Query 000202
Match_columns 1866
No_of_seqs 1318 out of 9629
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 23:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.6E-88 9.9E-93 936.7 47.6 554 1-563 1-640 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4E-74 8.6E-79 749.6 37.8 475 981-1501 161-651 (889)
3 PLN03210 Resistant to P. syrin 100.0 1.5E-58 3.3E-63 642.0 43.8 771 900-1790 105-909 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 9.6E-39 2.1E-43 417.9 38.1 269 572-851 27-332 (889)
5 PF00931 NB-ARC: NB-ARC domain 100.0 8.3E-40 1.8E-44 391.9 15.2 276 983-1259 1-284 (287)
6 PLN03194 putative disease resi 100.0 2.8E-38 6E-43 324.9 14.1 154 11-178 22-178 (187)
7 PF00931 NB-ARC: NB-ARC domain 100.0 6.3E-35 1.4E-39 349.7 7.5 269 191-468 1-283 (287)
8 PLN00113 leucine-rich repeat r 99.8 4.8E-20 1E-24 259.0 23.7 89 1716-1813 498-588 (968)
9 PLN00113 leucine-rich repeat r 99.8 3E-20 6.4E-25 261.1 21.4 405 1374-1813 139-564 (968)
10 KOG0444 Cytoskeletal regulator 99.8 2.5E-20 5.4E-25 216.8 -5.3 325 1371-1790 51-378 (1255)
11 PF01582 TIR: TIR domain; Int 99.7 3.2E-19 6.9E-24 187.5 3.2 129 18-146 1-140 (141)
12 KOG4194 Membrane glycoprotein 99.7 5.7E-19 1.2E-23 205.5 5.2 346 1370-1783 97-448 (873)
13 KOG4194 Membrane glycoprotein 99.7 1.1E-17 2.4E-22 194.9 8.6 388 1378-1834 55-462 (873)
14 smart00255 TIR Toll - interleu 99.7 4.4E-17 9.6E-22 172.1 11.0 134 15-149 1-138 (140)
15 KOG0444 Cytoskeletal regulator 99.6 4.4E-17 9.4E-22 190.1 0.4 187 1368-1575 96-285 (1255)
16 KOG0472 Leucine-rich repeat pr 99.6 2.7E-17 5.8E-22 184.2 -5.6 396 1366-1807 128-539 (565)
17 KOG0618 Serine/threonine phosp 99.6 2.7E-16 5.8E-21 194.0 -1.6 116 1687-1809 356-489 (1081)
18 KOG0472 Leucine-rich repeat pr 99.5 2.9E-16 6.2E-21 176.0 -7.4 110 1657-1785 430-539 (565)
19 KOG0618 Serine/threonine phosp 99.4 1.8E-14 3.9E-19 178.2 0.1 400 1376-1813 22-468 (1081)
20 KOG0617 Ras suppressor protein 99.4 8.1E-15 1.7E-19 145.9 -3.5 164 1388-1574 24-189 (264)
21 PF13676 TIR_2: TIR domain; PD 99.4 3.5E-13 7.6E-18 133.3 4.0 91 18-116 1-91 (102)
22 KOG0617 Ras suppressor protein 99.3 3.6E-14 7.9E-19 141.3 -4.7 168 1368-1557 26-195 (264)
23 PRK15387 E3 ubiquitin-protein 99.1 5.9E-10 1.3E-14 144.7 15.3 109 1377-1501 203-311 (788)
24 PRK15387 E3 ubiquitin-protein 99.1 6.8E-10 1.5E-14 144.1 14.8 90 1398-1501 202-291 (788)
25 PRK15370 E3 ubiquitin-protein 99.1 3.6E-10 7.8E-15 147.9 12.2 114 1376-1501 179-292 (754)
26 PRK15370 E3 ubiquitin-protein 99.0 3.1E-09 6.7E-14 139.3 13.3 165 1375-1575 199-363 (754)
27 PRK04841 transcriptional regul 98.9 6.4E-08 1.4E-12 136.0 25.4 274 997-1304 30-332 (903)
28 PRK00411 cdc6 cell division co 98.9 6.2E-08 1.3E-12 121.8 19.3 249 184-442 28-309 (394)
29 KOG4237 Extracellular matrix p 98.8 2.9E-10 6.3E-15 128.7 -2.4 145 1380-1538 51-199 (498)
30 PF01637 Arch_ATPase: Archaeal 98.8 7.6E-09 1.7E-13 120.1 8.3 195 188-387 1-232 (234)
31 PRK04841 transcriptional regul 98.7 7.6E-08 1.6E-12 135.3 16.3 241 181-439 9-275 (903)
32 PF05729 NACHT: NACHT domain 98.7 5.7E-08 1.2E-12 106.0 11.7 144 210-358 1-163 (166)
33 KOG4237 Extracellular matrix p 98.7 3.3E-09 7.2E-14 120.4 1.3 124 1377-1501 69-197 (498)
34 KOG0532 Leucine-rich repeat (L 98.7 1.3E-09 2.9E-14 128.9 -2.9 177 1374-1575 74-251 (722)
35 TIGR03015 pepcterm_ATPase puta 98.7 7.2E-07 1.6E-11 105.9 20.0 180 996-1180 40-242 (269)
36 PRK00411 cdc6 cell division co 98.6 1.9E-06 4.1E-11 108.4 23.1 286 980-1283 32-357 (394)
37 TIGR02928 orc1/cdc6 family rep 98.6 1.1E-06 2.5E-11 109.2 20.1 248 184-442 13-301 (365)
38 PF14580 LRR_9: Leucine-rich r 98.6 4.7E-08 1E-12 104.6 6.0 122 1374-1499 18-147 (175)
39 PF01637 Arch_ATPase: Archaeal 98.6 1.4E-07 3.1E-12 109.5 9.7 193 980-1175 1-233 (234)
40 COG2256 MGS1 ATPase related to 98.6 1.9E-07 4E-12 108.0 9.6 144 183-356 21-174 (436)
41 TIGR00635 ruvB Holliday juncti 98.5 3.6E-07 7.9E-12 110.4 11.9 227 186-436 4-245 (305)
42 PRK00080 ruvB Holliday junctio 98.5 1.4E-07 3E-12 114.7 7.4 233 182-436 21-266 (328)
43 TIGR03015 pepcterm_ATPase puta 98.5 1.9E-06 4.1E-11 102.3 17.0 179 209-393 43-242 (269)
44 PF05729 NACHT: NACHT domain 98.5 4.6E-07 1E-11 98.8 10.2 141 1000-1146 1-163 (166)
45 cd00116 LRR_RI Leucine-rich re 98.5 3.8E-08 8.3E-13 120.3 1.1 85 1418-1502 19-118 (319)
46 TIGR02928 orc1/cdc6 family rep 98.4 2.5E-05 5.4E-10 97.3 25.3 288 980-1283 17-349 (365)
47 PRK06893 DNA replication initi 98.4 1.2E-06 2.5E-11 100.4 11.5 144 209-383 39-197 (229)
48 TIGR00635 ruvB Holliday juncti 98.4 1.1E-05 2.3E-10 97.7 19.0 270 978-1283 4-288 (305)
49 COG2256 MGS1 ATPase related to 98.4 7.6E-06 1.6E-10 95.0 15.9 207 990-1224 39-266 (436)
50 KOG1259 Nischarin, modulator o 98.3 6.3E-08 1.4E-12 105.7 -0.9 126 1371-1501 280-408 (490)
51 COG2909 MalT ATP-dependent tra 98.3 2.6E-05 5.5E-10 98.7 20.6 279 989-1303 26-337 (894)
52 KOG0532 Leucine-rich repeat (L 98.3 7.7E-08 1.7E-12 114.3 -1.6 131 1367-1501 113-243 (722)
53 PRK13342 recombination factor 98.3 3.8E-06 8.3E-11 105.2 12.6 173 183-385 9-192 (413)
54 PF14580 LRR_9: Leucine-rich r 98.3 1.1E-06 2.3E-11 94.3 6.2 112 1364-1477 30-148 (175)
55 cd00116 LRR_RI Leucine-rich re 98.3 1E-06 2.2E-11 107.7 7.1 80 1422-1501 137-230 (319)
56 PRK00080 ruvB Holliday junctio 98.3 7E-06 1.5E-10 99.8 14.0 272 976-1283 23-309 (328)
57 PRK06893 DNA replication initi 98.2 6.6E-06 1.4E-10 94.2 11.4 152 999-1178 39-205 (229)
58 KOG3678 SARM protein (with ste 98.2 5.5E-06 1.2E-10 95.3 9.7 92 12-109 609-709 (832)
59 PRK07471 DNA polymerase III su 98.2 3.9E-05 8.4E-10 93.2 17.4 200 181-388 14-237 (365)
60 KOG3207 Beta-tubulin folding c 98.2 5.3E-07 1.1E-11 104.5 1.1 189 1371-1570 142-338 (505)
61 KOG4341 F-box protein containi 98.2 1.2E-07 2.6E-12 109.2 -4.1 147 1661-1813 293-443 (483)
62 PRK14949 DNA polymerase III su 98.2 1.6E-05 3.6E-10 102.9 14.6 183 183-384 13-215 (944)
63 PRK07003 DNA polymerase III su 98.1 2.1E-05 4.5E-10 99.9 14.8 185 183-383 13-214 (830)
64 COG4886 Leucine-rich repeat (L 98.1 2E-06 4.4E-11 108.3 5.8 174 1374-1571 115-290 (394)
65 PRK14961 DNA polymerase III su 98.1 2.8E-05 6.1E-10 95.6 15.4 178 183-384 13-215 (363)
66 PLN03150 hypothetical protein; 98.1 4.6E-06 9.9E-11 109.7 9.0 101 1398-1499 419-522 (623)
67 PRK12402 replication factor C 98.1 2.4E-05 5.2E-10 96.3 14.7 193 184-385 13-222 (337)
68 PF05496 RuvB_N: Holliday junc 98.1 2.6E-05 5.6E-10 85.2 12.8 171 182-384 20-216 (233)
69 KOG1259 Nischarin, modulator o 98.1 6.1E-07 1.3E-11 98.2 0.1 133 1422-1575 284-416 (490)
70 TIGR03420 DnaA_homol_Hda DnaA 98.1 2.1E-05 4.5E-10 90.7 12.8 171 185-388 14-200 (226)
71 PF07725 LRR_3: Leucine Rich R 98.1 1.6E-06 3.5E-11 54.8 1.7 20 534-553 1-20 (20)
72 PRK12323 DNA polymerase III su 98.1 2.6E-05 5.6E-10 97.9 13.5 192 183-384 13-220 (700)
73 COG3903 Predicted ATPase [Gene 98.1 1.4E-06 3E-11 102.0 2.3 222 208-439 13-249 (414)
74 PRK14960 DNA polymerase III su 98.1 2.1E-05 4.5E-10 99.0 12.5 187 183-383 12-213 (702)
75 PLN03025 replication factor C 98.1 2.9E-05 6.2E-10 94.0 13.5 181 182-383 9-194 (319)
76 PRK14963 DNA polymerase III su 98.1 4E-05 8.7E-10 97.0 15.0 190 183-383 11-211 (504)
77 PRK13342 recombination factor 98.1 7E-05 1.5E-09 93.9 17.1 173 979-1178 13-198 (413)
78 PF13173 AAA_14: AAA domain 98.1 9.9E-06 2.2E-10 83.7 7.9 120 209-350 2-127 (128)
79 TIGR01242 26Sp45 26S proteasom 98.0 1.9E-05 4.1E-10 97.6 11.3 172 185-382 121-327 (364)
80 PF13191 AAA_16: AAA ATPase do 98.0 8.6E-06 1.9E-10 90.6 7.3 50 187-236 1-51 (185)
