHHHHHHH
Confidence 3444444556778888888877888888888887788887763 7778777776654 2233222 2334455555
Q ss_pred HHHhcC----C-CHHHHHHHHHHHHHHHhccC
Q 000201 1556 IKCLQD----S-TRTVRSSAALALGKLSALST 1582 (1866)
Q Consensus 1556 ~~~l~d----~-~~~vR~~Aa~aLg~L~~~~~ 1582 (1866)
...+.. . +..||..|..++..+..+.+
T Consensus 342 ~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~ 373 (409)
T PF01603_consen 342 FPALYRNSKNHWNQTVRNLAQNVLKILMEMDP 373 (409)
T ss_dssp HHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCH
Confidence 555433 2 78999999999998876544
No 232
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=37 Score=39.09 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=60.3
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+++++.+.+|.||.+|+..+-.+... +-. +-...++.+.+.+.++.. .+.+..++++...........++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999888777654 211 114567777777777655 44444455442221111122233344
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
..+...+.+..+..-...|..+.|+.+
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 455555566655555666777777765
No 233
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.66 E-value=5.3 Score=47.55 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=91.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhcccc---ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhh
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1202 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~---l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ 1202 (1866)
-++..+++.+..+|..|...+.++....+... +..+++.+.....|.+..+|......+-.++....++.+.++..-
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 34556788999999999999999987744432 344555566667788999999999998887777777778889999
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1203 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1203 ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
+++.+..++....+++|..+...+..+....++....
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 9999999999999999999999999888877765443
No 234
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=86.65 E-value=1.1e+02 Score=39.26 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc-----
Q 000201 630 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----- 704 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L----- 704 (1866)
...-+.++..|..+.. .|..-...+..++..|....+-. ...+.++.++..+++.-.++. .+..+...|
T Consensus 191 ~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~---~i~~L~~iL~~~~~ 264 (464)
T PF11864_consen 191 EDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS---AIRTLCDILRSPDP 264 (464)
T ss_pred HHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH---HHHHHHHHHcccCc
Confidence 3334556666666654 22222334445555555443322 777888998888886443332 233333333
Q ss_pred -CCCChhhHHHHHHHHHHHHhhChhhH--Hhhhcc--hhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 705 -EDKAWRTKQSSVQLLGAMAYCAPQQL--SQCLPK--IVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 705 -~~~~w~~r~~a~~~L~~l~~~~~~~~--~~~l~~--iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
..++.++-.||+..++.+.-+.+++- .-.+.. ++|.+...++-.++.|-......+..+.
T Consensus 265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 265 QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 12456777899999998887764331 222334 8888888888777776666665555554
No 235
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=1.3 Score=47.15 Aligned_cols=89 Identities=26% Similarity=0.350 Sum_probs=74.5
Q ss_pred cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hcC
Q 000201 1465 QPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIR---KGG 1541 (1866)
Q Consensus 1465 ~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~---~~~ 1541 (1866)
...+|.|.+|+...+-.-|-.|-.++.++.... ++.+-|.+++++.||-+.+..+ +.++....|.+|..+.. .+|
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~-g~kilpVLPqLI~plK~al~tr-d~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAG-GEKILPVLPQLILPLKAALVTR-DDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc-ccccccccHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhccccc
Confidence 457999999998777667778888899998877 5788899999999999999875 78899999999887766 457
Q ss_pred CCCCCchHHHHHHH
Q 000201 1542 IALKPFLPQLQTTF 1555 (1866)
Q Consensus 1542 ~~~~~~lp~L~~~l 1555 (1866)
..+.||.-|+++.+
T Consensus 191 ~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 191 AALVPFYRQLLPVL 204 (262)
T ss_pred hhhhhHHHHhhhhh
Confidence 78899999998865
No 236
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=86.33 E-value=84 Score=37.83 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcc--cCCcchHHHHHHHHh-hhcCCChhHHHHHHHHhHHHHhh
Q 000201 1667 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAI--SMSPLFLSILDRLKS-SLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1667 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~--~~~~~~~~~~~~l~~-~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
+++.++.|+.+.+-......+++++.+.+....-+ ....+...+++.+.+ .-.+++....-++..|+..+..-
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 66777788887776656666777777766543222 233455666666655 55566777777778888776543
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.94 E-value=66 Score=36.74 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=103.9
Q ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 659 LPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 659 lp~ll~-~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
+|.++. .-+..++.+......++..++..-. .....++..+....+.+.-..+.-+..++..+....+..+ ..+..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~ 79 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPL 79 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence 344443 4455677777777777777765433 3345555555555555555556666666666665544332 111111
Q ss_pred hHH-Hhh---hc--cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCChhHH-HHHHHHHhccccccCC-c
Q 000201 738 VPK-LTE---VL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFVNTVD-A 808 (1866)
Q Consensus 738 v~~-l~~---~L--~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~~~vr-~al~~L~~~~~~~~~~-~ 808 (1866)
+.. ..+ .. .+...++..+...++..++....+ ...++++.+...+ .+.++.++ .+++.+...--.+.++ .
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence 111 111 11 233345556666788888876655 5577888888888 44444444 3555444311000011 1
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 869 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~ 869 (1866)
+.+..+.|.+ -.+..+.+-+..+..+..+...--+.+....+...++..+-+.....+
T Consensus 159 s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 159 SAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 2233333322 223445555555555554444222334444556667777777766555
No 238
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.93 E-value=31 Score=42.30 Aligned_cols=183 Identities=15% Similarity=0.132 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-hhH-HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhh
Q 000201 1640 DDDHVRVSAASILGIMSQCME-DGQ-LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS 1717 (1866)
Q Consensus 1640 ~~~~vr~~aa~~l~~L~~~~~-~~~-~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~ 1717 (1866)
..+..|..|-+++..+..... .+. -..+++.+++-....+...|..++.++..+.-..|+-+...+....+...+.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~-- 157 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALI-- 157 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHH--
Confidence 356678888888888876622 112 1234555555444455556777788899998888887655444444444443
Q ss_pred hcCCChhHHHHHHHHhHHHHhhhhhcC-CCChhhHHHHHHHHHhh----cCCCCH-HHHHHHHHHHHHHHhhCcchhh--
Q 000201 1718 LKDEKFPLREASTKALGRLLLHQIQSG-PANTTVVVDILASVVSA----LHDDSS-EVRRRALSALKSVAKANPSAIM-- 1789 (1866)
Q Consensus 1718 ~~~~~~~~r~~a~~alg~ll~~~~~~~-~~~~~~~~~~l~~l~~~----l~~~~~-~vR~~a~~~l~~~a~~~~~~~~-- 1789 (1866)
+....+....+.++=+++.+..... .-..-.+..++.++... ..++.. +.-+.+..++.++-+.-++.+.
T Consensus 158 --d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 158 --DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred --hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 4333455555555555555433211 00112445566666655 222222 4566677888888887766541
Q ss_pred -hhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhccccc
Q 000201 1790 -VHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 1827 (1866)
Q Consensus 1790 -~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~ 1827 (1866)
+.. .-+..+....+.++..+|.+....+..+|++...
T Consensus 236 ~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 236 MNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred cCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 111 3467788888889999999999999999999865
No 239
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=84.75 E-value=1e+02 Score=37.26 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=54.1
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc-----cCCChHHHHHHHHHHHHHHhhcc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-----TDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L-----~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
+.++..+...+.+.+-+....+..++|++++....-+.-.-.+++..++.++ -|.+.+++.+++.||..++--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4477778888888888999999999999998754322111125555555554 35678889999999999875444
Q ss_pred c
Q 000201 769 N 769 (1866)
Q Consensus 769 ~ 769 (1866)
|
T Consensus 394 n 394 (604)
T KOG4500|consen 394 N 394 (604)
T ss_pred c
Confidence 4
No 240
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.60 E-value=33 Score=48.17 Aligned_cols=93 Identities=24% Similarity=0.245 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHH----HHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhcc
Q 000201 909 NVERSGAAQGLSEVLAALGTVYFEHILPDI----IRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 984 (1866)
Q Consensus 909 ~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l----~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~ 984 (1866)
...+..+.+.+++++.....+....++|.. .+...+.+..||......+..+...++....||+..++|+.+-+..
T Consensus 55 ~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~ 134 (1312)
T KOG0803|consen 55 ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGGQF 134 (1312)
T ss_pred hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhheec
Confidence 346778888888888877766555544333 2345678999999999999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHH
Q 000201 985 DENESVRDAALGAGHVL 1001 (1866)
Q Consensus 985 d~~~~VR~~a~~al~~i 1001 (1866)
|.+..|-.+|..+....
T Consensus 135 d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 135 DLDYPVSEAAKASFKDG 151 (1312)
T ss_pred ccchHHHHHHHHHHHhh
Confidence 88877777766665543
No 241
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.51 E-value=1.4 Score=34.44 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.2
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
..+|.|+.++.+.+++|+..|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999886
No 242
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=15 Score=43.93 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=96.3
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhh
Q 000201 1350 LVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSY 1429 (1866)
Q Consensus 1350 ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l 1429 (1866)
-+..|+..+++-+..+|..|.+.+..+....+.....+...+++.+..++.|.+..||...+..+..++-...++.+.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s-- 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS-- 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc--
Confidence 455667778888999999999999999888777777788899999999999999999999988887765433222111
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhh
Q 000201 1430 IKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPI 1509 (1866)
Q Consensus 1430 ~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i 1509 (1866)
..+.-++|.+.-++....+++|..++..+.-++..++ +.+..+...+
T Consensus 137 --------------------------------p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~-p~~~~~~~~i 183 (393)
T KOG2149|consen 137 --------------------------------PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP-DTFSRYASKI 183 (393)
T ss_pred --------------------------------chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC-hHHHHHHHHH
Confidence 1222345555566667789999999999999998884 3444444445
Q ss_pred hHHHHHHh
Q 000201 1510 TGPLIRII 1517 (1866)
Q Consensus 1510 ~~~Li~~l 1517 (1866)
.+-....+
T Consensus 184 l~n~~d~i 191 (393)
T KOG2149|consen 184 LENFKDVI 191 (393)
T ss_pred HHHHHHHH
Confidence 44444443
No 243
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.39 E-value=1e+02 Score=37.07 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=37.3
Q ss_pred CchhHHHHHHHHHHHHHhhccchh---hhhH----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1361 NQASIRRSSAYLIGYFYKNSKLYL---VDEA----PNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1361 ~~~~vR~~a~~~l~~l~~~~~~~~---~~~~----~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
.+..+.+..+..++.++...+... ..+. +.....++.+++.+|..+...|...|+.++...+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 345666777777777665443111 1111 12556677788888999999999999999876554
No 244
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=84.32 E-value=7.3 Score=37.98 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=60.7
Q ss_pred chHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh
Q 000201 615 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 691 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~---~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~ 691 (1866)
+++..+.+.+.+.+ +...|..++.+++.+.+..|.....+..++.-.|...+. .++.|..|.++...+...+.+.
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHH
Confidence 34555555554433 666788899999999997765555555566556665665 5569999999999999999988
Q ss_pred hHHhHHHHHH
Q 000201 692 GVKLVLPSLL 701 (1866)
Q Consensus 692 ~v~~llp~L~ 701 (1866)
.+..++...+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T smart00802 89 ELGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766665444
No 245
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=29 Score=48.76 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcccc----ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhh
Q 000201 1120 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1195 (1866)
Q Consensus 1120 l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~----l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~ 1195 (1866)
+..-+..+++.+...++.+|.-|...|++++.....+. +|.....+.+...|.+..+|...-..+..++..+. ..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk-k~ 117 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK-KK 117 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HH
Confidence 44446667777888999999999999999998765443 44444455566778899999999999998887775 46
Q ss_pred HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 000201 1196 LLSFMDELIPTIRTALCDSILEVRESAGLAFST 1228 (1866)
Q Consensus 1196 l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~ 1228 (1866)
+.+|+..+++...-..+|.+..|-.+|...+..
T Consensus 118 lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKD 150 (1312)
T ss_pred hhHHHHhhhhhhhheecccchHHHHHHHHHHHh
Confidence 789999999999888889988888777665543
No 246
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=82.81 E-value=7 Score=40.95 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh----------------hHHhhhc
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ----------------QLSQCLP 735 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~----------------~~~~~l~ 735 (1866)
.||...+.++..++...-+..++.+++.+++.+.+ +.......+.+|..+.+...+ .+..+.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 46677777777777766666667777777777766 355555566666555543211 1334456
Q ss_pred chhHHHhhhccCCC----hHHHHHHHHHHHHHHhhccchhH--HhHHHHHHHhhCCCC
Q 000201 736 KIVPKLTEVLTDTH----PKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGLTDPN 787 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~----~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~L~~~l~d~~ 787 (1866)
.++..+.++++... .++...+.++++.+..++.-..+ ..+++.+.+.+.+|+
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~ 139 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHH
Confidence 67777777666443 78888899999988886654443 357888888876654
No 247
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=82.44 E-value=1.7e+02 Score=38.47 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHH-------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc--cccchHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMP-------VLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPI 1164 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~-------~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~--~l~~llp~ 1164 (1866)
+..+-++++.+|..+....+ ....++. ..++.++..+...+..+-.+++.+|..+....... +-.+.+|-
T Consensus 532 n~~TlEasaGaLQNltA~~~-~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~ 610 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAGLW-TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPD 610 (717)
T ss_pred chHHHHHhhhhHhhhhccCC-cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHH
Confidence 34455666666666654322 1122222 22456667778788888888888888776543221 22345555
Q ss_pred HhcccCCC------CccchhhHHHHHHHHHHhhch--hhHH--hhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1165 LSRGLKDP------SASRRQGVCIGLSEVMASAGK--SQLL--SFMDELIPTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1165 L~~~L~d~------~~~vr~~a~~~L~~li~~~~~--~~l~--~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
|...|.+. ++++-..+|..|.+++...-. .++. .-++.++-+... ..++.+-++|...+..|
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s---~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS---QHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc---cCCHHHHHHHHHHHHHH
Confidence 55555433 345677888899888743211 1110 112333322222 44556666666666555
No 248
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.91 E-value=25 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHH
Q 000201 714 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 778 (1866)
Q Consensus 714 ~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~ 778 (1866)
..+.+++.+....+..-...+.+++..+.++-++.+...|..+-.+++...+.++...+-.++|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPL 83 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPL 83 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCC
Confidence 34556666666655555556667777788888888888999999999999988886655555553
No 249
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=1.3e+02 Score=35.23 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhh----hcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK----KYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~----~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
++.++.-+..+++-+.|..+-+++..+-.--|.+..+ ..+..+.+..+. +..+++..-+.++.++..|+-..++.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 3445555555455567766667776666555655443 223334444332 34445555555555555554332211
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
-.-. +-.-++++...-|+..+. .-.+++.+|+.+.+++.....+-
T Consensus 365 sa~~------------------ie~G~a~~avqAmkahP~-----------------~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 365 SAKA------------------IEAGAADLAVQAMKAHPV-----------------AAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred HHHH------------------HhcchHHHHHHHHHhCcH-----------------HHHHHHHHHHHHHHHHHhhhhcc
Confidence 0000 000112222222222221 23566777888887776654443
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
...+..=+..++..-...|+.++.+|-.+|..++-..
T Consensus 410 ~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 410 TILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred chHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 3334444556666667788999999999999888543
No 250
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=79.85 E-value=1.5e+02 Score=35.83 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=97.8
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc-CCCC----------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEEN----------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 924 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~-g~~~----------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~ 924 (1866)
.++..|...+..-..+.|+.+...++.+...- |... .++++..|+....+.+. +-..|.+.+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di-------al~~g~mlR 148 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI-------ALNCGDMLR 148 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT-------HHHHHHHHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc-------cchHHHHHH
Confidence 46677777777778899999999999888753 3321 13455555554443221 222233333
Q ss_pred HhChh-HH------HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHH
Q 000201 925 ALGTV-YF------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGA 997 (1866)
Q Consensus 925 ~~g~~-~l------~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~a 997 (1866)
.+-.. .+ .+.+-.+.+..+.++.++-..++..|..+-..-..-...|+
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl------------------------- 203 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFL------------------------- 203 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHH-------------------------
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHH-------------------------
Confidence 33211 11 11222233444444444444444433332221111000111
Q ss_pred HHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 998 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 998 l~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
....+.+.......+..+|+-.|+.|++++|+++-.-+. ...+...++.
T Consensus 204 ---------~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n---------------------~~vm~~yi~~- 252 (335)
T PF08569_consen 204 ---------SNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN---------------------FNVMTRYISS- 252 (335)
T ss_dssp ---------HHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG---------------------HHHHHHHTT--
T ss_pred ---------HHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH---------------------HHHHHHHHCC-
Confidence 011122333445567778999999999999999743110 0111222221
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcC
Q 000201 1078 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1112 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~ 1112 (1866)
.+.+..++..+.|.+..++-.|.++.+-++.|.
T Consensus 253 --~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 253 --PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp --HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred --HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 234555556689999999999999999999863
No 251
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=79.68 E-value=33 Score=41.25 Aligned_cols=137 Identities=14% Similarity=0.216 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHhcccC---CCHHHHH-HHHHHHHHHHHHhChh---HH----HHHHHH
Q 000201 871 EVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSD---NSNVERS-GAAQGLSEVLAALGTV---YF----EHILPD 937 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~--~~~~l~~~L~~~L~~~---~~~~~R~-~a~~~L~~l~~~~g~~---~l----~~ll~~ 937 (1866)
.+|+...+.+...++...+. ....++|.+++.+-.+ ..+..|. .+...++.++..+|.. .+ +.+...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46667777777777765532 2334555555432211 1111232 4556667777777763 22 333333
Q ss_pred HHHHhcc---CChhHHhHHHHHHHHhhhhhchhhHh----HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc
Q 000201 938 IIRNCSH---QRASVRDGYLTLFKYLPRSLGVQFQN----YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1007 (1866)
Q Consensus 938 l~~~l~~---~~~~vR~~al~~l~~L~~~~g~~f~~----~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~ 1007 (1866)
.+..... .-|+.|...+.++..+...+...+.. .+..++..+.-++++++.+|.+.+++++..+++++..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3444443 36899999999999999887655432 3567788888899999999999999999998887644
No 252
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.67 E-value=16 Score=36.43 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhc---c--C------C
Q 000201 918 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL---A--D------E 986 (1866)
Q Consensus 918 ~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l---~--d------~ 986 (1866)
.|+++... ....+.+++..+.+.+++.+++||--++.++.+++..-+..|...+..-...+-.+. . | .
