Query 000201
Match_columns 1866
No_of_seqs 775 out of 4187
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 00:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 3.2E-50 1.1E-54 578.3 87.4 1017 657-1852 6-1116(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1.4E-48 4.9E-53 561.3 75.6 1080 575-1839 7-1200(1230)
3 2bpt_A Importin beta-1 subunit 100.0 7.9E-35 2.7E-39 405.4 74.8 742 369-1231 6-857 (861)
4 4fdd_A Transportin-1; heat rep 100.0 2.5E-35 8.4E-40 407.2 68.9 707 369-1164 15-797 (852)
5 4fdd_A Transportin-1; heat rep 100.0 8.3E-33 2.9E-37 381.9 72.6 719 746-1608 23-817 (852)
6 1qgr_A Protein (importin beta 100.0 1.5E-32 5.1E-37 383.2 72.7 743 369-1231 3-871 (876)
7 2bpt_A Importin beta-1 subunit 100.0 3.1E-32 1.1E-36 379.2 75.3 751 746-1578 15-856 (861)
8 1qgr_A Protein (importin beta 100.0 1.4E-32 4.9E-37 383.4 68.0 754 742-1581 7-873 (876)
9 1b3u_A Protein (protein phosph 100.0 2.5E-33 8.7E-38 372.2 50.7 565 575-1229 11-585 (588)
10 1b3u_A Protein (protein phosph 100.0 1.1E-30 3.7E-35 346.8 52.3 557 460-1039 17-585 (588)
11 2iw3_A Elongation factor 3A; a 99.9 1.1E-22 3.6E-27 266.9 29.9 312 573-889 13-328 (986)
12 1wa5_C Importin alpha RE-expor 99.9 1.2E-17 4.1E-22 232.4 60.2 710 369-1212 7-868 (960)
13 2x1g_F Cadmus; transport prote 99.9 3.2E-18 1.1E-22 239.7 53.7 718 294-1152 7-859 (971)
14 2x19_B Importin-13; nuclear tr 99.9 2.6E-17 8.9E-22 230.7 62.0 712 294-1154 24-849 (963)
15 1wa5_C Importin alpha RE-expor 99.8 3E-17 1E-21 228.4 57.2 644 294-1002 5-790 (960)
16 1ibr_B P95, importin beta-1 su 99.8 3.7E-18 1.3E-22 218.6 34.7 395 369-783 3-460 (462)
17 1ibr_B P95, importin beta-1 su 99.8 5.2E-18 1.8E-22 217.3 33.3 391 820-1249 8-460 (462)
18 3m1i_C Exportin-1; heat repeat 99.8 9.6E-16 3.3E-20 215.1 48.9 518 290-889 12-622 (1049)
19 3now_A UNC-45 protein, SD10334 99.8 3.8E-14 1.3E-18 184.5 56.8 677 354-1151 42-782 (810)
20 3now_A UNC-45 protein, SD10334 99.8 5.7E-14 1.9E-18 182.8 58.0 661 574-1267 6-782 (810)
21 2x1g_F Cadmus; transport prote 99.8 3.3E-14 1.1E-18 199.0 57.9 679 587-1379 19-859 (971)
22 4hat_C Exportin-1; heat repeat 99.7 6.4E-14 2.2E-18 191.0 57.5 765 286-1192 8-881 (1023)
23 2x19_B Importin-13; nuclear tr 99.7 1.1E-12 3.6E-17 184.0 71.7 698 811-1660 23-849 (963)
24 2vgl_B AP-2 complex subunit be 99.7 5.3E-15 1.8E-19 193.6 44.3 506 577-1148 16-529 (591)
25 2vgl_B AP-2 complex subunit be 99.7 8E-15 2.8E-19 191.8 43.9 500 461-999 21-528 (591)
26 3ibv_A Exportin-T; karyopherin 99.7 6.1E-13 2.1E-17 181.5 62.8 616 294-1008 6-773 (980)
27 2jdq_A Importin alpha-1 subuni 99.7 1.8E-14 6E-19 183.7 33.8 345 617-965 22-393 (450)
28 3gjx_A Exportin-1; transport, 99.7 1.2E-12 4.1E-17 176.8 52.9 760 286-1190 20-905 (1073)
29 2jdq_A Importin alpha-1 subuni 99.7 2.3E-14 8E-19 182.5 34.4 393 738-1230 22-442 (450)
30 1wa5_B Importin alpha subunit; 99.7 1.5E-14 5.2E-19 187.9 33.0 382 655-1039 85-508 (530)
31 2z6g_A B-catenin; FULL-length, 99.7 2.5E-13 8.7E-18 182.9 44.2 527 538-1116 116-669 (780)
32 4b8j_A Importin subunit alpha- 99.7 8.8E-14 3E-18 180.8 37.8 388 575-1001 75-494 (528)
33 3m1i_C Exportin-1; heat repeat 99.6 2.7E-11 9.1E-16 170.0 64.9 782 574-1521 16-912 (1049)
34 1wa5_B Importin alpha subunit; 99.6 2.8E-14 9.6E-19 185.4 31.7 388 576-1003 89-510 (530)
35 4b8j_A Importin subunit alpha- 99.6 1.2E-13 4.1E-18 179.6 34.8 381 657-1039 74-494 (528)
36 2z6g_A B-catenin; FULL-length, 99.6 4.1E-13 1.4E-17 180.9 40.6 506 658-1234 116-666 (780)
37 2qk1_A Protein STU2; STU2P, XM 99.6 9.9E-15 3.4E-19 166.8 21.0 197 583-779 24-234 (249)
38 4hat_C Exportin-1; heat repeat 99.6 2.1E-10 7.3E-15 156.4 64.5 772 573-1521 15-912 (1023)
39 2qk2_A LP04448P; mini spindles 99.6 1.8E-14 6.1E-19 165.8 19.4 191 584-777 24-217 (242)
40 2z6h_A Catenin beta-1, beta-ca 99.6 1.4E-12 4.7E-17 173.3 40.4 453 583-1040 22-526 (644)
41 2z6h_A Catenin beta-1, beta-ca 99.6 3E-12 1E-16 170.0 43.3 468 614-1116 13-533 (644)
42 1w63_A Adapter-related protein 99.6 8.9E-13 3E-17 172.9 37.1 509 659-1230 36-576 (618)
43 3ibv_A Exportin-T; karyopherin 99.6 5.2E-10 1.8E-14 152.7 64.8 585 380-1019 21-745 (980)
44 1jdh_A Beta-catenin; beta-cate 99.6 2E-12 6.7E-17 168.4 36.9 456 576-1039 19-528 (529)
45 1w63_A Adapter-related protein 99.5 2.1E-11 7.1E-16 159.9 44.3 474 618-1150 73-576 (618)
46 1jdh_A Beta-catenin; beta-cate 99.5 6.5E-12 2.2E-16 163.5 37.0 461 537-1001 17-528 (529)
47 3ul1_B Importin subunit alpha- 99.5 7.1E-12 2.4E-16 160.9 33.0 379 658-1039 58-476 (510)
48 3tpo_A Importin subunit alpha- 99.5 1.5E-11 5.1E-16 158.9 33.7 382 655-1039 74-495 (529)
49 2qk2_A LP04448P; mini spindles 99.5 4.7E-13 1.6E-17 153.9 16.3 199 694-897 14-217 (242)
50 3ul1_B Importin subunit alpha- 99.5 1.9E-11 6.6E-16 156.8 32.6 387 576-1001 59-476 (510)
51 2vgl_A Adaptor protein complex 99.4 4.3E-11 1.5E-15 156.0 35.2 478 690-1228 69-586 (621)
52 3tpo_A Importin subunit alpha- 99.4 4.9E-11 1.7E-15 154.1 35.2 387 576-1001 78-495 (529)
53 3gjx_A Exportin-1; transport, 99.4 1.3E-07 4.4E-12 128.2 64.0 376 1092-1522 490-937 (1073)
54 2qk1_A Protein STU2; STU2P, XM 99.4 7.7E-12 2.6E-16 142.8 18.8 200 699-899 20-234 (249)
55 2vgl_A Adaptor protein complex 99.3 1.1E-08 3.8E-13 133.2 46.9 498 588-1149 51-587 (621)
56 4ady_A RPN2, 26S proteasome re 99.3 1.1E-06 3.9E-11 114.3 60.7 337 711-1150 374-718 (963)
57 1oyz_A Hypothetical protein YI 99.3 2.1E-10 7.3E-15 135.2 24.1 251 658-957 24-277 (280)
58 1oyz_A Hypothetical protein YI 99.3 2.6E-10 9E-15 134.3 23.7 252 616-919 24-277 (280)
59 4ady_A RPN2, 26S proteasome re 99.2 7.4E-06 2.5E-10 106.8 58.5 262 1095-1417 451-717 (963)
60 3ltj_A Alpharep-4; protein eng 99.1 1.4E-09 4.7E-14 121.0 20.2 189 651-884 8-197 (201)
61 2iw3_A Elongation factor 3A; a 99.1 1.2E-09 4.2E-14 144.0 21.7 288 911-1234 30-327 (986)
62 3a6p_A Exportin-5; exportin-5, 99.1 4.2E-08 1.4E-12 137.9 38.3 538 294-905 11-682 (1204)
63 3ltm_A Alpha-REP4; protein eng 99.1 2.3E-09 7.8E-14 120.2 19.9 187 656-887 18-205 (211)
64 3opb_A SWI5-dependent HO expre 99.0 8.9E-06 3E-10 103.9 50.8 540 615-1189 132-728 (778)
65 1xm9_A Plakophilin 1; armadill 99.0 2.6E-08 8.9E-13 125.5 24.3 338 697-1039 4-447 (457)
66 4db8_A Armadillo-repeat protei 99.0 7.9E-09 2.7E-13 119.5 18.1 223 659-884 14-250 (252)
67 3ltm_A Alpha-REP4; protein eng 99.0 1.6E-08 5.4E-13 113.4 19.9 183 694-922 18-201 (211)
68 4hxt_A De novo protein OR329; 99.0 3.4E-08 1.2E-12 114.1 22.9 231 658-890 3-246 (252)
69 3opb_A SWI5-dependent HO expre 99.0 2.2E-06 7.6E-11 109.4 40.7 478 548-1040 181-727 (778)
70 3ltj_A Alpharep-4; protein eng 98.9 3E-08 1E-12 110.1 20.8 182 694-921 13-195 (201)
71 3l6x_A Catenin delta-1; cateni 98.9 1.4E-07 4.9E-12 118.9 29.0 342 697-1040 50-475 (584)
72 3l6x_A Catenin delta-1; cateni 98.9 3E-07 1E-11 116.1 29.9 345 537-885 48-476 (584)
73 1vsy_5 Proteasome activator BL 98.9 2.9E-06 1E-10 114.2 40.7 412 1094-1541 521-969 (997)
74 1xm9_A Plakophilin 1; armadill 98.9 2.5E-07 8.4E-12 116.6 28.7 343 617-962 4-449 (457)
75 4hxt_A De novo protein OR329; 98.9 6.2E-08 2.1E-12 111.9 21.3 227 616-843 3-242 (252)
76 3oc3_A Helicase MOT1, MOT1; re 98.9 3.8E-08 1.3E-12 115.5 18.6 252 575-881 175-432 (800)
77 4gmo_A Putative uncharacterize 98.9 3.3E-09 1.1E-13 140.2 11.0 90 1160-1250 35-129 (684)
78 4db8_A Armadillo-repeat protei 98.8 4.1E-08 1.4E-12 113.4 16.8 226 538-765 13-251 (252)
79 3nmz_A APC variant protein; pr 98.8 4.1E-07 1.4E-11 112.3 25.0 310 694-1005 69-452 (458)
80 3nmz_A APC variant protein; pr 98.8 4E-07 1.4E-11 112.4 24.8 317 613-967 68-455 (458)
81 3a6p_A Exportin-5; exportin-5, 98.8 6.6E-05 2.3E-09 105.6 49.5 141 576-725 13-163 (1204)
82 2of3_A ZYG-9; multifunctional 98.7 7.6E-07 2.6E-11 99.8 21.6 175 586-770 57-241 (266)
83 4db6_A Armadillo repeat protei 98.7 3.7E-07 1.3E-11 102.0 19.3 192 657-885 12-209 (210)
84 2db0_A 253AA long hypothetical 98.7 7.3E-06 2.5E-10 82.2 25.6 204 573-791 31-234 (253)
85 4db6_A Armadillo repeat protei 98.7 2.4E-07 8.3E-12 103.5 16.4 189 576-765 13-209 (210)
86 1vsy_5 Proteasome activator BL 98.6 8.1E-05 2.8E-09 100.3 42.0 391 1340-1740 499-968 (997)
87 2db0_A 253AA long hypothetical 98.6 1.3E-05 4.4E-10 80.4 23.8 218 852-1109 28-245 (253)
88 4ffb_C Protein STU2; tubulin f 98.6 6E-07 2.1E-11 104.9 16.9 195 1017-1236 14-217 (278)
89 4ffb_C Protein STU2; tubulin f 98.6 9.5E-07 3.3E-11 103.2 18.1 187 700-890 14-217 (278)
90 2of3_A ZYG-9; multifunctional 98.5 3.4E-06 1.2E-10 94.5 19.1 183 699-891 50-242 (266)
91 1xqr_A HSPBP1 protein; armadil 98.4 7.5E-06 2.6E-10 95.3 20.5 135 631-766 55-197 (296)
92 3nmw_A APC variant protein; AR 98.4 1.4E-05 4.8E-10 95.7 22.2 225 630-890 98-339 (354)
93 3nmw_A APC variant protein; AR 98.4 1.1E-05 3.9E-10 96.5 20.3 254 512-767 47-336 (354)
94 3oc3_A Helicase MOT1, MOT1; re 98.3 3.4E-06 1.2E-10 99.4 14.5 254 696-999 175-432 (800)
95 3b2a_A TON_1937, putative unch 98.2 8E-05 2.7E-09 78.8 20.0 217 974-1225 33-255 (265)
96 1xqr_A HSPBP1 protein; armadil 98.2 1.5E-05 5.3E-10 92.6 15.9 175 590-766 55-239 (296)
97 3grl_A General vesicular trans 97.9 0.003 1E-07 78.7 30.1 321 572-924 19-394 (651)
98 3tjz_B Coatomer subunit gamma; 97.9 0.00011 3.9E-09 86.5 16.7 277 736-1033 68-345 (355)
99 3b2a_A TON_1937, putative unch 97.8 0.0057 1.9E-07 65.0 25.0 216 657-878 33-254 (265)
100 3tjz_B Coatomer subunit gamma; 97.8 0.0004 1.4E-08 81.9 17.9 314 658-996 27-346 (355)
101 1te4_A Conserved protein MTH18 97.7 6.4E-06 2.2E-10 83.7 0.7 111 656-791 11-121 (131)
102 1lrv_A LRV, leucine-rich repea 97.6 6.6E-06 2.3E-10 92.0 -0.4 188 579-881 54-242 (244)
103 1te4_A Conserved protein MTH18 97.5 8.2E-05 2.8E-09 75.4 5.7 117 617-762 14-130 (131)
104 3l9t_A Putative uncharacterize 97.4 0.0023 7.7E-08 69.1 16.0 180 534-731 34-214 (240)
105 3grl_A General vesicular trans 97.4 0.099 3.4E-06 65.3 32.3 177 747-925 33-242 (651)
106 4gmo_A Putative uncharacterize 97.4 0.26 8.7E-06 64.8 38.4 88 695-783 35-128 (684)
107 1lrv_A LRV, leucine-rich repea 97.4 5.4E-05 1.8E-09 84.6 2.3 40 664-717 81-120 (244)
108 3tt9_A Plakophilin-2; cell adh 97.3 0.0022 7.5E-08 71.1 14.7 192 695-886 8-230 (233)
109 3u0r_A Apoptosis inhibitor 5; 97.1 0.21 7.1E-06 59.5 29.3 297 1477-1788 39-364 (507)
110 3l9t_A Putative uncharacterize 97.0 0.0084 2.9E-07 64.7 14.7 184 1582-1793 33-218 (240)
111 3tt9_A Plakophilin-2; cell adh 96.4 0.031 1.1E-06 61.8 14.3 124 658-783 9-144 (233)
112 3o2t_A Symplekin; heat repeat, 95.1 3 0.0001 49.2 24.7 248 1590-1846 29-324 (386)
113 4atg_A TAF6; transcription, TF 94.4 1.1 3.9E-05 47.2 16.6 145 572-724 9-162 (196)
114 3u0r_A Apoptosis inhibitor 5; 94.3 12 0.00041 44.8 29.0 262 1522-1805 41-319 (507)
115 4atg_A TAF6; transcription, TF 94.0 2.1 7.3E-05 45.1 17.8 110 826-941 59-176 (196)
116 1lsh_A Lipovitellin (LV-1N, LV 93.7 1.5 5.3E-05 60.2 21.0 153 669-842 407-576 (1056)
117 3o2t_A Symplekin; heat repeat, 92.5 19 0.00065 42.4 24.7 87 1328-1418 42-128 (386)
118 3gs3_A Symplekin, LD45768P; he 90.1 26 0.0009 38.8 26.0 141 672-842 30-173 (257)
119 1vsy_4 Proteasome activator BL 90.1 15 0.0005 48.3 22.7 268 1464-1739 337-688 (799)
120 1vsy_4 Proteasome activator BL 89.6 20 0.00068 47.0 23.3 278 693-983 337-666 (799)
121 3gs3_A Symplekin, LD45768P; he 88.7 33 0.0011 38.0 24.7 90 1326-1419 30-119 (257)
122 1lsh_A Lipovitellin (LV-1N, LV 83.5 1.1E+02 0.0036 42.1 26.5 149 595-761 375-539 (1056)
123 3fga_B Serine/threonine-protei 82.7 60 0.0021 38.3 20.0 105 1478-1583 263-370 (403)
124 1upk_A MO25 protein; transfera 82.2 76 0.0026 36.3 21.8 193 855-1112 77-285 (341)
125 2b6c_A Hypothetical protein EF 80.4 16 0.00054 39.8 13.5 139 578-732 58-196 (220)
126 3fga_B Serine/threonine-protei 77.6 1.2E+02 0.0041 35.8 22.1 255 706-1003 95-366 (403)
127 3s4w_B Protein FACD2, fanconi 76.6 2.4E+02 0.0082 38.8 33.5 82 651-732 394-475 (1323)
128 3jxy_A Alkylpurine DNA glycosy 76.5 27 0.00092 38.3 14.0 141 1632-1793 65-206 (232)
129 3g2s_A C-terminal fragment of 76.2 23 0.00079 35.6 12.0 76 694-769 47-130 (149)
130 3ldz_A STAM-1, signal transduc 76.2 14 0.00049 36.8 10.5 76 694-769 41-118 (140)
131 2b6c_A Hypothetical protein EF 74.7 24 0.00081 38.4 12.8 141 1631-1792 58-198 (220)
132 2npp_B PP2A, B subunit, serine 74.3 1.2E+02 0.004 36.5 19.3 227 1586-1825 162-401 (449)
133 1w9c_A CRM1 protein, exportin 73.6 61 0.0021 37.0 15.9 120 630-749 87-228 (321)
134 1mhq_A ADP-ribosylation factor 73.0 33 0.0011 34.5 12.2 76 694-769 37-120 (148)
135 1x5b_A Signal transducing adap 71.4 22 0.00075 36.5 10.7 75 694-768 51-128 (163)
136 1w9c_A CRM1 protein, exportin 69.8 54 0.0019 37.4 14.4 136 871-1006 44-199 (321)
137 2npp_B PP2A, B subunit, serine 69.3 2E+02 0.0067 34.6 21.9 251 706-1003 128-399 (449)
138 1vdy_A Hypothetical protein (R 66.2 22 0.00074 35.2 8.9 64 916-979 32-95 (140)
139 1juq_A ADP-ribosylation factor 66.2 47 0.0016 34.2 12.0 77 693-769 48-132 (171)
140 3jxy_A Alkylpurine DNA glycosy 65.7 82 0.0028 34.3 14.8 140 578-733 64-204 (232)
141 3ut4_A CTHE_2751, putative unc 64.1 41 0.0014 32.8 10.1 88 686-787 22-109 (134)
142 3ldz_A STAM-1, signal transduc 64.1 72 0.0024 31.7 12.5 80 1344-1423 37-118 (140)
143 3dad_A FH1/FH2 domain-containi 62.8 1.8E+02 0.0063 33.2 16.8 142 1522-1663 131-292 (339)
144 3g2s_A C-terminal fragment of 59.8 83 0.0028 31.5 12.0 75 931-1005 46-128 (149)
145 1juq_A ADP-ribosylation factor 59.4 79 0.0027 32.6 12.2 79 1345-1423 46-132 (171)
146 1upk_A MO25 protein; transfera 57.9 2.6E+02 0.0088 32.0 21.0 180 629-842 91-283 (341)
147 1x5b_A Signal transducing adap 56.8 98 0.0034 31.6 12.3 80 1344-1423 47-129 (163)
148 3dad_A FH1/FH2 domain-containi 50.2 3.4E+02 0.012 31.1 18.1 113 657-769 160-290 (339)
149 3s4w_B Protein FACD2, fanconi 49.1 6.9E+02 0.024 34.4 28.5 142 1593-1741 407-552 (1323)
150 1mhq_A ADP-ribosylation factor 48.7 2.2E+02 0.0074 28.4 14.2 74 932-1005 37-118 (148)
151 1vdy_A Hypothetical protein (R 48.4 35 0.0012 33.7 6.9 75 1345-1419 45-130 (140)
152 1ho8_A Vacuolar ATP synthase s 48.3 4.4E+02 0.015 31.8 23.8 59 826-885 418-476 (480)
153 1elk_A Target of MYB1; superhe 48.2 96 0.0033 31.4 10.5 76 693-768 51-133 (157)
154 4flb_A Regulation of nuclear P 41.4 2.2E+02 0.0074 27.7 11.7 109 1552-1664 10-121 (132)
155 3zyq_A Hepatocyte growth facto 37.0 1.2E+02 0.004 32.9 9.7 76 694-769 44-122 (226)
156 3zyq_A Hepatocyte growth facto 36.1 3.4E+02 0.012 29.2 13.2 80 1344-1423 40-122 (226)
157 3rru_A TOM1L1 protein; structu 35.9 2.1E+02 0.0072 28.7 10.5 76 694-769 52-134 (152)
158 2jak_A Serine/threonine-protei 35.1 4.4E+02 0.015 30.9 14.6 182 1586-1777 174-362 (392)
159 1elk_A Target of MYB1; superhe 33.5 3.6E+02 0.012 27.1 12.1 75 931-1005 51-132 (157)
160 3ut4_A CTHE_2751, putative unc 32.1 2.2E+02 0.0076 27.7 9.4 82 1342-1437 24-105 (134)
161 1dvp_A HRS, hepatocyte growth 30.7 1.8E+02 0.0061 31.3 9.9 75 694-768 41-118 (220)
162 3bhp_A UPF0291 protein YNZC; N 27.7 54 0.0018 26.9 3.6 35 60-96 12-48 (60)
163 1ho8_A Vacuolar ATP synthase s 26.6 9.1E+02 0.031 29.1 32.4 188 1511-1740 274-478 (480)
164 1dvp_A HRS, hepatocyte growth 25.8 5.7E+02 0.019 27.2 12.8 79 1344-1422 37-118 (220)
165 2fv2_A RCD1 required for cell 23.5 7.5E+02 0.026 27.0 12.7 124 1503-1635 95-221 (268)
166 4flb_A Regulation of nuclear P 21.9 5.4E+02 0.018 24.8 10.9 98 656-761 7-108 (132)
167 3d9j_A RNA-binding protein 16; 21.1 2.5E+02 0.0084 27.9 8.0 87 1723-1816 19-112 (145)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.2e-50 Score=578.33 Aligned_cols=1017 Identities=17% Similarity=0.186 Sum_probs=761.1
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh----hcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQ----LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~----l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
.-++.++..+.+++.++|..|...+...... +.+...+.+++.+++.+.+++|++|..|+.+|+.++..++. .
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 3467788889999999999998877765432 22234578999999999999999999999999999988766 4
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 812 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~ 812 (1866)
+++.+++.++..+.|+++.||.+|+.+|+.++..+..+.. +. ......+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~------------~~------------------~~~~~~~~ 132 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS------------GS------------------ALAANVCK 132 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----------------C------------------CTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc------------cc------------------chHHHHHH
Confidence 5678899999999999999999999999999876653210 00 00012455
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 813 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 813 ~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
.++|.+.+.+. +.++.+|..|+.+++.++...+ +.+.+|.+.+++.+...+.++++.||..|+.+++.++...+++.
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~--~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC--SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 67788888887 4778999999999999997543 36778999999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 968 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f 968 (1866)
++.+++.+++.+.+..+...|..++++++.++...|.. +++.++|.+++.+.++++.+|+.++.+++.++..+|..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 88899999988876544347888999999999988864 567899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhccCC-------------------------------------ChHHHHHHHHHHHHHHHhhcc---c
Q 000201 969 QNYLQQVLPAILDGLADE-------------------------------------NESVRDAALGAGHVLVEHYAT---T 1008 (1866)
Q Consensus 969 ~~~l~~il~~ll~~l~d~-------------------------------------~~~VR~~a~~al~~i~~~~~~---~ 1008 (1866)
.||++.++|.++..+..+ ...+|..+..++..+....+. .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 999999999999877421 124688888888887775442 2
Q ss_pred chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHH
Q 000201 1009 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1088 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~ 1088 (1866)
.+..++|.+...+.|.++.+|.++++.++.++...+...+.. . +. ..-...+.....+. ...+.+++.+..
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~--~-~~-~~~~~~~~~~~~~~-----~~l~~ll~~l~~ 441 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL--C-DP-DAMEQGETPLTMLQ-----SQVPNIVKALHK 441 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------------CCCHHHHHH-----HHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccc--c-Cc-cccccccchHHHHH-----HHhhHHHHHHHH
Confidence 345567877777788888899988888888876653211000 0 00 00000000000111 223456666666
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHhccc----cccchH
Q 000201 1089 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS--ERRQVAGRALGELVRKLGER----VLPSII 1162 (1866)
Q Consensus 1089 ~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~--~~R~~A~~~L~~lv~~~~~~----~l~~ll 1162 (1866)
.+.|.++.+|+.++.+++.++...+..+.++++.+++.+...+.+++. .+|..++.+++.++...++. .++.++
T Consensus 442 ~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll 521 (1230)
T 1u6g_C 442 QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521 (1230)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH
Confidence 688999999999999999999887777778899999999999988764 88999999999998877655 567889
Q ss_pred HHHhcccCCCCccchhhHHHHHHHHHHhhch------hhHHhhHhhHHHHHHHhh--cCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGK------SQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1163 p~L~~~L~d~~~~vr~~a~~~L~~li~~~~~------~~l~~~l~~ll~~l~~~L--~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
|.+...+.++++.+|..++.+++.++..+++ ..+.+|++.+++.+...+ .|.++++|..|..+++.+....|
T Consensus 522 p~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 522 PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999889998888888899999998877654 356789999999999988 78899999999999999999888
Q ss_pred hhh---HhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHH-hCCCchhhHh
Q 000201 1235 MQA---IDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEV-AGPGLNFHLG 1310 (1866)
Q Consensus 1235 ~~~---~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~-~g~~l~~~l~ 1310 (1866)
... +..++|.|.+.+.++..+..++.++.. ++.. .+..+.++++
T Consensus 602 ~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~--------------------------------i~~~~~~~~~~~~~~ 649 (1230)
T 1u6g_C 602 DNLGSDLPNTLQIFLERLKNEITRLTTVKALTL--------------------------------IAGSPLKIDLRPVLG 649 (1230)
T ss_dssp GGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHH--------------------------------HTTCSSCCCCHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccchhHHHHHHHHHH--------------------------------HHhCccccchHHHHH
Confidence 643 344455555555544333233333322 2211 1235678999
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccch----hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhh
Q 000201 1311 TILPALLSAMGDDDMDVQSLAKEAAETVTLVIDE----EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVD 1386 (1866)
Q Consensus 1311 ~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~ 1386 (1866)
.++|.+...+.+++..+|..+..+++.++...+. +.+..++..+...+.++|+..+..+..++..+++..+..+.+
T Consensus 650 ~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~ 729 (1230)
T 1u6g_C 650 EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSK 729 (1230)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHH
Confidence 9999999999999999999999999999987653 345555555556677888999999999999999877777777
Q ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccc
Q 000201 1387 EAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQP 1466 (1866)
Q Consensus 1387 ~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ 1466 (1866)
+.+.+++.++..+.++.- ...+..++..+.+.. ... +. + +..+..
T Consensus 730 ~~~~~l~~~~~~l~~~~~--~~~~~~~l~~~~~~l---------------~~~----------~~-----~---~~~~~~ 774 (1230)
T 1u6g_C 730 ISGSILNELIGLVRSPLL--QGGALSAMLDFFQAL---------------VVT----------GT-----N---NLGYMD 774 (1230)
T ss_dssp TTTTTHHHHHHHHTCTTC--CHHHHHHHHHHHHHH---------------HTT----------CC-----T---TCSHHH
T ss_pred hHHhHHHHHHHHHcCccc--chHHHHHHHHHHHHH---------------Hhc----------CC-----C---CCCHHH
Confidence 788888888888865531 111222222221110 000 00 0 012223
Q ss_pred cHHHHHHhhcc-----CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhc
Q 000201 1467 LLPIFLQGLIS-----GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKG 1540 (1866)
Q Consensus 1467 ilp~l~~~L~~-----~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~-~~~~~vr~~al~~L~~L~~~~ 1540 (1866)
+++.+.+.+.. .....+..++.+++.++..++. .....+.. ++..+.+ ......+..++.+++.+....
T Consensus 775 ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 849 (1230)
T 1u6g_C 775 LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK-EGPAVVGQ----FIQDVKNSRSTDSIRLLALLSLGEVGHHI 849 (1230)
T ss_dssp HHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCC-CSHHHHTT----TTTTTTTTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcch-hhHHHHHH----HHHHhCCCCccHHHHHHHHHHHHHhcccC
Confidence 33333322211 1234577889999999987743 22222222 2333332 135677888888999887654
Q ss_pred CCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCcc
Q 000201 1541 GIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS 1620 (1866)
Q Consensus 1541 ~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~ 1620 (1866)
+ +.+ .|++++++++++.++++.||.+|+.+||.++. ++++.++|.+++.+.+. ++.|+.++++|++++.+.+..
T Consensus 850 ~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~--~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~ 923 (1230)
T 1u6g_C 850 D--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV--GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVV 923 (1230)
T ss_dssp C--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCST
T ss_pred C--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc--cCHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChh
Confidence 3 344 48899999999999999999999999999974 56778999999999764 677999999999999987766
Q ss_pred ccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCc
Q 000201 1621 VSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1621 l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
...++...|+..|...+.+.++.+|..+++|+|.++...++
T Consensus 924 ~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~--------------------------------------- 964 (1230)
T 1u6g_C 924 GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------------------------------------- 964 (1230)
T ss_dssp TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG---------------------------------------
T ss_pred hHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH---------------------------------------
Confidence 66799999999999988888889999999999999876542
Q ss_pred ccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000201 1701 ISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSV 1780 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~ 1780 (1866)
.+++.+.+.+.++++.+|.+++.++++++.... +..+.++.++++.++.+++|++.+||++|+++++++
T Consensus 965 --------~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~---~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~ 1033 (1230)
T 1u6g_C 965 --------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHP---QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1033 (1230)
T ss_dssp --------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC---CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCc---hhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 122233334566777889999999888876553 223457788889999999999999999999999999
Q ss_pred HhhCcchhhhhHhhHHHHHHhhhccCcc------------------hhhhhHHHHHHHhhcccccchhHHHHHHHhhhhh
Q 000201 1781 AKANPSAIMVHVALFGPALAECLKDGST------------------PVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLD 1842 (1866)
Q Consensus 1781 a~~~~~~~~~~l~~l~p~l~~~~~~~~~------------------~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~~ 1842 (1866)
++++|+.+.++++.++|.|+++++.++. .+|.+|..|+..+++...+ ..+ +.+|+
T Consensus 1034 ~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~--~i~-~~~~~---- 1106 (1230)
T 1u6g_C 1034 AHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD--RLD-IFEFL---- 1106 (1230)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS--SSC-HHHHH----
T ss_pred HhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH--hCC-HHHHH----
Confidence 9999999999999999999999865443 7999999999999987544 222 44444
Q ss_pred hhhhccCCCC
Q 000201 1843 ARRLSKFPEH 1852 (1866)
Q Consensus 1843 ~~~~~~~~~~ 1852 (1866)
.+|+..||++
T Consensus 1107 ~~~~~gl~d~ 1116 (1230)
T 1u6g_C 1107 NHVEDGLKDH 1116 (1230)
T ss_dssp HHHHHTTSSC
T ss_pred HHHHcccCch
Confidence 4889999984
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.4e-48 Score=561.27 Aligned_cols=1080 Identities=17% Similarity=0.183 Sum_probs=780.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCc--chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~--~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+..++.++. +.+.+.|+.|...|...++.... +......+++.+.+.+.+ .+|..|.+|+.+++.+++..+.
T Consensus 7 ~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 7 HISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCCH---
Confidence 4556677764 56678999999888877654211 101123578888888875 5789999999999999987653
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---------hHHhHHHHHHhhcC-CCChhhHHHHHHHHHHH
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---------GVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---------~v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l 722 (1866)
+++..+++.++..+.|+++.||.++..+++.++..+++. ..+.++|.+++.+. +++|++|.+|+.+|+.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999988875 36899999999998 58999999999999999
Q ss_pred HhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC-hhHH-HHHHHHHhc
Q 000201 723 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN-DHTK-YSLDILLQT 800 (1866)
Q Consensus 723 ~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~-~~vr-~al~~L~~~ 800 (1866)
++..++.+..+++.+++.+...+.|+++.||..|+.+++.++...++..+..+++.+++.+.+++ ..+| .++..+...
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l 241 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI 241 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 99888877778899999999999999999999999999999988876666777787777765443 2233 344444331
Q ss_pred -cccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc-------------
Q 000201 801 -TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV------------- 866 (1866)
Q Consensus 801 -~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~------------- 866 (1866)
......-.+++..++|.+.+.+.+.++++|..+..+++.++...+ +.+.+|++.++|.+...+.
T Consensus 242 ~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 242 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP--KEVYPHVSTIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT--CCCHHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh--HHHHHhHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 111112235678899999999999999999999999999998643 4778999999999877663
Q ss_pred ------------------------CCCHhHHHHHHHHHHHHHhhcCC---CChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 867 ------------------------DPIPEVRSVAARAIGSLIRGMGE---ENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 867 ------------------------d~~~~vR~~a~~aL~~l~~~~g~---~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
|..|.+|..|+.+++.++...++ .+++.++|.+...+.+.. ..+|..++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l 398 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE-ENVKADVFHAY 398 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 12467899999999999997664 256677888877775544 45899999999
Q ss_pred HHHHHHhCh------------------h----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 920 SEVLAALGT------------------V----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 920 ~~l~~~~g~------------------~----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
+.++...|. . .++.+++.+.+.+.++++.+|.+++.+++.+...++..+.+|++.++|
T Consensus 399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~ 478 (1230)
T 1u6g_C 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP 478 (1230)
T ss_dssp HHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHH
T ss_pred HHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH
Confidence 988887653 1 335556666666889999999999999999999988888899999999
Q ss_pred HHHhhccCCCh--HHHHHHHHHHHHHHHhhccc----chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccccc
Q 000201 978 AILDGLADENE--SVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL 1051 (1866)
Q Consensus 978 ~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~----~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~ 1051 (1866)
.++..+.|+.+ .+|..++.++..++...+.. .++.++|.+...+.|.+|++|..++..++.++..+....
T Consensus 479 ~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~---- 554 (1230)
T 1u6g_C 479 GIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD---- 554 (1230)
T ss_dssp HHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc----
Confidence 99999999875 89999999998888766554 456788999999999999999999999999886653210
Q ss_pred ccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1052 LEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1052 ~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
.. ..... ..+.+.+++.+...+ .|.+..+|..|+.+++.++...+..+.++++.+++.+..
T Consensus 555 ----~~-~~~~~------------~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 555 ----QP-SSFDA------------TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLE 617 (1230)
T ss_dssp ----SC-CCCCC------------HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHH
T ss_pred ----cc-cccch------------HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 00 00000 023345666666655 788899999999999999998888777889999999988
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhc----cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLG----ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1205 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~----~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~ 1205 (1866)
.+.+. ..|..+..+++.++.... ..+++.++|.+...+.++++.+|.+++.+++.++...+.....+++..++.
T Consensus 618 ~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~ 695 (1230)
T 1u6g_C 618 RLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD 695 (1230)
T ss_dssp HTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT
T ss_pred Hhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 87643 478889999998875432 235688899999999999999999999999999887754322233333443
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhh
Q 000201 1206 TIRTALCDSILEVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 1282 (1866)
Q Consensus 1206 ~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~ 1282 (1866)
.+...+.+.|.++...+..++..+.+..+.. ..+.++|.++..+.+...++.++..+..++.
T Consensus 696 ~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~--------------- 760 (1230)
T 1u6g_C 696 ELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ--------------- 760 (1230)
T ss_dssp TCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHH---------------
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHH---------------
Confidence 3445567888888888888888887655432 2345666666665554323333332222111
Q ss_pred cCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHHHhcCC-----CCHHHHHHHHHHHhHhhhccchhcHHHHHHHHHhc
Q 000201 1283 HLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD-----DDMDVQSLAKEAAETVTLVIDEEGVESLVSELLKG 1357 (1866)
Q Consensus 1283 ~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~~~l~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~ 1357 (1866)
.+... +.. ...+..+++.++..+.. .+...+..+..+++.++...++... .+++.+...
T Consensus 761 -------------~l~~~-~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~ 824 (1230)
T 1u6g_C 761 -------------ALVVT-GTN-NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQD 824 (1230)
T ss_dssp -------------HHHTT-CCT-TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTT
T ss_pred -------------HHHhc-CCC-CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHH
Confidence 11100 110 23456666666544332 2345677778888888876654332 677777777
Q ss_pred cCC--CchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHH
Q 000201 1358 VGD--NQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRD 1435 (1866)
Q Consensus 1358 l~~--~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~ 1435 (1866)
+++ .+...+..++.+++.+.... ++.+ .+++.+.+...+.|+++.||.+|+.+|+.++...
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~--~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~-------------- 887 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHI--DLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVGN-------------- 887 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHS--CCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT--------------
T ss_pred hCCCCccHHHHHHHHHHHHHhcccC--CCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccC--------------
Confidence 764 35667788888888774422 2333 2567888889999999999999999999986321
Q ss_pred HHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHH
Q 000201 1436 AISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIR 1515 (1866)
Q Consensus 1436 ~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~ 1515 (1866)
+..++|.+++++.++ ++.|...+.++++++...+.+.+.||+..+
T Consensus 888 ----------------------------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i------ 932 (1230)
T 1u6g_C 888 ----------------------------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENI------ 932 (1230)
T ss_dssp ----------------------------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHH------
T ss_pred ----------------------------HHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHH------
Confidence 123345555555443 445667777777777655444445554444
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHh
Q 000201 1516 IIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSL 1595 (1866)
Q Consensus 1516 ~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l 1595 (1866)
++.+++.+.+.++.+|..++.|+|.+....+ +.++|.+.+.+
T Consensus 933 ------------------------------------~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--~~l~p~l~~~l 974 (1230)
T 1u6g_C 933 ------------------------------------WALLLKHCECAEEGTRNVVAECLGKLTLIDP--ETLLPRLKGYL 974 (1230)
T ss_dssp ------------------------------------HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--GGTHHHHTTTS
T ss_pred ------------------------------------HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--HHHHHHHHHHh
Confidence 4444444444455677777777777765433 56777777777
Q ss_pred ccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh---HHHHHHHHHH
Q 000201 1596 QVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG---QLADLLQELL 1672 (1866)
Q Consensus 1596 ~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~---~~~~~l~~ll 1672 (1866)
+++++.+|..++.+++.++...+.... ++...++..+...+.+++..+|..+..+++.+++..|+. .+..+++.+.
T Consensus 975 ~~~~~~~R~~~~~~l~~~~~~~~~~~~-~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISGSSYARSSVVTAVKFTISDHPQPID-PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSSCHHHHHHHHHHTGGGCCSSCCTHH-HHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHccCchhhH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 777777888888888777776665554 677777777777788999999999999999999887742 2344444444
Q ss_pred hccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHH
Q 000201 1673 NLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVV 1752 (1866)
Q Consensus 1673 ~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~ 1752 (1866)
+...-.....| .+..+|.+ +..+++.++|++|..|+++++.++... -.+.
T Consensus 1054 ~~~~~~~~~~~---------~v~~gp~k----------------~~vd~~l~~rk~a~~~~~~ll~~~~~~-----i~~~ 1103 (1230)
T 1u6g_C 1054 NETKVRKELIR---------EVEMGPFK----------------HTVDDGLDIRKAAFECMYTLLDSCLDR-----LDIF 1103 (1230)
T ss_dssp HTTSCCGGGEE---------EEEETTEE----------------EEEETHHHHHHHHHHHHHHHHHSSCSS-----SCHH
T ss_pred HHhcccHHhhe---------eeccCCcc----------------cccCCcHHHHHHHHHHHHHHHHHHHHh-----CCHH
Confidence 32221111111 01122321 235677799999999999999987543 2478
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc--Ccchh----------hhhHHHHHHH
Q 000201 1753 DILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD--GSTPV----------RLAAERCAVH 1820 (1866)
Q Consensus 1753 ~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~--~~~~v----------k~aae~a~~~ 1820 (1866)
++++.++.++.|+ .|+|..+...+.++++.+|..+.++++.++.++.+.+.. +..+| ++++.||+.+
T Consensus 1104 ~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~ 1182 (1230)
T 1u6g_C 1104 EFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAA 1182 (1230)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999995 899999999999999999999999999999999887543 33344 4566689999
Q ss_pred hhcccccchhHHHHHHHhh
Q 000201 1821 AFQLTRGSEYIQGAQKFIT 1839 (1866)
Q Consensus 1821 l~~~~~~~~~~~~~~~~~~ 1839 (1866)
+.+++..+ ..+.|.+|+.
T Consensus 1183 l~~~~~~~-~~~~~~~~~~ 1200 (1230)
T 1u6g_C 1183 LLTIPEAE-KSPLMSEFQS 1200 (1230)
T ss_dssp TTSSCSCS-SSSSCCCCCH
T ss_pred HHhCCCcc-cChHHHHHHH
Confidence 98888654 3345555554
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.9e-35 Score=405.39 Aligned_cols=742 Identities=13% Similarity=0.155 Sum_probs=565.0
Q ss_pred hhhhhhhc-CCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh--
Q 000201 369 YSGLFKAL-SHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-- 444 (1866)
Q Consensus 369 ~~~ll~~l-~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~-- 444 (1866)
+..++... .++|+.+|+.|.+.|..+.+. .|+.+ ..+...+. .. +.+.++|+.++..|++....
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~----~~l~~il~----~~----~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFA----GLSSQVLI----DE----NTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHT----CT----TSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHH----HHHHHHHh----CC----CCChHHHHHHHHHHHhhccCcC
Confidence 45677777 899999999999999887654 24433 33333321 11 11468999999999987421
Q ss_pred --------------cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhh
Q 000201 445 --------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEK 509 (1866)
Q Consensus 445 --------------~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~ 509 (1866)
++++....+...++. .+.++++.+|..+..+...+....++ ..|+.+++.+-..+.++.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll~-~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~----- 147 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNALT-ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ----- 147 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-----
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHHH-HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-----
Confidence 444444456666654 57788899999999888777766555 489999998888876521
Q ss_pred hhhHHHHHHHHHHHHhhhhccC----CcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhh-----hHHHHHH
Q 000201 510 YDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSR 578 (1866)
Q Consensus 510 ~~~vr~~av~~l~~i~~~l~~~----~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ 578 (1866)
+..+|+.++.+++.++..+.+. .+....+++.+...+.++ ++.++..+.+|+..++....+. ....+-.
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~ 227 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ 227 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH
Confidence 1578999999999999876543 346788999999999987 8899999999988765443321 1233333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhh--c-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-------
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--Y-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------- 648 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~--~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~------- 648 (1866)
.+..+..++++.+|+.+..+|..++...+. .+.. . .+++.+...+.+. +...|..++..+..+++...
T Consensus 228 ~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 228 VVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334455678899999999999999987642 2211 1 5666666666654 56888899999998887631
Q ss_pred ----------cCchhcHHhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 649 ----------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 649 ----------~~~~p~v~~llp~ll~~~~D-------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
..+.+++..++|.++..+.+ .+..+|.++..++..++..++...++.++|.+.+.+.+++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 385 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhH
Confidence 23456778899999988874 3468999999999999998887667899999999999999999
Q ss_pred HHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhH
Q 000201 712 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT 790 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~v 790 (1866)
|.+++.+++.+++++. +.+..+++.++|.+...++|+++.||.++++++++++..+....
T Consensus 386 r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------------------- 446 (861)
T 2bpt_A 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI------------------- 446 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------------
Confidence 9999999999998875 77888899999999999999999999999999999987654210
Q ss_pred HHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC--CcchhhhHhhhhHHHHHHhcC-
Q 000201 791 KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVD- 867 (1866)
Q Consensus 791 r~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~--~~~l~~~~~~ll~~L~~~l~d- 867 (1866)
...+.+..++|.+.+.+++. +.+|..++.++++++..+++ +..+.+|++.+++.+...+.+
T Consensus 447 ---------------~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 447 ---------------DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp ---------------CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred ---------------CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 00123445667777777665 88999999999999987652 356789999999999999984
Q ss_pred -CCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccC--------------CCHHHHHHHHHHHHHHHHHhChh
Q 000201 868 -PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 868 -~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~--------------~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
.++.+|..++.+++.++...|++ ++..++|.+++.+... .....|..++.+++.++..+|..
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44899999999999999998865 4566777777666531 12346778889999999998875
Q ss_pred ---HHHHHHHHHHHHhccCCh-hHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 000201 930 ---YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 930 ---~l~~ll~~l~~~l~~~~~-~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~ 1005 (1866)
+.+.+++.+...+++.++ .+|+.++.+++.++...|..|.||++.++|.++..+.++++++|..++.++..+...+
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 567888888888888777 8999999999999999999999999999999999998888888888877766665543
Q ss_pred cccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHH
Q 000201 1006 ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1085 (1866)
Q Consensus 1006 ~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~ 1085 (1866)
+.. +.| +.+.+++.
T Consensus 671 ~~~----~~~--------------------------------------------------------------~~~~l~~~ 684 (861)
T 2bpt_A 671 EED----FRR--------------------------------------------------------------YSDAMMNV 684 (861)
T ss_dssp GGG----GHH--------------------------------------------------------------HHHHHHHH
T ss_pred chh----ccc--------------------------------------------------------------hHHHHHHH
Confidence 321 101 11123333
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-----------HHHHHHHHHHHHHHHHH
Q 000201 1086 LYMVRSDV--SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRK 1152 (1866)
Q Consensus 1086 L~~~~~D~--~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-----------~~~R~~A~~~L~~lv~~ 1152 (1866)
++..+.+. +..+|..++.+++.++...+..+.+|++.+++.+...+.... ..+|..++.+++.++..
T Consensus 685 l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 685 LAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 367999999999999998888899999999999998886432 45799999999999988
Q ss_pred hcc------ccccchHHHHhcccCCC----CccchhhHHHHHHHHHHhhchhhHHhhHh-hHHHHHHHhhc---CCcHHH
Q 000201 1153 LGE------RVLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEV 1218 (1866)
Q Consensus 1153 ~~~------~~l~~llp~L~~~L~d~----~~~vr~~a~~~L~~li~~~~~~~l~~~l~-~ll~~l~~~L~---d~~~~v 1218 (1866)
+++ +.++.+++.+...+.|. +..+|..++.+++.+...+++..+.+|++ .+++.+.+.+. +.+.++
T Consensus 765 l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 844 (861)
T 2bpt_A 765 LHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQAT 844 (861)
T ss_dssp TTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHH
Confidence 872 24566677776766663 78899999999999988884456777888 88888877665 567889
Q ss_pred HHHHHHHHHHHHH
Q 000201 1219 RESAGLAFSTLFK 1231 (1866)
Q Consensus 1219 r~~A~~al~~l~~ 1231 (1866)
++.|..+.+.+..
T Consensus 845 ~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 845 KDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887754
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.5e-35 Score=407.24 Aligned_cols=707 Identities=15% Similarity=0.190 Sum_probs=549.0
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh-hc--
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VL-- 445 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~-~~-- 445 (1866)
+..+++...++|+.+|+.|.+.+..+ ...|+.. .++..+... . . + .+..+|+.++..|++... ++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~-~~l~~il~~----~-~--~---~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFN-NYLIFVLTK----L-K--S---EDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHH-HHHHHHHHT----C-T--T---SCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHH-HHHHHHHhc----c-C--C---CChHHHHHHHHHHHHHHHHccCC
Confidence 45667666789999999999999765 3455543 233333321 0 1 1 145899999999998764 33
Q ss_pred -CCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHH
Q 000201 446 -RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 524 (1866)
Q Consensus 446 -~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i 524 (1866)
+++....+...++ .++.|+++.||..+..+...+....+...|+.+++.+-..+.+++ ..+|+.++.+++.+
T Consensus 83 ~~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~------~~~r~~al~~L~~i 155 (852)
T 4fdd_A 83 FPNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSED------YNTCEGAFGALQKI 155 (852)
T ss_dssp CCHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSS------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCC------HHHHHHHHHHHHHH
Confidence 2333334555554 457899999999999998888887788899999998888876532 56899999999999
Q ss_pred hhhhccC------CcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh----hhHHHHHHHHHHHHcCCChhHHHH
Q 000201 525 AKHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRG 594 (1866)
Q Consensus 525 ~~~l~~~------~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~----~~~~~l~~ll~~L~~~~~~~~R~~ 594 (1866)
+...... ...+..+++.+++.+.++++.++..++.++..++..... .....++.++.. ..++++.+|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~-~~d~~~~vr~~ 234 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFAL-AGDEEPEVRKN 234 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHH-HTCCCHHHHHH
T ss_pred HHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-cCCCCHHHHHH
Confidence 9765432 123678999999999999999999999998877644332 234556655553 35678899999
Q ss_pred HHHHHHHHHhhhCcchhhh--cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--hCcCchhcHHhHHHHHHHHc----
Q 000201 595 AAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF---- 666 (1866)
Q Consensus 595 A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~--l~~~~~p~v~~llp~ll~~~---- 666 (1866)
|+.+|..++...+ +.+.. ..+++.+.+.+.+. ++..|..|+..+..+++. ..+.+.|++..++|.++..+
T Consensus 235 a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 235 VCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9999999998653 22222 25777887777764 567888888888888763 22346789999999999887
Q ss_pred -------CC-----------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 667 -------SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 667 -------~D-----------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
+| .+..||.++..+++.++..++...++.++|.+.+.+.+++|++|.+|+.+||.+++++++
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~ 392 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence 44 345789999999999999888766788999999999999999999999999999999998
Q ss_pred hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCc
Q 000201 729 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~ 808 (1866)
.+..+++.++|.+...++|+++.||.+|+++++.++..+.... ..
T Consensus 393 ~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~ 437 (852)
T 4fdd_A 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PD 437 (852)
T ss_dssp HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HH
Confidence 8888999999999999999999999999999999987553110 01
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcC
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g 888 (1866)
+.+..++|.+.+.+.+.++.+|..|+.++++++...+. .+.+|++.+++.+...+.+........+..+++.++...|
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~--~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG 515 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhh
Confidence 23455677777788888899999999999999986543 5889999999999999998888887889999999998877
Q ss_pred CC-----ChhhHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhc--------------
Q 000201 889 EE-----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS-------------- 943 (1866)
Q Consensus 889 ~~-----~~~~l~~~L~~---~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~-------------- 943 (1866)
+. +++.++|.+++ .+.++.. ..+ .++++++.++..+|.. +++.+++.++..+.
T Consensus 516 ~~~~~~~~~~~l~p~l~~~~~~l~d~~~-~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 516 HHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHSCTTCT-THH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhccHHHHHHHHHHHHHHHHhcccccH-HHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 53 67778888874 3443332 244 7889999999999875 44555554443322
Q ss_pred ---cCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---chhchHH
Q 000201 944 ---HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLP 1015 (1866)
Q Consensus 944 ---~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i~~llp 1015 (1866)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++.++.|++++||..+..++..+...++.. .++.++|
T Consensus 594 ~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp 673 (852)
T 4fdd_A 594 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 673 (852)
T ss_dssp TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12567889999999999999999999998 789999999999999999999999999998877654 3456888
Q ss_pred hHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCC--C
Q 000201 1016 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--V 1093 (1866)
Q Consensus 1016 ~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D--~ 1093 (1866)
.+.+.+.++++.+|..++..+|++....+.. + .++...+++.|+..+++ .
T Consensus 674 ~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~---------------------------~-~p~~~~il~~L~~~l~~~~~ 725 (852)
T 4fdd_A 674 ILGTNLNPEFISVCNNATWAIGEISIQMGIE---------------------------M-QPYIPMVLHQLVEIINRPNT 725 (852)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG---------------------------G-GGGTHHHHHHHHHHHTCSSC
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHhhHh---------------------------H-HHHHHHHHHHHHHHhCCCCC
Confidence 8888888888899999999999987554210 0 12334566666655444 3
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHhccccccchHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPI 1164 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~-~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~ 1164 (1866)
...+++.|+.+++.++...|..+.++++.+++.++..+.. .+.+.|..|..++..+++..+....+.+..+
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~ 797 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFF 797 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 5689999999999999999988889999999999998864 5667899999999999998777666665533
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.3e-33 Score=381.94 Aligned_cols=719 Identities=14% Similarity=0.172 Sum_probs=537.0
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHh--c-cccccCCcchhhhHHHHHHHhh
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ--T-TFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~--~-~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
.++++.+|+.|-..|.++- .+|.+...+-.++..+.+.+..+|.....+.. . ..-...+......+.+.+.+.+
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~---~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l 99 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 99 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHT---TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHHHHH---hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999998764 24655544445555445666778853332222 1 1112244556678888899999
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--------Chhh
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--------NFPD 894 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~--------~~~~ 894 (1866)
.+.++.+|..++++++.++..- ....++.+++.+.+.+.++++.+|..+..+++.+++..++. .+..
T Consensus 100 ~~~~~~vr~~~a~~i~~ia~~~-----~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 100 GDSSPLIRATVGILITTIASKG-----ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHT-----TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-----CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 9999999999999999999842 12357889999999999999999999999999999987643 2667
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
++|.+++.+.+ .+..+|..++.+++.++...+.. .++.+++.+...+.++++.+|..++.+|+.++...+..+.+|
T Consensus 175 il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~ 253 (852)
T 4fdd_A 175 MIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253 (852)
T ss_dssp HHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888887764 45679999999998776554432 456788889998999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh-----hcccchhchHHhHhcccC-----------C-----------C
Q 000201 972 LQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVEDGIF-----------N-----------D 1024 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~-----~~~~~i~~llp~l~~~l~-----------d-----------~ 1024 (1866)
++.+++.++..+.|++++||..+++.+..+.+. +-...+..++|.+...+. | .
T Consensus 254 l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~ 333 (852)
T 4fdd_A 254 MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS 333 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------C
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccc
Confidence 999999999999999999999999988877542 112234456666654441 2 4
Q ss_pred chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000201 1025 NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV 1104 (1866)
Q Consensus 1025 ~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~ 1104 (1866)
+|.+|.++...++.+. ..+|.+....+++.+...+.|.++.+|.+|+.+
T Consensus 334 ~~~vr~~a~~~L~~la-------------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 334 DWNLRKCSAAALDVLA-------------------------------NVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp CCCHHHHHHHHHHHHH-------------------------------HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-------------------------------HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5666666666666553 233333444566666666788899999999999
Q ss_pred HHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc----ccccchHHHHhcccCCCCccchhhH
Q 000201 1105 WKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----RVLPSIIPILSRGLKDPSASRRQGV 1180 (1866)
Q Consensus 1105 l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~----~~l~~llp~L~~~L~d~~~~vr~~a 1180 (1866)
++.++.+.+..+.++++.+++.++..+.++++.+|..++.+++.++...+. ..++.+++.+...+.++++.+|..+
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a 462 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAA 462 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988888889999999999999999999999999999999987654 3567888888889999999999999
Q ss_pred HHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHH
Q 000201 1181 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALD 1260 (1866)
Q Consensus 1181 ~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~ 1260 (1866)
+.+++.+...+++. +.+|++.+++.+...+.+.+......+..+++.+....|....
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~---------------------- 519 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN---------------------- 519 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC----------------------
T ss_pred HHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc----------------------
Confidence 99999998877654 7789999999999888766666555566666666655443110
Q ss_pred HHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHHHHHH---HhcCCCCHHHHHHHHHHHhH
Q 000201 1261 GLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL---SAMGDDDMDVQSLAKEAAET 1337 (1866)
Q Consensus 1261 ~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il~~L~---~~l~~~~~~vr~~a~~~l~~ 1337 (1866)
-..|++.++|.++ +.+.+.++.++ .+.++++.
T Consensus 520 --------------------------------------------~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~ 554 (852)
T 4fdd_A 520 --------------------------------------------KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSS 554 (852)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHH
T ss_pred --------------------------------------------cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHH
Confidence 0123333344333 22333333343 34455555
Q ss_pred hhhccch---hcHHHHHHHHHhc-----------------cCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHH
Q 000201 1338 VTLVIDE---EGVESLVSELLKG-----------------VGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTL 1395 (1866)
Q Consensus 1338 l~~~~~~---~~~~~ll~~L~~~-----------------l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L 1395 (1866)
++..++. ++.+.+++.++.. ...++...+..++.+++.++...+..+.+|+ +.+++.+
T Consensus 555 i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l 634 (852)
T 4fdd_A 555 VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM 634 (852)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHH
Confidence 5554433 1223333322211 2233567899999999999988888888887 7899999
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhh
Q 000201 1396 IVLLSDSDSTTVAAAWEALSRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGL 1475 (1866)
Q Consensus 1396 ~~ll~d~~~~v~~~A~~aL~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L 1475 (1866)
+.++.|++..||..++.+++.++...+.+. ..++..++|.+.+.+
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~l~~~lp~l~~~l 679 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKACFQHV-----------------------------------KPCIADFMPILGTNL 679 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGT-----------------------------------GGGHHHHHHHHHHTC
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhhHHH-----------------------------------HHHHHHHHHHHHHHc
Confidence 999999999999999999999986554321 134556778888888
Q ss_pred ccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q 000201 1476 ISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTT 1554 (1866)
Q Consensus 1476 ~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~-~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~ 1554 (1866)
..+..+.|..++.++|.++... +..+.||+..++++|++++.+. .+..++..+..++|.++...+..+.|+++++++.