81 PRK09112 DNA polymerase III su 98.0 0.00027 5.9E-09 85.5 20.2 195 181-387 18-238 (351)
82 PRK04195 replication factor C 98.0 3.3E-05 7.2E-10 98.8 13.1 177 182-384 10-197 (482)
83 PF13855 LRR_8: Leucine rich r 98.0 4.1E-06 8.8E-11 73.8 3.2 58 1423-1480 2-60 (61)
84 PTZ00202 tuzin; Provisional 98.0 2.8E-05 6E-10 91.9 10.8 194 150-356 218-432 (550)
85 PRK14956 DNA polymerase III su 98.0 4E-05 8.7E-10 94.2 12.7 190 183-383 15-216 (484)
86 COG4886 Leucine-rich repeat (L 98.0 6.1E-06 1.3E-10 104.0 5.9 173 1379-1574 97-271 (394)
87 KOG2028 ATPase related to the 98.0 4.1E-05 8.8E-10 86.6 11.6 149 182-356 134-292 (554)
88 PRK07994 DNA polymerase III su 98.0 5.9E-05 1.3E-09 96.8 14.5 189 183-384 13-215 (647)
89 PRK14957 DNA polymerase III su 98.0 7.8E-05 1.7E-09 94.4 15.3 177 183-383 13-214 (546)
90 COG2909 MalT ATP-dependent tra 98.0 6.4E-05 1.4E-09 95.2 14.2 241 181-439 14-281 (894)
91 PRK08691 DNA polymerase III su 98.0 3.8E-05 8.2E-10 97.8 12.4 189 183-383 13-214 (709)
92 PRK00440 rfc replication facto 98.0 9.4E-05 2E-09 90.3 15.6 182 183-385 14-199 (319)
93 PF13855 LRR_8: Leucine rich r 98.0 5.3E-06 1.2E-10 73.0 3.1 60 1397-1457 1-61 (61)
94 PRK05564 DNA polymerase III su 97.9 0.00013 2.8E-09 88.2 16.1 175 186-386 4-187 (313)
95 PRK08727 hypothetical protein; 97.9 6.1E-05 1.3E-09 86.5 12.4 164 185-381 18-196 (233)
96 PRK13341 recombination factor 97.9 5.4E-05 1.2E-09 99.4 13.3 145 183-358 25-181 (725)
97 cd00009 AAA The AAA+ (ATPases 97.9 6.2E-05 1.3E-09 80.1 11.6 123 189-329 1-131 (151)
98 PLN03150 hypothetical protein; 97.9 1.7E-05 3.6E-10 104.5 8.5 103 1377-1480 420-526 (623)
99 PF13173 AAA_14: AAA domain 97.9 2.1E-05 4.5E-10 81.3 7.4 120 999-1138 2-127 (128)
100 PTZ00112 origin recognition co 97.9 0.00025 5.5E-09 90.4 18.0 171 184-359 753-950 (1164)
101 TIGR00678 holB DNA polymerase 97.9 0.00023 4.9E-09 79.3 16.2 160 197-385 3-187 (188)
102 PRK07940 DNA polymerase III su 97.9 0.00015 3.2E-09 88.9 15.7 174 186-386 5-210 (394)
103 PRK14962 DNA polymerase III su 97.9 0.00011 2.4E-09 92.3 14.4 177 182-382 10-211 (472)
104 cd01128 rho_factor Transcripti 97.9 2.3E-05 4.9E-10 89.7 7.6 90 999-1089 16-114 (249)
105 TIGR03420 DnaA_homol_Hda DnaA 97.9 5.5E-05 1.2E-09 87.2 10.8 166 985-1178 24-203 (226)
106 PF13401 AAA_22: AAA domain; P 97.9 7.5E-05 1.6E-09 77.7 10.2 113 209-327 4-125 (131)
107 PRK14964 DNA polymerase III su 97.8 0.00015 3.3E-09 90.4 14.3 178 183-384 10-212 (491)
108 PRK14951 DNA polymerase III su 97.8 0.00016 3.5E-09 92.7 14.9 188 183-383 13-219 (618)
109 PRK06645 DNA polymerase III su 97.8 0.00017 3.8E-09 90.8 14.9 185 182-383 17-223 (507)
110 COG3899 Predicted ATPase [Gene 97.8 8.1E-05 1.8E-09 100.4 12.4 252 187-442 1-321 (849)
111 KOG3207 Beta-tubulin folding c 97.8 5.3E-06 1.2E-10 96.5 0.8 191 1372-1573 118-316 (505)
112 PRK08903 DnaA regulatory inact 97.8 6.3E-05 1.4E-09 86.5 9.5 173 183-391 15-201 (227)
113 PRK14958 DNA polymerase III su 97.8 0.00016 3.6E-09 91.8 13.7 178 183-384 13-215 (509)
114 KOG4341 F-box protein containi 97.8 1.5E-06 3.2E-11 100.4 -4.2 144 1660-1811 266-416 (483)
115 PRK09376 rho transcription ter 97.8 4.4E-05 9.5E-10 90.4 7.8 89 1000-1089 170-267 (416)
116 KOG2028 ATPase related to the 97.8 0.00015 3.2E-09 82.2 11.5 160 990-1171 153-331 (554)
117 PRK14955 DNA polymerase III su 97.8 0.00015 3.2E-09 90.3 12.9 195 183-383 13-222 (397)
118 PRK14969 DNA polymerase III su 97.8 0.0002 4.2E-09 91.8 14.0 177 183-383 13-214 (527)
119 PRK05896 DNA polymerase III su 97.8 7.7E-05 1.7E-09 94.3 9.8 188 182-383 12-214 (605)
120 TIGR02397 dnaX_nterm DNA polym 97.7 0.00029 6.2E-09 87.5 14.9 179 183-385 11-214 (355)
121 PF13401 AAA_22: AAA domain; P 97.7 5.3E-05 1.1E-09 78.9 6.9 115 999-1115 4-125 (131)
122 PRK03992 proteasome-activating 97.7 0.00024 5.2E-09 88.0 13.7 154 185-360 130-317 (389)
123 PRK08084 DNA replication initi 97.7 0.00022 4.9E-09 82.0 12.5 164 186-382 22-202 (235)
124 TIGR02903 spore_lon_C ATP-depe 97.7 0.00037 8E-09 91.1 15.5 199 979-1178 155-397 (615)
125 PRK05564 DNA polymerase III su 97.7 0.00064 1.4E-08 82.2 16.5 173 980-1174 6-188 (313)
126 PRK05642 DNA replication initi 97.7 0.0004 8.7E-09 79.8 13.6 143 209-382 45-201 (234)
127 PRK09087 hypothetical protein; 97.7 0.00024 5.2E-09 80.8 11.6 137 209-387 44-193 (226)
128 cd01128 rho_factor Transcripti 97.7 6.7E-05 1.5E-09 85.9 7.1 81 708-789 15-114 (249)
129 cd00009 AAA The AAA+ (ATPases 97.7 0.0002 4.3E-09 76.1 10.1 122 982-1117 2-131 (151)
130 TIGR03689 pup_AAA proteasome A 97.7 0.00031 6.8E-09 88.0 13.0 161 184-358 180-378 (512)
131 PRK09376 rho transcription ter 97.6 4.8E-05 1E-09 90.1 5.4 79 709-788 169-266 (416)
132 PRK14970 DNA polymerase III su 97.6 0.00061 1.3E-08 84.6 15.4 178 183-383 14-203 (367)
133 PRK14952 DNA polymerase III su 97.6 0.00056 1.2E-08 87.7 15.1 189 183-383 10-213 (584)
134 COG1474 CDC6 Cdc6-related prot 97.6 0.0012 2.5E-08 80.3 17.2 191 184-381 15-229 (366)
135 PRK07764 DNA polymerase III su 97.6 0.00073 1.6E-08 90.1 16.7 185 184-383 13-215 (824)
136 PF00308 Bac_DnaA: Bacterial d 97.6 0.00068 1.5E-08 76.9 14.1 174 186-381 8-200 (219)
137 PRK09111 DNA polymerase III su 97.6 0.0006 1.3E-08 87.9 14.5 190 183-384 21-228 (598)
138 PRK04195 replication factor C 97.6 0.002 4.3E-08 82.6 19.3 181 977-1181 13-207 (482)
139 PHA02544 44 clamp loader, smal 97.6 0.00039 8.5E-09 84.6 12.2 150 182-356 17-171 (316)
140 PRK14087 dnaA chromosomal repl 97.6 0.00061 1.3E-08 85.6 14.0 161 209-387 141-317 (450)
141 PRK14954 DNA polymerase III su 97.6 0.00069 1.5E-08 87.5 14.6 193 183-383 13-222 (620)
142 PRK09087 hypothetical protein; 97.6 0.00069 1.5E-08 77.1 13.0 138 999-1175 44-194 (226)
143 TIGR02881 spore_V_K stage V sp 97.6 0.00058 1.3E-08 80.2 12.9 151 187-359 7-192 (261)
144 PRK15386 type III secretion pr 97.5 0.00012 2.7E-09 87.8 7.1 112 1372-1503 49-167 (426)
145 PRK06305 DNA polymerase III su 97.5 0.001 2.2E-08 83.6 15.6 179 183-383 14-216 (451)
146 PRK07003 DNA polymerase III su 97.5 0.0025 5.5E-08 81.6 18.7 193 976-1176 14-221 (830)
147 PRK07133 DNA polymerase III su 97.5 0.00075 1.6E-08 87.3 14.4 184 183-383 15-213 (725)
148 PTZ00112 origin recognition co 97.5 0.0012 2.6E-08 84.5 15.7 166 980-1148 757-951 (1164)
149 PRK15386 type III secretion pr 97.5 0.00011 2.4E-09 88.1 6.4 32 1774-1806 156-187 (426)
150 PRK14959 DNA polymerase III su 97.5 0.00075 1.6E-08 86.0 13.9 187 183-383 13-214 (624)
151 PRK14949 DNA polymerase III su 97.5 0.00089 1.9E-08 87.4 14.7 183 976-1176 14-220 (944)
152 KOG1859 Leucine-rich repeat pr 97.5 9.2E-06 2E-10 99.3 -3.0 107 1419-1539 184-291 (1096)
153 PRK14088 dnaA chromosomal repl 97.5 0.00084 1.8E-08 84.4 14.2 152 209-381 130-297 (440)
154 PRK13341 recombination factor 97.5 0.00033 7.1E-09 92.2 10.7 168 977-1171 27-212 (725)
155 PRK08451 DNA polymerase III su 97.5 0.0011 2.3E-08 83.8 14.7 180 183-383 11-212 (535)
156 PRK05707 DNA polymerase III su 97.5 0.0017 3.6E-08 78.1 15.5 91 290-386 106-200 (328)
157 PRK14963 DNA polymerase III su 97.5 0.00026 5.5E-09 89.8 8.9 186 978-1173 14-214 (504)
158 TIGR00767 rho transcription te 97.5 0.00038 8.2E-09 83.2 9.6 90 999-1089 168-266 (415)
159 PLN03025 replication factor C 97.5 0.0014 3E-08 79.4 14.8 180 977-1172 12-196 (319)
160 PRK12402 replication factor C 97.5 0.0013 2.7E-08 81.1 14.7 195 979-1175 16-225 (337)
161 TIGR02903 spore_lon_C ATP-depe 97.4 0.00046 9.9E-09 90.2 10.9 174 182-358 150-366 (615)
162 PRK14953 DNA polymerase III su 97.4 0.0016 3.4E-08 82.6 15.0 188 183-384 13-215 (486)