T Consensus 24 Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~ 102 (122)
T cd03572 24 EIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSL 102 (122)
T ss_pred HHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcch
Confidence 34443333 234577888899999999999999999999999999988888776655433333221 1 1 2
Q ss_pred ChHHHHHHHHHHHHH
Q 000201 987 NESVRDAALGAGHVL 1001 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i 1001 (1866)
...||..|-+++..+
T Consensus 103 ~~~VR~~A~El~~~i 117 (122)
T cd03572 103 NEKVREEAQELIKAI 117 (122)
T ss_pred hHHHHHHHHHHHHHH
Confidence 334666665555544
No 253
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.33 E-value=69 Score=38.54 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh----hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ----CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 769 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~----~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-- 769 (1866)
.+..++..++.++|.++..|+..|..++...+..... .++.++..+...++.++..++..|+++|..+...-..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 5566777888899999999999999999876655433 3444444444444445667888999999988742211
Q ss_pred hhH-HhHHHHHHHhh-----CCCChhHHH---HHHHHHhccccccCCc-chhhhHHHHHHHhhcCC-CHHHHHHHHHHHH
Q 000201 770 PEI-ASLVPTLLMGL-----TDPNDHTKY---SLDILLQTTFVNTVDA-PSLALLVPIVHRGLRER-SAETKKKAAQIVG 838 (1866)
Q Consensus 770 ~~i-~~lv~~L~~~l-----~d~~~~vr~---al~~L~~~~~~~~~~~-~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~ 838 (1866)
..+ ...++.+.+.+ .+.....+- ++-.+--.+|...... -.-..++|.+...+++. ..++-+-+..++-
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 44555665555 222223332 2222222345332111 01122777777776553 4567777777888
Q ss_pred HHhhh
Q 000201 839 NMCSL 843 (1866)
Q Consensus 839 ~l~~~ 843 (1866)
|++..
T Consensus 266 Nl~~~ 270 (312)
T PF03224_consen 266 NLLSK 270 (312)
T ss_dssp HTTSS
T ss_pred HHHhc
Confidence 88763
No 254
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.81 E-value=1.7e+02 Score=35.96 Aligned_cols=216 Identities=19% Similarity=0.184 Sum_probs=124.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcc--------CChhhHHHHHHHHhcc--CChhHHHHHHHHHHHHHHh--cCccccHHH
Q 000201 1558 CLQDSTRTVRSSAALALGKLSALS--------TRVDPLVGDLLSSLQV--SDAGIREAILTALKGVLKH--AGKSVSSAV 1625 (1866)
Q Consensus 1558 ~l~d~~~~vR~~Aa~aLg~L~~~~--------~~~~~~l~~L~~~l~~--~~~~vr~~~l~aL~~vi~~--~~~~l~~~~ 1625 (1866)
.+++ +..||.++.+.+-.++.-. -+++-++ +..+.. ....-|+.+++-++.++.. ....+....
T Consensus 34 lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~i---i~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~v 109 (371)
T PF14664_consen 34 LLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFI---IRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGV 109 (371)
T ss_pred HCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhh---HhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence 3444 4999999999997775422 1222222 222321 2244588899999999887 334466555
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH-----HHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1626 KIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ-----LADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1626 ~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~-----~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
...+++. .++.++..|..+-+.+..++...|+=. +..+++.++. .....-...+.++..++......
T Consensus 110 vralvai----ae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 110 VRALVAI----AEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred HHHHHHH----HhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHHhCCcchh
Confidence 5555554 455788999999999999998777511 3333443332 22112333444555555554433
Q ss_pred cc-CC-cchHHHHHHHHhh---hcCCCh--hHHHHHHHHhHHHHhhhhhc-CCCChhhHHHHHHHHHhhcCCCCHHHHHH
Q 000201 1701 IS-MS-PLFLSILDRLKSS---LKDEKF--PLREASTKALGRLLLHQIQS-GPANTTVVVDILASVVSALHDDSSEVRRR 1772 (1866)
Q Consensus 1701 ~~-~~-~~~~~~~~~l~~~---~~~~~~--~~r~~a~~alg~ll~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~vR~~ 1772 (1866)
.+ .. ...+.++...... ...++. ..-+++..++..++..-.-. .... .-..-+..++..+.-+++++|+.
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~--~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM--NDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec--CCchHHHHHHHHHcCCCHHHHHH
Confidence 22 11 1234444444443 112222 23455667777766542111 0000 00245777788888899999999
Q ss_pred HHHHHHHHHhhCcch
Q 000201 1773 ALSALKSVAKANPSA 1787 (1866)
Q Consensus 1773 a~~~l~~~a~~~~~~ 1787 (1866)
.+..+.-+-+-++..
T Consensus 260 Ildll~dllrik~p~ 274 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPS 274 (371)
T ss_pred HHHHHHHHHCCCCCC
Confidence 999999888876544
No 255
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=78.55 E-value=19 Score=37.40 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=59.8
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+..+..+.+.|.+.+..+..-|+.+|..++++|+..+...+ ..++..+.+++.+ .++.|+..+...+...+..+.+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 55566666777888999999999999999999987654322 3566677777777 8899999999999998877653
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.55 E-value=23 Score=38.78 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=65.1
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcc
Q 000201 1707 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 1786 (1866)
Q Consensus 1707 ~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~ 1786 (1866)
...+++.+.+.+.+++..+|..|+..++..+..+.- .+.+.++.++....|+++.+|..|...++.+...+++
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-------nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-------NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-------ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 345666777788899999999999999988876542 2367889999988999999999999999999998887
Q ss_pred hhhhhH
Q 000201 1787 AIMVHV 1792 (1866)
Q Consensus 1787 ~~~~~l 1792 (1866)
.+...+
T Consensus 79 ~v~~~~ 84 (187)
T PF12830_consen 79 LVESRY 84 (187)
T ss_pred HHHHHH
Confidence 765443
No 257
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.55 E-value=1.6e+02 Score=34.28 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=89.2
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCC------cchhhhHhhhhHHHHHHhcCCC-----HhHHHHHH
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP------KDMIPYIGLLLPEVKKVLVDPI-----PEVRSVAA 877 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~------~~l~~~~~~ll~~L~~~l~d~~-----~~vR~~a~ 877 (1866)
.....+.+.+.+|+.+.. .-..+.+.+..+.....++ ..+.-.+-..+|.+...+.++. +.++ .++
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A 136 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIA 136 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHH
Confidence 345668889999987654 3334556666666532221 1111223345666666666655 3343 455
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHH
Q 000201 878 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 957 (1866)
Q Consensus 878 ~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l 957 (1866)
..|+.+++..|...+..++......-..+ ...-..+.+..+...+.+++--+.+..++..+.+..+.+|...+.++
T Consensus 137 ~~La~~a~~~~~~~La~il~~ya~~~fr~----~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 137 EALAQVAEAQGLPNLARILSSYAKGRFRD----KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 67777776555444444444332211111 01111222333444444444445555666666666677777777777
Q ss_pred HHhhhhhchhhHhHHHHHHHHHHhhccCC
Q 000201 958 KYLPRSLGVQFQNYLQQVLPAILDGLADE 986 (1866)
Q Consensus 958 ~~L~~~~g~~f~~~l~~il~~ll~~l~d~ 986 (1866)
..+.....-. .|+-.+++.++++.+..+
T Consensus 213 ~~ll~~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 213 KVLLPHVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred HHHhccccCC-CCcchHHHHHHHHHhCCc
Confidence 7666555433 345556666666666543
No 258
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=74.64 E-value=30 Score=36.03 Aligned_cols=124 Identities=17% Similarity=0.108 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcC----------------chh
Q 000201 590 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FEP 653 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~----------------~~p 653 (1866)
.+|...+.+++.++....|... .+.++.+.+.+.. ++...+..+..+..+.+...+. +..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4677788888888886655554 3577777777765 3567777888888888766431 111
Q ss_pred cHHhHHHHHHHHcCCC---C-HHHHHHHHHHHHHHHHhhcHhhH--HhHHHHHHhhcCCCChhhHHHHHHHH
Q 000201 654 YVIQMLPLLLVAFSDQ---V-VAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQLL 719 (1866)
Q Consensus 654 ~v~~llp~ll~~~~D~---~-~~VR~~a~~al~~i~~~l~~~~v--~~llp~L~~~L~~~~w~~r~~a~~~L 719 (1866)
....++..+...+... . ..+...+..++...+...+...+ ..+++.+++.|.+++- +..|+++|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 1223444444433322 2 77888888888888886666555 4588888888855543 66666654
No 259
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.29 E-value=4.1e+02 Score=38.04 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=121.7
Q ss_pred HHHhHhhhccchhcHHHHHHHHHhccCCCc-------hhHHHHHHHHHHHH-HhhccchhhhhHHHHHHHHHHHhCCCCh
Q 000201 1333 EAAETVTLVIDEEGVESLVSELLKGVGDNQ-------ASIRRSSAYLIGYF-YKNSKLYLVDEAPNMISTLIVLLSDSDS 1404 (1866)
Q Consensus 1333 ~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~-------~~vR~~a~~~l~~l-~~~~~~~~~~~~~~il~~L~~ll~d~~~ 1404 (1866)
.+.-.++....+..+++++..+..|..++. ..-|..+.+.+... ++....-+.+|+..++......+..-+.
T Consensus 1371 ~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~ 1450 (1621)
T KOG1837|consen 1371 NKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINA 1450 (1621)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 333333444456678899999998876321 23466555555443 5566677889999888887777654333
Q ss_pred hHHHHHHHHHHHHHhcCCc-chhh--hhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccC--C
Q 000201 1405 TTVAAAWEALSRVVASVPK-EVQP--SYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISG--S 1479 (1866)
Q Consensus 1405 ~v~~~A~~aL~~l~~~~~~-~~l~--~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~--~ 1479 (1866)
......|.-.. ..+. ..+. -++..+.+.+.+..+.. ++.. ..+. --..+++.-+.+....+ .
T Consensus 1451 s~~~~~~~~~~----~~~r~~~~~~~Lvl~cl~~~~~~Dt~~~---f~t~----~r~~--~~~~p~v~ql~n~~~e~~~~ 1517 (1621)
T KOG1837|consen 1451 SKHRWFWLLPV----NQSRKPLLLGTLVLNCLKDLFLFDTIES---FVTK----SRFE--LLSYPLVSQLVNVLLEFYAS 1517 (1621)
T ss_pred hhhhhhhhhcc----cccchhHHHHHHHHHHHHHHHhhhhhHH---HHhh----hhhh--hhhhhhHHHHHHhhccchhh
Confidence 32222221100 0000 0000 01111222222222111 1110 0000 01112222222211111 1
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 000201 1480 AELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCL 1559 (1866)
Q Consensus 1480 ~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l 1559 (1866)
..+-...+.+++...... +++++|+..++ |..... .....|..|+..+..++.+.|..+.+.+|+++|.+.+.+
T Consensus 1518 ~~v~~~li~~i~~~~~a~-~~d~~pl~~k~---l~~trs--s~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ 1591 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVAD-KDDLKPLNQKI---LKKTRS--SSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELM 1591 (1621)
T ss_pred hHHHHHHHHHHHhhccCC-hhhhHHHHHHH---HHHhcc--ccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHH
Confidence 112233344444444333 33477766555 233222 256899999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 000201 1560 QDSTRTVRSSAALALGKL 1577 (1866)
Q Consensus 1560 ~d~~~~vR~~Aa~aLg~L 1577 (1866)
.|.+++|...+...+-.+
T Consensus 1592 ED~~~~Ve~~~q~li~q~ 1609 (1621)
T KOG1837|consen 1592 EDEDDEVECLCQKLIRQL 1609 (1621)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999988887755554
No 260
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.18 E-value=69 Score=38.51 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhCcCchhcHHhHHHHHHH----HcCC---CCHHHHHHHHHHHHHHHHh-------hcHhhHHhHHHHH
Q 000201 635 GALLAFECLCEKLGRLFEPYVIQMLPLLLV----AFSD---QVVAVREAAECAARAMMSQ-------LSAQGVKLVLPSL 700 (1866)
Q Consensus 635 ~al~al~~L~~~l~~~~~p~v~~llp~ll~----~~~D---~~~~VR~~a~~al~~i~~~-------l~~~~v~~llp~L 700 (1866)
.++.++..+...++..+.+++..++..++. +..+ .-|+.|..--..++.+... +++..++.++..+
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 477888889999988888887766665543 3333 3688888776666666653 4666778889999
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHhhChh---h-----HHhhhcchhHHHhhhccCCC
Q 000201 701 LKGLEDKAWRTKQSSVQLLGAMAYCAPQ---Q-----LSQCLPKIVPKLTEVLTDTH 749 (1866)
Q Consensus 701 ~~~L~~~~w~~r~~a~~~L~~l~~~~~~---~-----~~~~l~~iv~~l~~~L~D~~ 749 (1866)
.-++++....+-..++.+|..+...... . ...++-.++..++.++.|+.
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999999999999999999988876543 1 23344455555666666654
No 261
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=73.83 E-value=2.9e+02 Score=36.06 Aligned_cols=318 Identities=16% Similarity=0.189 Sum_probs=153.1
Q ss_pred hHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhhcCCC---c----chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHH
Q 000201 813 LLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEP---K----DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 883 (1866)
Q Consensus 813 ~l~p~L~~~l~d--~~~~vr~~a~~~l~~l~~~l~~~---~----~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l 883 (1866)
.++..+.+.+.+ +..++|.+-|+++..+..-+... + .....++.+.+...+.+.. +.-...++-....+
T Consensus 129 ~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~l 206 (552)
T PF14222_consen 129 EFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTL 206 (552)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHH
Confidence 344444444433 35679999999888876433211 1 1223445555555555554 22233455555555
Q ss_pred HhhcCCCC----hh-hHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhC-----h------hHHHHHHHHHHHHhccCCh
Q 000201 884 IRGMGEEN----FP-DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----T------VYFEHILPDIIRNCSHQRA 947 (1866)
Q Consensus 884 ~~~~g~~~----~~-~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g-----~------~~l~~ll~~l~~~l~~~~~ 947 (1866)
.-..+++. +. .++..+...+++. ..|.-+++++..++-..- + .+++.++..++..-+ ..+
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~k-k~~ 282 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGK-KGW 282 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCC-Ccc
Confidence 55444443 44 4666666667654 378888888877654321 1 144555544442211 123
Q ss_pred hHHh-HHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhcc------CCChHHHHHHHHHHHHHHHhhcccchhchHHh---
Q 000201 948 SVRD-GYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLA------DENESVRDAALGAGHVLVEHYATTSLPLLLPA--- 1016 (1866)
Q Consensus 948 ~vR~-~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~------d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~--- 1016 (1866)
--++ ..+..+..+....|...-.|. ..++-.+++.-. .-+++=-.-+++|+-.++..+....-....|.
T Consensus 283 i~~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~ 362 (552)
T PF14222_consen 283 IPRDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSD 362 (552)
T ss_pred cCCChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence 3333 445566666666665433343 555444444321 11234334567777777765533321111110
Q ss_pred ----------------Hh-cccCCCch-HHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhh
Q 000201 1017 ----------------VE-DGIFNDNW-RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1078 (1866)
Q Consensus 1017 ----------------l~-~~l~d~~w-~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~ 1078 (1866)
+. ........ ..-......++.++..+-..-|.....++..... ..
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~-~~--------------- 426 (552)
T PF14222_consen 363 PSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSS-KP--------------- 426 (552)
T ss_pred CCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccC-CC---------------
Confidence 00 00000111 1122334455555544432222111000000000 00
Q ss_pred hHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHh--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhc
Q 000201 1079 RNEVLAAL-YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEI--MPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1154 (1866)
Q Consensus 1079 ~~~vl~~L-~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~--l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~ 1154 (1866)
..-.... +....|.. .-.+..++++...+...|+.+... ...+++.|.+..-+.++.+|..|..+|..+++..+
T Consensus 427 -~t~~~~f~f~~~~d~~-~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 427 -KTPFSSFSFGRNDDMV-TDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred -CCCccccccccccccc-ccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 0000000 00011211 112444566666666666665553 45778888888889999999999999999998763
No 262
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=73.04 E-value=2.5e+02 Score=40.99 Aligned_cols=159 Identities=15% Similarity=0.175 Sum_probs=87.1
Q ss_pred hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCCh-hHHHHHHHHHhccccccC
Q 000201 728 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTV 806 (1866)
Q Consensus 728 ~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~-~vr~al~~L~~~~~~~~~ 806 (1866)
..+..+++.++...-.++..+++.|+.-+......+...+..-.-++++..|+..+.+.+. .+..|++.|......+..
T Consensus 427 ~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~ 506 (1426)
T PF14631_consen 427 EVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS 506 (1426)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH
Confidence 3345566666666666888999999999999999888777322236788888887755443 566677777653221111
Q ss_pred CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhh
Q 000201 807 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 807 ~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~ 886 (1866)
.-...+.++..++..+.+-+..--+....++..++-. +...-....+.+.-.+.+.+..++...+...+-+.-.++..
T Consensus 507 ~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~--~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~ 584 (1426)
T PF14631_consen 507 ELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFS--DSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKH 584 (1426)
T ss_dssp HHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHH--HSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--CcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHH
Confidence 0011112222223333433333334456777776642 22222334566777778888888887776444443333443
Q ss_pred cC
Q 000201 887 MG 888 (1866)
Q Consensus 887 ~g 888 (1866)
++
T Consensus 585 la 586 (1426)
T PF14631_consen 585 LA 586 (1426)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 263
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=73.00 E-value=2.8e+02 Score=39.10 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=70.6
Q ss_pred ccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhh---hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q 000201 1466 PLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIP---ITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542 (1866)
Q Consensus 1466 ~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~---i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~ 1542 (1866)
.+|..++..|.+...++.+..+..|..+.-+. ..+.+..+.. ++....-.+..+ ......++|.+|+.|..++-.
T Consensus 394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRA-D~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRA-DSNMKKVLRETGSVTALAACALRNK-KESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHhccccc-cccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhcccc
Confidence 35666666666666566555555555554433 2222222211 111111122222 223456788888888776644
Q ss_pred CCCCch--HHHHHHHHHHhcCC--CH--HHHHHHHHHHHHH---H-hccCC-----hhhHHHHHHHHhccCChhHHHHHH
Q 000201 1543 ALKPFL--PQLQTTFIKCLQDS--TR--TVRSSAALALGKL---S-ALSTR-----VDPLVGDLLSSLQVSDAGIREAIL 1607 (1866)
Q Consensus 1543 ~~~~~l--p~L~~~l~~~l~d~--~~--~vR~~Aa~aLg~L---~-~~~~~-----~~~~l~~L~~~l~~~~~~vr~~~l 1607 (1866)
.-..|+ +.-+..++..|... +. .+-..|...|-++ + ...++ -...+..|++.|++..-.+...++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 322332 44455555555443 11 2222222222222 1 11111 123456677777766666666666
Q ss_pred HHHHHHHHhcC
Q 000201 1608 TALKGVLKHAG 1618 (1866)
Q Consensus 1608 ~aL~~vi~~~~ 1618 (1866)
-.|..+.....
T Consensus 552 GTLWNLSAR~p 562 (2195)
T KOG2122|consen 552 GTLWNLSARSP 562 (2195)
T ss_pred hhhhhhhcCCH
Confidence 67776665443
No 264
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=71.38 E-value=47 Score=37.34 Aligned_cols=138 Identities=19% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHH-HHHHHHHHHHhCcCchhcHH
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~a-l~al~~L~~~l~~~~~p~v~ 656 (1866)
.+...|..++....|..|...+....... ....++.+...+..-++|...... ...++.+... + .
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~------~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~-------~-~ 119 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKL------TEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK-------H-P 119 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH-------H-G
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhh------hHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh-------h-H
Confidence 45566666666556655554444323221 112456666667766777655433 2222222111 1 3
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
...+.+.....+++.-+|.++..++-..... .....++..+...+.++++.+|.+...+|..++...|+....