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~-~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQM-GIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHH-GGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHH
Confidence 7778899999999999999988 5679999999999999999763 2467999999999999999888888999999999
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHh---ccCChhHHHHHHH
Q 000201 1555 FIKCLQDS-TRTVRSSAALALGKLSALSTR-VDPLVGDLLSSL---QVSDAGIREAILT 1608 (1866)
Q Consensus 1555 l~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~-~~~~l~~L~~~l---~~~~~~vr~~~l~ 1608 (1866)
+++.|.+. +.+.|..|..+|+.++...|. +.+.+..++..+ .++.++++..+.+
T Consensus 759 ~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 817 (852)
T 4fdd_A 759 WCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCK 817 (852)
T ss_dssp HHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999864 667899999999999776553 334444444443 3344555544443
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.5e-32 Score=383.24 Aligned_cols=743 Identities=15% Similarity=0.173 Sum_probs=540.7
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh----
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD---- 443 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~---- 443 (1866)
+..++..+.+++..+|+.|++.+..+.+. .|+. +..|+..... .. .+..+|+.++.+|++...
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~----~~~L~~~l~~---~~-----~~~~vR~~a~~~Lk~~i~~~~~ 70 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTF----LVELSRVLAN---PG-----NSQVARVAAGLQIKNSLTSKDP 70 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC---TT-----SCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhH----HHHHHHHHhC---CC-----CCHHHHHHHHHHHHHhccccch
Confidence 45677778899999999999999877643 2333 3333332211 10 135799999999998642
Q ss_pred -----------hcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhh
Q 000201 444 -----------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 444 -----------~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
.+.++....+...++ ..+.++++.+ ..+..+...+....+. .+|+.+++.+...+.++.. +.
T Consensus 71 ~~~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~----~~ 144 (876)
T 1qgr_A 71 DIKAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TE 144 (876)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CH
T ss_pred HhHHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCC----CH
Confidence 122222333444444 3566777777 7777776666555444 8899999999888876310 15
Q ss_pred hHHHHHHHHHHHHhhhhccC--CcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhhh-----HHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQ 582 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~--~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~~-----~~~l~~ll~~ 582 (1866)
.+|..++.+++.++..+.++ .+.++.+++.+...+.++ +..++..+..|+..++....... ...+-..+..
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~ 224 (876)
T 1qgr_A 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (876)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 69999999999999765321 345778889999999887 68899999999887765433211 1222223333
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh-hc-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC------------
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------ 648 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~-~~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~------------ 648 (1866)
+..++++.+|..+..+|..++...+..... .. .+++.+.....+. +...|..++..+..+++...
T Consensus 225 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 446677889999999999999865422111 12 5777777766553 56778888888888876531
Q ss_pred ---------cCchhcHHhHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhH
Q 000201 649 ---------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK 712 (1866)
Q Consensus 649 ---------~~~~p~v~~llp~ll~~~~-------D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r 712 (1866)
....+++..++|.++..+. |.+..+|.++..++..++..++...+..++|.+...+.+++|++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHH
Confidence 1123456788898888875 346789999999999999988866678899999999999999999
Q ss_pred HHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 713 QSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 713 ~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
.+++.+|+.++.+.+ +.+..+++.++|.++..++|+++.||.+|++++++++..+....
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------------------- 443 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA-------------------- 443 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT--------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc--------------------
Confidence 999999999999876 66777889999999999999999999999999999998664210
Q ss_pred HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC------------CCcchhhhHhhhhH
Q 000201 792 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLP 859 (1866)
Q Consensus 792 ~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~------------~~~~l~~~~~~ll~ 859 (1866)
...+.+..++|.+.+.+.+. +.+|..++.++++++...+ ....+.||++.+++
T Consensus 444 --------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~ 508 (876)
T 1qgr_A 444 --------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQ 508 (876)
T ss_dssp --------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHH
T ss_pred --------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHH
Confidence 00123445666666666664 7888888888888887643 12357899999999
Q ss_pred HHHHHhcCC---CHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhccc----------CCC----HHHHHHHHHHH
Q 000201 860 EVKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGL 919 (1866)
Q Consensus 860 ~L~~~l~d~---~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~----------~~~----~~~R~~a~~~L 919 (1866)
.+...+.+. ...+|..+..+++.++...|.+ +...++|.+++.+.. +.+ ...|..++.++
T Consensus 509 ~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 588 (876)
T 1qgr_A 509 KLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHH
Confidence 999999865 4689999999999999999876 344677777666542 111 23466778889
Q ss_pred HHHHHHhC-hh---HHHHHHHHHHHHhccCC--hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC-ChHHHH
Q 000201 920 SEVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRD 992 (1866)
Q Consensus 920 ~~l~~~~g-~~---~l~~ll~~l~~~l~~~~--~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~-~~~VR~ 992 (1866)
+.++..+| .. +++.++|.++..+.+.. +.+|+.++.+++.++...|..|.||++.++|.+...+.+. ++.+|.
T Consensus 589 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 589 QNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999888 44 56788888888887764 5799999999999999999999999999999999998876 788888
Q ss_pred HHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHH
Q 000201 993 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1072 (1866)
Q Consensus 993 ~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~ 1072 (1866)
.+..++..++..++.. +.|
T Consensus 669 ~a~~~l~~l~~~~~~~----~~~--------------------------------------------------------- 687 (876)
T 1qgr_A 669 AAVGLVGDLCRALQSN----IIP--------------------------------------------------------- 687 (876)
T ss_dssp HHHHHHHHHHHHHGGG----GHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHh----hhh---------------------------------------------------------
Confidence 8887777766554321 101
Q ss_pred HhchhhhHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-----------HHHH
Q 000201 1073 VLGRDKRNEVLAALYMVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERR 1139 (1866)
Q Consensus 1073 ~lg~~~~~~vl~~L~~~~~D--~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~-----------~~~R 1139 (1866)
+.+.+++.+...+.+ .+..+|..++.+++.++...+..+.++++.+++.+...+..+. ..+|
T Consensus 688 -----~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 688 -----FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp -----HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 011222222222222 3456889999999999987788888899999999988876442 2788
Q ss_pred HHHHHHHHHHHHHhccc-------------cccchHHHHhcccCCC--CccchhhHHHHHHHHHHhhchhhHHhh-HhhH
Q 000201 1140 QVAGRALGELVRKLGER-------------VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDEL 1203 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~~~-------------~l~~llp~L~~~L~d~--~~~vr~~a~~~L~~li~~~~~~~l~~~-l~~l 1203 (1866)
..+..++..++..++.. .++.+++.+.....++ +..+|..++.+++.++...+...+.+| .+.+
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 842 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPM 842 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHH
Confidence 99999999998887641 2345555555444566 668999999999999888865356666 5677
Q ss_pred HHHHHH-hhcCCcHHHHHHHHHHHHHHHH
Q 000201 1204 IPTIRT-ALCDSILEVRESAGLAFSTLFK 1231 (1866)
Q Consensus 1204 l~~l~~-~L~d~~~~vr~~A~~al~~l~~ 1231 (1866)
++.+.. .+.|+++++|..|+.+++.+.+
T Consensus 843 i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 843 IHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 877777 8899999999999999998865
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-32 Score=379.20 Aligned_cols=751 Identities=12% Similarity=0.118 Sum_probs=558.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC--ChhHHH-HHHHHHhc-ccc------------cc-CCc
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKY-SLDILLQT-TFV------------NT-VDA 808 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~--~~~vr~-al~~L~~~-~~~------------~~-~~~ 808 (1866)
.++++.+|..|...|.++.+. ....+.+.+...+.+. +..+|. |...+-.. ... .. ++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~ 90 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSND----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH
T ss_pred cCcCHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH
Confidence 567889999999999886542 1234555666666543 456774 33333221 100 11 344
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC-CHhHHHHHHHHHHHHHhhc
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l~~~~ 887 (1866)
.....+.+.+...+.+.+..+|..++++++.++..... ...++.+++.+...+.++ ++.+|..++.+++.+.+.+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p----~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP----HGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG----GTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCc----ccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566777888889899999999999999999874211 124678999999999988 9999999999999999977
Q ss_pred CCC------ChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHH
Q 000201 888 GEE------NFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLT 955 (1866)
Q Consensus 888 g~~------~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~ 955 (1866)
+++ +.+.+++.+...+.+.+ +..+|..++.+++.++..++.. ..+.+++.+.+.+.++++.+|..++.
T Consensus 167 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~ 246 (861)
T 2bpt_A 167 DPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFG 246 (861)
T ss_dssp STTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 644 45667787877777652 5679999999998765433321 23457777777888889999999999
Q ss_pred HHHHhhhhhchhhHhHHH-HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc--------------------ccchhchH
Q 000201 956 LFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYA--------------------TTSLPLLL 1014 (1866)
Q Consensus 956 ~l~~L~~~~g~~f~~~l~-~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~--------------------~~~i~~ll 1014 (1866)
++..+....+..|.+|+. .+++.++..+.|.++.+|..+++.+..++.... ...+..++
T Consensus 247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999888776531 11223455
Q ss_pred HhHhcccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHH
Q 000201 1015 PAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1087 (1866)
Q Consensus 1015 p~l~~~l~-------d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~ 1087 (1866)
|.+...+. +++|.+|..+...++.+... +|......+++.+.
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~-------------------------------~~~~~~~~l~~~l~ 375 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-------------------------------CGNHILEPVLEFVE 375 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH-------------------------------HGGGGHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH-------------------------------ccHhHHHHHHHHHH
Confidence 55544432 34577777777777665433 23333445566666
Q ss_pred HhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-----ccccch
Q 000201 1088 MVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-----RVLPSI 1161 (1866)
Q Consensus 1088 ~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~-----~~l~~l 1161 (1866)
..+++.+|.+|++|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..++.+++.++..++. ..++.+
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 66778899999999999999998764 777889999999999999999999999999999999988764 357888
Q ss_pred HHHHhcccCCCCccchhhHHHHHHHHHHhhc---hhhHHhhHhhHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1162 IPILSRGLKDPSASRRQGVCIGLSEVMASAG---KSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1162 lp~L~~~L~d~~~~vr~~a~~~L~~li~~~~---~~~l~~~l~~ll~~l~~~L~--d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
+|.+...+.++ +.+|..+|.++..++..++ +..+.+|++.+++.+...+. |.++.+|..+..+++.+....+..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 99888888876 8899999999999988765 35677899999999999887 445789999999999999887754
Q ss_pred ---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCCchhhHhhHH
Q 000201 1237 ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTIL 1313 (1866)
Q Consensus 1237 ---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~l~~~l~~il 1313 (1866)
.+..++|.+++.|.+....+. ++++.....- ...+......+++.+....|..+.+|++.++
T Consensus 535 ~~~~~~~l~~~l~~~l~~~~~~~~------~i~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 599 (861)
T 2bpt_A 535 VAETSASISTFVMDKLGQTMSVDE------NQLTLEDAQS---------LQELQSNILTVLAAVIRKSPSSVEPVADMLM 599 (861)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTSCG------GGCCHHHHHH---------HHHHHHHHHHHHHHHHHHCGGGTGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhc------ccCChhhHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 244556655554432100000 0000000000 0001112345677788888888899999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHhHhhhccch---hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHH
Q 000201 1314 PALLSAMGDDDM-DVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAP 1389 (1866)
Q Consensus 1314 ~~L~~~l~~~~~-~vr~~a~~~l~~l~~~~~~---~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~ 1389 (1866)
+.++..+.+.+. .+|+.+..+++.++...+. ++++.+++.+...++++++.+|..++.+++.++...+..+.+|.+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 679 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH
Confidence 999999987766 8999999999998876654 457889999999888888999999999999999888888999999
Q ss_pred HHHHHHHHHhCCCC--hhHHHHHHHHHHHHHhcCCcch---hhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCc
Q 000201 1390 NMISTLIVLLSDSD--STTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKAL 1464 (1866)
Q Consensus 1390 ~il~~L~~ll~d~~--~~v~~~A~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l 1464 (1866)
.+++.++..+.+++ ..+|..+..+++.++...+... ++.+++.+.+.+.... |. +
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---------------~~----~- 739 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---------------EN----G- 739 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---------------SS----S-
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC---------------CC----C-
Confidence 99999999998764 8899999999999998766543 3333333333322100 00 0
Q ss_pred cccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC--hhhhhhhhhhhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHh
Q 000201 1465 QPLLPIFLQGLISGSAELREQAALGLGELIEVTS--EQSLKEFVIPITGPLIRIIGDR---FPWQVKSAILSTLSIIIRK 1539 (1866)
Q Consensus 1465 ~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~--~~~l~~~v~~i~~~Li~~l~~~---~~~~vr~~al~~L~~L~~~ 1539 (1866)
+.-.. .....+|..++.+++.++...+ +..+.+|+..+++.+.+.+.+. +++.+|.+++.+++.++..
T Consensus 740 d~d~~-------~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 740 TLEAL-------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp SHHHH-------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHH-------HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 00000 0013478889999999998774 2679999999999998888653 1789999999999999999
Q ss_pred c-CCCCCCchH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Q 000201 1540 G-GIALKPFLP-QLQTTFIKCLQD---STRTVRSSAALALGKLS 1578 (1866)
Q Consensus 1540 ~-~~~~~~~lp-~L~~~l~~~l~d---~~~~vR~~Aa~aLg~L~ 1578 (1866)
+ |..+.+|++ ++++.+++.+.. .+..++..|..+++.+.
T Consensus 813 ~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 813 FPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 9 888999999 999999998873 46789999999999874
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.4e-32 Score=383.38 Aligned_cols=754 Identities=15% Similarity=0.159 Sum_probs=546.2
Q ss_pred hhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC--ChhHHHHHHHHHhccc--------------ccc
Q 000201 742 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTF--------------VNT 805 (1866)
Q Consensus 742 ~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~--~~~vr~al~~L~~~~~--------------~~~ 805 (1866)
+..+.++++.+|..|...|.++... ....+.+.|+..+.++ +..+|.....+..... -..
T Consensus 7 L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 7 LEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhc----ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 3345577899999999999887542 2345666666666553 3567742222221100 012
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSL 883 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l 883 (1866)
........+.+.+.+.+.+.+..+ ..++++++.++.... ...+++.+++.+...+.++ ++.+|..+..+++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~----~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l 157 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC----cccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 334455666777888888877778 889999999987421 1245788999999999998 999999999999999
Q ss_pred HhhcCC----CChhhHHHHHHHhcccCC-CHHHHHHHHHHHHHHHHHhChh----HH-HHHHHHHHHHhccCChhHHhHH
Q 000201 884 IRGMGE----ENFPDLVSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV----YF-EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 884 ~~~~g~----~~~~~l~~~L~~~L~~~~-~~~~R~~a~~~L~~l~~~~g~~----~l-~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
++..++ .+++.+++.+...+.+++ +..+|..++.+++.++..++.. .+ +.+++.+.+.+.+.++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a 237 (876)
T 1qgr_A 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (876)
T ss_dssp HHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 987653 356778888888887653 5678999999998887654432 11 2467777777888899999999
Q ss_pred HHHHHHhhhhhchhhHhHHH-HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc--------------------c----
Q 000201 954 LTLFKYLPRSLGVQFQNYLQ-QVLPAILDGLADENESVRDAALGAGHVLVEHYAT--------------------T---- 1008 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l~-~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~--------------------~---- 1008 (1866)
+.+++.+....+..|.||+. .+++.++..+.+.++++|..+++.+..+...... .
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (876)
T 1qgr_A 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (876)
T ss_dssp HHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHH
Confidence 99999999999999999999 9999999999999999999999888877654210 0
Q ss_pred chhchHHhHhcccC-------CCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHH
Q 000201 1009 SLPLLLPAVEDGIF-------NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1081 (1866)
Q Consensus 1009 ~i~~llp~l~~~l~-------d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~ 1081 (1866)
.+..++|.+...+. +++|++|.++...++.+... .|.+..+.
T Consensus 318 ~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-------------------------------~~~~~~~~ 366 (876)
T 1qgr_A 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-------------------------------CEDDIVPH 366 (876)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-------------------------------HGGGGHHH
T ss_pred HHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHH-------------------------------CcHhhHHH
Confidence 11234444433331 45677777777777666433 22233445
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-----
Q 000201 1082 VLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE----- 1155 (1866)
Q Consensus 1082 vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~----- 1155 (1866)
+++.+...+.|.+|.+|.+|+.+++.++...+ ..+.++++.+++.++..+.++++.+|..|+.+++.++...+.
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 66666666789999999999999999998765 667788999999999999999999999999999999988764
Q ss_pred ccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhc-------------hhhHHhhHhhHHHHHHHhhcCC---cHHHH
Q 000201 1156 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG-------------KSQLLSFMDELIPTIRTALCDS---ILEVR 1219 (1866)
Q Consensus 1156 ~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~-------------~~~l~~~l~~ll~~l~~~L~d~---~~~vr 1219 (1866)
..++.+++.+...+.++ +.+|..++.+++.++..++ +..+.+|++.+++.+...+.+. +..+|
T Consensus 447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 45678888888888875 8889999999999887654 1246789999999999988765 45789
Q ss_pred HHHHHHHHHHHHHhchh---hHhhHHHHHHHhccCCCchhHHHHHHHHHhhcccc---ccchhhhhhhhcCCccchhHHH
Q 000201 1220 ESAGLAFSTLFKSAGMQ---AIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTT---AVLPHILPKLVHLPLSAFNAHA 1293 (1866)
Q Consensus 1220 ~~A~~al~~l~~~~g~~---~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~---~ilp~Lip~L~~~~~~~~~~~a 1293 (1866)
..+.++++.+....|.. .+..++|.+++.+.. .+..... .--+...+. +......+
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-------------~~~~~~~~~~~~d~~~~~~-----~~~~~~~~ 587 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ-------------VLQMESHIQSTSDRIQFND-----LQSLLCAT 587 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH-------------HHTTTTSCCSTTHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHH-------------HHHHHhccCChhhHHHHHH-----HHHHHHHH
Confidence 88999999998877753 233455555544421 0000000 000000000 00112345
Q ss_pred HHHHHHHhC-CCchhhHhhHHHHHHHhcCCCC--HHHHHHHHHHHhHhhhccch---hcHHHHHHHHHhccCCC-chhHH
Q 000201 1294 LGALAEVAG-PGLNFHLGTILPALLSAMGDDD--MDVQSLAKEAAETVTLVIDE---EGVESLVSELLKGVGDN-QASIR 1366 (1866)
Q Consensus 1294 l~~La~~~g-~~l~~~l~~il~~L~~~l~~~~--~~vr~~a~~~l~~l~~~~~~---~~~~~ll~~L~~~l~~~-~~~vR 1366 (1866)
++.+....| ..+.+|++.++|.++..+.+.. ..+++.+..+++.++...+. ++++.+++.+...+.+. ++.+|
T Consensus 588 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr 667 (876)
T 1qgr_A 588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC 667 (876)
T ss_dssp HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 666776778 7888999999999999998764 47899999999998876543 45788888888888775 78999
Q ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcCCcch---hhhhHHHHHHHHhhhh
Q 000201 1367 RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKEV---QPSYIKVIRDAISTSR 1441 (1866)
Q Consensus 1367 ~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~A~~aL~~l~~~~~~~~---l~~l~~~l~~~l~~~~ 1441 (1866)
..++.+++.++...+..+.+|.+.+++.++..+.+ .+..++..+..+++.++...+.+. ++.+++.+.+.+....
T Consensus 668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~ 747 (876)
T 1qgr_A 668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQV 747 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccC
Confidence 99999999999877788999999999999999986 467899999999999987665442 3333333333221000
Q ss_pred hhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh---------hhhhhhhhhhhHH
Q 000201 1442 DKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE---------QSLKEFVIPITGP 1512 (1866)
Q Consensus 1442 ~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~---------~~l~~~v~~i~~~ 1512 (1866)
+ .. + +-..+. ...+|..+..+++.++...+. ..+.||++.+++.
T Consensus 748 --------~-----------~~-d---~~~~~~----~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 800 (876)
T 1qgr_A 748 --------D-----------KS-D---YDMVDY----LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSF 800 (876)
T ss_dssp --------C-----------TT-C---HHHHHH----HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHH
T ss_pred --------C-----------CC-C---hHHHHH----HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHH
Confidence 0 00 0 000000 125777888888888776532 4688999999877
Q ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHHHhcCC-CCCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 000201 1513 LIRIIGDRF-PWQVKSAILSTLSIIIRKGGI-ALKPF-LPQLQTTFIK-CLQDSTRTVRSSAALALGKLSALS 1581 (1866)
Q Consensus 1513 Li~~l~~~~-~~~vr~~al~~L~~L~~~~~~-~~~~~-lp~L~~~l~~-~l~d~~~~vR~~Aa~aLg~L~~~~ 1581 (1866)
+.....+.. +..+|..++.+|+.++...|. .+.+| .+++++.+++ ++.|+++.+|..|+.++|.+..+.
T Consensus 801 l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 801 IDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 777666543 689999999999999999988 77777 5778888888 999999999999999999997654
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2.5e-33 Score=372.18 Aligned_cols=565 Identities=18% Similarity=0.223 Sum_probs=446.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
.+..++..+ .++++.+|..|+..+..++...|+... ...++++|.+.. ++++..|..+..+++.+....+. ..+
T Consensus 11 ~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~ 84 (588)
T 1b3u_A 11 PIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEY 84 (588)
T ss_dssp HHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGG
T ss_pred cHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHH
Confidence 355666666 456789999999999999887776554 346889988766 34567888888877766655443 346
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
...++|.+.....|++..||..|.+++..++..+++..+ +.++|.+.+...+++|..|..++.+++.++...+...
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--- 161 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--- 161 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH---
Confidence 778999998888999999999999999999999888766 5677777777788899999999999999988876543
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhh
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 813 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~ 813 (1866)
.+.++|.+..+++|+++.||.+|+.+|+.+++.++.+.+ ...
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--------------------------------------~~~ 203 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--------------------------------------KSE 203 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------HHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--------------------------------------HHH
Confidence 457889999999999999999999999999987654221 123
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-h
Q 000201 814 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 892 (1866)
Q Consensus 814 l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~ 892 (1866)
++|.+...++|.++.+|..|+..++.++..++. ..+.+.++|.+...+.|++|.+|..++.+++.++...|++. .
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 455555555666677777777777777765432 23445677888888888888888888888888888776542 3
Q ss_pred hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 893 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 893 ~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-----~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
+.++|.+...+.+ .++.+|..++.+++.++..+|.+ +++.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 5677777776654 44568888888888888877754 56778888888889999999999999999999999875
Q ss_pred hHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccc-hhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~-i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
. +.+.++|.+...+.|++++||..++.++..+...++... .+.++|.+...+.|++|++|..+++.++.+...++
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-- 434 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-- 434 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--
Confidence 4 467788999999999999999999999998887765432 35688998888899999999999999998764432
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhh-hHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1125 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~-~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~ 1125 (1866)
.+. .+.+++.+...+.|.++.||..|+.+++.++...+.. .+++.+++
T Consensus 435 -----------------------------~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 435 -----------------------------VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp -----------------------------GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 111 1346667777788999999999999999998765542 24567777
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHH
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1204 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll 1204 (1866)
.+...+.++++.+|..++.+++.++..++.. +.+.++|.+...+.|+++++|..++.+++.+....++... .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 7777788899999999999999999888765 5688999999999999999999999999999877665432 25778
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHH
Q 000201 1205 PTIRTALCDSILEVRESAGLAFSTL 1229 (1866)
Q Consensus 1205 ~~l~~~L~d~~~~vr~~A~~al~~l 1229 (1866)
|.+...+.|.+++||..|..+++.+
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHh
Confidence 8888888999999999999998765
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.1e-30 Score=346.82 Aligned_cols=557 Identities=17% Similarity=0.203 Sum_probs=452.5
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcchHHH
Q 000201 460 RALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 538 (1866)
Q Consensus 460 ~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l 538 (1866)
..+.++++.+|..+......+....|. ..++.++|.+...++ . ++.+|..+...++.++.+++.. .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d---~----~~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY---D----EDEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCC---C----CHHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcC---C----cHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 356789999999998887776665554 456788888876641 1 1579999999999888776543 346778
Q ss_pred HHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchH
Q 000201 539 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 617 (1866)
Q Consensus 539 ~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii 617 (1866)
++.+...+.++++.++..+..++..+..... +.....+..++..+.+++++..|..|+..++.++...+... ...++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 8888887888889999999999887776554 22344555667777778888899999999999887765432 24688
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-HhH
Q 000201 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 696 (1866)
Q Consensus 618 ~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-~~l 696 (1866)
+.+.+.+.++ ++.+|..|+.+++.+++..+. +.+...++|.+...+.|+++.||..|..++..++..+++... +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888887764 689999999999999988774 355678999999999999999999999999999998887654 778
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch-----h
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----E 771 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~-----~ 771 (1866)
+|.+...+++++|++|..++.+|+.++...+... ..+.++|.+.++++|+++.||..|+++|+.++..++.. .
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 9999999999999999999999999998754432 34578999999999999999999999999999887643 4
Q ss_pred HHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcch
Q 000201 772 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 850 (1866)
Q Consensus 772 i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l 850 (1866)
...++|.+...+.|+++.+|. ++..+......- ........++|.+...++|.++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH----
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH----
Confidence 578999999999999999985 333333311000 01123467889999999999999999999999999876532
Q ss_pred hhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCCh-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh
Q 000201 851 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 929 (1866)
Q Consensus 851 ~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~ 929 (1866)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.++|.++..+.+ ....+|..++.+++.++..+|.+
T Consensus 397 ~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~ 475 (588)
T 1b3u_A 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKFGKE 475 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch
Confidence 234577899999999999999999999999999999987744 5788988888765 44669999999999999999987
Q ss_pred -HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 930 -YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 930 -~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
+.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..+.+++..+...++..
T Consensus 476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 553 (588)
T 1b3u_A 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553 (588)
T ss_dssp HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh
Confidence 557889999988888999999999999999999998764 88999999999999999999999999999998877655
Q ss_pred ch-hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1009 SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1009 ~i-~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.. +.++|.+.....|.+|.+|..+.+.++.+
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 43 45788888888999999999999888764
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=1.1e-22 Score=266.95 Aligned_cols=312 Identities=26% Similarity=0.471 Sum_probs=282.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC--cC
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 650 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~--~~ 650 (1866)
...+..+++.+..++ ...|+.++..++.++.+.+........++..+.+.+.++++. ++|+.++..|++..+ ..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 13 IKVLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 344555666666544 578899999999998865433332357888999999988766 999999999997665 46
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChhh
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ 729 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~~ 729 (1866)
++||+..++|.++..+.|....||++|..++..++..++++.++.++|.++.+|.+. .|+.|.+|+.+++.+++.+|++
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 899999999999999999999999999999999999999999999999999999765 6999999999999999999999
Q ss_pred HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcc
Q 000201 730 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP 809 (1866)
Q Consensus 730 ~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~ 809 (1866)
+...+|+++|.+..++.|.+++|..+|..++..++..+.|..+..++|.|++++.+| +.+.+|+..|.+++|+..++.|
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~~~~~~~~l~~~tfv~~v~~~ 247 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTFVAEVTPA 247 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-THHHHHHHHHTTCCCCSCCCHH
T ss_pred HHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hhhHHHHHHhhcCeeEeeecch
Confidence 999999999999999999999999999999999999999999999999999999999 4588999999999999999999
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcC
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMG 888 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g 888 (1866)
.++.++|.|.++|++++..++++++-++.|||+.+.++.+..+|++.++|++.+.... .+|++|+.+.+++..+.+..+
T Consensus 248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999997763 679999999999999988655
Q ss_pred C
Q 000201 889 E 889 (1866)
Q Consensus 889 ~ 889 (1866)
.
T Consensus 328 ~ 328 (986)
T 2iw3_A 328 V 328 (986)
T ss_dssp C
T ss_pred c
Confidence 4
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=1.2e-17 Score=232.44 Aligned_cols=710 Identities=10% Similarity=0.106 Sum_probs=420.4
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh-cC-
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR- 446 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~-~~- 446 (1866)
+..++....++++.+| |.+.|..+ +..|+.+..++.-+. . .. .+.++|..+++.|++.... +.
T Consensus 7 l~~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~----~---~~-----~~~~vR~~A~i~lkn~i~~~w~~ 71 (960)
T 1wa5_C 7 VAKFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIA----S---TN-----LPLSTRLAGALFFKNFIKRKWVD 71 (960)
T ss_dssp HHHHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHH----C---TT-----SCHHHHHHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHh----c---CC-----CCHHHHHHHHHHHHHHHHhcCCC
Confidence 4566766778888888 77777666 667876644333331 1 11 1357999999999987653 33
Q ss_pred --------CCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHH
Q 000201 447 --------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVV 518 (1866)
Q Consensus 447 --------~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av 518 (1866)
+++...+-..++.... +.+..||..+..+...+.....++.|+.+++.+-..+++++ ...+.+++
T Consensus 72 ~~~~~~l~~~~k~~ik~~ll~~l~-~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~------~~~~~~aL 144 (960)
T 1wa5_C 72 ENGNHLLPANNVELIKKEIVPLMI-SLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDD------MVTNKGVL 144 (960)
T ss_dssp SSSCBSSCHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSC------TTHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCC------HHHHHHHH
Confidence 2222334445544333 33488999999888888777667899999998888876532 34678899
Q ss_pred HHHHHHhhhhcc--CC----cc----hHHHHHHHHH-------hcCCCcHH---HH------HHHHhhhhhhhH-hhh--
Q 000201 519 IFTGALAKHLAK--DD----PK----VHAVVDKLLD-------VLNTPSEA---VQ------RAVSSCLSPLMQ-SMQ-- 569 (1866)
Q Consensus 519 ~~l~~i~~~l~~--~~----~~----~~~l~~~l~~-------~l~~~~~~---v~------~~~~~~l~~lv~-~~~-- 569 (1866)
.++..+++.+.. .. +. +...++.++. .+.++... ++ ..+++++..+.. ...
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 999999976542 11 01 2223332222 24443221 22 223333322211 001
Q ss_pred --hhhHHHHHHHHHHHHcC----------CC----hhHHHHHHHHHHHHHhhhCcchhhh--cchHHHHHHHHh----CC
Q 000201 570 --DEAPTLVSRLLDQLMKS----------DK----YGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLA----DR 627 (1866)
Q Consensus 570 --~~~~~~l~~ll~~L~~~----------~~----~~~R~~A~~~L~~l~~~~g~~~l~~--~~ii~~L~~~i~----~~ 627 (1866)
+.....++.++.-+... .+ +..|+.+..++..++...+ +.+.. ..+++.+.+.+. ..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-~~f~~~~~~~~~~~~~~l~~~~~~~ 303 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-DVFGPMINEFIQITWNLLTSISNQP 303 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHCCSCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 12233333233323210 00 3467888888888876543 22211 134444444443 12
Q ss_pred CcHHHHHHHHHHHHHHHHHh--CcCch--hcHHhHH-HHHHHHcC-----------------------CCCHHHHHHHHH
Q 000201 628 NSAKRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAEC 679 (1866)
Q Consensus 628 ~~~~~r~~al~al~~L~~~l--~~~~~--p~v~~ll-p~ll~~~~-----------------------D~~~~VR~~a~~ 679 (1866)
.+...+..++..+..+++.. ...|. +++.+++ +.++..+. +....+|.+|..
T Consensus 304 ~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 304 KYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp TSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHH
Confidence 33455666666666665432 23454 7888777 56666542 112368999999
Q ss_pred HHHHHHHhhcHhhHHhHHHHHHhhcC------CCChhhHHHHHHHHHHHHhhC--hh-hHHh-----hhcch-hHHHhhh
Q 000201 680 AARAMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEV 744 (1866)
Q Consensus 680 al~~i~~~l~~~~v~~llp~L~~~L~------~~~w~~r~~a~~~L~~l~~~~--~~-~~~~-----~l~~i-v~~l~~~ 744 (1866)
++..++...+...++.+++.+.+.+. +.+|+.|.+|+.++|.++.+. .+ .... .+..+ ...+...
T Consensus 384 ~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~ 463 (960)
T 1wa5_C 384 FLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD 463 (960)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH
Confidence 99999998875556777887777776 678999999999999998642 11 1111 12222 2234455
Q ss_pred ccCC---ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHh
Q 000201 745 LTDT---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRG 821 (1866)
Q Consensus 745 L~D~---~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~ 821 (1866)
++|+ +|.||..|++++++++..+....+.. ++|.+.++
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~---------------------------------------~l~~l~~~ 504 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE---------------------------------------LMPILATF 504 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH---------------------------------------HHHHHHHH
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhCCHHHHHH---------------------------------------HHHHHHHH
Confidence 6777 99999999999999998763222333 44445555
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhcC---------CCcchhhhHhhhhHHHHHHhcCCC---H--hHHHHHHHHHHHHHhhc
Q 000201 822 LRERSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 822 l~d~~~~vr~~a~~~l~~l~~~l~---------~~~~l~~~~~~ll~~L~~~l~d~~---~--~vR~~a~~aL~~l~~~~ 887 (1866)
+.+.+..||..|+.++.+++.... ....+.||++.+++.|..++.... . .....+..+++.++...
T Consensus 505 L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 505 LQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS 584 (960)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence 556667888999999999987432 235688999999999999988741 1 13467899999999988
Q ss_pred CCC---ChhhHHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHHHHH
Q 000201 888 GEE---NFPDLVSWLLDALK----SDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTL 956 (1866)
Q Consensus 888 g~~---~~~~l~~~L~~~L~----~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~al~~ 956 (1866)
+++ |+..+++.+...+. +..+...+...+.+++.++...+.+ ..+.++|.+...+........+.++..
T Consensus 585 ~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i 664 (960)
T 1wa5_C 585 EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664 (960)
T ss_dssp TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 866 55566666665543 3344556667889999998886654 445677777776666656677778888
Q ss_pred HHHhhhhhchhhHhHHHHHHHHHH--hhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHH
Q 000201 957 FKYLPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1034 (1866)
Q Consensus 957 l~~L~~~~g~~f~~~l~~il~~ll--~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ 1034 (1866)
+..+.... ..|.+|+..++|.++ ..+.... .+ ....+.+..++...+.. ++ . +
T Consensus 665 ~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~--------~--~-------- 719 (960)
T 1wa5_C 665 IAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FP--------D--L-------- 719 (960)
T ss_dssp HHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CS--------C--S--------
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HH--------H--H--------
Confidence 88777666 667778888888777 5544321 22 12222222222211110 00 0 0
Q ss_pred HHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChh
Q 000201 1035 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1035 ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
+.++..+.....+.. .+..|..+++.++.+.|.
T Consensus 720 ---------------------------------------------~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~ 752 (960)
T 1wa5_C 720 ---------------------------------------------VPVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDM 752 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCH
T ss_pred ---------------------------------------------HHHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCH
Confidence 001111111112222 237788899999988887
Q ss_pred h-HHHhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHHhccccc--------cc-hHH----HHhcccCC-CCccchh
Q 000201 1115 T-LKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL--------PS-IIP----ILSRGLKD-PSASRRQ 1178 (1866)
Q Consensus 1115 ~-l~~~l~~l~~~L~~~l~~~-~~~~R~~A~~~L~~lv~~~~~~~l--------~~-llp----~L~~~L~d-~~~~vr~ 1178 (1866)
. +.+|+|.+++.++..+... ....+...+..++.++...++... +. +.. .+...+.. ....-|.
T Consensus 753 ~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk 832 (960)
T 1wa5_C 753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRK 832 (960)
T ss_dssp HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHH
Confidence 7 9999999999999998755 455665666666665555444211 11 111 11111111 2234566
Q ss_pred hHHHHHHHHHHhh--chhhHHhhHhhHHHHHHHhhc
Q 000201 1179 GVCIGLSEVMASA--GKSQLLSFMDELIPTIRTALC 1212 (1866)
Q Consensus 1179 ~a~~~L~~li~~~--~~~~l~~~l~~ll~~l~~~L~ 1212 (1866)
-++.++..++... .+....+.+..++..+...+.
T Consensus 833 ~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~ 868 (960)
T 1wa5_C 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETAS 868 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHh
Confidence 6777777766543 022333445555555555443
No 13
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.86 E-value=3.2e-18 Score=239.67 Aligned_cols=718 Identities=13% Similarity=0.125 Sum_probs=416.2
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcCCcc
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYDF 365 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~~~~ 365 (1866)
..+.++|+.+++||+..|++|++.|+++. .+ |....+...+. ..+.+..+|-.| ...|.....+-
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~---~~--p~~w~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAE---AS--PQAWQFSWQLM--QLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTT---TS--THHHHHHHHHT--CTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---cC--HHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 34667788889999999999999999875 11 21222222222 234455555433 35687655444
Q ss_pred CCCh-hhhhhhcCC---CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 000201 366 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 440 (1866)
Q Consensus 366 ~~~~-~~ll~~l~~---~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~ 440 (1866)
...+ ..+++.+.+ ....+|.+.+++++.+... || .|++.+..+++..... .. +..+ +...+......|..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~--~~-~~~~-~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQ--RM-PNVS-ADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHT--C-----C-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcc--cc-ccCC-CHHHHHHHHHHHHH
Confidence 4445 566665544 3589999999999998644 66 6666667776554221 00 0000 11245555555555
Q ss_pred hhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCC--ChhhhhhHHHHHH
Q 000201 441 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 518 (1866)
Q Consensus 441 ~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~--~~~~~~~vr~~av 518 (1866)
+++.+ +.+ . -.++...++.. + ..+.+.++++|..++..... .++....++..++
T Consensus 155 l~EEi--------~~~---~-~~~~r~~~~~~--------l----~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEA--------QVI---H-TSVKRVVLRAE--------I----AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHH--------HHC---C-CSSCHHHHHHH--------H----HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHH--------hcc---C-cHHHHHHHHHH--------H----HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 54321 100 0 01111112111 1 12345666667666653221 1111236888888
Q ss_pred HHHHHHhh--hhccCCcchHHHHHHHHHhc----------------CCCcHHHHHHHHhhhhhhhHhhh-h----hhHHH
Q 000201 519 IFTGALAK--HLAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-D----EAPTL 575 (1866)
Q Consensus 519 ~~l~~i~~--~l~~~~~~~~~l~~~l~~~l----------------~~~~~~v~~~~~~~l~~lv~~~~-~----~~~~~ 575 (1866)
.++..... .++.. ....+++.++. + .+++++++..+++|+..++.... . .....
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 88877665 23322 23456666665 4 11456889999999888775321 1 12222
Q ss_pred HHHHHH---HH---HcCCCh---hHHHHHHHHHHHHHhhhCcchh-------------hhcchHHHHHHHHhC----CCc
Q 000201 576 VSRLLD---QL---MKSDKY---GERRGAAFGLAGVVKGFGISSL-------------KKYGIAATLREGLAD----RNS 629 (1866)
Q Consensus 576 l~~ll~---~L---~~~~~~---~~R~~A~~~L~~l~~~~g~~~l-------------~~~~ii~~L~~~i~~----~~~ 629 (1866)
++.++. .+ ..+++. ...+..+..+..+.... ...+ ....+++.|.+.... ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 366 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH-STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE 366 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence 322222 11 122332 44555555555554321 1111 011355555555433 234
Q ss_pred HHHHHHHHHHHHHHHHHh-C-----------cCchhcHHhHHHHHHHHcCCCC---------------HHHHHHHHHHHH
Q 000201 630 AKRREGALLAFECLCEKL-G-----------RLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAAR 682 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l-~-----------~~~~p~v~~llp~ll~~~~D~~---------------~~VR~~a~~al~ 682 (1866)
......++..+..+++.. . ..+.|++..+++.++..+.-++ ...|.++.+++.
T Consensus 367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~ 446 (971)
T 2x1g_F 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM 446 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence 456777777777777632 1 2346778888888887763221 257888999999
Q ss_pred HHHHhhcHhhHHhHHHHHHhhcCC-----CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc-cCCChHHHHHH
Q 000201 683 AMMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAG 756 (1866)
Q Consensus 683 ~i~~~l~~~~v~~llp~L~~~L~~-----~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L-~D~~~~VR~aA 756 (1866)
.++..++...+..+++.+.+.+.+ .+|+.|.+++.+++.+++++.......++.+++.+..+. .|.++.||..+
T Consensus 447 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 447 YCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 998877755557777777766654 789999999999999999988766677788888544444 26799999999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQI 836 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~ 836 (1866)
+++++++++++.+. + ..+..++|.+.+++ + +.++..|+.+
T Consensus 527 ~~~l~~~~~~l~~~---------------~----------------------~~l~~vl~~l~~~l-~--~~v~~~A~~a 566 (971)
T 2x1g_F 527 LETMGSYCNWLMEN---------------P----------------------AYIPPAINLLVRGL-N--SSMSAQATLG 566 (971)
T ss_dssp HHHHHHTHHHHC-----------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHH
T ss_pred HHHHHHHHHHHhcC---------------H----------------------HHHHHHHHHHHHHh-C--hHHHHHHHHH
Confidence 99999999876521 0 12233445555555 2 4678889999
Q ss_pred HHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcc----cC
Q 000201 837 VGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SD 906 (1866)
Q Consensus 837 l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~----~~ 906 (1866)
+.++++.. ...+.||++.++..+...+.. .....+..+..+++.++...+++ ++..+++.++..+. +.
T Consensus 567 l~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 644 (971)
T 2x1g_F 567 LKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQAD 644 (971)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999854 357889999999999999987 35789999999999999987633 44555555554332 22
Q ss_pred C-CHHHHHH---HHHHHHHHHHHhCh------------h----HHHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhh
Q 000201 907 N-SNVERSG---AAQGLSEVLAALGT------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSL 964 (1866)
Q Consensus 907 ~-~~~~R~~---a~~~L~~l~~~~g~------------~----~l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~ 964 (1866)
. +...+.. ....|+.++..++. + +++.++|.+...+.. .+..+.+.++.+++.++..+
T Consensus 645 ~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 645 SKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 1 2223333 33445555555542 1 345677766666543 36789999999999999999
Q ss_pred chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhc
Q 000201 965 GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1044 (1866)
Q Consensus 965 g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~ 1044 (1866)
|.+|.||++.+++.++..+..... ..++..+..++..++... .++....+++..+..
T Consensus 725 ~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~-----------------~~~~~l~~~~~~~~~--- 781 (971)
T 2x1g_F 725 RSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE-----------------GCKPLMQQLLREFIQ--- 781 (971)
T ss_dssp HC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC----------------------HHHHHHHHHHHH---
T ss_pred hhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc-----------------chHHHHHHHHHHHHH---
Confidence 999999999999999988765322 235555555555443310 000000011111100
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHhhcChhhHH--Hh
Q 000201 1045 GTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV---RSDVSLSVRQAALHVWKTIVANTPKTLK--EI 1119 (1866)
Q Consensus 1045 ~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~---~~D~~~~vR~~A~~~l~~l~~~~p~~l~--~~ 1119 (1866)
.++..+... ..+..+.+++.....+..+..+.|..+. +.
T Consensus 782 ------------------------------------~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~ 825 (971)
T 2x1g_F 782 ------------------------------------HSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTL 825 (971)
T ss_dssp ------------------------------------HHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTS
T ss_pred ------------------------------------HHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcc
Confidence 000000000 0112467899999999999998887664 56
Q ss_pred -HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 000201 1120 -MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1152 (1866)
Q Consensus 1120 -l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~ 1152 (1866)
++.+++..+..+..++.....+++.++..++..
T Consensus 826 ~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 826 AYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp CHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 788888888888777766677788888887655
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.86 E-value=2.6e-17 Score=230.74 Aligned_cols=712 Identities=13% Similarity=0.161 Sum_probs=431.8
Q ss_pred hhHHHHHhh-hcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcCCc
Q 000201 294 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYGYD 364 (1866)
Q Consensus 294 ~~~~~~l~~-~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~~~ 364 (1866)
.++.++|++ ..+||+..|++|++.|+++. .++ ....+...+. ..+.+..+|..| ...|.....+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~---~~p--~~~~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQ---VSP--QAWHFSWQLL--QPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HST--THHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCH--HHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 346677777 45799999999999998865 111 1122222221 224455555433 3568765544
Q ss_pred cCCCh-hhhhhhcCC---CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHH
Q 000201 365 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 439 (1866)
Q Consensus 365 ~~~~~-~~ll~~l~~---~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~ 439 (1866)
-...+ ..+++.+.+ ....+|.+.+.+++.+.. .||+.|++.+..+.+.... ..+. ..+...+......|.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~----~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA----EDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh----hccC-CCcHHHHHHHHHHHH
Confidence 44445 566665544 368999999999999864 4676677777777664311 0000 001123444555555
Q ss_pred HhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHH
Q 000201 440 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 519 (1866)
Q Consensus 440 ~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~ 519 (1866)
.+++.+..... ..-|+. .++..=..+.+.+++.|..++....+. ..++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~-------~~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKG-------LVRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Confidence 55432111100 001110 001000234577888888888653321 247777888
Q ss_pred HHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-hhhHHHHHHHHHHHH----------cCCC
Q 000201 520 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLM----------KSDK 588 (1866)
Q Consensus 520 ~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~~~~~~l~~ll~~L~----------~~~~ 588 (1866)
++..... ++........+++.+++.+.+ ++++..+++|+..++.... ......+..++..+. ..++
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQD--SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTTS--TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhCC--chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 7765443 222111126677888877754 4588888899887765321 112233333333222 1233
Q ss_pred hhHHHHHHHHHHHHHhhhCcchh--------hhcchHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHh---------
Q 000201 589 YGERRGAAFGLAGVVKGFGISSL--------KKYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL--------- 647 (1866)
Q Consensus 589 ~~~R~~A~~~L~~l~~~~g~~~l--------~~~~ii~~L~~~i~~----~~~~~~r~~al~al~~L~~~l--------- 647 (1866)
....+..+..+..+..... ..+ ....+++.+.+.... ..++.....++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 380 (963)
T 2x19_B 302 METSHGICRIAVALGENHS-RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQA 380 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhH
Confidence 3444444555554443211 111 011455566555553 123345666677777777632
Q ss_pred --CcCchhcHHhHHHHHHHHcCCCCH---------------HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc----CC
Q 000201 648 --GRLFEPYVIQMLPLLLVAFSDQVV---------------AVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----ED 706 (1866)
Q Consensus 648 --~~~~~p~v~~llp~ll~~~~D~~~---------------~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L----~~ 706 (1866)
...+.|++.++++.++..+.-++. ..|.++.+++..++...+...+..+++.+.+.+ .+
T Consensus 381 ~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 460 (963)
T 2x19_B 381 VYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP 460 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC
Confidence 134567888888888877643221 347788888988888777666677777777777 67
Q ss_pred CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC
Q 000201 707 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786 (1866)
Q Consensus 707 ~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~ 786 (1866)
.+|+.|.+++.++|.+++++.......++.+++.+..+ .++++.||..++++++++++++...
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~---------------- 523 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADH---------------- 523 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHC----------------
T ss_pred CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 89999999999999999997765555667777765544 4468999999999999998765321
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
...+..+++.+...+.+ +.++..|+.++.+++... .+.+.||++.+++.+...+.
T Consensus 524 ---------------------~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 524 ---------------------PVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp ---------------------HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhc
Confidence 01223345555555544 578889999999999854 35688999999999999887
Q ss_pred C--CCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcc----cCCCHHHH---HHHHHHHHHHHHHhCh-----
Q 000201 867 D--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----SDNSNVER---SGAAQGLSEVLAALGT----- 928 (1866)
Q Consensus 867 d--~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~----~~~~~~~R---~~a~~~L~~l~~~~g~----- 928 (1866)
. -....|..+..+++.++...+++ ++..+++.+.+.+. +..+...+ .....+|+.+++.++.
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~ 658 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHED 658 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 5 35789999999999999877622 45566665555443 22223233 3556777888887762
Q ss_pred ----------------h----HHHHHHHHHHHHhcc--CChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccC-
Q 000201 929 ----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD- 985 (1866)
Q Consensus 929 ----------------~----~l~~ll~~l~~~l~~--~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d- 985 (1866)
+ .++.++|.+...+.. .++.+.+.++.+++.++..+|..|.||++.+++.++.....
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 659 DHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS
T ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC
Confidence 1 345566665555432 46789999999999999999999999999998887775433
Q ss_pred CChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHH
Q 000201 986 ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 986 ~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~ 1065 (1866)
..+ ..+..+..++..++... .+.|
T Consensus 739 ~~~----~~l~l~~~li~~f~~~~--~~~~-------------------------------------------------- 762 (963)
T 2x19_B 739 PQA----SALDLTRQLVHIFAHEP--AHFP-------------------------------------------------- 762 (963)
T ss_dssp CCH----HHHHHHHHHHHHHTTCT--TTCH--------------------------------------------------
T ss_pred Ccc----HHHHHHHHHHHHhCCCc--chHH--------------------------------------------------
Confidence 111 12233333333221110 0000
Q ss_pred HHHHHHHHhchhhhHHHHHHHHH---hcCCCcHHHHHHHHHHHHHHhhcChhhHH--Hh-HHHHHHHHHHhhcCCCHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYM---VRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNTLISSLASSSSERR 1139 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~---~~~D~~~~vR~~A~~~l~~l~~~~p~~l~--~~-l~~l~~~L~~~l~~~~~~~R 1139 (1866)
.+.+. .+.++..++. ..-+..+.+|+.....+..+..+.|..+- +. ++.+++.++..+...+..+.
T Consensus 763 ---~~~~~-----l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 834 (963)
T 2x19_B 763 ---PIEAL-----FLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTV 834 (963)
T ss_dssp ---HHHHH-----HHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHH
T ss_pred ---HHHHH-----HHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHH
Confidence 00000 0011111111 11123578999999999999988886542 34 78888888888998899999
Q ss_pred HHHHHHHHHHHHHhc
Q 000201 1140 QVAGRALGELVRKLG 1154 (1866)
Q Consensus 1140 ~~A~~~L~~lv~~~~ 1154 (1866)
..++.++..++...+
T Consensus 835 ~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 835 KASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999886543
No 15
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.85 E-value=3e-17 Score=228.37 Aligned_cols=644 Identities=12% Similarity=0.129 Sum_probs=389.2
Q ss_pred hhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhcC--C
Q 000201 294 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRYG--Y 363 (1866)
Q Consensus 294 ~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~--~ 363 (1866)
+++.++|.+++|||..+| |+++|++.. ..|.+...+..+.. ..+.+..+|..| ...|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 468889999999999999 999998764 12223333333322 223345666554 36786321 1
Q ss_pred ccCC----Ch-hhhhhhcCCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHH
Q 000201 364 DFGT----DY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 437 (1866)
Q Consensus 364 ~~~~----~~-~~ll~~l~~~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 437 (1866)
.+++ .+ ..+++.+.++...+|.+.+++++.+.. .||+.|++.+..+++.. ... +...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l----~s~------~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRL----SND------DMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTC----CSS------CTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHh----CCC------CHHHHHHHHHH
Confidence 2332 23 667788888789999999999999864 36666666777776432 111 23577888889
Q ss_pred HHHhhhhcCC----CC----hHHHH--------HHHH--hhhcCCCcH---HHHHHHHHHHHHHHHhh------c-----
Q 000201 438 LHSAADVLRT----KD----LPVIM--------TFLI--SRALADTNA---DVRGRMLNAGIMIIDKH------G----- 485 (1866)
Q Consensus 438 l~~~~~~~~~----~~----~~~~~--------~fli--~~~l~d~~~---~vr~~~~~a~~~~i~~~------g----- 485 (1866)
|..+++.+.. ++ ...++ ..+. ...+.+... .++ ...++...+++.. +
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHH
Confidence 9998876542 11 11111 1110 012343322 233 2222222222111 1
Q ss_pred ccchhhhHHHHHHhhcCCCC---C--h----hhhhhHHHHHHHHHHHHhhhhcc-CCcchHHHHHHHHHhcC-----CCc
Q 000201 486 RDNVSLLFPIFENYLNKKAS---D--E----EKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLN-----TPS 550 (1866)
Q Consensus 486 ~~~~~~ll~~le~~L~~~~~---~--~----~~~~~vr~~av~~l~~i~~~l~~-~~~~~~~l~~~l~~~l~-----~~~ 550 (1866)
.++....++.|-.+|....+ . + .....+|..++.++..++..+.. -.++++.+++.++..+. ..+
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~ 305 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKY 305 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence 12345566666666654211 0 0 01135788888888888743322 23456677777766663 234
Q ss_pred HHHHHHHHhhhhhhhHhhh--------hhhHHHH-HHHHHHHH----------------------cCCChhHHHHHHHHH
Q 000201 551 EAVQRAVSSCLSPLMQSMQ--------DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGL 599 (1866)
Q Consensus 551 ~~v~~~~~~~l~~lv~~~~--------~~~~~~l-~~ll~~L~----------------------~~~~~~~R~~A~~~L 599 (1866)
+.+...+...+..++.... +....++ ..++..+. .++.+..|+.|...|
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 4555555555444332110 1122223 11222221 122346899999999
Q ss_pred HHHHhhhCcchhhhcchHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHhC------c------CchhcHHhHHHHH
Q 000201 600 AGVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLG------R------LFEPYVIQMLPLL 662 (1866)
Q Consensus 600 ~~l~~~~g~~~l~~~~ii~~L~~~i~-----~~~~~~~r~~al~al~~L~~~l~------~------~~~p~v~~llp~l 662 (1866)
..++...|...+ ..+++++.+.+. +..+|..|++|+++++.++++.. . .+.+++. ..+
T Consensus 386 ~~l~~~~~~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~---~~v 460 (960)
T 1wa5_C 386 KELKEKNEVLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT---KEI 460 (960)
T ss_dssp HHHHHHCHHHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH---HHT
T ss_pred HHHHHHcchhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH---HHh
Confidence 999988763332 346677766665 24679999999999999987531 1 2333322 223
Q ss_pred HHHcCCC---CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh-----------Chh
Q 000201 663 LVAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQ 728 (1866)
Q Consensus 663 l~~~~D~---~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~-----------~~~ 728 (1866)
+..+.|+ .+.||.++.++++++...+++.....++|.++..|.+++.++|..|+.+|..+++. .++
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~ 540 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGG
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHH
Confidence 3344566 89999999999999999888777799999999999999999999999999998873 245
Q ss_pred hHHhhhcchhHHHhhhccCCC---hH--HHHHHHHHHHHHHhhccc---hhHHhHHHHHHHhhCCCChhHHHHHHHHHhc
Q 000201 729 QLSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQT 800 (1866)
Q Consensus 729 ~~~~~l~~iv~~l~~~L~D~~---~~--VR~aA~~aL~~l~~~i~~---~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~ 800 (1866)
.+.++++.+++.++.+++... +. ....+..++..++....+ |++..+++.+...+
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l----------------- 603 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV----------------- 603 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH-----------------
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----------------
Confidence 577888999999988887641 11 345677777777665543 23333333332221
Q ss_pred cccccCCcchhhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 801 TFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 801 ~~~~~~~~~~l~~l~p~L~~~l~-d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
....+ ..+...+..++++++.++.. ..+....++.+.++|.+...+.....+....+...
T Consensus 604 ------------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i 664 (960)
T 1wa5_C 604 ------------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664 (960)
T ss_dssp ------------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred ------------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 11111 23456666788888888875 34456778899999999999987777788888888
Q ss_pred HHHHHhhcC--CCChhhHHHHHH--HhcccCCCHHHHHHHHHHHHHHHHHhChhHH--HHHHHHHHHHhccCChhHHhHH
Q 000201 880 IGSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 880 L~~l~~~~g--~~~~~~l~~~L~--~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l--~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
++.+..... .+++..++|.+. ..+.... .....+..|...+...+.... +.++..+...+.+.. .+..+
T Consensus 665 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a 739 (960)
T 1wa5_C 665 IAFVVEQSATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHG 739 (960)
T ss_dssp HHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchH
Confidence 888887652 125566777776 5554432 122333444444433322211 223322223333333 34789
Q ss_pred HHHHHHhhhhhchh-hHhHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHH
Q 000201 954 LTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLV 1002 (1866)
Q Consensus 954 l~~l~~L~~~~g~~-f~~~l~~il~~ll~~l~d~-~~~VR~~a~~al~~i~ 1002 (1866)
+.+++.++..+|.. |.||++.+++.++..+... .++++...+..+..++
T Consensus 740 ~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 740 FDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 99999999999988 9999999999999988654 4555544444444333
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.82 E-value=3.7e-18 Score=218.60 Aligned_cols=395 Identities=13% Similarity=0.154 Sum_probs=291.1
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhh---
Q 000201 369 YSGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV--- 444 (1866)
Q Consensus 369 ~~~ll~~l~~~~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~--- 444 (1866)
+..++..+.++++.+|+.|.+.|..+... .|+.+..++..+. . . +.+..+|+.++..|++....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~----~----~----~~~~~vR~~a~~~Lk~~i~~~~~ 70 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLA----N----P----GNSQVARVAAGLQIKNSLTSKDP 70 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----T----TSCHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH----c----C----CCChHHHHHHHHHHHHhccccch
Confidence 45678788899999999999999887643 4444433322221 1 1 12568999999999998532
Q ss_pred ------------cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHhhcCCCCChhhhh
Q 000201 445 ------------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 445 ------------~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~-~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
++++....+...++. .+.++++.+ ..+..+...+....++ ..|+.+++.+-..+.++. . +.
T Consensus 71 ~~~~~~~~~~~~l~~~~~~~ik~~ll~-~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~-~---~~ 144 (462)
T 1ibr_B 71 DIKAQYQQRWLAIDANARREVKNYVLQ-TLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-S---TE 144 (462)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHH-HTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-C---CH
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHH-HhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC-C---CH
Confidence 233333345555553 566777777 7777776666665555 489999998887776531 0 15
Q ss_pred hHHHHHHHHHHHHhhhhcc--CCcchHHHHHHHHHhcCCC--cHHHHHHHHhhhhhhhHhhhhh-----hHHHHHHHHHH
Q 000201 512 LVREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQ 582 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~--~~~~~~~l~~~l~~~l~~~--~~~v~~~~~~~l~~lv~~~~~~-----~~~~l~~ll~~ 582 (1866)
.+|+.++.+++.+++.+.+ ..+.++.+++.+...+.++ ++.++..++.|+..++....+. ...++-..+..
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6999999999999976532 2456788999999999988 7899999999987755433211 22333333444
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcchhh--hc-chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh------------
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISSLK--KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL------------ 647 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~--~~-~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l------------ 647 (1866)
+..+.+..+|+.++.+|..++...+. .+. .. .+++.+...+.+. +...|..++..+..+++..