163 COG3903 Predicted ATPase [Gene 97.4 0.00034 7.4E-09 82.5 8.3 286 999-1302 14-312 (414)
164 PRK08727 hypothetical protein; 97.4 0.001 2.2E-08 76.5 12.0 148 998-1173 40-201 (233)
165 TIGR02639 ClpA ATP-dependent C 97.4 0.00075 1.6E-08 90.8 12.7 170 165-358 164-358 (731)
166 COG1222 RPT1 ATP-dependent 26S 97.4 0.0023 5E-08 73.7 14.3 152 186-360 151-337 (406)
167 PF08937 DUF1863: MTH538 TIR-l 97.4 0.00023 4.9E-09 73.6 5.8 88 16-108 1-106 (130)
168 TIGR00362 DnaA chromosomal rep 97.4 0.0014 3.1E-08 82.3 14.1 155 209-385 136-306 (405)
169 PRK12323 DNA polymerase III su 97.4 0.0018 3.8E-08 81.9 14.5 194 976-1175 14-224 (700)
170 PRK14971 DNA polymerase III su 97.4 0.0018 3.8E-08 84.4 15.0 175 184-383 15-216 (614)
171 PRK14950 DNA polymerase III su 97.4 0.0018 3.9E-08 84.7 15.1 191 183-384 13-216 (585)
172 PRK06620 hypothetical protein; 97.4 0.00081 1.8E-08 75.8 10.3 128 210-381 45-181 (214)
173 PRK00149 dnaA chromosomal repl 97.4 0.0013 2.8E-08 83.7 13.5 176 185-382 121-315 (450)
174 PRK08084 DNA replication initi 97.4 0.00087 1.9E-08 77.1 10.8 163 986-1176 32-209 (235)
175 PRK14961 DNA polymerase III su 97.4 0.0031 6.7E-08 77.7 16.3 189 977-1174 15-218 (363)
176 TIGR00767 rho transcription te 97.3 0.00041 8.9E-09 82.9 7.9 92 209-302 168-267 (415)
177 KOG3665 ZYG-1-like serine/thre 97.3 8.7E-05 1.9E-09 97.1 2.5 138 1422-1571 122-263 (699)
178 PRK14960 DNA polymerase III su 97.3 0.0022 4.8E-08 81.4 14.5 191 976-1174 13-217 (702)
179 COG1474 CDC6 Cdc6-related prot 97.3 0.008 1.7E-07 73.2 18.9 192 980-1176 19-238 (366)
180 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0014 3.1E-08 88.6 13.8 166 165-357 169-362 (852)
181 PRK14957 DNA polymerase III su 97.3 0.0031 6.7E-08 80.2 15.8 177 976-1171 14-215 (546)
182 KOG4579 Leucine-rich repeat (L 97.3 2.8E-05 6E-10 76.4 -1.8 92 1394-1487 50-141 (177)
183 PRK05563 DNA polymerase III su 97.3 0.003 6.6E-08 81.6 15.9 188 183-384 13-215 (559)
184 TIGR02880 cbbX_cfxQ probable R 97.3 0.003 6.4E-08 74.8 14.5 128 211-358 60-208 (284)
185 PTZ00361 26 proteosome regulat 97.3 0.0009 2E-08 82.8 10.4 154 184-359 181-368 (438)
186 PRK06647 DNA polymerase III su 97.3 0.0025 5.4E-08 82.0 14.5 187 183-383 13-214 (563)
187 PTZ00202 tuzin; Provisional 97.3 0.0023 5E-08 76.2 12.7 161 976-1145 260-433 (550)
188 PRK14948 DNA polymerase III su 97.3 0.0029 6.2E-08 82.4 14.9 191 183-384 13-217 (620)
189 PTZ00454 26S protease regulato 97.2 0.0024 5.3E-08 78.6 13.5 153 184-358 143-329 (398)
190 PF13191 AAA_16: AAA ATPase do 97.2 0.00052 1.1E-08 76.3 7.1 47 980-1026 2-51 (185)
191 PRK00440 rfc replication facto 97.2 0.005 1.1E-07 75.2 16.2 177 979-1173 18-200 (319)
192 PRK12422 chromosomal replicati 97.2 0.0022 4.8E-08 80.3 13.0 130 209-358 141-284 (445)
193 KOG0989 Replication factor C, 97.2 0.0021 4.5E-08 72.5 11.1 179 182-382 32-223 (346)
194 PRK06645 DNA polymerase III su 97.2 0.0051 1.1E-07 77.8 16.0 192 976-1172 19-225 (507)
195 TIGR01242 26Sp45 26S proteasom 97.2 0.0043 9.3E-08 76.8 15.3 149 999-1170 156-328 (364)
196 PRK14965 DNA polymerase III su 97.2 0.0028 6.1E-08 82.4 13.6 184 183-383 13-214 (576)
197 PRK14956 DNA polymerase III su 97.2 0.0033 7.1E-08 77.8 13.2 188 976-1171 16-217 (484)
198 PRK14962 DNA polymerase III su 97.2 0.005 1.1E-07 77.6 15.1 184 977-1178 13-221 (472)
199 KOG2120 SCF ubiquitin ligase, 97.2 6.5E-05 1.4E-09 83.1 -1.4 140 1661-1809 233-376 (419)
200 PF12799 LRR_4: Leucine Rich r 97.1 0.00045 9.7E-09 55.7 3.6 35 1423-1457 2-36 (44)
201 PF05496 RuvB_N: Holliday junc 97.1 0.0091 2E-07 65.8 14.5 170 975-1173 21-218 (233)
202 PRK07994 DNA polymerase III su 97.1 0.0048 1E-07 79.7 14.3 193 976-1176 14-220 (647)
203 KOG0531 Protein phosphatase 1, 97.1 0.0001 2.3E-09 92.8 -0.6 118 1378-1500 75-194 (414)
204 PF12799 LRR_4: Leucine Rich r 97.1 0.00044 9.5E-09 55.7 3.2 40 1445-1485 1-40 (44)
205 CHL00181 cbbX CbbX; Provisiona 97.1 0.012 2.5E-07 69.7 16.3 128 211-358 61-209 (287)
206 PRK14086 dnaA chromosomal repl 97.1 0.0042 9.1E-08 79.0 13.2 131 209-359 314-460 (617)
207 TIGR00678 holB DNA polymerase 97.1 0.0052 1.1E-07 68.3 12.6 88 1077-1171 95-186 (188)
208 CHL00095 clpC Clp protease ATP 97.0 0.0031 6.7E-08 86.0 12.6 170 164-356 160-352 (821)
209 PRK10865 protein disaggregatio 97.0 0.0051 1.1E-07 83.7 14.4 66 165-235 160-225 (857)
210 PF14516 AAA_35: AAA-like doma 97.0 0.011 2.4E-07 71.7 15.8 204 182-396 7-246 (331)
211 KOG1909 Ran GTPase-activating 97.0 0.00017 3.6E-09 82.3 0.0 204 1348-1570 74-310 (382)
212 PRK07399 DNA polymerase III su 97.0 0.012 2.5E-07 70.5 15.5 243 186-444 4-275 (314)
213 PRK14955 DNA polymerase III su 97.0 0.0048 1E-07 77.0 12.8 195 977-1173 15-225 (397)
214 PRK14958 DNA polymerase III su 97.0 0.0075 1.6E-07 77.0 14.7 180 976-1173 14-217 (509)
215 PF05621 TniB: Bacterial TniB 97.0 0.011 2.4E-07 68.2 14.5 193 186-383 34-255 (302)
216 PRK07940 DNA polymerase III su 97.0 0.0091 2E-07 73.5 14.8 93 1077-1175 116-212 (394)
217 COG3899 Predicted ATPase [Gene 97.0 0.014 3.1E-07 79.2 18.0 302 981-1303 3-385 (849)
218 PRK14087 dnaA chromosomal repl 97.0 0.0039 8.4E-08 78.5 11.8 166 1000-1179 142-322 (450)
219 CHL00176 ftsH cell division pr 97.0 0.0049 1.1E-07 80.3 13.0 153 185-359 182-367 (638)
220 PRK08116 hypothetical protein; 97.0 0.0034 7.3E-08 73.5 10.5 101 210-327 115-220 (268)
221 PRK08691 DNA polymerase III su 97.0 0.0071 1.5E-07 77.7 13.9 180 976-1174 14-218 (709)
222 PF00004 AAA: ATPase family as 97.0 0.0048 1E-07 64.1 10.5 23 212-234 1-23 (132)
223 PRK08769 DNA polymerase III su 96.9 0.02 4.4E-07 68.1 16.8 91 289-387 112-206 (319)
224 KOG2120 SCF ubiquitin ligase, 96.9 6.3E-05 1.4E-09 83.2 -3.8 118 1658-1785 256-374 (419)
225 PF05621 TniB: Bacterial TniB 96.9 0.016 3.4E-07 67.1 15.1 187 986-1173 45-258 (302)
226 KOG1644 U2-associated snRNP A' 96.9 0.0014 3.1E-08 69.4 5.9 104 1376-1502 43-150 (233)
227 PRK05642 DNA replication initi 96.9 0.003 6.5E-08 72.6 9.2 149 1000-1176 46-208 (234)
228 PRK09112 DNA polymerase III su 96.9 0.0093 2E-07 72.4 13.8 192 978-1176 23-240 (351)
229 PF00308 Bac_DnaA: Bacterial d 96.9 0.0066 1.4E-07 68.9 11.6 157 998-1171 33-203 (219)
230 TIGR01241 FtsH_fam ATP-depende 96.9 0.0079 1.7E-07 77.6 13.7 173 184-381 53-258 (495)
231 PRK14951 DNA polymerase III su 96.9 0.015 3.3E-07 75.0 16.0 193 976-1173 14-222 (618)
232 PRK08058 DNA polymerase III su 96.9 0.021 4.6E-07 69.2 16.5 150 187-357 6-181 (329)
233 TIGR02397 dnaX_nterm DNA polym 96.8 0.019 4E-07 71.3 16.3 182 977-1177 13-219 (355)
234 PRK14964 DNA polymerase III su 96.8 0.015 3.2E-07 73.0 15.0 178 977-1172 12-213 (491)
235 PRK07471 DNA polymerase III su 96.8 0.017 3.7E-07 70.6 15.0 193 978-1176 19-238 (365)
236 TIGR03346 chaperone_ClpB ATP-d 96.8 0.007 1.5E-07 82.9 13.0 67 165-236 155-221 (852)
237 PRK11034 clpA ATP-dependent Cl 96.8 0.0045 9.8E-08 82.1 10.7 65 165-234 168-232 (758)
238 PRK06090 DNA polymerase III su 96.8 0.032 7E-07 66.4 16.7 107 289-408 107-217 (319)
239 KOG1859 Leucine-rich repeat pr 96.8 4.5E-05 9.7E-10 93.6 -7.2 123 1373-1501 162-288 (1096)
240 PRK05896 DNA polymerase III su 96.8 0.0063 1.4E-07 77.4 11.1 187 977-1171 15-215 (605)
241 KOG2227 Pre-initiation complex 96.8 0.04 8.8E-07 66.0 16.8 200 980-1180 152-376 (529)
242 PRK14969 DNA polymerase III su 96.7 0.014 3E-07 75.1 14.4 177 977-1171 15-215 (527)
243 PRK08903 DnaA regulatory inact 96.7 0.0071 1.5E-07 69.6 10.6 152 998-1181 41-204 (227)
244 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0032 6.9E-08 72.4 7.5 90 210-301 70-174 (274)