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4667777788888888888886655433332 445667777777788888888888888888888877766544
No 265
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.74 E-value=18 Score=35.85 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHH------HHHHHhccCChhHHHHHHHHHHHHHHh
Q 000201 1550 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVG------DLLSSLQVSDAGIREAILTALKGVLKH 1616 (1866)
Q Consensus 1550 ~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~------~L~~~l~~~~~~vr~~~l~aL~~vi~~ 1616 (1866)
+++..+++.|..+ ++.+-..|+.-+|.++...|+-..++. .++..+..++++||+.++.|+..++.+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5677777777554 677888889999999888777666654 366777889999999999999988753
No 266
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=70.67 E-value=18 Score=37.41 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
.+-..+..+|.+.+++||+.|.+|+-.+- +|.+.+.-+.|...+.|. ..|+.+..+....-...+....-+.++
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~ehR~~l~ 90 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEEEHRPELM 90 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCHHHHhHHH
Confidence 45556778999999999999999998763 566666666777776654 455555544332222235556677888
Q ss_pred HHHHHhh
Q 000201 816 PIVHRGL 822 (1866)
Q Consensus 816 p~L~~~l 822 (1866)
|++++.+
T Consensus 91 pvvlRIL 97 (141)
T PF07539_consen 91 PVVLRIL 97 (141)
T ss_pred HHHHHHH
Confidence 8888765
No 267
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.47 E-value=35 Score=34.20 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=56.2
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHH---HHHHHHHHhC--------CCChhHHHHHHHH
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPN---MISTLIVLLS--------DSDSTTVAAAWEA 1413 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~---il~~L~~ll~--------d~~~~v~~~A~~a 1413 (1866)
.....++..|.+.+++.++.|+.-++.+|..++......|...+.. ++..+...-. +....||..|-++
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4577899999999999999999999999999999887777665543 3444443322 2344789999888
Q ss_pred HHHHHh
Q 000201 1414 LSRVVA 1419 (1866)
Q Consensus 1414 L~~l~~ 1419 (1866)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 887753
No 268
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.36 E-value=47 Score=34.33 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=54.0
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhcc------CCChHHHHHHHHHHHHHHh
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT------DTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~------D~~~~VR~aA~~aL~~l~~ 765 (1866)
+..+..+...|.+.+.++..-|+.+|..++++|+..+...+ ..++..+.+++. .+++.|+......+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33444455666788899999999999999999987654322 234445555554 3678999999999988887
Q ss_pred hcc
Q 000201 766 VIK 768 (1866)
Q Consensus 766 ~i~ 768 (1866)
.+.
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 664
No 269
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.75 E-value=5.2 Score=31.56 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHH
Q 000201 719 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 759 (1866)
Q Consensus 719 L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~a 759 (1866)
|+.+....|.-+.. +.+...+.+.+.|+++.||++|...
T Consensus 3 l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45555555554433 3777888889999999999999865
No 270
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.55 E-value=15 Score=36.47 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=38.9
Q ss_pred ChhhHHHHHHHHHHHHhhChhh--HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 708 AWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 708 ~w~~r~~a~~~L~~l~~~~~~~--~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+..+-.-||.-||.++...|.. +...+ ..-..+++++++++++||..|..|+..+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4455556777788888776643 22222 344567889999999999999999988763
No 271
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.51 E-value=76 Score=33.06 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=64.6
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~d-~~~~v~~~A~~aL~~l~~~ 1420 (1866)
..+....+..|..++.+.++.+...|+.++..+.++.+..|...+ ..++..|..++.+ .+..|+..+...+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 455677888888889999999999999999999999987765443 4677778888877 7889999998888888766
Q ss_pred CCc
Q 000201 1421 VPK 1423 (1866)
Q Consensus 1421 ~~~ 1423 (1866)
.+.
T Consensus 112 f~~ 114 (144)
T cd03568 112 FKN 114 (144)
T ss_pred hCC
Confidence 654
No 272
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.20 E-value=45 Score=34.25 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=59.2
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc--chhHHHhhhccC---CChHHHHHHHHHHHHHHhh
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLTD---THPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~~l~~~L~D---~~~~VR~aA~~aL~~l~~~ 766 (1866)
+-+..+..|.+.|.+++..+..-|+.+|..+..+++..+...+. ..+..+.+++.. .++.||..+...+......
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34667777778888899999999999999999999876543222 334445566654 5789999999999998887
Q ss_pred ccc
Q 000201 767 IKN 769 (1866)
Q Consensus 767 i~~ 769 (1866)
+++
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 765
No 273
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.13 E-value=3.6e+02 Score=34.83 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=102.8
Q ss_pred ccHHHHHHhhcc----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 000201 1466 PLLPIFLQGLIS----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGG 1541 (1866)
Q Consensus 1466 ~ilp~l~~~L~~----~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~ 1541 (1866)
.+-|+..++..+ ++++....|..++..+.--. . .|...-.|.+++.+.....+.+|..+.-.||.++-...
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS-~----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS-F----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh-H----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344666666665 57888888888888877433 2 34444556778888766678899999988888765543
Q ss_pred CCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 000201 1542 IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLS-ALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLK 1615 (1866)
Q Consensus 1542 ~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~-~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~ 1615 (1866)
.+.......+.+.|.|.+..||..+.-.+..|+ .-+-.+...++.+...+.+++.++..-+-.-+.++-.
T Consensus 967 ----~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 ----TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred ----hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 466777888899999999999999999998884 3334566678888888888887777665555555543
No 274
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.77 E-value=17 Score=33.93 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000201 1506 VIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALG 1575 (1866)
Q Consensus 1506 v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg 1575 (1866)
-..++.|+..++....+.++|..++.++..++...+..++.--+.+...+..+..+.++.+-..|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3455667777765556789999999999999998888888888888888888888888877777776653
No 275
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.52 E-value=2.2e+02 Score=39.80 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHhhH-----HhHHHHHHhhcC---CCChhhHH-------HH
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGV-----KLVLPSLLKGLE---DKAWRTKQ-------SS 715 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~----l~~~~v-----~~llp~L~~~L~---~~~w~~r~-------~a 715 (1866)
+.-++..+.++..|....||..|.+++=+++.. +++..+ ..++|.| ..-. -++|+.+. ..
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLL-d~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLL-DSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHh-ccccccchhhhcchhHhhhhhhhh
Confidence 345677778888999999999999998888763 333323 2233322 2111 13465443 37
Q ss_pred HHHHHHHHhhChhhHHhh---------hcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 716 VQLLGAMAYCAPQQLSQC---------LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 716 ~~~L~~l~~~~~~~~~~~---------l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+..|+.+++-.++++... ...++..+..+..|.++++.-+|.+++..+..
T Consensus 1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 788888888877764321 22344445556678889999999988887764
No 276
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=67.28 E-value=2.8e+02 Score=33.34 Aligned_cols=54 Identities=9% Similarity=0.011 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000201 1522 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSA 1579 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~ 1579 (1866)
+...|..+-+.+....+..|. ....-+..-+.+..|.+..||..|.+-|..++.
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPS----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCK 90 (460)
T ss_pred chHHHHHHHHHHHHHHhhCch----hhhHHHHhhhccccccchhhHHHHHhccchhcc
Confidence 345566777777776665432 123334445566778889999999999988854
No 277
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=66.42 E-value=58 Score=42.44 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=101.0
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH-------hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 687 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~-------~llp~ll~~~~D~~~~VR~~a~~al~~i~~~ 687 (1866)
.|+..-..++..+++...-+++.-++..+.-+.+. +..|+. ..+|.+..++...++.|..+++.++..+...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 45554445555666678888888888888876553 333433 4678999999999999999999999999877
Q ss_pred hcHhhH--HhHHHHHHhhcCC------CChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhcc-CCChHHHHHHH
Q 000201 688 LSAQGV--KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLT-DTHPKVQSAGQ 757 (1866)
Q Consensus 688 l~~~~v--~~llp~L~~~L~~------~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~-D~~~~VR~aA~ 757 (1866)
.....+ +..+|.|+..|-+ .+|++-..+|..|..+....+..-...+ ..-++.++.+.. -.++++-++|+
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 665543 7789999988854 2488888899999888855433211111 123344444333 33467778887
Q ss_pred HHHHHHH
Q 000201 758 TALQQVG 764 (1866)
Q Consensus 758 ~aL~~l~ 764 (1866)
.-|..+-
T Consensus 677 ~vL~~lW 683 (717)
T KOG1048|consen 677 SVLDVLW 683 (717)
T ss_pred HHHHHHH
Confidence 7776664
No 278
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.38 E-value=2.6e+02 Score=32.62 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcch
Q 000201 1720 DEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSA 1787 (1866)
Q Consensus 1720 ~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~ 1787 (1866)
++++.+|+.-++|+--++........--++-..+++..+..+ -+++|+|+++.+.+..+.+.+|+.
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~--e~ded~~~ace~vvq~Lv~~e~~~ 320 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKW--EEDEDIREACEQVVQMLVRLEPEI 320 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcC--CCcHHHHHHHHHHHHHHHhccccc
Confidence 457799999999987766532211000002234677777766 478999999999999999877653
No 279
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=65.93 E-value=38 Score=35.65 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCC--------CchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Q 000201 1326 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGD--------NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIV 1397 (1866)
Q Consensus 1326 ~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~--------~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ 1397 (1866)
.+...+.+++-.++..+.+..+++++-.+.+|... .....+.+-..++..+++.-+..+.+|+..+++....
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888899999999999999743 2233344555667788888889999999999999888
Q ss_pred HhCC
Q 000201 1398 LLSD 1401 (1866)
Q Consensus 1398 ll~d 1401 (1866)
+|+.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 8763
No 280
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=65.82 E-value=55 Score=34.03 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=56.2
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+..+..+.+.|.+.+.++..-|+.+|..++++|+..+...+ ..++..+.+++. ..++.|+..+...+...+..+.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 44555566677788899999999999999999887543321 245555555554 57789999999999988877754
No 281
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.23 E-value=2.8e+02 Score=32.60 Aligned_cols=149 Identities=10% Similarity=0.073 Sum_probs=88.3
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHHhhcChhHHHH-HHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHH
Q 000201 1632 VLKDLVYH-DDDHVRVSAASILGIMSQCMEDGQLAD-LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 1709 (1866)
Q Consensus 1632 ~L~~~l~~-~~~~vr~~aa~~l~~L~~~~~~~~~~~-~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~ 1709 (1866)
.+.+++.+ .+.++|..+-.|+.-|-...+.+.... +++ . ...+.
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~--------------~--------------------gg~~~ 332 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE--------------K--------------------GGLDK 332 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH--------------h--------------------cChHH
Confidence 44555555 467788777777777665555543322 111 1 12234
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhH-----HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000201 1710 ILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVV-----VDILASVVSALHDDSSEVRRRALSALKSVAKAN 1784 (1866)
Q Consensus 1710 ~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~-----~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~ 1784 (1866)
++..+.++ +++|.+.+.+..++..+.....+.+. +.+ .-.+..+-..+ ....|.|.|..+++.++-+.
T Consensus 333 ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdhsa---~~ie~G~a~~avqAmkahP--~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 333 IITLALRH--SDDPLVIQEVMAIISILCLRSPDHSA---KAIEAGAADLAVQAMKAHP--VAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHc--CCChHHHHHHHHHHHHHHhcCcchHH---HHHhcchHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHhh
Confidence 44444443 34455666666666665554321110 111 11222222221 24578999999999999877
Q ss_pred cchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHh
Q 000201 1785 PSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHA 1821 (1866)
Q Consensus 1785 ~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l 1821 (1866)
.+.-.+.++.=+..|....+..+..++.++..|+-.+
T Consensus 406 ~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 406 AENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 6655667777788888888888999999888887666
No 282
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=64.73 E-value=46 Score=36.49 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=63.2
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH---HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v---~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
+...++.+++.+.+++..||..|.+.+..+.+ .|+ ...+|.++....|++..+|..|...+..+.+..+.-+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILR----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567778888889999999999999998876 232 56899999999999999999999999999887776655
Q ss_pred hhhcc
Q 000201 732 QCLPK 736 (1866)
Q Consensus 732 ~~l~~ 736 (1866)
..+.+
T Consensus 82 ~~~~~ 86 (187)
T PF12830_consen 82 SRYSE 86 (187)
T ss_pred HHHHH
Confidence 44333
No 283
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.17 E-value=6.4e+02 Score=36.30 Aligned_cols=63 Identities=27% Similarity=0.285 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc---cccchHHHHhcccCCCCccchhhHHH
Q 000201 1120 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCI 1182 (1866)
Q Consensus 1120 l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~~vr~~a~~ 1182 (1866)
++.+...++....+++...|..|...+..++..+|+. .+|+++|.+.+.+.|.+.++...+-.
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~ 1604 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQK 1604 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHH
Confidence 4444555555556778899999999999999999987 47999999999998877766554433
No 284
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=63.96 E-value=62 Score=36.30 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCC-CCcchhhhH-HHHHHHHHhhCCCcccCC
Q 000201 1627 IRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASS-PSWAARHGS-VLVFATFLRHNPSAISMS 1704 (1866)
Q Consensus 1627 ~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~-~~~~~r~~~-~~~L~~~l~~~p~~~~~~ 1704 (1866)
+.....+.....+...+.|..+..+++......... .++.+-.+... ..|...-.. ...+..++...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 445556666667777788888777776654333321 22223233332 233222111 11222222221
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC
Q 000201 1705 PLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKAN 1784 (1866)
Q Consensus 1705 ~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~ 1784 (1866)
+...+.+..-+.|+++-.|++|..++-.+... .....++..+...+.|++.-||.+...+|+.++...
T Consensus 119 ---~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ---GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ---HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 35677888889999999999987776444433 145677777778889999999999999999999999
Q ss_pred cchhhhhHhh
Q 000201 1785 PSAIMVHVAL 1794 (1866)
Q Consensus 1785 ~~~~~~~l~~ 1794 (1866)
|+.+.+++..
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887765
No 285
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=62.30 E-value=9.5 Score=35.83 Aligned_cols=58 Identities=16% Similarity=0.321 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc
Q 000201 710 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 710 ~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
..|++++..|++++...|-.+...+|+++..|....+| ...|+..+-++|..+-+.=.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 56899999999999999999888899999888888887 66789999999998876443
No 286
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=61.94 E-value=5.6e+02 Score=34.96 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=79.8
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc
Q 000201 1706 LFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANP 1785 (1866)
Q Consensus 1706 ~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~ 1785 (1866)
....+...+...+.++++..-.....|+..+..-..-. +. + ..+-+..-....|..-..++.....++.+++...|
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~-~~--~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFP-PK--K-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP 513 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccC-Cc--c-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 45566677777777888887777777777665433211 10 0 01112222222233333667778888999999888
Q ss_pred chhhhhHh--hHHHHHHhhhccCcchhhhhHHHHHHHhhcccccchhHHHHHHHh
Q 000201 1786 SAIMVHVA--LFGPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFI 1838 (1866)
Q Consensus 1786 ~~~~~~l~--~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~ 1838 (1866)
+.+...+. ...-++..++-.++..+..||..-+-.++.. .+ +...+...+
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~-~~--R~e~i~~ll 565 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV-DG--RLEAIQALL 565 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC-Cc--HHHHHHHHH
Confidence 88777765 5677888888888888888888777777652 22 444555544
No 287
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=60.48 E-value=16 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=25.7
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMM 685 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~ 685 (1866)
..+|.|..++.+++..|++.|.+++..++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47888999999999999999999998875
No 288
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=59.21 E-value=2.3e+02 Score=37.88 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcccc
Q 000201 1078 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1157 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~ 1157 (1866)
+..+++..+|....|..+.-|. +.-|..++...|..+..+-..+.....+-+.+.....-..|..++..++..+.+..
T Consensus 14 RyKkLV~~iFPr~~e~gpn~s~--m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~ 91 (819)
T KOG1877|consen 14 RYKKLVDNIFPRSPEDGPNKSK--MEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQI 91 (819)
T ss_pred HHHHHHHHhCCCCCCCCccccc--HHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhh
Confidence 3445555565533333322222 22344455555654444444444444444444444444678888888888877653
Q ss_pred ---ccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchh-hHHhhHhhHHHHHHHhhcC-Cc----HHHHHHHHHHHHH
Q 000201 1158 ---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS-QLLSFMDELIPTIRTALCD-SI----LEVRESAGLAFST 1228 (1866)
Q Consensus 1158 ---l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~-~l~~~l~~ll~~l~~~L~d-~~----~~vr~~A~~al~~ 1228 (1866)
...++..+.+.|.+..++.+.-+|.++..+....... ...--++.+++.+.+.... .+ ..+|-+...++..
T Consensus 92 n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa 171 (819)
T KOG1877|consen 92 NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSA 171 (819)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHH
Confidence 4556666777777778889999999888776433211 1111124444444433322 22 3345444445444
Q ss_pred HHHH---------hchh-hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHH
Q 000201 1229 LFKS---------AGMQ-AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALA 1298 (1866)
Q Consensus 1229 l~~~---------~g~~-~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La 1298 (1866)
+... ++.. ..+.++|.++..+...+..+... ++.-.+...+.....+...-...|-.++-
T Consensus 172 ~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~----------S~s~~~~~~~~~a~~~~~~p~vla~~cl~ 241 (819)
T KOG1877|consen 172 VVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRE----------SDSRIRTFSLLAAGDKTSDPKVLAERCLR 241 (819)
T ss_pred HHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhccccc----------CcccccCccccccCCcccCcchhHHHHHH
Confidence 4221 2221 24566777765554332100000 00000000000000000000122333344
Q ss_pred HHhCCC-chhhHhhHHHHHHHhcCCC-CHHHH-HHHHHHHhHhhhccchhc----HHHHHHHHHhcc-CCCchhHHHHHH
Q 000201 1299 EVAGPG-LNFHLGTILPALLSAMGDD-DMDVQ-SLAKEAAETVTLVIDEEG----VESLVSELLKGV-GDNQASIRRSSA 1370 (1866)
Q Consensus 1299 ~~~g~~-l~~~l~~il~~L~~~l~~~-~~~vr-~~a~~~l~~l~~~~~~~~----~~~ll~~L~~~l-~~~~~~vR~~a~ 1370 (1866)
+..|.+ +...+..++..++..+... -+..- ..+..++..++..+..++ +..++..|.... ....++.+.+.+
T Consensus 242 ~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv 321 (819)
T KOG1877|consen 242 ELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLGLSIV 321 (819)
T ss_pred HhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCccccchhH
Confidence 444433 4446777788787776432 12222 345556666666444433 455666665544 233444444444
Q ss_pred HHHHHH
Q 000201 1371 YLIGYF 1376 (1866)
Q Consensus 1371 ~~l~~l 1376 (1866)
.+-...