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGG-GCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 55677789999999999999986542 221 12 6778777777664 5678888888888888763
Q ss_pred ---------CcCchhcHHhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhh
Q 000201 648 ---------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 711 (1866)
Q Consensus 648 ---------~~~~~p~v~~llp~ll~~~~D-------~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~ 711 (1866)
...+++++..++|.++..+.+ .+..+|.++..+++.++..++...++.++|.+.+.+.+++|++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHH
Confidence 123456678899999888853 3468999999999999999886556889999999999999999
Q ss_pred HHHHHHHHHHHHhhCh-hhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-----hhHHhHHHHHHHhh
Q 000201 712 KQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGL 783 (1866)
Q Consensus 712 r~~a~~~L~~l~~~~~-~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-----~~i~~lv~~L~~~l 783 (1866)
|.+++.+||.+++++. +.+..+++.++|.+...++|+++.||.+|+++|++++..+.+ +++..++|.+++.+
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999999999999765 556778899999999999999999999999999999987754 35566677666544
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.81 E-value=5.2e-18 Score=217.28 Aligned_cols=391 Identities=16% Similarity=0.237 Sum_probs=296.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhh-----------
Q 000201 820 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG----------- 886 (1866)
Q Consensus 820 ~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~----------- 886 (1866)
..+.+.+.++|+.|.+.+..+... + .+.....|...+.+ ..+.+|..|...|..+...
T Consensus 8 ~~~~s~d~~~r~~Ae~~L~~~~~~-----~----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 8 EKTVSPDRLELEAAQKFLERAAVE-----N----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh-----C----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 345567788999999988886541 1 12334444444544 3689999999999988743
Q ss_pred ----cCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-HHHHHHHHHHHHhccC--ChhHHhHHHHHHHH
Q 000201 887 ----MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKY 959 (1866)
Q Consensus 887 ----~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~l~~ll~~l~~~l~~~--~~~vR~~al~~l~~ 959 (1866)
++++....+...+++.+.++... + ..++.+++.++...+.+ .+++++|.+.+.+.++ ++.+|++++.+++.
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 23333345667777777765544 5 77888999999887664 7899999999999888 89999999999999
Q ss_pred hhhhh-chhhHhHHHHHHHHHHhhccCC--ChHHHHHHHHHHHHHHHhhccc----c-hhchHHhHhcccCCCchHHHHH
Q 000201 960 LPRSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQS 1031 (1866)
Q Consensus 960 L~~~~-g~~f~~~l~~il~~ll~~l~d~--~~~VR~~a~~al~~i~~~~~~~----~-i~~llp~l~~~l~d~~w~vR~~ 1031 (1866)
++..+ +..+.+|.+.+++.++.++.|+ ++.||..+++++..++..+... . .+.+++.+.....+.++.+|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99876 6677899999999999999988 7899999999998865433211 1 1235676767778889999999
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 000201 1032 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVA 1110 (1866)
Q Consensus 1032 s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~-~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~ 1110 (1866)
+++.++.+....+... + ++.. .+++.+.....|.+..+|..|+..|..++.
T Consensus 237 ~~~~l~~l~~~~~~~~---------------------------~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYM---------------------------E-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHCGGGC---------------------------T-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999998875532110 0 1122 344444455678888999999999998876
Q ss_pred cC---------------------hhhHHHhHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHhccccccchH
Q 000201 1111 NT---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSII 1162 (1866)
Q Consensus 1111 ~~---------------------p~~l~~~l~~l~~~L~~~l~~-------~~~~~R~~A~~~L~~lv~~~~~~~l~~ll 1162 (1866)
.. ...++++++.+++.++..+.+ .++.+|..|..+|+.++..++..+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 42 123345667788888777753 34678999999999999999988889999
Q ss_pred HHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh-----h
Q 000201 1163 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-----A 1237 (1866)
Q Consensus 1163 p~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~-----~ 1237 (1866)
|.+...+.++++.+|.+++.+++.+...+.+..+.++++.++|.+...+.|+++.||..|+.+++.+....+.. .
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 99999999999999999999999987766545566788999999999999999999999999999999887763 3
Q ss_pred HhhHHHHHHHhc
Q 000201 1238 IDEIVPTLLHAL 1249 (1866)
Q Consensus 1238 ~~~ilp~Ll~~L 1249 (1866)
++.++|.|+..|
T Consensus 449 l~~ll~~Ll~~L 460 (462)
T 1ibr_B 449 LAPLLQCLIEGL 460 (462)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.78 E-value=9.6e-16 Score=215.08 Aligned_cols=518 Identities=10% Similarity=0.083 Sum_probs=317.7
Q ss_pred ccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHHhhhc
Q 000201 290 GLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDIWDRY 361 (1866)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~ 361 (1866)
-.+..++.++|+++++|+...|++|++.|+++. .++ ....+...+. ..+.+..+|..| ...|...
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~---~~p--~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQ---DNP--DAWQKADQIL--QFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HST--TGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---hCc--hHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 344567889999999999999999999998764 112 2233333332 224455555443 3568765
Q ss_pred CCccCCCh-hhhhhhcCCC---------CHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCcch
Q 000201 362 GYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 430 (1866)
Q Consensus 362 ~~~~~~~~-~~ll~~l~~~---------~~~vr~~aa~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 430 (1866)
+.+-+..+ ..+++.+.+. +..+|.+.+++++.+... ||+.|++.+..+++... . +...
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~----~-------~~~~ 153 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S-------SVNV 153 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT----T-------CHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc----c-------ChHH
Confidence 54444445 5666665542 478999999999998644 77777777777776531 1 1134
Q ss_pred hhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhh
Q 000201 431 RQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 510 (1866)
Q Consensus 431 R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~ 510 (1866)
+......|+.+++.+..-. .++....-+..+.+ .+. .+.+.+++.+...+.... .
T Consensus 154 ~~~~l~~L~~l~eev~~~~------------~~~~~~~r~~~lk~----~l~----~~~~~i~~~~~~~l~~~~-----~ 208 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFS------------AEQMTQAKALHLKN----SMS----KEFEQIFKLCFQVLEQGS-----S 208 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSC------------TTTSCHHHHHHHHH----HHH----HHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHHHHHHHHHhc------------chhhhhHHHHHHHH----HHH----HHHHHHHHHHHHHHHhcC-----C
Confidence 5566666666654322100 00111111111111 111 124567777777766532 1
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh-h-------hhHHHHHHHHHH
Q 000201 511 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-D-------EAPTLVSRLLDQ 582 (1866)
Q Consensus 511 ~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~-~-------~~~~~l~~ll~~ 582 (1866)
..++..++.++.....+.+.....-..+++.+.+.+. .+++++..+++|+..++.... + ....++..++..
T Consensus 209 ~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~ 287 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQ 287 (1049)
T ss_dssp HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHH
Confidence 4588889888877665544211000123444442221 256899999999887775421 1 122222223332
Q ss_pred HH-----------------cCCChhHHHHHHHHHHHHHhhhC-----cchhh--hcchHHHHHHHHhCCCcHHHHHHHHH
Q 000201 583 LM-----------------KSDKYGERRGAAFGLAGVVKGFG-----ISSLK--KYGIAATLREGLADRNSAKRREGALL 638 (1866)
Q Consensus 583 L~-----------------~~~~~~~R~~A~~~L~~l~~~~g-----~~~l~--~~~ii~~L~~~i~~~~~~~~r~~al~ 638 (1866)
+. .+.+....+..+..+..+..... ..... -..+++.+......+ +...+..++.
T Consensus 288 l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~~le 366 (1049)
T 3m1i_C 288 IATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKTTLD 366 (1049)
T ss_dssp HHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred HHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 21 11223334444444444433211 00011 113456666655544 5566777777
Q ss_pred HHHHHHHHh------CcCchhcHHhHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHHhhcH
Q 000201 639 AFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQLSA 690 (1866)
Q Consensus 639 al~~L~~~l------~~~~~p~v~~llp~ll~~~~D~-------------------~---~~VR~~a~~al~~i~~~l~~ 690 (1866)
.+..+++.+ ...+.+++.++++.++..+.-+ + ...|+++.+++..++...+.
T Consensus 367 fw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~ 446 (1049)
T 3m1i_C 367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI 446 (1049)
T ss_dssp HHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH
Confidence 788888732 2456788889999988766311 1 14577888999998865554
Q ss_pred hhHHhHHHHHHhhcC--CCChhhHHHHHHHHHHHHhhChhhHH-hhhcchhHHHhhhcc-----CCChHHHHHHHHHHHH
Q 000201 691 QGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 691 ~~v~~llp~L~~~L~--~~~w~~r~~a~~~L~~l~~~~~~~~~-~~l~~iv~~l~~~L~-----D~~~~VR~aA~~aL~~ 762 (1866)
..+..+++.+.+.+. +.+|+.|.+++.++|+++.+...... ..++.+++.+..+.. |+++.||..+++++++
T Consensus 447 ~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgr 526 (1049)
T 3m1i_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQ 526 (1049)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 445777777777775 46899999999999999988765543 347888888777543 5678888889999999
Q ss_pred HHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 763 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 763 l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
+++++.+.. ..+..+++.+..++.+.++.++..|+.++.++++
T Consensus 527 y~~~~~~~~-------------------------------------~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 527 YPRFLKAHW-------------------------------------NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp CHHHHHHCH-------------------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHH-------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 987654210 1233345555666677778889999999999987
Q ss_pred hcCC------CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC
Q 000201 843 LVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 889 (1866)
Q Consensus 843 ~l~~------~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~ 889 (1866)
.... +.++.||++.++..+...+......-+.....+++.++...++
T Consensus 570 ~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 570 KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 5421 1222499999999999999887777778889999999998873
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.76 E-value=3.8e-14 Score=184.50 Aligned_cols=677 Identities=12% Similarity=0.088 Sum_probs=413.6
Q ss_pred HHHHhhhcCCccCCChhhhhhhcCC-CCHHHHHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhhcCCCCCCCCCCcchh
Q 000201 354 AEDIWDRYGYDFGTDYSGLFKALSH-SNYNVRLAAAEALATALDEYPDSIQGSLSTLF-SLYIRDIGLGGDNVDAGWLGR 431 (1866)
Q Consensus 354 ~~~~w~~~~~~~~~~~~~ll~~l~~-~~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~R 431 (1866)
|..+|.+.+ +..+++.+.+ .|..+.-+|.+++..+++.+++.....+..+- .-+..-... . ..+.-
T Consensus 42 a~~i~~~~~------~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~-----~~~~~ 109 (810)
T 3now_A 42 AELLYKDHC------IAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQ-K-----HENCV 109 (810)
T ss_dssp HHHHHHTTH------HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHC-C-----STTHH
T ss_pred hHHHHhCch------HHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcC-C-----CHHHH
Confidence 567898754 2334444555 78999999999999999877654433332221 001110000 0 11222
Q ss_pred hHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhh
Q 000201 432 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYD 511 (1866)
Q Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~ 511 (1866)
.++...+..+...+...+. +.-.-|++.+... + +.....++..|-..+.++. . ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----------~-~~~~~~~~~~l~~~~~~~~-~---~~ 164 (810)
T 3now_A 110 STAQFCLQTILNALSGLKN---------KPDSKPDKELCTR-----------N-NREIDTLLTCLVYSITDRT-I---SG 164 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCS---------STTCCCCHHHHHH-----------T-HHHHHHHHHHHHHHHTCTT-S---CH
T ss_pred HHHHHHHHHHHHHHhcccc---------ccccCCcHHHHhh-----------h-hhHHHHHHHHHHHHhhccc-c---Ch
Confidence 3333334333222111000 0001122222110 0 1122334444444444422 1 14
Q ss_pred hHHHHHHHHHHHHhhhhccCCcc-hH--HHHHHHHHhcCC-C----------cHHHHHHHHhhhhhhhHhhh-----hhh
Q 000201 512 LVREGVVIFTGALAKHLAKDDPK-VH--AVVDKLLDVLNT-P----------SEAVQRAVSSCLSPLMQSMQ-----DEA 572 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~-~~--~l~~~l~~~l~~-~----------~~~v~~~~~~~l~~lv~~~~-----~~~ 572 (1866)
..|+.+++++.+-..+-+...+. +. .=+.++++.-.. + .++.|..++-|+..+...+. +.+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 67888887776666443322111 11 112233333222 0 23678888888887765544 456
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
.+.+..++...+...+.+....|++++..++.+.. ...+...+.++.+...+.++ +...++.|+.+++.++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa~~~~- 322 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACECLIAASSKKD- 322 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCcH-
Confidence 77778888777777777888899999999998642 22232447889999888875 46777889999988776522
Q ss_pred CchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---------HhhHHhHHHHHHhhcCCC--ChhhHHHHHH
Q 000201 650 LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDK--AWRTKQSSVQ 717 (1866)
Q Consensus 650 ~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~---------~~~v~~llp~L~~~L~~~--~w~~r~~a~~ 717 (1866)
...++ ..-+|.|...++..+..+|.-|..+|..+..... ...+..++|.+...|.++ +..+|..|++
T Consensus 323 -~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 323 -KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp -HHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred -HHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 23333 2334889999998889999999999988874321 123578899999999887 8999999999
Q ss_pred HHHHHHhhChhhHHh-hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchh-HHhHHHHHHHhhCC--C--C----
Q 000201 718 LLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-IASLVPTLLMGLTD--P--N---- 787 (1866)
Q Consensus 718 ~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-i~~lv~~L~~~l~d--~--~---- 787 (1866)
.|.+++........- .-...+|.|+++++..++.++..|.++|+.++.....+. +.++ ..+-+.... | .
T Consensus 402 aLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l-~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 402 GLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM-IELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC-GGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH-HHHHHHhhccCcccccccc
Confidence 999998764332211 124789999999998899999999999999987432110 0000 000111100 1 0
Q ss_pred -hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHh
Q 000201 788 -DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVL 865 (1866)
Q Consensus 788 -~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l 865 (1866)
+.++.-.+.++ -...+|.|...+.+.++++|..|+.++++++. +....... -...+|.|..++
T Consensus 481 ~~~v~~r~~~Vv------------eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL 545 (810)
T 3now_A 481 VDFINKRITVLA------------NEGITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMA 545 (810)
T ss_dssp HHHHHHHHHHHH------------HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHH
Confidence 01110011221 12478999999999999999999999999985 21111111 124788889999
Q ss_pred cCCCHhHHHHHHHHHHHHHhhcCCCC------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh---hHH-HHHH
Q 000201 866 VDPIPEVRSVAARAIGSLIRGMGEEN------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYF-EHIL 935 (1866)
Q Consensus 866 ~d~~~~vR~~a~~aL~~l~~~~g~~~------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~---~~l-~~ll 935 (1866)
.++.+.+|..|+.+|+.++....++. ..+.+|.|.+.|.++.+...+..++.+|+.++..-.. ... ...+
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 99999999999999999987544321 1347899999887654544456788888887753211 111 2467
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhch
Q 000201 936 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1013 (1866)
Q Consensus 936 ~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~l 1013 (1866)
|.+...+.+.++.+|+.++.+++.++..-. ....+. ...++.++..+..++..+|..|..++..+.......
T Consensus 626 ~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~----- 699 (810)
T 3now_A 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKC----- 699 (810)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHH-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHH-----
Confidence 888898889999999999999999986432 223333 247788888888888888888877777655421000
Q ss_pred HHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCC
Q 000201 1014 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1093 (1866)
Q Consensus 1014 lp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~ 1093 (1866)
. +.+++. ...++.|...+.+.
T Consensus 700 ----------------------~-------------------------------~~ii~~------~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 700 ----------------------C-------------------------------EKILAI------ASWLDILHTLIANP 720 (810)
T ss_dssp ----------------------H-------------------------------HHHHTS------TTHHHHHHHHHTCS
T ss_pred ----------------------H-------------------------------HHHHHH------cCCHHHHHHHHCCC
Confidence 0 000100 01233344445567
Q ss_pred cHHHHHHHHHHHHHHhhcChhhHHHhH-HHHHHHHHHhhcCC---CHHHHHHHHHHHHHHHH
Q 000201 1094 SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS---SSERRQVAGRALGELVR 1151 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p~~l~~~l-~~l~~~L~~~l~~~---~~~~R~~A~~~L~~lv~ 1151 (1866)
+..+|+.|+.++..++.+.+.....+. ...++.|+..+..+ +.+++..|..+|..+.+
T Consensus 721 d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 778888888888888875543221111 13455566555433 57788888888877764
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.76 E-value=5.7e-14 Score=182.84 Aligned_cols=661 Identities=12% Similarity=0.098 Sum_probs=430.5
Q ss_pred HHHHHHHHHHHc-CCChhHHHHHHHHHHHHHhh-hCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 574 TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKG-FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 574 ~~l~~ll~~L~~-~~~~~~R~~A~~~L~~l~~~-~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
.-+.+||+-++. +.+.+.|+.|++.|.-+++. -|.+.+-..+-+..+.+.++..+++...-+|+..+..+|.+-....
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 346677777773 44567899999999988874 3445443456677888888876777888888888888887653211
Q ss_pred hhcHHh-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH------------------hhHHhHHHHHHhhcCCCC--hh
Q 000201 652 EPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDKA--WR 710 (1866)
Q Consensus 652 ~p~v~~-llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~------------------~~v~~llp~L~~~L~~~~--w~ 710 (1866)
...+.. -.|.+...+.-++..+-.++..++..+...+++ ..++.++..|+..+.+.. -.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 86 KGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChh
Confidence 222222 256677777778888888898888888876542 124667888888888764 67
Q ss_pred hHHHHHHHHHHHHhhC----hhhHHhhhcchhHHHhhhcc---C--------CChHHHHHHHHHHHHHHhhccc----hh
Q 000201 711 TKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---D--------THPKVQSAGQTALQQVGSVIKN----PE 771 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~----~~~~~~~l~~iv~~l~~~L~---D--------~~~~VR~aA~~aL~~l~~~i~~----~~ 771 (1866)
.|..++.+|..-+... +..+.. ..-+..++++.. + -.+..|..|.-||.++-+.... ..
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 8999998887655322 111111 111222333222 2 1468999999999999987763 23
Q ss_pred HHhHHHHHHH-hhCCCC--hhHH--HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCC
Q 000201 772 IASLVPTLLM-GLTDPN--DHTK--YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 846 (1866)
Q Consensus 772 i~~lv~~L~~-~l~d~~--~~vr--~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~ 846 (1866)
+.+.+..+++ .+..++ .+++ .++..+....+......-.....+|.+...+.+.+..++..|+.++++++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--- 320 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--- 320 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---
Confidence 3444444433 333333 2333 2333333211100000001236789999999999999999999999998762
Q ss_pred Ccchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCC----C-----ChhhHHHHHHHhcccCC-CHHHHHHH
Q 000201 847 PKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE----E-----NFPDLVSWLLDALKSDN-SNVERSGA 915 (1866)
Q Consensus 847 ~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~----~-----~~~~l~~~L~~~L~~~~-~~~~R~~a 915 (1866)
. .... ..+.-+|.|..++.+.+..+|..|..+|..+....+. . ....+++.+...|.++. +..+|..+
T Consensus 321 ~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~A 399 (810)
T 3now_A 321 K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399 (810)
T ss_dssp H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHH
T ss_pred c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 1111 1222248889999888899999999999998754331 1 13467788888777651 34589999
Q ss_pred HHHHHHHHHHhChh--HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh-----------h------------
Q 000201 916 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-----------F------------ 968 (1866)
Q Consensus 916 ~~~L~~l~~~~g~~--~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~-----------f------------ 968 (1866)
+++|+.+....... .. ...+|.+++.+.++++.+..+++.+++.++...... |
T Consensus 400 veaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld 479 (810)
T 3now_A 400 ADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHH
T ss_pred HHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccc
Confidence 99998876533221 11 468899999999999999999999999999743100 0
Q ss_pred -HhHH---------HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc--chhc-hHHhHhcccCCCchHHHHHHHHH
Q 000201 969 -QNYL---------QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT--SLPL-LLPAVEDGIFNDNWRIRQSSVEL 1035 (1866)
Q Consensus 969 -~~~l---------~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~--~i~~-llp~l~~~l~d~~w~vR~~s~~l 1035 (1866)
..+. ...+|.+...+..+++++|+.|.+++..+...-... .++. .+|.+...+.+.+...|..+...
T Consensus 480 ~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~A 559 (810)
T 3now_A 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQA 559 (810)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHH
Confidence 0011 247899999999999999999999999887431110 1111 46667776767777888889988
Q ss_pred HHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcChh
Q 000201 1036 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANTPK 1114 (1866)
Q Consensus 1036 l~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~-D~~~~vR~~A~~~l~~l~~~~p~ 1114 (1866)
++.+..... .+ ..++.......++.|+..+. |.+...+..|+.+|..++...+.
T Consensus 560 L~nL~~~~~------------------p~-------~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~ 614 (810)
T 3now_A 560 LARIGITIN------------------PE-------VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614 (810)
T ss_dssp HHHHHHHSC------------------HH-------HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHhcCCC------------------hh-------hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence 888753210 00 00000001124556655544 33445566789999999987554
Q ss_pred hHHHhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc--ccc--cchHHHHhcccCCCCccchhhHHHHHHHHHH
Q 000201 1115 TLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVL--PSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1189 (1866)
Q Consensus 1115 ~l~~~l~-~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~--~~l--~~llp~L~~~L~d~~~~vr~~a~~~L~~li~ 1189 (1866)
.-..++. ..++.|...+.+.++.+|..|+.+++.++..-.. .+. ...++.|...+.+++..+|..++++|+.+..
T Consensus 615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 3323332 3466777777888999999999999998753211 112 3577888888888889999999999998865
Q ss_pred hhchhhHHhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhh-----HhhHHHHHHHhccCCCc-----hhH
Q 000201 1190 SAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALEDDQT-----SDT 1257 (1866)
Q Consensus 1190 ~~~~~~l~~~l--~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~-----~~~ilp~Ll~~L~~~~~-----~~~ 1257 (1866)
. .+......+ ...++.+...+.+.+.+++..|+.++..+... +.+. -...+|.|.+.++..+. .+.
T Consensus 695 ~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~ 772 (810)
T 3now_A 695 V-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREV 772 (810)
T ss_dssp H-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHH
T ss_pred C-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHH
Confidence 3 233333333 36888899999999999999999999988652 2221 13457788877765421 134
Q ss_pred HHHHHHHHhh
Q 000201 1258 ALDGLKQILS 1267 (1866)
Q Consensus 1258 al~~l~~il~ 1267 (1866)
++++|..++.
T Consensus 773 Al~aL~~ll~ 782 (810)
T 3now_A 773 ATQCLAAAER 782 (810)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.75 E-value=3.3e-14 Score=199.03 Aligned_cols=679 Identities=10% Similarity=0.026 Sum_probs=399.3
Q ss_pred CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc----hhcHH-hHHHH
Q 000201 587 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF----EPYVI-QMLPL 661 (1866)
Q Consensus 587 ~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~----~p~v~-~llp~ 661 (1866)
.+...|+.|-..|..+-+. + +....+...+....+...|..|...+......-...+ ..++. .+++.
T Consensus 19 ~d~~~r~~A~~~L~~~~~~--p------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~ 90 (971)
T 2x1g_F 19 SNSQNQAITHEWLTDAEAS--P------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILES 90 (971)
T ss_dssp STTTC----CHHHHHTTTS--T------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC--H------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHH
Confidence 3445677777777654332 1 2233444455555677888888888887776532222 22232 35555
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCC------ChhhHHHHHHHHHHHHhhC---------
Q 000201 662 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCA--------- 726 (1866)
Q Consensus 662 ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~------~w~~r~~a~~~L~~l~~~~--------- 726 (1866)
+.....+ ...||.....++..|+....+ .++.+++.+...+.++ +...+..++.+|..+.+-.
T Consensus 91 l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r 168 (971)
T 2x1g_F 91 IVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKR 168 (971)
T ss_dssp HHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHH
Confidence 5554433 489999999999999988665 7788999999888654 4567888888888777521
Q ss_pred ---hhhHHhhhcchhHHHhhhccCCC-h-------HHHHHHHHHHHHHHh--hccchhHHhHHHHHHHhh----------
Q 000201 727 ---PQQLSQCLPKIVPKLTEVLTDTH-P-------KVQSAGQTALQQVGS--VIKNPEIASLVPTLLMGL---------- 783 (1866)
Q Consensus 727 ---~~~~~~~l~~iv~~l~~~L~D~~-~-------~VR~aA~~aL~~l~~--~i~~~~i~~lv~~L~~~l---------- 783 (1866)
.+.+..+++.+++.+..++++.. + .++..+.+|+..+.. ++.......+++.+.. +
T Consensus 169 ~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~ 247 (971)
T 2x1g_F 169 VVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIH 247 (971)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhcccccc
Confidence 12345566777777777665322 2 789999999998887 4543333567776665 4
Q ss_pred ------CCCChhHH-HHHHHHHhccccc--cCCcchhhhHHHHHHH-------hhcCCCH---HHHHHHHHHHHHHhhhc
Q 000201 784 ------TDPNDHTK-YSLDILLQTTFVN--TVDAPSLALLVPIVHR-------GLRERSA---ETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 784 ------~d~~~~vr-~al~~L~~~~~~~--~~~~~~l~~l~p~L~~-------~l~d~~~---~vr~~a~~~l~~l~~~l 844 (1866)
.++++..+ .+++.+....... ....+....++|.+.. ...+.+. +.....++++..+++..
T Consensus 248 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~ 327 (971)
T 2x1g_F 248 AGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERH 327 (971)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHT
T ss_pred ccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 01223444 4555554421110 1111234444554443 2233342 66667788877776421
Q ss_pred CC---------CcchhhhHhhhhHHHHHHhcC-----CCHhHHHHHHHHHHHHHhhc-C-----C---------CChhhH
Q 000201 845 TE---------PKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGM-G-----E---------ENFPDL 895 (1866)
Q Consensus 845 ~~---------~~~l~~~~~~ll~~L~~~l~d-----~~~~vR~~a~~aL~~l~~~~-g-----~---------~~~~~l 895 (1866)
.. .....+++..+++.+...... .+..+...++..+..+++.. + . .++..+
T Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 407 (971)
T 2x1g_F 328 STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHL 407 (971)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 00 001224566677777776643 36788888999888887632 1 1 134556
Q ss_pred HHHHHHhcccCCC--------------HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-----CChhHHhHHHHH
Q 000201 896 VSWLLDALKSDNS--------------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTL 956 (1866)
Q Consensus 896 ~~~L~~~L~~~~~--------------~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-----~~~~vR~~al~~ 956 (1866)
++.++..+.-+++ ..-|..+...+..++..+|...++.+++.+.+.+.+ .+|..|++++.+
T Consensus 408 l~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 408 TRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYS 487 (971)
T ss_dssp HHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 6666666532111 124566777788888888867777777777666554 689999999999
Q ss_pred HHHhhhhhchhhHhHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHH
Q 000201 957 FKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVEL 1035 (1866)
Q Consensus 957 l~~L~~~~g~~f~~~l~~il~~ll~~l~-d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~l 1035 (1866)
++.++..+.....++++.+++.+..... |.++.||..++.++..+...+...
T Consensus 488 l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--------------------------- 540 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN--------------------------- 540 (971)
T ss_dssp HHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----------------------------
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 9999998876666788888884433332 457778887777666554322110
Q ss_pred HHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhh
Q 000201 1036 LGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1115 (1866)
Q Consensus 1036 l~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~ 1115 (1866)
.++...+++.++..+ | ..|+..|+.++..++...+..
T Consensus 541 ----------------------------------------~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~ 577 (971)
T 2x1g_F 541 ----------------------------------------PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ 577 (971)
T ss_dssp ------------------------------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence 011223444444444 2 467889999999999888888
Q ss_pred HHHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHhcc-c---cccc----hHHHHhcccCCC--Cccchhh---H
Q 000201 1116 LKEIMPVLMNTLISSLAS--SSSERRQVAGRALGELVRKLGE-R---VLPS----IIPILSRGLKDP--SASRRQG---V 1180 (1866)
Q Consensus 1116 l~~~l~~l~~~L~~~l~~--~~~~~R~~A~~~L~~lv~~~~~-~---~l~~----llp~L~~~L~d~--~~~vr~~---a 1180 (1866)
+.++++.+++.+...+.. -+...+..+..+++.++...++ . .+.. ++..+...+... +.+.+.. .
T Consensus 578 l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 657 (971)
T 2x1g_F 578 LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFR 657 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 899999999999888876 3578899999999999987652 1 2223 333333333332 2222333 3
Q ss_pred HHHHHHHHHhhc------------hhhHHhhHhhHHHHHHHhhcC--CcHHHHHHHHHHHHHHHHHhchh---hHhhHHH
Q 000201 1181 CIGLSEVMASAG------------KSQLLSFMDELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVP 1243 (1866)
Q Consensus 1181 ~~~L~~li~~~~------------~~~l~~~l~~ll~~l~~~L~d--~~~~vr~~A~~al~~l~~~~g~~---~~~~ilp 1243 (1866)
...|+.++...+ +..+.++.+.+++.+...+.+ .+.++.+.++.+++.+...+|.. .+..+++
T Consensus 658 l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~ 737 (971)
T 2x1g_F 658 LNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCL 737 (971)
T ss_dssp HHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHH
T ss_pred HHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 334444444332 123456778888888877653 37799999999999988877654 2333444
Q ss_pred HHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHhCCC------chhhHhhHHHHHH
Q 000201 1244 TLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPG------LNFHLGTILPALL 1317 (1866)
Q Consensus 1244 ~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~g~~------l~~~l~~il~~L~ 1317 (1866)
.++..+..... ..++..+..++.. +|.. +...+..+...++
T Consensus 738 ~l~~~~~~~~~-~~~l~l~~~~i~~--------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 738 FIVASFQTRCC-APTLEISKTAIVM--------------------------------FFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp HHHHHCC--CC-HHHHHHHHHHHTT--------------------------------CCC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHH--------------------------------hCCCcchHHHHHHHHHHHHHHHH
Confidence 44444443222 2233333333321 1211 2223333333334
Q ss_pred HhcCC-------CCHHHHHHHHHHHhHhhhccc-----hhc-HHHHHHHHHhccCCCchhHHHHHHHHHHHHHhh
Q 000201 1318 SAMGD-------DDMDVQSLAKEAAETVTLVID-----EEG-VESLVSELLKGVGDNQASIRRSSAYLIGYFYKN 1379 (1866)
Q Consensus 1318 ~~l~~-------~~~~vr~~a~~~l~~l~~~~~-----~~~-~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~ 1379 (1866)
..+.. .++++++.....+..++.... .+. +..+++..+..+..++.....+++.++..++..
T Consensus 785 ~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 785 KLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 33332 256788888777777776543 244 788888888888777777777888888887654
No 22
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.75 E-value=6.4e-14 Score=190.96 Aligned_cols=765 Identities=11% Similarity=0.089 Sum_probs=419.8
Q ss_pred HHHhccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHH
Q 000201 286 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDI 357 (1866)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 357 (1866)
++.+.++-..+.+++..+++|+...|++|.+.|++.. .++ ....+...+. ..+.+..++-.| ...
T Consensus 8 ~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q---~sp--~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~~ 80 (1023)
T 4hat_C 8 DFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQ---DNP--DAWQKADQIL--QFSTNPQSKFIALSILDKLITRK 80 (1023)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HCT--TGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---cCc--cHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhh
Confidence 3444456677888999999999999999999998765 122 1222222222 223344444332 367
Q ss_pred hhhcCCccCCCh-hhhhhhcC----CC-----CHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 358 WDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATAL-DEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 358 w~~~~~~~~~~~-~~ll~~l~----~~-----~~~vr~~aa~~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
|...+.+-...+ ..+++.+. ++ ...+|.+.+++++.+. ..||+.|++.+..+.+... .
T Consensus 81 W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----~------- 149 (1023)
T 4hat_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----S------- 149 (1023)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT----T-------
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc----C-------
Confidence 976554444444 45554442 22 4678888999999986 4588888888888876531 1
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCC
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 506 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~ 506 (1866)
+..........|+.+.+.+. .| .-.+-...-|..+.++.. .+.+.+++.+...|+....
T Consensus 150 ~~~~~~~~L~iL~~L~EEV~--------~~----~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~~~- 208 (1023)
T 4hat_C 150 SVNVCENNMIVLKLLSEEVF--------DF----SAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQGAS- 208 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--------TS----CTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCSS-
T ss_pred CHHHHHHHHHHHHHHHHHHH--------Hh----hhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCCC-
Confidence 11223334444444433211 00 000111111222222221 1245677777777765221
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHHH-HhcCCCcHHHHHHHHhhhhhhhHhh--hh------hhHHHHH
Q 000201 507 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQSM--QD------EAPTLVS 577 (1866)
Q Consensus 507 ~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~-~~l~~~~~~v~~~~~~~l~~lv~~~--~~------~~~~~l~ 577 (1866)
..+...+..++++....++.+.-.-..+++.++ ..|. +++++..+++|+..++... ++ ....++.
T Consensus 209 ----~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~ 282 (1023)
T 4hat_C 209 ----SSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQ 282 (1023)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHH
Confidence 346677888887776655432100023556666 5554 4579999999998887521 11 1222333
Q ss_pred HHHHHH---------------HcC--CChhHHHHHHHHHHHHHhhhCcchhh---h-cchHH----HHHHHHhCCCcHHH
Q 000201 578 RLLDQL---------------MKS--DKYGERRGAAFGLAGVVKGFGISSLK---K-YGIAA----TLREGLADRNSAKR 632 (1866)
Q Consensus 578 ~ll~~L---------------~~~--~~~~~R~~A~~~L~~l~~~~g~~~l~---~-~~ii~----~L~~~i~~~~~~~~ 632 (1866)
..+..+ ... ++....++-+..+..+...... .+. . ..++. .|..... .++...
T Consensus 283 ~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~-li~~~~~~~~~l~~~l~~Ll~~~~-~~d~ei 360 (1023)
T 4hat_C 283 NTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRA-LLESDESLRELLLNAHQYLIQLSK-IEEREL 360 (1023)
T ss_dssp HHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGG-GGTSCGGGHHHHHHHHHHHHHHTT-SSCHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHH-HHhCCcchhHHHHHHHHHHHHhhC-CCcHHH
Confidence 333222 111 1222222333333333332211 111 0 12222 3333222 234444
Q ss_pred HHHHHHHHHHHHHHhC------cCchhcHHhHHHHHHHHcCCCC--------------------H--HHHHHHHHHHHHH
Q 000201 633 REGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV--------------------V--AVREAAECAARAM 684 (1866)
Q Consensus 633 r~~al~al~~L~~~l~------~~~~p~v~~llp~ll~~~~D~~--------------------~--~VR~~a~~al~~i 684 (1866)
-..++.-+..+++.+- ..+.|++.++++.++..+.-|. + ..-+...+++..+
T Consensus 361 ~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l 440 (1023)
T 4hat_C 361 FKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYL 440 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4455666666776543 2478888899999988765432 0 1111223677666
Q ss_pred HHhhcHhhHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChh-hHHhhhcchhHHHhhhcc-----CCChHHHHHH
Q 000201 685 MSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSAG 756 (1866)
Q Consensus 685 ~~~l~~~~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~~L~-----D~~~~VR~aA 756 (1866)
....+.+.++.+++.+.+.+.+ .+|+.+.+++.++|+++++... .....++.++|.++.++. |+++.||..+
T Consensus 441 ~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 441 THLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHH
Confidence 6655555557788888777764 6899999999999999998654 467889999999999886 5667889999
Q ss_pred HHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHH
Q 000201 757 QTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQI 836 (1866)
Q Consensus 757 ~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~ 836 (1866)
++++|++++++... ...+..++..+..++.+.++.+...||.+
T Consensus 521 ~~~lGry~~wl~~~-------------------------------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 521 MYVVGQYPRFLKAH-------------------------------------WNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1023)
T ss_dssp HHHHHTCHHHHHHC-------------------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-------------------------------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999999877421 01223344555666666677888888889
Q ss_pred HHHHhhhcCC------CcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhHHHHHHHhcccCCCH
Q 000201 837 VGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSN 909 (1866)
Q Consensus 837 l~~l~~~l~~------~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l~~~L~~~L~~~~~~ 909 (1866)
+.++|+.... +....||++.++..+.....+-.+.-+..+..+++.++...+... .+.++..|+..+..
T Consensus 564 l~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~---- 639 (1023)
T 4hat_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM---- 639 (1023)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH----
T ss_pred HHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH----
Confidence 8888875421 123467999999999998887788888999999999999887542 23333333322110
Q ss_pred HHHHHHHHHHHHHHHHhChhHHH--HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCC
Q 000201 910 VERSGAAQGLSEVLAALGTVYFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 987 (1866)
Q Consensus 910 ~~R~~a~~~L~~l~~~~g~~~l~--~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~ 987 (1866)
..+.+..-. .-+...+. +-+..+ -..+.++..++..+|..|.|++..+.+.++....-..
T Consensus 640 -----~~~~l~~~~-~~~~~~~~d~~~~~~l------------~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 640 -----AWDTIVEQS-TANPTLLLDSETVKII------------ANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp -----HHHHHHHHH-HHCTTGGGCHHHHHHH------------HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHH-hcCchhhcCHHHHHHH------------HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111000 01111110 000011 1234577788889999999999999888876532111
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHH
Q 000201 988 ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHG 1067 (1866)
Q Consensus 988 ~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~ 1067 (1866)
..+ ...+..-+....+. | ..+.+ -.+|.+.++++...+.+..+ .+.+.
T Consensus 702 ~~i--------~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~~~-----------------~~~~~ 749 (1023)
T 4hat_C 702 SMI--------SAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKARN-----------------LDDVV 749 (1023)
T ss_dssp HHH--------HHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHCSC-----------------HHHHH
T ss_pred HHH--------HHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcCCC-----------------HHHHH
Confidence 111 11111111110000 0 00000 11667777777776644210 11111
Q ss_pred HHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhc---CCCHHHHHHHH
Q 000201 1068 RAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA---SSSSERRQVAG 1143 (1866)
Q Consensus 1068 ~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~---~~~~~~R~~A~ 1143 (1866)
..++. ...+.++...-... ...++.|=.....++..+.......+..++..++..-+..+. +..++.|..-.
T Consensus 750 ~~~~~----~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff 825 (1023)
T 4hat_C 750 KVLVE----PLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFY 825 (1023)
T ss_dssp HHTHH----HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHH
T ss_pred HHhHH----HHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHH
Confidence 11111 01111111111110 112234444444444444443333344444444444444554 36789999999
Q ss_pred HHHHHHHHHhccc-------cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhc
Q 000201 1144 RALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1192 (1866)
Q Consensus 1144 ~~L~~lv~~~~~~-------~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~ 1192 (1866)
+.+..+....... ..+.++..+.-+++++.+++-..++..+.+++.++.
T Consensus 826 ~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 826 KLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999988876543 234455556667788887777777777777765543
No 23
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.75 E-value=1.1e-12 Score=183.97 Aligned_cols=698 Identities=11% Similarity=0.077 Sum_probs=402.8
Q ss_pred hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHh-cCCCHhHHHHHHHHHHHHHhh---
Q 000201 811 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSLIRG--- 886 (1866)
Q Consensus 811 l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l-~d~~~~vR~~a~~aL~~l~~~--- 886 (1866)
+..+...+.....+.+++.|+.|.+.+..+-.. + + ..+.+..++ .+.++.+|..|+..|...+..
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~---p-~-------~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS---P-Q-------AWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS---T-T-------HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---H-H-------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 333444444434556788999999988887651 1 1 122223333 256789999999999988864
Q ss_pred -cCCCChhhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-----CChhHHhHHHHHHH
Q 000201 887 -MGEENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-----QRASVRDGYLTLFK 958 (1866)
Q Consensus 887 -~g~~~~~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-----~~~~vR~~al~~l~ 958 (1866)
+.++....+-..+++.+.+. .+..+|...+.+++.++.....+.|+++++.+.+.+++ +++..++.++.+|.
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 23333344444555544432 24568999999999999887667788999999998865 36667888999998
Q ss_pred Hhhhhh-c------------hhhHhHHHHHHHHHHhhccCCCh--HHHHHHHHHHHHHHHhhcccch--hchHHhHhccc
Q 000201 959 YLPRSL-G------------VQFQNYLQQVLPAILDGLADENE--SVRDAALGAGHVLVEHYATTSL--PLLLPAVEDGI 1021 (1866)
Q Consensus 959 ~L~~~~-g------------~~f~~~l~~il~~ll~~l~d~~~--~VR~~a~~al~~i~~~~~~~~i--~~llp~l~~~l 1021 (1866)
.++... . ..+..+++.+++.+...+.+... .++..+++++...+. .+.... ..+++.+.+.+
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 888532 1 12334566666666665544322 255555555544333 111111 22333333322
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHH
Q 000201 1022 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAA 1101 (1866)
Q Consensus 1022 ~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A 1101 (1866)
.+|.+|..++
T Consensus 251 --~~~~~~~~a~-------------------------------------------------------------------- 260 (963)
T 2x19_B 251 --QDSELFDSSV-------------------------------------------------------------------- 260 (963)
T ss_dssp --TSTTTHHHHH--------------------------------------------------------------------
T ss_pred --CCchHHHHHH--------------------------------------------------------------------
Confidence 1344444444
Q ss_pred HHHHHHHhhcC-hhhHHHhHHHHHHHHH-------HhhcCCCHHHHHHHHHHHHHHHHHhc---------cccccchHHH
Q 000201 1102 LHVWKTIVANT-PKTLKEIMPVLMNTLI-------SSLASSSSERRQVAGRALGELVRKLG---------ERVLPSIIPI 1164 (1866)
Q Consensus 1102 ~~~l~~l~~~~-p~~l~~~l~~l~~~L~-------~~l~~~~~~~R~~A~~~L~~lv~~~~---------~~~l~~llp~ 1164 (1866)
+++..++... +....+++..+++.++ ..+...+.+.....++.+..+..... ...+..+++.
T Consensus 261 -~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 339 (963)
T 2x19_B 261 -EAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNM 339 (963)
T ss_dssp -HHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -HHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHH
Confidence 4444444321 1111111111111111 11122233333333333333332211 1123344454
Q ss_pred HhcccCC-----CCccchhhHHHHHHHHHHhh----------chhhHHhhHhhHHHHHHHhhcCCcH-------------
Q 000201 1165 LSRGLKD-----PSASRRQGVCIGLSEVMASA----------GKSQLLSFMDELIPTIRTALCDSIL------------- 1216 (1866)
Q Consensus 1165 L~~~L~d-----~~~~vr~~a~~~L~~li~~~----------~~~~l~~~l~~ll~~l~~~L~d~~~------------- 1216 (1866)
+...... .+..+...++..+..+.... ....+.+++..+++.+...+.-++.
T Consensus 340 ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~ 419 (963)
T 2x19_B 340 IMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQ 419 (963)
T ss_dssp HHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHH
T ss_pred HHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHH
Confidence 5444443 24555666665555544421 1123456777778777665542211
Q ss_pred --HHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCCchhHHHHHHHHHhhccccccchhhhhhhhcCC--ccchhHH
Q 000201 1217 --EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLP--LSAFNAH 1292 (1866)
Q Consensus 1217 --~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~--~~~~~~~ 1292 (1866)
+.|..+..++..++...+...+..+++.+-..+..-. .... .......
T Consensus 420 ~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~----------------------------~~~~w~~~eaal~ 471 (963)
T 2x19_B 420 FRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSE----------------------------EPYSWQHTEALLY 471 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC----------------------------CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC----------------------------CCCchHHHHHHHH
Confidence 1233444455555544443333333322222221000 0000 0011234
Q ss_pred HHHHHHHHhCCCchhhHhhHHHHHHHhcCCCCHHHHHHHHHHHhHhhhccc--hhcHHHHHHHHHhccCCCchhHHHHHH
Q 000201 1293 ALGALAEVAGPGLNFHLGTILPALLSAMGDDDMDVQSLAKEAAETVTLVID--EEGVESLVSELLKGVGDNQASIRRSSA 1370 (1866)
Q Consensus 1293 al~~La~~~g~~l~~~l~~il~~L~~~l~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~ll~~L~~~l~~~~~~vR~~a~ 1370 (1866)
+++++++.......++++.+++.+. .+.++++.+|..+..+++.+...+. .+.+..+++.++..+.+ +.++..|+
T Consensus 472 al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~ 548 (963)
T 2x19_B 472 GFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSV 548 (963)
T ss_dssp HHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHH
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 5666665544445567777777443 4455678899999999998876543 35688888989888865 88999999
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHhcCCcc----hhhhhHHHHHHHHhhhhhhh
Q 000201 1371 YLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAAAWEALSRVVASVPKE----VQPSYIKVIRDAISTSRDKE 1444 (1866)
Q Consensus 1371 ~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~A~~aL~~l~~~~~~~----~l~~l~~~l~~~l~~~~~~~ 1444 (1866)
.++..+++..+..+.+|++.++..+..++.. .+...+..++++++.++...+.+ ++..++.++.+.+...
T Consensus 549 ~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~---- 624 (963)
T 2x19_B 549 STLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKL---- 624 (963)
T ss_dssp HHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999999988888999999999999998874 45788999999999999877622 2222332222222111
Q ss_pred hhhhcCCccccCCcCCCCCccccHHHHHHhhcc-CCHHHHH---HHHHHHHHHHhhcCh---------------------
Q 000201 1445 RRKKKGGPILIPGFCLPKALQPLLPIFLQGLIS-GSAELRE---QAALGLGELIEVTSE--------------------- 1499 (1866)
Q Consensus 1445 ~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~-~~~~~r~---~a~~~L~~l~~~~~~--------------------- 1499 (1866)
..+ .+++.+. ....+++.++...+.
T Consensus 625 ------------------------------~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (963)
T 2x19_B 625 ------------------------------AEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGP 674 (963)
T ss_dssp ------------------------------HSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CC
T ss_pred ------------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCC
Confidence 001 1222222 445556666655421
Q ss_pred hhhhhhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000201 1500 QSLKEFVIPITGPLIRIIGDR-FPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDS-TRTVRSSAALALGKL 1577 (1866)
Q Consensus 1500 ~~l~~~v~~i~~~Li~~l~~~-~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~-~~~vR~~Aa~aLg~L 1577 (1866)
..+.++...+++.+.+++... .+..+...++.++..++..+|..+.||+|++.+.++...... ... ....++.+
T Consensus 675 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~l 750 (963)
T 2x19_B 675 NPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQAS----ALDLTRQL 750 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHH----HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccH----HHHHHHHH
Confidence 124456667777776666432 246788999999999999999999999999999888776553 222 22333433
Q ss_pred Hh---ccC----ChhhHHHHHHHH----hc-c--CChhHHHHHHHHHHHHHHhcCcccc-HHH-HHHHHHHHHHhhcCCC
Q 000201 1578 SA---LST----RVDPLVGDLLSS----LQ-V--SDAGIREAILTALKGVLKHAGKSVS-SAV-KIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1578 ~~---~~~----~~~~~l~~L~~~----l~-~--~~~~vr~~~l~aL~~vi~~~~~~l~-~~~-~~~i~~~L~~~l~~~~ 1641 (1866)
+. .++ .+..++..++.. ++ + ..++++...+..+..++.+....+. .+. ...++..+...+.+.+
T Consensus 751 i~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 751 VHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 22 222 233333333332 22 2 3589999999999999988776542 344 7788888888888888
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 000201 1642 DHVRVSAASILGIMSQCME 1660 (1866)
Q Consensus 1642 ~~vr~~aa~~l~~L~~~~~ 1660 (1866)
..+...+...+..+....+
T Consensus 831 ~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 831 APTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8888888888888876543
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=5.3e-15 Score=193.56 Aligned_cols=506 Identities=13% Similarity=0.147 Sum_probs=343.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH
Q 000201 577 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 577 ~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~ 656 (1866)
..+-..| ++.+...|+.+..-+..+. ..|.+. ....+.+.+.+.++ +...|..+..++..+++.-+ ....
T Consensus 16 ~~i~~~L-~~~~~~~k~~~~~kli~~~-~~G~d~---~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~ 85 (591)
T 2vgl_B 16 FELKAEL-NNEKKEKRKEAVKKVIAAM-TVGKDV---SSLFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAI 85 (591)
T ss_dssp HHHHHHT-TSSCHHHHHHHHHHHHHHH-HTTCCC---GGGHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHH-HCCCCh---HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHH
Confidence 3333333 4445556666555544322 234322 12345555666654 56777777777777776422 2334
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcc
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 736 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~ 736 (1866)
.+++.+.+.++|+++.+|..|..++..+. .+.-...++|.+.+.+.|+++.+|+.|+.+++.+....|+.+.. ..
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~ 160 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QG 160 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--cc
Confidence 55677888899999999998877776653 45556888999999999999999999999999999977765433 36
Q ss_pred hhHHHhhhccCCChHHHHHHHHHHHHHHhhccch----hHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh
Q 000201 737 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 737 iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~----~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
+++.+..+++|+++.|+.+|+.+|..++..-.+. .....++.+++.+.+.++..+ ..++.+.... ..+....
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~ 237 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKDDREA 237 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHH
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHH
Confidence 8899999999999999999999999998754322 123456666666666665554 3455443321 1223455
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc-CCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l-~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
..+++.+...+++.++.++..|+.++..+...+ .++..+....+.+.+.+..++ ++++++|..+..+++.++...+ +
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~ 315 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-E 315 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-S
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-H
Confidence 678899999999999999999999999987543 223344445566777777655 5789999999999999998644 3
Q ss_pred ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHh
Q 000201 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 970 (1866)
Q Consensus 891 ~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~ 970 (1866)
.+...+..++ .+.++. ..+|..++..+..++. .+..+.+++.+...+.+.++.+|..++..++.++..++.
T Consensus 316 ~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~~---~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~---- 386 (591)
T 2vgl_B 316 ILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLAS---QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ---- 386 (591)
T ss_dssp TTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTCC---SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHCC---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh----
Confidence 2322222221 222333 6688888887766542 334677888899999899999999999999999987654
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccC-CCchHHHHHHHHHHHHHHHHhcCCccc
Q 000201 971 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDNWRIRQSSVELLGDLLFKVAGTSGK 1049 (1866)
Q Consensus 971 ~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~-d~~w~vR~~s~~ll~~ll~~~~~~~~~ 1049 (1866)
....+++.++..+.+..+.++..+..++..++..++.. ....++.+.+.+. .....+|..++..+|+.....
T Consensus 387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~------ 459 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI------ 459 (591)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC------
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc------
Confidence 44556777888888889999999988888888776543 2334555555554 345668888888888742110
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1050 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1050 ~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
. . -.+++..++....+.+..||..++.++..+....|....+.+..++..
T Consensus 460 --------~---~----------------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~--- 509 (591)
T 2vgl_B 460 --------D---N----------------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSL--- 509 (591)
T ss_dssp --------T---T----------------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHH---
T ss_pred --------c---C----------------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---
Confidence 0 0 013444444455677889999999999999887775332333333332
Q ss_pred hhc-CCCHHHHHHHHHHHHH
Q 000201 1130 SLA-SSSSERRQVAGRALGE 1148 (1866)
Q Consensus 1130 ~l~-~~~~~~R~~A~~~L~~ 1148 (1866)
+.. +.+.++|.-|...+.-
T Consensus 510 ~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 510 ATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHTTCCCHHHHHHHHHHHTT
T ss_pred hhhcCCChHHHHHHHHHHHH
Confidence 223 4678999988876543
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=8e-15 Score=191.82 Aligned_cols=500 Identities=15% Similarity=0.148 Sum_probs=343.3
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcc-hHHHH
Q 000201 461 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVV 539 (1866)
Q Consensus 461 ~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~-~~~l~ 539 (1866)
.+.+++...|..++.-.... ...|.+....++.+++ ++++++ ..+|..+...+..++.. ++. ..-++
T Consensus 21 ~L~~~~~~~k~~~~~kli~~-~~~G~d~~~~~~~vi~-l~~s~~------~~~Krl~yl~l~~~~~~----~~e~~~l~~ 88 (591)
T 2vgl_B 21 ELNNEKKEKRKEAVKKVIAA-MTVGKDVSSLFPDVVN-CMQTDN------LELKKLVYLYLMNYAKS----QPDMAIMAV 88 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHH-HHTTCCCGGGHHHHHH-TTSSSC------HHHHHHHHHHHHHHHHH----SHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHH-HHCCCChHHHHHHHHH-HhCCCC------HHHHHHHHHHHHHHccc----CchHHHHHH
Confidence 45566766666554444432 3346665555555555 554322 45777776666665542 111 23456
Q ss_pred HHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHH
Q 000201 540 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 619 (1866)
Q Consensus 540 ~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~ 619 (1866)
+.+.+.|.++++.++..+..++..+.. .+.....++.+. .++.+.++.+|+.|+.++..+... +++.+...++++.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~-~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLR-KCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDS 164 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHH-HHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHH
Confidence 778888999999999988888766531 122334444444 455688899999999999999984 4555543467889
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhCcC-chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHH
Q 000201 620 LREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 698 (1866)
Q Consensus 620 L~~~i~~~~~~~~r~~al~al~~L~~~l~~~-~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp 698 (1866)
+.+.+.+ .++.++..|+.+++.++..-+.. +-+.....++.++..+.+.++-.+-...+++..+.. ..+.....+++
T Consensus 165 l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~-~~~~~~~~~l~ 242 (591)
T 2vgl_B 165 LRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-KDDREAQSICE 242 (591)
T ss_dssp HHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-CSHHHHHHHHH
T ss_pred HHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 9998875 46789999999998888754432 233445566677777777777777666655544321 12234578999
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhC---hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCA---PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~---~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
.+...+.+.++.++.+|+.++..+.... ++.+......+.+.+..++ ++++.||..|+.+|..++....+ .+...
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~ 320 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQE 320 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHH
Confidence 9999999999999999999999987532 3334444556677777655 47899999999999999875432 12222
Q ss_pred HHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
+..+.....|| .++| .+++.+..+. +......+++.+...+++.++++|..++..++.++... .+..
T Consensus 321 ~~~~~~~~~d~-~~Ir~~al~~L~~l~-----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~------~~~~ 388 (591)
T 2vgl_B 321 IKVFFVKYNDP-IYVKLEKLDIMIRLA-----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV------EQSA 388 (591)
T ss_dssp TTTTSCCTTSC-HHHHHHHHHHHHHTC-----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC------HHHH
T ss_pred HHhheeccCCh-HHHHHHHHHHHHHHC-----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC------hhHH
Confidence 22222223455 6777 6888776532 22345678899999999999999999999999998742 3445
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 934 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~l 934 (1866)
+.+++.+.+++.+....++..+..+++.+....++. ....++.|.+.+.+...+..|..+++.+|+.+..... ..++
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~~ 465 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADEL 465 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHHH
Confidence 668888899999999999999999999998865543 4567788888887666677888888888887654432 2455
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhh-ccC-CChHHHHHHHHHHH
Q 000201 935 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG-LAD-ENESVRDAALGAGH 999 (1866)
Q Consensus 935 l~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~-l~d-~~~~VR~~a~~al~ 999 (1866)
+..+.+.+.+.++.+|..++.++..+....+....+ .+..+++. ..| .+.+||+.|...+.
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~----~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQE----LVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTHH----HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHH----HHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 555665666678999999999999998877654323 33334443 345 67899998876543
No 26
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.73 E-value=6.1e-13 Score=181.52 Aligned_cols=616 Identities=13% Similarity=0.116 Sum_probs=367.4
Q ss_pred hhHHHHHhhhcCC--ChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHHHHHhhhcCCccCCChhh
Q 000201 294 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSG 371 (1866)
Q Consensus 294 ~~~~~~l~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 371 (1866)
+++.+.++.+++| |+..|.+|.+.|+++. ..+ +-|.-
T Consensus 6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q---~sp---------------------------~aw~~----------- 44 (980)
T 3ibv_A 6 QDVENAVEAALDPSVGPIIKQQATDFIGSLR---SSS---------------------------TGWKI----------- 44 (980)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH---HST---------------------------THHHH-----------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH---cCh---------------------------hHHHH-----------
Confidence 4566677777787 6889999999998764 000 12331
Q ss_pred hhhhcCC---CCHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhh
Q 000201 372 LFKALSH---SNYNVRLAAAEALATALDEYPDS-----IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 443 (1866)
Q Consensus 372 ll~~l~~---~~~~vr~~aa~~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~ 443 (1866)
++..|.+ .+..+|..|++.+-..+...|+. ...+...+++.... ... . .++..+|.-++.++..++.
T Consensus 45 ~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~-~~~-~---~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 45 CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE-LSF-L---DEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH-CCS-T---TSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH-hcC-C---CCcHHHHHHHHHHHHHHHH
Confidence 1111222 26788888888887766555443 33444555554432 111 0 1256788888888888877
Q ss_pred hcCCCChHHHHHHHHhhhc-CCCcHHHHHHHHHHHHHHHHhhc----------------------ccc----hhhhHHHH
Q 000201 444 VLRTKDLPVIMTFLISRAL-ADTNADVRGRMLNAGIMIIDKHG----------------------RDN----VSLLFPIF 496 (1866)
Q Consensus 444 ~~~~~~~~~~~~fli~~~l-~d~~~~vr~~~~~a~~~~i~~~g----------------------~~~----~~~ll~~l 496 (1866)
..-++.|+.++..++...- ++.+ ......+.....+-+.-+ ... .+..+.++
T Consensus 120 ~~~p~~Wp~~i~~l~~~~~~~~~~-~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL 198 (980)
T 3ibv_A 120 QLYPSNWNDFFASLQGVIAASSQS-EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMM 198 (980)
T ss_dssp HHTTTTCTTHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HhCcccCchHHHHHHHHhcCCChh-HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHH
Confidence 7666677776666654211 1221 122222222221001000 001 23333444
Q ss_pred HHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh--hhHH
Q 000201 497 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--EAPT 574 (1866)
Q Consensus 497 e~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~--~~~~ 574 (1866)
+.+.... .+.++..+..++++-....+...-.-..+++.+...+.+ ++++.++++|+..++....+ ...+
T Consensus 199 ~~~~~~~------~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~ 270 (980)
T 3ibv_A 199 LAYSNAK------NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLN 270 (980)
T ss_dssp HHHHHTT------CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHhccC------CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHH
Confidence 4443321 145777788877776655433210014677778888775 68999999999888765431 1122
Q ss_pred HHHH-----HHHHHHc-CCChhHHHHHHHHHHHHHhh-----hCcc--------h--hhhcchHHHHHHHHhCCCcHHHH
Q 000201 575 LVSR-----LLDQLMK-SDKYGERRGAAFGLAGVVKG-----FGIS--------S--LKKYGIAATLREGLADRNSAKRR 633 (1866)
Q Consensus 575 ~l~~-----ll~~L~~-~~~~~~R~~A~~~L~~l~~~-----~g~~--------~--l~~~~ii~~L~~~i~~~~~~~~r 633 (1866)
++.. .+..+.. .++.+.+++-+.-+..+... ..+. . -.-..+++.+.....++++ ..-
T Consensus 271 li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~d-eVs 349 (980)
T 3ibv_A 271 LLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYD-ETS 349 (980)
T ss_dssp HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSH-HHH
T ss_pred HHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCch-hHH
Confidence 2221 1222222 34555544333332222111 0110 0 0012577777777777554 333
Q ss_pred HHHHHHHHHHHHHh---------CcCchhcHHhHHHHHHHHcCCC------C----------HHHHHHHHHHHHHHHHhh
Q 000201 634 EGALLAFECLCEKL---------GRLFEPYVIQMLPLLLVAFSDQ------V----------VAVREAAECAARAMMSQL 688 (1866)
Q Consensus 634 ~~al~al~~L~~~l---------~~~~~p~v~~llp~ll~~~~D~------~----------~~VR~~a~~al~~i~~~l 688 (1866)
..+...+..+.+.. ...+.|++.++++.++..+.-+ + ...|+... .+..++..+
T Consensus 350 ~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l 428 (980)
T 3ibv_A 350 TAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSI 428 (980)
T ss_dssp HTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhc
Confidence 33444444444332 2235677888888888776521 1 14777777 666666666
Q ss_pred cHhhH-H----hHHHHHHhhcC---CCChhhHHHHHHHHHHHHhhChhhH------HhhhcchhHHHhhhcc-----CCC
Q 000201 689 SAQGV-K----LVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTH 749 (1866)
Q Consensus 689 ~~~~v-~----~llp~L~~~L~---~~~w~~r~~a~~~L~~l~~~~~~~~------~~~l~~iv~~l~~~L~-----D~~ 749 (1866)
.+..+ . .+.+.+.+.+. +.+|+.+.+++.+|+.++++++... ..++|.+++.+..+++ ++|
T Consensus 429 ~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h 508 (980)
T 3ibv_A 429 DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH 508 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC
Confidence 66554 4 44444445553 4579999999999999999976532 2467788888888766 899
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHH--hhcCCCH
Q 000201 750 PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR--GLRERSA 827 (1866)
Q Consensus 750 ~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~--~l~d~~~ 827 (1866)
|.||..+++.++++.+++... .+ .+..+++.+.. ++.+++.