245 smart00382 AAA ATPases associa 96.7 0.0045 9.7E-08 65.1 8.3 35 210-244 3-37 (148)
246 PRK07993 DNA polymerase III su 96.7 0.027 5.8E-07 68.0 15.7 89 289-384 107-199 (334)
247 COG1373 Predicted ATPase (AAA+ 96.7 0.016 3.5E-07 71.9 14.0 164 193-390 24-193 (398)
248 KOG2543 Origin recognition com 96.7 0.008 1.7E-07 69.9 10.2 159 980-1144 8-191 (438)
249 KOG2982 Uncharacterized conser 96.7 0.0007 1.5E-08 75.2 1.5 80 1417-1499 66-153 (418)
250 PRK14959 DNA polymerase III su 96.6 0.022 4.7E-07 73.1 14.7 194 978-1180 16-225 (624)
251 TIGR02880 cbbX_cfxQ probable R 96.6 0.012 2.7E-07 69.5 11.5 131 1001-1147 60-209 (284)
252 PRK07764 DNA polymerase III su 96.6 0.024 5.2E-07 76.0 15.3 189 977-1173 14-218 (824)
253 PRK09111 DNA polymerase III su 96.6 0.026 5.7E-07 73.1 15.2 196 975-1175 21-232 (598)
254 TIGR03345 VI_ClpV1 type VI sec 96.6 0.015 3.2E-07 79.0 13.6 151 979-1146 188-363 (852)
255 COG1373 Predicted ATPase (AAA+ 96.6 0.021 4.6E-07 70.9 13.9 134 985-1142 24-163 (398)
256 PRK08181 transposase; Validate 96.6 0.0076 1.6E-07 70.1 9.2 35 210-244 107-141 (269)
257 PRK12377 putative replication 96.6 0.0097 2.1E-07 68.3 9.9 36 209-244 101-136 (248)
258 PRK14954 DNA polymerase III su 96.6 0.026 5.6E-07 73.3 14.8 195 976-1171 14-223 (620)
259 TIGR00602 rad24 checkpoint pro 96.5 0.0082 1.8E-07 77.6 10.2 53 182-234 80-135 (637)
260 PRK06620 hypothetical protein; 96.5 0.01 2.2E-07 67.0 9.9 131 1000-1171 45-184 (214)
261 PRK14950 DNA polymerase III su 96.5 0.013 2.8E-07 76.8 12.3 192 978-1177 16-222 (585)
262 PLN00020 ribulose bisphosphate 96.5 0.027 5.9E-07 66.5 13.2 31 207-237 146-176 (413)
263 CHL00195 ycf46 Ycf46; Provisio 96.5 0.015 3.2E-07 73.4 12.1 153 186-360 228-407 (489)
264 KOG0731 AAA+-type ATPase conta 96.5 0.027 5.8E-07 72.6 14.3 177 185-385 310-520 (774)
265 PF13177 DNA_pol3_delta2: DNA 96.5 0.02 4.3E-07 61.7 11.4 138 190-346 1-162 (162)
266 KOG2227 Pre-initiation complex 96.5 0.046 9.9E-07 65.6 15.0 171 184-358 148-338 (529)
267 KOG3665 ZYG-1-like serine/thre 96.5 0.0019 4.2E-08 84.7 4.3 106 1395-1501 146-259 (699)
268 KOG2543 Origin recognition com 96.5 0.0096 2.1E-07 69.3 9.2 163 185-357 5-192 (438)
269 PRK14970 DNA polymerase III su 96.5 0.043 9.3E-07 68.2 15.9 178 977-1172 16-205 (367)
270 PRK06871 DNA polymerase III su 96.5 0.064 1.4E-06 64.1 16.4 89 289-384 106-198 (325)
271 COG0593 DnaA ATPase involved i 96.5 0.025 5.5E-07 68.6 13.0 132 208-358 112-257 (408)
272 PRK07952 DNA replication prote 96.5 0.053 1.2E-06 62.1 15.1 49 195-243 85-133 (244)
273 PRK11331 5-methylcytosine-spec 96.5 0.0075 1.6E-07 73.7 8.6 71 682-760 175-245 (459)
274 TIGR01243 CDC48 AAA family ATP 96.5 0.015 3.2E-07 78.8 12.5 52 185-236 177-239 (733)
275 KOG4579 Leucine-rich repeat (L 96.4 0.00053 1.1E-08 67.7 -1.2 80 1419-1499 50-130 (177)
276 TIGR03689 pup_AAA proteasome A 96.4 0.045 9.8E-07 69.1 15.4 140 999-1148 216-380 (512)
277 TIGR01243 CDC48 AAA family ATP 96.4 0.023 4.9E-07 77.1 13.8 151 186-358 453-635 (733)
278 PRK10536 hypothetical protein; 96.4 0.013 2.9E-07 66.3 9.5 136 186-329 55-214 (262)
279 PRK08451 DNA polymerase III su 96.4 0.056 1.2E-06 68.6 16.1 191 976-1176 12-218 (535)
280 PRK03992 proteasome-activating 96.4 0.025 5.4E-07 70.3 12.9 147 999-1170 165-337 (389)
281 PRK14088 dnaA chromosomal repl 96.4 0.018 4E-07 72.5 11.9 156 999-1171 130-300 (440)
282 PHA02544 44 clamp loader, smal 96.4 0.021 4.6E-07 69.4 12.2 146 977-1144 20-171 (316)
283 TIGR02639 ClpA ATP-dependent C 96.4 0.014 3.1E-07 78.7 11.6 149 979-1146 183-358 (731)
284 CHL00181 cbbX CbbX; Provisiona 96.4 0.062 1.3E-06 63.6 15.5 131 1001-1147 61-210 (287)
285 COG2255 RuvB Holliday junction 96.4 0.021 4.5E-07 64.0 10.5 171 182-384 22-218 (332)
286 TIGR02881 spore_V_K stage V sp 96.4 0.015 3.3E-07 68.3 10.4 131 999-1147 42-192 (261)
287 PRK14952 DNA polymerase III su 96.4 0.06 1.3E-06 69.5 16.3 194 977-1178 12-222 (584)
288 PRK09183 transposase/IS protei 96.3 0.011 2.5E-07 68.8 9.0 26 210-235 103-128 (259)
289 KOG0730 AAA+-type ATPase [Post 96.3 0.022 4.8E-07 71.0 11.7 148 190-359 438-616 (693)
290 PF08357 SEFIR: SEFIR domain; 96.3 0.0039 8.5E-08 66.4 4.7 64 17-80 2-70 (150)
291 PRK06921 hypothetical protein; 96.3 0.0064 1.4E-07 71.0 6.8 36 209-244 117-153 (266)
292 TIGR02640 gas_vesic_GvpN gas v 96.3 0.069 1.5E-06 62.6 15.4 24 211-234 23-46 (262)
293 TIGR00362 DnaA chromosomal rep 96.3 0.025 5.3E-07 71.2 12.4 156 1000-1172 137-306 (405)
294 PRK06305 DNA polymerase III su 96.3 0.074 1.6E-06 67.2 16.3 175 977-1171 16-217 (451)
295 KOG0989 Replication factor C, 96.3 0.021 4.5E-07 64.8 10.0 185 974-1170 32-224 (346)
296 PRK14086 dnaA chromosomal repl 96.3 0.044 9.4E-07 70.0 14.2 154 1000-1170 315-482 (617)
297 PF05673 DUF815: Protein of un 96.3 0.023 5E-07 63.6 10.3 55 182-236 23-79 (249)
298 TIGR03346 chaperone_ClpB ATP-d 96.3 0.032 6.8E-07 76.6 14.0 132 186-327 565-717 (852)
299 smart00382 AAA ATPases associa 96.2 0.013 2.7E-07 61.6 8.1 89 1000-1092 3-92 (148)
300 KOG0744 AAA+-type ATPase [Post 96.2 0.018 3.9E-07 65.3 9.3 36 209-244 177-216 (423)
301 CHL00176 ftsH cell division pr 96.2 0.042 9.2E-07 71.8 14.3 172 976-1169 184-387 (638)
302 PRK14953 DNA polymerase III su 96.2 0.1 2.2E-06 66.4 17.2 182 976-1176 14-220 (486)
303 PRK11331 5-methylcytosine-spec 96.2 0.011 2.3E-07 72.4 8.1 104 981-1089 178-283 (459)
304 PRK08699 DNA polymerase III su 96.2 0.14 3E-06 61.7 17.4 85 291-385 114-202 (325)
305 PF04665 Pox_A32: Poxvirus A32 96.2 0.0058 1.3E-07 68.9 5.3 34 210-243 14-47 (241)
306 PRK06526 transposase; Provisio 96.2 0.0085 1.8E-07 69.3 6.7 27 210-236 99-125 (254)
307 PRK00149 dnaA chromosomal repl 96.1 0.032 7E-07 71.1 12.3 156 999-1173 148-319 (450)
308 PRK12422 chromosomal replicati 96.1 0.086 1.9E-06 66.4 15.8 150 1000-1168 142-305 (445)
309 KOG0741 AAA+-type ATPase [Post 96.1 0.028 6E-07 67.7 10.5 126 207-357 536-685 (744)
310 PRK14948 DNA polymerase III su 96.1 0.085 1.8E-06 69.0 16.0 193 977-1176 15-222 (620)
311 COG0542 clpA ATP-binding subun 96.1 0.027 5.7E-07 73.3 11.0 119 186-314 491-619 (786)
312 PRK14971 DNA polymerase III su 96.1 0.098 2.1E-06 68.5 16.4 179 976-1173 15-219 (614)
313 KOG1909 Ran GTPase-activating 96.0 0.003 6.6E-08 72.4 2.1 128 1375-1502 157-308 (382)
314 PRK10865 protein disaggregatio 96.0 0.03 6.5E-07 76.4 11.9 119 185-313 567-695 (857)
315 COG1223 Predicted ATPase (AAA+ 96.0 0.033 7.1E-07 61.2 9.7 172 186-382 121-318 (368)
316 PF01695 IstB_IS21: IstB-like 96.0 0.012 2.6E-07 64.3 6.6 35 210-244 48-82 (178)
317 KOG0733 Nuclear AAA ATPase (VC 96.0 0.065 1.4E-06 66.0 13.0 95 185-301 189-293 (802)
318 KOG0728 26S proteasome regulat 96.0 0.13 2.7E-06 56.2 13.7 150 187-358 147-331 (404)
319 PRK08118 topology modulation p 96.0 0.0032 6.9E-08 68.2 1.9 35 1000-1034 2-37 (167)
320 PRK07133 DNA polymerase III su 96.0 0.11 2.3E-06 68.0 15.7 188 977-1173 17-216 (725)
321 PRK12608 transcription termina 96.0 0.023 4.9E-07 68.1 8.9 102 197-301 122-231 (380)
322 PRK06647 DNA polymerase III su 95.9 0.15 3.4E-06 65.9 17.0 191 976-1174 14-218 (563)
323 PF14516 AAA_35: AAA-like doma 95.9 0.23 4.9E-06 60.4 17.7 188 987-1182 20-245 (331)
324 PRK13531 regulatory ATPase Rav 95.9 0.061 1.3E-06 66.6 12.6 46 186-235 20-65 (498)
325 KOG0733 Nuclear AAA ATPase (VC 95.9 0.053 1.2E-06 66.7 11.7 129 209-359 545-693 (802)
326 PF00004 AAA: ATPase family as 95.9 0.016 3.4E-07 60.2 6.6 21 1002-1022 1-21 (132)
327 PRK10536 hypothetical protein; 95.9 0.025 5.5E-07 64.1 8.5 52 980-1033 57-108 (262)