T Consensus 322 ~~~~~~ 327 (819)
T KOG1877|consen 322 LVSIAL 327 (819)
T ss_pred HHHHHH
Confidence 443333
No 289
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=58.91 E-value=5.2e+02 Score=33.58 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHH---HHHhh-----cC------CCChhhHHHHHHHHH
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP---SLLKG-----LE------DKAWRTKQSSVQLLG 720 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp---~L~~~-----L~------~~~w~~r~~a~~~L~ 720 (1866)
...++..+.....+.+..+|-.++..+..+.+.++-..-+.++. ...+. |+ ..+.-+-++++..++
T Consensus 244 l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a 323 (993)
T COG5234 244 LEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA 323 (993)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH
Confidence 34456666666677788999999999988888776543333333 21222 11 124446677777776
Q ss_pred HHHhhChhhHHhhhcchhHHHhhhccCC--------ChHHHHHHHHHHHHHHhhccc---hhHHh-HHHHHHH-hhCCCC
Q 000201 721 AMAYCAPQQLSQCLPKIVPKLTEVLTDT--------HPKVQSAGQTALQQVGSVIKN---PEIAS-LVPTLLM-GLTDPN 787 (1866)
Q Consensus 721 ~l~~~~~~~~~~~l~~iv~~l~~~L~D~--------~~~VR~aA~~aL~~l~~~i~~---~~i~~-lv~~L~~-~l~d~~ 787 (1866)
++...+-.+..++ +.|.+.+.++=+ -..+|.+++--+-.+....++ +.++. ++-.++. ++-||.
T Consensus 324 -la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 324 -LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred -Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 6665555555543 444444444321 135677766444444333222 22332 3333333 677888
Q ss_pred hhHHH
Q 000201 788 DHTKY 792 (1866)
Q Consensus 788 ~~vr~ 792 (1866)
-.+|.
T Consensus 401 l~vRr 405 (993)
T COG5234 401 LNVRR 405 (993)
T ss_pred hhhhh
Confidence 78873
No 290
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.89 E-value=58 Score=32.40 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=49.2
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcc--hhHHHhh------hccCCChHHHHHHHHHHHHH
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK--IVPKLTE------VLTDTHPKVQSAGQTALQQV 763 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~--iv~~l~~------~L~D~~~~VR~aA~~aL~~l 763 (1866)
+.+.++..+.+.|.+.+|++..-|+.+|-.+.+++++.+...+.. ....++. .-.+.+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 346677778888899999999999999999999988765443221 1112211 11245678888877766554
No 291
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=58.48 E-value=56 Score=43.54 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHH
Q 000201 1392 ISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIF 1471 (1866)
Q Consensus 1392 l~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l 1471 (1866)
+..|+..++.++..+.+.+...+...+...... -++..+.+-.-.+.+. .....+.|+.-| +-..++..+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~y~~~t~s~------~~~~il~~~~~P-~~K~~~~~l 75 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP---WLVNGLVDYYLSTNSQ------RALEILVGVQEP-HDKHLFDKL 75 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---HHHHHHHHHHhhcCcH------HHHHHHHhcCCc-cHHHHHHHH
Confidence 456677777777777777777776666543221 1122222111111100 000112222222 112234444
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHH
Q 000201 1472 LQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQL 1551 (1866)
Q Consensus 1472 ~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L 1551 (1866)
-+.+. .+.-|..++..|+.++..-+.-..+-.-..++.-|++.+....+..+-..|+.+|..|+-.++..+.+|+|.|
T Consensus 76 ~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~L 153 (668)
T PF04388_consen 76 NDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDL 153 (668)
T ss_pred HHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 44444 3467889999999999876432222222356667777776556777888999999999999999999999999
Q ss_pred HHHHHHHh
Q 000201 1552 QTTFIKCL 1559 (1866)
Q Consensus 1552 ~~~l~~~l 1559 (1866)
..+|.+.+
T Consensus 154 f~If~Rl~ 161 (668)
T PF04388_consen 154 FNIFGRLL 161 (668)
T ss_pred HHHHHHHH
Confidence 99999876
No 292
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=58.32 E-value=38 Score=32.18 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 000201 1521 FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS--TRTVRSSAALALGKL 1577 (1866)
Q Consensus 1521 ~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~--~~~vR~~Aa~aLg~L 1577 (1866)
.+|.+|..|-..|+.++++.+......-|.+..++.+.+.|+ +...+--|..+|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999887777789999999999988 445666677776665
No 293
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=58.14 E-value=13 Score=28.73 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.7
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
..+|.+.+++...++.++..++++|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 57888888998889999999999999875
No 294
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.00 E-value=22 Score=38.38 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=67.7
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc---c-
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---N- 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~---~- 769 (1866)
...+|.+.++|.+-+...|.-|-+-+..+....++.+...||+++..+-..|...+.+|-..+.+.|.++..... .
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 567888999998877777777777777777777777778889999999999998899999999999998875433 1
Q ss_pred --hhHHhHHHHHH
Q 000201 770 --PEIASLVPTLL 780 (1866)
Q Consensus 770 --~~i~~lv~~L~ 780 (1866)
|+..+++|.+-
T Consensus 193 LVPfYRQlLp~~n 205 (262)
T KOG3961|consen 193 LVPFYRQLLPVLN 205 (262)
T ss_pred hhhHHHHhhhhhh
Confidence 45566666553
No 295
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.98 E-value=4.6e+02 Score=37.01 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=117.9
Q ss_pred CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHH----HHhhcChhHHHHHHHH
Q 000201 1598 SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDD---HVRVSAASILGI----MSQCMEDGQLADLLQE 1670 (1866)
Q Consensus 1598 ~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~---~vr~~aa~~l~~----L~~~~~~~~~~~~l~~ 1670 (1866)
+..++|...++++-.++...|..+... ...+++.+....+...+ .+.+.+=.|+.- +...+|.+.+..+++.
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidt 932 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDT 932 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHH
Confidence 446677777788888888888775533 44555544443333322 222222222222 2334555555555544
Q ss_pred HHhccCCC-CcchhhhHH---HHHHHHHhh---------------------CCCc-ccCCcchHHHHHHHHhhhcCCChh
Q 000201 1671 LLNLASSP-SWAARHGSV---LVFATFLRH---------------------NPSA-ISMSPLFLSILDRLKSSLKDEKFP 1724 (1866)
Q Consensus 1671 ll~~~~~~-~~~~r~~~~---~~L~~~l~~---------------------~p~~-~~~~~~~~~~~~~l~~~~~~~~~~ 1724 (1866)
++.-.... +......++ -++...++. .|.. ++...+|--+...+.+.++|+.++
T Consensus 933 l~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~e 1012 (1610)
T KOG1848|consen 933 LLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAE 1012 (1610)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHH
Confidence 43311111 111111111 122233322 1111 112346777788889999999999
Q ss_pred HHHHHHHHhHHHHhhhhhc-CCCChhhH-HHHHHHHHhhcCC---CCHHHHHH-------HHHHHHHHHhhCcchh----
Q 000201 1725 LREASTKALGRLLLHQIQS-GPANTTVV-VDILASVVSALHD---DSSEVRRR-------ALSALKSVAKANPSAI---- 1788 (1866)
Q Consensus 1725 ~r~~a~~alg~ll~~~~~~-~~~~~~~~-~~~l~~l~~~l~~---~~~~vR~~-------a~~~l~~~a~~~~~~~---- 1788 (1866)
+|..|++.+=..+..++.. .+..+... -.++-+++.+-.. +.+..+.. ....++-+++..++.+
T Consensus 1013 VRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~ll 1092 (1610)
T KOG1848|consen 1013 VRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLL 1092 (1610)
T ss_pred HhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999998888866654 32112111 1222222221100 22222222 3344444444322222
Q ss_pred -----hhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhh--cccccchhHHHHHHHhh
Q 000201 1789 -----MVHVALFGPALAECLKDGSTPVRLAAERCAVHAF--QLTRGSEYIQGAQKFIT 1839 (1866)
Q Consensus 1789 -----~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~--~~~~~~~~~~~~~~~~~ 1839 (1866)
......++--|.+..-+.+..++.++-+|+-.++ .+.-++.+ ..+.+++.
T Consensus 1093 nln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln-~~~~~k~n 1149 (1610)
T KOG1848|consen 1093 NLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLN-ATFTLKIN 1149 (1610)
T ss_pred hcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhcccc-chHHHHhh
Confidence 2223444555555555677889999999998776 33333322 34555553
No 296
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.48 E-value=2.1e+02 Score=29.62 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhH--hhHHHHHHhhhccCc-ch---hhhhHHHHHHHhhcc
Q 000201 1751 VVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHV--ALFGPALAECLKDGS-TP---VRLAAERCAVHAFQL 1824 (1866)
Q Consensus 1751 ~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l--~~l~p~l~~~~~~~~-~~---vk~aae~a~~~l~~~ 1824 (1866)
....+..+...+.+.++.+...|+..+-.+.++++..+...+ ..++..|.+.+..+. .+ ||.-+...+..-..-
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 456677777788889999999999999999999988776554 346667777665432 23 786666555555544
Q ss_pred cccchhHHHHHHHhhh
Q 000201 1825 TRGSEYIQGAQKFITG 1840 (1866)
Q Consensus 1825 ~~~~~~~~~~~~~~~~ 1840 (1866)
..++..+..|.+....
T Consensus 120 f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 120 FKSDPELSLIQDTYKR 135 (140)
T ss_dssp TTTSTTGHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHH
Confidence 4444456666665543
No 297
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=56.35 E-value=4.4e+02 Score=31.91 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=110.9
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH-hchh---h------H-hhHHHHHHHhccCCCchhHHHHHHHHHhhcc
Q 000201 1201 DELIPTIRTALCDSILEVRESAGLAFSTLFKS-AGMQ---A------I-DEIVPTLLHALEDDQTSDTALDGLKQILSVR 1269 (1866)
Q Consensus 1201 ~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~-~g~~---~------~-~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~ 1269 (1866)
..++..+...+..-+.+.|..+...++.+... .|.. . . .+++..|+...++++..-.+-.-+++++...
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 34555666677777777777777777766543 2211 1 1 3344555555555554444444444443211
Q ss_pred ccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc------
Q 000201 1270 TTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID------ 1343 (1866)
Q Consensus 1270 ~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~------ 1343 (1866)
.+...+ .. +..+..+++++..++=++...+...+..++....
T Consensus 155 --~l~~~i----L~--------------------------~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~f 202 (335)
T PF08569_consen 155 --SLAKII----LY--------------------------SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEF 202 (335)
T ss_dssp --HHHHHH----HT--------------------------SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred --HHHHHH----hC--------------------------cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHH
Confidence 110000 00 1122224555566666666666666666554321
Q ss_pred -hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhcc--chhhhhH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 000201 1344 -EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSK--LYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVV 1418 (1866)
Q Consensus 1344 -~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~--~~~~~~~--~~il~~L~~ll~d~~~~v~~~A~~aL~~l~ 1418 (1866)
...++.++..+...+.+++--+|..++.++|.+..... ..+..|+ +.-+..++.+++|+...++-.|+..+.-++
T Consensus 203 l~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 203 LSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 24467788888888899999999999999999975332 2233443 567888899999999999999999999887
Q ss_pred hcC
Q 000201 1419 ASV 1421 (1866)
Q Consensus 1419 ~~~ 1421 (1866)
.+-
T Consensus 283 ANp 285 (335)
T PF08569_consen 283 ANP 285 (335)
T ss_dssp H-S
T ss_pred hCC
Confidence 653
No 298
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=56.35 E-value=60 Score=34.45 Aligned_cols=117 Identities=15% Similarity=0.011 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh--hcchhHHHhhhc
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC--LPKIVPKLTEVL 745 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~--l~~iv~~l~~~L 745 (1866)
...+++|..+.-++.++++.-.....+.+-+.+...+.+........++.++..+....|+.-... -+.+.+.+....
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 356788999988888886443333334455555555565556677888888888888877654432 246677777777
Q ss_pred c--CCChHHHHHHHHHHHHHHhhc--cchhHHhHHHHHHHhhC
Q 000201 746 T--DTHPKVQSAGQTALQQVGSVI--KNPEIASLVPTLLMGLT 784 (1866)
Q Consensus 746 ~--D~~~~VR~aA~~aL~~l~~~i--~~~~i~~lv~~L~~~l~ 784 (1866)
. ..+..++.+++++|..-+..- ++...+..++.|.+...
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 7 667888889888887655311 11223566667766663
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.24 E-value=68 Score=33.28 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhH-hhHHHHHHHhhcCC--cHH-
Q 000201 1142 AGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCDS--ILE- 1217 (1866)
Q Consensus 1142 A~~~L~~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l-~~ll~~l~~~L~d~--~~~- 1217 (1866)
...-+.+.++.- +..-...+..+.+.+.++++++...++..|..++.++|+.....+. ..++..+.+.+.+. .+.
T Consensus 25 ~~l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 25 LILEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 333444555433 2233456677778888899999999999998888888754332211 23444444443322 222
Q ss_pred -HHHHHHHHHHHHHHHhc
Q 000201 1218 -VRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1218 -vr~~A~~al~~l~~~~g 1234 (1866)
||+.+...+......+.
T Consensus 104 ~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 89888887777776664
No 300
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=56.14 E-value=77 Score=37.64 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=62.8
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh--hhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ--CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~--~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
+-+..+..+.+.|++.+..+..-|+.++++++.+|++.+.. +-..+...+..++. ..|+.|+..-...+...++.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 33666777777888999999999999999999999876533 22345556666777 6788888887777777776555
Q ss_pred chhHHhHHHHHHHh
Q 000201 769 NPEIASLVPTLLMG 782 (1866)
Q Consensus 769 ~~~i~~lv~~L~~~ 782 (1866)
+.---.+++.+++.
T Consensus 122 ~Dp~lsLi~~l~~k 135 (462)
T KOG2199|consen 122 KDPSLSLISALYKK 135 (462)
T ss_pred cCcchhHHHHHHHH
Confidence 42222344444443
No 301
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=55.49 E-value=2.7e+02 Score=31.13 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhh-hHHHHHHHHHhhCCCcccCCcc
Q 000201 1628 RVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARH-GSVLVFATFLRHNPSAISMSPL 1706 (1866)
Q Consensus 1628 ~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~-~~~~~L~~~l~~~p~~~~~~~~ 1706 (1866)
....++.....++.-+.|-.+...+...-....++.+. .+..++.. -..|..-- .+...++.++.+.
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~-~~~~~l~~--~~~Wd~vD~~~~~i~g~~~~~~--------- 113 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPEDLP-LLEELITT--KSWWDTVDSLAKVVGGILLADY--------- 113 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHcC--CchHHHHHHHHHHHhHHHHhCC---------
Confidence 34444444555555567777777666655444443322 23333332 22333211 1111222223332
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcc
Q 000201 1707 FLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS 1786 (1866)
Q Consensus 1707 ~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~ 1786 (1866)
+.+.+.+..-..|++.-.|++|+.+. +...... ....++..+...++|+..=|+.+...+|+.+++..|+
T Consensus 114 -~~~~~~l~~W~~s~~~W~rR~ai~~~---l~~~~~~------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 114 -PEFEPVMDEWSTDENFWLRRTAILHQ---LKYKEKT------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred -hhHHHHHHHHHcCCcHHHHHHHHHHH---HHHHHcc------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 23356777888999999999887652 2221111 2234455555667889999999999999999999999
Q ss_pred hhhhhHhh
Q 000201 1787 AIMVHVAL 1794 (1866)
Q Consensus 1787 ~~~~~l~~ 1794 (1866)
.+.+++..
T Consensus 184 ~V~~fl~~ 191 (208)
T cd07064 184 WVRDFVAA 191 (208)
T ss_pred HHHHHHHH
Confidence 88877754
No 302
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=54.41 E-value=1e+02 Score=31.64 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=56.6
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhccCC--ChHHHHHHHHHHHHHHhhcc
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~D~--~~~VR~aA~~aL~~l~~~i~ 768 (1866)
-+..+..+.+.|.+++..+..-|+.+|..+..+|+..+...+ ..++..+..++.++ ++.|+..+...+...+..+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 355666677788889999999999999999999987654322 24556666666653 34599999988888887665
No 303
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=54.25 E-value=4.7e+02 Score=31.62 Aligned_cols=264 Identities=14% Similarity=0.086 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhh
Q 000201 1363 ASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRD 1442 (1866)
Q Consensus 1363 ~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~ 1442 (1866)
...++.|..+++.+|++-+ +.....+..-+.+.+|.|..+|..|..-|-.+++. +.++.+.+.+.+.+....-
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~sl 110 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKASL 110 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHHH
Confidence 4456788899999987644 23345566667788899999999998888777765 5666666666666653211
Q ss_pred hhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhh-hhhHHHHHHhcCCC
Q 000201 1443 KERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVI-PITGPLIRIIGDRF 1521 (1866)
Q Consensus 1443 ~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~-~i~~~Li~~l~~~~ 1521 (1866)
. ..|-+ ...++..+|+.+..-|..-+--.+++-+..-+. .|+..+-..+.+-
T Consensus 111 ~-------------------------~Lf~~-~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dV- 163 (460)
T KOG2213|consen 111 T-------------------------GLFGQ-IEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDV- 163 (460)
T ss_pred H-------------------------HHHhh-hhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhc-
Confidence 1 01111 111355566655555544333332333322221 1222222333331
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH---HH--hcCCCHHHHHHHHHHHHHHHhc---cCChhhHHHHHHH
Q 000201 1522 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI---KC--LQDSTRTVRSSAALALGKLSAL---STRVDPLVGDLLS 1593 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~---~~--l~d~~~~vR~~Aa~aLg~L~~~---~~~~~~~l~~L~~ 1593 (1866)
..+--..-+..|+.+-.--+..-..-+..|...+- .. ++-.+..+-.+-..|+..-+-+ +..-..++.-+..
T Consensus 164 tgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~ 243 (460)
T KOG2213|consen 164 TGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNK 243 (460)
T ss_pred cHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHh
Confidence 12211222222222110000000001111111111 11 2222344444444444322111 1111233333333
Q ss_pred Hhc--cC---ChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhcC
Q 000201 1594 SLQ--VS---DAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHD--DDHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1594 ~l~--~~---~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~--~~~vr~~aa~~l~~L~~~~~ 1660 (1866)
.+- .. ..+.+-..+++|.++.......-....+++|+++|...+.-. .++......+|+-.+.+.++
T Consensus 244 ~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 244 HIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred hhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 321 11 256788889999998877655444567788888888766544 35666667777766554443
No 304
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=54.20 E-value=41 Score=35.72 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=77.7
Q ss_pred HHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHh-CC
Q 000201 552 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLA-DR 627 (1866)
Q Consensus 552 ~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~-~~ 627 (1866)
+++..+.-|+..+....++.+.+.+..++..++...+.+....+...+..+..+.. ...+...++++.+...+. ..
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 68888888888776555567788888888888866555677778888887777542 223333467777777776 33
Q ss_pred CcHHHHHHHHHHHHHHHHHhCcCchhc-HHhHHHHHHHHcCC-CCHH-HHHHHHHHH
Q 000201 628 NSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSD-QVVA-VREAAECAA 681 (1866)
Q Consensus 628 ~~~~~r~~al~al~~L~~~l~~~~~p~-v~~llp~ll~~~~D-~~~~-VR~~a~~al 681 (1866)
++......++.++..-|.. +.-..+ ..+.++.|-..++. +++. +|-.|.-+|
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 3444444444444333321 111222 45677888888854 4444 565554433
No 305
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=54.05 E-value=2.6e+02 Score=37.40 Aligned_cols=80 Identities=5% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--h---hHHhHHHHH
Q 000201 705 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P---EIASLVPTL 779 (1866)
Q Consensus 705 ~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~---~i~~lv~~L 779 (1866)
.......-.-++++...+...|.+++......++..+..+|.+++++++..++.++-.|+..-.+ + .++.+++.+
T Consensus 66 ~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf 145 (819)
T KOG1877|consen 66 RRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKF 145 (819)
T ss_pred HhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHH
Confidence 34444445567788888888888887666667788888899999999999999999999854433 1 235667776
Q ss_pred HHhhC
Q 000201 780 LMGLT 784 (1866)
Q Consensus 780 ~~~l~ 784 (1866)
.+...