T Consensus 509 p~V~~~~~~~l~rys~~~~~~--~~-----------------------------------~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 509 PLVQLLYMEILVRYASFFDYE--SA-----------------------------------AIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp HHHHHHHHHHHHHTGGGGGTC--CT-----------------------------------THHHHHHHHTSTTTTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcC--ch-----------------------------------hHHHHHHHHhccccccCCCh
Confidence 999999999999999988531 01 22233444444 6666777
Q ss_pred HHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC---------------------CHhHHHHHHHHHHHHHhh
Q 000201 828 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---------------------IPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 828 ~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~---------------------~~~vR~~a~~aL~~l~~~ 886 (1866)
.+|..|+.++.++++... ..+.||.+.++..+..++.-. ..+-+.....++|.++..
T Consensus 552 ~V~~~a~~af~~f~~~~~--~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~ 629 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIK--KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISS 629 (980)
T ss_dssp TTHHHHHHHHHHHHHHTT--TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh--HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhC
Confidence 889999999999998653 467899999998888877621 012466789999999988
Q ss_pred cCC--C----ChhhHHHHHHHhcc----cCCCH-HHHH---HHHHHHHHHHHHhCh---------hHHHHHHHHHHHHhc
Q 000201 887 MGE--E----NFPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS 943 (1866)
Q Consensus 887 ~g~--~----~~~~l~~~L~~~L~----~~~~~-~~R~---~a~~~L~~l~~~~g~---------~~l~~ll~~l~~~l~ 943 (1866)
.+. + ++..+++.+++.+. ..... ..+. ..+.+++.+++++.. ..+.+.++.+...+.
T Consensus 630 ~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~ 709 (980)
T 3ibv_A 630 GNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILD 709 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHH
Confidence 763 1 45556655554432 21111 1111 344556888887632 245566666666655
Q ss_pred --cCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc
Q 000201 944 --HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1008 (1866)
Q Consensus 944 --~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~ 1008 (1866)
..+..+|+.+..+|..+..++|.++.|+++.++..++...+- .+. ...+..+..++..|+.+
T Consensus 710 ~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~--~e~-~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 710 RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDM--NEL-VDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCT--TTH-HHHHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCH--HHH-HHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999965432 222 23556677777777665
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.67 E-value=1.8e-14 Score=183.66 Aligned_cols=345 Identities=13% Similarity=0.069 Sum_probs=254.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh-CcCchhcHH--hHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhcHh-
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKL-GRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 691 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l-~~~~~p~v~--~llp~ll~~~~D~-~~~VR~~a~~al~~i~~~l~~~- 691 (1866)
++.+.+.+.++ ++..|..|+.++..++... .......+. .++|.+...+.++ ++.+|..+.+++..++..-+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56666666654 5778999999998876532 222333343 5899999999988 8999999999999998633221
Q ss_pred -h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccC-CChHHHHHHHHHHHHHHhh
Q 000201 692 -G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 692 -~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~ 766 (1866)
. + ...+|.+++.|.++++.+|..|+.+|+.++...+......+ ..++|.++.++.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 1 45899999999999999999999999999987654322211 3688999999985 7899999999999999964
Q ss_pred c-c---chhHHhHHHHHHHhhCCCChhHH-HHHHHHHhcccccc--CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 I-K---NPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i-~---~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
. . ...+..++|.|.+.+.+++..++ .++..+........ ...-....++|.+...+.+.++++|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 1 12347899999999998887777 45555544221110 0000123578999999999999999999999999
Q ss_pred HhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---Ch-hhHHHHHHHhcccCCCHHHHHH
Q 000201 840 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 914 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~-~~l~~~L~~~L~~~~~~~~R~~ 914 (1866)
++.. ......... ..+++.+..++.++++.+|..|+.+|+.++....+. .+ ..++|.++..+.+. +..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHH
Confidence 9873 211111112 258899999999999999999999999998632111 11 35788888888764 4568999
Q ss_pred HHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc
Q 000201 915 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 965 (1866)
Q Consensus 915 a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g 965 (1866)
++.+|+.++.....+.. ..++|.+++.+.++++.+|..++.++..+....+
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 99999999876444322 3578899999999999999999999999887544
No 28
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.67 E-value=1.2e-12 Score=176.85 Aligned_cols=760 Identities=9% Similarity=0.076 Sum_probs=402.8
Q ss_pred HHHhccChhhHHHHHhhhcCCChhHHHHHHhhhccCccccCCCCCccccccchheeeecCCchhHHHHH--------HHH
Q 000201 286 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA--------EDI 357 (1866)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 357 (1866)
++.+.++-..+.+++..+.+|+...|.+|.+.|++.. .++ ........+. ..+.+..++-.| ...
T Consensus 20 d~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q---~sp--~aw~~~~~iL--~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 20 DFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLK---EHP--DAWTRVDTIL--EFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp SSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS---CCS--CHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCc--hHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhh
Confidence 3444455567889999999999999999999999876 122 1222222221 223344443322 366
Q ss_pred hhhcCCccCCCh-hhhhhhcC----C-----CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000201 358 WDRYGYDFGTDY-SGLFKALS----H-----SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 426 (1866)
Q Consensus 358 w~~~~~~~~~~~-~~ll~~l~----~-----~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 426 (1866)
|...+.+-...+ ..+++.+. + +++.++.+.+++++.+.. .||+.|++.+..+++....
T Consensus 93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~----------- 161 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT----------- 161 (1073)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-----------
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-----------
Confidence 876544444444 55554442 2 367889999999999864 4787777777777765421
Q ss_pred CcchhhHHHHHHHHhhhhcCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCC
Q 000201 427 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 506 (1866)
Q Consensus 427 ~~~~R~~~~~~l~~~~~~~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~ 506 (1866)
+...+......|+.+.+.+.. |- ..-+ ...-+..+.+. +. .+++.+++.+...|+....
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d--------~~-~~~l---~~~r~~~lk~~----L~----~~~~~Il~ll~~iL~~~~~- 220 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFD--------FS-SGQI---TQVKAKHLKDS----MC----NEFSQIFQLCQFVMENSQN- 220 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT--------SH-HHHB---CHHHHHHHHHH----HH----HTCHHHHHHHHHHHHHCCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHh--------cc-cccc---cHHHHHHHHHH----HH----HHHHHHHHHHHHHhcccCC-
Confidence 112334444555555443211 00 0000 00111111111 11 2357788888888765321
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccCCcchHHHHHHH-HHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH-
Q 000201 507 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM- 584 (1866)
Q Consensus 507 ~~~~~~vr~~av~~l~~i~~~l~~~~~~~~~l~~~l-~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~- 584 (1866)
..+...+..++++....++.+.-.-..+++.+ ...|. +++++..+++|+..++....+...+.+..++..++
T Consensus 221 ----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 221 ----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp ----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34666677888877776643210002355655 35554 55799999999988876532222233333332221
Q ss_pred ------c-CCChhH--------HHHHHHHHHHHHhhhCcchhh----hcc-------hHHHHHHHHhCCCcHHHHHHHHH
Q 000201 585 ------K-SDKYGE--------RRGAAFGLAGVVKGFGISSLK----KYG-------IAATLREGLADRNSAKRREGALL 638 (1866)
Q Consensus 585 ------~-~~~~~~--------R~~A~~~L~~l~~~~g~~~l~----~~~-------ii~~L~~~i~~~~~~~~r~~al~ 638 (1866)
. ..+... -..-..+++.+....|..... ..+ .+..+...... .+...-.....
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~-~d~ei~kitf~ 373 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV-EETEIFKICLE 373 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-SCHHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 0 001000 012233344333332211110 001 12222332222 33333334445
Q ss_pred HHHHHHHHhC-------------------------cCchhcHHhHHHHHHHHcCCCC----------------------H
Q 000201 639 AFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV----------------------V 671 (1866)
Q Consensus 639 al~~L~~~l~-------------------------~~~~p~v~~llp~ll~~~~D~~----------------------~ 671 (1866)
-+..+.+.+- ..+.|++.++...+...+.-|. .
T Consensus 374 fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~ 453 (1073)
T 3gjx_A 374 YWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSI 453 (1073)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHH
T ss_pred HHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchH
Confidence 4555555431 0155666777777776665221 1
Q ss_pred HHHHHHHHHHHHHHHhhcHh-hHHhHHHHHHhhcCC--CChhhHHHHHHHHHHHHhhChh-hHHhhhcchhHHHhhhccC
Q 000201 672 AVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTD 747 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~-~v~~llp~L~~~L~~--~~w~~r~~a~~~L~~l~~~~~~-~~~~~l~~iv~~l~~~L~D 747 (1866)
.+++...+++..+. ++.+. ....+++.+-+.++. .+|+...+++.++|+|+.+... .-...++.+++.|+.+...
T Consensus 454 ~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~ 532 (1073)
T 3gjx_A 454 NLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ 532 (1073)
T ss_dssp HHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc
Confidence 34555666665554 34333 346667776665543 5799999999999999976654 3557899999999988865
Q ss_pred C-----ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhh
Q 000201 748 T-----HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 822 (1866)
Q Consensus 748 ~-----~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l 822 (1866)
+ .+.|+...++.+|++.+++... . ..+..++..+.+++
T Consensus 533 ~~~kd~k~~vas~i~~vlgrY~~wl~~h--~-----------------------------------~~L~~vl~~L~~~m 575 (1073)
T 3gjx_A 533 KRGKDNKAIIASNIMYIVGQYPRFLRAH--W-----------------------------------KFLKTVVNKLFEFM 575 (1073)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHC--H-----------------------------------HHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHhhhHHHHHhC--H-----------------------------------HHHHHHHHHHHHHH
Confidence 4 4567888889999998877531 0 01222334444555
Q ss_pred cCCCHHHHHHHHHHHHHHhhhcCCC------cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC-hhhH
Q 000201 823 RERSAETKKKAAQIVGNMCSLVTEP------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDL 895 (1866)
Q Consensus 823 ~d~~~~vr~~a~~~l~~l~~~l~~~------~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~-~~~l 895 (1866)
.+.++.++..||.++..+|..+... .+..||++.++..+.....+-.++-......++|.++...+.+. .+.+
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~ 655 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 655 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 5666678888888888888754321 23457899999988888887778888889999999999888652 2333
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHhccCChh-HHh--HHHHHHHHhhhhhchhhHh
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQRAS-VRD--GYLTLFKYLPRSLGVQFQN 970 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~--~g~~~l~~ll~~l~~~l~~~~~~-vR~--~al~~l~~L~~~~g~~f~~ 970 (1866)
+..|+.... +.+..+... -+.+.+ . ++. ++. ..+.+...++...|..|.|
T Consensus 656 i~~Lm~~~~------------~~w~~l~~~~~~~~~~~-----------~--d~~~i~~l~~il~~n~~v~~~~g~~f~~ 710 (1073)
T 3gjx_A 656 IEKYMLLPN------------QVWDSIIQQATKNVDIL-----------K--DPETVKQLGSILKTNVRACKAVGHPFVI 710 (1073)
T ss_dssp HHHHTHHHH------------HHHHHHHHHHHHCGGGG-----------G--CHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHH------------HHHHHHHHHhhcCchhc-----------c--ChHHHHHHHHHHhhhHHHHhhcchhHHH
Confidence 333332211 001111110 011111 0 111 111 2345666788899999999
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccc
Q 000201 971 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1050 (1866)
Q Consensus 971 ~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~ 1050 (1866)
++..+.+-++...+--...+ ...+..-+....+. ...+++ -.+|.+.++++...+.+
T Consensus 711 ~~~~i~~~~l~~y~~~s~~i--------~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~-------- 767 (1073)
T 3gjx_A 711 QLGRIYLDMLNVYKCLSENI--------SAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR-------- 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc--------
Confidence 99998887764321100111 11111101100000 011111 02566667777665421
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1051 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1051 ~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~-~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
.+ +.+.+ .+.+=....+.++...-... .-.++.|-.....++..+....+..+..++..++..-+.
T Consensus 768 -----~~----~~~~v----~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~ 834 (1073)
T 3gjx_A 768 -----SN----DPQMV----AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLN 834 (1073)
T ss_dssp -----CS----CHHHH----HHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHH
T ss_pred -----CC----CHHHH----HHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 00 11111 11110011111111111110 012344444444455555544444444455555444445
Q ss_pred hhc---CCCHHHHHHHHHHHHHHHHHhcccc-------ccchHHHHhcccCCCCccchhhHHHHHHHHHHh
Q 000201 1130 SLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1190 (1866)
Q Consensus 1130 ~l~---~~~~~~R~~A~~~L~~lv~~~~~~~-------l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~ 1190 (1866)
.+. +..++.|..-.+.+..+...+.... ...++..+.-++++..+++-..++..+.+++.+
T Consensus 835 mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 835 MINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp HHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 554 5678999999999999998865532 233455555566676666666666666665544
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.67 E-value=2.3e-14 Score=182.49 Aligned_cols=393 Identities=16% Similarity=0.123 Sum_probs=267.4
Q ss_pred hHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHH
Q 000201 738 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 738 v~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+|.+++.++++++.+|..|+.+|..+...-.++.+..++ . ...++|.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~-------~--------------------------~~~~i~~ 68 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI-------S--------------------------TPGVVAR 68 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHH-------T--------------------------STTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------H--------------------------cCCcHHH
Confidence 777888888999999999999999876432232221100 0 0135677
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC---C-
Q 000201 818 VHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N- 891 (1866)
Q Consensus 818 L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---~- 891 (1866)
+.+.+++. ++.+|..++.++.+++.. .+.....+ -...+|.|..++.++++.+|..|+.+|+.++....+. .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777776 789999999999999862 21111111 2458999999999999999999999999998743211 1
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhC----hhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g----~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
-...++.++..+.++.+..+|..++.+|+.++...+ .......+|.+...+.+.++.+|..++.+++.++......
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH
Confidence 125788888888865667799999999999986542 2244778899999999999999999999999988654322
Q ss_pred hHhHH-HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCC
Q 000201 968 FQNYL-QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1046 (1866)
Q Consensus 968 f~~~l-~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~ 1046 (1866)
..... ..++|.++..+.++++.+|..++.++..+......
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------------------------------------- 267 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI--------------------------------------- 267 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH---------------------------------------
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH---------------------------------------
Confidence 21111 23555566666555555655555554443321000
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhH-HHHHH
Q 000201 1047 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN 1125 (1866)
Q Consensus 1047 ~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l-~~l~~ 1125 (1866)
....+.+ ..+++.+...+.+.++.+|..|+.+++.++...+.....++ ..+++
T Consensus 268 -------------------~~~~~~~-------~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 268 -------------------QTQVILN-------CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp -------------------HHHHHHT-------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred -------------------HHHHHHH-------CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0000000 02445555566777889999999999999877665544444 35667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhccc-----cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhh-----
Q 000201 1126 TLISSLASSSSERRQVAGRALGELVRKLGER-----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ----- 1195 (1866)
Q Consensus 1126 ~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~-----~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~----- 1195 (1866)
.++..+.++++.+|..|+.+|+.++....+. +-..++|.+...+.++++.+|..++.+|..++.......
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 401 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGT 401 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcccc
Confidence 7777788889999999999999998753222 123578888888888899999999999998876433211
Q ss_pred -HHhhHhhH-----HHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000201 1196 -LLSFMDEL-----IPTIRTALCDSILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1196 -l~~~l~~l-----l~~l~~~L~d~~~~vr~~A~~al~~l~ 1230 (1866)
..+|...+ ++.+...+.+++.++++.|..++..++
T Consensus 402 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 402 GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp CCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 12333333 455666666778888888887776654
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.67 E-value=1.5e-14 Score=187.85 Aligned_cols=382 Identities=13% Similarity=0.091 Sum_probs=285.2
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCCC-ChhhHHHHHHHHHHHHhhChh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~~-~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
....+|.+...+.++++.+|..|..++..++..-.. ..+ ..++|.+++.|.++ +|.+|..|+.+|+.++...+.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445678888888999999999999999998764321 122 45899999999987 899999999999999987654
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-h-h-H-HhHHHHHHHhhCCCChhHH-HHHHHHHhccc
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P-E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTF 802 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-~-~-i-~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~ 802 (1866)
..... -..++|.++.++.++++.||..|+++|+.++..-.. . . + ..++|.|...+.+++..++ .++..|.....
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 43221 147899999999999999999999999999864211 1 1 1 4688999999988777776 46666655322
Q ss_pred c--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHH
Q 000201 803 V--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARA 879 (1866)
Q Consensus 803 ~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~a 879 (1866)
. ..........++|.|.+.+.+.++.++..++.++++++.. .+....... ..+++.|..++.++++.+|..|+.+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 1 2223344567899999999999999999999999999862 222222222 2688999999999999999999999
Q ss_pred HHHHHhhcCCC---C-hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCChhHHh
Q 000201 880 IGSLIRGMGEE---N-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 880 L~~l~~~~g~~---~-~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~~~vR~ 951 (1866)
|+.++...+.. . -..++|.|...+.+. +..+|..++.+|+.++...... .+ ..++|.++..+.++++.+|.
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 99998632211 1 135788888888765 4668999999999987632211 11 35778888888889999999
Q ss_pred HHHHHHHHhhhhhch--hhHhHHH--HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------chh-----c
Q 000201 952 GYLTLFKYLPRSLGV--QFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLP-----L 1012 (1866)
Q Consensus 952 ~al~~l~~L~~~~g~--~f~~~l~--~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~i~-----~ 1012 (1866)
.++.+++.++...+. ....++- .++|.++..+.++++.+|..++.++..++...... ... .
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 999999999887544 4444443 38999999999999999999999999887654321 111 1
Q ss_pred hHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1013 LLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1013 llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
.++.+.....+++..++..+..++..+
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356677777888888998888888775
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.66 E-value=2.5e-13 Score=182.86 Aligned_cols=527 Identities=13% Similarity=0.061 Sum_probs=315.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-hhh-hcc
Q 000201 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-SLK-KYG 615 (1866)
Q Consensus 538 l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~l~-~~~ 615 (1866)
-++.++..|.+++++++..++..+...-. ..-....++.+...| .+++..+|..|+.+|..+....... .+. ..+
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~--~~i~~g~ip~Lv~lL-~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDD--AELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhH--HHHHhCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 35678888888888888877776543211 111244566666544 4667889999999999998743211 111 225
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-- 691 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-- 691 (1866)
+++.|.+.+.+..++..|..|+.++..++..... ...+ ...+|.+...+.++++.+|..|.++|..++......
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 7888888887656788888899888887653211 1111 257899999999999999999999999998754332
Q ss_pred hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-hhcchhHHHhhhccCCChH-HHHHHHHHHHHHHhhc
Q 000201 692 GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPK-VQSAGQTALQQVGSVI 767 (1866)
Q Consensus 692 ~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~-VR~aA~~aL~~l~~~i 767 (1866)
.+ ...+|.+++.|.+++++++..++.+|..++...++.... .-...++.++.++.+.+++ ++..++.+|..++..-
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 12 468999999999999999999999999888754432111 1125678888888877655 4567888888887532
Q ss_pred cch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 768 KNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 768 ~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
.+. .+ ...+|.|...+.+++..++ .++..+........ .......++|.|.+.+.+.++++|..|+.++++++..
T Consensus 351 ~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 351 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch-hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 221 22 3578999999988876555 55555544221111 1122457899999999999999999999999999862
Q ss_pred cCCCcchhhh-HhhhhHHHHHHhcC-CC-HhHHHHHHHHHHHHHhhcCCCC-------hhhHHHHHHHhcccCCCHHHHH
Q 000201 844 VTEPKDMIPY-IGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEEN-------FPDLVSWLLDALKSDNSNVERS 913 (1866)
Q Consensus 844 l~~~~~l~~~-~~~ll~~L~~~l~d-~~-~~vR~~a~~aL~~l~~~~g~~~-------~~~l~~~L~~~L~~~~~~~~R~ 913 (1866)
........ -...++.|...+.+ .. ..+|..|+.+|+.++...++.. -...+|.|.+.+.+.....+|.
T Consensus 430 --~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~ 507 (780)
T 2z6g_A 430 --NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 507 (780)
T ss_dssp --CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred --CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHH
Confidence 21111111 12356777777765 23 4899999999999875333210 1246788888888776656899
Q ss_pred HHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHH
Q 000201 914 GAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 990 (1866)
Q Consensus 914 ~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~V 990 (1866)
.++..|+.++..-... .+ ..++|.+++.+.+.++.+|..+.++++.-....|.............+.....+ +..
T Consensus 508 ~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~ 585 (780)
T 2z6g_A 508 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHN 585 (780)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhh
Confidence 9999999987521111 11 246677777776655555544333333200000111111111122222222111 111
Q ss_pred HHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHH
Q 000201 991 RDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1070 (1866)
Q Consensus 991 R~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l 1070 (1866)
|.. +.. ...+|.+...+.+.+..++..++..++.+... ......
T Consensus 586 ~~~-------l~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~---------------------~~~~~~- 629 (780)
T 2z6g_A 586 RIV-------IRG-------LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---------------------KEAAEA- 629 (780)
T ss_dssp HHH-------HHH-------TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS---------------------HHHHHH-
T ss_pred HHH-------HHH-------CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---------------------HHHHHH-
Confidence 110 000 01334444445555555665555555554200 000011
Q ss_pred HHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1071 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1071 ~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
+...| .++.|.....+.+..||..|..+|..++.+.+..+
T Consensus 630 i~~~g------~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 630 IEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp HHHTT------CHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHCC------CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 11111 23444455678889999999999999998776433
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.65 E-value=8.8e-14 Score=180.77 Aligned_cols=388 Identities=14% Similarity=0.112 Sum_probs=281.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 651 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~ 651 (1866)
.++.++..| .++++..|..|++.|..++.... ...+...+++|.|.+.+.+.+++..|..|+.+++.++.+.....
T Consensus 75 ~l~~lv~~L-~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGV-YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 455566666 45678899999999999887543 12333457899999999887668899999999999997432211
Q ss_pred hhcHH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhc-CCCChhhHHHHHHHHHHHHhh
Q 000201 652 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 652 ~p~v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L-~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
...+. ..+|.++..+.++++.||..|.+++..++..-+.. .+ ...+|.++..| .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 58999999999999999999999999998643321 12 24789999999 678999999999999999987
Q ss_pred ChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcccccc
Q 000201 726 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 805 (1866)
Q Consensus 726 ~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~ 805 (1866)
.+.........++|.+..++.+.++.|+..|+++|..++.... ..++.+ .
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~----~------------------------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAV----I------------------------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHH----H-------------------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHH----H-------------------------
Confidence 5443334457899999999999999999999999999985321 111100 0
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCC-CHhHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 883 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~-~~~vR~~a~~aL~~l 883 (1866)
-..++|.+...+.+.++.++..|+.++++++.. ......... ..+++.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 113567777778888889999999999999862 221111122 35788899999988 999999999999999
Q ss_pred HhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHhHHH
Q 000201 884 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYL 954 (1866)
Q Consensus 884 ~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~~al 954 (1866)
+....+. .-..++|.|+..+.+. +..+|..++.+|+.++.....+.. ...++.+...+.++++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632111 1125678888887765 456899999999999876444422 35678899999999999999999
Q ss_pred HHHHHhhhhhchh----------hHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 955 TLFKYLPRSLGVQ----------FQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 955 ~~l~~L~~~~g~~----------f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++..+....+.. +..++.. .++.+.....+++++++..|...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999998765431 2222221 245566666777788877776665543
No 33
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.65 E-value=2.7e-11 Score=170.01 Aligned_cols=782 Identities=12% Similarity=0.081 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 574 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 574 ~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
..+..++..+.+.+ ...|+.|-..|..+-+.. +.+ ..+...+.+..+...|..|...+......-...+.+
T Consensus 16 ~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p--~~~------~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNP--DAW------QKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHST--TGG------GGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCc--hHH------HHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 44555555555444 457888888887765432 221 122233333456788888888888777643222222
Q ss_pred ----cHH-hHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 000201 654 ----YVI-QMLPLLLVAFSDQ-----VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 723 (1866)
Q Consensus 654 ----~v~-~llp~ll~~~~D~-----~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~ 723 (1866)
++. .++..+.....++ +..||.....++..|+..--+..++.+++.+++.+. .+...+..++.+|..+.
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHH
Confidence 222 2444444333233 478999999999999988656677889999999886 45556777777777766
Q ss_pred hhCh----------------hhHHhhhcchhHHHhhhccCC-ChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCC
Q 000201 724 YCAP----------------QQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 786 (1866)
Q Consensus 724 ~~~~----------------~~~~~~l~~iv~~l~~~L~D~-~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~ 786 (1866)
+-.. +.+..+++.+++.+..++++. ++.++..+.+|+..+..++..+.+. .
T Consensus 166 eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~----------~-- 233 (1049)
T 3m1i_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIY----------E-- 233 (1049)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH----------S--
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHh----------h--
Confidence 4321 223444566666666666532 4567777777777665544322110 0
Q ss_pred ChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 787 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 787 ~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
..+++.+...+. .++++|..|++++..++.. . +.++.......+...+
T Consensus 234 -------------------------~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~--~---~~~~~~~~~~~~~~l~- 281 (1049)
T 3m1i_C 234 -------------------------TNILELLSTKFM-TSPDTRAITLKCLTEVSNL--K---IPQDNDLIKRQTVLFF- 281 (1049)
T ss_dssp -------------------------SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC--C---CCTTCHHHHHHHHHHH-
T ss_pred -------------------------hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC--C---CCcchhhHHHHHHHHH-
Confidence 012222221111 1457777777777777652 1 1111000001111000
Q ss_pred CCCHhHHHHHHHHHHHHHh-hcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHh------C---hhHHHHHHH
Q 000201 867 DPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL------G---TVYFEHILP 936 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~-~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~------g---~~~l~~ll~ 936 (1866)
...+..+.. .++.. ..+.+.+... ++.+.......+..+..++... + ...+..+++
T Consensus 282 ----------~~~l~~l~~si~p~~--~~l~~~~~~~--~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 347 (1049)
T 3m1i_C 282 ----------QNTLQQIATSVMPVT--ADLKATYANA--NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQ 347 (1049)
T ss_dssp ----------HHHHHHHHHHTCCTT--SCHHHHHHHT--CTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred ----------HHHHHHHHHhhCCCc--ccHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 000111111 00000 0011111000 1111112222222222222110 0 123455666
Q ss_pred HHHHHhccCChhHHhHHHHHHHHhhhh------hchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccch
Q 000201 937 DIIRNCSHQRASVRDGYLTLFKYLPRS------LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1010 (1866)
Q Consensus 937 ~l~~~l~~~~~~vR~~al~~l~~L~~~------~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i 1010 (1866)
.++.....++..++..++..|..++.. ....+.+++..+++.++..+.-+++.. ....+..
T Consensus 348 ~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~-------------~~~dd~~ 414 (1049)
T 3m1i_C 348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-------------VVENDEG 414 (1049)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCC-------------EEECTTS
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCccee-------------eeeCCCC
Confidence 677666677888899999999888773 235677889999998888775432110 0000000
Q ss_pred hchHHhHhccc-CCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHh
Q 000201 1011 PLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV 1089 (1866)
Q Consensus 1011 ~~llp~l~~~l-~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~ 1089 (1866)
+ .+.... +++.|..|.++.+++..+... .+.+...-+++.+-..
T Consensus 415 e----~~r~~~~d~d~~~~~~~~~~~L~~l~~~-------------------------------~~~~~l~~v~~~l~~~ 459 (1049)
T 3m1i_C 415 E----IVREFVKESDTIQLYKSEREVLVYLTHL-------------------------------NVIDTEEIMISKLARQ 459 (1049)
T ss_dssp C----EEECSSCCHHHHHHHHHHHHHHHHHHHH-------------------------------CHHHHHHHHHHHHHHH
T ss_pred c----chHhhhccchHHHHHHHHHHHHHHHHcc-------------------------------CHHHHHHHHHHHHHHH
Confidence 0 000111 123455665555555444211 0111111111111111
Q ss_pred c--CCCcHHHHHHHHHHHHHHhhcChhhH-HHhHHHHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHHhcc--cccc
Q 000201 1090 R--SDVSLSVRQAALHVWKTIVANTPKTL-KEIMPVLMNTLISSLA-----SSSSERRQVAGRALGELVRKLGE--RVLP 1159 (1866)
Q Consensus 1090 ~--~D~~~~vR~~A~~~l~~l~~~~p~~l-~~~l~~l~~~L~~~l~-----~~~~~~R~~A~~~L~~lv~~~~~--~~l~ 1159 (1866)
. ...+|..|++|+-+++.++....... ..+++.+++.+..... ++.+.+|..++.+++++.+.+.. ..++
T Consensus 460 l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~ 539 (1049)
T 3m1i_C 460 IDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR 539 (1049)
T ss_dssp HTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2 24689999999999999987665442 3467888887765332 13344555688888877765433 4678
Q ss_pred chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH-------HhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 000201 1160 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1232 (1866)
Q Consensus 1160 ~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~ 1232 (1866)
.+++.+..++.++++.++..||.++..+...+..... .+|++.++..+...+.+.+.+-.....++++.+...
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 8888888889888899999999999999887764322 388999999888888877666667777888888776
Q ss_pred hch-hhH----hhHHHHHHHhccCCCchhHHHHHHHHHhhcccc--ccc--hhhhhhhhcCCccchhHHHHHHHHHHhCC
Q 000201 1233 AGM-QAI----DEIVPTLLHALEDDQTSDTALDGLKQILSVRTT--AVL--PHILPKLVHLPLSAFNAHALGALAEVAGP 1303 (1866)
Q Consensus 1233 ~g~-~~~----~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~~~--~il--p~Lip~L~~~~~~~~~~~al~~La~~~g~ 1303 (1866)
.+. ... ..+++.++..+. .++..... ... +.-...+ ......+..++...|.
T Consensus 620 ~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~d~~~~~~l------~~~l~~~~~~~~~l~~ 680 (1049)
T 3m1i_C 620 ERSVAERNRLLSDLMQLPNMAWD-------------TIVEQSTANPTLLLDSETVKII------ANIIKTNVAVCTSMGA 680 (1049)
T ss_dssp CCSHHHHHHHHHHHTHHHHHHHH-------------HHHHHHHHCGGGGGSHHHHHHH------HHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhchhhhcCHHHHHHH------HHHHHHHHHHHHHhhH
Confidence 662 222 233333333221 11100000 000 0000000 0001223344444555
Q ss_pred CchhhHhhHHHHHHHhcCC-----------------CCHH------HHHHHHHHHhHhhhccc------hhcHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVID------EEGVESLVSEL 1354 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~-----------------~~~~------vr~~a~~~l~~l~~~~~------~~~~~~ll~~L 1354 (1866)
.|.+++..+++.++..+.. ..+. +.......+........ .+.++.++..+
T Consensus 681 ~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 681 DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 5555555554443321110 0000 00001111111111111 12234444444
Q ss_pred HhccCCCchhHH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHH----hC---CCChhHHHHHHHHHHHHHhcCCcchh
Q 000201 1355 LKGVGDNQASIR-RSSAYLIGYFYKNSKLYLVDEAPNMISTLIVL----LS---DSDSTTVAAAWEALSRVVASVPKEVQ 1426 (1866)
Q Consensus 1355 ~~~l~~~~~~vR-~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~l----l~---d~~~~v~~~A~~aL~~l~~~~~~~~l 1426 (1866)
+..........| ..++.+++.++...+..+.+|++.++..++.. +. +.+++++...+..++++++..+...+
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 443221111111 34677777777666667778888888777765 32 46789999999999999987765432
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcCh----hh-
Q 000201 1427 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSE----QS- 1501 (1866)
Q Consensus 1427 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~----~~- 1501 (1866)
+. . |..+..++...+.++.....+....++..+..++..... +.
T Consensus 841 ~~---------~----------------------~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~ 889 (1049)
T 3m1i_C 841 EL---------P----------------------PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFA 889 (1049)
T ss_dssp HS---------C----------------------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHH
T ss_pred cC---------C----------------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 10 0 011223444555566667777888888888887765421 11
Q ss_pred ---hhhhhhhhhHHHHHHhcCCC
Q 000201 1502 ---LKEFVIPITGPLIRIIGDRF 1521 (1866)
Q Consensus 1502 ---l~~~v~~i~~~Li~~l~~~~ 1521 (1866)
++.|...++..++.++.+..
T Consensus 890 ~~f~~~~~~~l~~~~~~~l~~~~ 912 (1049)
T 3m1i_C 890 NEFHKNYFFIFVSETFFVLTDSD 912 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcch
Confidence 22333445555555665543
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.64 E-value=2.8e-14 Score=185.36 Aligned_cols=388 Identities=13% Similarity=0.128 Sum_probs=282.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCc---chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~---~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..| .++++..|..|+..|..++..... ..+...+++|.|.+.+.+..++..|..|+.+++.++.+... ..
T Consensus 89 i~~lv~~L-~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~ 166 (530)
T 1wa5_B 89 LPQMTQQL-NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-QT 166 (530)
T ss_dssp HHHHHHHH-SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HH
Confidence 44455555 455678888999999888764211 22334578999999988765788999999999988864321 11
Q ss_pred hcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC
Q 000201 653 PYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 726 (1866)
Q Consensus 653 p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~ 726 (1866)
..+ ..++|.++..+.++++.||..|.+++..++...+.. . + ..++|.++..+.+.++.++..++.+|+.++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 222 357889999999999999999999999998643221 1 1 457899999999999999999999999999765
Q ss_pred -hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcccccc
Q 000201 727 -PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 805 (1866)
Q Consensus 727 -~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~ 805 (1866)
+.........++|.+..++.+.++.||..|+++|..++.... ..... +.
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~----~~------------------------- 296 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQA----VI------------------------- 296 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHH----HH-------------------------
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-HHHHH----HH-------------------------
Confidence 332223346889999999999999999999999999985321 01110 00
Q ss_pred CCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 806 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 806 ~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
-..++|.+...+.+.++.+|..|+.++++++.. ......... ..+++.|..++.++++.+|..|+.+|+.++
T Consensus 297 -----~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 297 -----DVRIPKRLVELLSHESTLVQTPALRAVGNIVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp -----HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -----hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 013567777788888899999999999999862 211111112 368899999999999999999999999998
Q ss_pred hhcCCC---Ch-hhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh--hHH-----HHHHHHHHHHhccCChhHHhHH
Q 000201 885 RGMGEE---NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF-----EHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 885 ~~~g~~---~~-~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~--~~l-----~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
....+. .+ ..++|.|+..+.+. +..+|..++.+|+.++...+. +.. ...+|.+...+.+.++.+|..+
T Consensus 370 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 370 AGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 632211 11 34677777777654 456899999999999887554 322 2478889999999999999999
Q ss_pred HHHHHHhhhhhchh-------hHhHHHH-----HHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 000201 954 LTLFKYLPRSLGVQ-------FQNYLQQ-----VLPAILDGLADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 954 l~~l~~L~~~~g~~-------f~~~l~~-----il~~ll~~l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
+.++..+....... ..+|... .++.+...+.+++++|+..+..++..+..
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99999988765432 1233332 47778888889999999988877766553
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.63 E-value=1.2e-13 Score=179.55 Aligned_cols=381 Identities=14% Similarity=0.111 Sum_probs=283.1
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCCCC-hhhHHHHHHHHHHHHhhChhhH
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~~~-w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
.-+|.++..+.++++.+|..|..++..++..-.. ..+ ..++|.|++.|.+++ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4578888888999999999999999999775431 122 468999999999886 9999999999999998765543
Q ss_pred Hhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhh-CCCChhHH-HHHHHHHhcccc
Q 000201 731 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 803 (1866)
Q Consensus 731 ~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l-~d~~~~vr-~al~~L~~~~~~ 803 (1866)
.... ...+|.++.++.++++.||..|+++|+.++..-.. ..+ ...+|.|+..+ .+++..++ .++..|......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2222 26889999999999999999999999999853211 112 35788999998 56666665 455555553222
Q ss_pred -ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 804 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 804 -~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
..........++|.|.+.+.+.+++++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222334567899999999999999999999999999862 21111122 2358899999999999999999999999
Q ss_pred HHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh----HHHHHHHHHHHHhccCChhHHhHH
Q 000201 882 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGY 953 (1866)
Q Consensus 882 ~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~----~l~~ll~~l~~~l~~~~~~vR~~a 953 (1866)
.++...... .-..++|.|...+.+..+..+|..++.+|+.++...... .-..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998632211 113578888888876635678999999999988632211 113677899999988999999999
Q ss_pred HHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----------c---hh--chHHh
Q 000201 954 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLLPA 1016 (1866)
Q Consensus 954 l~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----------~---i~--~llp~ 1016 (1866)
+.+++.++.........|+ ..+++.++..+.+++++++..++.++..++...... . +. ..++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987555555665 468999999999999999999999999887643220 0 11 12445
Q ss_pred HhcccCCCchHHHHHHHHHHHHH
Q 000201 1017 VEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1017 l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+.....+.+..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 55666777888888888877765
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.62 E-value=4.1e-13 Score=180.85 Aligned_cols=506 Identities=11% Similarity=0.072 Sum_probs=323.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-Hhhhcc
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPK 736 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~ 736 (1866)
-+|.++..+.+++..+|.++...+..+-.. .-....+|.|...|.+++..+|..|+.+|+.++....... ....+.
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~---~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHH---HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 356677778888899999888877654221 1126678889888889999999999999999997543221 112346
Q ss_pred hhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHH
Q 000201 737 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 737 iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
+++.|+..|.+ .++.+|..|+.+|..++..-.+ . ..+. -...+
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~----~~i~------------------------------~~g~I 236 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--L----LAIF------------------------------KSGGI 236 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--H----HHHH------------------------------HTTHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--H----HHHH------------------------------HcCCH
Confidence 88888888874 4899999999999987653110 0 0000 01346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---- 890 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~---- 890 (1866)
|.|.+.+++.+..+|..|+.++.+++..-.. ....+ -...++.|..++.++++.++..+..++..++....+.
T Consensus 237 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 7777788888889999999999999874221 11122 2468899999999999999999999999887521110
Q ss_pred ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--H-HHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 891 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 891 ~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~--~-l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
.-...++.|+..+++......+..++..|..++..-... . -...++.++..+.+.+..++..++.++..++......
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~ 394 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 394 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh
Confidence 112457777777776655444445556666655321111 1 1345788888888888999999999999998766432
Q ss_pred hHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc---ch-hchHHhHhcccCC-Cch-HHHHHHHHHHHHHHH
Q 000201 968 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-DNW-RIRQSSVELLGDLLF 1041 (1866)
Q Consensus 968 f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~---~i-~~llp~l~~~l~d-~~w-~vR~~s~~ll~~ll~ 1041 (1866)
.....++|.++..+.++++.+|..+..++..+...-... .+ ...+|.+...+.+ .++ .+|..++..++.+..
T Consensus 395 --~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 395 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp --SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 123568899999999999999999999988775432110 00 1144555555543 233 789999988887621
Q ss_pred HhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHhhcChhhHHH--
Q 000201 1042 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKE-- 1118 (1866)
Q Consensus 1042 ~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~-~~vR~~A~~~l~~l~~~~p~~l~~-- 1118 (1866)
. +. +.+.....+... ..++.|...+.+.+ +.+|..|+.+++.++.+.. ....
T Consensus 473 ~--------------~~---~~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~ 527 (780)
T 2z6g_A 473 R--------------HQ---DAEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLR 527 (780)
T ss_dssp S--------------ST---THHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHH
T ss_pred c--------------Cc---hHHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 0 00 000011111111 13445555555444 5899999999999986432 2111
Q ss_pred ---hHHHHHHHHHHh----------------hcC--CCHHHHHHHHHHHHHHHHHhccc---cccchHHHHhcccCCCCc
Q 000201 1119 ---IMPVLMNTLISS----------------LAS--SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSA 1174 (1866)
Q Consensus 1119 ---~l~~l~~~L~~~----------------l~~--~~~~~R~~A~~~L~~lv~~~~~~---~l~~llp~L~~~L~d~~~ 1174 (1866)
.++.++..+... +.+ ..++++..++.+|+.++...... .-...+|.|...+.++++
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 607 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIE 607 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCH
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCH
Confidence 234444433211 000 12456777888888775321100 124567888888889999
Q ss_pred cchhhHHHHHHHHHHhhchhhHHhhH--hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhc
Q 000201 1175 SRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1175 ~vr~~a~~~L~~li~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g 1234 (1866)
.++..++.+|..+... +. ....+ ...++.+...+.+.+++||..|..++..+.....
T Consensus 608 ~v~~~a~~aL~~L~~~--~~-~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 608 NIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcC--HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999887532 11 22222 2357778888999999999999999999876544
No 37
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.9e-15 Score=166.85 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=172.4
Q ss_pred HHcCCChhHHHHHHHHHHH-HHhhhCc-c--hhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-cCch-hcHH
Q 000201 583 LMKSDKYGERRGAAFGLAG-VVKGFGI-S--SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVI 656 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~-l~~~~g~-~--~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~-~~~~-p~v~ 656 (1866)
.+.+++|..|++|...|.. ++.+... . .....+++..|.+.+.++.+...|..|+.+++.++++++ ..|. +|..
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 3478899999999999999 8865321 1 122246788888888656678899999999999999999 8899 9999
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh---h-HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh---hh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQ 729 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~---~-v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~---~~ 729 (1866)
.++|.++..++|....||+++..++..++..+++. . +..+++.++..|++++|++|.+++.+|+.++...+ ..
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 99999999999999999999999999999988543 2 46899999999999999999999999999998876 66
Q ss_pred HHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHH
Q 000201 730 LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 779 (1866)
Q Consensus 730 ~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L 779 (1866)
+..++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.|
T Consensus 184 l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 88899 999999999999999999999999999999999988777777765
No 38
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.60 E-value=2.1e-10 Score=156.43 Aligned_cols=772 Identities=12% Similarity=0.091 Sum_probs=413.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+.++.++..+.+.++ ..|+.|-..|..+-+.. +.. .+. ...+....++..|..|+..+......-...+.
T Consensus 15 v~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp--~aw---~~~---~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNP--DAW---QKA---DQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCT--TGG---GGH---HHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCc--cHH---HHH---HHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4556666666666554 47777877777666543 222 112 22223344678888888877777664322222
Q ss_pred h----cH-HhHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 000201 653 P----YV-IQMLPLLLVAFSDQ-----VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p----~v-~~llp~ll~~~~D~-----~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l 722 (1866)
+ .+ ..++..+.....++ ...++.....++..++...-+..++.+++.+++.+.++ .......+.+|..+
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 1 22 23555555544343 46788889999999998877777889999999988653 34455666666665
Q ss_pred HhhCh----------------hhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccchhH--HhHHHHHHHhh
Q 000201 723 AYCAP----------------QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGL 783 (1866)
Q Consensus 723 ~~~~~----------------~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~~~i--~~lv~~L~~~l 783 (1866)
.+-.. +.+...++.+++.+..++.+ .++.+...+.+|++.+..++.-..+ ..+++.+..
T Consensus 165 ~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~-- 242 (1023)
T 4hat_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLST-- 242 (1023)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT--
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHH--
Confidence 54310 12344556666666666643 4567777777777777776542222 223333330
Q ss_pred CCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc--chhhhHhhhhHHH
Q 000201 784 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK--DMIPYIGLLLPEV 861 (1866)
Q Consensus 784 ~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~--~l~~~~~~ll~~L 861 (1866)
..+. +++.|..|++++..++..-..+. .....+..+.+.+
T Consensus 243 ------------------------------------~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~ 284 (1023)
T 4hat_C 243 ------------------------------------KFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNT 284 (1023)
T ss_dssp ------------------------------------HHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHH
Confidence 3332 34567777777776664110001 1111111111111
Q ss_pred HHHh----cCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhCh-----hHHH
Q 000201 862 KKVL----VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-----VYFE 932 (1866)
Q Consensus 862 ~~~l----~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~-----~~l~ 932 (1866)
...+ -...... -+.+.. .++.+.....+.+..+.+++..... ..+.
T Consensus 285 l~~l~~~i~p~~~~l-----------------------~~~~~~--~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~ 339 (1023)
T 4hat_C 285 LQQIATSVMPVTADL-----------------------KATYAN--ANGNDQSFLQDLAMFLTTYLARNRALLESDESLR 339 (1023)
T ss_dssp HHHHHHHTCCTTCCH-----------------------HHHHHH--TCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGH
T ss_pred HHHHHHHhCCCcchH-----------------------HHHHhc--cccchHHHHHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 1111 0000000 011100 0000010111111111111111000 0011
Q ss_pred HH----HHHHHHHhccCChhHHhHHHHHHHHhhhhh------chhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Q 000201 933 HI----LPDIIRNCSHQRASVRDGYLTLFKYLPRSL------GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 933 ~l----l~~l~~~l~~~~~~vR~~al~~l~~L~~~~------g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~ 1002 (1866)
++ +..++.....++.++-..++..|..+.... ...|.|++.++++.++..+.-+.+..- +
T Consensus 340 ~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~i----------v 409 (1023)
T 4hat_C 340 ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLV----------V 409 (1023)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCE----------E
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCccccc----------C
Confidence 11 123333334456666566677777666533 235788888999988888765532100 0
Q ss_pred HhhcccchhchHHhHhcccCCC----chH-HHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchh
Q 000201 1003 EHYATTSLPLLLPAVEDGIFND----NWR-IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1077 (1866)
Q Consensus 1003 ~~~~~~~i~~llp~l~~~l~d~----~w~-vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~ 1077 (1866)
..-..+.++ ....|. .|+ .| +.+..+ ....+.+
T Consensus 410 e~d~~~~~~-------e~~~d~d~~~~f~~~R----d~L~~l-------------------------------~~l~~~~ 447 (1023)
T 4hat_C 410 ENDEGEIVR-------EFVKESDTIQLYKSER----EVLVYL-------------------------------THLNVID 447 (1023)
T ss_dssp ECTTSCEEE-------CSSCCGGGHHHHHHHH----HHHHHH-------------------------------HHHCHHH
T ss_pred CCCCccHHH-------HhccchHHHHHHHHHH----HHHHHH-------------------------------hccCHHH
Confidence 000000000 001111 222 22 222211 1111111
Q ss_pred hhHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHH
Q 000201 1078 KRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLAS-----SSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1078 ~~~~vl~~L~~~~--~D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~-----~~~~~R~~A~~~L~~l 1149 (1866)
....+++.+.... .+.+|..|++++-++++++.+... ...+++|.+++.++..+.+ +...+|..++.++|+.
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 1112222222222 246899999999999999986554 3678999999988887652 3345677788899887
Q ss_pred HHHhc--cccccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhH-------HhhHhhHHHHHHHhhcCCcHHHHH
Q 000201 1150 VRKLG--ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL-------LSFMDELIPTIRTALCDSILEVRE 1220 (1866)
Q Consensus 1150 v~~~~--~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l-------~~~l~~ll~~l~~~L~d~~~~vr~ 1220 (1866)
.+.+. +..++.++..+.+++.++++.+...||.++..+...+..... .+|++.++..+.....+-++.-+.
T Consensus 528 ~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 76653 346788888888899888889999999999999888765432 468899998888888777788888
Q ss_pred HHHHHHHHHHHHhchhh-HhhHHHHHHHhccCCCchhHHHHHHHHHhhc--cccccc------hhhhhhhhcCCccchhH
Q 000201 1221 SAGLAFSTLFKSAGMQA-IDEIVPTLLHALEDDQTSDTALDGLKQILSV--RTTAVL------PHILPKLVHLPLSAFNA 1291 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g~~~-~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~--~~~~il------p~Lip~L~~~~~~~~~~ 1291 (1866)
...++++.+....+... ...++..|+..+ ...+.+++.. ....++ ..+.+ ..
T Consensus 608 ~lyeai~~vi~~~~~~~~~~~~l~~L~~~~---------~~~~~~l~~~~~~~~~~~~d~~~~~~l~~----------il 668 (1023)
T 4hat_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLP---------NMAWDTIVEQSTANPTLLLDSETVKIIAN----------II 668 (1023)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTHHH---------HHHHHHHHHHHHHCTTGGGCHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHHhH---------HHHHHHHHHHHhcCchhhcCHHHHHHHHH----------HH
Confidence 88889999988776432 233333332211 1111122110 000000 11111 12
Q ss_pred HHHHHHHHHhCCCchhhHhhHHHHHHHhcCCC-----------------CHH------HHHHHHHHHhHhhhccch----
Q 000201 1292 HALGALAEVAGPGLNFHLGTILPALLSAMGDD-----------------DMD------VQSLAKEAAETVTLVIDE---- 1344 (1866)
Q Consensus 1292 ~al~~La~~~g~~l~~~l~~il~~L~~~l~~~-----------------~~~------vr~~a~~~l~~l~~~~~~---- 1344 (1866)
+.+++++...|..+.+++..+++.+++..+.- .+. +|....+.+...+....+
T Consensus 669 ~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~ 748 (1023)
T 4hat_C 669 KTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDV 748 (1023)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 35566777788999999998888887542211 111 222233333333332221
Q ss_pred --hcHHHHHHHHHhccCCCchhHHHH-HHHHHHHHHhhccchhhhhHHHHHHHHHH----HhCC---CChhHHHHHHHHH
Q 000201 1345 --EGVESLVSELLKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLSD---SDSTTVAAAWEAL 1414 (1866)
Q Consensus 1345 --~~~~~ll~~L~~~l~~~~~~vR~~-a~~~l~~l~~~~~~~~~~~~~~il~~L~~----ll~d---~~~~v~~~A~~aL 1414 (1866)
.-+++++..++.......+..|.. .+.+...++..-+..+.+.++.++..++. ++++ ..++.|..-+.-+
T Consensus 749 ~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll 828 (1023)
T 4hat_C 749 VKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLL 828 (1023)
T ss_dssp HHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 235666666666555555555544 45566666666666677777888777764 4543 5677888888777
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELI 1494 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~ 1494 (1866)
.++..+.+...+. ++ +..+..++...+-++.....++-..+...+.++.
T Consensus 829 ~~~~~~~f~~~~~---------------------------~~----~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll 877 (1023)
T 4hat_C 829 KVINEKSFAAFLE---------------------------LP----PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLV 877 (1023)
T ss_dssp HHHHHHCTHHHHT---------------------------SC----HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHChHHHHc---------------------------CC----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 7777665432211 00 0112223444445566666677677777776666
Q ss_pred hhcC--------hhhhhhhhhhhhHHHHHHhcCCC
Q 000201 1495 EVTS--------EQSLKEFVIPITGPLIRIIGDRF 1521 (1866)
Q Consensus 1495 ~~~~--------~~~l~~~v~~i~~~Li~~l~~~~ 1521 (1866)
.... ..-++.|...++.-++.++.|..
T Consensus 878 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 878 KNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 5432 11234455556666666676653
No 39
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=1.8e-14 Score=165.81 Aligned_cols=191 Identities=16% Similarity=0.223 Sum_probs=165.0
Q ss_pred HcCCChhHHHHHHHHHHHHHhhhC-cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHH
Q 000201 584 MKSDKYGERRGAAFGLAGVVKGFG-ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 662 (1866)
Q Consensus 584 ~~~~~~~~R~~A~~~L~~l~~~~g-~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~l 662 (1866)
.++++|.+|++|+.+|..++.+.+ ...-...++++.|...+.++.+..+|.+|+.+++.++..++..|.+|+..++|.+
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 368899999999999999998732 1111224688888888863467899999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhC-hhh-HHhhhcchhHH
Q 000201 663 LVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQ-LSQCLPKIVPK 740 (1866)
Q Consensus 663 l~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~-~~~-~~~~l~~iv~~ 740 (1866)
+..++|++..||+++..++..++...+ ++.++|.+...+++++|++|..++..|+.++... |+. ...+++.++|.
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTS 180 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 999999999999999999999998764 5789999999999999999999999999987765 443 56788999999
Q ss_pred HhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHH
Q 000201 741 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 777 (1866)
Q Consensus 741 l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~ 777 (1866)
+..+++|++++||.+|..+++.++..+++..+..+++
T Consensus 181 l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 181 LVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999988655554444
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.59 E-value=1.4e-12 Score=173.29 Aligned_cols=453 Identities=12% Similarity=0.058 Sum_probs=309.9
Q ss_pred HHcCCChhHHHHHHHHHHHHHhhhCcch-h-hhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhH
Q 000201 583 LMKSDKYGERRGAAFGLAGVVKGFGISS-L-KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQM 658 (1866)
Q Consensus 583 L~~~~~~~~R~~A~~~L~~l~~~~g~~~-l-~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~l 658 (1866)
++.++++.+|..|+..|..++....... + ...++++.|.+.+.+..++..+..|+.++..++.... ....+ ...
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--~~~~i~~~g~ 99 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGG 99 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--HHHHHHTTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHHHHHHcCC
Confidence 3346677889999999998887543111 1 1125778888888776677888888888887764321 11111 258
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhh--H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh-h
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-C 733 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~--v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~-~ 733 (1866)
+|.+..++.++++.+|..|.+++..++....... + ...+|.+++.|.+++++.+..++.+|..++...++.-.. .
T Consensus 100 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~ 179 (644)
T 2z6h_A 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179 (644)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8999999999999999999999999987643221 2 468999999999999999999999999999765433111 1
Q ss_pred hcchhHHHhhhccCCC-hHHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCc
Q 000201 734 LPKIVPKLTEVLTDTH-PKVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDA 808 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~-~~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~ 808 (1866)
-...++.++.++.+.+ ..++..++.+|..++..-.+. .+ ...++.|.+.+.+++..++ .++..|....... ...
T Consensus 180 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~-~~~ 258 (644)
T 2z6h_A 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-TKQ 258 (644)
T ss_dssp HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC-TTC
T ss_pred HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc-hhh
Confidence 1266888888888654 567889999999887532221 12 3578999999988877666 4555555432211 111
Q ss_pred chhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHh
Q 000201 809 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 809 ~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~ 885 (1866)
.....++|.|.+.+.+.++++|..++.++++++.. .+..... .-...++.|..++.+. .+.+|..++.+|+.++.
T Consensus 259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 23457899999999999999999999999999862 2111111 1123677777777653 37999999999999975
Q ss_pred hcCCC-C------hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-H--HHHHHHHHHHHhccCC---------
Q 000201 886 GMGEE-N------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-Y--FEHILPDIIRNCSHQR--------- 946 (1866)
Q Consensus 886 ~~g~~-~------~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~--l~~ll~~l~~~l~~~~--------- 946 (1866)
..+++ . ....+|.|.+.+.+..+..++..++..|+.++..-... . -...+|.+++.+.+.+
T Consensus 337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~ 416 (644)
T 2z6h_A 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416 (644)
T ss_dssp SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence 43321 0 12578889888887665668999999998876532111 1 1345666666655433
Q ss_pred -------------hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc-ccch--
Q 000201 947 -------------ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL-- 1010 (1866)
Q Consensus 947 -------------~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~-~~~i-- 1010 (1866)
..+++.++.++..++........-.-...+|.+...+.+.+++++..+..++..+...-. ...+
T Consensus 417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~ 496 (644)
T 2z6h_A 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496 (644)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred ccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345666677777776543222111123578999999999999999999988887664200 0011
Q ss_pred hchHHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 1011 PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 1011 ~~llp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
...++.+.+.+.+++..+|..+...++.+.
T Consensus 497 ~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 497 EGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 114567777788899999999999998863
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.59 E-value=3e-12 Score=170.04 Aligned_cols=468 Identities=14% Similarity=0.075 Sum_probs=316.9
Q ss_pred cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc--HHhHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcH
Q 000201 614 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY--VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSA 690 (1866)
Q Consensus 614 ~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~--v~~llp~ll~~~~D-~~~~VR~~a~~al~~i~~~l~~ 690 (1866)
.+.++.|...+.+ .++..|+.|+.+++.++...... ... ...+++.+...+.+ ++..+|..+..++..+...-..
T Consensus 13 ~g~i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 13 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp TTTHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hchHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3568888888875 46789999999999998754311 111 12567888877765 4899999999999877654221
Q ss_pred hh-H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 691 QG-V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 691 ~~-v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.. + ...+|.+++.|.+++..+|..|+.+|..++...+...... -..++|.+++++.+.+++++..++.+|..++..
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 11 1 3578999999999999999999999999998754332221 147899999999999999999999999998852
Q ss_pred ccch--hH--HhHHHHHHHhhCCCCh-hHH-HHHHHHHhccccccCCcc-hhhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000201 767 IKNP--EI--ASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGN 839 (1866)
Q Consensus 767 i~~~--~i--~~lv~~L~~~l~d~~~-~vr-~al~~L~~~~~~~~~~~~-~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~ 839 (1866)
..+. .+ ...++.|.+.+.+++. .++ .++..+............ .-...+|.+.+.+.+.+..++..++.++.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2110 11 3568888888887653 333 344444443222111111 112468889999999999999999999999
Q ss_pred HhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCC-CHHHHHH
Q 000201 840 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDN-SNVERSG 914 (1866)
Q Consensus 840 l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~-~~~~R~~ 914 (1866)
++...... .....+++.|..++.+.++.+|..++.+|+.++..-.+. .-...++.|+..+.+.. ...++..