328 KOG2739 Leucine-rich acidic nu 95.9 0.0037 8E-08 69.5 1.7 105 1421-1534 42-150 (260)
329 CHL00095 clpC Clp protease ATP 95.8 0.033 7.2E-07 76.1 11.1 132 186-327 509-661 (821)
330 COG2812 DnaX DNA polymerase II 95.8 0.043 9.4E-07 68.7 11.0 178 184-381 14-212 (515)
331 KOG1644 U2-associated snRNP A' 95.8 0.013 2.7E-07 62.5 5.1 107 1421-1536 41-149 (233)
332 COG0593 DnaA ATPase involved i 95.8 0.14 3E-06 62.4 14.6 129 998-1147 112-258 (408)
333 KOG0531 Protein phosphatase 1, 95.7 0.0037 8E-08 78.9 1.2 109 1371-1484 91-201 (414)
334 PTZ00454 26S protease regulato 95.7 0.14 2.9E-06 63.5 14.7 148 999-1170 179-351 (398)
335 TIGR01241 FtsH_fam ATP-depende 95.7 0.1 2.2E-06 67.4 14.2 149 1000-1170 89-260 (495)
336 TIGR00602 rad24 checkpoint pro 95.6 0.036 7.8E-07 71.8 9.6 47 975-1021 81-132 (637)
337 COG3267 ExeA Type II secretory 95.6 0.14 3.1E-06 57.1 12.7 178 207-390 49-246 (269)
338 KOG0735 AAA+-type ATPase [Post 95.6 0.12 2.6E-06 64.8 13.3 73 209-300 431-504 (952)
339 cd01394 radB RadB. The archaea 95.6 0.044 9.6E-07 62.6 9.5 50 195-244 5-54 (218)
340 PRK06964 DNA polymerase III su 95.6 0.14 3E-06 61.7 13.9 88 289-386 131-222 (342)
341 COG0470 HolB ATPase involved i 95.6 0.069 1.5E-06 65.3 11.7 146 187-350 2-173 (325)
342 PRK06835 DNA replication prote 95.6 0.058 1.3E-06 64.8 10.4 35 210-244 184-218 (329)
343 PRK09361 radB DNA repair and r 95.5 0.046 1E-06 62.8 9.3 50 196-245 10-59 (225)
344 KOG0729 26S proteasome regulat 95.5 0.081 1.7E-06 58.1 10.2 102 207-331 209-329 (435)
345 PTZ00361 26 proteosome regulat 95.5 0.048 1E-06 67.8 9.9 131 999-1149 217-370 (438)
346 KOG0741 AAA+-type ATPase [Post 95.5 0.1 2.2E-06 63.1 12.0 148 998-1166 537-704 (744)
347 PF04665 Pox_A32: Poxvirus A32 95.5 0.09 2E-06 59.5 11.1 35 710-746 14-48 (241)
348 PRK08118 topology modulation p 95.5 0.0064 1.4E-07 65.8 1.9 34 711-744 3-37 (167)
349 PF05673 DUF815: Protein of un 95.5 0.39 8.6E-06 54.0 15.7 121 975-1120 27-155 (249)
350 PRK14974 cell division protein 95.5 0.094 2E-06 63.0 11.7 29 208-236 139-167 (336)
351 COG3267 ExeA Type II secretory 95.5 0.35 7.6E-06 54.1 14.9 175 996-1178 48-247 (269)
352 KOG0734 AAA+-type ATPase conta 95.4 0.063 1.4E-06 64.8 9.8 116 186-323 304-442 (752)
353 KOG2982 Uncharacterized conser 95.4 0.0045 9.8E-08 69.0 0.4 92 1690-1790 173-265 (418)
354 PF02562 PhoH: PhoH-like prote 95.4 0.029 6.3E-07 62.0 6.5 126 193-329 7-157 (205)
355 cd01131 PilT Pilus retraction 95.4 0.041 9E-07 61.5 7.9 110 210-331 2-112 (198)
356 KOG2228 Origin recognition com 95.4 0.18 3.9E-06 58.1 12.6 173 184-357 22-218 (408)
357 PRK08939 primosomal protein Dn 95.4 0.081 1.8E-06 63.1 10.6 98 209-326 156-259 (306)
358 PRK04132 replication factor C 95.3 0.12 2.5E-06 69.1 12.9 148 217-384 574-726 (846)
359 PF13207 AAA_17: AAA domain; P 95.3 0.014 3E-07 59.7 3.5 23 211-233 1-23 (121)
360 TIGR02237 recomb_radB DNA repa 95.3 0.054 1.2E-06 61.4 8.5 45 201-245 4-48 (209)
361 cd01120 RecA-like_NTPases RecA 95.2 0.084 1.8E-06 57.0 9.7 34 211-244 1-34 (165)
362 smart00763 AAA_PrkA PrkA AAA d 95.2 0.014 3.1E-07 69.5 3.7 49 186-234 51-103 (361)
363 PF00448 SRP54: SRP54-type pro 95.2 0.062 1.3E-06 59.7 8.4 36 209-244 1-36 (196)
364 PF10443 RNA12: RNA12 protein; 95.2 0.56 1.2E-05 57.0 16.7 66 290-359 148-230 (431)
365 PRK07399 DNA polymerase III su 95.1 0.25 5.5E-06 59.2 14.0 192 979-1175 5-220 (314)
366 PRK07261 topology modulation p 95.1 0.046 1E-06 59.5 7.2 21 1001-1021 2-22 (171)
367 PRK07261 topology modulation p 95.1 0.064 1.4E-06 58.4 8.2 23 211-233 2-24 (171)
368 PRK12608 transcription termina 95.1 0.077 1.7E-06 63.7 9.3 99 990-1089 123-231 (380)
369 PRK14965 DNA polymerase III su 95.1 0.19 4.2E-06 65.6 13.9 191 977-1176 15-221 (576)
370 COG1618 Predicted nucleotide k 95.1 0.02 4.4E-07 58.8 3.8 31 209-239 5-36 (179)
371 cd01121 Sms Sms (bacterial rad 95.1 0.075 1.6E-06 65.0 9.4 50 195-244 68-117 (372)
372 PRK04296 thymidine kinase; Pro 95.1 0.039 8.4E-07 61.3 6.4 111 210-329 3-117 (190)
373 COG2607 Predicted ATPase (AAA+ 95.0 0.22 4.8E-06 54.8 11.5 58 182-239 56-115 (287)
374 PRK05707 DNA polymerase III su 95.0 0.23 5E-06 59.9 13.3 95 1077-1176 105-203 (328)
375 PRK00771 signal recognition pa 95.0 0.37 8.1E-06 60.1 15.3 29 208-236 94-122 (437)
376 PF14532 Sigma54_activ_2: Sigm 95.0 0.02 4.4E-07 59.9 3.8 45 189-233 1-45 (138)
377 KOG2739 Leucine-rich acidic nu 95.0 0.014 2.9E-07 65.1 2.5 39 1466-1504 113-155 (260)
378 KOG0727 26S proteasome regulat 95.0 0.39 8.5E-06 52.6 13.2 149 187-357 156-338 (408)
379 TIGR02902 spore_lonB ATP-depen 95.0 0.11 2.4E-06 67.2 11.0 46 185-232 64-109 (531)
380 PRK11034 clpA ATP-dependent Cl 94.9 0.098 2.1E-06 69.8 10.6 151 979-1146 187-362 (758)
381 PHA00729 NTP-binding motif con 94.9 0.054 1.2E-06 60.5 6.9 86 212-326 20-126 (226)
382 PRK10787 DNA-binding ATP-depen 94.9 0.2 4.4E-06 67.5 13.6 52 186-237 322-377 (784)
383 COG1066 Sms Predicted ATP-depe 94.9 0.11 2.4E-06 61.6 9.6 99 194-300 78-178 (456)
384 PF13671 AAA_33: AAA domain; P 94.9 0.12 2.5E-06 54.6 9.3 24 211-234 1-24 (143)
385 COG0542 clpA ATP-binding subun 94.9 0.098 2.1E-06 68.2 10.0 153 185-356 169-344 (786)
386 PRK05541 adenylylsulfate kinas 94.9 0.054 1.2E-06 59.5 6.8 36 209-244 7-42 (176)
387 COG1484 DnaC DNA replication p 94.9 0.072 1.6E-06 61.8 8.1 36 208-243 104-139 (254)
388 PRK12724 flagellar biosynthesi 94.9 0.28 6.1E-06 59.9 13.2 25 209-233 223-247 (432)
389 PRK05563 DNA polymerase III su 94.8 0.43 9.3E-06 62.1 15.9 188 977-1173 15-217 (559)
390 TIGR00064 ftsY signal recognit 94.8 0.096 2.1E-06 61.4 9.1 29 208-236 71-99 (272)
391 PRK08116 hypothetical protein; 94.8 0.058 1.3E-06 63.2 7.3 100 712-819 117-221 (268)
392 PRK10733 hflB ATP-dependent me 94.8 0.11 2.3E-06 69.0 10.6 127 210-358 186-335 (644)
393 KOG0735 AAA+-type ATPase [Post 94.7 0.14 3E-06 64.3 10.2 151 1000-1169 432-608 (952)
394 PRK06696 uridine kinase; Valid 94.7 0.033 7.2E-07 63.7 4.9 45 191-235 3-48 (223)
395 KOG0736 Peroxisome assembly fa 94.7 0.57 1.2E-05 59.8 15.5 189 187-407 673-898 (953)
396 TIGR00763 lon ATP-dependent pr 94.7 0.18 3.9E-06 68.7 12.5 51 187-237 321-375 (775)
397 KOG1947 Leucine rich repeat pr 94.6 0.0065 1.4E-07 79.0 -1.7 91 1660-1753 241-331 (482)
398 PRK07667 uridine kinase; Provi 94.5 0.062 1.3E-06 59.9 6.2 41 195-235 3-43 (193)
399 PRK08181 transposase; Validate 94.5 0.75 1.6E-05 53.7 15.2 99 711-818 108-208 (269)
400 PRK11608 pspF phage shock prot 94.5 0.091 2E-06 63.7 8.0 46 186-231 6-51 (326)
401 KOG0739 AAA+-type ATPase [Post 94.4 0.6 1.3E-05 52.7 13.3 49 186-234 133-191 (439)
402 PRK11889 flhF flagellar biosyn 94.4 0.48 1E-05 57.1 13.5 29 208-236 240-268 (436)
403 KOG0726 26S proteasome regulat 94.4 0.11 2.4E-06 58.0 7.6 54 185-238 184-248 (440)
404 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.13 2.9E-06 54.2 8.1 103 209-332 26-131 (144)
405 COG0466 Lon ATP-dependent Lon 94.4 0.22 4.7E-06 63.3 10.9 157 186-358 323-508 (782)
406 TIGR00416 sms DNA repair prote 94.3 0.15 3.2E-06 64.5 9.5 52 193-244 78-129 (454)
407 cd03214 ABC_Iron-Siderophores_ 94.3 0.17 3.7E-06 55.7 9.1 122 209-331 25-161 (180)
408 TIGR02237 recomb_radB DNA repa 94.3 0.11 2.4E-06 58.9 7.8 47 999-1048 12-58 (209)
409 cd01129 PulE-GspE PulE/GspE Th 94.3 0.11 2.4E-06 60.7 8.0 103 194-311 68-170 (264)
410 KOG0731 AAA+-type ATPase conta 94.2 0.62 1.4E-05 60.6 14.8 180 972-1173 308-521 (774)
411 COG0464 SpoVK ATPases of the A 94.2 0.27 5.9E-06 63.7 12.2 130 208-359 275-424 (494)
412 PRK05703 flhF flagellar biosyn 94.2 0.48 1E-05 59.3 13.7 36 209-244 221-258 (424)