T Consensus 146 ~~l~h 150 (819)
T KOG1877|consen 146 SSLCH 150 (819)
T ss_pred HHHhh
Confidence 66554
No 306
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.89 E-value=8.2e+02 Score=34.04 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred HhHHHHHHhhc-----CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 694 KLVLPSLLKGL-----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 694 ~~llp~L~~~L-----~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
..++..++... .|-.+.+|..+++.||.+....|..+.. ...+..+.=.|.|.+..||..+.++|..+...
T Consensus 281 ~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 281 ESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 45566665554 5778999999999999999998887544 24455556679999999999999999999865
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.44 E-value=4.3e+02 Score=30.69 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=80.5
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-----------hHHhHHHHHHHhhCCCC-----hhHHHHHH
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----------EIASLVPTLLMGLTDPN-----DHTKYSLD 795 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----------~i~~lv~~L~~~l~d~~-----~~vr~al~ 795 (1866)
..++.+-+.+++.+..+. --..+.+.|..+...-.++ .+-..+|.++..+.+++ +..+.+.+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 344566666666666543 2344555566665443322 12346777777777666 34444444
Q ss_pred HHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHH
Q 000201 796 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 875 (1866)
Q Consensus 796 ~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~ 875 (1866)
.+.... .....+.++.++..+.+ .+......-..+++..+++.. +..|.-+++..+..++..+.+-+|..
T Consensus 138 ~La~~a--~~~~~~~La~il~~ya~---~~fr~~~dfl~~v~~~l~~~f-----~P~~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 138 ALAQVA--EAQGLPNLARILSSYAK---GRFRDKDDFLSQVVSYLREAF-----FPDHEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHHHH--HhCCCccHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhCCcHHHHHH
Confidence 444322 11122334434333332 222111122222333333322 11234456667777777777777877
Q ss_pred HHHHHHHHHhhcCCC--ChhhHHHHHHHhccc
Q 000201 876 AARAIGSLIRGMGEE--NFPDLVSWLLDALKS 905 (1866)
Q Consensus 876 a~~aL~~l~~~~g~~--~~~~l~~~L~~~L~~ 905 (1866)
....|..+.....-. .-.+++..+.+.+.+
T Consensus 208 ~L~iL~~ll~~~d~~~~~~~dlispllrlL~t 239 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSPHGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHHhccccCCCCcchHHHHHHHHHhCC
Confidence 777777777654322 334555555555544
No 308
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=51.65 E-value=9.5e+02 Score=34.39 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=90.8
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHH--HhcC---CCHhHHHHHHHHHHHHH
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK--VLVD---PIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~--~l~d---~~~~vR~~a~~aL~~l~ 884 (1866)
.+.-.+|.+...+......+...+...+..+...--+..+...+ +..+.. ...+ .+.+.-....+++..+.
T Consensus 804 ~l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~----lF~~~~~~~~~gs~~~~~el~q~~~k~~t~lI 879 (1364)
T KOG1823|consen 804 QLVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSE----LFKLLARKRHSGSPSTNFELCQDSFKGFTALI 879 (1364)
T ss_pred HHHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHHHhhcCCCcccHHHHHHHHHHHHHHH
Confidence 34455666666666666777777777666665421011111111 111111 1111 12344556778888888
Q ss_pred hhcCCC-ChhhHHHHHHHhcccCCCHHHHHHHHHHHH--HHHHHhChhHHHHHHHHHHHHhc-cCChhHHhHHHHHHHHh
Q 000201 885 RGMGEE-NFPDLVSWLLDALKSDNSNVERSGAAQGLS--EVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYL 960 (1866)
Q Consensus 885 ~~~g~~-~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~--~l~~~~g~~~l~~ll~~l~~~l~-~~~~~vR~~al~~l~~L 960 (1866)
...|.. ...+.+..+...+.++.....|.+.+-.+. -+.+......+.++|..+-+... ....+.|..+-..+-..
T Consensus 880 ~~~~s~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~r~i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~ 959 (1364)
T KOG1823|consen 880 AQVGSVKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVSRKIMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSF 959 (1364)
T ss_pred HHhcceeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 877763 345677777777777655556777666552 23333333345666666655432 23444555444433322
Q ss_pred hhhhchhhHhHHHHHHHHHHhhccCCChHHH
Q 000201 961 PRSLGVQFQNYLQQVLPAILDGLADENESVR 991 (1866)
Q Consensus 961 ~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR 991 (1866)
-. .+....|++...+..++.......+.+|
T Consensus 960 ~~-s~s~~~k~~~~~V~~l~~~~esg~esvr 989 (1364)
T KOG1823|consen 960 LG-SKSKLEKQMEFMVDNLLYEVESGRESVR 989 (1364)
T ss_pred Hh-hcchhhHHHHHHHHHhhhhhhcccchhc
Confidence 21 3344556666665555544444444444
No 309
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=50.48 E-value=26 Score=27.67 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHH
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECA 680 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~a 680 (1866)
.+...+...+.|+++.||++|.+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 677788888999999999999875
No 310
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=49.78 E-value=49 Score=31.41 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 000201 1092 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS--SSERRQVAGRALGEL 1149 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~--~~~~R~~A~~~L~~l 1149 (1866)
|.+|.+|..|..+++.++..++......-|.++..+.+.+.++ ....+--|+.+|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999998777655566677777777777744 345566666666655
No 311
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.47 E-value=1.1e+03 Score=34.65 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=65.7
Q ss_pred CchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh
Q 000201 650 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 650 ~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
.+++|+..++...-.++..+++.|+.-+......++..+..+.-..++..|+..+.+.+-.....|+.+|..++...++.
T Consensus 428 vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~ 507 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSE 507 (1426)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHH
Confidence 35678888888888888999999999999999999998876555778888888887666666678999999999887776
Q ss_pred HHhh
Q 000201 730 LSQC 733 (1866)
Q Consensus 730 ~~~~ 733 (1866)
+..+
T Consensus 508 l~~f 511 (1426)
T PF14631_consen 508 LQPF 511 (1426)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 312
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=49.44 E-value=85 Score=30.52 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=48.8
Q ss_pred cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccC
Q 000201 848 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSD 906 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~ 906 (1866)
..+.||.+.++..+...+.+-.++||..+.+.|.-+.+..++. ++..+++..++.+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4578899999999999999999999999999999999988865 4556777766666543
No 313
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.60 E-value=9.4e+02 Score=33.50 Aligned_cols=214 Identities=19% Similarity=0.219 Sum_probs=114.6
Q ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHhhHHhH--HHHHHhhc-----CCCChhhHHHHHHHHHHHHhhChh
Q 000201 657 QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGVKLV--LPSLLKGL-----EDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 657 ~llp~ll~~~~D~-~~~VR~~a~~al~~i~~~l~~~~v~~l--lp~L~~~L-----~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
.++..|. .+.|. ...+|.+|.-+.-.++..+....+... ....-..+ +...-|.|...+...........+
T Consensus 200 ~~is~Lt-amSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d 278 (1048)
T KOG2011|consen 200 DLISWLT-AMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQD 278 (1048)
T ss_pred HHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 4444444 45554 567888886666666654433211100 00000111 111223356666665555554444
Q ss_pred hHHhhhcchhHH-HhhhccCCChHHHHHHHHHHHHHHhhccchhH-HhHHHHHHHhhCCCChhHH-HHHHHHHhcccccc
Q 000201 729 QLSQCLPKIVPK-LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT 805 (1866)
Q Consensus 729 ~~~~~l~~iv~~-l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i-~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~ 805 (1866)
.+...+..|+.. ++.--.|..|.+|..|.+.|+......+.-.+ ..++..+--.+.|.+..|| .|+..|... +.+.
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L-~e~~ 357 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKL-YEKD 357 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHH-Hhcc
Confidence 444444444432 23345799999999999999998887754444 4566666667789888898 577766542 1122
Q ss_pred CCcchhhhHHHHHHH----hh-cCCCHHHHHHHHHHHHHHh--hhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHH
Q 000201 806 VDAPSLALLVPIVHR----GL-RERSAETKKKAAQIVGNMC--SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 878 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~----~l-~d~~~~vr~~a~~~l~~l~--~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~ 878 (1866)
.+.+.+..+..-+.. .. .|.+..||.........+. ..+++ ++ +..+..++-|.++.++.+|..
T Consensus 358 ~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d-~d--------i~~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 358 EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSD-KD--------ILIVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccCh-hH--------HHHHHHHHhccCcchHHHHHH
Confidence 233344444433332 22 4556677766555444332 22222 22 333456667777888777665
Q ss_pred HHH
Q 000201 879 AIG 881 (1866)
Q Consensus 879 aL~ 881 (1866)
.+-
T Consensus 429 fl~ 431 (1048)
T KOG2011|consen 429 FLY 431 (1048)
T ss_pred HHH
Confidence 543
No 314
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=47.81 E-value=1.5e+02 Score=31.33 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHhcc--------CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccC
Q 000201 916 AQGLSEVLAALGTVYFEHILPDIIRNCSH--------QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 985 (1866)
Q Consensus 916 ~~~L~~l~~~~g~~~l~~ll~~l~~~l~~--------~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d 985 (1866)
..++-.++-.+....+.++.-.+.++... ....-+.+...++..+...+..-|.||...+++.....|..
T Consensus 42 ~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 42 ISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666677777777777643 23333445667788888899999999999999887776653
No 315
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=47.55 E-value=6.9e+02 Score=32.43 Aligned_cols=305 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred hHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchh
Q 000201 692 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 771 (1866)
Q Consensus 692 ~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~ 771 (1866)
.++.-+..+-+++-++...++.+|+..+|-...+..+.. +..+-.+...++.++..+|..+.-.|+-.-....+.+
T Consensus 412 nvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~----dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~ 487 (878)
T KOG2005|consen 412 NVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC----DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREE 487 (878)
T ss_pred cchhhHHHHHHHhhcCCchhhhccceeeeeecccccccc----CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHH
Q ss_pred HHhHHHHHHHhhCCCChhHH-HHHHHHHh-ccccccCCcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCc
Q 000201 772 IASLVPTLLMGLTDPNDHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 772 i~~lv~~L~~~l~d~~~~vr-~al~~L~~-~~~~~~~~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
+.. .|...+.|.+.... .++..+.- ..|+...+......++..+...-+ +.....-+...--++.+.-.-++
T Consensus 488 V~~---lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe-- 562 (878)
T KOG2005|consen 488 VLE---LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQE-- 562 (878)
T ss_pred HHH---HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccc--
Q ss_pred chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh
Q 000201 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 928 (1866)
Q Consensus 849 ~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~ 928 (1866)
.+..+...+..-...+|..+-..+...+..-..+...---..+......+........-...||-..-+.|.
T Consensus 563 --------~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMge 634 (878)
T KOG2005|consen 563 --------SVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGE 634 (878)
T ss_pred --------hHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhh
Q ss_pred h-HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc
Q 000201 929 V-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1007 (1866)
Q Consensus 929 ~-~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~ 1007 (1866)
+ -.+-.+..+-..+.-..+.+|...--+++-++..-+.- .++..+-+...|.+.+|..++.-++..+...-..
T Consensus 635 eig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 635 EIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc------hHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Q ss_pred cchhchHHhHhc
Q 000201 1008 TSLPLLLPAVED 1019 (1866)
Q Consensus 1008 ~~i~~llp~l~~ 1019 (1866)
.-+..++..+.+
T Consensus 709 ARla~mLrqlaS 720 (878)
T KOG2005|consen 709 ARLAQMLRQLAS 720 (878)
T ss_pred HHHHHHHHHHHH
No 316
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.96 E-value=3.3e+02 Score=28.36 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=61.4
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhc
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+.+....+..|...+++.++.+...|+.++..+.++.+..+...+ ..++..|..++. ..++.|+..+...+......
T Consensus 36 ~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 36 DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 345677888888889999999999999999999998876654432 456666776665 56778999888888877765
Q ss_pred CCc
Q 000201 1421 VPK 1423 (1866)
Q Consensus 1421 ~~~ 1423 (1866)
...
T Consensus 116 f~~ 118 (142)
T cd03569 116 FRN 118 (142)
T ss_pred hCC
Confidence 544
No 317
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.90 E-value=2.7e+02 Score=28.85 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccC------CChHHHHHHHHHHHHHHH
Q 000201 932 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 932 ~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d------~~~~VR~~a~~al~~i~~ 1003 (1866)
.+.+..+...++++++++--.++.++..+...+|..|...+ ..++..+.+.+.. .++.|+...+..+..-..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455667778888999988999999999999999886544 2355555665542 457888877766655554
Q ss_pred hh
Q 000201 1004 HY 1005 (1866)
Q Consensus 1004 ~~ 1005 (1866)
.|
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 44
No 318
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=46.79 E-value=5.3e+02 Score=32.48 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--cCChhhHHHHHHHHhccCC-hhHHHH
Q 000201 1529 ILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL--STRVDPLVGDLLSSLQVSD-AGIREA 1605 (1866)
Q Consensus 1529 al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~--~~~~~~~l~~L~~~l~~~~-~~vr~~ 1605 (1866)
.|..+..+..+.|..+.||+|.+.+.+.. .++. ...+...+-.|+.- ...+...+|.|.-.+++++ ..++..
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q----~~p~-~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~ 256 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQ----LEPE-QYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILN 256 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcC----CCHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHH
Confidence 56667777788899999999988876543 2322 22333444444321 1336778888888887654 444544
Q ss_pred HHH
Q 000201 1606 ILT 1608 (1866)
Q Consensus 1606 ~l~ 1608 (1866)
+++
T Consensus 257 Ilk 259 (851)
T KOG3723|consen 257 ILK 259 (851)
T ss_pred HHH
Confidence 443
No 319
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=46.43 E-value=1.8e+02 Score=29.93 Aligned_cols=77 Identities=17% Similarity=0.053 Sum_probs=53.0
Q ss_pred cchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHh-hHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHhc
Q 000201 1159 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1159 ~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
...+..+.+.++++++.+...++..|..++.++|+.....+.. ..+..+.+.+. ..++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3455667777888899999999999999999888643322222 33333444444 3578999998888877776665
Q ss_pred h
Q 000201 1235 M 1235 (1866)
Q Consensus 1235 ~ 1235 (1866)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 320
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.39 E-value=2.9e+02 Score=28.35 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=59.3
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHh
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSD--STTVAAAWEALSRVVA 1419 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~d~~--~~v~~~A~~aL~~l~~ 1419 (1866)
..+....+..|...+++.++.+...|+.++..+.++.+..|...+ ..++..|..++.++. +.|+..+...+.....
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 455677888888999999999999999999999999887765443 456777777776543 2388887777777665
Q ss_pred cCC
Q 000201 1420 SVP 1422 (1866)
Q Consensus 1420 ~~~ 1422 (1866)
...
T Consensus 112 ~f~ 114 (133)
T smart00288 112 AFK 114 (133)
T ss_pred HHc
Confidence 543
No 321
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=44.63 E-value=8.5e+02 Score=31.83 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHHhhcCCCH------------HHHHHHHHHHHHHHhhcChhHHHHHHH
Q 000201 1603 REAILTALKGVLKHAGKS-VSSAVKIRVYSVLKDLVYHDDD------------HVRVSAASILGIMSQCMEDGQLADLLQ 1669 (1866)
Q Consensus 1603 r~~~l~aL~~vi~~~~~~-l~~~~~~~i~~~L~~~l~~~~~------------~vr~~aa~~l~~L~~~~~~~~~~~~l~ 1669 (1866)
-+-.+.+|-+|+...+.. +.+...+.+-+.+...+...|. .+-+..|++||.+...-=...-+.++.
T Consensus 9 ~yI~CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~ 88 (552)
T PF14222_consen 9 IYILCRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIA 88 (552)
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 455677888888877643 6777777777777766654433 233567888888876532222334555
Q ss_pred HHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhh----hcC-CChhHHHHHHHHhHHHHhhhhhc-
Q 000201 1670 ELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSS----LKD-EKFPLREASTKALGRLLLHQIQS- 1743 (1866)
Q Consensus 1670 ~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~----~~~-~~~~~r~~a~~alg~ll~~~~~~- 1743 (1866)
++-....... . ....+..+..-+++..-+....+.+++-.+++.+. .+. .+..++.+-.+.+..+|.-....
T Consensus 89 eL~~~~~~~~-~-~~~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~ 166 (552)
T PF14222_consen 89 ELEKLRKDSN-D-AESKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATA 166 (552)
T ss_pred HHHHhcccCC-c-hHHHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 4433222111 1 22334455555555443333333444444444332 333 46678888888888887644322
Q ss_pred -CCCChhhH----HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCc-chhhhhHh-hHHHHHHhhhccCcchhhhhHHH
Q 000201 1744 -GPANTTVV----VDILASVVSALHDDSSEVRRRALSALKSVAKANP-SAIMVHVA-LFGPALAECLKDGSTPVRLAAER 1816 (1866)
Q Consensus 1744 -~~~~~~~~----~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~-~~~~~~l~-~l~p~l~~~~~~~~~~vk~aae~ 1816 (1866)
...+.... ..+.+....+... +..-..+.-.+-.+-...| +.+..+.. .++..+..-+||+ ..|..+..
T Consensus 167 ~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~ 242 (552)
T PF14222_consen 167 TAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALE 242 (552)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHH
Confidence 11111222 3333444444433 2223334444444444444 44667777 5888888888888 77888887
Q ss_pred HHHHhh
Q 000201 1817 CAVHAF 1822 (1866)
Q Consensus 1817 a~~~l~ 1822 (1866)
|+..++
T Consensus 243 ~l~RLl 248 (552)
T PF14222_consen 243 CLSRLL 248 (552)
T ss_pred HHHHHH
Confidence 776664
No 322
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.23 E-value=23 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC
Q 000201 709 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD 747 (1866)
Q Consensus 709 w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D 747 (1866)
|.+|+.++..||.+.. +..++.|.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 7789999999998733 3445666667666
No 323
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.06 E-value=1.8e+02 Score=28.95 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH
Q 000201 929 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 974 (1866)
Q Consensus 929 ~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~ 974 (1866)
+....++..+...+.+.+|.+.--++.++.++...+|..|..++..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3456777788888888899999999999999999999988776643
No 324
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=41.54 E-value=82 Score=29.50 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=54.0
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 683 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~ 683 (1866)
+++..+...+.+..+...|+..+.|+..+....+..+..-+..++..+-....|.+..+-..|-+++..