T Consensus 251 L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 251 LSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 98743221 223468899999999999999999999999998642111 01246777777776533 2568889
Q ss_pred HHHHHHHHHHHhChh-H------HHHHHHHHHHHhccCC-hhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhccC
Q 000201 915 AAQGLSEVLAALGTV-Y------FEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLAD 985 (1866)
Q Consensus 915 a~~~L~~l~~~~g~~-~------l~~ll~~l~~~l~~~~-~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~d 985 (1866)
++.+|+.++...+.. . ....+|.+.+.+.+++ +.+|..++.+++.++..-... .... ..++|.++..+.+
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhc
Confidence 999999886543321 1 1356788888888774 799999999999998654322 1121 3466767666654
Q ss_pred C----------------------ChHHHHHHHHHHHHHHHhhcc-cch--hchHHhHhcccCCCchHHHHHHHHHHHHHH
Q 000201 986 E----------------------NESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 986 ~----------------------~~~VR~~a~~al~~i~~~~~~-~~i--~~llp~l~~~l~d~~w~vR~~s~~ll~~ll 1040 (1866)
. +++++..+..++..+...-.. ..+ ...+|.+...+.+.+..++..+...++.+.
T Consensus 406 ~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3 345666666666655432110 011 125778888888888999999988888764
Q ss_pred HHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH
Q 000201 1041 FKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL 1116 (1866)
Q Consensus 1041 ~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l 1116 (1866)
.. ..... .+...| .++.|.....+.+..||+.|..+++.++...+..+
T Consensus 486 ~~---------------------~~~~~-~i~~~g------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 486 QD---------------------KEAAE-AIEAEG------ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp TS---------------------HHHHH-HHHHTT------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred cC---------------------HHHHH-HHHHcC------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 10 01111 122222 24445555788899999999999999987765433
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=8.9e-13 Score=172.86 Aligned_cols=509 Identities=14% Similarity=0.076 Sum_probs=318.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+..+...+.+++...|..+..-+-.+ .+-++.+...++.+++.+.+++...|+.+-..+..++...++.. ..++
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~--~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~i 109 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM--HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMT 109 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH--HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH--HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHH
Confidence 33444455555555555443222222 22344456677788888889999988887777777776554432 2456
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHH
Q 000201 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 739 ~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
..+.+-++|+++.+|..|.++|+.++. ......++|.+.+.+.|+++++| .|+..+..... ........+++.
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~ 183 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPA 183 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGG
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHH
Confidence 677888899999999999999999872 22347788999999999999998 45555543211 111234467788
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc---------------CCCHhHHHHHHHHHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGS 882 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~---------------d~~~~vR~~a~~aL~~ 882 (1866)
+...+.|.++.++..|+.++..++.. ++ +...++..++|.+...+. .+++-.+..+.++++.
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~--~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~ 260 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCER--SP-DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI 260 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCS--HH-HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHh--Ch-HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence 88899999999999999999998762 21 112233344454444433 2467788888888888
Q ss_pred HHhhcCC--CChhhHHHHHHHhcccC--CCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHH
Q 000201 883 LIRGMGE--ENFPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 958 (1866)
Q Consensus 883 l~~~~g~--~~~~~l~~~L~~~L~~~--~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~ 958 (1866)
+...-.+ +.+.++++.+....... .+..+...++.++..+.. ........++.+...+.++++++|..++..++
T Consensus 261 l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~ 338 (618)
T 1w63_A 261 LGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLL 338 (618)
T ss_dssp HTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 7753111 12223444443322111 122345555555544211 11122345566777788889999999999999
Q ss_pred HhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHH
Q 000201 959 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1038 (1866)
Q Consensus 959 ~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ 1038 (1866)
.++...+..|.+|.. .++.++.|++..||..+++.+..+++ ...++.+++.+...+.+.+..+|..++..++.
T Consensus 339 ~i~~~~p~~~~~~~~----~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 339 KTVQTDHNAVQRHRS----TIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHHHGGGHH----HHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHH----HHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999887776666654 46677889999999998887776654 33456677777777777788899999999999
Q ss_pred HHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHH
Q 000201 1039 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE 1118 (1866)
Q Consensus 1039 ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~ 1118 (1866)
+..+.++ ..+.+ ++.+...+.+....++..++..+..++...|.....
T Consensus 412 la~k~~~----------------~~~~~----------------v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~ 459 (618)
T 1w63_A 412 AAEKYAP----------------SKRWH----------------IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY 459 (618)
T ss_dssp HHHSSCC----------------CHHHH----------------HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH
T ss_pred HHHHhCc----------------cHHHH----------------HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH
Confidence 8654321 11111 222222222222334555666777777766754444
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccc---------ccc-chHHHHhcccC--CCCccchhhHHHHHHH
Q 000201 1119 IMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---------VLP-SIIPILSRGLK--DPSASRRQGVCIGLSE 1186 (1866)
Q Consensus 1119 ~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~~---------~l~-~llp~L~~~L~--d~~~~vr~~a~~~L~~ 1186 (1866)
.++.+...+.... ........+++++|+....+... +.| .+++.+...++ ..++.+|..++.++..
T Consensus 460 ~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~K 537 (618)
T 1w63_A 460 TVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMK 537 (618)
T ss_dssp HHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5555555543321 23344456899999998765321 112 23444444443 4577889999988888
Q ss_pred HHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Q 000201 1187 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1230 (1866)
Q Consensus 1187 li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~ 1230 (1866)
+....+. ..+.+...+.....+.+.+||+.|...+..+.
T Consensus 538 l~~~~~~-----~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 538 LSTRFTC-----TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHTTCSS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCcc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 7654431 12444455556677899999999987665543
No 43
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.58 E-value=5.2e-10 Score=152.70 Aligned_cols=585 Identities=10% Similarity=0.056 Sum_probs=345.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHHhhhhcCCC----ChHHHHH
Q 000201 380 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIMT 455 (1866)
Q Consensus 380 ~~~vr~~aa~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~----~~~~~~~ 455 (1866)
++..|+.|.+.+..+- ..|+.+.....-+. .+. . .+.++|..++..|+.....++++ +...+..
T Consensus 21 d~~~r~~A~~~L~~~q-~sp~aw~~~~~iL~--------~~~-~--~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~ 88 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLR-SSSTGWKICHEIFS--------EKT-K--YKPSTRLICLQTLSEKVREWNNESNLLELQMIRD 88 (980)
T ss_dssp CHHHHHHHHHHHHHHH-HSTTHHHHHHHHTT--------CTT-T--SCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-cChhHHHHHHHHHh--------CCC-C--CCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence 7889999888887765 45777644333331 110 0 13589999999999887777887 6666656
Q ss_pred HHHhhhc----CCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCCCCChhhhhhHHHHHHHHHHHHhhhhccC
Q 000201 456 FLISRAL----ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 531 (1866)
Q Consensus 456 fli~~~l----~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~~~~~~~~~~vr~~av~~l~~i~~~l~~~ 531 (1866)
+++.... .+...-||.++..+...+.....++.|+.+++-+-..+..... ...-......+..|...+...
T Consensus 89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~-----~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ-----SEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh-----hHHHHHHHHHHHHhHHHHHhc
Confidence 6554221 1346789999999888887777778898888866666543111 011122233333333332211
Q ss_pred C--------c------------chHHHHHHHHHhcC----CCcHHHHHHHHhhhhhhhHhhhhh---hHHHHHHHHHHHH
Q 000201 532 D--------P------------KVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDE---APTLVSRLLDQLM 584 (1866)
Q Consensus 532 ~--------~------------~~~~l~~~l~~~l~----~~~~~v~~~~~~~l~~lv~~~~~~---~~~~l~~ll~~L~ 584 (1866)
. . .++.+++.....|. ..++.+...+.+|+...+.-..-. ...+++.++..+
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L- 242 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL- 242 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT-
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc-
Confidence 0 0 02223444444442 256678888888887766533311 245666666444
Q ss_pred cCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHH--HHHH----hCCCcHHHHHHHHHHHHHHHHHhCc---------
Q 000201 585 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLGR--------- 649 (1866)
Q Consensus 585 ~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L--~~~i----~~~~~~~~r~~al~al~~L~~~l~~--------- 649 (1866)
. +...|..|+.+|..++..... .-....++..+ ...+ .+..|...+++....+..+++.+-.
T Consensus 243 ~--~~~~r~~A~ecL~ei~~k~~~-~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~ 319 (980)
T 3ibv_A 243 Q--IEELRCAACETMTEIVNKKMK-PLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELS 319 (980)
T ss_dssp T--SHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--C
T ss_pred C--ChHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 2 357899999999999875321 11111223222 1112 1134555555444444444332110
Q ss_pred -----CchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc---H-----hh----HHhHHHHHHhhcC---CCCh
Q 000201 650 -----LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QG----VKLVLPSLLKGLE---DKAW 709 (1866)
Q Consensus 650 -----~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~---~-----~~----v~~llp~L~~~L~---~~~w 709 (1866)
...+.+..++|.++.++++++.+|-..+...+..+...+. . .. +..+++.++..+. +.+|
T Consensus 320 ~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~ 399 (980)
T 3ibv_A 320 PELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEW 399 (980)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 0125677899999999999999998888776666554321 1 11 2445555555553 2233
Q ss_pred -------------hhHHHHHHHHHHHHhhChhhHHhhhc-chhHHHhhhcc---CCChHHHHHHHHHHHHHHhhccchhH
Q 000201 710 -------------RTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPEI 772 (1866)
Q Consensus 710 -------------~~r~~a~~~L~~l~~~~~~~~~~~l~-~iv~~l~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~i 772 (1866)
..|+....++..++--.++....++- .+.+.+.+.+. ..+...+++|..+|+.+++.+++...
T Consensus 400 ~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~ 479 (980)
T 3ibv_A 400 DDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA 479 (980)
T ss_dssp CCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence 23444444444444444554433111 23333334442 34577889999999999987764211
Q ss_pred HhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhhcCCC
Q 000201 773 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTEP 847 (1866)
Q Consensus 773 ~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~-----d~~~~vr~~a~~~l~~l~~~l~~~ 847 (1866)
. . ....+.++.+++.+.+.++ +..+.+|..++.+++..++.+...
T Consensus 480 ~-----------------------------~-~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 480 F-----------------------------F-NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp T-----------------------------B-CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC
T ss_pred c-----------------------------c-CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0 0001123334455544443 567899999999999999877542
Q ss_pred cchhhhHhhhhHHHHH--HhcCCCHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccC----C-----------
Q 000201 848 KDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N----------- 907 (1866)
Q Consensus 848 ~~l~~~~~~ll~~L~~--~l~d~~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~----~----------- 907 (1866)
..|++.+++.+.. .+.++++.||..|+.++..+++..... +.+.++..+...+... .
T Consensus 530 ---~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 530 ---SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp ---CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred ---chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhh
Confidence 2578888888888 888899999999999999999988764 5555666555444411 1
Q ss_pred -----CHHHHHHHHHHHHHHHHHhCh--h----HHHHHHHHHHHHhc----cC----ChhHH-hHHHHHHHHhhhhhchh
Q 000201 908 -----SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 908 -----~~~~R~~a~~~L~~l~~~~g~--~----~l~~ll~~l~~~l~----~~----~~~vR-~~al~~l~~L~~~~g~~ 967 (1866)
....+....+++|.++...+. + +++.+++.+++.+. .. +...+ ...+.+++.++..+...
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 012466788999999987663 2 55666666554432 21 11111 13466677888766421
Q ss_pred ------hHhHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhc
Q 000201 968 ------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1019 (1866)
Q Consensus 968 ------f~~~l~~il~~ll~~l~--d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~ 1019 (1866)
+...+.++++.++..+. ..+..||+++..++..++..++.. +..++|.+..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~ 745 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLIS 745 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHH
Confidence 44566777777777665 467899999999999999887665 3334444433
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.56 E-value=2e-12 Score=168.43 Aligned_cols=456 Identities=12% Similarity=0.068 Sum_probs=301.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcc-h-hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-S-LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~-~-l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
++.+.. ++.++++.+|..|+..|..+....... . +...+.++.|.+.+.+..++..+..+..++..++.... ...
T Consensus 19 i~~Lv~-lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--~~~ 95 (529)
T 1jdh_A 19 IPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLL 95 (529)
T ss_dssp HHHHHH-HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--HHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--hHH
Confidence 444443 345667788888888888887643211 1 11225677888877665577888888888888764321 111
Q ss_pred cH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhCh
Q 000201 654 YV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 727 (1866)
Q Consensus 654 ~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~ 727 (1866)
.+ ...+|.+...+.++++.++..+.+++..++..-... .+ ...+|.+++.+.+++|+++..++.+|..++...+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 12 258899999999999999999999999998753321 22 5689999999999999999999999999987654
Q ss_pred hhHHh-hhcchhHHHhhhccCCCh-HHHHHHHHHHHHHHhhccch-hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhcc
Q 000201 728 QQLSQ-CLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 728 ~~~~~-~l~~iv~~l~~~L~D~~~-~VR~aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~ 801 (1866)
+.-.. .-...++.++.++.+.++ .++.+++.+|..++..-.+. .+ ...+|.|.+.+.+++..++ .++..+....
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 33111 112567788888876654 45667888888887532211 12 4678999999988877665 4555555422
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcC--CCHhHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVD--PIPEVRSVAAR 878 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d--~~~~vR~~a~~ 878 (1866)
.... .......++|.+.+.+.+.++++|..++.++++++.. .+...... -...++.+.+.+.+ .++.+|..++.
T Consensus 256 ~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 256 DAAT-KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp TTCT-TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCh-hhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 1111 1123457899999999999999999999999999762 21111111 12356777777764 34899999999
Q ss_pred HHHHHHhhcCCC-----C--hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh-HH--HHHHHHHHHHhccCChh
Q 000201 879 AIGSLIRGMGEE-----N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRAS 948 (1866)
Q Consensus 879 aL~~l~~~~g~~-----~--~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-~l--~~ll~~l~~~l~~~~~~ 948 (1866)
+|+.++...++. . -...+|.|...+.++.+..+|..++..++.++..-... .+ ..++|.+++.+.+.++.
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 999997543321 0 12467888888887666568889999998887532111 11 35678888877776666
Q ss_pred HHhHHHH----------------------HHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 000201 949 VRDGYLT----------------------LFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH 1004 (1866)
Q Consensus 949 vR~~al~----------------------~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~ 1004 (1866)
+|..+.+ ++..++..... ...+ ...++.+...+.+++++++..+..++..+...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~--~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH--HHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 6664443 44444432111 1111 24678899999999999999999888776532
Q ss_pred hc-ccch--hchHHhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1005 YA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1005 ~~-~~~i--~~llp~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
-. ...+ ...++.+...+.+++..+|..+...+..+
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 00 0011 12457777778888999998888777653
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.54 E-value=2.1e-11 Score=159.91 Aligned_cols=474 Identities=12% Similarity=0.073 Sum_probs=301.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHH
Q 000201 618 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 697 (1866)
Q Consensus 618 ~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ll 697 (1866)
..+.+++.+++ ...|..+..++..+ +.. -......++..+.+-+.|+++.+|-.|..++..+. .++-.+.++
T Consensus 73 ~~vik~~~s~~-~~~Krl~Yl~~~~~---~~~-~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~ 144 (618)
T 1w63_A 73 LECLKLIASQK-FTDKRIGYLGAMLL---LDE-RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLA 144 (618)
T ss_dssp HHHHHHHHSSS-HHHHHHHHHHHHHH---CCC-CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHcCCc-hHHHHHHHHHHHHH---hCC-CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHH
Confidence 33445556544 44444443333333 222 12234567778888899999999999999998885 345558889
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhHHhH
Q 000201 698 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASL 775 (1866)
Q Consensus 698 p~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i~~l 775 (1866)
|.+...+.++++.+|+.|+.+++.+....|+.+ +.+++.+..++.|.++.|+.+|+.+|..++..-.+ ..+..+
T Consensus 145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999999999999888654 36777788899999999999999999999854221 134566
Q ss_pred HHHHHHhhCC---------------CChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhc------CCCHHHHHHH
Q 000201 776 VPTLLMGLTD---------------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKA 833 (1866)
Q Consensus 776 v~~L~~~l~d---------------~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~------d~~~~vr~~a 833 (1866)
+|.+.+.+.+ +++..+ ..++.+..... .+......+.+.+.+.+. +.+..+...+
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR---NDDDSSEAMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT---TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 7766655432 233333 23333332111 111112333444444332 2345777777
Q ss_pred HHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHH
Q 000201 834 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 913 (1866)
Q Consensus 834 ~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~ 913 (1866)
+.++..+.. . .......++.+..++.++++.+|..|..+|+.++...+ +.+....+.++..+.++ +..+|.
T Consensus 298 ~~~i~~l~~---~----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~~~~~~~~~i~~~l~d~-d~~Ir~ 368 (618)
T 1w63_A 298 VLTIMDIKS---E----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-NAVQRHRSTIVDCLKDL-DVSIKR 368 (618)
T ss_dssp HHHHHHSCC---C----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-HHHGGGHHHHHHGGGSS-CHHHHH
T ss_pred HHHHHhcCC---C----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHccCC-ChhHHH
Confidence 777766422 1 11233467778888898999999999999999998533 33455566777777654 456899
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHH
Q 000201 914 GAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 993 (1866)
Q Consensus 914 ~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~ 993 (1866)
.++..+..++.. +.++.+++.+...+.+.+.++|..++..++.++..++..+..|++.++ +.+.+....++..
T Consensus 369 ~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll----~lL~~~~~~v~~~ 441 (618)
T 1w63_A 369 RAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIM----RVLTTAGSYVRDD 441 (618)
T ss_dssp HHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH----HHHHHTGGGSCSS
T ss_pred HHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH----HHHHhccchhHHH
Confidence 999888776543 335677888888888889999999999999999988777766765554 4444444455555
Q ss_pred HHHHHHHHHHhhccc---chhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCC---cchHHHH
Q 000201 994 ALGAGHVLVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG---ASTEAHG 1067 (1866)
Q Consensus 994 a~~al~~i~~~~~~~---~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~---~~~e~~~ 1067 (1866)
+...+..++...+.. .+..+...+.+.. ........+++++|+....+.+. ..++++ .....
T Consensus 442 ~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~--------~~~~~~~~~~~~~~-- 509 (618)
T 1w63_A 442 AVPNLIQLITNSVEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSG--------QCEEEEPIQVTEDE-- 509 (618)
T ss_dssp HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTC--------CCSSSCCCCCCHHH--
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhccc--------ccccccccCCCHHH--
Confidence 666666776654322 2223333333221 23444557899999986554321 001100 00100
Q ss_pred HHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 000201 1068 RAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1147 (1866)
Q Consensus 1068 ~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~ 1147 (1866)
+. +++..+... ...+..+|..++.++..+....|.. .+.+...+-.+..+.+.++|.-|...+.
T Consensus 510 --~~---------~~l~~~l~~-~~~~~~vr~~~lta~~Kl~~~~~~~----~~~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 510 --VL---------DILESVLIS-NMSTSVTRGYALTAIMKLSTRFTCT----VNRIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp --HH---------HHHHHHHHS-TTCCHHHHHHHHHHHHHHHTTCSSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HH---------HHHHHHHhc-cCCCHHHHHHHHHHHHHHHHhCcch----HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 01 122222111 1567899999999998888777642 2333333444566788899999888765
Q ss_pred HHH
Q 000201 1148 ELV 1150 (1866)
Q Consensus 1148 ~lv 1150 (1866)
-+.
T Consensus 574 ll~ 576 (618)
T 1w63_A 574 LFK 576 (618)
T ss_dssp HHH
T ss_pred HHc
Confidence 543
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.52 E-value=6.5e-12 Score=163.49 Aligned_cols=461 Identities=12% Similarity=0.061 Sum_probs=305.9
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhh--h---hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC-cch
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISS 610 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~--~---~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g-~~~ 610 (1866)
..++.++..|.++++.++..++.++..+...... . ....++.++..|..++++..|+.|+..|..+..... ...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 4678888888889999999999988776643321 1 235677777777666688999999999999876422 122
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+...+.++.|.+.+.+. ++..+..|+.++..++...+..-.... ...+|.+...+.+++..++..+..++..++..-+
T Consensus 97 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 22346888998888775 467888899999999886443212222 4689999999999999999999999988765211
Q ss_pred Hh--h-H-HhHHHHHHhhcCCCC-hhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 690 AQ--G-V-KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 690 ~~--~-v-~~llp~L~~~L~~~~-w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
.. . . ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+..++.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 1 1 235677777776544 45666788888888864321111111368899999999999999999999999998
Q ss_pred hhccch-hHHhHHHHHHHhhCCCChhHH-HHHHHHHhcccccc--CCcchhhhHHHHHHHhhcC--CCHHHHHHHHHHHH
Q 000201 765 SVIKNP-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRE--RSAETKKKAAQIVG 838 (1866)
Q Consensus 765 ~~i~~~-~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~--~~~~~l~~l~p~L~~~l~d--~~~~vr~~a~~~l~ 838 (1866)
...... ....++|.|.+.+.+++..++ .++..+........ ...-.-...+|.+.+.+.+ .+++++..++.+++
T Consensus 256 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 764332 236789999999998888877 45555554322110 0000112357777777764 34899999999999
Q ss_pred HHhhhcCCCcchh-h-hHhhhhHHHHHHhcCCC-HhHHHHHHHHHHHHHhhcCCC-C--hhhHHHHHHHhcccCCCHHHH
Q 000201 839 NMCSLVTEPKDMI-P-YIGLLLPEVKKVLVDPI-PEVRSVAARAIGSLIRGMGEE-N--FPDLVSWLLDALKSDNSNVER 912 (1866)
Q Consensus 839 ~l~~~l~~~~~l~-~-~~~~ll~~L~~~l~d~~-~~vR~~a~~aL~~l~~~~g~~-~--~~~l~~~L~~~L~~~~~~~~R 912 (1866)
+++......+... . .....+|.|..++.++. +.+|..++.+++.++..-... . -..++|.|.+.+.+. +..+|
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 414 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA-HQDTQ 414 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH-HHHHC
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHH-hHHHH
Confidence 9976311100011 1 11246788899999876 699999999999988532111 0 124677777766542 23344
Q ss_pred HHHHHHH----------------------HHHHHHhCh-hHH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchh
Q 000201 913 SGAAQGL----------------------SEVLAALGT-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 913 ~~a~~~L----------------------~~l~~~~g~-~~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
..+++++ ..++..... ..+ ...++.++..+.++++.++..+..++..++.. ..
T Consensus 415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~ 492 (529)
T 1jdh_A 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE 492 (529)
T ss_dssp -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HH
T ss_pred HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HH
Confidence 4444333 322221100 011 24568888999999999999999999988743 22
Q ss_pred hHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 968 FQNYL--QQVLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 968 f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
....+ ...++.+...+.+++++||..+..++..+
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 22222 24678889999999999999998887654
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.49 E-value=7.1e-12 Score=160.90 Aligned_cols=379 Identities=14% Similarity=0.119 Sum_probs=269.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHH
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
-++-+.+.+...+..++..|..+++.+.+.-.. +.+ ..++|.|++.|.+ ++..++..|+.+|++++.+.++...
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 356677788889999999999999988753221 222 4579999999975 4588999999999999988776543
Q ss_pred hhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChh------HHHHHHHHHhc
Q 000201 732 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 800 (1866)
Q Consensus 732 ~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~------vr~al~~L~~~ 800 (1866)
... ...+|.|+.+|.++++.||..|+++|+.++..-.+ ..+ ...++.|...+..++.. .+.+...+...
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 322 26899999999999999999999999999853221 111 35678888888776532 23444444432
Q ss_pred ccc--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHH
Q 000201 801 TFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAA 877 (1866)
Q Consensus 801 ~~~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~ 877 (1866)
... ..........++|.|.+.+.+.+.+++..++.++.+++.. ....... ....+++.|..++.++++.++..++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 211 1112223467899999999999999999999999999862 2111111 1235788899999999999999999
Q ss_pred HHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---H-HHHHHHHHHHHhccCChhH
Q 000201 878 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---Y-FEHILPDIIRNCSHQRASV 949 (1866)
Q Consensus 878 ~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~-l~~ll~~l~~~l~~~~~~v 949 (1866)
.+|+.++...... .-...++.|...+.+ .+..+|..++.+|+.++...... . -..++|.++..+.+.++.+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9999987532211 011344555555554 44568999999999887533221 1 1357899999999999999
Q ss_pred HhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----c----hhc--hHHhH
Q 000201 950 RDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LPL--LLPAV 1017 (1866)
Q Consensus 950 R~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~----i~~--llp~l 1017 (1866)
|..+..++..++.....+...|+ ..+++++...+...+++++..+++++..+....... . +.. .+..+
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 99999999999876554433344 347899999999999999999999998887633211 0 111 24556
Q ss_pred hcccCCCchHHHHHHHHHHHHH
Q 000201 1018 EDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1018 ~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
+....++|..++..+..++...
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 6666778888988888887765
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.47 E-value=1.5e-11 Score=158.93 Aligned_cols=382 Identities=14% Similarity=0.118 Sum_probs=272.5
Q ss_pred HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChh
Q 000201 655 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 655 v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
+...++.+...+..+++.++..|..++..+.+.-.. +.+ ..++|.|++.|. ++++..+..|+.+|+.++.+.+.
T Consensus 74 ~~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 74 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 334567778888889999999998888887653221 222 458999999996 45689999999999999988766
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChh------HHHHHHHH
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDIL 797 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~------vr~al~~L 797 (1866)
..... -...+|.|+.++.++++.||..|+++|+.++..-.+ ..+ ...++.|+..+.+++.. .+.+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 53222 236899999999999999999999999999853211 111 35688889988876532 23344444
Q ss_pred Hhcccc--ccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHH
Q 000201 798 LQTTFV--NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRS 874 (1866)
Q Consensus 798 ~~~~~~--~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~ 874 (1866)
...... ..........++|.|.+.+.+.+.+++..++.++.+++.. ....... ....+++.|..++.++++.++.
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 432111 1112223467899999999999999999999999999862 2111111 1235788999999999999999
Q ss_pred HHHHHHHHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH-HHHHHHHHHHhccCC
Q 000201 875 VAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQR 946 (1866)
Q Consensus 875 ~a~~aL~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l-~~ll~~l~~~l~~~~ 946 (1866)
.++.+|+.++...... .-...++.|...+.+. +..+|..++.+|+.++...... .. ..++|.++..+.+.+
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 9999999997532211 0123566676666654 4568999999999987643221 11 357899999999999
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhccc----c----hhc--hH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LPL--LL 1014 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~----~----i~~--ll 1014 (1866)
+.+|..+..++..++.....+...++ ..++++++..+...+++++..++.++..+....... . +.. .+
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 99999999999999876544433344 247899999999999999999999998887533211 0 111 34
Q ss_pred HhHhcccCCCchHHHHHHHHHHHHH
Q 000201 1015 PAVEDGIFNDNWRIRQSSVELLGDL 1039 (1866)
Q Consensus 1015 p~l~~~l~d~~w~vR~~s~~ll~~l 1039 (1866)
..++....++|..++..+..++...
T Consensus 471 ~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 471 DKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5566666788899999888888765
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=4.7e-13 Score=153.88 Aligned_cols=199 Identities=20% Similarity=0.286 Sum_probs=162.2
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccc---
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~--- 769 (1866)
..+-|.+.+.+.+++|+.|++|+..|..++++++......+..+++.+...+. |+++.||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445688889999999999999999999998765444556788999999995 99999999999999999988775
Q ss_pred hhHHhHHHHHHHhhCCCChhHHHHH-HHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCc
Q 000201 770 PEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 848 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~d~~~~vr~al-~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~ 848 (1866)
+++..++|.+++.+.|++..+|.+. ..+....- ......++|.+...+++.+|.+|..++.+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYA-----STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-----TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 5678899999999999999898533 33322111 11356789999999999999999999999999876443222
Q ss_pred chhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHH
Q 000201 849 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 897 (1866)
Q Consensus 849 ~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~ 897 (1866)
...+|++.++|.+...+.|++++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999764444443
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.45 E-value=1.9e-11 Score=156.82 Aligned_cols=387 Identities=14% Similarity=0.119 Sum_probs=267.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..+ .+++...+..|.+.+-.++..- +.+.+...+++|.|.+.+...+++..+..|..+++.|+.+-...-.
T Consensus 59 i~~~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44455555 4566778888888887776422 2234445678999999998777788888899999999865432222
Q ss_pred hcHH-hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCCh-----hhHHHHHHHHHHH
Q 000201 653 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v~-~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w-----~~r~~a~~~L~~l 722 (1866)
..+. ..+|.+..++.+++..||+.|.++|..++..-+.. .+ ...++.++..+.+.+. .....++..|..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2232 47999999999999999999999999998643321 11 3467888888876543 3466788888888
Q ss_pred HhhChh-hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc
Q 000201 723 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 723 ~~~~~~-~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~ 801 (1866)
+.+... ........++|.|.+++.+.+++|+..|+++|..++..-. +... . +
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~~---~------------------i---- 270 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---M------------------V---- 270 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHHH---H------------------H----
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhHH---H------------------H----
Confidence 876422 2222345788999999999999999999999999875321 1100 0 0
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
....++|.|...+.+.+..++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|
T Consensus 271 --------~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 271 --------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp --------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred --------HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 0112466677777788888999999999998762 2111111 1124566777888899999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHh
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~ 951 (1866)
+.++...... .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+.+.+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997632211 11257888888887654 56899999999998876555433 34678899999999999999
Q ss_pred HHHHHHHHhhhhhc-----hhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 952 GYLTLFKYLPRSLG-----VQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 952 ~al~~l~~L~~~~g-----~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++.++..+..... ..+..++.. .+..+-....+++++|+..|...+..+
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999988875432 122223322 355566666789999988877665443
No 51
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.44 E-value=4.3e-11 Score=155.99 Aligned_cols=478 Identities=13% Similarity=0.105 Sum_probs=299.7
Q ss_pred HhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 690 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 690 ~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
++.+...++.+++.+.+++...|+.+-..+..+++..++.+ --++..+.+-++|+++.+|..|..+|+.+. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~----~ 140 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVG----S 140 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC----C
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccC----C
Confidence 44556678888899999999999999999988888776553 245667778889999999999999999885 3
Q ss_pred hh-HHhHHHHHHHhh--CCCChhHHH-HHHHHHhccccccCCcchh--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 770 PE-IASLVPTLLMGL--TDPNDHTKY-SLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 770 ~~-i~~lv~~L~~~l--~d~~~~vr~-al~~L~~~~~~~~~~~~~l--~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
++ .+.++|.+.+.+ .|+++++|. |+-.+...-- .+.... ..+++.+.+.+.|+++.|+..|..++..++..
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR---TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 44 478889999999 999999983 4444433110 111122 25788899999999999999999999999873
Q ss_pred cCCCcchhhhHhhhhHHHHHHhcCC-------------CHhHHHHHHHHHHHHHhhcCCC---ChhhHHHHHHHhcccCC
Q 000201 844 VTEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN 907 (1866)
Q Consensus 844 l~~~~~l~~~~~~ll~~L~~~l~d~-------------~~~vR~~a~~aL~~l~~~~g~~---~~~~l~~~L~~~L~~~~ 907 (1866)
++..+.++.+.++..|.+++.++ ++-.+....+.++.+...-.++ .+.++++.++..+.+..
T Consensus 218 --~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 218 --NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPP 295 (621)
T ss_dssp --CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCc
Confidence 33445567777777777766432 4556666666666554311111 12234444443322111
Q ss_pred ---C-------HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHH
Q 000201 908 ---S-------NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 977 (1866)
Q Consensus 908 ---~-------~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~ 977 (1866)
. ..+.-.++.++..+. ...+.....+..+...+.++++++|-.++..+..++...+. .+++....+
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~ 371 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIE 371 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHH
Confidence 0 112223333322221 12234556667777778888999999999999999877652 123444455
Q ss_pred HHHhhcc-CCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q 000201 978 AILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1056 (1866)
Q Consensus 978 ~ll~~l~-d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ 1056 (1866)
.++.++. |++..||..+++.+..+++ +..++.++.++...+.+.+..+|..++..++.+..+.+..
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~---------- 438 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD---------- 438 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS----------
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc----------
Confidence 6677777 8999999888877666553 3445667777777776677788888888888876554311
Q ss_pred CCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCC-
Q 000201 1057 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS- 1135 (1866)
Q Consensus 1057 ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~- 1135 (1866)
.+.+...+.+.+.. ....+...++..+..++.+.|.. +. ..+..++..+.++.
T Consensus 439 ------~~~~v~~Ll~ll~~----------------~~~~v~~ev~~~l~~ii~~~~~~-~~---~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 439 ------YTWYVDTILNLIRI----------------AGDYVSEEVWYRVIQIVINRDDV-QG---YAAKTVFEALQAPAC 492 (621)
T ss_dssp ------THHHHHHHHHHHHH----------------HGGGSCSHHHHHHHHHHGGGCSC-HH---HHHHHHHHHHTSSSC
T ss_pred ------HHHHHHHHHHHHHh----------------hcccchHHHHHHHHHHHhCChhH-HH---HHHHHHHHHHcCccc
Confidence 11222222222211 11112333444455555444432 11 12333445555543
Q ss_pred -HHHHHHHHHHHHHHHHHhccc--ccc-chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhh
Q 000201 1136 -SERRQVAGRALGELVRKLGER--VLP-SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1211 (1866)
Q Consensus 1136 -~~~R~~A~~~L~~lv~~~~~~--~l~-~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L 1211 (1866)
...-..+++++|+....+... ..| .++..+...+...++.+|..++.++..+.... ++ ..+.+...+..+.
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~----~~~~i~~~l~~~~ 567 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE----VKATIQDVLRSDS 567 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG----GHHHHHHHHSSHH
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH----HHHHHHHHHHHHh
Confidence 344456678888887665432 222 45666666666778889999988888775443 22 1233444444455
Q ss_pred c--CCcHHHHHHHHHHHHH
Q 000201 1212 C--DSILEVRESAGLAFST 1228 (1866)
Q Consensus 1212 ~--d~~~~vr~~A~~al~~ 1228 (1866)
. |.+.+||+.|...+.-
T Consensus 568 ~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 5 8999999998865443
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.44 E-value=4.9e-11 Score=154.09 Aligned_cols=387 Identities=14% Similarity=0.119 Sum_probs=266.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---CcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
++.++..+ .+++...+..|...+-.++..- ..+.+...+++|.|.+.+...+++..+..|+.++..++.+......
T Consensus 78 l~~lv~~l-~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33444444 3455667777777776665421 1233345678999999998777788888899999999865432222
Q ss_pred hcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCCh-----hhHHHHHHHHHHH
Q 000201 653 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 722 (1866)
Q Consensus 653 p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w-----~~r~~a~~~L~~l 722 (1866)
..+ ...+|.+..++.+++..||+.|.++|..++..-+.. .+ ...+|.++..|.+.+. .....++..|..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 222 257999999999999999999999999998643221 11 3468888888876543 3466788888888
Q ss_pred HhhChh-hHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhcc
Q 000201 723 AYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 801 (1866)
Q Consensus 723 ~~~~~~-~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~ 801 (1866)
+.+... ........++|.|..++.+.+++|+..|+++|..++..-. .... . +
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~~---~------------------v---- 289 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERIE---M------------------V---- 289 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHHH---H------------------H----
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhHH---H------------------H----
Confidence 876432 2223345788999999999999999999999999875321 1100 0 0
Q ss_pred ccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 802 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 802 ~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
....++|.|...+.+.++.++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|
T Consensus 290 --------~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 290 --------VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp --------HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred --------HhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0113466677777788888999999999998762 2111111 1234678888999999999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHhccCChhHHh
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 951 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l-----~~ll~~l~~~l~~~~~~vR~ 951 (1866)
+.++...... .-..++|.|+..+.+.. ..+|..++.+|+.++.....+.. ...++.+.+.+.++++.++.
T Consensus 360 ~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 360 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9998632211 11257888888887654 56899999999998876555432 24678899999999999999
Q ss_pred HHHHHHHHhhhhhc-----hhhHhHHHH--HHHHHHhhccCCChHHHHHHHHHHHHH
Q 000201 952 GYLTLFKYLPRSLG-----VQFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1001 (1866)
Q Consensus 952 ~al~~l~~L~~~~g-----~~f~~~l~~--il~~ll~~l~d~~~~VR~~a~~al~~i 1001 (1866)
.++.++..+..... ..+..++.. .+..|-....+++++|+..|.+.+..+
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999988765432 122222222 345555666789999998887665543
No 53
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.39 E-value=1.3e-07 Score=128.17 Aligned_cols=376 Identities=11% Similarity=0.120 Sum_probs=222.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcChh-hHHHhHHHHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHhc--cccccchHH
Q 000201 1092 DVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSS-----SERRQVAGRALGELVRKLG--ERVLPSIIP 1163 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~~~~p~-~l~~~l~~l~~~L~~~l~~~~-----~~~R~~A~~~L~~lv~~~~--~~~l~~llp 1163 (1866)
..+|..+++++-++++++..... .-.+++|.+++.|+.....+. ..++...+.++|+..+.+. +..++.++.
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~ 569 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVN 569 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHH
Confidence 46799999999999999865553 345789999999987665431 2234444457776655543 346777788
Q ss_pred HHhcccCCCCccchhhHHHHHHHHHHhhchhh-------HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1164 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-------LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1164 ~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~-------l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+.+++.++++.+...||.++..+...|.... ..+|+..++..+.....+-.++-...-.++++.+....+..
T Consensus 570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 88888889999999999999999888876543 23588888887777777767666666667788887776653
Q ss_pred h-----HhhHHHHHHHhccCCCchhHHHHHHHHHhhcc--cccc------chhhhhhhhcCCccchhHHHHHHHHHHhCC
Q 000201 1237 A-----IDEIVPTLLHALEDDQTSDTALDGLKQILSVR--TTAV------LPHILPKLVHLPLSAFNAHALGALAEVAGP 1303 (1866)
Q Consensus 1237 ~-----~~~ilp~Ll~~L~~~~~~~~al~~l~~il~~~--~~~i------lp~Lip~L~~~~~~~~~~~al~~La~~~g~ 1303 (1866)
. ++.+++.+...| .+++... ...+ +..+.+- .+...+++...|.
T Consensus 650 ~~~~~~i~~Lm~~~~~~w-------------~~l~~~~~~~~~~~~d~~~i~~l~~i----------l~~n~~v~~~~g~ 706 (1073)
T 3gjx_A 650 TVQEHLIEKYMLLPNQVW-------------DSIIQQATKNVDILKDPETVKQLGSI----------LKTNVRACKAVGH 706 (1073)
T ss_dssp HHHHHHHHHHTHHHHHHH-------------HHHHHHHHHCGGGGGCHHHHHHHHHH----------HHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHH-------------HHHHHHhhcCchhccChHHHHHHHHH----------HhhhHHHHhhcch
Confidence 2 222333332222 2222100 0000 1111111 1244456667788
Q ss_pred CchhhHhhHHHHHHHhcCC-----------------CCHH------HHHHHHHHHhHhhhccch------hcHHHHHHHH
Q 000201 1304 GLNFHLGTILPALLSAMGD-----------------DDMD------VQSLAKEAAETVTLVIDE------EGVESLVSEL 1354 (1866)
Q Consensus 1304 ~l~~~l~~il~~L~~~l~~-----------------~~~~------vr~~a~~~l~~l~~~~~~------~~~~~ll~~L 1354 (1866)
.+.+++..+++.+++..+. +.+. +|....+.+...+....+ .-+++++..+
T Consensus 707 ~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~v 786 (1073)
T 3gjx_A 707 PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAV 786 (1073)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHH
Confidence 8999888888876643210 1121 333344444444433221 2245566555
Q ss_pred HhccCCCchhHHHH-HHHHHHHHHhhccchhhhhHHHHHHHHHH----HhC---CCChhHHHHHHHHHHHHHhcCCcchh
Q 000201 1355 LKGVGDNQASIRRS-SAYLIGYFYKNSKLYLVDEAPNMISTLIV----LLS---DSDSTTVAAAWEALSRVVASVPKEVQ 1426 (1866)
Q Consensus 1355 ~~~l~~~~~~vR~~-a~~~l~~l~~~~~~~~~~~~~~il~~L~~----ll~---d~~~~v~~~A~~aL~~l~~~~~~~~l 1426 (1866)
+.......+..|.+ .+.++..++...+..+.+.++.++..++. +++ +..++.|..-+.-+.++....+...+
T Consensus 787 l~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~ 866 (1073)
T 3gjx_A 787 LIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL 866 (1073)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTT
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHH
Confidence 55444444555543 45666677777777778888888888765 354 35677888777777777765543221
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhcCCccccCCcCCC-CCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcC------h
Q 000201 1427 PSYIKVIRDAISTSRDKERRKKKGGPILIPGFCLP-KALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS------E 1499 (1866)
Q Consensus 1427 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g~~~~-~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~------~ 1499 (1866)
. +| ..+..++..++-++.....++-..+...+-++..... .
T Consensus 867 ~--------------------------------l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~ 914 (1073)
T 3gjx_A 867 A--------------------------------IPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQ 914 (1073)
T ss_dssp T--------------------------------SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred c--------------------------------CCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHH
Confidence 1 01 1122233444445555556666666666666654421 1
Q ss_pred hhhhhhhhhhhHHHHHHhcCCCC
Q 000201 1500 QSLKEFVIPITGPLIRIIGDRFP 1522 (1866)
Q Consensus 1500 ~~l~~~v~~i~~~Li~~l~~~~~ 1522 (1866)
.-++.|...++.-++.++.|...
T Consensus 915 ~F~~~~~~~~~~~i~~v~td~~h 937 (1073)
T 3gjx_A 915 SFYQTYFCDILQHIFSVVTDTSH 937 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCchH
Confidence 23445556666666777776543
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=7.7e-12 Score=142.85 Aligned_cols=200 Identities=10% Similarity=0.196 Sum_probs=162.6
Q ss_pred HHHhhcCCCChhhHHHHHHHHHH-HHhhChhhH--HhhhcchhHHHhhhc-cCCChHHHHHHHHHHHHHHhhcc-c----
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK-N---- 769 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~-l~~~~~~~~--~~~l~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~i~-~---- 769 (1866)
.+.+.+.+++|+.|++|+..|+. +++++++.. ...+..++..+.+.+ +|+++.||..|+++++.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667789999999999999999 988776654 445568888999999 89999999999999999998886 2
Q ss_pred hhHHhHHHHHHHhhCCCChhHHH----HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcC
Q 000201 770 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 845 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~d~~~~vr~----al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~ 845 (1866)
++...++|.++..+.|....+++ ++..+... .......+++..+++.+...+++.+|.+|..++.+++.++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 56678999999999999887774 33333331 11111112377899999999999999999999999999998644
Q ss_pred CC-cchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q 000201 846 EP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 899 (1866)
Q Consensus 846 ~~-~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L 899 (1866)
.. ..+.+|+ +.++|.+.+++.|.++.||..|..+++.++..+|++.+..+++.|
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 32 4577899 999999999999999999999999999999999987666666654
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.33 E-value=1.1e-08 Score=133.23 Aligned_cols=498 Identities=14% Similarity=0.072 Sum_probs=304.1
Q ss_pred ChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcC
Q 000201 588 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 588 ~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~ 667 (1866)
+...|+.+..-+..+.. .|.+.. .....+.+++.++ +...|..+..++..+++.- .+.+.-++..+.+-+.
T Consensus 51 ~~~~k~~~l~Kli~l~~-~G~d~s---~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-LGHDID---FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCCCC---SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCCCc---hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence 44455555554443322 343321 2344445566664 4566665555554444321 2345566778888899
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhc--CCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 745 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L--~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L 745 (1866)
|+++.+|-.|..++..+. .++-.+.++|.+.+.+ .|.++.+|+.|+.++..+....|+.+.. +.+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHh
Confidence 999999999999888874 3555688999999999 9999999999999999999988765532 37888899999
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhHHhHHH----HHHHhhCCC-------------ChhHH-HHHHHHHhccccccCC
Q 000201 746 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVP----TLLMGLTDP-------------NDHTK-YSLDILLQTTFVNTVD 807 (1866)
Q Consensus 746 ~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~----~L~~~l~d~-------------~~~vr-~al~~L~~~~~~~~~~ 807 (1866)
+|+++.|+.+|+.++..++..-.. .+..++| .|.+.+.+. ++-.+ ..++.+.. +....+
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~--~~~~~d 273 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--YPPPED 273 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--SSSCSS
T ss_pred CCCCccHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--hCCCCC
Confidence 999999999999999998764321 2233344 343333221 22233 23444332 211112
Q ss_pred cchhhhHHHHHHHhh---cC---------CC--HHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHH
Q 000201 808 APSLALLVPIVHRGL---RE---------RS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 873 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l---~d---------~~--~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR 873 (1866)
......+.+.+.+.+ .+ .+ ..+...++.++..+. . ..++....+..|..++.++++++|
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L~~~~~nir 346 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFLQHRETNLR 346 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHSSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHhcCCCcchH
Confidence 122222333332222 11 11 255555555555442 1 234566778888888988999999
Q ss_pred HHHHHHHHHHHhhcCC-CChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhH
Q 000201 874 SVAARAIGSLIRGMGE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 952 (1866)
Q Consensus 874 ~~a~~aL~~l~~~~g~-~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~ 952 (1866)
..+..++..++...+. +.+....+.++..+..+.+..+|..++..+..++ ..+.++.++..+...+.+.+.+.|..
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~ 423 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREE 423 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999876542 3455566677777773445668888888776654 33467888888888888889999999
Q ss_pred HHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCch--HHHH
Q 000201 953 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW--RIRQ 1030 (1866)
Q Consensus 953 al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w--~vR~ 1030 (1866)
++..++.++..++..+.-|++.++..+-.. ...+...+...+..++...+.- -...+..+.+.+.++.. .+-.
T Consensus 424 ~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~----~~~v~~ev~~~l~~ii~~~~~~-~~~~~~~l~~~l~~~~~~~~li~ 498 (621)
T 2vgl_A 424 IVLKVAILAEKYAVDYTWYVDTILNLIRIA----GDYVSEEVWYRVIQIVINRDDV-QGYAAKTVFEALQAPACHENLVK 498 (621)
T ss_dssp HHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----GGGSCSHHHHHHHHHHGGGCSC-HHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHhCChhH-HHHHHHHHHHHHcCccchHHHHH
Confidence 999999999888877777777665554332 2223333444444454433211 11122233333333332 2334
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Q 000201 1031 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVA 1110 (1866)
Q Consensus 1031 ~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~ 1110 (1866)
.++.++|+....+.+. +.... .+++..++....+.+..||..++.++..+..
T Consensus 499 ~~~wilGEy~~~~~~~------------~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 499 VGGYILGEFGNLIAGD------------PRSSP----------------LIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp HHHHHHHHHTHHHHSS------------TTSCH----------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHhccc------------CCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4557777753322110 00000 1233444444567788999999998888877
Q ss_pred cChhhHHHhHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHH
Q 000201 1111 NTPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1149 (1866)
Q Consensus 1111 ~~p~~l~~~l~~l~~~L~~~l~--~~~~~~R~~A~~~L~~l 1149 (1866)
..|.. .+.+...+-.+.. +.+.++|.-|...+.-+
T Consensus 551 ~~p~~----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 551 LFPEV----KATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HCGGG----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HChHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 66642 2223333323344 78899999888765443
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.28 E-value=1.1e-06 Score=114.26 Aligned_cols=337 Identities=16% Similarity=0.133 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhcc---CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC
Q 000201 711 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 711 ~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~---D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~ 787 (1866)
.|.+|+..||-+-.+..++- +..+.+.|. .+++.+|..|+.+||-+.....++ .+..|...+.+++
T Consensus 374 ~k~sA~aSLGlIh~g~~~~g-------l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~ 442 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLEG-------KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTTH-------HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhccCchHHH-------HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCcc
Confidence 47778888887776654432 222333333 456788888888888887655432 1222222221111
Q ss_pred hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhc
Q 000201 788 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 866 (1866)
Q Consensus 788 ~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~ 866 (1866)
.. -.+ ....+|..|+-.+|.+.. +..+ +.+++.|...+.
T Consensus 443 ~~--------------------------------~~~~~~~~ir~gAaLGLGla~~--GS~~------eev~e~L~~~L~ 482 (963)
T 4ady_A 443 GT--------------------------------SGDEDVDVLLHGASLGIGLAAM--GSAN------IEVYEALKEVLY 482 (963)
T ss_dssp SC--------------------------------CSCHHHHHHHHHHHHHHHHHST--TCCC------HHHHHHHHHHHH
T ss_pred cc--------------------------------ccccccHHHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHh
Confidence 00 000 013567777777777654 2211 246677777888
Q ss_pred CCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHh-ccC
Q 000201 867 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC-SHQ 945 (1866)
Q Consensus 867 d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l-~~~ 945 (1866)
+.+..+|..|+.++|.+.-..|.. +.+..|+..+.++....+|+.++.+||.+. +|.. +..+.+++.+ .+.
T Consensus 483 dd~~~~~~~AalALGli~vGTgn~---~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~---e~~~~li~~L~~~~ 554 (963)
T 4ady_A 483 NDSATSGEAAALGMGLCMLGTGKP---EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQ---ELADDLITKMLASD 554 (963)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCG---GGGHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHhhhhcccCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCCh---HHHHHHHHHHHhCC
Confidence 778888989999999886544432 334444444444445568889988888763 3433 2233444433 357
Q ss_pred ChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhc-ccCCC
Q 000201 946 RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED-GIFND 1024 (1866)
Q Consensus 946 ~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~-~l~d~ 1024 (1866)
++.+|.+++.+++.-..-.|.. ..++.++.. +..|.+++||..|.-++..+.-. ..+ ..|.+.+ ...+.
T Consensus 555 dp~vRygaa~alglAyaGTGn~--~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g-~~e----~v~rlv~~L~~~~ 624 (963)
T 4ady_A 555 ESLLRYGGAFTIALAYAGTGNN--SAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLR-DYT----TVPRIVQLLSKSH 624 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCH--HHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSS-SCS----SHHHHTTTGGGCS
T ss_pred CHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHH---hccCCcHHHHHHHHHHHHhhccC-CHH----HHHHHHHHHHhcC
Confidence 9999999888887655555542 123333332 33578889999998888765322 112 2333333 34567
Q ss_pred chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000201 1025 NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV 1104 (1866)
Q Consensus 1025 ~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~ 1104 (1866)
+|.+|.++...+|.+- .|. ...+++..|.....|.+..||+.|+..
T Consensus 625 d~~VR~gAalALGli~---aGn-------------------------------~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 625 NAHVRCGTAFALGIAC---AGK-------------------------------GLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp CHHHHHHHHHHHHHHT---SSS-------------------------------CCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc---cCC-------------------------------CcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8999999999998751 000 011344444455689999999999999
Q ss_pred HHHHhhcChhhHHHhHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHH
Q 000201 1105 WKTIVANTPKTLKEIMPVLMNTLISSLAS--SSSERRQVAGRALGELV 1150 (1866)
Q Consensus 1105 l~~l~~~~p~~l~~~l~~l~~~L~~~l~~--~~~~~R~~A~~~L~~lv 1150 (1866)
++.+...+.....+.+..+...+.+...+ .+...|..+.-+.|-+-
T Consensus 671 LG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 671 LSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 99998766554334455566666666654 45667777776666553
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.28 E-value=2.1e-10 Score=135.16 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=188.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcch
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 737 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~i 737 (1866)
.++.+...+.|+++.||..|.+++..+.. +..+|.+.+.+.++++.+|..++..|+.+..... .++.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----CEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----THHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----cchHH
Confidence 46778888999999999999999988742 4578888999999999999999999998763211 12345
Q ss_pred hHHHh-hhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHH
Q 000201 738 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 815 (1866)
Q Consensus 738 v~~l~-~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~ 815 (1866)
++.+. .+++|+++.||..++++|+.++.... .....+++.|...+.|++..+| .++..+..... ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------HHHH
Confidence 66655 36789999999999999999985331 2235678999999999999998 56666654211 2367
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhH
Q 000201 816 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 895 (1866)
Q Consensus 816 p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l 895 (1866)
|.|...+++.++.+|..++..++.+.. . .+..++.+...+.|+++.||..++.+|+.+.. +..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~-------~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-------KRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------GGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------Hhh
Confidence 888899999999999999999988742 1 13577888889999999999999999988652 456
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhcc-CChhHHhHHHHHH
Q 000201 896 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 957 (1866)
Q Consensus 896 ~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~-~~~~vR~~al~~l 957 (1866)
++.|...+.++. +|..++.+|+.+. . +..+|.+.+.+.+ +++.++..++..+
T Consensus 225 ~~~L~~~l~d~~---vr~~a~~aL~~i~----~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKNT---VYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSSS---CCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcc---HHHHHHHHHHhcC----c---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 777777776533 7888888887753 2 3566777777654 4555555444443
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.26 E-value=2.6e-10 Score=134.34 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=187.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHh
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 695 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~ 695 (1866)
.++.|.+.+.+ .++..|..|+.+++.+.. ...+|.+...+.|+++.||..+.+++..+.. .+..+..
T Consensus 24 ~i~~L~~~L~~-~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDD-HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHc-CCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 35666777765 467888888888776641 3577888899999999999999999987742 2233455
Q ss_pred HHHHHHh-hcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHh
Q 000201 696 VLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 774 (1866)
Q Consensus 696 llp~L~~-~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~ 774 (1866)
+++.+.. .+++++|.+|..++.+|+.+....+.. .+.+++.+...++|+++.||..|+++|+.++. ..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~ 159 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KA 159 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HH
Confidence 6666663 467899999999999999988655422 24678888899999999999999999998764 23
Q ss_pred HHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 775 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 775 lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
.+|.|.+.+.|++..+| .++..+..... .-..++|.+...++|.++.+|..++.+++.+..
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcc-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----------
Confidence 67888899999999888 46666654211 124578899999999999999999999998752
Q ss_pred HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHH
Q 000201 854 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 919 (1866)
Q Consensus 854 ~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L 919 (1866)
+..++.|...+.|++ ||..++.+|+.+.. +..+|.|.+.+.+..+...+..++..+
T Consensus 222 -~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 -KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp -GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 236777778888754 89999999988643 367888888777655444555554443
No 59
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.15 E-value=7.4e-06 Score=106.75 Aligned_cols=262 Identities=15% Similarity=0.165 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc-ccccchHHHHhcccCCCC
Q 000201 1095 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDPS 1173 (1866)
Q Consensus 1095 ~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~-~~l~~llp~L~~~L~d~~ 1173 (1866)
..+|..|+-.||-+..++.+ .+.++ .|...+.+.+...|..|+.+||-+.-..+. .+...++..+. .+.+
T Consensus 451 ~~ir~gAaLGLGla~~GS~~--eev~e----~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~ 521 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSAN--IEVYE----ALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQH 521 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCC--HHHHH----HHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSC
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHH----HHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCc
Confidence 57888899899887655443 12333 344445566677888888899877544333 24455555544 3456
Q ss_pred ccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHHHHHHhccCCC
Q 000201 1174 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 1253 (1866)
Q Consensus 1174 ~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 1253 (1866)
..+|+.++.+|+.+. .+.. +..+.++.. ...+.++-+|..++.+++.-+-..|.. ..+..|+..+.++.
T Consensus 522 e~vrR~aalgLGll~--~g~~---e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d~ 590 (963)
T 4ady_A 522 GNITRGLAVGLALIN--YGRQ---ELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSDS 590 (963)
T ss_dssp HHHHHHHHHHHHHHT--TTCG---GGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhh--CCCh---HHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccCC
Confidence 678899999998653 2221 122333333 234788999999988887655444431 22333333322111
Q ss_pred chhHHHHHHHHHhhccccccchhhhhhhhcCCccchhHHHHHHHHHHh-CCCchhhHhhHHHHHHHhc-CCCCHHHHHHH
Q 000201 1254 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVA-GPGLNFHLGTILPALLSAM-GDDDMDVQSLA 1331 (1866)
Q Consensus 1254 ~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~~~~~~~~al~~La~~~-g~~l~~~l~~il~~L~~~l-~~~~~~vr~~a 1331 (1866)
. ...+..|+-+|+.+. |. +...+.++..+ .+.++.+|..+
T Consensus 591 ~--------------------------------d~VRraAViaLGlI~~g~------~e~v~rlv~~L~~~~d~~VR~gA 632 (963)
T 4ady_A 591 N--------------------------------DDVRRAAVIALGFVLLRD------YTTVPRIVQLLSKSHNAHVRCGT 632 (963)
T ss_dssp C--------------------------------HHHHHHHHHHHHHHTSSS------CSSHHHHTTTGGGCSCHHHHHHH
T ss_pred c--------------------------------HHHHHHHHHHHHhhccCC------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 1 011223444454432 33 13455555544 56789999999
Q ss_pred HHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCC--CChhHHHH
Q 000201 1332 KEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSD--SDSTTVAA 1409 (1866)
Q Consensus 1332 ~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d--~~~~v~~~ 1409 (1866)
..+++.+...-+ ...++..|.....|.+..+|++|+.++|.+.........+.+..+++.|.....| .+...+-.
T Consensus 633 alALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 633 AFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp HHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHH
Confidence 999998764333 2456666666678999999999999999998777666667888999998888866 45566666
Q ss_pred HHHHHHHH
Q 000201 1410 AWEALSRV 1417 (1866)
Q Consensus 1410 A~~aL~~l 1417 (1866)
+.-|.+-+
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.14 E-value=1.4e-09 Score=121.01 Aligned_cols=189 Identities=19% Similarity=0.203 Sum_probs=154.5
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
+.++-....+.++..+.|+++.||..|..++..+.. ...+|.+++.+.+++|.+|..++..|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 445556788899999999999999999999987643 3567888899999999999999999998753
Q ss_pred HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcc
Q 000201 731 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 809 (1866)
Q Consensus 731 ~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~ 809 (1866)
+..++.+...++|+++.||..|+++|+.++. + ..++.|.+.+.|++..+| .++..+....
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----E---RAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 3567888899999999999999999998863 2 466778888899998888 4666665421
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
....+|.+...+++.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+-
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 13467888999999999999999999998842 346778888888999999999999988754
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.12 E-value=1.2e-09 Score=144.03 Aligned_cols=288 Identities=16% Similarity=0.280 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc--hhhHhHHHHHHHHHHhhccCC
Q 000201 911 ERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLADE 986 (1866)
Q Consensus 911 ~R~~a~~~L~~l~~~~g~~--~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g--~~f~~~l~~il~~ll~~l~d~ 986 (1866)
.+..++..++.+...-+.. .-..++..+.+.+.+.... ++++.++..++...+ ..++||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 4566777777766533222 1125666677766665444 999999999998775 478999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCC-chHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHH
Q 000201 987 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1065 (1866)
Q Consensus 987 ~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~-~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~ 1065 (1866)
...||.+|..|...++..++..++..++|.+...+.+. .|+.+.+++.+++.+....+
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--------------------- 166 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--------------------- 166 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---------------------
Confidence 99999999999999999999999999999999988655 69999999999999864321
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 000201 1066 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1144 (1866)
Q Consensus 1066 ~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p-~~l~~~l~~l~~~L~~~l~~~~~~~R~~A~~ 1144 (1866)
++++ ..+.++++.+..+..|...+|+.+|..++..++.... ..+.+++|.+ ++++.+++. +- .+..