413 PRK06067 flagellar accessory p 94.1 0.26 5.6E-06 57.0 10.6 50 196-245 12-61 (234)
414 cd01124 KaiC KaiC is a circadi 94.0 0.19 4.1E-06 55.8 8.9 33 212-244 2-34 (187)
415 TIGR00959 ffh signal recogniti 94.0 0.8 1.7E-05 57.1 14.9 26 209-234 99-124 (428)
416 KOG2004 Mitochondrial ATP-depe 94.0 0.18 3.9E-06 63.4 9.0 52 186-237 411-466 (906)
417 PRK09183 transposase/IS protei 93.9 0.85 1.9E-05 53.3 14.3 100 710-818 103-205 (259)
418 KOG2035 Replication factor C, 93.9 0.8 1.7E-05 51.5 12.8 181 186-382 13-221 (351)
419 PRK10867 signal recognition pa 93.9 0.89 1.9E-05 56.7 15.0 37 208-244 99-135 (433)
420 PRK08533 flagellar accessory p 93.9 0.21 4.4E-06 57.3 8.9 47 198-244 13-59 (230)
421 PRK09361 radB DNA repair and r 93.8 0.13 2.9E-06 59.0 7.4 45 999-1046 23-67 (225)
422 COG2255 RuvB Holliday junction 93.8 2.6 5.7E-05 48.0 16.8 61 1111-1172 157-219 (332)
423 COG4608 AppF ABC-type oligopep 93.8 0.17 3.7E-06 57.5 7.8 145 209-355 39-199 (268)
424 CHL00195 ycf46 Ycf46; Provisio 93.8 0.23 5.1E-06 62.9 9.9 130 999-1148 259-407 (489)
425 KOG0651 26S proteasome regulat 93.8 0.21 4.5E-06 56.9 8.3 30 208-237 165-194 (388)
426 cd01393 recA_like RecA is a b 93.8 0.27 5.9E-06 56.5 9.8 50 196-245 6-61 (226)
427 PRK11823 DNA repair protein Ra 93.8 0.21 4.6E-06 63.1 9.5 51 194-244 65-115 (446)
428 cd00544 CobU Adenosylcobinamid 93.7 0.18 3.8E-06 54.6 7.6 31 212-245 2-32 (169)
429 PF13604 AAA_30: AAA domain; P 93.7 0.38 8.3E-06 53.7 10.5 115 195-329 7-132 (196)
430 TIGR01359 UMP_CMP_kin_fam UMP- 93.7 0.22 4.8E-06 55.1 8.6 23 211-233 1-23 (183)
431 TIGR01425 SRP54_euk signal rec 93.6 1 2.2E-05 55.8 14.7 29 208-236 99-127 (429)
432 cd03228 ABCC_MRP_Like The MRP 93.6 0.24 5.3E-06 54.0 8.6 128 209-342 28-167 (171)
433 PF13207 AAA_17: AAA domain; P 93.6 0.047 1E-06 55.7 2.8 21 1001-1021 1-21 (121)
434 PF13238 AAA_18: AAA domain; P 93.6 0.053 1.1E-06 55.9 3.2 22 212-233 1-22 (129)
435 TIGR01420 pilT_fam pilus retra 93.6 0.15 3.2E-06 62.4 7.5 108 210-329 123-231 (343)
436 PF01583 APS_kinase: Adenylyls 93.6 0.084 1.8E-06 55.6 4.6 35 210-244 3-37 (156)
437 PRK06217 hypothetical protein; 93.5 0.23 5E-06 54.9 8.2 24 211-234 3-26 (183)
438 PF07726 AAA_3: ATPase family 93.5 0.045 9.7E-07 54.9 2.3 29 212-240 2-30 (131)
439 cd00983 recA RecA is a bacter 93.5 0.19 4.2E-06 59.7 7.9 51 195-245 40-91 (325)
440 cd01393 recA_like RecA is a b 93.4 0.25 5.4E-06 56.8 8.7 90 999-1089 19-125 (226)
441 cd03216 ABC_Carb_Monos_I This 93.4 0.14 2.9E-06 55.5 6.1 116 210-332 27-146 (163)
442 PF00448 SRP54: SRP54-type pro 93.4 0.058 1.2E-06 60.0 3.2 56 1000-1057 2-58 (196)
443 PRK08769 DNA polymerase III su 93.4 1.3 2.9E-05 52.9 14.9 93 1077-1176 112-208 (319)
444 PRK15429 formate hydrogenlyase 93.4 0.29 6.4E-06 66.0 10.6 47 186-232 376-422 (686)
445 PRK09280 F0F1 ATP synthase sub 93.4 0.17 3.6E-06 62.9 7.4 90 210-301 145-249 (463)
446 KOG0991 Replication factor C, 93.4 0.13 2.8E-06 55.8 5.5 52 182-235 23-74 (333)
447 PRK12377 putative replication 93.3 0.23 5.1E-06 57.1 8.1 102 709-818 101-205 (248)
448 COG0465 HflB ATP-dependent Zn 93.3 0.39 8.4E-06 61.2 10.6 175 185-384 149-356 (596)
449 COG1875 NYN ribonuclease and A 93.3 0.46 9.9E-06 55.6 10.1 130 190-324 228-384 (436)
450 TIGR02012 tigrfam_recA protein 93.3 0.21 4.6E-06 59.4 7.9 49 196-244 41-90 (321)
451 PRK06526 transposase; Provisio 93.3 0.13 2.9E-06 59.6 6.1 100 710-818 99-200 (254)
452 cd01133 F1-ATPase_beta F1 ATP 93.3 0.16 3.5E-06 58.7 6.6 89 999-1089 69-174 (274)
453 cd03115 SRP The signal recogni 93.2 0.16 3.5E-06 55.5 6.5 26 211-236 2-27 (173)
454 PRK05541 adenylylsulfate kinas 93.2 0.12 2.5E-06 56.9 5.3 35 999-1035 7-41 (176)
455 cd00561 CobA_CobO_BtuR ATP:cor 93.2 0.41 8.9E-06 50.7 9.0 118 210-329 3-139 (159)
456 cd03223 ABCD_peroxisomal_ALDP 93.2 0.24 5.2E-06 53.7 7.7 126 209-342 27-160 (166)
457 TIGR02974 phageshock_pspF psp 93.1 0.24 5.1E-06 60.1 8.1 45 188-232 1-45 (329)
458 cd01123 Rad51_DMC1_radA Rad51_ 93.1 0.18 4E-06 58.3 7.1 49 197-245 7-61 (235)
459 PF00560 LRR_1: Leucine Rich R 93.1 0.033 7.2E-07 37.4 0.5 20 1424-1443 2-21 (22)
460 PF00485 PRK: Phosphoribulokin 93.1 0.076 1.7E-06 59.3 3.6 25 211-235 1-25 (194)
461 cd01123 Rad51_DMC1_radA Rad51_ 93.0 0.33 7.2E-06 56.2 9.0 49 999-1047 19-71 (235)
462 cd01394 radB RadB. The archaea 92.9 0.23 5E-06 56.7 7.4 42 999-1042 19-60 (218)
463 PRK05800 cobU adenosylcobinami 92.9 0.15 3.1E-06 55.4 5.4 23 211-233 3-25 (170)
464 cd03247 ABCC_cytochrome_bd The 92.9 0.53 1.1E-05 51.8 10.0 123 210-342 29-169 (178)
465 PRK09354 recA recombinase A; P 92.9 0.28 6E-06 58.9 8.1 51 195-245 45-96 (349)
466 cd01125 repA Hexameric Replica 92.9 0.51 1.1E-05 54.7 10.3 24 211-234 3-26 (239)
467 PRK12597 F0F1 ATP synthase sub 92.9 0.21 4.5E-06 62.3 7.2 90 209-301 143-248 (461)
468 TIGR03574 selen_PSTK L-seryl-t 92.8 0.16 3.4E-06 59.3 6.0 25 211-235 1-25 (249)
469 TIGR03499 FlhF flagellar biosy 92.8 0.29 6.3E-06 58.0 8.2 85 999-1086 194-280 (282)
470 PRK15455 PrkA family serine pr 92.8 0.18 3.9E-06 63.3 6.6 49 187-235 77-129 (644)
471 cd03222 ABC_RNaseL_inhibitor T 92.8 0.23 5.1E-06 54.1 6.8 116 211-344 27-147 (177)
472 PRK14722 flhF flagellar biosyn 92.8 0.79 1.7E-05 55.8 11.8 29 209-237 137-165 (374)
473 PRK05973 replicative DNA helic 92.8 0.44 9.5E-06 54.3 9.1 37 208-244 63-99 (237)
474 TIGR01039 atpD ATP synthase, F 92.7 0.23 4.9E-06 61.5 7.2 91 209-301 143-248 (461)
475 COG5238 RNA1 Ran GTPase-activa 92.7 0.077 1.7E-06 58.9 2.8 200 1421-1700 29-252 (388)
476 PRK08058 DNA polymerase III su 92.7 1.5 3.2E-05 53.3 14.3 68 1077-1144 109-180 (329)
477 TIGR01817 nifA Nif-specific re 92.7 0.36 7.8E-06 63.2 9.6 49 184-232 194-242 (534)
478 PRK12678 transcription termina 92.6 0.21 4.5E-06 62.4 6.6 91 210-302 417-515 (672)
479 TIGR02640 gas_vesic_GvpN gas v 92.6 1.7 3.7E-05 51.1 14.2 54 986-1046 10-63 (262)
480 PF00560 LRR_1: Leucine Rich R 92.6 0.047 1E-06 36.7 0.6 20 1471-1490 2-21 (22)
481 PF10443 RNA12: RNA12 protein; 92.6 0.7 1.5E-05 56.2 10.8 195 983-1187 1-289 (431)
482 PRK03839 putative kinase; Prov 92.5 0.091 2E-06 57.9 3.2 24 211-234 2-25 (180)
483 COG1484 DnaC DNA replication p 92.5 0.21 4.5E-06 58.0 6.2 75 998-1089 104-178 (254)
484 PRK05022 anaerobic nitric oxid 92.4 0.41 8.9E-06 62.0 9.6 50 184-233 185-234 (509)
485 COG0572 Udk Uridine kinase [Nu 92.4 0.12 2.7E-06 56.9 4.0 30 207-236 6-35 (218)
486 KOG0734 AAA+-type ATPase conta 92.4 0.49 1.1E-05 57.6 9.1 51 974-1024 303-362 (752)
487 PTZ00301 uridine kinase; Provi 92.4 0.1 2.2E-06 58.5 3.5 29 209-237 3-31 (210)
488 PF08423 Rad51: Rad51; InterP 92.4 0.37 8E-06 56.1 8.1 103 196-299 25-142 (256)
489 PRK12723 flagellar biosynthesi 92.4 0.89 1.9E-05 55.9 11.7 27 208-234 173-199 (388)
490 PF10236 DAP3: Mitochondrial r 92.4 3.8 8.2E-05 49.3 16.9 47 339-385 258-305 (309)
491 PRK00625 shikimate kinase; Pro 92.4 0.095 2.1E-06 56.9 3.0 24 211-234 2-25 (173)
492 KOG0652 26S proteasome regulat 92.3 2.7 5.8E-05 46.6 13.7 183 185-393 170-391 (424)
493 cd01122 GP4d_helicase GP4d_hel 92.3 0.87 1.9E-05 54.0 11.5 36 209-244 30-66 (271)
494 cd01858 NGP_1 NGP-1. Autoanti 92.3 0.8 1.7E-05 49.2 10.1 23 209-231 102-124 (157)
495 cd02019 NK Nucleoside/nucleoti 92.3 0.1 2.2E-06 47.1 2.6 23 211-233 1-23 (69)
496 PRK06921 hypothetical protein; 92.3 0.38 8.3E-06 56.3 8.1 101 709-818 117-224 (266)
497 PRK08233 hypothetical protein; 92.2 0.11 2.3E-06 57.6 3.3 26 209-234 3-28 (182)
498 CHL00206 ycf2 Ycf2; Provisiona 92.2 0.74 1.6E-05 65.1 11.7 27 207-233 1628-1654(2281)