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 455555555566667789999999999999988877777788888888888888888887777776543
No 325
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=40.04 E-value=1.1e+03 Score=31.95 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=21.0
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLG 648 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~ 648 (1866)
+...+.+.+...++...|+.++..+..+...-+
T Consensus 68 lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~ 100 (1697)
T KOG3687|consen 68 LWKAVADLIQPNRTAEARHAVLALLKRIVQTQG 100 (1697)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhh
Confidence 344445556666677888888777766665443
No 326
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=39.48 E-value=78 Score=30.77 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=47.5
Q ss_pred hhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHhcCC
Q 000201 1499 EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIA-LKPFLPQLQTTFIKCLQDS 1562 (1866)
Q Consensus 1499 ~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~-~~~~lp~L~~~l~~~l~d~ 1562 (1866)
++.+.||++.++.-+...+.. -..+||..++..|..+++.+|.. +..+...+++.|+..+.-.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTH-i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTH-ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHh-CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456788888887777777765 47899999999999999999876 4555566666666665543
No 327
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=39.45 E-value=5.5e+02 Score=28.14 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 618 ~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+.+.+.+.+++.|..|-+.+..+..+.. ..+...++..+.....|++..||.+..++|..+....+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 6677788888888888765554433332 35677888888888999999999999999999988643
No 328
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=39.30 E-value=8.2e+02 Score=30.10 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccCChhhHHH------HHHHHhccCChhHHHHHHHHHHHHHHh
Q 000201 1550 QLQTTFIKCLQDS-TRTVRSSAALALGKLSALSTRVDPLVG------DLLSSLQVSDAGIREAILTALKGVLKH 1616 (1866)
Q Consensus 1550 ~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~~~~~l~------~L~~~l~~~~~~vr~~~l~aL~~vi~~ 1616 (1866)
+++..+++.|+.+ ++.+-..|+.-+|.++...|+-..++. .++..+..+|++||+.++.|+..++.+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 5788888888877 477888899999999988887655554 367778889999999999999888754
No 329
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=6.9e+02 Score=31.54 Aligned_cols=168 Identities=19% Similarity=0.169 Sum_probs=94.7
Q ss_pred CccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCC
Q 000201 1463 ALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGI 1542 (1866)
Q Consensus 1463 ~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~ 1542 (1866)
+++-|+|++..-+.. -|+.--.-...+.-+|... ++.+..+..++...+...++-....+...+.+++..+-+-..|.
T Consensus 555 gl~~ilplm~~~lLk-~P~lc~~~~~lIty~ce~~-pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgs 632 (748)
T KOG4541|consen 555 GLHIILPLMTLELLK-YPKLCFDDVDLITYMCERA-PEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGS 632 (748)
T ss_pred eHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHHHh-HHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhcccc
Confidence 345567766643332 2333334445566677776 67777777777777775544322223445555555544433322
Q ss_pred C-CCC-------chH-HHHHHHHHH--hcCCCHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHhccCChhHHHHHHHHH
Q 000201 1543 A-LKP-------FLP-QLQTTFIKC--LQDSTRTVRSSAALALGKLSALSTR-VDPLVGDLLSSLQVSDAGIREAILTAL 1610 (1866)
Q Consensus 1543 ~-~~~-------~lp-~L~~~l~~~--l~d~~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~L~~~l~~~~~~vr~~~l~aL 1610 (1866)
. -+. |+. .+++++... +++-+.++-..|+.|+-.|+.++++ .+.++.+|++. .+++..++....|+
T Consensus 633 pankgrcTqnlafL~~efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~sk--q~np~~~qrLa~Af 710 (748)
T KOG4541|consen 633 PANKGRCTQNLAFLSREFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELISK--QANPNFKQRLANAF 710 (748)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhh--ccChHHHHHHHHHH
Confidence 1 111 332 245555443 3444778999999999999887665 35566666543 45677888888888
Q ss_pred HHHHHhcCcc-ccHHHHHHHHHHHH
Q 000201 1611 KGVLKHAGKS-VSSAVKIRVYSVLK 1634 (1866)
Q Consensus 1611 ~~vi~~~~~~-l~~~~~~~i~~~L~ 1634 (1866)
..+....... ++.....++.+.+.
T Consensus 711 ~~Lt~sn~~psldR~~~~~Frk~le 735 (748)
T KOG4541|consen 711 QVLTTSNQLPSLDRLNYQRFRKNLE 735 (748)
T ss_pred HHHhccCCCCCccHHHHHHHHHHHH
Confidence 8777655433 33333333333333
No 330
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=38.63 E-value=2.8e+02 Score=28.84 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=51.7
Q ss_pred HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHH-HhhhccC---CChHHHHHHHHHHHHHHhh
Q 000201 694 KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPK-LTEVLTD---THPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 694 ~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~-l~~~L~D---~~~~VR~aA~~aL~~l~~~ 766 (1866)
+..+..+.+.|. +.+.++..-|+.+|..++++|+..+...+ ..++.. |.+++.+ .+..|+..+...+...+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 444445555555 45788888899999999999987654321 244444 5555542 4568999998888888877
Q ss_pred ccc
Q 000201 767 IKN 769 (1866)
Q Consensus 767 i~~ 769 (1866)
+++
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 653
No 331
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.51 E-value=4.9e+02 Score=28.69 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--ccccchHHHHhcccCCCC-----ccchhhHHHHHHHHHHhhc
Q 000201 1120 MPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLPSIIPILSRGLKDPS-----ASRRQGVCIGLSEVMASAG 1192 (1866)
Q Consensus 1120 l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l~~llp~L~~~L~d~~-----~~vr~~a~~~L~~li~~~~ 1192 (1866)
+..++..+++...++-..+|..|..++..+...... +..|.. +.+...+..+. +..-...+..+..++.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~-~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~--- 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHR-EELQDIFPSESEASLNWSSSSEYFPRLVKLLD--- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcH-HHHHHHcccccccccccCCHHHHHHHHHHHhc---
Confidence 344455555555566678999999999999843222 123322 33333333221 2223333333333321
Q ss_pred hhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHH--HhchhhHhhHHHHHHHhccC
Q 000201 1193 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK--SAGMQAIDEIVPTLLHALED 1251 (1866)
Q Consensus 1193 ~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~--~~g~~~~~~ilp~Ll~~L~~ 1251 (1866)
+..|...++..+........+.+...+..++-.... .........++..++..+++
T Consensus 81 ---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 81 ---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred ---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 234556677776666666677777777777666654 23344555566666655543
No 332
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.69 E-value=7.4e+02 Score=29.14 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCChh-HHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 933 HILPDIIRNCSHQRAS-VRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 933 ~ll~~l~~~l~~~~~~-vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
+++..++..++..++. .-.-|+.=++.+.+..|+...-.. -..-..++..+++++++||..|++|...++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3455666666665544 122234444555555543221111 1244567888899999999999998887764
No 333
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.09 E-value=22 Score=24.90 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHHHHHHhh
Q 000201 752 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 783 (1866)
Q Consensus 752 VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l 783 (1866)
||.+|.++|+.++. ...+|.|++.+
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHh
Confidence 78999999998875 33455555544
No 334
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=34.56 E-value=9.3e+02 Score=29.39 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=76.5
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc--Cc-hhcHHhHHHHHHHHcCCC--------------CHHHHHHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGR--LF-EPYVIQMLPLLLVAFSDQ--------------VVAVREAA 677 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~--~~-~p~v~~llp~ll~~~~D~--------------~~~VR~~a 677 (1866)
..+..+.+.++.+.||..-.-. +..|+..+.. .| ...+..+...+.+...|. ..++....
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~V---L~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~ 217 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYV---LVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCV 217 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHH---HHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHH
Confidence 3455666677777788765433 3344443331 11 122555555555554432 33555566
Q ss_pred HHHHHHHHHhh---cHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc
Q 000201 678 ECAARAMMSQL---SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 746 (1866)
Q Consensus 678 ~~al~~i~~~l---~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~ 746 (1866)
..++..++..- +...-+.++..+..++.+ ++-..++.+|.-.+...|..+.+.++.|+..+.+...
T Consensus 218 ~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 218 FPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 66666666533 333346788888888876 3456678888877887888888888888776655444
No 335
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.91 E-value=2.2e+02 Score=29.61 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHH
Q 000201 1549 PQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIR 1628 (1866)
Q Consensus 1549 p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~ 1628 (1866)
+++...+...|.+++.+|+..|..|+...-. +.+.||-..|-..+.+ ...|..+..- .+......+.+..++.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l~pY~d~L~~Lldd--~~frdeL~~f---~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYLTPYKDNLENLLDD--KTFRDELTTF---NLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHcCc--chHHHHHHhh---cccCCcCCCCHHHHhH
Confidence 6777888899999999999999999987632 5667777677666664 3445443321 1122223366777888
Q ss_pred HHHHHHHhh
Q 000201 1629 VYSVLKDLV 1637 (1866)
Q Consensus 1629 i~~~L~~~l 1637 (1866)
+++++...+
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 877776543
No 336
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=33.21 E-value=1.2e+03 Score=30.14 Aligned_cols=228 Identities=12% Similarity=0.153 Sum_probs=111.7
Q ss_pred HHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCc--------hhHHHHHHHHhhhcCCccCC
Q 000201 296 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPE--------KSVAEAAEDIWDRYGYDFGT 367 (1866)
Q Consensus 296 ~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~w~~~~~~~~~ 367 (1866)
+....+....++..-.++|.+-|.++. +.| ..|...=.+-.+... .-.-++-...|.-.+.+.+.
T Consensus 16 lDkVVttfyqg~g~~q~qAq~iLtkFq-----~~P--daWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~ 88 (1053)
T COG5101 16 LDKVVTTFYQGDGRKQEQAQRILTKFQ-----ELP--DAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQ 88 (1053)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHH-----hCc--hHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHH
Confidence 445555666677666777777776654 121 112211111111111 11234556778765544554
Q ss_pred Ch-hhhhhhcC--CCCHHHHHHHHHHHHHH-------H-HhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHH
Q 000201 368 DY-SGLFKALS--HSNYNVRLAAAEALATA-------L-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 436 (1866)
Q Consensus 368 ~~-~~ll~~l~--~~~~~vr~~aa~~l~~~-------~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~ 436 (1866)
.+ .+.++... +.|..+|+.--..+... . ..||.-|++.+..+.+.... +.++=..-..
T Consensus 89 GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~-----------s~~vCeNnmi 157 (1053)
T COG5101 89 GIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI-----------SMEVCENNMI 157 (1053)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc-----------hHHHHhccHH
Confidence 44 33443222 34566777666555443 2 45888888888888753200 1122222233
Q ss_pred HHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHH
Q 000201 437 ALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 516 (1866)
Q Consensus 437 ~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~ 516 (1866)
.|+.+.+ ++|.|=-.. -..++.. .+++.-....+.++..|...|+...+ ...-++
T Consensus 158 vLklLsE--------EvFdfSaeq-----mTq~k~~-------~LkNqm~~EF~qIF~lc~qiLE~~~~-----~SLi~A 212 (1053)
T COG5101 158 VLKLLSE--------EVFDFSAEQ-----MTQVKKR-------LLKNQMKIEFPQIFGLCKQILEYSRD-----ESLIEA 212 (1053)
T ss_pred HHHHhHH--------HHHhccHHH-----HHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHhcCC-----hHHHHH
Confidence 3333322 233332111 1122222 22222233457788888887776321 345455
Q ss_pred HHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHh
Q 000201 517 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 567 (1866)
Q Consensus 517 av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~ 567 (1866)
..+.+.+-+..++-+--..-.+++.+...+.+.. +++.....|+..++..
T Consensus 213 TLesllrfl~wiPl~yIfeTnIieLv~~~f~s~p-d~r~~tl~CLtEi~~L 262 (1053)
T COG5101 213 TLESLLRFLEWIPLDYIFETNIIELVLEHFNSMP-DTRVATLSCLTEIVDL 262 (1053)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHhh
Confidence 5555544444332221112357777777776533 6788888898766543
No 337
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=33.21 E-value=3.8e+02 Score=32.25 Aligned_cols=94 Identities=11% Similarity=0.154 Sum_probs=65.8
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcC
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
++-...|..+++++.+.++.+...|+.+++.+..+++..+...+ .++...|..++. ...+.|++.....+.......
T Consensus 41 ~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 41 DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 56678888899999999999999999999999888876654322 344555555665 566777777776766666655
Q ss_pred CcchhhhhHHHHHHHHh
Q 000201 1422 PKEVQPSYIKVIRDAIS 1438 (1866)
Q Consensus 1422 ~~~~l~~l~~~l~~~l~ 1438 (1866)
.++---+++..+...+.
T Consensus 121 K~Dp~lsLi~~l~~klk 137 (462)
T KOG2199|consen 121 KKDPSLSLISALYKKLK 137 (462)
T ss_pred ccCcchhHHHHHHHHHH
Confidence 55544455665555443
No 338
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=32.35 E-value=3.8e+02 Score=29.51 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=28.5
Q ss_pred hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchH
Q 000201 1505 FVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLP 1549 (1866)
Q Consensus 1505 ~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp 1549 (1866)
.+..+++.+++...++ -+.+|..|..++..++ ..+..-.|++|
T Consensus 4 ~~~~~~~~llrqa~EK-iDrvR~~A~~~l~~ll-~~~~~~~~~ip 46 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEK-IDRVREVAGKCLQRLL-HSQDPTIPHIP 46 (193)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-cCCCccccCCC
Confidence 3455666677776666 4679999999999998 44333234444
No 339
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=31.87 E-value=7.6e+02 Score=27.56 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCcHHHHHHH-HHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 617 AATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~a-l~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
++.+...+...++|..-... -..++.+... -....+.+.....+++.=+|.+|.-+.-...... ....
T Consensus 82 ~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~--------~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~---~~~~ 150 (208)
T cd07064 82 LPLLEELITTKSWWDTVDSLAKVVGGILLAD--------YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT---DTDL 150 (208)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC--------ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc---CHHH
Confidence 45555666666677654432 1111221111 1123456667777888888887765543333322 2344
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
++..+...+.++.+-++++.-..|..++...|+.+.
T Consensus 151 l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 151 LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 555566667788888888888888888877666543
No 340
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=31.32 E-value=6.6e+02 Score=26.67 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCh------hHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHHHh
Q 000201 1711 LDRLKSSLKDEKF------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS--SEVRRRALSALKSVAK 1782 (1866)
Q Consensus 1711 ~~~l~~~~~~~~~------~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~vR~~a~~~l~~~a~ 1782 (1866)
+..+...+.+... .+=..+..|+-.|..|+. -+=+..-..|+..++...+.+. ..+-+.|+..+-.++.
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~---vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI---VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc---CchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Q ss_pred hCcchhhhhHhhH-HHHHHhhhccCcchhhhhHHHHHHHhhcccccchhHHHHHHHhhhhhhhhh
Q 000201 1783 ANPSAIMVHVALF-GPALAECLKDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 1846 (1866)
Q Consensus 1783 ~~~~~~~~~l~~l-~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1846 (1866)
+.+....-.-..+ ++.|...++..+..+...|..-+-++|.-.+++++ +.+.+++..-.-|..
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r-~~i~~~l~~k~~R~~ 153 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR-KEIAETLSQKQIRQV 153 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHHH
No 341
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.47 E-value=1.4e+03 Score=30.31 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=69.7
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
.++..|.+...++-..+|.-++..+..+..+-|++-. .++-.+++-+.|++..+...|...|..+... .|.+..
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~--HPnMK~ 377 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAK--HPNMKI 377 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhh--CCccee
Confidence 3444444555566678899999999988888887754 3445567788999998888888888877643 344422
Q ss_pred -HHHHHHHhhCCCChhHH---HHHHHHHhccccccC
Q 000201 775 -LVPTLLMGLTDPNDHTK---YSLDILLQTTFVNTV 806 (1866)
Q Consensus 775 -lv~~L~~~l~d~~~~vr---~al~~L~~~~~~~~~ 806 (1866)
++..+-+.+-.|+-..| .++..|.++.+.|..
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke 413 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKE 413 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccch
Confidence 34445555556665555 355666666666643
No 342
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=30.20 E-value=1.2e+02 Score=27.37 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhh-hCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Q 000201 591 ERRGAAFGLAGVVKG-FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK 646 (1866)
Q Consensus 591 ~R~~A~~~L~~l~~~-~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~ 646 (1866)
..|+|.++++.+... .|..-+...++++.+.+..+....+..|-.+..+++.++..
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 578999999998875 56666666789999999999888899999999999988864
No 343
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=28.71 E-value=2.5e+02 Score=27.28 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhChhh--HHhhhcchhHHHhhhc--cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHH
Q 000201 712 KQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLL 780 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~~~--~~~~l~~iv~~l~~~L--~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~ 780 (1866)
|...+.+|+.+++..+.. ....+.. +|.++..+ .|.+|-+|.-|..|+..+++ .+++-+.++..|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e--~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCE--GNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHh--CCHHHHHHHHhcc
Confidence 566788899999876643 2223334 66666644 57789999999999999986 3555566555553
No 344
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=28.06 E-value=3.3e+02 Score=27.27 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhccc
Q 000201 1750 VVVDILASVVSALH-DDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLT 1825 (1866)
Q Consensus 1750 ~~~~~l~~l~~~l~-~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~ 1825 (1866)
.+..+++.+..++. ...+|.|-.+...+..++...| .-.+.+..++..+.+....... ...+.-|+..+.+-.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 46678888889988 8899999999999999998654 2234456666666665544433 566777788887665
No 345
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.99 E-value=2.2e+03 Score=31.59 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=79.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhcH----hhHHhHHHHHH---hhcC-------CCChhh--HHHHHHHHHHHHhhChhh
Q 000201 666 FSDQVVAVREAAECAARAMMSQLSA----QGVKLVLPSLL---KGLE-------DKAWRT--KQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 666 ~~D~~~~VR~~a~~al~~i~~~l~~----~~v~~llp~L~---~~L~-------~~~w~~--r~~a~~~L~~l~~~~~~~ 729 (1866)
..|....||..+.+.+-.++...+. +.++.++..++ ..+. ..+|-. -..|+.++-.+....-++
T Consensus 1183 ~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~ 1262 (1514)
T KOG0929|consen 1183 INDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQ 1262 (1514)
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999998888875544 33344444222 2221 124743 345777777777766677
Q ss_pred HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc----chhHHhHHHHHHHhh
Q 000201 730 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGL 783 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~----~~~i~~lv~~L~~~l 783 (1866)
+...|+.++..+..+.+.++..+-.....||.++....+ +..+.+++..+.++.
T Consensus 1263 l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1263 LNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 777788888888888888888888889999988876544 345566655555443
No 346
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=27.52 E-value=1.1e+02 Score=28.92 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhccCcchhhhhHHHHHHHhhccccc
Q 000201 1769 VRRRALSALKSVAKANPSAIMVHVALFGPALAECLKDGSTPVRLAAERCAVHAFQLTRG 1827 (1866)
Q Consensus 1769 vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~~~~~vk~aae~a~~~l~~~~~~ 1827 (1866)
.|-.+..+++.+....|..+-+.++.++..|-+...+ ..+++..+.+|+...-+.+++
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D 62 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQD 62 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcc
Confidence 4567888999999999999988999998888888775 789999999999999888865
No 347
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=2e+03 Score=31.89 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=72.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHH-hHHHHHHHHHHhhc---CC-C------H--HHHHHHHHHHHHHHH
Q 000201 1085 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNTLISSLA---SS-S------S--ERRQVAGRALGELVR 1151 (1866)
Q Consensus 1085 ~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~-~l~~l~~~L~~~l~---~~-~------~--~~R~~A~~~L~~lv~ 1151 (1866)
.+.....|....||..+++++-.+....+..|.+ +...++..++.-+. .+ + | ..-..|.+.+..+..