T Consensus 167 ------~~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~----~~~~~~p~~-~~-~~~~ 233 (986)
T 2iw3_A 167 ------DQVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL----IQCIADPTE-VP-ETVH 233 (986)
T ss_dssp ------HHHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH----HHHHHCTTH-HH-HHHH
T ss_pred ------HHHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH----HHHhcChhh-hH-HHHH
Confidence 1121 2445788888889999999999999999998886332 4455555554 455666644 11 1122
Q ss_pred HHH--HHHHHhccccccchHHHHhcccCCCCccchhhHHHHHHHHHHhh-chhhHHhhHhhHHHHHHHhhc-CCcHHHHH
Q 000201 1145 ALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALC-DSILEVRE 1220 (1866)
Q Consensus 1145 ~L~--~lv~~~~~~~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~-~~~~l~~~l~~ll~~l~~~L~-d~~~~vr~ 1220 (1866)
.|+ .++..+..+.+.-+.|.|.++|.++...+++.++..+.++..-. .|....+|++.++|.+.+... -.+|++|+
T Consensus 234 ~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 234 LLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 222 12223334567788999999999988888888888777776544 366788999999999998665 56999999
Q ss_pred HHHHHHHHHHHHhc
Q 000201 1221 SAGLAFSTLFKSAG 1234 (1866)
Q Consensus 1221 ~A~~al~~l~~~~g 1234 (1866)
.|.+|+..+.+..+
T Consensus 314 ~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 314 VTLRALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876544
No 62
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.11 E-value=4.2e-08 Score=137.90 Aligned_cols=538 Identities=12% Similarity=0.113 Sum_probs=297.0
Q ss_pred hhHHHHHhhhcCC--ChhHHHHHHhhhccCccccCCCCCcccc-ccchheeeecCCchhHHHHH--------HHHhhhcC
Q 000201 294 NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIE-VSTSLWIAVHDPEKSVAEAA--------EDIWDRYG 362 (1866)
Q Consensus 294 ~~~~~~l~~~~~~--~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~ 362 (1866)
.++.++|..+++| +..+|++|++.|+++. .++ .... +...+. ..+.+..+|..| ...|...+
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~---~~p--~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFK---EKC--PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH---HHC--TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHH---hCc--hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 4578889999998 6678999999998864 111 0111 112221 233345555433 35687755
Q ss_pred CccCCCh-hhhhhhcCC-------CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCcchhhH
Q 000201 363 YDFGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 433 (1866)
Q Consensus 363 ~~~~~~~-~~ll~~l~~-------~~~~vr~~aa~~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~ 433 (1866)
.+....+ ..+++.+.+ +...+|.+.+++++.++. .||+.|++.+..+.+.... +...+.+
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~ 152 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTEL 152 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHH
Confidence 4444455 566665542 468999999999999864 4677677777777654421 1234677
Q ss_pred HHHHHHHhhhh-cCCCChHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhhcCC---------
Q 000201 434 IALALHSAADV-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKK--------- 503 (1866)
Q Consensus 434 ~~~~l~~~~~~-~~~~~~~~~~~fli~~~l~d~~~~vr~~~~~a~~~~i~~~g~~~~~~ll~~le~~L~~~--------- 503 (1866)
...+|..+++. +..+. ... .|..-+. ..+. ++.+.+++.+...+...
T Consensus 153 ~L~iL~~L~Eev~~~~~---------------~~~-~r~~~l~---~~l~----~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQT---------------LPP-QRRRDIQ---QTLT----QNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp HHHHHHHHHHHHHTSCC---------------SCH-HHHHHHH---HHHH----HTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccccc---------------hHH-HHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77778877653 21111 111 1111110 0011 11233333333333210
Q ss_pred --CCC--hhhhhhHHHHHHHHHHHHhhhhccCC--cchHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhh--hh----
Q 000201 504 --ASD--EEKYDLVREGVVIFTGALAKHLAKDD--PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ--DE---- 571 (1866)
Q Consensus 504 --~~~--~~~~~~vr~~av~~l~~i~~~l~~~~--~~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~--~~---- 571 (1866)
... .+....++..++.++.......+... ..-..+++.+...+.+ ++++..+++||..++.... +.
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~l 287 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPL 287 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGG
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHH
Confidence 000 01123466667766654443322110 0001356666665554 4689999999888775331 11
Q ss_pred ---h-HHHHHHHHHHHH-------cCCChhHHHHHHHHHHHHHhhhCc---------chhhhcchHHHHHHHHhCCCcHH
Q 000201 572 ---A-PTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVVKGFGI---------SSLKKYGIAATLREGLADRNSAK 631 (1866)
Q Consensus 572 ---~-~~~l~~ll~~L~-------~~~~~~~R~~A~~~L~~l~~~~g~---------~~l~~~~ii~~L~~~i~~~~~~~ 631 (1866)
+ ...+..++..+. .++++..++.-+..+..+...+-. ..-....+++.+.....+. +..
T Consensus 288 i~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~-~~~ 366 (1204)
T 3a6p_A 288 MVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP-SQF 366 (1204)
T ss_dssp GGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS-CHH
T ss_pred HHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc-cHH
Confidence 1 122344555543 111234455544444443321100 0001125677777777664 334
Q ss_pred HHHHHHHHHHHHHHHh----CcCchhcHHhHHHHH---HHHcCCCC------------------------HHHHHHHHHH
Q 000201 632 RREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSDQV------------------------VAVREAAECA 680 (1866)
Q Consensus 632 ~r~~al~al~~L~~~l----~~~~~p~v~~llp~l---l~~~~D~~------------------------~~VR~~a~~a 680 (1866)
.-..++..+..+.+.. ...+.+++..+++.+ +..+.-+. ...|+...+.
T Consensus 367 vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~ 446 (1204)
T 3a6p_A 367 LRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEV 446 (1204)
T ss_dssp HHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHH
Confidence 4444454555555432 123567777888887 33332110 1467778888
Q ss_pred HHHHHHhhcHhhHHhHHHHHHhhcC-------------------------CCChhhHHHHHHHHHHHHhhChhhH-Hhhh
Q 000201 681 ARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGAMAYCAPQQL-SQCL 734 (1866)
Q Consensus 681 l~~i~~~l~~~~v~~llp~L~~~L~-------------------------~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l 734 (1866)
++.++...+...+..+.+.+.+.+. +..|....+....+.++++++.... ..++
T Consensus 447 l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l 526 (1204)
T 3a6p_A 447 MRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEI 526 (1204)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 8888877766666666665544332 2346677777778888877653222 1233
Q ss_pred c-chhHHHhhhc---cCCChHHHHHHHHHHHHHHhhccc-h-hHHhHHHHHHHhhCCCCh-hHHHHHHHHHhccccccCC
Q 000201 735 P-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPND-HTKYSLDILLQTTFVNTVD 807 (1866)
Q Consensus 735 ~-~iv~~l~~~L---~D~~~~VR~aA~~aL~~l~~~i~~-~-~i~~lv~~L~~~l~d~~~-~vr~al~~L~~~~~~~~~~ 807 (1866)
+ .+++.++..+ +..+|.+|..+..+++.++.++.. | .+..+++.++..+.++.. .. . +
T Consensus 527 ~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~-------------~--~ 591 (1204)
T 3a6p_A 527 PVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEES-------------K--A 591 (1204)
T ss_dssp CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCST-------------T--S
T ss_pred cHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccc-------------c--c
Confidence 3 2445555543 456899999999999999887752 2 334455544444433110 00 0 0
Q ss_pred cchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCC---HhHHHHHHHHHHHHH
Q 000201 808 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---PEVRSVAARAIGSLI 884 (1866)
Q Consensus 808 ~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~---~~vR~~a~~aL~~l~ 884 (1866)
. . .+.+.++|..|+.++..++..+ +..+.||++.+...+...+.... ..-+.....+++.++
T Consensus 592 ~-~------------~~~~k~vr~~a~~al~~L~~~~--~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 592 P-R------------TRAVRNVRRHACSSIIKMCRDY--PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp C-C------------CHHHHHHHHHHHHHHHHHHHHC--HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred c-c------------cHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 0 0 0013478999999999999854 35788999999999998887444 555667778888887
Q ss_pred hhcCCC-----ChhhHHHHHHHhccc
Q 000201 885 RGMGEE-----NFPDLVSWLLDALKS 905 (1866)
Q Consensus 885 ~~~g~~-----~~~~l~~~L~~~L~~ 905 (1866)
..+++. ++..+++.+.+.+.+
T Consensus 657 ~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 657 NQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 665543 355666666666654
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.10 E-value=2.3e-09 Score=120.24 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=134.2
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
...++.+...+.|+++.+|..+..++..+.. +..+|.|.+.+.+++|.+|..++..|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------H
Confidence 3567788888899999999999998887643 3567888888889999999999999987753 3
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
..++.+...++|+++.||..|+++|+.++. ...++.|.+.+.|++..+| .++..|..... ...
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~ 144 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERA 144 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHH
Confidence 567778888999999999999999988763 2355677777777777777 45555544211 235
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 887 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~ 887 (1866)
+|.|...++|.++.+|..++.+++.+.. +..++.|...+.|+++.||..|..+|+.+....
T Consensus 145 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 145 VEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 6667777777777777777777776632 235666666777777777777777777666543
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.04 E-value=8.9e-06 Score=103.90 Aligned_cols=540 Identities=12% Similarity=0.081 Sum_probs=299.6
Q ss_pred chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHH
Q 000201 615 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 694 (1866)
Q Consensus 615 ~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~ 694 (1866)
.++.-|+..+...++. +..--+.++-.+...++..|.. +.-++..+. ..-..++||..+.-++..+.+..+...-+
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELI--LRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHH--TTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhc--cccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 4555555555533443 3444556666777777766655 333333322 35678899998888777776655533323
Q ss_pred hHHHHHHhhc----CCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhc-cCCChHHHHHHHHHHHHHHhh-
Q 000201 695 LVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 766 (1866)
Q Consensus 695 ~llp~L~~~L----~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L-~D~~~~VR~aA~~aL~~l~~~- 766 (1866)
.+...+-..+ .+..-..-..++.++..+..-.|+.....+ ....+.+.+.+ ...+..+..++.+.|...+..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 2222222222 121233344455566666555555433221 24455566555 345566777777777666532
Q ss_pred -ccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 767 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 767 -i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+++-..+..++.|...+.+ +.+| .++-.|..+.........+...+.+.+.+.+.....+.|..|++.+..+...
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~- 364 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK- 364 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-
Confidence 2222236677888877765 3455 3444554432222222345667889999999887777799999988887641
Q ss_pred CCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHhccc-CCCHHHHHHHHH
Q 000201 845 TEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKS-DNSNVERSGAAQ 917 (1866)
Q Consensus 845 ~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~-----~~~~l~~~L~~~L~~-~~~~~~R~~a~~ 917 (1866)
.+.++....-+..++.|.+.+.+ .+..+...+...|..+....... .+..+.++.-..... +...... ..-.
T Consensus 365 ~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~-~~~~ 443 (778)
T 3opb_A 365 ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK-AAKE 443 (778)
T ss_dssp SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH-HHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc-cchH
Confidence 11112112224567778888874 56677777888888877754321 112222221111000 0000000 0001
Q ss_pred HHHH-HHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH-HHHHHHHHhhccCCChH---HHH
Q 000201 918 GLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENES---VRD 992 (1866)
Q Consensus 918 ~L~~-l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l-~~il~~ll~~l~d~~~~---VR~ 992 (1866)
.+.+ ....+-. ...+|.+...+.+.++.+|+.+..++..++..-... ...+ ...+++++..+....+. +|.
T Consensus 444 ~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R-~~lvqqGal~~LL~lL~s~~~~~~~~k~ 519 (778)
T 3opb_A 444 DILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI-PQLAQQGAVKIILEYLANKQDIGEPIRI 519 (778)
T ss_dssp HHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH-HHHHHTTHHHHHHHHTTCC---CCHHHH
T ss_pred HHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcCCCcchHHHH
Confidence 1111 1111111 247788889999999999999999999998653221 1122 35778888888765443 899
Q ss_pred HHHHHHHHHHHhhc------ccchhchHHhHhcccCC-Cch-------------HHHHHHHHHHHHHHHHhcCCcccccc
Q 000201 993 AALGAGHVLVEHYA------TTSLPLLLPAVEDGIFN-DNW-------------RIRQSSVELLGDLLFKVAGTSGKALL 1052 (1866)
Q Consensus 993 ~a~~al~~i~~~~~------~~~i~~llp~l~~~l~d-~~w-------------~vR~~s~~ll~~ll~~~~~~~~~~~~ 1052 (1866)
.|..|+..+.-... .......+|.+.+.+.. +.- .-+..++..+..+...
T Consensus 520 ~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~---------- 589 (778)
T 3opb_A 520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS---------- 589 (778)
T ss_dssp HHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----------
Confidence 99999988764221 11111244555554431 110 1255666666665411
Q ss_pred cCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhH-HHhH----HH---HH
Q 000201 1053 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL-KEIM----PV---LM 1124 (1866)
Q Consensus 1053 ~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l-~~~l----~~---l~ 1124 (1866)
++. ..+...+.++.. ...++.|...+.+.+..+|++|+.++..++.+ |... ..++ |. -+
T Consensus 590 ---~~n---~~E~~r~~Ii~~------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL 656 (778)
T 3opb_A 590 ---ETS---DGEEVCKHIVST------KVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNF 656 (778)
T ss_dssp ---CSH---HHHHHHHHHHHS------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHH
T ss_pred ---Ccc---cchHHHHHHHHh------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccH
Confidence 000 001111222221 12455555566777889999999999999974 4322 2332 22 26
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhcc---ccc--cchHHHHhcccCC--CCccchhhHHHHHHHHHH
Q 000201 1125 NTLISSLASSSSERRQVAGRALGELVRKLGE---RVL--PSIIPILSRGLKD--PSASRRQGVCIGLSEVMA 1189 (1866)
Q Consensus 1125 ~~L~~~l~~~~~~~R~~A~~~L~~lv~~~~~---~~l--~~llp~L~~~L~d--~~~~vr~~a~~~L~~li~ 1189 (1866)
+.++..+.+.+.++|.+|..+|+.+....+. .++ +..++.+...+.+ ++.++|+.++.++..+..
T Consensus 657 ~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 657 NILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6788888899999999999999988643322 111 2355566666666 788899999999988875
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.97 E-value=2.6e-08 Score=125.53 Aligned_cols=338 Identities=14% Similarity=0.112 Sum_probs=222.7
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhc-cch-hH-
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNP-EI- 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i-~~~-~i- 772 (1866)
+|.++..|.++++.++..|+..|..++...+..- .-.-...+|.|+++|++.++.++..|+++|..++..- .+. .+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778888888888999999999999886544311 1122478999999999999999999999999998631 111 12
Q ss_pred -HhHHHHHHHhhC-CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh--------cC--------CCHHHHHHH
Q 000201 773 -ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL--------RE--------RSAETKKKA 833 (1866)
Q Consensus 773 -~~lv~~L~~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l--------~d--------~~~~vr~~a 833 (1866)
...+|.|.+.+. +++..++ .+...|......+..........+|.|.+.+ .+ .+.++.+.|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 356899999998 6676666 4656665533322211122336788888888 22 245667799
Q ss_pred HHHHHHHhhhcCCCcchhhhH--hhhhHHHHHHhcC------CCHhHHHHHHHHHHHHHhhc------------------
Q 000201 834 AQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVD------PIPEVRSVAARAIGSLIRGM------------------ 887 (1866)
Q Consensus 834 ~~~l~~l~~~l~~~~~l~~~~--~~ll~~L~~~l~d------~~~~vR~~a~~aL~~l~~~~------------------ 887 (1866)
+.++.+++.. +....... +..++.|..++.+ ++..+.+.++.++..++...
T Consensus 164 ~~aL~nLs~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 164 TGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHccC---HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 9999999873 22211122 2466666666653 34455555555555543100
Q ss_pred ----------------------------------CCC--ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh--
Q 000201 888 ----------------------------------GEE--NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-- 929 (1866)
Q Consensus 888 ----------------------------------g~~--~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~-- 929 (1866)
|.+ .....++.+...+.+.++...+..++.+|+.++.+-+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000 113467777777776666678888899999987654331
Q ss_pred -----HH--HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH-HHHHHHHHHhhccCCCh------HHHHHHH
Q 000201 930 -----YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY-LQQVLPAILDGLADENE------SVRDAAL 995 (1866)
Q Consensus 930 -----~l--~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~-l~~il~~ll~~l~d~~~------~VR~~a~ 995 (1866)
.+ ...+|.+++.+.+++..++..++.++..++..- +.... -...+|+++..+...++ ++...++
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l 398 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence 12 356799999999999999999999999998743 22222 25688999999886543 5666777
Q ss_pred HHHHHHHHhhccc--chh--chHHhHhcccCCC-chHHHHHHHHHHHHH
Q 000201 996 GAGHVLVEHYATT--SLP--LLLPAVEDGIFND-NWRIRQSSVELLGDL 1039 (1866)
Q Consensus 996 ~al~~i~~~~~~~--~i~--~llp~l~~~l~d~-~w~vR~~s~~ll~~l 1039 (1866)
.++..++..-... .+. ..+|.+.+.+.+. +.+++..+..++..+
T Consensus 399 ~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 7777766432211 111 2567777777777 788888888877665
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.97 E-value=7.9e-09 Score=119.52 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=166.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhH-----HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v-----~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
++.+...+.++++.+|..|.+++..++.. ..... ...+|.+++.|.++++.+|..++.+|+.++...++.....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55666677888999999999999776665 22221 3578999999999999999999999999998665443222
Q ss_pred h-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccch--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC-
Q 000201 734 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 806 (1866)
Q Consensus 734 l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~- 806 (1866)
. ...+|.++.+++++++.||..|+++|+.++..-.+. .+ ...+|.|.+.+.+++..++ .++..+.........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 1 368899999999999999999999999998643322 11 4589999999999888777 466666553221100
Q ss_pred -CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 807 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 807 -~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
..-.-..++|.+.+.+.+.++.+|..++.++++++. ..+.....+. ...++.+..++.++++.+|..|..+|+.++
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 001124578999999999999999999999999985 2322222222 247888889999999999999999988765
No 67
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.97 E-value=1.6e-08 Score=113.36 Aligned_cols=183 Identities=21% Similarity=0.210 Sum_probs=109.2
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
+..++.+++.|.+++|.+|..++..|+.+.. +..++.+.+.+.|+++.||..|+++|+.++. .
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~ 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 80 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------G
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4567778888888888888888888887643 3567778888888888899888888888753 2
Q ss_pred hHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 774 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
..++.|.+.+.|++..+| .++..|..... ...+|.|...+++.++.+|..++.+++.+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 345566666666666655 34444433110 1234555555666666666666666655532
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 922 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l 922 (1866)
+..++.|...+.|+++.||..++.+|+.+.. +..++.|...+.++ +..+|..+..+|+.+
T Consensus 142 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-TGFARKVAVNYLETH 201 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhc
Confidence 1234555555566666666666666655421 33444444444332 233555555555443
No 68
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.96 E-value=3.4e-08 Score=114.10 Aligned_cols=231 Identities=19% Similarity=0.129 Sum_probs=174.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
.+|.+...+.++++.+|..|.+++..++..-+.. .+ ...+|.+++.|.++++.+|..++.+|+.++...++.....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4678888999999999999999999998754421 11 3589999999999999999999999999998754432211
Q ss_pred -hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC-
Q 000201 734 -LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV- 806 (1866)
Q Consensus 734 -l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~- 806 (1866)
-...+|.+..+++++++.||..|+++|..++..-.+ ..+ ...+|.+.+.+.+++..++ .++..+.........
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 136789999999999999999999999999853211 111 3579999999999888777 466666553221110
Q ss_pred -CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh-HhhhhHHHHHHhcCCCHhHHHHHHHHHHHHH
Q 000201 807 -DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 884 (1866)
Q Consensus 807 -~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~ 884 (1866)
..-.-...+|.+...+.+.++++|..++.++++++. ..+...... -...++.+..++.++++.+|..|..+|+.+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 011123578999999999999999999999999986 222111111 2357899999999999999999999999999
Q ss_pred hhcCCC
Q 000201 885 RGMGEE 890 (1866)
Q Consensus 885 ~~~g~~ 890 (1866)
...+..
T Consensus 241 ~~~~~~ 246 (252)
T 4hxt_A 241 SGGWLE 246 (252)
T ss_dssp HTCBCC
T ss_pred cCCCcc
Confidence 866544
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.2e-06 Score=109.38 Aligned_cols=478 Identities=11% Similarity=0.086 Sum_probs=291.0
Q ss_pred CCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHH----cCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHH
Q 000201 548 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM----KSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATL 620 (1866)
Q Consensus 548 ~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~----~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L 620 (1866)
...++++..+.-.+..+...+.+.+.+.+..+++.+. .+.....-..+...++.+....+ ...+-..+..+.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l 260 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLF 260 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHH
Confidence 3456788888777777776666667777777777555 22122344555556655554332 1122223566777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc-HHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH--hhHHhHH
Q 000201 621 REGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLVL 697 (1866)
Q Consensus 621 ~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~-v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~--~~v~~ll 697 (1866)
.+.+...++.....+++..+...|.. +....+ ....+|.|...+++ ..+|..|+-+|..+...-.. ..+..+.
T Consensus 261 ~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 261 KKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 77665555555555555555444432 112333 34677888887765 47788777777776553322 2357788
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHhhCh--hhHHhhhcchhHHHhhhccC-CChHHHHHHHHHHHHHHhhccc-----
Q 000201 698 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN----- 769 (1866)
Q Consensus 698 p~L~~~L~~~~w~~r~~a~~~L~~l~~~~~--~~~~~~l~~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~~----- 769 (1866)
+.+.+.|.+++-..|.-|++.|+.+.-... +.+.. -+..++.|+.++++ .+..+...+...|.++.....+
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~-d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRS-NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHH-CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHh-CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 999999988776779999999998876532 22322 24667778888875 5677888888888888875442
Q ss_pred hhHHhHHHHHHHhhC--CCChh-HH--HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Q 000201 770 PEIASLVPTLLMGLT--DPNDH-TK--YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 844 (1866)
Q Consensus 770 ~~i~~lv~~L~~~l~--d~~~~-vr--~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l 844 (1866)
+.+.++-+....... .+++. .. +.+.... ...+ .-..++|.|...+.+.++.+|..++.++.+++..
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~-~~~l------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d- 487 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN-EKYI------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRS- 487 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHH-HHHT------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHH-HHHH------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence 122222111111000 01111 00 0000000 0000 1134789999999999999999999999999862
Q ss_pred CCCcchhhhH-hhhhHHHHHHhcCCCHh---HHHHHHHHHHHHHhhcCCC------ChhhHHHHHHHhccc--CCC----
Q 000201 845 TEPKDMIPYI-GLLLPEVKKVLVDPIPE---VRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKS--DNS---- 908 (1866)
Q Consensus 845 ~~~~~l~~~~-~~ll~~L~~~l~d~~~~---vR~~a~~aL~~l~~~~g~~------~~~~l~~~L~~~L~~--~~~---- 908 (1866)
++...... ...++.|..++.+.... +|..|+.+|..+.....+. .....+|.|++.|.. ...
T Consensus 488 --~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l 565 (778)
T 3opb_A 488 --KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565 (778)
T ss_dssp --GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred --HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence 22222222 34677888888776544 8999999999998644321 112688899988872 111
Q ss_pred -------HHHHHHHHHHHHHHHHHhC---hh----HHH--HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhc---hhhH
Q 000201 909 -------NVERSGAAQGLSEVLAALG---TV----YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQ 969 (1866)
Q Consensus 909 -------~~~R~~a~~~L~~l~~~~g---~~----~l~--~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g---~~f~ 969 (1866)
...+..++.+|..++..-+ .+ .+. ..+|.+...+.+++..+|.+++.++..|+..-. ..|.
T Consensus 566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~ 645 (778)
T 3opb_A 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFF 645 (778)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTS
T ss_pred cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 1236678888888877542 11 333 478889999999999999999999999996443 2331
Q ss_pred hHH-H---HHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcc---cchh--chHHhHhcccCC--CchHHHHHHHHHHHH
Q 000201 970 NYL-Q---QVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP--LLLPAVEDGIFN--DNWRIRQSSVELLGD 1038 (1866)
Q Consensus 970 ~~l-~---~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~---~~i~--~llp~l~~~l~d--~~w~vR~~s~~ll~~ 1038 (1866)
..- + +-++.++..+..+++++|.+|..++..+....+. ..+. ..++.+.+.+.+ ++..+|..++.++..
T Consensus 646 ~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 646 NLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFG 725 (778)
T ss_dssp CCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 111 1 1377888999889999999999888877532221 1111 133344444444 567788888888887
Q ss_pred HH
Q 000201 1039 LL 1040 (1866)
Q Consensus 1039 ll 1040 (1866)
+.
T Consensus 726 L~ 727 (778)
T 3opb_A 726 LF 727 (778)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.94 E-value=3e-08 Score=110.09 Aligned_cols=182 Identities=21% Similarity=0.213 Sum_probs=131.6
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHH
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 773 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~ 773 (1866)
....+.+++.|.+++|.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+++|+.++. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----~--- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----E--- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G---
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----H---
Confidence 5678889999999999999999999987653 3567788888999999999999999988753 2
Q ss_pred hHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh
Q 000201 774 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 852 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~ 852 (1866)
..++.|.+.+.|++..+| .++..|..... ...+|.+...+.+.++.+|..++.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 456777778888887777 46666554211 2356777777788888888888888877642
Q ss_pred hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 000201 853 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 921 (1866)
Q Consensus 853 ~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~ 921 (1866)
+..++.|...+.|+++.||..|+.+|+.+.. +..++.|...+.+. +..+|..+..+|+.
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETG-TGFARKVAVNYLET 195 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2356667777788888888888888877621 34555565555443 34567777666654
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.94 E-value=1.4e-07 Score=118.93 Aligned_cols=342 Identities=13% Similarity=0.088 Sum_probs=212.0
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH-HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhh--ccch-hH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP-EI 772 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~--i~~~-~i 772 (1866)
+|.+++.|.+.+..++..|+..|..++....+.- .-.-...+|.|+.+|...++.|+..|+++|..++.. -.+. .+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4445555555555555555555555554332211 011126789999999999999999999999999863 1121 22
Q ss_pred --HhHHHHHHHhhCC-CChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh------------------cCCCHHHH
Q 000201 773 --ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAETK 830 (1866)
Q Consensus 773 --~~lv~~L~~~l~d-~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l------------------~d~~~~vr 830 (1866)
...+|.|++.+.. ++..++ .+...|......+.........-+|.|.+.+ ...+.+++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 4578889888875 444554 3444444432222211122233466666644 11246999
Q ss_pred HHHHHHHHHHhhhcCC-CcchhhhHhhhhHHHHHHhc------CCCHhHHHHHHHHHHHHHhhcC---------------
Q 000201 831 KKAAQIVGNMCSLVTE-PKDMIPYIGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMG--------------- 888 (1866)
Q Consensus 831 ~~a~~~l~~l~~~l~~-~~~l~~~~~~ll~~L~~~l~------d~~~~vR~~a~~aL~~l~~~~g--------------- 888 (1866)
..|+.+|.+++..-.+ ...+.. .+.+++.|..++. +++....+.++.+|..|.....
T Consensus 210 ~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~ 288 (584)
T 3l6x_A 210 TNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288 (584)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence 9999999999862111 011111 1234444555443 3456677788888877775421
Q ss_pred ---------CC-----ChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh------HH--HHHHHHHHHHhccCC
Q 000201 889 ---------EE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNCSHQR 946 (1866)
Q Consensus 889 ---------~~-----~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~------~l--~~ll~~l~~~l~~~~ 946 (1866)
.. .-+..++.++..+.......++..++.+|..++.+-+.. .+ ...+|.+++.+.+++
T Consensus 289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 00 112456777777865555668888999999887643221 11 356899999999999
Q ss_pred hhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCC--------ChHHHHHHHHHHHHHHHhhccc--c-hh-chH
Q 000201 947 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYATT--S-LP-LLL 1014 (1866)
Q Consensus 947 ~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~--------~~~VR~~a~~al~~i~~~~~~~--~-i~-~ll 1014 (1866)
..+++.+..++.+|+...... ...-...+|.++..|.+. .+++...++.++..++..-... . ++ -.+
T Consensus 369 ~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I 447 (584)
T 3l6x_A 369 ERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447 (584)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh
Confidence 999999999999999865432 223456889999998765 3577888888887766421111 1 11 156
Q ss_pred HhHhcccCCC--chHHHHHHHHHHHHHH
Q 000201 1015 PAVEDGIFND--NWRIRQSSVELLGDLL 1040 (1866)
Q Consensus 1015 p~l~~~l~d~--~w~vR~~s~~ll~~ll 1040 (1866)
|.+...+.+. ..+++..+..++..+.
T Consensus 448 ~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 448 EKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6676666654 6678888888887775
No 72
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.90 E-value=3e-07 Score=116.09 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=226.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhh---h--HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhh---Cc
Q 000201 537 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE---A--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GI 608 (1866)
Q Consensus 537 ~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~---~--~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~---g~ 608 (1866)
.-++.++..|.++++++|..++.++..+.....+. . ..-++.|+.. +.+++..++..|+.+|..++.+. ..
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46788899999999999999888887665432211 1 1245555544 46677899999999999999741 22
Q ss_pred chhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHc------------------CCCC
Q 000201 609 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQV 670 (1866)
Q Consensus 609 ~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~------------------~D~~ 670 (1866)
..+...+.++.|.+.+.+..+...++.+..++..|+.... .-...+...+|.|...+ ..++
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 3344557889999988865566677778888888875221 11112344566666544 1235
Q ss_pred HHHHHHHHHHHHHHHHhhcH--hhH---HhHHHHHHhhcC------CCChhhHHHHHHHHHHHHhhChhhHH--------
Q 000201 671 VAVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCAPQQLS-------- 731 (1866)
Q Consensus 671 ~~VR~~a~~al~~i~~~l~~--~~v---~~llp~L~~~L~------~~~w~~r~~a~~~L~~l~~~~~~~~~-------- 731 (1866)
..|+..|..+|..++..-.. ..+ ..+++.|+..+. +.+.+....|+.+|.+++++......
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 79999999999999753221 111 235566666654 24567788899999988876321110
Q ss_pred ----------------h--hhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc--ch----hH--HhHHHHHHHhhC
Q 000201 732 ----------------Q--CLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK--NP----EI--ASLVPTLLMGLT 784 (1866)
Q Consensus 732 ----------------~--~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~--~~----~i--~~lv~~L~~~l~ 784 (1866)
. .-+..++.++.++. ..++.++++|+++|..++..-. .. .+ ...+|.|.+++.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 0 11345677888885 4579999999999999974211 01 22 356999999999
Q ss_pred CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHhhhcCCCcchhhh-H
Q 000201 785 DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPY-I 854 (1866)
Q Consensus 785 d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~--------~~~vr~~a~~~l~~l~~~l~~~~~l~~~-~ 854 (1866)
.++..++ .+...|.............-...+|.|.+.|.+. +.++...++.++++++. +++...... -
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~ 443 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRE 443 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHH
Confidence 9888776 4555554433322222233456789999888764 46888899999999975 232222211 2
Q ss_pred hhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHh
Q 000201 855 GLLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~ 885 (1866)
...+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 24677788888765 77888888888887764
No 73
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.89 E-value=2.9e-06 Score=114.18 Aligned_cols=412 Identities=15% Similarity=0.105 Sum_probs=217.0
Q ss_pred cHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccccccchHHHHhc-
Q 000201 1094 SLSVRQAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGELVRKLGERVLPSIIPILSR- 1167 (1866)
Q Consensus 1094 ~~~vR~~A~~~l~~l~~~~p----~~l~~~l~~l~~~L~~~l~-~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~- 1167 (1866)
+..-..+|++++..+..+.. ........-+.+.+.+.+. +-+++....-..|+.-+....++.-.+.++..+..
T Consensus 521 dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~ 600 (997)
T 1vsy_5 521 DKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINA 600 (997)
T ss_dssp CHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHh
Confidence 33344555555555554321 2233344455555656666 45666666666677777766666667777776632
Q ss_pred -c-c--CCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHhhHHH
Q 000201 1168 -G-L--KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 1243 (1866)
Q Consensus 1168 -~-L--~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~~ilp 1243 (1866)
. + .+...-.....+..|..++...+-. ... ...++..+. +..+...||++....+..+....-...... +.
T Consensus 601 ~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~-~~ 675 (997)
T 1vsy_5 601 DGMFDRESDAATHQTSKIYMLRSILMSMEFR-APD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISD-PT 675 (997)
T ss_dssp CCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-SCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSC-HH
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHhccc-ccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCC-HH
Confidence 1 1 1112222222233333333333311 111 344444444 777889999998888887765431111111 12
Q ss_pred HHHHhccCC---------CchhHHHHHHHHHhhccccccchhhhhhhhcCC-ccch----hHHHHHHHHHHhCCC----c
Q 000201 1244 TLLHALEDD---------QTSDTALDGLKQILSVRTTAVLPHILPKLVHLP-LSAF----NAHALGALAEVAGPG----L 1305 (1866)
Q Consensus 1244 ~Ll~~L~~~---------~~~~~al~~l~~il~~~~~~ilp~Lip~L~~~~-~~~~----~~~al~~La~~~g~~----l 1305 (1866)
.+++.-.+. .........+..++..-.. .-... ....... .... ....+..+...++.. +
T Consensus 676 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~-~~~~~-~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 676 TLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKN-LEDSV-VGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTG-GGGTT-SSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHHHhhccccccccCccccCcchHHHHHHHHHHHHHH-hhhcc-cccCccccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 222221111 0011112222222110000 00000 0000000 0011 122344555555554 6
Q ss_pred hhhHhh-HHHHHHHhcCCCCH-HHHHH-HHHHHhHhhhc-cchhcHHHHHHHHHhccC-CCchhHHHHHHHHHHHHH-hh
Q 000201 1306 NFHLGT-ILPALLSAMGDDDM-DVQSL-AKEAAETVTLV-IDEEGVESLVSELLKGVG-DNQASIRRSSAYLIGYFY-KN 1379 (1866)
Q Consensus 1306 ~~~l~~-il~~L~~~l~~~~~-~vr~~-a~~~l~~l~~~-~~~~~~~~ll~~L~~~l~-~~~~~vR~~a~~~l~~l~-~~ 1379 (1866)
.++++. ++|.++.....++. ++... +..++..+... +..+.++.++..+....+ +.+| .|.+++..+..+. .+
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 677777 77777766655543 45444 44455555332 245667888888877666 5789 9999999988774 33
Q ss_pred ccchhhhhHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcC-CcchhhhhHHHHHHHHhhhhhhhhhhhcCCccccCC
Q 000201 1380 SKLYLVDEAPNMISTLIVLLSDSD-STTVAAAWEALSRVVASV-PKEVQPSYIKVIRDAISTSRDKERRKKKGGPILIPG 1457 (1866)
Q Consensus 1380 ~~~~~~~~~~~il~~L~~ll~d~~-~~v~~~A~~aL~~l~~~~-~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~l~g 1457 (1866)
.-.--......++..++.+|.|+. .+||+.|..+|+.+++.. +......++..+++....
T Consensus 833 ~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~------------------ 894 (997)
T 1vsy_5 833 LLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV------------------ 894 (997)
T ss_dssp TTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT------------------
T ss_pred HHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh------------------
Confidence 322112233577888888999999 999999999999999876 533333333322221100
Q ss_pred cCCCCCccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhh-hhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000201 1458 FCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQS-LKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSII 1536 (1866)
Q Consensus 1458 ~~~~~~l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~-l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L 1536 (1866)
.+.... ++- .. ..+...|..+..+|+.++...|-.. ..++++.++..|.+...+ +..++..+=.+++++
T Consensus 895 ---~~~~~~-~~~---~~-~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlseF 964 (997)
T 1vsy_5 895 ---NKYTSK-ERQ---KL-SKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISEF 964 (997)
T ss_dssp ---TSSCHH-HHH---HH-HHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHHH
T ss_pred ---cccccc-ccc---cc-chHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHHH
Confidence 000000 110 00 0111467889999999999884332 267888887777666665 445888888888887
Q ss_pred HHhcC
Q 000201 1537 IRKGG 1541 (1866)
Q Consensus 1537 ~~~~~ 1541 (1866)
-+.-.
T Consensus 965 krTH~ 969 (997)
T 1vsy_5 965 KKVRA 969 (997)
T ss_dssp HHHTS
T ss_pred Hhccc
Confidence 65443
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.88 E-value=2.5e-07 Score=116.59 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=222.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH--HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 692 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v--~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~ 692 (1866)
+|.+.+.+.+. ++..+..|..++..++..-.. ....+ ...+|.+..++.++++.++..|.+++..++..-+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666666654 456788888888888742221 12122 257999999999999999999999999998742221 1
Q ss_pred H--HhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhc--------cC--------CChHHH
Q 000201 693 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TD--------THPKVQ 753 (1866)
Q Consensus 693 v--~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L--------~D--------~~~~VR 753 (1866)
+ ...+|.|++.|. +.+..++..++.+|++++.+..... ......+|.|+.++ .+ .++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 1 346899999998 7889999999999999998732111 11227788888888 22 245677
Q ss_pred HHHHHHHHHHHhhccc-hhH---HhHHHHHHHhhCC------CChh-HHHHHHHHHhcccc-------------------
Q 000201 754 SAGQTALQQVGSVIKN-PEI---ASLVPTLLMGLTD------PNDH-TKYSLDILLQTTFV------------------- 803 (1866)
Q Consensus 754 ~aA~~aL~~l~~~i~~-~~i---~~lv~~L~~~l~d------~~~~-vr~al~~L~~~~~~------------------- 803 (1866)
..|+++|..++..-.+ ..+ ...+|.|...+.+ ++.. +..|+..+....+.
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 7999999999875111 122 1677777777653 3322 33344333221110
Q ss_pred ---------------------------------ccCCcchhhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHhhhcCCC-c
Q 000201 804 ---------------------------------NTVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEP-K 848 (1866)
Q Consensus 804 ---------------------------------~~~~~~~l~~l~p~L~~~l~d-~~~~vr~~a~~~l~~l~~~l~~~-~ 848 (1866)
+....-....++|.+...+.+ .+++++..|+.++++++..-... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 000000123456667777654 46899999999999998621110 0
Q ss_pred ch-hhhH--hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHhcccCCC-----HHHHHHHHHH
Q 000201 849 DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGAAQG 918 (1866)
Q Consensus 849 ~l-~~~~--~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~--~~~~l~~~L~~~L~~~~~-----~~~R~~a~~~ 918 (1866)
.+ .... ...+|.|.+++.+++.+++..|+.+|..++..-.-. .-...+|.|.+.|..... ..+...++.+
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHH
Confidence 11 1112 357899999999999999999999999998732111 123578888888876432 2344566677
Q ss_pred HHHHHHHhChh--HH--HHHHHHHHHHhccC-ChhHHhHHHHHHHHhhh
Q 000201 919 LSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPR 962 (1866)
Q Consensus 919 L~~l~~~~g~~--~l--~~ll~~l~~~l~~~-~~~vR~~al~~l~~L~~ 962 (1866)
|+.++..-... .+ ...++.+.+.+.+. +..+++.+..++..+..
T Consensus 401 l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 77776533322 11 35678888888888 88999988888876653
No 75
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.88 E-value=6.2e-08 Score=111.87 Aligned_cols=227 Identities=18% Similarity=0.125 Sum_probs=168.3
Q ss_pred hHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h
Q 000201 616 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 692 (1866)
Q Consensus 616 ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~ 692 (1866)
.++.|.+.+.+.+ +..|..|+.++..++...+......+ ..++|.+...+.+++..+|..+.+++..++..-+.. .
T Consensus 3 ~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3566777776654 77888899988888865432222222 258999999999999999999999999997642221 1
Q ss_pred H--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 693 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 693 v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+ ...+|.++..+.++++.+|..++.+|+.++...+...... -...+|.+++++.+.++.||..|+++|+.++..-.+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 1 3579999999999999999999999999997655432211 136889999999999999999999999999864221
Q ss_pred h--hH--HhHHHHHHHhhCCCChhHH-HHHHHHHhccccccC--CcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 770 P--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTV--DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 770 ~--~i--~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~--~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
. .+ ...+|.|.+.+.++++.++ .++..+......... ..-.-..++|.+.+.+++.++++|..|+.++++++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1 11 4589999999999888877 466666553221100 000123478999999999999999999999999998
Q ss_pred h
Q 000201 843 L 843 (1866)
Q Consensus 843 ~ 843 (1866)
.
T Consensus 242 ~ 242 (252)
T 4hxt_A 242 G 242 (252)
T ss_dssp T
T ss_pred C
Confidence 4
No 76
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.87 E-value=3.8e-08 Score=115.47 Aligned_cols=252 Identities=15% Similarity=0.197 Sum_probs=171.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhc
Q 000201 575 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 654 (1866)
Q Consensus 575 ~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~ 654 (1866)
..+.++..|+ ++.|.+|.||+-+|..+++..|....+. +..+ +..|+..+..++ + +.|..|
T Consensus 175 fcE~L~~DLF-dp~WEiRHGAALGLREILR~hG~GAGR~------------~~~N---~DLAvRLLCVLA--L-DRFGDY 235 (800)
T 3oc3_A 175 FFEQISDNLL-SYEWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVD---SKLFSKIYEILV--T-DKFNDF 235 (800)
T ss_dssp TTHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCC----CC------------CCCC---TTHHHHHHHHHH--H-BCCBBC
T ss_pred HHHHHHHHhc-CcchhhhhHHHHHHHHHHHHhccCCcee------------cccc---HHHHHHHHHHHH--h-cccccc
Confidence 5555666676 5679999999999999999876433221 1111 134444444444 2 235555
Q ss_pred HHhHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 655 VIQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 655 v~~llp~ll~~~~D-~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
+ +| ....||++++++++.+ ..+++. -.++-.++..+..+.|.+|++++..|..+ .++...
T Consensus 236 V-----------SDqVVAPVRETaAQtLGaL-~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~ 296 (800)
T 3oc3_A 236 V-----------DDRTVAPVRDAAAYLLSRI-YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED 296 (800)
T ss_dssp S-----------SSSCBCHHHHHHHHHHHHH-TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC
T ss_pred c-----------cCeeeeehHHHHHHHHHHH-HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH
Confidence 4 33 2467999999999999 888876 35666666777888999999999999988 222223
Q ss_pred hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC---hhHHHHHHHHHh-ccccccCCcc
Q 000201 734 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQ-TTFVNTVDAP 809 (1866)
Q Consensus 734 l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~---~~vr~al~~L~~-~~~~~~~~~~ 809 (1866)
++.+++.++..|+|.+.+||..|+.+|..++ ....+..++..+++.+.+-+ ..+...++.|.. ..+.. ...
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccc
Confidence 7899999999999999999999999999988 44568888999988886543 233333444433 11111 111
Q ss_pred hhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHH-HHHHhcCCCHhHHHHHHHHHH
Q 000201 810 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE-VKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 810 ~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~-L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
..+.++|.+...+...-..||..+.+++..+.. ..++.. +...+-.++.+++..+.+...
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~------------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE------------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC------------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 123788888888899999999998877766541 112222 334566788888888877764
No 77
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.87 E-value=3.3e-09 Score=140.23 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=66.7
Q ss_pred chHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchhhHh
Q 000201 1160 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAID 1239 (1866)
Q Consensus 1160 ~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~~~~ 1239 (1866)
.++|.+.. |++++++.|..||.+|++++.......+.-+.+.+.+.+...+.|++.+||.+|+.+|..++...|++..+
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 56776654 78899999999999999987532222222222344456778899999999999999999998887776554
Q ss_pred h-----HHHHHHHhcc
Q 000201 1240 E-----IVPTLLHALE 1250 (1866)
Q Consensus 1240 ~-----ilp~Ll~~L~ 1250 (1866)
. ++|.|+..++
T Consensus 114 ~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHTTHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 4 6777776654
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.82 E-value=4.1e-08 Score=113.41 Aligned_cols=226 Identities=18% Similarity=0.186 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhh-----HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC--cch
Q 000201 538 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISS 610 (1866)
Q Consensus 538 l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~-----~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~ 610 (1866)
.++.++..|.+++++++..++.++..++....+.. ...++.++..| .+++..+|..|+.+|..+..+.. ...
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46777778888888899999998865544322111 12344455444 55668899999999999987421 122
Q ss_pred hhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc
Q 000201 611 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 689 (1866)
Q Consensus 611 l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~ 689 (1866)
+...+.++.|.+.+.+. ++..|+.|+.+++.++..........+ ...+|.+...+.+++..||..+.+++..++..-+
T Consensus 92 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 22346889999988874 578899999999998765332111122 2588999999999999999999999999976432
Q ss_pred Hhh---H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHH
Q 000201 690 AQG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 690 ~~~---v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~ 764 (1866)
... + ..++|.+++.+.++++.+|..++.+|+.++...+....... ..+++.+..++.+.+++||..|+++|..++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 211 1 45789999999999999999999999999977665432222 368899999999999999999999999876
Q ss_pred h
Q 000201 765 S 765 (1866)
Q Consensus 765 ~ 765 (1866)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.78 E-value=4.1e-07 Score=112.32 Aligned_cols=310 Identities=11% Similarity=0.049 Sum_probs=201.6
Q ss_pred HhHHHHHHhhcCCC------------ChhhHHHHHHHHHHHHhhChhhHHh--------hh---cchhHHHhhhccCCC-
Q 000201 694 KLVLPSLLKGLEDK------------AWRTKQSSVQLLGAMAYCAPQQLSQ--------CL---PKIVPKLTEVLTDTH- 749 (1866)
Q Consensus 694 ~~llp~L~~~L~~~------------~w~~r~~a~~~L~~l~~~~~~~~~~--------~l---~~iv~~l~~~L~D~~- 749 (1866)
...+|.|++.|... +...|..|+++|.+++.+.|++... .| ....+.+++++....
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 45788888888653 2689999999999999988765322 11 122244444444321
Q ss_pred -h-----HHHH-------HHHHHHHHHHhhccch-hH--HhHHHHHHHhhC----------C-CChhHH-HHHHHHHhcc
Q 000201 750 -P-----KVQS-------AGQTALQQVGSVIKNP-EI--ASLVPTLLMGLT----------D-PNDHTK-YSLDILLQTT 801 (1866)
Q Consensus 750 -~-----~VR~-------aA~~aL~~l~~~i~~~-~i--~~lv~~L~~~l~----------d-~~~~vr-~al~~L~~~~ 801 (1866)
. .|+. .|+++|+.++..-.+. .+ ...++.|...+. + ++..++ .+...|....
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1665 8888898886532221 12 346677776663 1 112233 4555555533
Q ss_pred ccccCCcch---hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH-hhhhHHHHHH-hcCCCHhHHHHH
Q 000201 802 FVNTVDAPS---LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKV-LVDPIPEVRSVA 876 (1866)
Q Consensus 802 ~~~~~~~~~---l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~-~~ll~~L~~~-l~d~~~~vR~~a 876 (1866)
+........ ....+|.|.+.+.+.+.+++..|+.++.+++.. .+........ ...+|.|.++ +.+.++.++..+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 322111111 234689999999999999999999999999752 1111111111 2467788886 456788999999
Q ss_pred HHHHHHHHhhcCC---CC--hhhHHHHHHHhcccCCCH---HHHHHHHHHHHHHHHH--hChhHH-----HHHHHHHHHH
Q 000201 877 ARAIGSLIRGMGE---EN--FPDLVSWLLDALKSDNSN---VERSGAAQGLSEVLAA--LGTVYF-----EHILPDIIRN 941 (1866)
Q Consensus 877 ~~aL~~l~~~~g~---~~--~~~l~~~L~~~L~~~~~~---~~R~~a~~~L~~l~~~--~g~~~l-----~~ll~~l~~~ 941 (1866)
+.+|..++....+ .. ....+|.|.+.+.+..+. .++..++..|..++.. .+.+.. ...+|.+++.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 9999999873211 11 246788888888765432 3677788888877752 222211 3468899999
Q ss_pred hccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 000201 942 CSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHY 1005 (1866)
Q Consensus 942 l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~ 1005 (1866)
+.+.+..+++.+..++..++...... ..++ ...+|++...+...++.+++.|..++..+...-
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998533322 2333 357899999999999999999999999887653
No 80
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.78 E-value=4e-07 Score=112.43 Aligned_cols=317 Identities=12% Similarity=0.020 Sum_probs=201.9
Q ss_pred hcchHHHHHHHHhCCC-----------cHHHHHHHHHHHHHHHHHhCcCchhcHH-hH----------HHHHHHHcCCCC
Q 000201 613 KYGIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYVI-QM----------LPLLLVAFSDQV 670 (1866)
Q Consensus 613 ~~~ii~~L~~~i~~~~-----------~~~~r~~al~al~~L~~~l~~~~~p~v~-~l----------lp~ll~~~~D~~ 670 (1866)
..+.+|.|.+.+...+ ++..+..|..++..|+.+-++....... .+ .+.++.++..+.
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 4467777777776532 3688888999999999887654433211 11 133333333221
Q ss_pred -------HHHHH-------HHHHHHHHHHHhhcHh-hH--HhHHHHHHhhcC-----------CCChhhHHHHHHHHHHH
Q 000201 671 -------VAVRE-------AAECAARAMMSQLSAQ-GV--KLVLPSLLKGLE-----------DKAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 671 -------~~VR~-------~a~~al~~i~~~l~~~-~v--~~llp~L~~~L~-----------~~~w~~r~~a~~~L~~l 722 (1866)
..||+ .|.++|..++..-... .+ ...++.|+..|. +.+...+..|+.+|..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 12666 7888888875431111 11 235666666652 12356789999999999
Q ss_pred HhhChhhH--HhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhc
Q 000201 723 AYCAPQQL--SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQT 800 (1866)
Q Consensus 723 ~~~~~~~~--~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~ 800 (1866)
+.+.+..- .......+|.|+.+|...+++|+..|+++|..++.. .++... ..+.
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k------------------~~I~----- 283 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSK------------------KTLR----- 283 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHH------------------HHHH-----
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHH------------------HHHH-----
Confidence 98765321 112356789999999999999999999999998742 111110 0000
Q ss_pred cccccCCcchhhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh--HhhhhHHHHHHhcCCCH----hHH
Q 000201 801 TFVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVR 873 (1866)
Q Consensus 801 ~~~~~~~~~~l~~l~p~L~~~-l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~--~~~ll~~L~~~l~d~~~----~vR 873 (1866)
-...+|.|.+. +...+.+++..++.++.+++....+.+ ... ....+|.|..++.++.. +++
T Consensus 284 ----------~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~ 351 (458)
T 3nmz_A 284 ----------EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAII 351 (458)
T ss_dssp ----------HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred ----------HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence 01234555554 344567788888888888876221111 111 23578888888886654 489
Q ss_pred HHHHHHHHHHHhh--cCCCC-----hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChh---HH--HHHHHHHHHH
Q 000201 874 SVAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF--EHILPDIIRN 941 (1866)
Q Consensus 874 ~~a~~aL~~l~~~--~g~~~-----~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~---~l--~~ll~~l~~~ 941 (1866)
..|..+|..++.. .+++. -...+|.|+..|.+.. ..++..++.+|+.++..- .+ .+ ...+|.+.+.
T Consensus 352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~L 429 (458)
T 3nmz_A 352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNL 429 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHH
Confidence 9999999998862 12221 1247888998887654 458889999999887421 22 12 3567889999
Q ss_pred hccCChhHHhHHHHHHHHhhhhhchh
Q 000201 942 CSHQRASVRDGYLTLFKYLPRSLGVQ 967 (1866)
Q Consensus 942 l~~~~~~vR~~al~~l~~L~~~~g~~ 967 (1866)
+.+.++.+|+.+..++..|+..-+..
T Consensus 430 L~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 430 IHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 99999999999999999998765543
No 81
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.76 E-value=6.6e-05 Score=105.56 Aligned_cols=141 Identities=13% Similarity=0.001 Sum_probs=86.8
Q ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcCc--
Q 000201 576 VSRLLDQLMKS-DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRLF-- 651 (1866)
Q Consensus 576 l~~ll~~L~~~-~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~~-- 651 (1866)
+..++..+... .+...|+.|-..|..+-+.. + -...+...+ ....+...|..|...+......-...+
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 33444444443 24556888877777654432 1 122222222 244567788888877777765422222
Q ss_pred --hhcHH-hHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhh
Q 000201 652 --EPYVI-QMLPLLLVAFS---DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 725 (1866)
Q Consensus 652 --~p~v~-~llp~ll~~~~---D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~ 725 (1866)
..++. .++..+..... +....||.....++..|+..--+..++.+++.+.+.+++ +...+..++.+|..+.+-
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 22333 23444333221 256899999999999999886666778899999988866 456678888888888753
No 82
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.71 E-value=7.6e-07 Score=99.75 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=132.4
Q ss_pred CCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHhC---cCchhc-HHhH
Q 000201 586 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA---DRNSAKRREGALLAFECLCEKLG---RLFEPY-VIQM 658 (1866)
Q Consensus 586 ~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~---~~~~~~~r~~al~al~~L~~~l~---~~~~p~-v~~l 658 (1866)
++++..|..|...|...+.....+.+ ..++.+.+.+. .+++...-..++..+..+...++ ..+.+| ...+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 45778888888877776654321211 22233333322 13467777778888888776654 447777 5789
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+|.++..++|+++.||+.+.+.+..+....++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l 206 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSL 206 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGG
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----cccc
Confidence 99999999999999999999999888876554 4577888889999999999999999999987654432 2456
Q ss_pred ---HHHhhhccCCChHHHHHHHHHHHHHHhhccch
Q 000201 739 ---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 770 (1866)
Q Consensus 739 ---~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~ 770 (1866)
|.+.+++.|+++.||.+|..|+..+-...++.
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999999999999888877764
No 83
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.70 E-value=3.7e-07 Score=101.97 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=143.5
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
...|.+..++.++++.+|..|.+++..++..-... .+ ...+|.+++.|.++++.+|..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567778889999999999999999998533221 11 357899999999999999999999999999766544222
Q ss_pred hh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchh
Q 000201 733 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l 811 (1866)
.+ ...+|.++.++++.++.||..|+++|..++..- +.... .+ .-
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~---~~------------------------------~~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQ---AV------------------------------ID 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHH---HH------------------------------HH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHH---HH------------------------------HH
Confidence 11 368899999999999999999999999998522 11100 00 01
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhh-hHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHh
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~-~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~ 885 (1866)
...+|.+.+.+++.+.++|..++.++++++.. .+..... .-...++.|.+++.++++.+|..|..+|+.++.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 23567777778888889999999999999872 2111111 123578889999999999999999999998763
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.70 E-value=7.3e-06 Score=82.21 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCch
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 652 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~ 652 (1866)
.+.++.++. ++.++-|.+++.|..-+..+++... +.. ..++..|...+..+.....-+....+||.++..-+
T Consensus 31 ~~~l~~lI~-~LDDDlwtV~kNAl~vi~~i~~~~~-el~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---- 102 (253)
T 2db0_A 31 ESVLKKLIE-LLDDDLWTVVKNAISIIMVIAKTRE-DLY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---- 102 (253)
T ss_dssp HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCG-GGH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHH-HhccHHHHHHHhHHHHHHHHHHHhH-HHH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----
Confidence 344555544 3467789999999999999998762 211 12344444444443333344566778888887643
Q ss_pred hcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 653 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 653 p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
..+..++|.++....-.++.+|-....++..|+..- |.....++..+...+.+++---|..++.+++++.++.++...
T Consensus 103 e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~- 180 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN- 180 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG-
T ss_pred HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC-
Confidence 246788999999888889999999999999998754 455577888888899999988999999999999988776654
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
+.+|.+..+|.|.+..||..|+.+|..++.. +|.+..++..-++-+.|+++.+.
T Consensus 181 ---PfLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 181 ---PFLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp ---GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred ---cchHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 5567788899999999999999999999863 67788888888888899886543
No 85
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.67 E-value=2.4e-07 Score=103.51 Aligned_cols=189 Identities=20% Similarity=0.177 Sum_probs=143.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC--cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchh
Q 000201 576 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 653 (1866)
Q Consensus 576 l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g--~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p 653 (1866)
....+..|++++++.+|..|+.+|..+..+.. ...+...+.++.|.+.+.+. ++..|+.|+.+++.++.........
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 33455566678889999999999999986421 12233447889999988875 5788999999999887532211111
Q ss_pred cH-HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh--h-H-HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh
Q 000201 654 YV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 728 (1866)
Q Consensus 654 ~v-~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~--~-v-~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~ 728 (1866)
.+ ...+|.+...+.++++.+|..+.+++..++..-... . + ...+|.+++.+.+++..+|..++.+|+.++...+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 12 247899999999999999999999999997633221 1 1 45789999999999999999999999999987554
Q ss_pred hHHhh-hcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 729 QLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 729 ~~~~~-l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
..... -...++.+.+++.+.++.||..|+++|..++.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 42221 23688999999999999999999999998864
No 86
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.64 E-value=8.1e-05 Score=100.30 Aligned_cols=391 Identities=15% Similarity=0.103 Sum_probs=226.5
Q ss_pred hccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccc----hhhhhHHHHHHHHHHHhC-CCChhHHHHHHHHH
Q 000201 1340 LVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKL----YLVDEAPNMISTLIVLLS-DSDSTTVAAAWEAL 1414 (1866)
Q Consensus 1340 ~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~~il~~L~~ll~-d~~~~v~~~A~~aL 1414 (1866)
.++++..++.+.+.+...+.+.+...+..+++.++.+....+. ........+.+.+...++ +-.++....-..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4566666777888887777888888888999999888765432 223333445555556677 56777666555556
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHhhhh---hh-hhhhhcCCc--cc------cCCcCCCCCccccHHHHHHhhccCCHHH
Q 000201 1415 SRVVASVPKEVQPSYIKVIRDAISTSR---DK-ERRKKKGGP--IL------IPGFCLPKALQPLLPIFLQGLISGSAEL 1482 (1866)
Q Consensus 1415 ~~l~~~~~~~~l~~l~~~l~~~l~~~~---~~-~~~~~~~~~--~~------l~g~~~~~~l~~ilp~l~~~L~~~~~~~ 1482 (1866)
..+....+..-.+.++. .+.... +. ......... .. -.|.-.+. ...++..++ +.++...+
T Consensus 579 ~~~~~~~DprR~~~L~e----~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~V 651 (997)
T 1vsy_5 579 WWLPAVVDLRRSKTFFC----HFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQV 651 (997)
T ss_dssp HHHHHHSCGGGCHHHHH----HHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHH
T ss_pred HHHhcCCChhhhHHHHH----HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHH
Confidence 66655554443343333 221110 00 000000000 00 01111222 344444444 56667889
Q ss_pred HHHHHHHHHHHHhhcChh---hhh---------------------hhhhhhhHHHHHHhc-------CCCCH-HH---HH
Q 000201 1483 REQAALGLGELIEVTSEQ---SLK---------------------EFVIPITGPLIRIIG-------DRFPW-QV---KS 1527 (1866)
Q Consensus 1483 r~~a~~~L~~l~~~~~~~---~l~---------------------~~v~~i~~~Li~~l~-------~~~~~-~v---r~ 1527 (1866)
|+..+..++.++...-.. ... +.+...+..+...+. ++.+. .. -.