499 KOG1514 Origin recognition com 92.2 3.7 8E-05 52.5 16.7 134 184-325 394-546 (767)
500 PRK04040 adenylate kinase; Pro 92.2 0.13 2.7E-06 56.9 3.8 25 210-234 3-27 (188)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-88 Score=936.75 Aligned_cols=554 Identities=38% Similarity=0.639 Sum_probs=502.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCc
Q 000202 1 MASSSSSPPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKY 80 (1866)
Q Consensus 1 m~~~~~~~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (1866)
|||||||+ +.++||||+||||+|+|++|++||+++|+++||.+|+|+++++|+.|.+++.+||++||++|||||++|
T Consensus 1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 67666554 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHHhhcc-hhhhhhHHHHHHhhhccCCCccccc
Q 000202 81 ASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVI 159 (1866)
Q Consensus 81 ~~s~~c~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~-~~~~~~wr~al~~~a~~~g~~~~~~ 159 (1866)
|+|+||++||++|++|+++.+++|+||||+|+|+|||+|+|.||+||.+|+.+. .+++++||+||++||+++||++..+
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCC
Confidence 999999999999999999999999999999999999999999999999998764 4789999999999999999999888
Q ss_pred CccchhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc
Q 000202 160 RPESRLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG 239 (1866)
Q Consensus 160 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (1866)
..|+++|++||++|.+++...++...+++|||+.+++++.++|..+.+++++|+||||||+||||||+++|+++..+|++
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 88999999999999999998888888999999999999999998888889999999999999999999999999999999
Q ss_pred eEEEEee--cccc---c------cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHH
Q 000202 240 SYFACNV--RAAE---E------TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELL 308 (1866)
Q Consensus 240 ~~~~~~~--~~~~---~------~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l 308 (1866)
.+|+... .... . ......++++++.++...... ... ....++++++++|+||||||||+.++|+.+
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~~--~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KIY--HLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-ccC--CHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 9998642 1100 0 001234566777776654431 111 225678889999999999999999999999
Q ss_pred hhccCCCCCCCEEEEEccccchhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 309 IGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 309 ~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
.....|+++||+||||||+++++..++..++|+|+.|+.+||++||+++||++..+++++.+++++|+++|+|+||||++
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~v 394 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNV 394 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99888999999999999999999887788999999999999999999999998878888999999999999999999999
Q ss_pred ecccccCCCHHHHHHHHHHhccCCCchhhhhhhcccCCCChh-hH-----------------------------------
Q 000202 389 LGCYLCGRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDS-QK----------------------------------- 432 (1866)
Q Consensus 389 ~g~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~-~k----------------------------------- 432 (1866)
+|++|++++..+|+.++++++...+.+|.++|++||++|+++ +|
T Consensus 395 lgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~ 474 (1153)
T PLN03210 395 LGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKN 474 (1153)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHH
Confidence 999999999999999999999888889999999999999764 55
Q ss_pred --------------HHHHHHHHHhHHhhcccCCCCCCCeeeecchhHHHHHhhcCcccceEEEEEeecC-CCcccccccc
Q 000202 433 --------------RMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYEVLKKNTGTEAIKDISLNMS-DNEKEIFART 497 (1866)
Q Consensus 433 --------------~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~~ 497 (1866)
.||+++++||++|+++++ ..|+++.|+|.++++.+++.+++|++.+++|++|++ .....+...+
T Consensus 475 L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 899999999999999987 689999999999999999999999999999999998 6678899999
Q ss_pred cCCcccccceeecc--------------------CCCceeee---cCCCCCCCCCCCCCCeeEEEcCCCCCcccCCCccc
Q 000202 498 FSTMTNLGHLKAYE--------------------SREIKDVM---SDLEVVPFPEVYAKNLVSLKMWDGKVKERWDDVQK 554 (1866)
Q Consensus 498 f~~m~~l~~l~~~~--------------------~~~l~~l~---~~~~~lp~~~f~~~~l~~l~l~~s~~~~lw~~~~~ 554 (1866)
|.+|.+|++|++|. |.+||+|+ ||++++| ++|.+++|++|+|++|+|+++|++.+.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNFRPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-CcCCccCCcEEECcCcccccccccccc
Confidence 99999999999853 56799999 9999999 999999999999999999999999998
Q ss_pred Cccchhhcc
Q 000202 555 VDVECDRLD 563 (1866)
Q Consensus 555 l~~~~~~l~ 563 (1866)
+.. +..++
T Consensus 633 l~~-Lk~L~ 640 (1153)
T PLN03210 633 LTG-LRNID 640 (1153)
T ss_pred CCC-CCEEE
Confidence 876 34444
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-74 Score=749.62 Aligned_cols=475 Identities=33% Similarity=0.582 Sum_probs=404.3
Q ss_pred chhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc-cccccceEEEEEecCCCCHHHHHHHHHHHhccCCC
Q 000202 981 NYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE-VKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK 1059 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 1059 (1866)
+|.+..++++++.|.+++..+|+|+||||+||||||++++|... ++.+|+.++||+||+.|+...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 46778999999999777779999999999999999999999888 99999999999999999999999999999987443
Q ss_pred C--ccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-CCCCcEEEecCCChH
Q 000202 1060 D--RETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1060 ~--~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~~~~~l~~L~~~ 1136 (1866)
. ....++.+..+.+.|++|||||||||||+..+|+.++.++|...+||+|++|||++.||.. |++...+++++|+.+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 2 2234688899999999999999999999999999999999999899999999999999999 888899999999999
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccc-cchhhHHHH
Q 000202 1137 DAWELFCKEVGGI--IQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEE-CCTEDLIEL 1213 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~--~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~i~~~ 1213 (1866)
|||+||++.|+.. ..++.++++|++|+++|+|+|||++++|+.|+.+++..+|+++.+.+......+. ...+.|+++
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 9999999999876 3456799999999999999999999999999999999999999998765432222 345689999
Q ss_pred HHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhh--HhHHHhHHHHHHHHHHhhhhhccc---ccC
Q 000202 1214 LKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTL--ANAHKRGHQIVDVLVDASLLLINE---VHN 1288 (1866)
Q Consensus 1214 l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~--~~~~~~~~~~~~~L~~~sll~~~~---~~~ 1288 (1866)
|++||+.||++ +|.||+|||+||+||.|+++.||.+|+||||+.+.. ..+++.|+.|+.+|++++|++..+ ...
T Consensus 401 LklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 401 LKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 99999999965 999999999999999999999999999999998743 358999999999999999999765 347
Q ss_pred cccchhHHHHHHHHHhhcCCCC-ceeeccccchhhHHHhhhhhccCCCCCCCCCCCcccccccchhhHHHHhcccCCCCC
Q 000202 1289 SIRMPGLMKDLAFGILSSSTGD-RCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAYQFLLGARAGLTE 1367 (1866)
Q Consensus 1289 ~~~mhdlv~dla~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~~~~ 1367 (1866)
.|+|||+|||+|.++++..... +..+.. .+.++..