T Consensus 1178 ~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~ 1257 (1514)
T KOG0929|consen 1178 QLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFT 1257 (1514)
T ss_pred hhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333345778899999999999888877766544 44555553332222 11 1 1 111234444444444
Q ss_pred Hhcc---ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhh
Q 000201 1152 KLGE---RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1211 (1866)
Q Consensus 1152 ~~~~---~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1211 (1866)
..-. ..+|.++..+..+.+.++...-.....+|..++...+...-...|++++..+..+.
T Consensus 1258 ~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1258 QFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 3332 35677777777777766666555555666666665554444556677776665544
No 348
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=27.25 E-value=6.9e+02 Score=26.69 Aligned_cols=95 Identities=16% Similarity=0.262 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhCcCch------hcH----HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---hHHhH
Q 000201 630 AKRREGALLAFECLCEKLGRLFE------PYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLV 696 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~~~~~------p~v----~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~v~~l 696 (1866)
...|..++..+..+.+..|..|. ++. ..+.|.++.....++..+-..+...+..+...+..+ +.+.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888887775555 222 257888888877777888888888888888766553 34667
Q ss_pred HHHHHh-hcCCC--ChhhHHHHHHHHHHHHh
Q 000201 697 LPSLLK-GLEDK--AWRTKQSSVQLLGAMAY 724 (1866)
Q Consensus 697 lp~L~~-~L~~~--~w~~r~~a~~~L~~l~~ 724 (1866)
++.+.. .++++ .+..|..+++.+..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 777666 44433 34588889999888875
No 349
>PF14961 BROMI: Broad-minded protein
Probab=27.17 E-value=2e+03 Score=30.93 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhh
Q 000201 1684 HGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740 (1866)
Q Consensus 1684 ~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~ 1740 (1866)
+....++..+++..|..++..+.|..+...+...+.|+++.++..+.+-.++++...
T Consensus 177 evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 177 EVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 344557778888889999999999999999999999999999999998888877654
No 350
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.13 E-value=7.8e+02 Score=26.15 Aligned_cols=118 Identities=24% Similarity=0.220 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccccccch--HHHHhcccCCCCccch
Q 000201 1100 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI--IPILSRGLKDPSASRR 1177 (1866)
Q Consensus 1100 ~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~l--lp~L~~~L~d~~~~vr 1177 (1866)
-+.++|..+....+..-.+++..+...++..-.++. ..-..+|+.+++..+-.++... +..+.+.+..-..++-
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~----~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a 112 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPS----SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVA 112 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS------HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 445555555554444444566666666554333211 1246899999987654332211 1112222222233344
Q ss_pred hhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHH
Q 000201 1178 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1226 (1866)
Q Consensus 1178 ~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al 1226 (1866)
.+...++.-++.. + ...-+.++-.+++++-..+.+.|..|..+|
T Consensus 113 ~~ll~Al~PLi~~-s----~~lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 113 IGLLRALLPLIKF-S----PSLRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHTT------HHHHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-C----HHHHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 4444444444322 1 234477888899999999999999988765
No 351
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.09 E-value=92 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMC 841 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~ 841 (1866)
.+|.+.+.+.+.++++++.++.++.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777788888999999999999885
No 352
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.75 E-value=1.8e+03 Score=30.19 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=63.5
Q ss_pred chhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhcc--chhc----HHHHHHHHHhccCCCchhHHHHHHHHHHHHHh
Q 000201 1305 LNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVI--DEEG----VESLVSELLKGVGDNQASIRRSSAYLIGYFYK 1378 (1866)
Q Consensus 1305 l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~--~~~~----~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~ 1378 (1866)
...+.+.+...+...+...+...-...+.++..+..-. .... ...-....-. .-..++......++.+..
T Consensus 435 ~~~~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~----~~~~~~~~~~~il~rls~ 510 (727)
T PF12726_consen 435 VSRISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNK----SLGQITDLISQILERLSD 510 (727)
T ss_pred chhhhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 33566777777777777666666666666666554311 1111 1111111100 012234455556666655
Q ss_pred hccchhhhhHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCC
Q 000201 1379 NSKLYLVDEAP--NMISTLIVLLSDSDSTTVAAAWEALSRVVASVP 1422 (1866)
Q Consensus 1379 ~~~~~~~~~~~--~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~ 1422 (1866)
..+..+...+. .....+..++-.++.++.++|.+.+..+....+
T Consensus 511 ~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 511 FDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred CCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 44444433332 556667777778888999999999988876433
No 353
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=26.31 E-value=2.1e+03 Score=30.93 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=62.7
Q ss_pred HHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCC
Q 000201 1667 LLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPA 1746 (1866)
Q Consensus 1667 ~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~ 1746 (1866)
+++..+.+....+.....+...++..++-..+...+ -...++.+..-.+.+++.++|..|+.-+..+=......+.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~---~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~~s~- 579 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPC---PFWELLNLVLFKLGDESSEIRSKAMQLLRALEERFFSSSG- 579 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCC---CHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhcccc-
Confidence 555566665555544444555567666654432211 2346888888889999999999999877766433221110
Q ss_pred ChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHhhCcchh
Q 000201 1747 NTTVVVDILASVVSALHDDSSEVRRRALSALK-SVAKANPSAI 1788 (1866)
Q Consensus 1747 ~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~-~~a~~~~~~~ 1788 (1866)
......+...+.++.+++-..+..-+. .+|+.+|+..
T Consensus 580 -----~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs 617 (1120)
T PF14228_consen 580 -----SEKSGDFRESISSKLPAVYKKAQFELSKRLAKQHPELS 617 (1120)
T ss_pred -----cccccceehhccCCcHHHHHHHHHHHHHHHHHhChhhH
Confidence 001122223444555555555553333 5666665543
No 354
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=25.85 E-value=1.6e+03 Score=29.33 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHHHHHhccccccchHHHHhcccC-CCCccchhhHHHHHHHHHHhhchhhHH-hhHhhHHHHHHHhhcCCcHHHHHHH
Q 000201 1145 ALGELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLL-SFMDELIPTIRTALCDSILEVRESA 1222 (1866)
Q Consensus 1145 ~L~~lv~~~~~~~l~~llp~L~~~L~-d~~~~vr~~a~~~L~~li~~~~~~~l~-~~l~~ll~~l~~~L~d~~~~vr~~A 1222 (1866)
.++.+...+.+..+.+++-.+...+. .+...+|..++..++.+....-+.... +..+.+...+...+.|.+.-+...|
T Consensus 464 l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~A 543 (559)
T PF14868_consen 464 LLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHA 543 (559)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHH
Confidence 34445555555555666655655553 334447777777777665433333222 3445555556667899999999999
Q ss_pred HHHHHHHHHH
Q 000201 1223 GLAFSTLFKS 1232 (1866)
Q Consensus 1223 ~~al~~l~~~ 1232 (1866)
.+||+.+++.
T Consensus 544 LeAF~~FAe~ 553 (559)
T PF14868_consen 544 LEAFGQFAER 553 (559)
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 355
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.33 E-value=9.1e+02 Score=26.34 Aligned_cols=78 Identities=26% Similarity=0.245 Sum_probs=63.1
Q ss_pred HHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhh
Q 000201 1712 DRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVH 1791 (1866)
Q Consensus 1712 ~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~ 1791 (1866)
+.+..-+.|++.-.|++|..++..+.... .....++..+...+.|++.-||++...+|+.++...|+.+.++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--------TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 67778889999999999888776665541 1457788888888888999999999999999999999988877
Q ss_pred HhhHHH
Q 000201 1792 VALFGP 1797 (1866)
Q Consensus 1792 l~~l~p 1797 (1866)
+.....
T Consensus 180 l~~~~~ 185 (197)
T cd06561 180 LEKNGL 185 (197)
T ss_pred HHHHHH
Confidence 765543
No 356
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.05 E-value=7.9e+02 Score=25.51 Aligned_cols=74 Identities=8% Similarity=0.144 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhc-cCChhHHhHHHHHHHHhhhhhchhhHhHHH--HHHHH-HHhhccC---CChHHHHHHHHHHHHHHHh
Q 000201 932 EHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYLQ--QVLPA-ILDGLAD---ENESVRDAALGAGHVLVEH 1004 (1866)
Q Consensus 932 ~~ll~~l~~~l~-~~~~~vR~~al~~l~~L~~~~g~~f~~~l~--~il~~-ll~~l~d---~~~~VR~~a~~al~~i~~~ 1004 (1866)
.+.+..+.+.+. +.++.+-..++.++..+...+|..|...+. .++.. +.+.+.. ....|+..++..+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 344555666665 357888778899999999999998865442 34443 4555442 3457777666655554444
Q ss_pred h
Q 000201 1005 Y 1005 (1866)
Q Consensus 1005 ~ 1005 (1866)
+
T Consensus 117 f 117 (141)
T cd03565 117 F 117 (141)
T ss_pred h
Confidence 4
No 357
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=24.40 E-value=5.2e+02 Score=29.73 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH--hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 693 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~--~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v 693 (1866)
+.|+|....+...-+.-|-..+-.+|.+...-....-.|+. +++|..+..+.-.+.--+..|.-.+..|.. .+.|.
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~--dd~GL 173 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL--DDVGL 173 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH--SHHHH
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc--chhHH
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-----
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK----- 768 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~----- 768 (1866)
..+.. ....-.+....|+.|.....++.+..+-+-+=....-|.| +|+.|.+-.++|....+.-.
T Consensus 174 ~yiC~---------t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~~LP~~Lrd~~f~~~l 243 (262)
T PF04078_consen 174 NYICQ---------TAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQCLPDQLRDGTFSNIL 243 (262)
T ss_dssp HHHTS---------SHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHHHS-GGGTSSTTTTGG
T ss_pred HHHhc---------CHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHHhCcHHHhcHHHHHHH
Q ss_pred --chhHHhHHHHHHHhhCC
Q 000201 769 --NPEIASLVPTLLMGLTD 785 (1866)
Q Consensus 769 --~~~i~~lv~~L~~~l~d 785 (1866)
++..+..+..|+..+++
T Consensus 244 ~~D~~~k~~l~qLl~nl~~ 262 (262)
T PF04078_consen 244 KDDPSTKRWLQQLLSNLND 262 (262)
T ss_dssp CS-HHHHHHHHHHHHHTT-
T ss_pred hcCHHHHHHHHHHHHHhcC
No 358
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.94 E-value=6.5e+02 Score=25.16 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhc-cCC-hhHHHHHHHHHHHHHHhc
Q 000201 1546 PFLPQLQTTFIKCLQ-DSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQ-VSD-AGIREAILTALKGVLKHA 1617 (1866)
Q Consensus 1546 ~~lp~L~~~l~~~l~-d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~-~~~-~~vr~~~l~aL~~vi~~~ 1617 (1866)
.+++.++|.+.+.+. ....+.|..+.-.++.|..-.+--+..+..+++.+- ... .......+-++..+.++-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 367899999999999 568899999999999997655555566666666552 222 122244555666665443
No 359
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=23.76 E-value=1.4e+03 Score=28.11 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCC-hhHHHHHHHHhHHHHhhhhhcCCCChhhHHH--HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q 000201 1708 LSILDRLKSSLKDEK-FPLREASTKALGRLLLHQIQSGPANTTVVVD--ILASVVSALHDDSSEVRRRALSALKSVAK 1782 (1866)
Q Consensus 1708 ~~~~~~l~~~~~~~~-~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~vR~~a~~~l~~~a~ 1782 (1866)
-+++..+...+...+ |.+=..|..-+|.++.+.... ...+.+ -=..++..+++++++||-.|+.++..+--
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g----k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG----KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH----hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 356777777776555 656666777788888775421 112221 22468888999999999999999986643
No 360
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=23.73 E-value=4.2e+02 Score=31.67 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhc--chhHHHhhh---ccCCChHHHHHHHHHHHHHHh
Q 000201 696 VLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEV---LTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 696 llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~~l~~~---L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+...+...+. +.+.|++.+-+.+|..+...+|..+...|. ..++.|+.. -.+.++-||.-|+--||...+
T Consensus 156 v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 156 VSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 3334444444 567999999999999999999887665443 245555553 234566777777776766554
No 361
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.52 E-value=1e+03 Score=31.94 Aligned_cols=150 Identities=23% Similarity=0.279 Sum_probs=83.3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhcCh--h
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDL-VYHDDDHVRVSAASILGIMSQCMED--G 1662 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~-l~~~~~~vr~~aa~~l~~L~~~~~~--~ 1662 (1866)
.-+.+|+..+.+++..+.+.+-..+.+.+...... .++..+.+. +...+.. +..+ |+..-.+ .
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~~----~~~i---l~~~~~P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQR----ALEI---LVGVQEPHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcHH----HHHH---HHhcCCccHH
Confidence 34678888888888777777777777776653321 223333332 2222222 2222 2222222 2
Q ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCccc---CCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhh
Q 000201 1663 QLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAIS---MSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1663 ~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
.+...+...+ ... ..|..++..|+.+++..|..+. ..+++.. ++.....|.++.+-..|+.++-.++-+
T Consensus 70 ~~~~~l~~~~---~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~---LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 HLFDKLNDYF---VKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKS---LLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHHH---cCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHH---HHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 2333343333 222 3477777888999999888764 2233333 333334567788888999999988887
Q ss_pred hhhcCCCChhhHHHHHHHHHh
Q 000201 1740 QIQSGPANTTVVVDILASVVS 1760 (1866)
Q Consensus 1740 ~~~~~~~~~~~~~~~l~~l~~ 1760 (1866)
....-. .++..++..+..
T Consensus 142 ip~~l~---~~L~~Lf~If~R 159 (668)
T PF04388_consen 142 IPSSLG---PHLPDLFNIFGR 159 (668)
T ss_pred ccchhh---HHHHHHHHHHHH
Confidence 654321 355555554443
No 362
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=23.34 E-value=1.7e+02 Score=31.49 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
..+|.++...+-.++.....+..+|.......|.+- ++.+..-. +++.||.-|+++|..+. +.++..
T Consensus 39 ~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-------LeLL~~~f--~d~~VR~yAV~~L~~~s----d~eL~~ 105 (171)
T cd00872 39 QALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-------LELLDCNF--PDEHVREFAVRCLEKLS----DDELLQ 105 (171)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-------HHHCCCcC--CCHHHHHHHHHHHHhCC----HHHHHH
Confidence 345555554444444444455555544433333321 11122222 34899999999998754 567888
Q ss_pred HHHHHHHhhCC
Q 000201 775 LVPTLLMGLTD 785 (1866)
Q Consensus 775 lv~~L~~~l~d 785 (1866)
++|.|.+++.-
T Consensus 106 yL~QLVQaLKy 116 (171)
T cd00872 106 YLLQLVQVLKY 116 (171)
T ss_pred HHHHHHHHHHc
Confidence 88888888753
No 363
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=23.20 E-value=8.2e+02 Score=28.31 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=77.7
Q ss_pred ChhhHHHHHHHHHHHHhhChhh--------HHhhhcchhHHHhhh-ccCCChHHHHHHHHHHHHHHhhcc---chhH---
Q 000201 708 AWRTKQSSVQLLGAMAYCAPQQ--------LSQCLPKIVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIK---NPEI--- 772 (1866)
Q Consensus 708 ~w~~r~~a~~~L~~l~~~~~~~--------~~~~l~~iv~~l~~~-L~D~~~~VR~aA~~aL~~l~~~i~---~~~i--- 772 (1866)
.|+.-+.+..+|+.++...+-. -...+..+-..++.. ++=.|.-+-..+..++..++..+- ++.+
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 3777777777888777543210 112233333334433 333455555666666666665543 3333
Q ss_pred -HhHHHHHHHhhCCC-Ch---hHH--HHH----HHHHhccccccCCcchhhhHHHHHHHhhcCCC--------HHHHHHH
Q 000201 773 -ASLVPTLLMGLTDP-ND---HTK--YSL----DILLQTTFVNTVDAPSLALLVPIVHRGLRERS--------AETKKKA 833 (1866)
Q Consensus 773 -~~lv~~L~~~l~d~-~~---~vr--~al----~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~--------~~vr~~a 833 (1866)
...+..+++.+..+ .. .+| .++ ..+..... ....+.+...+..|++..+.+. ..-+.+|
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~--~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEP--SNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCC--CcchhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 33445555555555 22 244 222 22222111 1111455555666665544322 2456677
Q ss_pred HHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCH
Q 000201 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 870 (1866)
Q Consensus 834 ~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~ 870 (1866)
..++..+..--.=...+.+|+...+..-.+.+.++.|
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~W 254 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDW 254 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 7777666542111134556666655555555555544
No 364
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=22.73 E-value=1.5e+03 Score=27.85 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCc
Q 000201 1387 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPK 1423 (1866)
Q Consensus 1387 ~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~ 1423 (1866)
|+.++...+-.-+...+.+.....+.+++.+++..+.
T Consensus 66 Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~ 102 (373)
T PF14911_consen 66 YFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSP 102 (373)
T ss_pred HHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcch
Confidence 4444444444434555677778888888888886653
No 365
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=22.64 E-value=1.7e+02 Score=30.98 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000201 78 ARELLLNEEASIREKVQGVQRNLSLMLSALGEMAI 112 (1866)
Q Consensus 78 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1866)
..+.++++|.+||++++.+...+....+.|+.+..
T Consensus 10 q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~ 44 (226)
T KOG3067|consen 10 QLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQ 44 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778999999999999999999988888887654
No 366
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=22.62 E-value=7.1e+02 Score=26.70 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCh------hHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000201 1708 LSILDRLKSSLKDEKF------PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVA 1781 (1866)
Q Consensus 1708 ~~~~~~l~~~~~~~~~------~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a 1781 (1866)
.++-|.++.++..+++ -+|+.+......++.+.... =.-|...+..+..+.+ .-|.+....+.
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~--------W~eL~d~Ils~~~~e~---~kA~~IF~~L~ 70 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGG--------WDELSDCILSLSENEP---VKAFHIFICLP 70 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCC--------chhHHHHHHHhhccch---HHHHHHHHhCC
Q ss_pred -hhCcchhhhhHhhHHHHHHhhhccCc-chhh---hhHHHHHHHhhcccccchhHHHHHHHhhhh
Q 000201 1782 -KANPSAIMVHVALFGPALAECLKDGS-TPVR---LAAERCAVHAFQLTRGSEYIQGAQKFITGL 1841 (1866)
Q Consensus 1782 -~~~~~~~~~~l~~l~p~l~~~~~~~~-~~vk---~aae~a~~~l~~~~~~~~~~~~~~~~~~~~ 1841 (1866)
..-.+-+.|++..++|.+.+....+. ..+. +|.+.++....++.+.+-..+.+.+++..+
T Consensus 71 ~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~m 135 (174)
T PF04510_consen 71 MPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKM 135 (174)
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
No 367
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.79 E-value=4.5e+02 Score=28.55 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHHHhhcChhhHHHh--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000201 1091 SDVSLSVRQAALHVWKTIVANTPKTLKEI--MPVLMNTLISSLASSSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1091 ~D~~~~vR~~A~~~l~~l~~~~p~~l~~~--l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv 1150 (1866)
.+........++.|++.+..+. ..+..+ -|..+..|+.++.+++..+|..++..|+.+|
T Consensus 126 ~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 126 SEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456677888999999988643 333332 3567788888899999999999999998775
No 368
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=21.77 E-value=1.8e+03 Score=28.57 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=47.0
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTPK--TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1151 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p~--~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~ 1151 (1866)
.+.|.+..||....+++..++...|. .+++++..+...++..+.-...-+|..+.+.+..+-.