T Consensus 652 Re~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~ 731 (997)
T 1vsy_5 652 RQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYF 731 (997)
T ss_dssp HHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHH
Confidence 999999988887654100 000 000110111111111 11110 01 11
Q ss_pred HHHHHHH-HHHHhcCCC----CCCchHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHhccCChhhHHHHHHHHhcc--
Q 000201 1528 AILSTLS-IIIRKGGIA----LKPFLPQ-LQTTFIKCLQDSTR-TVRSS-AALALGKLSALSTRVDPLVGDLLSSLQV-- 1597 (1866)
Q Consensus 1528 ~al~~L~-~L~~~~~~~----~~~~lp~-L~~~l~~~l~d~~~-~vR~~-Aa~aLg~L~~~~~~~~~~l~~L~~~l~~-- 1597 (1866)
..+.|+. -+...++.. +.|+++. ++|.+++..+..+. ++... |..++..+.. .+-....++.++..+..
T Consensus 732 ~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~-~~~~~~~~~~~l~~l~~~~ 810 (997)
T 1vsy_5 732 YRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGY-MPIRKNHVAAIVDYVCSSN 810 (997)
T ss_dssp HHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSS-SCCCHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHH
Confidence 1222332 233333332 3344444 55555555555543 55555 5566665532 23345556666666532
Q ss_pred ---CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHH
Q 000201 1598 ---SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD-DHVRVSAASILGIMSQCM-EDGQLADLLQELL 1672 (1866)
Q Consensus 1598 ---~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~-~~vr~~aa~~l~~L~~~~-~~~~~~~~l~~ll 1672 (1866)
++. .|..++.-+..++.+----++......|++.+...+.|+. -+||+.|+.+|+.+.+.. +......++..+-
T Consensus 811 ~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~ 889 (997)
T 1vsy_5 811 VALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFA 889 (997)
T ss_dssp TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHT
T ss_pred hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 356 8999988887776644334555666899999999999999 999999999999998887 6344555555554
Q ss_pred hccCC------------CCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhh
Q 000201 1673 NLASS------------PSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQ 1740 (1866)
Q Consensus 1673 ~~~~~------------~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~ 1740 (1866)
++... .....||+++++|.+++..+|-.+-.+++.++++..+.....+++ +++.++-.+++..-...
T Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 890 KGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKVR 968 (997)
T ss_dssp TSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHHT
T ss_pred HHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhcc
Confidence 44422 111468999999999999999776446678889999998888854 49999989888876544
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.59 E-value=1.3e-05 Score=80.45 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=162.0
Q ss_pred hhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHH
Q 000201 852 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 931 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l 931 (1866)
.|-..++..+...+.|.-|.||+-|...+..+++...+ .+..++..|+..++.++.....+..+..+|.++.. .++..
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v 105 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV 105 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH
Confidence 45567888999999999999999999999999986653 45667777877777666655556666677766653 45677
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchh
Q 000201 932 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1011 (1866)
Q Consensus 932 ~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~ 1011 (1866)
..++|.++.+..-.++..|.+.-.+++.++...+. .++.++.-+...+.+++..-|.+++..+..+..+. .+.+.
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~yv~ 180 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FKYVN 180 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHHHG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-ccccC
Confidence 88999999999888999999999999999998876 45667777788888888777777776555443332 23456
Q ss_pred chHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcC
Q 000201 1012 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1091 (1866)
Q Consensus 1012 ~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~ 1091 (1866)
.++|.+...+.|.+.-+|.++++.++.+...- +.+..++...+...+
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n---------------------------------pklRkii~~kl~e~~ 227 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLN---------------------------------DKLRKVVIKRLEELN 227 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC---------------------------------HHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcC---------------------------------HHHHHHHHHHHHHhc
Confidence 68899999999999999999999999874210 111223333334568
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 000201 1092 DVSLSVRQAALHVWKTIV 1109 (1866)
Q Consensus 1092 D~~~~vR~~A~~~l~~l~ 1109 (1866)
|.+..|.....+.++.+.
T Consensus 228 D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 228 DTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 888888777777666654
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.57 E-value=6e-07 Score=104.92 Aligned_cols=195 Identities=14% Similarity=0.172 Sum_probs=141.5
Q ss_pred HhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHH
Q 000201 1017 VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1096 (1866)
Q Consensus 1017 l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~ 1096 (1866)
+.+.+.+++|+.|.++++-+..++....... .+|+. .. .+.+....+.....|.+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~~----------~~-----~~~~~~~~lkk~l~DsN~~ 70 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDDN----------IQ-----IYWRDPTLFAQYITDSNVV 70 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------C-----CTTSCTHHHHHHTTCSSHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchhH----------HH-----HHHHHHHHHHHHhccchHH
Confidence 5677889999999999998887764322110 00000 00 0112223333456899999
Q ss_pred HHHHHHHHHHHHhhcCh------hhHHHhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHhccccccchHHHHhccc
Q 000201 1097 VRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1169 (1866)
Q Consensus 1097 vR~~A~~~l~~l~~~~p------~~l~~~l~~l~~~L~~~-l~~~~~~~R~~A~~~L~~lv~~~~~~~l~~llp~L~~~L 1169 (1866)
|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++..... ...+++.+..++
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~~~l 148 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVIPFF 148 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHH
Confidence 99999999999987543 23445677778877764 8899999999999999888865432 345567778888
Q ss_pred CCCCccchhhHHHHHHHHHHhhchhh--HHhhHhhHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhchh
Q 000201 1170 KDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1236 (1866)
Q Consensus 1170 ~d~~~~vr~~a~~~L~~li~~~~~~~--l~~~l~~ll~~l~~~L~d~~~~vr~~A~~al~~l~~~~g~~ 1236 (1866)
.+.+|.+|.+++.+|..++..+|... ..+.++.+++.+.+++.|.++.||++|..++..++..+|+.
T Consensus 149 ~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 149 EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998877543 34566778888889999999999999999999999988863
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.56 E-value=9.5e-07 Score=103.23 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=138.7
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHhhChhh-----HHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-----
Q 000201 700 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 769 (1866)
Q Consensus 700 L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-----~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~----- 769 (1866)
+.+.|.+++|..|..|++.|..+....+.. ....+..+.+.+.+.+.|++..|...++.++..++.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 568899999999999999999888765433 2223556677778889999999999999999999875542
Q ss_pred ----hhHHhHHHHHHHh-hCCCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Q 000201 770 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 843 (1866)
Q Consensus 770 ----~~i~~lv~~L~~~-l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~ 843 (1866)
..+..++|.++.. +.++...++ .++..+....... .....+++.+..++++.++.+|..++.++..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346678887764 788887776 4555554421111 12345678888899999999999999999998876
Q ss_pred cCCC-cchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 844 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 844 l~~~-~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
++.. ....+.++.+++.+..++.|.++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 6542 2345567788999999999999999999999999999999864
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.49 E-value=3.4e-06 Score=94.52 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=144.1
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc-------hh
Q 000201 699 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 771 (1866)
Q Consensus 699 ~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~-------~~ 771 (1866)
.+...|.+++|+.+..+++.|.......++.+...+.-+++-+.-.+.|+++.|-..+...|..+...+.+ .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45666788899999999999998888788777776666666655556699999999999999988765542 23
Q ss_pred HHhHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchh
Q 000201 772 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 851 (1866)
Q Consensus 772 i~~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~ 851 (1866)
...++|.|+..+.|+.+.+|+....+...-. .+ .....+.+.+..++++.+|.+|..+++.++.+....|-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~--~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS--DV--VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH--HH--HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HH--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 5679999999999999999865554443100 00 123457888999999999999999999999999876553
Q ss_pred hhHhhhh---HHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 852 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 852 ~~~~~ll---~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
+ ...+ +.+.+++.|++..||..|..++..+....|+..
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 3356 888999999999999999999999999998763
No 91
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.42 E-value=7.5e-06 Score=95.28 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHhCcCchhcH-HhHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhc
Q 000201 631 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL 704 (1866)
Q Consensus 631 ~~r~~al~al~~L~~~l~~~~~p~v-~~llp~ll~-~~~D~~~~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L 704 (1866)
..|..|+..|..+++.... -..+. ...+|.++. ++.++++.||..|+++++.++..-+.. .+ ...+|.|+..|
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 4666777777777764331 01111 246788888 999999999999999999998754322 12 35789999988
Q ss_pred CC-CChhhHHHHHHHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 705 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 705 ~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.+ ++..+|..|+.+|+.++.+.+....... ...+|.|..+|++.++.|+..|+++|..++..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 74 5789999999999999988765432221 36889999999999999999999999999865
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.38 E-value=1.4e-05 Score=95.66 Aligned_cols=225 Identities=15% Similarity=0.108 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHhCcCchhcH---HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH---hhH--HhHHHHHH
Q 000201 630 AKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLL 701 (1866)
Q Consensus 630 ~~~r~~al~al~~L~~~l~~~~~p~v---~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~---~~v--~~llp~L~ 701 (1866)
...+..|..++..|+.+-.. ....+ ..++|.|...+..+++.++..|.++|..++..-.+ ..+ ...+|.|+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 45667788888888743221 12222 34699999999999999999999999999764222 122 34688898
Q ss_pred hhc-CCCChhhHHHHHHHHHHHHhhChhh-HHhh-hcchhHHHhhhccCCCh----HHHHHHHHHHHHHHhhcc-chhHH
Q 000201 702 KGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVIK-NPEIA 773 (1866)
Q Consensus 702 ~~L-~~~~w~~r~~a~~~L~~l~~~~~~~-~~~~-l~~iv~~l~~~L~D~~~----~VR~aA~~aL~~l~~~i~-~~~i~ 773 (1866)
+.| .+.+..++..++.+|.+++...++. ..-. -...+|.|++++.+.++ +|+..|+++|..++..+. +++..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 874 6678899999999999999855332 1111 35788999999987654 599999999999885321 22111
Q ss_pred hHHHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh
Q 000201 774 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 853 (1866)
Q Consensus 774 ~lv~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~ 853 (1866)
. . +. -...+|.|...+.+.+.+++..|+.++.+++. ++++.....
T Consensus 257 ~------------------~---i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i 301 (354)
T 3nmw_A 257 Q------------------I---LR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEAL 301 (354)
T ss_dssp H------------------H---HH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHH
T ss_pred H------------------H---HH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 0 0 00 01246777777888888999999999999985 222222111
Q ss_pred H-hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCC
Q 000201 854 I-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 890 (1866)
Q Consensus 854 ~-~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~ 890 (1866)
. ...+|.|.+++.+++..+|+.|..+|..++..-+..
T Consensus 302 ~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 302 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 346889999999999999999999999999864443
No 93
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.35 E-value=1.1e-05 Score=96.46 Aligned_cols=254 Identities=15% Similarity=0.086 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHhhhhccCCcch--HHHHHHHHHhcC-----------CCcHHHHHHHHhhhhhhhHhhhh---hh---
Q 000201 512 LVREGVVIFTGALAKHLAKDDPKV--HAVVDKLLDVLN-----------TPSEAVQRAVSSCLSPLMQSMQD---EA--- 572 (1866)
Q Consensus 512 ~vr~~av~~l~~i~~~l~~~~~~~--~~l~~~l~~~l~-----------~~~~~v~~~~~~~l~~lv~~~~~---~~--- 572 (1866)
.....|+-+|+.++..-+. ...+ ...++.++..|. ..++.+|..++.+|..+.....+ ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~-R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455677777777743110 0001 023344444442 12456888888888776643221 11
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhC---cchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCc
Q 000201 573 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 649 (1866)
Q Consensus 573 ~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g---~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~ 649 (1866)
...++.|+..| .+++..++..|+.+|..+..+-. ...+...+.+|.|.+.+....+...++.|+.++..|+.....
T Consensus 126 ~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 126 KGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 23466666544 56777899999999999986411 223334577888888754444567788888888888863321
Q ss_pred CchhcH--HhHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--cHhhH-----HhHHHHHHhhcCCCChhhHHHHH
Q 000201 650 LFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQGV-----KLVLPSLLKGLEDKAWRTKQSSV 716 (1866)
Q Consensus 650 ~~~p~v--~~llp~ll~~~~D~~~----~VR~~a~~al~~i~~~l--~~~~v-----~~llp~L~~~L~~~~w~~r~~a~ 716 (1866)
.-...+ ...+|.|...+.+.++ .+++.+..++..+...+ .+... ...+|.|++.|.+.+..++..|+
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence 112222 3688999998887654 59999999999987632 22221 34789999999999999999999
Q ss_pred HHHHHHHhhChhhHHhhh-cchhHHHhhhccCCChHHHHHHHHHHHHHHhhc
Q 000201 717 QLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 767 (1866)
Q Consensus 717 ~~L~~l~~~~~~~~~~~l-~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i 767 (1866)
.+|.+++.+.+++..... ...+|.|..++.+.++++|..|+++|..+...-
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999976655432211 368899999999999999999999999999753
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.34 E-value=3.4e-06 Score=99.42 Aligned_cols=254 Identities=12% Similarity=0.112 Sum_probs=165.6
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 696 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 696 llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
+...|...|.+++|.+|+||+..|..+....+..-... .. .+.+--+|-.|+-+|.+++..+++..+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~---------~~-~N~DLAvRLLCVLALDRFGDYVSDqVVA-- 242 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ---------IR-VDSKLFSKIYEILVTDKFNDFVDDRTVA-- 242 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC---------CC-CCTTHHHHHHHHHHHBCCBBCSSSSCBC--
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee---------cc-ccHHHHHHHHHHHHhccccccccCeeee--
Confidence 77788888999999999999999999988754321111 01 1124556666777777777666543221
Q ss_pred HHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhH
Q 000201 776 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 854 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~ 854 (1866)
-||+ |.++|+.. .+-.+ + -.++-.+...+....|++|..+.-.+..+...+ .-+
T Consensus 243 -------------PVRETaAQtLGaL--~hLp~-e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-------~~L 297 (800)
T 3oc3_A 243 -------------PVRDAAAYLLSRI--YPLIG-P--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-------EDK 297 (800)
T ss_dssp -------------HHHHHHHHHHHHH--TTTSC-S--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-------CCH
T ss_pred -------------ehHHHHHHHHHHH--HhCCh-h--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-------HHH
Confidence 2442 33333332 11111 1 233444445557788999998887777773322 127
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCH-HHHHHHHHHHHHHHHHhChh-HHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV-YFE 932 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~-~~R~~a~~~L~~l~~~~g~~-~l~ 932 (1866)
+.+++.+...|.|++.+||..|+.+|--++ .++.++.++..+++.|.+.++- .-....++.|+.++..-... ..+
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp 374 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPP 374 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCS
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccCh
Confidence 889999999999999999999999988877 5567888899888888753221 12234445566665533211 224
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHh-hccCCChHHHHHHHHHHH
Q 000201 933 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD-GLADENESVRDAALGAGH 999 (1866)
Q Consensus 933 ~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~-~l~d~~~~VR~~a~~al~ 999 (1866)
.++|.+...+.++-+.||.+++.++..+. . ..++..+++ .+-+++++|+..+.+.+.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~--------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS--E--------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC--C--------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH--h--------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 78888999999999999999988887665 1 223333333 345788999988887765
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.21 E-value=8e-05 Score=78.82 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=160.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHHhh----cccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCccc
Q 000201 974 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1049 (1866)
Q Consensus 974 ~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~----~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~ 1049 (1866)
..+..+...+.|.++.++..++.++..+.+.. ....++.++|.+.+...++|.++-..|+++++.++...+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp----- 107 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP----- 107 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-----
Confidence 35666788889999999999999999998874 334567789999999999999999999999999874322
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHHH
Q 000201 1050 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1129 (1866)
Q Consensus 1050 ~~~~~~~ed~~~~~e~~~~~l~~~lg~~~~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~p~~l~~~l~~l~~~L~~ 1129 (1866)
++.+.+..+..++.....+.+...+..|.+.++.+-.. ...+.+...+.+
T Consensus 108 ------------------------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~------~~~~~V~~~l~s 157 (265)
T 3b2a_A 108 ------------------------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL------EDSKLVRTYINE 157 (265)
T ss_dssp ------------------------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS------CCCHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcc------cchHHHHHHHHH
Confidence 12233445566666566788889999999999988222 234566777777
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhccc-cccchHHHHhcccCCCCccchhhHHHHHHHHHHhhchhhHHhhHhhHHHHHH
Q 000201 1130 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1208 (1866)
Q Consensus 1130 ~l~~~~~~~R~~A~~~L~~lv~~~~~~-~l~~llp~L~~~L~d~~~~vr~~a~~~L~~li~~~~~~~l~~~l~~ll~~l~ 1208 (1866)
.+.+++..++.+|..++.++....+++ ++..++.-+...+++.++.++.-++..+.+++..--++.+.+.+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 788999999999999999998876654 6777777777788888999999999998887644222333333344444444
Q ss_pred Hhh-cCCcHHHHHHHHHH
Q 000201 1209 TAL-CDSILEVRESAGLA 1225 (1866)
Q Consensus 1209 ~~L-~d~~~~vr~~A~~a 1225 (1866)
... -...|.+|..|...
T Consensus 238 ~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp HGGGCSSCHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHH
Confidence 444 46678888877543
No 96
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.19 E-value=1.5e-05 Score=92.64 Aligned_cols=175 Identities=18% Similarity=0.139 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHhhhCc-chhhhcchHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHH--hHHHHHHHH
Q 000201 590 GERRGAAFGLAGVVKGFGI-SSLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 665 (1866)
Q Consensus 590 ~~R~~A~~~L~~l~~~~g~-~~l~~~~ii~~L~~-~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~--~llp~ll~~ 665 (1866)
..|..|+..|..++..... ..+...+.+|.+.. .+.+ .++..|+.|+.+++.++..-+. ....+. ..+|.|+.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 4677788888887775431 11223456777777 7765 4678999999999999865332 222222 578888888
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhcH--hhH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh-cchhH
Q 000201 666 FS-DQVVAVREAAECAARAMMSQLSA--QGV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 739 (1866)
Q Consensus 666 ~~-D~~~~VR~~a~~al~~i~~~l~~--~~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l-~~iv~ 739 (1866)
+. +++..+|+.|.+++..++...++ ..+ ...+|.|...|.+++..+|..|+.+|++++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 56899999999999999875443 223 35789999999999999999999999999988665432211 37889
Q ss_pred HHhhhccCCChHHHHHHHHHHHHHHhh
Q 000201 740 KLTEVLTDTHPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 740 ~l~~~L~D~~~~VR~aA~~aL~~l~~~ 766 (1866)
.|+.+|.++++.||..|+.+|+.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999865
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.94 E-value=0.003 Score=78.68 Aligned_cols=321 Identities=18% Similarity=0.202 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~-~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
..+.++.|.+.+.++.-...||.|..+|..+.+....... ..-++.|...++++ .|..
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg--~~~l~~li~~L~~d~~D~e------------------- 77 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG--IQAMEHLIHVLQTDRSDSE------------------- 77 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH--HHTHHHHHHHHHSCTTCHH-------------------
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh--hhhHHHHHHHHhcccccHH-------------------
Confidence 5678889999998888889999999999999886532221 12245555555432 2221
Q ss_pred chhcHHhHHHHHHHHcC-CCCHH--------HHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHH
Q 000201 651 FEPYVIQMLPLLLVAFS-DQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 721 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~-D~~~~--------VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~ 721 (1866)
.+..++..++..+. |+++. ..+.+.+-...+.+. +.-++.|+..|++.+..+|..++++|..
T Consensus 78 ---~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 78 ---IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp ---HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 12233333333222 11110 111112222222211 3467888999999999999999999999
Q ss_pred HHhhChhhHHhh---hcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhH------HhHHHHHHHhhCCCCh----
Q 000201 722 MAYCAPQQLSQC---LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPND---- 788 (1866)
Q Consensus 722 l~~~~~~~~~~~---l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i------~~lv~~L~~~l~d~~~---- 788 (1866)
++.+.+.....+ -|.-++.|+.+|.|++..+|..+.-.|..+++. ++++ +..++.|.+.+.....
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Gg 226 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKIVAFENAFERLLDIITEEGNSDGG 226 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHTGGGSH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHHHHHhccHHHHHHHHHhcCCCccc
Confidence 999988865543 357889999999999999999999999999863 4444 3456777777654332
Q ss_pred -hHHHHHHHHHhc-cccc-----cCCcchhhhHHHHHHHhhcCCCHHHHH--H---HHHHHHHHhhhcCCC-----cchh
Q 000201 789 -HTKYSLDILLQT-TFVN-----TVDAPSLALLVPIVHRGLRERSAETKK--K---AAQIVGNMCSLVTEP-----KDMI 851 (1866)
Q Consensus 789 -~vr~al~~L~~~-~~~~-----~~~~~~l~~l~p~L~~~l~d~~~~vr~--~---a~~~l~~l~~~l~~~-----~~l~ 851 (1866)
-+..|+..+... .+.. .......+.+.|.+...-....|..++ . +.+++..++..-+.. .+-.
T Consensus 227 ivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~ 306 (651)
T 3grl_A 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA 306 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 244666655541 1100 000011222222221110112232222 1 334444444321110 0001
Q ss_pred hhHhhhhHHHHHHhcCC--CHhHHHHHHHHHHHHHhhcCC--C-----------ChhhHHHHHHHhcccCCCHHHHHHHH
Q 000201 852 PYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGE--E-----------NFPDLVSWLLDALKSDNSNVERSGAA 916 (1866)
Q Consensus 852 ~~~~~ll~~L~~~l~d~--~~~vR~~a~~aL~~l~~~~g~--~-----------~~~~l~~~L~~~L~~~~~~~~R~~a~ 916 (1866)
-+-..+++.+.+++..+ ...+|..|..+++.++..... + ..+.++..|+..+.+......|.+++
T Consensus 307 ~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~ 386 (651)
T 3grl_A 307 MFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386 (651)
T ss_dssp HHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHH
Confidence 12223566666666544 567999999999998864321 0 12345665666666666677898888
Q ss_pred HHHHHHHH
Q 000201 917 QGLSEVLA 924 (1866)
Q Consensus 917 ~~L~~l~~ 924 (1866)
.++..+..
T Consensus 387 ~cl~ay~~ 394 (651)
T 3grl_A 387 YCFQCFLY 394 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88876654
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.94 E-value=0.00011 Score=86.51 Aligned_cols=277 Identities=10% Similarity=0.055 Sum_probs=151.0
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchhhhH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 814 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l 814 (1866)
.+++.+++++..++...|+...-.+..+++. . +++--.++.+.+-+++|++.+| -|+..+... .+......+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I-----~~~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQI-----TDSTMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCTTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcC-----CCHHHHHHH
Confidence 6777788999999999999999999998876 2 3344678889999999999998 578877663 223456788
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhh
Q 000201 815 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 894 (1866)
Q Consensus 815 ~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~ 894 (1866)
.+.+.+.+.|+++.||+.|+-+...++.. .++ ....+++.+.+++.|.++-|...|..++..+... +...+..
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~k 213 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSK 213 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHH
Confidence 99999999999999999999888887762 222 2345778888899999999987666666666542 1112333
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHH
Q 000201 895 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 974 (1866)
Q Consensus 895 l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~ 974 (1866)
+++.+.+. .-.++......+..++.++..-..+.-..+++.+...+++.++.|--.+..++-.+...... .+..
T Consensus 214 Lv~~l~~~--~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~~~ 287 (355)
T 3tjz_B 214 MISKFTRH--GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----ELAP 287 (355)
T ss_dssp HHHHHHSS--CCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------
T ss_pred HHHHHhcC--CCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HHHH
Confidence 44433221 01112122222222222222110112245666667777888888887777777766553222 2233
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHhhcccchhchHHhHhcccCCCchHHHHHHH
Q 000201 975 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1033 (1866)
Q Consensus 975 il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~ 1033 (1866)
.+..+...+..+++++|..+++.+..+....+ ..+...-..+++.+.|+|-.++.-++
T Consensus 288 a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 288 AVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHccCCcHhHHHHHH
Confidence 44555666777888999999999888877654 34444556677777777766665443
No 99
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.82 E-value=0.0057 Score=65.01 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=159.3
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh----cHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQL----SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l----~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
..+..+...+.|.++.|+..+..++..+.+.. ....++.++|.+++.+.+++-++-.-|+.+|+.+.++.|-.- .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~-~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS-K 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH-H
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH-H
Confidence 46677888899999999999999999999984 445679999999999999999999999999999999865332 2
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH-HHHHHHHhccccccCCcchh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
.+..+...+.....+.++-++..+...++.+ +... ....++..+...+..++..++ .++..+.++... ..|...+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~-S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS-SADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG-CSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc--chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc-cCCHHHH
Confidence 3457778888889999999999999999998 3222 234556666666677777777 466666653221 2233456
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHh-cCCCHhHHHHHHH
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAAR 878 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l-~d~~~~vR~~a~~ 878 (1866)
..++..+...++..++.++..|..++..+.+. .-+..+.+-+-.+...+..+. -.+.|.+|..|-.
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF-PLLENVKIELLKISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 77777888888899999999999999998873 122333333444555555554 4566777766543
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.79 E-value=0.0004 Score=81.85 Aligned_cols=314 Identities=10% Similarity=0.075 Sum_probs=159.4
Q ss_pred HHHHHHHHcCCCCHHHHH---HHHHHHHHHHH--hhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 658 MLPLLLVAFSDQVVAVRE---AAECAARAMMS--QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~---~a~~al~~i~~--~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
++.- ...|.++..+.|+ .....+..+.. .++......+++.+++.+.+++...|+..-..+..++.. +++
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e--- 101 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED--- 101 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC---
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH---
Confidence 4444 2466776444443 22333332222 233334577899999999999999999877777776665 222
Q ss_pred hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHH-HHHHHHhccccccCCcchh
Q 000201 733 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 733 ~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~-al~~L~~~~~~~~~~~~~l 811 (1866)
.+ -++..+.+=++|+++-+|..|.++|+.+.. ...++.+.+.+.+++.|+++++|. |+-..... ........
T Consensus 102 ~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL---~~~~pe~v 174 (355)
T 3tjz_B 102 VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHL---LKCSFDVV 174 (355)
T ss_dssp GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---TTTCHHHH
T ss_pred HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---hccCHHHH
Confidence 12 456777888999999999999999998852 234588899999999999999994 33332221 11222234
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCC
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 891 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~ 891 (1866)
..+++.+...+.|+++-+..+|..++..+... + ...+..+++.+... .-.++-.+-...+.++.+...-.++.
T Consensus 175 ~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~--d----~~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~~~~ 247 (355)
T 3tjz_B 175 KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN--D----RLAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDEDGSR 247 (355)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh--c----hHHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccchhh
Confidence 56778888889999999999888888887752 2 11223334333221 01123333333444333332211122
Q ss_pred hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhH
Q 000201 892 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 971 (1866)
Q Consensus 892 ~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~ 971 (1866)
-..+++.+...+++ .+..+.-+++..+-.+.. .+...+...++.+...+.++++++|-.++..+..+....+..+..+
T Consensus 248 ~~~~~~~l~~~L~~-~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~ 325 (355)
T 3tjz_B 248 DSPLFDFIESCLRN-KHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC 325 (355)
T ss_dssp ---------CCCCC-SSHHHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH
Confidence 34566767666664 445577777777654433 2222233334445555778899999999998888888777655443
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHH
Q 000201 972 LQQVLPAILDGLADENESVRDAALG 996 (1866)
Q Consensus 972 l~~il~~ll~~l~d~~~~VR~~a~~ 996 (1866)
-.-+..+++|++..++.-|+.
T Consensus 326 ----n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 326 ----NLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -------------------------
T ss_pred ----HHHHHHHccCCcHhHHHHHHH
Confidence 334566778888777655543
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.70 E-value=6.4e-06 Score=83.73 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=77.0
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 735 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~ 735 (1866)
...++.+...+.|+++.||..+.+++..+.. . . +|.|.+.|++++|.+|..++..|+.+.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E---A-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T---T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h---H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------H
Confidence 3456677778889999999988887765422 1 1 4788888899999999999999887653 2
Q ss_pred chhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHH
Q 000201 736 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 791 (1866)
Q Consensus 736 ~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr 791 (1866)
..++.+...++|+++.||..|+++|+.++. ...+|.|.+.+.|++..+|
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHH
Confidence 456777888889999999999999998862 2346667777777766666
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.63 E-value=6.6e-06 Score=91.97 Aligned_cols=188 Identities=19% Similarity=0.159 Sum_probs=111.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhH
Q 000201 579 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 658 (1866)
Q Consensus 579 ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~l 658 (1866)
++..+..++++.+|+.++..+ ++.. +..+++ +.++.+|..+... ++.
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l-------~~~~---------l~~L~~-D~~~~VR~~aA~~-------L~~--------- 100 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYS-------PVEA---------LTPLIR-DSDEVVRRAVAYR-------LPR--------- 100 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS-------CGGG---------GGGGTT-CSSHHHHHHHHTT-------SCS---------
T ss_pred HHHHHhcCCCHHHHHHHHHhC-------CHHH---------HHHHcc-CcCHHHHHHHHHH-------CCH---------
Confidence 345566788889999988753 1111 122233 3467777766542 221
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh
Q 000201 659 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 738 (1866)
Q Consensus 659 lp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv 738 (1866)
+.+...++|++..||..++..+ +. +.+...++|++|.+|.+++..+ + .
T Consensus 101 -~~L~~ll~D~d~~VR~~aA~~l-------~~-------~~L~~L~~D~d~~VR~~aA~~l-------~----------~ 148 (244)
T 1lrv_A 101 -EQLSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------P----------P 148 (244)
T ss_dssp -GGGGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------C----------G
T ss_pred -HHHHHHHcCCCHHHHHHHHHhC-------CH-------HHHHHHHcCCCHHHHHHHHHhc-------C----------H
Confidence 2345567888888988877742 21 1234446788888888877521 1 1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCChhHHHH-HHHHHhccccccCCcchhhhHHHH
Q 000201 739 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPI 817 (1866)
Q Consensus 739 ~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~~~vr~a-l~~L~~~~~~~~~~~~~l~~l~p~ 817 (1866)
+.+..+++|+++.||.++...+ .. +.+...+.|+++.||.+ ...+ -.+.
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l----------------~~~~ 198 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRL----------------RGDD 198 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHC----------------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhC----------------CHHH
Confidence 1344677888888888887751 11 23345667887777743 2221 0134
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHH
Q 000201 818 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 881 (1866)
Q Consensus 818 L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~ 881 (1866)
+...++|.+|.||..+...++ .+.+..+ .|++|.||..+...||
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 555677888888887665422 1334444 7888888877766554
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.50 E-value=8.2e-05 Score=75.45 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=84.9
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhH
Q 000201 617 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 696 (1866)
Q Consensus 617 i~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~l 696 (1866)
++.+...++++ ++..|..|+.+++.+ + .+ .+|.+...+.|+++.||..+.+++..+.. +..
T Consensus 14 ~~~l~~~L~~~-~~~vR~~A~~~L~~~----~---~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a 74 (131)
T 1te4_A 14 LVPRGSHMADE-NKWVRRDVSTALSRM----G---DE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------ERA 74 (131)
T ss_dssp -------CCSS-CCCSSSSCCSSTTSC----S---ST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHh----C---ch----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 44555555553 456676666654322 1 11 14788889999999999999999887642 346
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHH
Q 000201 697 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 762 (1866)
Q Consensus 697 lp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~ 762 (1866)
+|.+...+++++|.+|..++..|+.+.. +..++.|...++|+++.||..|.++|+.
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 7888888899999999999999998752 3567788889999999999999999865
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.44 E-value=0.0023 Score=69.07 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=123.4
Q ss_pred chHHHHHHHHHhcCCCcHHHHHHHHhhhhhhhHhhhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhh
Q 000201 534 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK 613 (1866)
Q Consensus 534 ~~~~l~~~l~~~l~~~~~~v~~~~~~~l~~lv~~~~~~~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~ 613 (1866)
+|+..+..+.+.+..-..-|+.---.+.. +.. ....+.+..++..|.+++..++|.-|+..|+.. . . .
T Consensus 34 ~~~~~~~~~~~~~~~~~~gf~~~~~~a~~-~~~---~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~--~ 101 (240)
T 3l9t_A 34 SMKQYVARLEKDFSLIEHGFKEEEQRALT-DYK---SNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----K--D 101 (240)
T ss_dssp CHHHHHHHHHHHHTC-----CHHHHHHHH-HHH---HSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----T--S
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHH-HHH---hCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----C--c
Confidence 46666666666655433233222111111 111 112456667888999999899999999977765 2 1 2
Q ss_pred cchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcH-hh
Q 000201 614 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QG 692 (1866)
Q Consensus 614 ~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~-~~ 692 (1866)
.++++++...+.++++|.+|+.+..+|+.++...+. ...++.+.....|++..||..|.+.+......... ..
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~d 175 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN 175 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTC
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcC
Confidence 357888888555567899999999999999874332 13677888899999999999999887543322111 12
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHH
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 731 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~ 731 (1866)
...++|.+.....|+++.+|++....|..+++..|+-+.
T Consensus 176 p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 176 PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 366888888888999999999999999999998876543
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.41 E-value=0.099 Score=65.29 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC---hhHHHHHHHHHhccccccCCc---------c-----
Q 000201 747 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDA---------P----- 809 (1866)
Q Consensus 747 D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~---~~vr~al~~L~~~~~~~~~~~---------~----- 809 (1866)
.+-.+=|.+|+.+|+.+++..+...-..-+|.|+..+.+.. +-++.++++|.........+. .
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQ 112 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHH
Confidence 44566799999999999987665444555677777665433 336677887765211111000 0
Q ss_pred h------hhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCCCcchhhh---HhhhhHHHHHHhcCCCHhHHHHHHHHH
Q 000201 810 S------LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAI 880 (1866)
Q Consensus 810 ~------l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~---~~~ll~~L~~~l~d~~~~vR~~a~~aL 880 (1866)
. -..-++.|...+++.+..+|..+.+++..++.. .+...... .+.-++.|..+|.|+...+|..+...|
T Consensus 113 ~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~--r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 113 FTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ--LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc--CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 0 123478888899999999999999999999973 32222222 235788899999999999999999999
Q ss_pred HHHHhhcCCC----ChhhHHHHHHHhcccCCC---HHHHHHHHHHHHHHHHH
Q 000201 881 GSLIRGMGEE----NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 881 ~~l~~~~g~~----~~~~l~~~L~~~L~~~~~---~~~R~~a~~~L~~l~~~ 925 (1866)
..++..-.+- .|+..++.|++.+..+.. ..+...++..+..+++.
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 9998854321 355667777777765432 22334445555555554
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.38 E-value=0.26 Score=64.82 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=58.6
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchh-HHHhhhccCCChHHHHHHHHHHHHHHhhccchh--
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV-PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-- 771 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv-~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~-- 771 (1866)
.++| +++.|.++++..|.+|+.+|+.++......-.-.-..++ +.+..+|.|++.+||.+|.++|+.++..-+...
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4555 446688889999999999999998643222111122444 456678999999999999999999985432211
Q ss_pred --H-HhHHHHHHHhh
Q 000201 772 --I-ASLVPTLLMGL 783 (1866)
Q Consensus 772 --i-~~lv~~L~~~l 783 (1866)
+ ..+++.|...+
T Consensus 114 ~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHcChHHHHHHHH
Confidence 1 33566555543
No 107
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.35 E-value=5.4e-05 Score=84.64 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=21.0
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHH
Q 000201 664 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 717 (1866)
Q Consensus 664 ~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~ 717 (1866)
.+..|+++.||..++..+ +. +.+...++|++|.+|..++.
T Consensus 81 ~L~~D~~~~VR~~aA~~L-------~~-------~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 81 PLIRDSDEVVRRAVAYRL-------PR-------EQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------CS-------GGGGGTTTCSCHHHHHHHHH
T ss_pred HHccCcCHHHHHHHHHHC-------CH-------HHHHHHHcCCCHHHHHHHHH
Confidence 345666666666665431 11 22344455666666666554
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.32 E-value=0.0022 Score=71.07 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=117.1
Q ss_pred hHHHHHHhhcCCCCh--hhHHHHHHHHHHHHhhChhhHHh-hhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhcc-ch
Q 000201 695 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP 770 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w--~~r~~a~~~L~~l~~~~~~~~~~-~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~-~~ 770 (1866)
..+|.+++.|.+++. .++..|+..|..++...+..-.. .-...+|.|+++|...++++|..|+++|..++..-. +.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 357888888888877 78888888888888766432111 113677999999999999999999999999986321 11
Q ss_pred -hH--HhHHHHHHHhhC-CCChhHH-HHHHHHHhccccccCCcchhhhHHHHHHHhh-------c---------CCCHHH
Q 000201 771 -EI--ASLVPTLLMGLT-DPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL-------R---------ERSAET 829 (1866)
Q Consensus 771 -~i--~~lv~~L~~~l~-d~~~~vr-~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l-------~---------d~~~~v 829 (1866)
.+ ..-+|.|++.+. .++..++ .+...|......+.........-+|.|...+ . ..+.++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22 457899999887 4566666 3444444432222211222233355554432 1 136699
Q ss_pred HHHHHHHHHHHhhhcCC-Ccchhh---hHhhhhHHHHHHhcC--CCHhHHHHHHHHHHHHHhh
Q 000201 830 KKKAAQIVGNMCSLVTE-PKDMIP---YIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG 886 (1866)
Q Consensus 830 r~~a~~~l~~l~~~l~~-~~~l~~---~~~~ll~~L~~~l~d--~~~~vR~~a~~aL~~l~~~ 886 (1866)
+..|..++.+++..-.+ .+.+.. .++.++..+.....+ .+...++-++.+|..|...
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999862101 111211 123333333333322 3446677777777766543
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.14 E-value=0.21 Score=59.49 Aligned_cols=297 Identities=11% Similarity=0.070 Sum_probs=180.1
Q ss_pred cCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 000201 1477 SGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFI 1556 (1866)
Q Consensus 1477 ~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~ 1556 (1866)
.|+...|..|+..|..+.+..+ .....-+..++....+. +.+||..|+..|..+++. .+++.+..++.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP-----~l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~------~~i~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFP-----ELADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG------ENLPRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCG-----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT------TCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh------hhhhhHHHHHH
Confidence 4578899999999999887662 23344456677888774 788999999988877643 57899999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHH
Q 000201 1557 KCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKS-VSSAVKIRVYSVLKD 1635 (1866)
Q Consensus 1557 ~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~-l~~~~~~~i~~~L~~ 1635 (1866)
++|+..+..-+..+-.+|-.+...+| ...+..++..+..++..+|+.+++-|+.-+...+.. +.+..-.-|...+..
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK 184 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKK 184 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHH
Confidence 99998888888899999988876544 234555666665568899999999999888877655 454555556666666
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhc------cCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHH
Q 000201 1636 LVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNL------ASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLS 1709 (1866)
Q Consensus 1636 ~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~------~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~ 1709 (1866)
.+.+-...--.....+|+.+-..-......++++.+..+ ++..+...-...+.++...+-......-...+..-
T Consensus 185 ~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 185 VLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY 264 (507)
T ss_dssp HTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH
T ss_pred HhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 676555444444556665543222222233333333332 11112211122344555555554443322223222
Q ss_pred HHHHHHhhhcCCCh-----hHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCC-----------------H
Q 000201 1710 ILDRLKSSLKDEKF-----PLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDS-----------------S 1767 (1866)
Q Consensus 1710 ~~~~l~~~~~~~~~-----~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----------------~ 1767 (1866)
+..-+...++.=.. ..+---..+++.+..+++..+ .....+..+...+...+.-+. .
T Consensus 265 ~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e-~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~f 343 (507)
T 3u0r_A 265 FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDME-KLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQF 343 (507)
T ss_dssp HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHTTSCCCC--------------CCCH
T ss_pred HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccc-hHHHHHHHHHHHHHHHCCCCcccccccccccccCcccch
Confidence 33333333332111 245556777777777776321 112344445555554433222 2
Q ss_pred HHHHHHHHHHHHHHhhCcchh
Q 000201 1768 EVRRRALSALKSVAKANPSAI 1788 (1866)
Q Consensus 1768 ~vR~~a~~~l~~~a~~~~~~~ 1788 (1866)
..-...++++.++++..|+.+
T Consensus 344 S~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 344 SYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHHHHHTTCTHHH
T ss_pred hHHHHHHHHHHHHhhhChhhh
Confidence 234778899999999988655
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.01 E-value=0.0084 Score=64.72 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=125.0
Q ss_pred CChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcCh
Q 000201 1582 TRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMED 1661 (1866)
Q Consensus 1582 ~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~ 1661 (1866)
+....|+..+.+.+..-+.+.+. ..++...+..... .+.++.+......++.+.+|-.|+.+||.+ . +.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~gf~~-~~~~a~~~~~~~~-------~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~ 101 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHGFKE-EEQRALTDYKSND-------GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD 101 (240)
T ss_dssp -CHHHHHHHHHHHHTC-----CH-HHHHHHHHHHHSC-------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS
T ss_pred hHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhCC-------HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc
Confidence 45667777777766543322222 1223333333222 456666667777888899999999999988 3 22
Q ss_pred hHHHHHHHHHHh-ccCCCCcchhhhHHHHHHHHHh-hCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhh
Q 000201 1662 GQLADLLQELLN-LASSPSWAARHGSVLVFATFLR-HNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1662 ~~~~~~l~~ll~-~~~~~~~~~r~~~~~~L~~~l~-~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~ 1739 (1866)
. ..++.+.. ......|.++.....++...+. ..|+. .++.+..-+.|+++-+|+.|+.+.......
T Consensus 102 ~---~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~ 169 (240)
T 3l9t_A 102 K---EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---------ALPIIDEWLKSSNLHTRRAATEGLRIWTNR 169 (240)
T ss_dssp H---HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---------THHHHHHHHHCSSHHHHHHHHHHTCSGGGS
T ss_pred H---HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc
Confidence 2 33444444 3457789889888888888886 77653 346677888999999999999987542221
Q ss_pred hhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhhhHh
Q 000201 1740 QIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMVHVA 1793 (1866)
Q Consensus 1740 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~~l~ 1793 (1866)
|........+++.+....+|++.-||++....|+-+++.+|+.|+..+.
T Consensus 170 -----~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 170 -----PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp -----TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 1111244667777777888999999999999999999999998877664
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.41 E-value=0.031 Score=61.79 Aligned_cols=124 Identities=17% Similarity=0.087 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhcHh--hH--HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhh--
Q 000201 658 MLPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-- 729 (1866)
Q Consensus 658 llp~ll~~~~D~~~--~VR~~a~~al~~i~~~l~~~--~v--~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~-- 729 (1866)
.+|.+...+..+++ .++..++.++..++..-++. .+ ...+|.|++.|.+++..++..|+.+|..++...++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777776666 88888888888877543221 22 346899999999999999999999999999865543
Q ss_pred -HHhhhcchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccch--hHHhHHHHHHHhh
Q 000201 730 -LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGL 783 (1866)
Q Consensus 730 -~~~~l~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~~--~i~~lv~~L~~~l 783 (1866)
+.. ...+|.|+++|. ..+.++++.|+.+|..++..-.+. .++.-+|.|...+
T Consensus 89 ~I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 89 EVAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCC
T ss_pred HHHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHH
Confidence 222 367899999997 468999999999999987543332 2244567776544
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.15 E-value=3 Score=49.23 Aligned_cols=248 Identities=12% Similarity=0.096 Sum_probs=144.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 000201 1590 DLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQ 1669 (1866)
Q Consensus 1590 ~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~ 1669 (1866)
++++..+......+-..+.-+.+++-+-...+. ++++..+.+...+.+-.+|...++.|+..+....+ .+...++
T Consensus 29 ~lln~A~~~~~~~Kl~~L~q~~EL~l~~dpsLl----~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e-l~~~~l~ 103 (386)
T 3o2t_A 29 DLLNQAALITNDSKITVLKQVQELIINKDPTLL----DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE-LLLKLIA 103 (386)
T ss_dssp HHHHHHHHCCSTHHHHHHHHHHHHHHTTCGGGG----GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHhhhccChHHHHHHHHHHHHHHhccCHHHH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344443332234677888888887665444333 44455555555677888999999999888875442 3444444
Q ss_pred HHHhccCCCCcchhhhHHHHHHHHHhh-------CCCc-ccCCcchHH---HHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1670 ELLNLASSPSWAARHGSVLVFATFLRH-------NPSA-ISMSPLFLS---ILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1670 ~ll~~~~~~~~~~r~~~~~~L~~~l~~-------~p~~-~~~~~~~~~---~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
.+...+.+++..+...++.+...+++. .|.. ......|+. +-..+...+.+++..+|-.++.-+..++.
T Consensus 104 ~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 104 NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 443334445544444555555555432 2210 000134544 34556777888889999999988888776
Q ss_pred hhhhc--CC----------------CCh---------hhHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCcchhh
Q 000201 1739 HQIQS--GP----------------ANT---------TVVVDILASVVSALHD--DSSEVRRRALSALKSVAKANPSAIM 1789 (1866)
Q Consensus 1739 ~~~~~--~~----------------~~~---------~~~~~~l~~l~~~l~~--~~~~vR~~a~~~l~~~a~~~~~~~~ 1789 (1866)
.+... ++ .+. ..-..+|..++..+.+ -++-.-.+++..+..+++..|...
T Consensus 184 ~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~- 262 (386)
T 3o2t_A 184 TLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFM- 262 (386)
T ss_dssp HTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGH-
T ss_pred HhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHH-
Confidence 54321 11 011 1223456666666654 234444667788888888887643
Q ss_pred hhHhhHHHHHHhhh--------ccCcchhhhhHHHHHHHhhcccccchhHHHHHHHhhhhhhhhh
Q 000201 1790 VHVALFGPALAECL--------KDGSTPVRLAAERCAVHAFQLTRGSEYIQGAQKFITGLDARRL 1846 (1866)
Q Consensus 1790 ~~l~~l~p~l~~~~--------~~~~~~vk~aae~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1846 (1866)
..++|.+..-. +-....|+...-..+.+++|-+...+..+.+..+|..+-+++-
T Consensus 263 ---~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~~Lg~s~~ 324 (386)
T 3o2t_A 263 ---SEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQA 324 (386)
T ss_dssp ---HHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHHTTCCHH
T ss_pred ---HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHcccHH
Confidence 44444444321 1112336677778899999988776677788888755555444
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.37 E-value=1.1 Score=47.15 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHhCcC
Q 000201 572 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-ADRNSAKRREGALLAFECLCEKLGRL 650 (1866)
Q Consensus 572 ~~~~l~~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i-~~~~~~~~r~~al~al~~L~~~l~~~ 650 (1866)
...+++.+.+.+.. ..|+.|...|. ...|...+- ..++.++.+.+ .+-+|...-...+.....|.....=.
T Consensus 9 lq~yf~~It~a~~~----~~r~~aL~sL~---~D~gL~~Ll-Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 9 LQLYFDKILSMIKS----DMKDIAIECLE---KESGLQQLV-PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHHHHHTS----TTHHHHHHHHH---HCSSCTTTH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHh----HHHHHHHHHHh---cCCChhhhH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 44555555555554 34665555543 444544432 12333444333 33345555555666677777777667
Q ss_pred chhcHHhHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhhcH--hhH-HhHHHHHHhhcCC--CChhhHHHHHHHHHHH
Q 000201 651 FEPYVIQMLPLLLVAFSDQ---VVAVREAAECAARAMMSQLSA--QGV-KLVLPSLLKGLED--KAWRTKQSSVQLLGAM 722 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~---~~~VR~~a~~al~~i~~~l~~--~~v-~~llp~L~~~L~~--~~w~~r~~a~~~L~~l 722 (1866)
++||+.+++|.++.|+-.. ...+|+-|+..+..|+...+. .++ +.+...+.+.+.| .+..+.+||+..|.++
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 8999999999999886322 228999999999999998765 233 6778888887765 4689999999998887
Q ss_pred Hh
Q 000201 723 AY 724 (1866)
Q Consensus 723 ~~ 724 (1866)
..
T Consensus 161 G~ 162 (196)
T 4atg_A 161 SK 162 (196)
T ss_dssp CH
T ss_pred HH
Confidence 75
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.31 E-value=12 Score=44.80 Aligned_cols=262 Identities=12% Similarity=0.084 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChh
Q 000201 1522 PWQVKSAILSTLSIIIRKGGIALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAG 1601 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~ 1601 (1866)
+...|..|-+.+....+..|. .-.+-+...+..+.|.+..||..|.+.|..++.- ..+..+..-|.+.+++.++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhccchH
Confidence 678899999988887765543 3345667788888999999999999999999765 66778888888888887777
Q ss_pred HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChh----HHHHHHHHHH-hccC
Q 000201 1602 IREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDG----QLADLLQELL-NLAS 1676 (1866)
Q Consensus 1602 vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~----~~~~~l~~ll-~~~~ 1676 (1866)
-...+-++|..++..-.. ..+..++..+. ..++.+|..+...|..-...++.+ ++..++...+ +.+.
T Consensus 116 E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~----~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~ 187 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAK----GTLGGLFSQIL----QGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE 187 (507)
T ss_dssp HHHHHHHHHHHHHHHCHH----HHHHHHHHHHH----HSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcChH----HHHHHHHHHHc----ccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhc
Confidence 777777788888764322 23333333333 347888888777776544444433 2333333222 2222
Q ss_pred CCCcchhhhHHHHHHHHHhhCCCcccC-CcchHHHHHHHHhhhc------CCChhHHHHHHHHhHHHHhhhhhcCCCChh
Q 000201 1677 SPSWAARHGSVLVFATFLRHNPSAISM-SPLFLSILDRLKSSLK------DEKFPLREASTKALGRLLLHQIQSGPANTT 1749 (1866)
Q Consensus 1677 ~~~~~~r~~~~~~L~~~l~~~p~~~~~-~~~~~~~~~~l~~~~~------~~~~~~r~~a~~alg~ll~~~~~~~~~~~~ 1749 (1866)
+.+ .-. ...+..+++... +.. .....++++++..... ..++..-+--+.|+...+.+.... ..+.+
T Consensus 188 DVT--~~E--F~L~m~lL~~lk--l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~-v~Stk 260 (507)
T 3u0r_A 188 DVT--GEE--FVLFMKILSGLK--SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKN-VHSTR 260 (507)
T ss_dssp SCC--HHH--HHHHHHHHHTSG--GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTT-BCCHH
T ss_pred ccc--HHH--HHHHHHHHHhcc--cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccC-CChHH
Confidence 222 111 112334443321 111 1234566776665422 234455555566666665554332 33445
Q ss_pred hHHHHHHHHHhhcCCCCH-----HHHHHHHHHHHHHHhhCcchhhhhHhhHHHHHHhhhcc
Q 000201 1750 VVVDILASVVSALHDDSS-----EVRRRALSALKSVAKANPSAIMVHVALFGPALAECLKD 1805 (1866)
Q Consensus 1750 ~~~~~l~~l~~~l~~~~~-----~vR~~a~~~l~~~a~~~~~~~~~~l~~l~p~l~~~~~~ 1805 (1866)
++.-+...++..+++=.. +.|---+.++--++.++.+ .+.....+|.+|.....
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~--~e~a~~~l~~iy~~L~~ 319 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGD--MEKLETNLRKLFDKLLE 319 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCC--CTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCc--cchHHHHHHHHHHHHHH
Confidence 555555566655543211 2455455555555555542 22334556666655543
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.03 E-value=2.1 Score=45.12 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCC---CHhHHHHHHHHHHHHHhhcCCCC---hhhHHHHH
Q 000201 826 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWL 899 (1866)
Q Consensus 826 ~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~---~~~vR~~a~~aL~~l~~~~g~~~---~~~l~~~L 899 (1866)
+...-....++...+.. +..-.+.||+.+++|.+..++-.. ...+|+.|+..++.++...|..+ -+.+...+
T Consensus 59 ~l~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence 34444445556666655 344578899999999999987532 22799999999999999998753 23445555
Q ss_pred HHhcccC-CCHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHH
Q 000201 900 LDALKSD-NSNVERSGAAQGLSEVLAALGTVYFEHIL-PDIIRN 941 (1866)
Q Consensus 900 ~~~L~~~-~~~~~R~~a~~~L~~l~~~~g~~~l~~ll-~~l~~~ 941 (1866)
...+.++ .+....-||+.+|+. +|.+....++ |.+...
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~~~ 176 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAEEY 176 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHHHH
Confidence 5555443 455566688777754 5666555443 555443
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.71 E-value=1.5 Score=60.19 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhc-------HhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHH
Q 000201 669 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 741 (1866)
Q Consensus 669 ~~~~VR~~a~~al~~i~~~l~-------~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l 741 (1866)
.++.+|+++.-+++.++.... .+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 467889999888887776432 23356677777777777778888899999998876 2333444
Q ss_pred hhhcc-------CCChHHHHHHHHHHHHHHhhccchhHHhHHHHHHHhhCCCC--hhHH-HHHHHHHhccccccCCcchh
Q 000201 742 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSL 811 (1866)
Q Consensus 742 ~~~L~-------D~~~~VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l~d~~--~~vr-~al~~L~~~~~~~~~~~~~l 811 (1866)
.+++. +...+||.+|++||..+.... | ..+-+.+++...|.. ..+| .|+..|..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--P--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--H--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhc--h--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 44442 224689999999999997532 2 223344555554443 3567 566666542 2333
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 812 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 812 ~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
..+..+....-.+.+..|+......+.+++.
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3333444444456778888777777777766
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.52 E-value=19 Score=42.44 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=65.8
Q ss_pred HHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHH
Q 000201 1328 QSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTV 1407 (1866)
Q Consensus 1328 r~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~ 1407 (1866)
+-..+.-+..++..-+..-++.+++.++....+.+..+|...+.++...|... .++.+.++..|..+++|.++.|.
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHH
Confidence 33333344444443345567888999998888888999999999999888642 34567888899999999999999
Q ss_pred HHHHHHHHHHH
Q 000201 1408 AAAWEALSRVV 1418 (1866)
Q Consensus 1408 ~~A~~aL~~l~ 1418 (1866)
..+..|.+.+.
T Consensus 118 K~~I~~~tslY 128 (386)
T 3o2t_A 118 KKAILTMTQLY 128 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887764
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.14 E-value=26 Score=38.84 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChH
Q 000201 672 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 751 (1866)
Q Consensus 672 ~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~ 751 (1866)
..+-....-+..++-.-.+.-++.+++.+++.-.+++-.+|+-.+.+|...+...+ ...+.+++.+..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHH
Confidence 34444444444443333445557888888887677888889988888887775443 34456777788888999999
Q ss_pred HHHHHHHHHHHHHhhccchhHHhHHHHHHHhh-CCCC--hhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHH
Q 000201 752 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 828 (1866)
Q Consensus 752 VR~aA~~aL~~l~~~i~~~~i~~lv~~L~~~l-~d~~--~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~ 828 (1866)
|.+.+..|...+-.. .++.+ .+++ +....+.+.+ ..+-..+.+.+...+..
T Consensus 106 V~K~~I~~~~~iY~~------------~l~~i~~~~~~~~~~~~~W~~m--------------~~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYKN------------GLQYLCSLMEPGDSAEQAWNIL--------------SLIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHTTSSSCCHHHHHHHHHH--------------HHHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHHH------------HHHHHhcCCCCcchHHHHHHHH--------------HHHHHHHHHHHccCCcc
Confidence 998888887766432 11111 2222 1122222222 22344455556667788
Q ss_pred HHHHHHHHHHHHhh
Q 000201 829 TKKKAAQIVGNMCS 842 (1866)
Q Consensus 829 vr~~a~~~l~~l~~ 842 (1866)
+|..+.+.+..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888877664
No 119
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=90.11 E-value=15 Score=48.27 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=151.6
Q ss_pred ccccHHHHHHhhccCCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcC
Q 000201 1464 LQPLLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGD--RFPWQVKSAILSTLSIIIRKGG 1541 (1866)
Q Consensus 1464 l~~ilp~l~~~L~~~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~--~~~~~vr~~al~~L~~L~~~~~ 1541 (1866)
+..++|+...|+-+.+......+..++..++.-. +.+..-.++.++.-+...+.. -.+..-..+++.+|..+++-+-
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 3457888888998999988888999999998765 311111223333333444544 3345566788888887776542
Q ss_pred --CCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------c---CC---------------------------
Q 000201 1542 --IALKPFLPQLQTTFIKCLQDSTRTVRSSAALALGKLSAL------S---TR--------------------------- 1583 (1866)
Q Consensus 1542 --~~~~~~lp~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~------~---~~--------------------------- 1583 (1866)
..+++++..++..++..++-.+..--..+...+..+... . ..
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 346778888888888888766776666777777666331 0 00
Q ss_pred ---------------------hhhHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC
Q 000201 1584 ---------------------VDPLVGDLLSSLQV-SDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD 1641 (1866)
Q Consensus 1584 ---------------------~~~~l~~L~~~l~~-~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~ 1641 (1866)
+..++..++..+++ .+..+......++..++.++ +++..+.++..+.+.+.++.
T Consensus 496 ~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~l----S~~if~~~l~k~~~fv~~n~ 571 (799)
T 1vsy_4 496 RVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESM----DDKIFNYFASLLNRNFWSND 571 (799)
T ss_dssp CCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTB----CHHHHHHHHHHHHHHHHSCS
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHhh
Confidence 11233344444442 33344444444444444444 44444555554444333321
Q ss_pred -HHHHHHHHHH----HHHHHhhcChhHHHHHHHHHHh-------cc-----CC-C---CcchhhhHHHHHHHHHhhCCCc
Q 000201 1642 -DHVRVSAASI----LGIMSQCMEDGQLADLLQELLN-------LA-----SS-P---SWAARHGSVLVFATFLRHNPSA 1700 (1866)
Q Consensus 1642 -~~vr~~aa~~----l~~L~~~~~~~~~~~~l~~ll~-------~~-----~~-~---~~~~r~~~~~~L~~~l~~~p~~ 1700 (1866)
.......+.+ ++.+++..|. .+..+++.+.. .. .. + ....-.+.+..|..++..++..
T Consensus 572 ~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~ 650 (799)
T 1vsy_4 572 SFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHES 650 (799)
T ss_dssp CCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGG
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHH
Confidence 1223334444 6777777787 66655555432 11 11 0 1123355667888999998887
Q ss_pred ccCCcchHHHHHHHHhhhc-CCChhHHHHHHHHhHHHHhh
Q 000201 1701 ISMSPLFLSILDRLKSSLK-DEKFPLREASTKALGRLLLH 1739 (1866)
Q Consensus 1701 ~~~~~~~~~~~~~l~~~~~-~~~~~~r~~a~~alg~ll~~ 1739 (1866)
++ ++.+++...+..... ..+..+-..+..-+..++..
T Consensus 651 lL--~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 651 LL--EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp GG--TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred HH--ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 76 467777777766653 33444334344444444443
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=89.56 E-value=20 Score=47.03 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=146.5
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccC---CChHHHHHHHHHHHHHHhhccc
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---THPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D---~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
|+.++|.++.++.+++-.+...+..+|..++.-.|......+|.++..+...|.. .++.=-.++.++|..++..+..
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~ 416 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVM 416 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTT
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 4667888888888888888888889999999988733333445666666666655 4455455677888777755443
Q ss_pred -h----hHHhHHHHHHHhhCCCChhHH--HHHHHHHhccccccCC-c----chh---hhHHHHHHHhh---c--------
Q 000201 770 -P----EIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVD-A----PSL---ALLVPIVHRGL---R-------- 823 (1866)
Q Consensus 770 -~----~i~~lv~~L~~~l~d~~~~vr--~al~~L~~~~~~~~~~-~----~~l---~~l~p~L~~~l---~-------- 823 (1866)
+ .+..++..++..+ |+++--+ .++..+......-.+. . ..+ ....|.+...+ +
T Consensus 417 ~~~yr~hl~~lL~l~LpgI-D~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 417 DKLYRVHITNVLSMLVSKL-DMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp STTGGGHHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred CcccHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 2 2233333333333 5554322 3444444333321111 0 010 01111111111 0
Q ss_pred --CCCHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcC-CCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 000201 824 --ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLL 900 (1866)
Q Consensus 824 --d~~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d-~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~ 900 (1866)
|...+.+ . ++.. + ..+..++..++..+..++.. ....+-.....++..+...+.++.+..++..+.
T Consensus 496 ~~d~~~~~~-----~---~~~s-T--~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 496 RVDDELLNN-----A---FKAS-T--TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLN 564 (799)
T ss_dssp CCCTTHHHH-----H---HHHH-T--STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHH
T ss_pred cccHHHHHH-----H---HHHH-H--hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111100 0 1110 1 12344455556666666653 333343455667777777888887777777777
Q ss_pred HhcccCCCHHHHHHHHHH----HHHHHHHhChhHHHHHHHHHHHHhcc----C------ChhH--Hh----HHHHHHHHh
Q 000201 901 DALKSDNSNVERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------RASV--RD----GYLTLFKYL 960 (1866)
Q Consensus 901 ~~L~~~~~~~~R~~a~~~----L~~l~~~~g~~~l~~ll~~l~~~l~~----~------~~~v--R~----~al~~l~~L 960 (1866)
+.+.+............- +..+++.-+. .++.++|.+...+.. . ..++ ++ -.+.+++.+
T Consensus 565 ~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~ 643 (799)
T 1vsy_4 565 RNFWSNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDV 643 (799)
T ss_dssp HHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHH
Confidence 655432211011111111 3444555455 677777777644321 1 1111 22 346677788
Q ss_pred hhhhchhhHhHHHHHHHHHHhhc
Q 000201 961 PRSLGVQFQNYLQQVLPAILDGL 983 (1866)
Q Consensus 961 ~~~~g~~f~~~l~~il~~ll~~l 983 (1866)
....|..+-+|-++++..+...+
T Consensus 644 v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 644 LRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HhcCcHHHHccHHHHHHHHHHHH
Confidence 88888888889888887666555
No 121
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.71 E-value=33 Score=38.03 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhHhhhccchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChh
Q 000201 1326 DVQSLAKEAAETVTLVIDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDST 1405 (1866)
Q Consensus 1326 ~vr~~a~~~l~~l~~~~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~ 1405 (1866)
+.+-..+.-...++..-++..++.+++.++....+.+..+|...+.++...|... ..+.+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHH
Confidence 3444444455554444455678999999999888888999999999998888543 356788899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 000201 1406 TVAAAWEALSRVVA 1419 (1866)
Q Consensus 1406 v~~~A~~aL~~l~~ 1419 (1866)
|...+..+.+.+..
T Consensus 106 V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 106 VIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887754
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.51 E-value=1.1e+02 Score=42.06 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhhCcchhhhcchHHHHHHHHhC---CCcHHHHHHHHHHHHHHHHHhCcC----chhcHHhHHHHHHHHcC
Q 000201 595 AAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRL----FEPYVIQMLPLLLVAFS 667 (1866)
Q Consensus 595 A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~---~~~~~~r~~al~al~~L~~~l~~~----~~p~v~~llp~ll~~~~ 667 (1866)
|++.|.......-+ ..+++..+...+.. .+++..|+.++.+++.+....-.. -..++..+...+...+.
T Consensus 375 a~~~l~~~~~~~~P----t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~ 450 (1056)
T 1lsh_A 375 ATQIVASTLSNQQA----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD 450 (1056)
T ss_dssp HHHHHHHHHHTCCC----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCC----CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh
Confidence 66666654432211 12345555555543 245678889999999998764211 12345556666666666
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCC-------CChhhHHHHHHHHHHHHhhChhhHHhhhcchhHH
Q 000201 668 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-------KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 740 (1866)
Q Consensus 668 D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~-------~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~ 740 (1866)
..+..-+..+..+|+.+.. +..++.+...+.. ..-++|..|+.+|..++...|+... +.
T Consensus 451 ~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~-------~i 516 (1056)
T 1lsh_A 451 RAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ-------EI 516 (1056)
T ss_dssp TTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH-------HH
T ss_pred cCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH-------HH
Confidence 6666666666777776643 2345555555532 2358899999999988876555433 33
Q ss_pred Hhhhc--cCCChHHHHHHHHHHH
Q 000201 741 LTEVL--TDTHPKVQSAGQTALQ 761 (1866)
Q Consensus 741 l~~~L--~D~~~~VR~aA~~aL~ 761 (1866)
+++.. .+.+++||.+|+..|-
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHH
Confidence 44555 4567999999998774
No 123
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.69 E-value=60 Score=38.32 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhhhhhhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH--HHHHhcCCCCCCchHHHHHHH
Q 000201 1478 GSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLS--IIIRKGGIALKPFLPQLQTTF 1555 (1866)
Q Consensus 1478 ~~~~~r~~a~~~L~~l~~~~~~~~l~~~v~~i~~~Li~~l~~~~~~~vr~~al~~L~--~L~~~~~~~~~~~lp~L~~~l 1555 (1866)
+++.-...-..-+.+++...++..+......++..+.+.+.+. +.+|-..|+.... .++.-+.......+|-+.+.+
T Consensus 263 tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L 341 (403)
T 3fga_B 263 THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 341 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 3443333445668888888877888877777777777777764 6777777776543 122222222222345555555
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhccCC
Q 000201 1556 IKCLQDS-TRTVRSSAALALGKLSALSTR 1583 (1866)
Q Consensus 1556 ~~~l~d~-~~~vR~~Aa~aLg~L~~~~~~ 1583 (1866)
.+..... +..||..+..++..++.+.+.
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 5554444 899999999999988776554
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=82.24 E-value=76 Score=36.28 Aligned_cols=193 Identities=20% Similarity=0.227 Sum_probs=105.9
Q ss_pred hhhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhc-CCC-----C---hhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q 000201 855 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEE-----N---FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 925 (1866)
Q Consensus 855 ~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~-g~~-----~---~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~ 925 (1866)
..++..|...+..-..+.|+.+...++.+.+.- |.. | -++++..|+....+.+. +-..|.+.+.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di-------Al~~G~mLRe 149 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI-------ALNCGIMLRE 149 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT-------HHHHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh-------HhHHHHHHHH
Confidence 346677777777778999999999998888743 322 1 24566666665543321 1222333332
Q ss_pred hC-hhHH------HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 000201 926 LG-TVYF------EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 998 (1866)
Q Consensus 926 ~g-~~~l------~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~ll~~l~d~~~~VR~~a~~al 998 (1866)
+- .+.+ .+.+-.+.+..+.++.++-..|+..|..+-..-..-...|+.
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~------------------------- 204 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLE------------------------- 204 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHH-------------------------
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHH-------------------------
Confidence 21 1111 112223444555555555544444444332211110000100
Q ss_pred HHHHHhhcccchhchHHhHhcccCCCchHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCcchHHHHHHHHHHhchhh
Q 000201 999 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1078 (1866)
Q Consensus 999 ~~i~~~~~~~~i~~llp~l~~~l~d~~w~vR~~s~~ll~~ll~~~~~~~~~~~~~~~~ed~~~~~e~~~~~l~~~lg~~~ 1078 (1866)
.+ .+.+...+...+..+|+-.|+.|++++|+++-.-+. ...+...++.
T Consensus 205 ----~n-----yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N---------------------~~vM~~Yis~-- 252 (341)
T 1upk_A 205 ----QH-----YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN---------------------FTIMTKYISK-- 252 (341)
T ss_dssp ----HT-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG---------------------HHHHHHHTTC--
T ss_pred ----Hh-----HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH---------------------HHHHHHHhCC--
Confidence 01 122334445567788999999999999999743111 0112222221
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcC
Q 000201 1079 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1112 (1866)
Q Consensus 1079 ~~~vl~~L~~~~~D~~~~vR~~A~~~l~~l~~~~ 1112 (1866)
.+.+..++..+.|.+..++-.|.++.+-++.|.
T Consensus 253 -~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 253 -PENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp -HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred -HHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 234555556689999999999999999999763
No 125
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=80.39 E-value=16 Score=39.82 Aligned_cols=139 Identities=7% Similarity=0.008 Sum_probs=88.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCcCchhcHHh
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 657 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~al~al~~L~~~l~~~~~p~v~~ 657 (1866)
.++..|..++..+.|..|+.-+....+... .+-++.+...+...++|........+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 455666666666677766666654332221 123445556666677887766544444444332 2224
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHh
Q 000201 658 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 732 (1866)
Q Consensus 658 llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~ 732 (1866)
+.+.+.....+++.-+|+.|..++ +..........+++.+...+.|+++-+|++....|..++...|+.+..
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 566778888999999999887654 222222234566776666888999999999999999988887776544
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=77.56 E-value=1.2e+02 Score=35.80 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=121.8
Q ss_pred CCChhhHHHHHHHHHHHHhhC---hhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH-HhHHHH
Q 000201 706 DKAWRTKQSSVQLLGAMAYCA---PQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVPT 778 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~~---~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i-~~lv~~ 778 (1866)
+++|..-...-++|..+..+. +.....+++ ..+-.++.++...+|+=|......|.++-..+.. +.+ ..+-..
T Consensus 95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni 174 (403)
T 3fga_B 95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 174 (403)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 556776666666666665541 222223333 3566788899999999999999988876543321 223 222233
Q ss_pred HHHhhCCCCh--hHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCC-HHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 779 LLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS-AETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 779 L~~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~-~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
+.+.+..... .+.+.++ ++-.+.+++.-+- .+-+..-..++--+ -.++.+..|.+
T Consensus 175 f~~fiye~e~~~GIaeLLe------------------ilgsIinGfa~PLkeehk~fl~~vLlPL----Hk~~~~~~y~~ 232 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLE------------------ILGSIINGFALPLKEEHKIFLLKVLLPL----HKVKSLSVYHP 232 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHH------------------HHHHHHHHCCSSCCHHHHHHHHHTTTGG----GGSTTGGGTHH
T ss_pred HHHHhcCcccCCCHHHHHH------------------HHHHHHcccCCCchHHHHHHHHHHHHHH----HcCCcchhhHH
Confidence 3333322211 1112222 2222223332211 12121111111111 12234445555
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHHH--
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH-- 933 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~~-- 933 (1866)
++...+.+.+.. ++. ....++..++..--... ..-..--+.-+.+++...+...+..
T Consensus 233 qL~ycv~qf~eK-Dp~-------------------L~~~vi~~LLk~WP~tn-s~KevlFL~Ele~iLe~~~~~~f~~i~ 291 (403)
T 3fga_B 233 QLAYCVVQFLEK-DST-------------------LTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFVKIM 291 (403)
T ss_dssp HHHHHHHHHHHH-CGG-------------------GHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-Cch-------------------hHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 555555544431 122 22233333433222111 1111122344566666666665544
Q ss_pred --HHHHHHHHhccCChhHHhHHHHHHH--HhhhhhchhhHhHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHHHH
Q 000201 934 --ILPDIIRNCSHQRASVRDGYLTLFK--YLPRSLGVQFQNYLQQVLPAILDG-LADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 934 --ll~~l~~~l~~~~~~vR~~al~~l~--~L~~~~g~~f~~~l~~il~~ll~~-l~d~~~~VR~~a~~al~~i~~ 1003 (1866)
++..+...+.+++..|-+.|+..|. ++...+...-...++.++|.+.+. -.+=+..||..+..++..+.+
T Consensus 292 ~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 292 EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4445556678889999888887764 222222221122333444444443 235578888888887777654
No 127
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=76.59 E-value=2.4e+02 Score=38.77 Aligned_cols=82 Identities=9% Similarity=0.022 Sum_probs=66.4
Q ss_pred chhcHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH
Q 000201 651 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 730 (1866)
Q Consensus 651 ~~p~v~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~ 730 (1866)
++.|+..++...-.++...++.||+-+......++..+..+.-..++..|+....+.+-..-..|+.+|..++...++.+
T Consensus 394 L~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l 473 (1323)
T 3s4w_B 394 LKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAM 473 (1323)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHH
Confidence 56788888888888888999999999999999999988765557788888887776666666678999999888777765
Q ss_pred Hh
Q 000201 731 SQ 732 (1866)
Q Consensus 731 ~~ 732 (1866)
..
T Consensus 474 ~~ 475 (1323)
T 3s4w_B 474 RL 475 (1323)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 128
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=76.55 E-value=27 Score=38.28 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=89.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhh-HHHHHHHHHhhCCCcccCCcchHHH
Q 000201 1632 VLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHG-SVLVFATFLRHNPSAISMSPLFLSI 1710 (1866)
Q Consensus 1632 ~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~-~~~~L~~~l~~~p~~~~~~~~~~~~ 1710 (1866)
.+.....++..+.|-.+..++........++.+. .+..++.. -..|...-. +..++..+++..|...
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~-~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~~~--------- 132 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETHIP-FLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPELI--------- 132 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHH-HHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGGGG---------
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHHHH---------
Confidence 3444445566678888887777554444443332 34444442 344543221 1234456666666522
Q ss_pred HHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhh
Q 000201 1711 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 1790 (1866)
Q Consensus 1711 ~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~ 1790 (1866)
.+.+..-+.|+++.+|+.|+.++ +.+.... ....++..+...+.|++.=||.+...+|+.++..+|+.+.+
T Consensus 133 ~~~l~~W~~s~~~w~rR~ai~~~---l~~~~~~------d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 133 SAYIPKWIASDNIWLQRAAILFQ---LKYKQKM------DEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGTHHHHHHSSCHHHHHHHHHTT---TTCGGGC------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHH---HHHHhCC------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34566778899999999987654 3332221 22345555666788999999999999999999999999888
Q ss_pred hHh
Q 000201 1791 HVA 1793 (1866)
Q Consensus 1791 ~l~ 1793 (1866)
++.
T Consensus 204 fl~ 206 (232)
T 3jxy_A 204 YVQ 206 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=76.19 E-value=23 Score=35.63 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=57.1
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhccC------CChHHHHHHHHHHHHHHh
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~D------~~~~VR~aA~~aL~~l~~ 765 (1866)
+..+..+...+.+.+..+..-|+.+|..+.++|+..+...+ ..++..|.+++.+ +++.||..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 44555566677888999999999999999999987653322 2455566666654 578999999999998887
Q ss_pred hccc
Q 000201 766 VIKN 769 (1866)
Q Consensus 766 ~i~~ 769 (1866)
.+.+
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7753
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.16 E-value=14 Score=36.76 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=55.6
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhccCCChHHHHHHHHHHHHHHhhccc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+..+..+.+.|.+.+..+..-|+.+|..++++|+..+...+ ..++..+.++++..++.|+..+...+...+..+.+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 44445555666788888999999999999999987654322 24455555566667899999999999888876653
No 131
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.75 E-value=24 Score=38.39 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHH
Q 000201 1631 SVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSI 1710 (1866)
Q Consensus 1631 ~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~ 1710 (1866)
.++.....++.-+.|..+..+++.......++.+ ..++.++.. -..|..--..+.++..++...|. .+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l-~~~~~~l~~--~~nWd~~D~~a~~~~~~~~~~~~---------~~ 125 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEEV-VAFKAYVPQ--KAWWDSVDAWRKFFGSWVALHLT---------EL 125 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHH-HHGGGGTTT--TCSHHHHHHHHHHHHHHHHHSGG---------GH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHHH-HHHHHHhcc--CCcHHHHHHHHHHHHHHHHHChH---------HH
Confidence 4555555556677888888888876544443222 233333322 33443332212234455555443 34
Q ss_pred HHHHHhhhcCCChhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcchhhh
Q 000201 1711 LDRLKSSLKDEKFPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPSAIMV 1790 (1866)
Q Consensus 1711 ~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~~~~~ 1790 (1866)
.+.+..-+.|++.-+|+.|+.+. +.+ ... .....++..+...++|++.=||++...+|+.++..+|+.+.+
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~---l~~-~~~-----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~ 196 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQ---LML-KEK-----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEE 196 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTT---TTC-GGG-----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH---HHH-HHC-----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 56778889999999999987754 333 222 133556666666889999999999999999999999998877
Q ss_pred hH
Q 000201 1791 HV 1792 (1866)
Q Consensus 1791 ~l 1792 (1866)
++
T Consensus 197 fl 198 (220)
T 2b6c_A 197 LM 198 (220)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=74.25 E-value=1.2e+02 Score=36.54 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=119.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhc--Ch
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCM--ED 1661 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~l~~L~~~~--~~ 1661 (1866)
.++..|+..+.++|+.-|...-..|..+-.+... .-.-.+..+-+.+...+.+.+ .++ ....+++|.+..-. |-
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGI-aeLLeilgSIinGfa~PL 239 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGI-AELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCH-HHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCH-HHHHHHHHHHHhccCCCC
Confidence 3667777777777777776666666665554322 111223344344444332221 222 12345555655432 21
Q ss_pred -hHHHHHHHH-HHhccCCCCcchhh-hHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1662 -GQLADLLQE-LLNLASSPSWAARH-GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1662 -~~~~~~l~~-ll~~~~~~~~~~r~-~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
++...++.. ++..........-+ ....++..++...|. +...++..+.++.=-.++.---.-+.=+..++.
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~------L~~~vi~~LLk~WP~tns~KevlFL~eleeile 313 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST------LTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG------GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH------hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 223333333 44443333332222 233456666666543 456677777766544333222223333344443
Q ss_pred hhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----HHHhhCcchhhhhHhhHHHHHHhhhccC-cchhhh
Q 000201 1739 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALK-----SVAKANPSAIMVHVALFGPALAECLKDG-STPVRL 1812 (1866)
Q Consensus 1739 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~-----~~a~~~~~~~~~~l~~l~p~l~~~~~~~-~~~vk~ 1812 (1866)
..... +..+...+++..+..++++++..|=..|+...+ .+...+. ...++.+.|+|++..+.. |..||.
T Consensus 314 ~~~~~--ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~---~~IlPii~p~L~~~s~~HWn~~V~~ 388 (449)
T 2npp_B 314 VIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNA---AKILPIMFPSLYRNSKTHWNKTIHG 388 (449)
T ss_dssp TCCHH--HHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTH---HHHHHHHHHHHTSCTTCCSSTTHHH
T ss_pred hCCHH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhch---hhhHHhhHHHHHHHHHHhcCHHHHH
Confidence 33221 122455678888888999999999888885543 1111121 123455666776665543 789999
Q ss_pred hHHHHHHHhhccc
Q 000201 1813 AAERCAVHAFQLT 1825 (1866)
Q Consensus 1813 aae~a~~~l~~~~ 1825 (1866)
.+.+++-.+.++-
T Consensus 389 la~~vlk~l~e~d 401 (449)
T 2npp_B 389 LIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC
Confidence 9999998777664
No 133
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=73.56 E-value=61 Score=36.97 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=83.8
Q ss_pred HHHHH-HHHHHHHHHHHHhCcCchhcHHhHHHHHHHH----cC---CCCHHHHHHHHHHHHHHHH-------hhcHhhHH
Q 000201 630 AKRRE-GALLAFECLCEKLGRLFEPYVIQMLPLLLVA----FS---DQVVAVREAAECAARAMMS-------QLSAQGVK 694 (1866)
Q Consensus 630 ~~~r~-~al~al~~L~~~l~~~~~p~v~~llp~ll~~----~~---D~~~~VR~~a~~al~~i~~-------~l~~~~v~ 694 (1866)
+..|+ ..+.++..+...++..+.|++..++..+..+ .+ ++.|+.|..=-..++.+.. .+++..++
T Consensus 87 p~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fk 166 (321)
T 1w9c_A 87 PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166 (321)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 34444 4677888899999999999988877766543 34 3678888887777766664 35677788
Q ss_pred hHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh--h-----HHhhhcchhHHHhhhccCCC
Q 000201 695 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ--Q-----LSQCLPKIVPKLTEVLTDTH 749 (1866)
Q Consensus 695 ~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~--~-----~~~~l~~iv~~l~~~L~D~~ 749 (1866)
.++..++=+.++....+-..++..+..+.....+ + ...++-.++.-++.++.|+.
T Consensus 167 lvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 167 LVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 8899888888999988888888887776665421 1 12234455555556666653
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=72.98 E-value=33 Score=34.46 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=57.6
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhccC------CChHHHHHHHHHHHHHHh
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD------THPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~D------~~~~VR~aA~~aL~~l~~ 765 (1866)
+..+..+...|.+.+..+..-|+.+|..+.++|+..+...+ ..++..+.+++.+ .++.||..+...+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555566677888999999999999999999987654332 2566666767654 478999999999988887
Q ss_pred hccc
Q 000201 766 VIKN 769 (1866)
Q Consensus 766 ~i~~ 769 (1866)
.+.+
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 6653
No 135
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.41 E-value=22 Score=36.46 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=55.1
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc--chhHHHhhhccC-CChHHHHHHHHHHHHHHhhcc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~~l~~~L~D-~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
+..+..+.+.|.+.+..+..-|+.+|..+.++|+..+...+. .++..+.+++.. .++.|+..+...+...+..+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 455556666778888999999999999999999876553322 344555555544 678999999988888877665
No 136
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=69.80 E-value=54 Score=37.40 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHhcccC---CCHHHHH-HHHHHHHHHHHHhChh---HHHHHHHHH---
Q 000201 871 EVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSD---NSNVERS-GAAQGLSEVLAALGTV---YFEHILPDI--- 938 (1866)
Q Consensus 871 ~vR~~a~~aL~~l~~~~g~~--~~~~l~~~L~~~L~~~---~~~~~R~-~a~~~L~~l~~~~g~~---~l~~ll~~l--- 938 (1866)
.+|+...+.+...++...+. ....++|.|++.+-.+ ..+..|. .+...++.++..+|.. .+..++..+
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~ 123 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 123 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46666777777777654432 2244555555433211 1111222 4556667777777643 222222222
Q ss_pred -HHHhc---cCChhHHhHHHHHHHHhhhhhchhhH----hHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhhc
Q 000201 939 -IRNCS---HQRASVRDGYLTLFKYLPRSLGVQFQ----NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1006 (1866)
Q Consensus 939 -~~~l~---~~~~~vR~~al~~l~~L~~~~g~~f~----~~l~~il~~ll~~l~d~~~~VR~~a~~al~~i~~~~~ 1006 (1866)
++..+ ..-|+.|...+.++..+...+-..|- +.+..++..++-+.++++.+|.+.+++.+..++++++
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 23333 24799999999999998877655432 3456678888888999999999999999888887764
No 137
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=69.34 E-value=2e+02 Score=34.59 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=121.6
Q ss_pred CCChhhHHHHHHHHHHHHhh--C-hhhHHhhhc-chhHHHhhhccCCChHHHHHHHHHHHHHHhhccc--hhH-HhHHHH
Q 000201 706 DKAWRTKQSSVQLLGAMAYC--A-PQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI-ASLVPT 778 (1866)
Q Consensus 706 ~~~w~~r~~a~~~L~~l~~~--~-~~~~~~~l~-~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~--~~i-~~lv~~ 778 (1866)
+++|..-.-.-++|..+... . +.....+++ ..+-.|+.++...+++-|......|.++-..+.+ +.+ ..+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676666556666665543 1 222222232 4666788899999999999999988877554332 233 223233
Q ss_pred HHHhhCCCCh--hHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhhcCCCcchhhhHh
Q 000201 779 LLMGLTDPND--HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIG 855 (1866)
Q Consensus 779 L~~~l~d~~~--~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~-~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~ 855 (1866)
+.+.+.+... .+.+.++.+++ +.+++.-+ ..+-+.....++--+. .++.+..|.+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgS------------------IinGfa~PLKeehk~fl~~vLlPLh----k~~~l~~y~~ 265 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGS------------------IINGFALPLKEEHKIFLLKVLLPLH----KVKSLSVYHP 265 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHH------------------HHSSCCSSCCHHHHHHHHHTTGGGG----GSSCGGGTHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHH------------------HHhccCCCCcHHHHHHHHHHHHHHH----ccchhHHhHH
Confidence 4443322211 12223332222 22222111 1122221111111111 1233445555
Q ss_pred hhhHHHHHHhcCCCHhHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhChhHHH---
Q 000201 856 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE--- 932 (1866)
Q Consensus 856 ~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~~~g~~~~~~l~~~L~~~L~~~~~~~~R~~a~~~L~~l~~~~g~~~l~--- 932 (1866)
++...+.+.+.. ++. ....++..|+..--... ..-..--+..+.+++...+...+.
T Consensus 266 qL~ycv~qf~eK-Dp~-------------------L~~~vi~~LLk~WP~tn-s~KevlFL~eleeile~~~~~ef~~i~ 324 (449)
T 2npp_B 266 QLAYCVVQFLEK-DST-------------------LTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFVKIM 324 (449)
T ss_dssp HHHHHHHHHHHH-CGG-------------------GHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhc-CcH-------------------hHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 555555444431 111 22233333433222111 111112234456666666666444
Q ss_pred -HHHHHHHHHhccCChhHHhHHHHHHH--HhhhhhchhhHhHHHHHHHHHHhhc-----cCCChHHHHHHHHHHHHHHH
Q 000201 933 -HILPDIIRNCSHQRASVRDGYLTLFK--YLPRSLGVQFQNYLQQVLPAILDGL-----ADENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 933 -~ll~~l~~~l~~~~~~vR~~al~~l~--~L~~~~g~~f~~~l~~il~~ll~~l-----~d~~~~VR~~a~~al~~i~~ 1003 (1866)
.++..+...+++++..|-+.|+..|. .+...+ ..+...++|.++..+ .+=+..||..+..++..+.+
T Consensus 325 ~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li----~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 325 EPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI----SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH----HTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH----HhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44455556678889999888887664 222222 223344555555544 34577899888888776554
No 138
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.22 E-value=22 Score=35.20 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHHHHHHHHH
Q 000201 916 AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 979 (1866)
Q Consensus 916 ~~~L~~l~~~~g~~~l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l~~il~~l 979 (1866)
+..|+.+......+.+.++++.|.+.+++.++.++--++.++.+|+..-+..|...+..-...|
T Consensus 32 m~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~I 95 (140)
T 1vdy_A 32 LEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAV 95 (140)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHH
Confidence 3344444443444567899999999999999999999999999999888888766655544333
No 139
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.20 E-value=47 Score=34.24 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhcc------CCChHHHHHHHHHHHHHH
Q 000201 693 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT------DTHPKVQSAGQTALQQVG 764 (1866)
Q Consensus 693 v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~------D~~~~VR~aA~~aL~~l~ 764 (1866)
-+..+..+.+.+.+.+..+..-|+.+|..+.++|+..+...+ ..++..|.+++. ..++.||..+...+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 355556667777889999999999999999999987654322 234555566554 246899999999999888
Q ss_pred hhccc
Q 000201 765 SVIKN 769 (1866)
Q Consensus 765 ~~i~~ 769 (1866)
..+.+
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77653
No 140
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=65.71 E-value=82 Score=34.34 Aligned_cols=140 Identities=9% Similarity=-0.060 Sum_probs=84.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhhhCcchhhhcchHHHHHHHHhCCCcHHHHHHH-HHHHHHHHHHhCcCchhcHH
Q 000201 578 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGA-LLAFECLCEKLGRLFEPYVI 656 (1866)
Q Consensus 578 ~ll~~L~~~~~~~~R~~A~~~L~~l~~~~g~~~l~~~~ii~~L~~~i~~~~~~~~r~~a-l~al~~L~~~l~~~~~p~v~ 656 (1866)
.++..|.+++..+.|..|...+....+... .+-++.+...+...++|...... ..+++.+...-+ .
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p-------~ 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHIN------ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP-------E 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCC------GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG-------G
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH-------H
Confidence 355666665543444333333322111111 23345666677777888765543 233333333211 2
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhh
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 733 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~ 733 (1866)
...+.+.....+++.-+|..+...+- ..........+++.+...+.++.+.+|++....|..++...|+.+...
T Consensus 131 ~~~~~l~~W~~s~~~w~rR~ai~~~l---~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 131 LISAYIPKWIASDNIWLQRAAILFQL---KYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGGTHHHHHHSSCHHHHHHHHHTTT---TCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH---HHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 24556777888999999999876542 222222345667777778899999999999999999999887765443
No 141
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=64.13 E-value=41 Score=32.76 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=59.9
Q ss_pred HhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHh
Q 000201 686 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 686 ~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~ 765 (1866)
+.++...+..++|.|++.|+|-+|.+-...+..|..+- ..++|.+.+.++..+..=. .+.|..+..
T Consensus 22 ~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~W~---ywil~~lv~ 87 (134)
T 3ut4_A 22 CKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIMWK---YWVIKLMIP 87 (134)
T ss_dssp TTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHHHH---HHHHHHHGG
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChHHH---HHHHHHHHH
Confidence 34566778899999999999999999988888776432 2556666666665554322 344455555
Q ss_pred hccchhHHhHHHHHHHhhCCCC
Q 000201 766 VIKNPEIASLVPTLLMGLTDPN 787 (1866)
Q Consensus 766 ~i~~~~i~~lv~~L~~~l~d~~ 787 (1866)
.+..+....+.|.|.+....|.
T Consensus 88 ~~~~~~~~~l~~eL~rl~~~pt 109 (134)
T 3ut4_A 88 YLIYPNKQLVKSELERLSSLEI 109 (134)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC
Confidence 5544445677777877777774
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.07 E-value=72 Score=31.65 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=60.5
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
+.+....+..+...+++.++.+...|+.++..+.++.+..|...+ ..++..+..++...++.|+..+...+.......
T Consensus 37 ~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 37 RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 345667778888888899999999999999999999887765443 455666666666678889988888777776554
Q ss_pred Cc
Q 000201 1422 PK 1423 (1866)
Q Consensus 1422 ~~ 1423 (1866)
+.
T Consensus 117 ~~ 118 (140)
T 3ldz_A 117 KN 118 (140)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=62.81 E-value=1.8e+02 Score=33.22 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCchH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCC------hhhHHHHHHHH
Q 000201 1522 PWQVKSAILSTLSIIIRKGGIALKPFLP-QLQTTFIKCLQDSTRTVRSSAALALGKLSALSTR------VDPLVGDLLSS 1594 (1866)
Q Consensus 1522 ~~~vr~~al~~L~~L~~~~~~~~~~~lp-~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~------~~~~l~~L~~~ 1594 (1866)
+...+..++..|..++..-......|+. .=+..+++...+.+.....-+..||+.|+.+... -..++..+...
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 3444555666666554432222222221 1244566667777889999999999999765111 13466777777
Q ss_pred hccCChhHHHHHHHHHHHHHHhcCcc--ccHHHHH--------HHHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhcCh
Q 000201 1595 LQVSDAGIREAILTALKGVLKHAGKS--VSSAVKI--------RVYSVLKDLVY---HDDDHVRVSAASILGIMSQCMED 1661 (1866)
Q Consensus 1595 l~~~~~~vr~~~l~aL~~vi~~~~~~--l~~~~~~--------~i~~~L~~~l~---~~~~~vr~~aa~~l~~L~~~~~~ 1661 (1866)
+.+.+..+...+++-|..++...... +...... ..|..|...+. +.+.++...+..++.++....|+
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 77777888888898888777765322 1111111 01444555554 56778888888888888877775
Q ss_pred hH
Q 000201 1662 GQ 1663 (1866)
Q Consensus 1662 ~~ 1663 (1866)
..
T Consensus 291 ~d 292 (339)
T 3dad_A 291 QD 292 (339)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.83 E-value=83 Score=31.54 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccC------CChHHHHHHHHHHHHHH
Q 000201 931 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLV 1002 (1866)
Q Consensus 931 l~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d------~~~~VR~~a~~al~~i~ 1002 (1866)
-.+.+..|...+.+.++.+--.++.++..+...+|..|...+ ..++..+.+.+.+ .++.||..++..+..-.
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345566777778889999999999999999999999885443 3345555555543 46788887777666555
Q ss_pred Hhh
Q 000201 1003 EHY 1005 (1866)
Q Consensus 1003 ~~~ 1005 (1866)
..|
T Consensus 126 ~~f 128 (149)
T 3g2s_A 126 VGL 128 (149)
T ss_dssp HHC
T ss_pred HHh
Confidence 444
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=59.38 E-value=79 Score=32.55 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=62.1
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhCC------CChhHHHHHHHHHHH
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD------SDSTTVAAAWEALSR 1416 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~d------~~~~v~~~A~~aL~~ 1416 (1866)
.+....+..|...+++.++.+...|+.++..+.++++..|...+ ..++..|..++.. .+..|+..+...+..
T Consensus 46 ~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 46 EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 45677788888889999999999999999999999887665433 4567777777752 467899999988888
Q ss_pred HHhcCCc
Q 000201 1417 VVASVPK 1423 (1866)
Q Consensus 1417 l~~~~~~ 1423 (1866)
.....+.
T Consensus 126 W~~~f~~ 132 (171)
T 1juq_A 126 WTMALPE 132 (171)
T ss_dssp HHHHCTT
T ss_pred HHHHcCC
Confidence 8776654
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=57.87 E-value=2.6e+02 Score=32.00 Aligned_cols=180 Identities=10% Similarity=0.111 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHHHHHHh-CcC--chhcH---HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhc--HhhH-HhHHHH
Q 000201 629 SAKRREGALLAFECLCEKL-GRL--FEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQGV-KLVLPS 699 (1866)
Q Consensus 629 ~~~~r~~al~al~~L~~~l-~~~--~~p~v---~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~--~~~v-~~llp~ 699 (1866)
++..|.-+...|..+...- +.. ...|+ ..++..++.+..+++. --.+...++.|++.-. ..-+ ...+-.
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~di--Al~~G~mLRecir~e~la~~iL~~~~f~~ 168 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEI--ALNCGIMLRECIRHEPLAKIILWSEQFYD 168 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTT--HHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchh--HhHHHHHHHHHHHhHHHHHHHhccHHHHH
Confidence 4555555556565555421 111 11233 2577777777765543 2233333444433110 0000 123346
Q ss_pred HHhhcCCCChhhHHHHHHHHHHHHhhC----hhhHHhhhcchhHHHhhhccCCChHHHHHHHHHHHHHHhhccchhHHhH
Q 000201 700 LLKGLEDKAWRTKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 775 (1866)
Q Consensus 700 L~~~L~~~~w~~r~~a~~~L~~l~~~~----~~~~~~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~~l~~~i~~~~i~~l 775 (1866)
++++++.++..+-..|...+..+.... .+.+..++..++..+-+++..++--.|..+.+-|+.+.-.-.|..
T Consensus 169 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~---- 244 (341)
T 1upk_A 169 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFT---- 244 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHH----
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHH----
Confidence 677888899999888888888776553 344566777888888888888888888888888887764322211
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhccccccCCcchhhhHHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 000201 776 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCS 842 (1866)
Q Consensus 776 v~~L~~~l~d~~~~vr~al~~L~~~~~~~~~~~~~l~~l~p~L~~~l~d~~~~vr~~a~~~l~~l~~ 842 (1866)
...+.+.++ .-+..+...|+|.+..++..|..++--+..
T Consensus 245 --vM~~Yis~~--------------------------~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 --IMTKYISKP--------------------------ENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp --HHHHHTTCH--------------------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhCCH--------------------------HHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 111222221 123445566677777777777777776665
No 147
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=56.78 E-value=98 Score=31.57 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=60.8
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLSD-SDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~d-~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+.+....+..|...+++.++.+...|+.++..++++++..|...+ ..++..+..++.. .++.|+..+...+......
T Consensus 47 ~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345677788888889999999999999999999999887665433 3456666666554 6789999988888877765
Q ss_pred CCc
Q 000201 1421 VPK 1423 (1866)
Q Consensus 1421 ~~~ 1423 (1866)
.+.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 544
No 148
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.20 E-value=3.4e+02 Score=31.07 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=76.4
Q ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHh-hH---HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhH--
Q 000201 657 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-- 730 (1866)
Q Consensus 657 ~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~-~v---~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~-- 730 (1866)
.-+..|+....+.+.+...-+..|+..+|.+..+- ++ ..++..+...+.+....+-+.|+.+|-.++...+...
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~l 239 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPL 239 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchH
Confidence 45677777888889999999999999999875553 33 4566777777777778888889999998887764321
Q ss_pred -Hhhhc--------chhHHHhhhcc---CCChHHHHHHHHHHHHHHhhccc
Q 000201 731 -SQCLP--------KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 731 -~~~l~--------~iv~~l~~~L~---D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
..... ..+..++..|+ ..+.+++..|..-+..+.....+
T Consensus 240 v~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 240 FIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 11111 22445566665 45677777766666555554443
No 149
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.07 E-value=6.9e+02 Score=34.38 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=83.5
Q ss_pred HHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcChhHHHH---HHH
Q 000201 1593 SSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDDDHVRVSAASILGIMSQCMEDGQLAD---LLQ 1669 (1866)
Q Consensus 1593 ~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~~~vr~~aa~~l~~L~~~~~~~~~~~---~l~ 1669 (1866)
..+.+.++.++.........+....+ .-+..+|+..|..++.+.+..-...+..++..++...|. .+.+ ++.
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd----~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~-~l~~~a~~l~ 481 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFD----TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNAS-AMRLNAAFVK 481 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHH-HHHHTHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHH-HHhHHHHHHH
Confidence 44566778887777766666666542 355777887777766555555556688888888876654 3333 344
Q ss_pred HHHhccCCCCcchhhhHHHHHHHH-HhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHhhhh
Q 000201 1670 ELLNLASSPSWAARHGSVLVFATF-LRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLLHQI 1741 (1866)
Q Consensus 1670 ~ll~~~~~~~~~~r~~~~~~L~~~-l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~~~~ 1741 (1866)
.++....+-+....+.....|..+ +...+. -.....+++.=++.+.+.+.....++.++.+.-.++.+..
T Consensus 482 giLD~l~~l~~~QiRklf~iL~~laf~~~~~--~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~ 552 (1323)
T 3s4w_B 482 GILDYLENMSPQQIRKIFCILSTLAFSQQPG--TSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA 552 (1323)
T ss_dssp GGGGGGGGCCHHHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHcCCCCC--cchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
Confidence 444433333322211112222222 222222 1124567777788888999999888887777666666554
No 150
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=48.70 E-value=2.2e+02 Score=28.43 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHHHHhhccC------CChHHHHHHHHHHHHHHH
Q 000201 932 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLAD------ENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 932 ~~ll~~l~~~l~~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~ll~~l~d------~~~~VR~~a~~al~~i~~ 1003 (1866)
.+.+..+...+.+.++.+--.++.++..+...+|..|...+ ..++..+.+.+.+ .++.|+..++..+..-..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45556677778889999999999999999999999886554 4466666666653 367888877776665554
Q ss_pred hh
Q 000201 1004 HY 1005 (1866)
Q Consensus 1004 ~~ 1005 (1866)
.+
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 44
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.38 E-value=35 Score=33.69 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=54.2
Q ss_pred hcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhC-----CC------ChhHHHHHHHH
Q 000201 1345 EGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLS-----DS------DSTTVAAAWEA 1413 (1866)
Q Consensus 1345 ~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~-----d~------~~~v~~~A~~a 1413 (1866)
+.+..++..|.+++++.++.+..-|+.+|..++.+....|...+..-...+-.+.+ |+ ...||..|-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 44688999999999999999999999999999988877776655444433332221 21 14788888888
Q ss_pred HHHHHh
Q 000201 1414 LSRVVA 1419 (1866)
Q Consensus 1414 L~~l~~ 1419 (1866)
+..+..
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 777653
No 152
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=48.28 E-value=4.4e+02 Score=31.81 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCcchhhhHhhhhHHHHHHhcCCCHhHHHHHHHHHHHHHh
Q 000201 826 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 885 (1866)
Q Consensus 826 ~~~vr~~a~~~l~~l~~~l~~~~~l~~~~~~ll~~L~~~l~d~~~~vR~~a~~aL~~l~~ 885 (1866)
++.+-.-||.=+|.++......+.+..-+ ..-..+++++.+++++||..|..|+..+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45666677777888887654433322222 246777888999999999999999988764
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=48.19 E-value=96 Score=31.42 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHhHHHHHHhhcC-CCChhhHHHHHHHHHHHHhhChhhHHhhhc--chhHH-Hhhhcc---CCChHHHHHHHHHHHHHHh
Q 000201 693 VKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPK-LTEVLT---DTHPKVQSAGQTALQQVGS 765 (1866)
Q Consensus 693 v~~llp~L~~~L~-~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~~-l~~~L~---D~~~~VR~aA~~aL~~l~~ 765 (1866)
-+..+..+.+.|. +.++.+..-|+.+|..+.++|+..+...+. .++.. +.+++. +++..||..+...+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3555556666776 478899999999999999999876654322 34444 445543 4556899999988888877
Q ss_pred hcc
Q 000201 766 VIK 768 (1866)
Q Consensus 766 ~i~ 768 (1866)
.++
T Consensus 131 ~f~ 133 (157)
T 1elk_A 131 AFR 133 (157)
T ss_dssp HHT
T ss_pred HcC
Confidence 664
No 154
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=41.36 E-value=2.2e+02 Score=27.68 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHH
Q 000201 1552 QTTFIKCLQDSTRTVRSSAALALGKLSALSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYS 1631 (1866)
Q Consensus 1552 ~~~l~~~l~d~~~~vR~~Aa~aLg~L~~~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~ 1631 (1866)
+...+..|+.+.+.+...+..|+.+. .+...++..+.+.++...+.-|-..+..+..|+++++..-...+...+..
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~----~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~ 85 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENK----KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD 85 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTG----GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 33444556666667777777776543 34455666777777777788899999999999998876655466666666
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHHh--hcChhHH
Q 000201 1632 VLKDLVYHD-DDHVRVSAASILGIMSQ--CMEDGQL 1664 (1866)
Q Consensus 1632 ~L~~~l~~~-~~~vr~~aa~~l~~L~~--~~~~~~~ 1664 (1866)
.+...+..- ++..|.....++...-. .+|++.+
T Consensus 86 ~l~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~~~i 121 (132)
T 4flb_A 86 VLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMI 121 (132)
T ss_dssp THHHHHHTTCSTTTHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCCcCHHHH
Confidence 655544332 45566666666665542 4555433
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.97 E-value=1.2e+02 Score=32.91 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=53.5
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhh--cchhHHHhhhcc-CCChHHHHHHHHHHHHHHhhccc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN 769 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l--~~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~~ 769 (1866)
+..+..|.+.|.+.+..+..-|+.+|..++++++..+...+ ..++..|.++++ .+++.|+..+...+...+..+.+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45556666777888999999999999999999876543221 133333333333 46789999999999888876653
No 156
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.06 E-value=3.4e+02 Score=29.23 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=58.8
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhc
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+.+....+..|...+++.++.+...|+.++..+.++.+..+...+ ..++..|..+++ ..+..|+..+...+......
T Consensus 40 ~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 40 DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 455677888888889999999999999999999998876554322 344444444443 46778999998888887766
Q ss_pred CCc
Q 000201 1421 VPK 1423 (1866)
Q Consensus 1421 ~~~ 1423 (1866)
...
T Consensus 120 f~~ 122 (226)
T 3zyq_A 120 FRN 122 (226)
T ss_dssp TTT
T ss_pred hCC
Confidence 544
No 157
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=35.86 E-value=2.1e+02 Score=28.70 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=51.4
Q ss_pred HhHHHHHHhhcCC-CChhhHHHHHHHHHHHHhhChhhHHhhhc--chhH-HHhhhccC---CChHHHHHHHHHHHHHHhh
Q 000201 694 KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVP-KLTEVLTD---THPKVQSAGQTALQQVGSV 766 (1866)
Q Consensus 694 ~~llp~L~~~L~~-~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~-~l~~~L~D---~~~~VR~aA~~aL~~l~~~ 766 (1866)
+..+..+...+.. .+..+..-|+.+|..++++|+..+...+. .++. .+.+++.+ .+..||..+...+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4455555556653 57777778999999999999876544322 3333 24444443 3457999999999999887
Q ss_pred ccc
Q 000201 767 IKN 769 (1866)
Q Consensus 767 i~~ 769 (1866)
+++
T Consensus 132 F~~ 134 (152)
T 3rru_A 132 FPG 134 (152)
T ss_dssp CSS
T ss_pred hCC
Confidence 764
No 158
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=35.11 E-value=4.4e+02 Score=30.87 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=95.4
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhcC---
Q 000201 1586 PLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVYHDD--DHVRVSAASILGIMSQCME--- 1660 (1866)
Q Consensus 1586 ~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~~~~--~~vr~~aa~~l~~L~~~~~--- 1660 (1866)
.++..|+..+.++|+.-|...-..|..+-.+... .-.-.+..+-+.+...+.+.+ .++ ....+++|.+..-..
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fiye~e~~~GI-aeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGI-AELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHTSSCCCSCH-HHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhccCCCC
Confidence 4677888888888887777777766666654432 222234445455555443322 222 123556666655432
Q ss_pred hhHHHHHHHH-HHhccCCCCcchhh-hHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHhHHHHh
Q 000201 1661 DGQLADLLQE-LLNLASSPSWAARH-GSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKALGRLLL 1738 (1866)
Q Consensus 1661 ~~~~~~~l~~-ll~~~~~~~~~~r~-~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~alg~ll~ 1738 (1866)
.++...++.. ++..........-+ ....++..++...|. +...++..+.++.=-.+..---.-..=+..++.
T Consensus 252 Keehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~------L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe 325 (392)
T 2jak_A 252 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST------LTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 325 (392)
T ss_dssp CHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG------GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch------hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 1233333333 44443333322221 233455556666543 455666666665433332222223333444444
Q ss_pred hhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000201 1739 HQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSAL 1777 (1866)
Q Consensus 1739 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l 1777 (1866)
..... +..+...+++..+..++++++..|-..|+...
T Consensus 326 ~~~~~--~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 326 VIEPS--EFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp TCCHH--HHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred hCCHH--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 33221 12245567778888889999998888887544
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.45 E-value=3.6e+02 Score=27.08 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhc-cCChhHHhHHHHHHHHhhhhhchhhHhHH--HHHHHH-HHhhcc---CCChHHHHHHHHHHHHHHH
Q 000201 931 FEHILPDIIRNCS-HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPA-ILDGLA---DENESVRDAALGAGHVLVE 1003 (1866)
Q Consensus 931 l~~ll~~l~~~l~-~~~~~vR~~al~~l~~L~~~~g~~f~~~l--~~il~~-ll~~l~---d~~~~VR~~a~~al~~i~~ 1003 (1866)
-.+.+..+.+.++ +.++.+.-.++.++..+...+|..|...+ ..++.. +.+.+. ++...||..++..+..-..
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3455666777776 47888889999999999999999886543 224444 344442 3445788777666555444
Q ss_pred hh
Q 000201 1004 HY 1005 (1866)
Q Consensus 1004 ~~ 1005 (1866)
.+
T Consensus 131 ~f 132 (157)
T 1elk_A 131 AF 132 (157)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 160
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=32.14 E-value=2.2e+02 Score=27.72 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=50.8
Q ss_pred cchhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcC
Q 000201 1342 IDEEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVASV 1421 (1866)
Q Consensus 1342 ~~~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~il~~L~~ll~d~~~~v~~~A~~aL~~l~~~~ 1421 (1866)
++.+.+.++++.|+.+++|-||.+...++..+..+. ..+++.+...++..|.. --+..|..++...
T Consensus 24 ~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-----------~~l~p~I~~vl~s~D~~---W~ywil~~lv~~~ 89 (134)
T 3ut4_A 24 LIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-----------SIAMPHILTILQGNDIM---WKYWVIKLMIPYL 89 (134)
T ss_dssp CCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-----------HHHHHHHHHHHHSSCHH---HHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-----------HhhHHHHHHHHHcCChH---HHHHHHHHHHHcC
Confidence 466778999999999999999998877777766543 23333333444444432 2344566666666
Q ss_pred CcchhhhhHHHHHHHH
Q 000201 1422 PKEVQPSYIKVIRDAI 1437 (1866)
Q Consensus 1422 ~~~~l~~l~~~l~~~l 1437 (1866)
+.+....+.+.+.+..
T Consensus 90 ~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 90 IYPNKQLVKSELERLS 105 (134)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6555444444444443
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.74 E-value=1.8e+02 Score=31.28 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=52.1
Q ss_pred HhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChhhHHhhhc--chhHHHhhhcc-CCChHHHHHHHHHHHHHHhhcc
Q 000201 694 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP--KIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIK 768 (1866)
Q Consensus 694 ~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~~~~~~l~--~iv~~l~~~L~-D~~~~VR~aA~~aL~~l~~~i~ 768 (1866)
+..+..+.+.|.+.+..+..-|+.+|..++.+++..+...+. .++..+..++. ..++.||..+..-+...+..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 444555566678889999999999999999998875533211 24444444443 4578899988888887776554
No 162
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=27.71 E-value=54 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=25.5
Q ss_pred chhhccccCCCCCChHHHHHHHHHHHH--HHHHHHHHHH
Q 000201 60 DIGKSTKKADKGKTAKEEARELLLNEE--ASIREKVQGV 96 (1866)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~q~~~~--~~~~~~~~~~ 96 (1866)
|+++|+| ..+.|++|.+-+++|.+| ..+|..++..
T Consensus 12 eLakK~K--~~gLT~eEk~EQ~~LR~eYl~~fR~~~r~~ 48 (60)
T 3bhp_A 12 ELAAKAK--AGVITEEEKAEQQKLRQEYLKGFRSSMKNT 48 (60)
T ss_dssp HHHHHHH--HTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566443 478999999999999988 5677666543
No 163
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=26.62 E-value=9.1e+02 Score=29.06 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCchHHHH-----HHHHHHhcCC---CHHHHHHHHHHHHHH---Hh
Q 000201 1511 GPLIRIIGDRFPWQVKSAILSTLSIIIRKGGIALKPFLPQLQ-----TTFIKCLQDS---TRTVRSSAALALGKL---SA 1579 (1866)
Q Consensus 1511 ~~Li~~l~~~~~~~vr~~al~~L~~L~~~~~~~~~~~lp~L~-----~~l~~~l~d~---~~~vR~~Aa~aLg~L---~~ 1579 (1866)
+.|+.+++...-..+-..++.+|-.++.+.+..-..++++++ ..+++.|... ++++..........| ..
T Consensus 274 ~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 274 LDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456666665444555556666666655433211111222211 1223333332 566665555544444 22
Q ss_pred ccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHH
Q 000201 1580 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKDLVY------HDDDHVRVSAASILG 1653 (1866)
Q Consensus 1580 ~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~~l~------~~~~~vr~~aa~~l~ 1653 (1866)
--.+++.|..++.++.-.=.+--+.. +-.++=..+...+-. .....+..+|...-. +.|+.+-..|+.=+|
T Consensus 354 ~ltsfDeY~~El~sG~L~WSP~H~se--~FW~ENa~kf~e~~~-~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Dig 430 (480)
T 1ho8_A 354 ELTSFDEYVAELDSKLLCWSPPHVDN--GFWSDNIDEFKKDNY-KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDIT 430 (480)
T ss_dssp TCCHHHHHHHHHHHTCCCCCGGGGCH--HHHHHHSGGGSSGGG-HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhcCCcccCCCccch--hHHHHHHHHHHhcch-HHHHHHHHHHhhhccccccccCCCcceEEeecccHH
Confidence 23567888888877642211111111 112222222222111 233444444432110 123444555666677
Q ss_pred HHHhhcChhHHHHHHHHHHhccCCCCcchhhhHHHHHHHHHhhCCCcccCCcchHHHHHHHHhhhcCCChhHHHHHHHHh
Q 000201 1654 IMSQCMEDGQLADLLQELLNLASSPSWAARHGSVLVFATFLRHNPSAISMSPLFLSILDRLKSSLKDEKFPLREASTKAL 1733 (1866)
Q Consensus 1654 ~L~~~~~~~~~~~~l~~ll~~~~~~~~~~r~~~~~~L~~~l~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~a~~al 1733 (1866)
.+++..|... .+++++ ..-..+.+.+.++++.+|..|..|+
T Consensus 431 efvr~~P~gr--~i~~~l-------------------------------------g~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 431 HVVELLPESI--DVLDKT-------------------------------------GGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp HHHHHCTTHH--HHHHHH-------------------------------------SHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHCcchh--HHHHHc-------------------------------------CcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7777777531 111110 1123556778889999999999999
Q ss_pred HHHHhhh
Q 000201 1734 GRLLLHQ 1740 (1866)
Q Consensus 1734 g~ll~~~ 1740 (1866)
.+++.+.
T Consensus 472 Qklm~~~ 478 (480)
T 1ho8_A 472 QAIIGYT 478 (480)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9988763
No 164
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.77 E-value=5.7e+02 Score=27.25 Aligned_cols=79 Identities=9% Similarity=0.041 Sum_probs=57.6
Q ss_pred hhcHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhccchhhhhH--HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhc
Q 000201 1344 EEGVESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEA--PNMISTLIVLLS-DSDSTTVAAAWEALSRVVAS 1420 (1866)
Q Consensus 1344 ~~~~~~ll~~L~~~l~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~~il~~L~~ll~-d~~~~v~~~A~~aL~~l~~~ 1420 (1866)
+.+....+..|...+++.++.+...|+.++..++++.+..|...+ ..++..+..++. ..+..|+..+.+.+......
T Consensus 37 ~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 37 DVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 345677778888889999999999999999999998876654332 235555555554 45778998888777777665
Q ss_pred CC
Q 000201 1421 VP 1422 (1866)
Q Consensus 1421 ~~ 1422 (1866)
..
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 44
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.52 E-value=7.5e+02 Score=27.03 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=72.0
Q ss_pred hhhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000201 1503 KEFVIPITGPLIRIIGD-RFPWQVKSAILSTLSIIIRKGGIALKPFL--PQLQTTFIKCLQDSTRTVRSSAALALGKLSA 1579 (1866)
Q Consensus 1503 ~~~v~~i~~~Li~~l~~-~~~~~vr~~al~~L~~L~~~~~~~~~~~l--p~L~~~l~~~l~d~~~~vR~~Aa~aLg~L~~ 1579 (1866)
+.+++-.+-|.++.-.. +.-.-.|.++|..+|.+++.-...+-.|+ .+++|.+++.++..++-.+..|...+.++..
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 33444444455544322 21245788888888888765444444444 4688999999999999999999999888853
Q ss_pred ccCChhhHHHHHHHHhccCChhHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH
Q 000201 1580 LSTRVDPLVGDLLSSLQVSDAGIREAILTALKGVLKHAGKSVSSAVKIRVYSVLKD 1635 (1866)
Q Consensus 1580 ~~~~~~~~l~~L~~~l~~~~~~vr~~~l~aL~~vi~~~~~~l~~~~~~~i~~~L~~ 1635 (1866)
-... +.-+ -...+-..+....|..++.......+.-....|+.....
T Consensus 175 dd~G----L~Yi-----C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlR 221 (268)
T 2fv2_A 175 DDTG----LAYI-----CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLR 221 (268)
T ss_dssp SHHH----HHHH-----TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchh----HHHH-----HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 1100 0000 122344445555666666655444454444555554444
No 166
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.93 E-value=5.4e+02 Score=24.75 Aligned_cols=98 Identities=9% Similarity=0.176 Sum_probs=62.2
Q ss_pred HhHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhcHhhHHhHHHHHHhhcCCCChhhHHHHHHHHHHHHhhChh----hHH
Q 000201 656 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ----QLS 731 (1866)
Q Consensus 656 ~~llp~ll~~~~D~~~~VR~~a~~al~~i~~~l~~~~v~~llp~L~~~L~~~~w~~r~~a~~~L~~l~~~~~~----~~~ 731 (1866)
...+...+..+....+.+...+.+++... ...+.++..+.+.+.......|...+.++..++..+.. .+.
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~ 80 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH
Confidence 34455566667778888888888877643 12245556666666667778899999999999987632 344
Q ss_pred hhhcchhHHHhhhccCCChHHHHHHHHHHH
Q 000201 732 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 761 (1866)
Q Consensus 732 ~~l~~iv~~l~~~L~D~~~~VR~aA~~aL~ 761 (1866)
..+..++|.++....| ++.|....+.+.
T Consensus 81 ~~f~~~l~~~~~~~~~--~~~~~kl~~ll~ 108 (132)
T 4flb_A 81 ESFADVLPEAAALVKD--PSVSKSVERIFK 108 (132)
T ss_dssp HHHHTTHHHHHHTTCS--TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 4555556655555544 344554444444
No 167
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.08 E-value=2.5e+02 Score=27.92 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred hhHHHHHHHHhHHHHhhhhhcCCCChhhHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCcc-------hhhhhHhhH
Q 000201 1723 FPLREASTKALGRLLLHQIQSGPANTTVVVDILASVVSALHDDSSEVRRRALSALKSVAKANPS-------AIMVHVALF 1795 (1866)
Q Consensus 1723 ~~~r~~a~~alg~ll~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~vR~~a~~~l~~~a~~~~~-------~~~~~l~~l 1795 (1866)
+++.+..+..+..++..... ....+...+...+....++-|-.++|++..++++... .+.+.+...
T Consensus 19 ~~~S~~~I~~LT~~a~~~~~-------~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~ 91 (145)
T 3d9j_A 19 PPISKAKMTQITKAAIKAIK-------FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNN 91 (145)
T ss_dssp SSCCHHHHHHHHHHHHHTGG-------GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHH
Confidence 34556666677766665432 2233444444444445678899999999999997654 566677666
Q ss_pred HHHHHhhhccCcchhhhhHHH
Q 000201 1796 GPALAECLKDGSTPVRLAAER 1816 (1866)
Q Consensus 1796 ~p~l~~~~~~~~~~vk~aae~ 1816 (1866)
+|.+|..+-..+..+|....+
T Consensus 92 L~~~f~~~~~~~~~~r~kl~r 112 (145)
T 3d9j_A 92 IISTFQNLYRCPGDDKSKIVR 112 (145)
T ss_dssp HHHHHHHHTSSCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 777766655444556644443
Done!