T Consensus 322 ~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 322 SLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRI 386 (740)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 46888899999999999999887663 4566777777777766553333499999998887653
No 369
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=21.73 E-value=2.2e+03 Score=29.44 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred HHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchh-eeeecC-CchhHHHH--------HHHHhhh-cCCccCC
Q 000201 299 ALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHD-PEKSVAEA--------AEDIWDR-YGYDFGT 367 (1866)
Q Consensus 299 ~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~--------~~~~w~~-~~~~~~~ 367 (1866)
.++..+|+++.+++.|+++|++.. .+..|...+ -++... .+-..|-. -.+.|.+ ++..+.+
T Consensus 9 ~~~~aqs~~p~s~k~AE~~Lrqwe--------~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p 80 (947)
T COG5657 9 QLDLAQSPDPPSVKCAEERLRQWE--------KQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILP 80 (947)
T ss_pred HHHhhcCCCCchHhhHHHHHHhhh--------ccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCC
Confidence 568889999999999999999875 233344333 222222 22222222 2378976 5555543
Q ss_pred C----h-hhhhhhcCCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHH
Q 000201 368 D----Y-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSL 412 (1866)
Q Consensus 368 ~----~-~~ll~~l~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~ 412 (1866)
+ + ..++..+-+.++...-+-++|++-+... +|+.|++++..|.+.
T Consensus 81 ~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~ 131 (947)
T COG5657 81 DENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSL 131 (947)
T ss_pred ccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhh
Confidence 3 2 5567777777777777888888888643 677666666666553
No 370
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.00 E-value=2.1e+03 Score=28.94 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHhCc
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD--RNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~--~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
..+.++.|+....+ .-|+.|.++|..+-..+-...+....+.++.++.+.. .+..+.+...+..|+.....
T Consensus 228 ~lk~lEtLls~c~K----Ksk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~--- 300 (988)
T KOG2038|consen 228 NLKSLETLLSSCKK----KSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKI--- 300 (988)
T ss_pred HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHH---
Confidence 34566666654432 3577777776654332210111111233444433321 22335555666666555433
Q ss_pred CchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 650 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 650 ~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
.+.+++..|-....|+=..|+..+..++-.+..+=+ ++-..+|-.++..|.+++.++-.-|...|-.+....|
T Consensus 301 ----ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP-EqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 301 ----LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP-EQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 244667777788899999999998888777765433 4446788889999999988877666666666655444
No 371
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=2e+03 Score=28.70 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=62.8
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC----CHHH--HHHHHHHHHHHHhccCC
Q 000201 1510 TGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS----TRTV--RSSAALALGKLSALSTR 1583 (1866)
Q Consensus 1510 ~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~----~~~v--R~~Aa~aLg~L~~~~~~ 1583 (1866)
+..+...+.+..+-++-.+|+..+..|+...|..++.....+...++..-+.- -.+. +..++.|+ ..
T Consensus 510 V~Dl~emL~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~F~etq~~aiVa~~v-------T~ 582 (849)
T KOG4346|consen 510 VADLFEMLLEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPKFKETQVDAIVAACV-------TQ 582 (849)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHHHh-------cC
Confidence 34445666666677889999999999999999888877777777776543322 1233 33333332 33
Q ss_pred hhhHHHHHHHHhccCC--hhH--HHHHHHHHHHHHHhcC
Q 000201 1584 VDPLVGDLLSSLQVSD--AGI--REAILTALKGVLKHAG 1618 (1866)
Q Consensus 1584 ~~~~l~~L~~~l~~~~--~~v--r~~~l~aL~~vi~~~~ 1618 (1866)
.++..+-+..++-.++ -.+ |-.++.++..--...+
T Consensus 583 p~pcapylcrqf~a~n~~YS~rQRiliL~vi~lAA~els 621 (849)
T KOG4346|consen 583 PPPCAPYLCRQFIAPNQGYSIRQRILILSVIHLAADELS 621 (849)
T ss_pred CCcchhHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 4566666777776555 334 4444555555444443
No 372
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.79 E-value=3.9e+03 Score=32.05 Aligned_cols=1077 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcHhhH---HhHHHHHHhhc---------CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHh
Q 000201 675 EAAECAARAMMSQLSAQGV---KLVLPSLLKGL---------EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 742 (1866)
Q Consensus 675 ~~a~~al~~i~~~l~~~~v---~~llp~L~~~L---------~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~ 742 (1866)
+...+..+.+-...+++.. +.++|.++..+ .++.-+.|...+++|..+.. .+.+.++-.+++..+.
T Consensus 26 k~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~--~e~~~~~~~~~~~~~~ 103 (3550)
T KOG0889|consen 26 KMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPH--NEVFKPFSQELLKVLM 103 (3550)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHH
Q ss_pred hhccCCChHHHHHHHHHHHHHHhhccch---hHHhHHHHHHHhh------------------CCCChhHHHHHHHHHhcc
Q 000201 743 EVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGL------------------TDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 743 ~~L~D~~~~VR~aA~~aL~~l~~~i~~~---~i~~lv~~L~~~l------------------~d~~~~vr~al~~L~~~~ 801 (1866)
.++...+.+.-.-|.+.+..+.+..+.. +++.++..+++.- .++....+.+........
T Consensus 104 ~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ly~~~~~~v~~~f~~p~~~~~~~~~~~~~~~~~~~~~~ 183 (3550)
T KOG0889|consen 104 RVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVIDLYKNMPNLVNEGFIEPKSTEEEPLNHPESADSSLTEYH 183 (3550)
T ss_pred HHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcCcCCCCCchhhhhhhcCccc
Q ss_pred ccccCCcchhhh------------HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCC
Q 000201 802 FVNTVDAPSLAL------------LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 869 (1866)
Q Consensus 802 ~~~~~~~~~l~~------------l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~ 869 (1866)
............ ++=.+.+..+..-...-..-...+-++.. +..++ .||...+..+..+++.+-.
T Consensus 184 ~~~~e~~~p~~~~~s~kvl~e~p~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~-v~~~d--~~~~~~~~~~~~~ll~~CP 260 (3550)
T KOG0889|consen 184 KIGVEQLLPSTYPQSFKVLAECPIIVVLLYQLYKQLIQTGIPELLPLILNFLS-VRVPD--SPYWMFLSDGTLQLLYDCP 260 (3550)
T ss_pred ccCccccCcccccceeeeheeccHHHHHHHHHHHHHhhhhhHHHHHHHHHHhC-CCCCC--CccchhHHHHHHHHHHhCh
Q ss_pred HhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhccc--------CCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHH
Q 000201 870 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS--------DNSNVERSGAAQGLSEVLAALGTV----YFEHILPD 937 (1866)
Q Consensus 870 ~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~--------~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~ 937 (1866)
.+.-..--..+-+.-..++.++-..++|.+=..+.. ..-...|--+...|++++..+-.+ .+...+..
T Consensus 261 ~el~~~RkElL~a~rhilst~~k~~f~P~id~L~de~iLiG~G~t~~e~lRplays~LAdllHhvR~~L~~~~i~~~i~l 340 (3550)
T KOG0889|consen 261 SELLSLRKELLVATRHILSTDLKRGFLPMIDKLLDERILIGTGFTAQESLRPLAYSMLADLLHHVRESLSLTQIIKVISL 340 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHhhhhhhhHHHhccceeecCCcchhhhccHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q ss_pred HHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc----------
Q 000201 938 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---------- 1007 (1866)
Q Consensus 938 l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---------- 1007 (1866)
....+.|+.-.+-..++.+= .+-.++..+.+.-.++.+.-|+.-...+..++..+..
T Consensus 341 ~s~~l~D~~l~~~iq~m~ak-------------LllNlve~i~~~~~~s~~~~~~lL~~il~~~v~kf~t~~~~~~~~~~ 407 (3550)
T KOG0889|consen 341 FSRNLHDSSLSSGIQTMSAK-------------LLLNLVERIEELGCQSVDRARDLLLRILESFVSKFKTFARYRDSAQF 407 (3550)
T ss_pred HHhhhcCcchHHHHHHHHHH-------------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q ss_pred --------------------------------cchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCC
Q 000201 1008 --------------------------------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1055 (1866)
Q Consensus 1008 --------------------------------~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~ 1055 (1866)
+....+.+.+..|++.--|.++. .+.++..+.+...
T Consensus 408 ~~~~~e~~~~~~~~~~~~~~~P~~~~~~~~kv~d~~~L~k~l~~G~Kti~~~i~~----------~~~p~~~~~v~~~-- 475 (3550)
T KOG0889|consen 408 QKCKYEIKIGELKNSLPKIERPAEVPSFGSKVNDCRFLFKTLVSGLKTIIWGIKV----------AKSPPPSGFVFNR-- 475 (3550)
T ss_pred HhhhhhhhHhhhccccccCCCccccCcccccchhHHHHHHHHHhhhHHhhHHhhh----------ccCCCccccccch--
Q ss_pred CCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHh
Q 000201 1056 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD-----VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1130 (1866)
Q Consensus 1056 ~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D-----~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~ 1130 (1866)
.-.....+..+....-+..+.=..-.+.......+-+ ....-+++--..-.-+..-.|..+.+++..-++.++.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~me~l~~~~~~~~~~~~~~~~~~s~r~keEke~lE~fa~vF~~i~~s~f~eIfe~~~p~ifer 555 (3550)
T KOG0889|consen 476 LWKYVMHTCSYISLVRDAMEVLEIYPVNKEDNYDNPSNSSSPRTKEEKEALEEFATVFEMIDPSVFYEIFETNSPFIFER 555 (3550)
T ss_pred hhhhhhHHHHHHHHHHHHHhHhhhhheeeccccccccccccccchhHHHHHHHHHHHHHHhCcHhHHHHHHHhhHHHHHH
Q ss_pred hcCCCHHHHHHHHHHHHH------HHHHhccccccchHHHHhcccCCCCccch-hhHHHHHHHHHHhhchhhHHhhHhhH
Q 000201 1131 LASSSSERRQVAGRALGE------LVRKLGERVLPSIIPILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDEL 1203 (1866)
Q Consensus 1131 l~~~~~~~R~~A~~~L~~------lv~~~~~~~l~~llp~L~~~L~d~~~~vr-~~a~~~L~~li~~~~~~~l~~~l~~l 1203 (1866)
+.. +......+...+.. ++..+..-.++.+.......+.+...-.| ......-.......+...+.+|++.|
T Consensus 556 i~~-n~~l~~i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~sv~~f~~~nervl~phv~~I 634 (3550)
T KOG0889|consen 556 ILK-NNALFHIANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFGSVSKFPSENERVLRPHVHDI 634 (3550)
T ss_pred Hhc-cCcHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhhhhhcccccchhhcccchhHH
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHh-hccccccchhhhhhhh
Q 000201 1204 IPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL-SVRTTAVLPHILPKLV 1282 (1866)
Q Consensus 1204 l~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il-~~~~~~ilp~Lip~L~ 1282 (1866)
+..-.+...+....... ...+-.+...+|.-..+.....++..| ...++.+..++ +.++...-..++....
T Consensus 635 i~~smela~~a~eplnY--f~LLraLFRsigGg~~d~ly~e~lplL------~~lLe~ln~l~~~~~s~~mkdLfvELcl 706 (3550)
T KOG0889|consen 635 ISTSMELATTAPEPLNY--FQLLRALFRSIGGGAFDSLYREVLPLL------PNLLEILNHLLSSFHSQGMKDLFVELCL 706 (3550)
T ss_pred HHHHHHHHhcCCcchhH--HHHHHHHHHHhhccchHhHHHHHHHHH------HHHHHHHHHHhhccCccchHHHHHHHHH
Q ss_pred cCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccchhc--------HHHHHHHH
Q 000201 1283 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVIDEEG--------VESLVSEL 1354 (1866)
Q Consensus 1283 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~--------~~~ll~~L 1354 (1866)
+.| +--..+.||++-++..++.+++.+ +++...+...+...+.+..+++ .+.+++.|
T Consensus 707 TvP--------------vRLS~Llpylp~LM~PLv~aLkgs-~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaL 771 (3550)
T KOG0889|consen 707 TLP--------------VRLSSLLPYLPLLMKPLVFALKGS-PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQAL 771 (3550)
T ss_pred hhh--------------HHHHHhhhhhhhhhhHHHHHhcCC-HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHH
Q ss_pred HhccCCC-chhHHHHHHHHHHHHH-----------------------------hhccchhhhhHHHHHHHHHHHhC--CC
Q 000201 1355 LKGVGDN-QASIRRSSAYLIGYFY-----------------------------KNSKLYLVDEAPNMISTLIVLLS--DS 1402 (1866)
Q Consensus 1355 ~~~l~~~-~~~vR~~a~~~l~~l~-----------------------------~~~~~~~~~~~~~il~~L~~ll~--d~ 1402 (1866)
...++.. +...-..|...+|.+. +.....+.--+...++..+..+. ..
T Consensus 772 w~~l~~~~~~s~s~~a~rILGKlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~ 851 (3550)
T KOG0889|consen 772 WSHLRPVPNYSYSHRALRILGKLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNS 851 (3550)
T ss_pred HHhccCCCCchHHHHHHHHHHhhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccC
Q ss_pred ChhHHHHHHHHHHHHHhcCCcch--hhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccc-cHHHHHHhhccC-
Q 000201 1403 DSTTVAAAWEALSRVVASVPKEV--QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP-LLPIFLQGLISG- 1478 (1866)
Q Consensus 1403 ~~~v~~~A~~aL~~l~~~~~~~~--l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~-ilp~l~~~L~~~- 1478 (1866)
+...+..|+..+.......-... ...-...+........+..................+.+... ++-..+.++..+
T Consensus 852 d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~ 931 (3550)
T KOG0889|consen 852 DPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQLLTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYAT 931 (3550)
T ss_pred CcchHHHHHHHHHHHHHHHHhhhccchhhHHHHHHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHH
Q ss_pred -CHHHHHHHHHHHHHHHhhcChhhhhhhhhh----------------------hhHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000201 1479 -SAELREQAALGLGELIEVTSEQSLKEFVIP----------------------ITGPLIRIIGDRFPWQVKSAILSTLSI 1535 (1866)
Q Consensus 1479 -~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~----------------------i~~~Li~~l~~~~~~~vr~~al~~L~~ 1535 (1866)
..+.|..+...+..++....--..-.+... +++.|+..+... +.+++.+...++..
T Consensus 932 ~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~-~~~~~~~g~~~l~~ 1010 (3550)
T KOG0889|consen 932 SCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHE-NSEMRPAGVRALKV 1010 (3550)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhcc-chhhhhhHHHHHHH
Q ss_pred HHHhc--------CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhcc----------
Q 000201 1536 IIRKG--------GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQV---------- 1597 (1866)
Q Consensus 1536 L~~~~--------~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~---------- 1597 (1866)
+.... .....|+++.+.+.+.++..++..--|.....+++.++..-+ ..-++......++.
T Consensus 1011 i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~-~~~l~d~~~d~~~~l~fvl~d~~~ 1089 (3550)
T KOG0889|consen 1011 IFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMP-SLWLLDFQVDILKALFFVLKDTES 1089 (3550)
T ss_pred HHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhch-HHHHHHHHHHHhhhHHHhhcCCcc
Q ss_pred -----CChhHHHHHHHHHHHHHHhcCccccH-HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhH---HHHHH
Q 000201 1598 -----SDAGIREAILTALKGVLKHAGKSVSS-AVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQ---LADLL 1668 (1866)
Q Consensus 1598 -----~~~~vr~~~l~aL~~vi~~~~~~l~~-~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~---~~~~l 1668 (1866)
+....+.....-+..+....+..-.. .....++..+...+.++++.||+.+.++|..++...+.+. +.++-
T Consensus 1090 e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K 1169 (3550)
T KOG0889|consen 1090 EVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFK 1169 (3550)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q ss_pred HHHHh-----ccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCCh------------------hH
Q 000201 1669 QELLN-----LASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKF------------------PL 1725 (1866)
Q Consensus 1669 ~~ll~-----~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~ 1725 (1866)
+.++. -........-.+.+.++...+..+|..+....-...+...+......++. ..
T Consensus 1170 ~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~L 1249 (3550)
T KOG0889|consen 1170 DVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRL 1249 (3550)
T ss_pred HHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccc
Q ss_pred HHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc
Q 000201 1726 REASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 1805 (1866)
Q Consensus 1726 r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~ 1805 (1866)
|.++...++.......-..+....+...++..+...+.+++++.-..+..+++.+-...+..-.+++...+.++...+-|
T Consensus 1250 r~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1250 RVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred hhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhH
Q ss_pred Cc
Q 000201 1806 GS 1807 (1866)
Q Consensus 1806 ~~ 1807 (1866)
.+
T Consensus 1330 ~~ 1331 (3550)
T KOG0889|consen 1330 HN 1331 (3550)
T ss_pred hh
No 373
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=20.44 E-value=3.7e+02 Score=29.93 Aligned_cols=67 Identities=22% Similarity=0.180 Sum_probs=44.0
Q ss_pred HhHHHHHHhhcCCCC-hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 694 KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~-w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
+.+++.......+.+ |-.|.+.+..+...-+. + ....+++.+-..+.|.+..|+.+..|+|.++++.
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~-~-----~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT-L-----DLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhcCc-c-----chhHHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 455565544444444 55555555544432221 1 1236788888899999999999999999999983
No 374
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=3.2e+02 Score=34.27 Aligned_cols=132 Identities=10% Similarity=0.071 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhcc---chhH-HhHHHHHHHhhCCCChhHH-HHHHHHHh--ccccccCCcc-hhhhHHHHHHHhhcC
Q 000201 753 QSAGQTALQQVGSVIK---NPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQ--TTFVNTVDAP-SLALLVPIVHRGLRE 824 (1866)
Q Consensus 753 R~aA~~aL~~l~~~i~---~~~i-~~lv~~L~~~l~d~~~~vr-~al~~L~~--~~~~~~~~~~-~l~~l~p~L~~~l~d 824 (1866)
-.+++.+|..+.+.+. ..-. .++...|++++.+|.-.+. .+...+.. ..|.. ..+. .-..++.++...+..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-L~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-LGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccc-hHHHHHHhhHHHHHHHHhhc
Confidence 3566777777765432 1111 3567778888888753222 11111111 11211 1111 123566777776666
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHh
Q 000201 825 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 825 ~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~ 885 (1866)
.+...|......+..+.-.......+.+....=+..+....+|+.+.|+......+..+.-
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 5556666555555544432233334555555567888889999999999999998888765
Done!