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~--------------------------------------------~~~~~~~ 515 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVS--------------------------------------------DGVGLSE 515 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEE--------------------------------------------CCcCccc
Confidence 8999999999999996532211 001100 0011222
Q ss_pred CCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcC-CcccChhHHhcCCCCcEEEccCCC-CCCCChhhcCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCR-LRVIPPSFFELMTSLKVLNLSKTR-IKSLPETLVNLK 1445 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~-l~~~p~~~~~~l~~L~~L~Ls~~~-i~~lp~~i~~L~ 1445 (1866)
.|....|...+.+.+++|.+..++....++.|++|.+.+|.. +..++..+|..|+.|++|||++|. +.+||.+|++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 344566788899999999999999888899999999998864 788888889999999999999874 678898888888
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecccc
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+||||+|+++. +..+|.++++|+.|.+||+..+.-. .+|..+..|++||+|.+..
T Consensus 596 ~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 596 HLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 88888888887 5588888888888888888887533 4444455588888887754
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-58 Score=641.96 Aligned_cols=771 Identities=19% Similarity=0.239 Sum_probs=493.6
Q ss_pred eeEeeccCCCCcchhhhhhhhcchhhhhhhhccccccccCCCCCCCCCCCCCCC-cccccccccccCCccc--ccccCCc
Q 000202 900 SVVLSESVPASDTDSMSFLFEDPASRLENLKEDQMKYSPQPDKQAIPKGEDQTN-PILNICVKQPVEPIPV--IKLGTSN 976 (1866)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ 976 (1866)
-|.|.++.....+.++.+.|++...+- -.++.++|..+....+...|+.... ......+.+.+..+.. ...+...
T Consensus 105 fy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~ 182 (1153)
T PLN03210 105 FYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSND 182 (1153)
T ss_pred EecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcc
Confidence 566666666666777777776543321 1123345555544444455543321 1111122222211110 0112233
Q ss_pred ccccchhhHHHHHHHHHh--ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe---cCC-----------
Q 000202 977 VTAVNYTQRNVRKIFRYV--NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV---SRY----------- 1040 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~----------- 1040 (1866)
..+++|+++.++++..++ ....+++|+||||||+||||||+++|+ ++...|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 445777778888887777 355688999999999999999999965 56778988887742 111
Q ss_pred CC-HHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhh
Q 000202 1041 WN-TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVC 1119 (1866)
Q Consensus 1041 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 1119 (1866)
++ ...+++.++.++......... . ...+++.|+++|+||||||||+..+|+.+.....+.++||+||||||+.+++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~--~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY--H-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC--C-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHH
Confidence 11 123555555555332211110 1 2457788999999999999999999999988777778999999999999999
Q ss_pred ccCCCCcEEEecCCChHHHHHHHHHHhcCCCC-CchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCC
Q 000202 1120 RNMDVNMVVKLETLSMKDAWELFCKEVGGIIQ-SPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSL 1198 (1866)
Q Consensus 1120 ~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~ 1198 (1866)
..++.+++|+|+.|++++||+||+++||+... .+++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++.+..
T Consensus 338 ~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 338 RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRN 416 (1153)
T ss_pred HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 88888899999999999999999999987653 3468889999999999999999999999998 578999999987643
Q ss_pred CccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHh
Q 000202 1199 PITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDA 1278 (1866)
Q Consensus 1199 ~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~ 1278 (1866)
. ...+|..+|++||++|+++..|.||+|||+||.+..++ .+..|.+++... ++..++.|+++
T Consensus 417 ~------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~---------~~~~l~~L~~k 478 (1153)
T PLN03210 417 G------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD---------VNIGLKNLVDK 478 (1153)
T ss_pred C------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC---------chhChHHHHhc
Confidence 2 24579999999999998754799999999999987654 466788876542 22348889999
Q ss_pred hhhhcccccCcccchhHHHHHHHHHhhcCC---CCceeeccccchhhHHHhhhhhccCCCCCCCCCCCcccccccchhhH
Q 000202 1279 SLLLINEVHNSIRMPGLMKDLAFGILSSST---GDRCFLSTAEGFQFLSRAYSRLAELPNAGTSSLRSPERSRLFIPEAY 1355 (1866)
Q Consensus 1279 sll~~~~~~~~~~mhdlv~dla~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~~ 1355 (1866)
||++.. .+.+.|||++|+||++|+...+ +++.++...++...+. .. ..+...... ..+...+ +
T Consensus 479 sLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl------~~--~~g~~~v~~---i~l~~~~-~ 544 (1153)
T PLN03210 479 SLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL------ED--NTGTKKVLG---ITLDIDE-I 544 (1153)
T ss_pred CCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH------Hh--CcccceeeE---EEeccCc-c
Confidence 999864 3679999999999999986543 4445554433322111 00 001100000 0000000 0
Q ss_pred HHHhcccCCCCCCCCccccccCcEEEccCCCCC-------CCCC-CCCC-CcccEEEccCCcCCcccChhHHhcCCCCcE
Q 000202 1356 QFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQ-------TLPG-RPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKV 1426 (1866)
Q Consensus 1356 ~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~-------~l~~-~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~ 1426 (1866)
.........+..+.+|+.|.+..+... .+|. +..+ .+|+.|.+.++ .+..+|..+ .+.+|+.
T Consensus 545 ------~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f--~~~~L~~ 615 (1153)
T PLN03210 545 ------DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF--RPENLVK 615 (1153)
T ss_pred ------ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC--CccCCcE
Confidence 000001122455677777777544321 2342 3333 46888888876 677888765 3688999
Q ss_pred EEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceecccccccc
Q 000202 1427 LNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGSM 1505 (1866)
Q Consensus 1427 L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~ 1505 (1866)
|+|++|.+..+|..+..+++|++|+|++|..++.+| .++.+++|++|++++| .+..+|..+++|++|++|++.+|..+
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 999999888888888889999999998888788887 4788889999999887 56788888999999999988877654
Q ss_pred CCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccC
Q 000202 1506 YKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQ 1585 (1866)
Q Consensus 1506 ~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 1585 (1866)
.. +|.. + ++++|+.|++++|.... .++ ...++|+.|+++.|.+..++..+ ..+
T Consensus 695 ~~-----Lp~~------i-~l~sL~~L~Lsgc~~L~-------~~p---~~~~nL~~L~L~~n~i~~lP~~~-----~l~ 747 (1153)
T PLN03210 695 EI-----LPTG------I-NLKSLYRLNLSGCSRLK-------SFP---DISTNISWLDLDETAIEEFPSNL-----RLE 747 (1153)
T ss_pred Cc-----cCCc------C-CCCCCCEEeCCCCCCcc-------ccc---cccCCcCeeecCCCccccccccc-----ccc
Confidence 32 2321 1 57788888888654322 111 12357888888888766544221 223
Q ss_pred CcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCc
Q 000202 1586 QLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLK 1665 (1866)
Q Consensus 1586 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~ 1665 (1866)
+|..|.+..... ..+.. ....+++........+..+.+.++..+..+|. .++++++|+
T Consensus 748 ~L~~L~l~~~~~-~~l~~--------------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~ 805 (1153)
T PLN03210 748 NLDELILCEMKS-EKLWE--------------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLE 805 (1153)
T ss_pred ccccccccccch-hhccc--------------------cccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCC
Confidence 444443321000 00000 00001110000011223333444444444443 256677777
Q ss_pred EEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhcccc
Q 000202 1666 FCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKL 1745 (1866)
Q Consensus 1666 ~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sL 1745 (1866)
.|+|++|+.++.++... .+++|+.|.+++|.++..+ + ...++|+.|++.++ .++.+|. .+..+++|
T Consensus 806 ~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L 871 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTF-----P-DISTNISDLNLSRT-GIEEVPW--WIEKFSNL 871 (1153)
T ss_pred EEECCCCCCcCeeCCCC-----CccccCEEECCCCCccccc-----c-ccccccCEeECCCC-CCccChH--HHhcCCCC
Confidence 77777777777665431 3667777777777665431 1 12356777777665 5555533 45667777
Q ss_pred ceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc
Q 000202 1746 EELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1746 e~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
+.|++++|++++.++.. ...+++|+.|.+++|++|..+
T Consensus 872 ~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCCcCccCcc-------cccccCCCeeecCCCcccccc
Confidence 77777777777666521 235667777777777776654
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-39 Score=417.95 Aligned_cols=269 Identities=20% Similarity=0.259 Sum_probs=209.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhhhhhhhhHHHHHhhhhhhhhh------------------
Q 000202 572 HTDLKQLRLKLAEVRYLLQDAVRCGADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEISKSM------------------ 633 (1866)
Q Consensus 572 ~~~l~~l~~~L~~i~a~L~dAe~~~~~~~~~v~~Wl~qLrd~ayd~eD~lD~~~~~~~~~~~------------------ 633 (1866)
...+..++..|..+++++.||+.++. +...++.|...+++++|++||.++.+......++.
T Consensus 27 ~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~ 105 (889)
T KOG4658|consen 27 DNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCG 105 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhh
Confidence 44799999999999999999977654 67778999999999999999999998765533210
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhhhccCcccccccc-cccccCCCCCCcccccccccchhhHHHHHHHhhhhhhccCCc
Q 000202 634 ----FDREIRRIHQQLVRLLNLFHKLATGHYEESSAV-SELSSRRSDDYAVSENDLAVSERDLVHFINKVNYELLRDVNM 708 (1866)
Q Consensus 634 ----~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~d~~~li~~l~~~~~~~~~~ 708 (1866)
....+..+..++..+...++.+........... ......+.+........ +|.+.+++++.+.|..+.
T Consensus 106 ~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------ 178 (889)
T KOG4658|consen 106 FCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------ 178 (889)
T ss_pred hHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------
Confidence 123344455666666666666654332111110 01111233333334444 999999999999887552
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCcc-ccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhh---h---------h
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKK-VKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENM---A---------D 775 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~-v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~---~---------~ 775 (1866)
.+|++|+||||+||||||+.+||+.. |+.+|+..|||+||++|+..++-+.|+..++........ . .
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 29999999999999999999999998 999999999999999999999999999987642211100 0 1
Q ss_pred ccCeEEEEEEccCCCChHHHHHHHHhcccCCCCCcEEEEecCChHHHhh-ccCCCCcccCCCCCCCcHHhhhhhcCC
Q 000202 776 LSERLLVVLDDVCDIDDEELHNFRLLISNMRDSGSCFLVTTHSHRVATM-MSSVSEGQLISLLKLDSEGYFKSELAP 851 (1866)
Q Consensus 776 ~~~r~LlVlddv~~~~~~~w~~~~~~l~~~~~~gs~iivttr~~~va~~-m~t~~~~~l~~L~~~~~~~lfk~~~~~ 851 (1866)
.++||+|||||||+. ..|+.+..++|. ..+||+|++|||+++||.. |++..++....|..+++|.+|...++.
T Consensus 259 ~~krfllvLDDIW~~--~dw~~I~~~~p~-~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEE--VDWDKIGVPFPS-RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred ccCceEEEEeccccc--ccHHhcCCCCCC-ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 179999999999998 679999999997 5789999999999999998 888788999999999999999988874
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.3e-40 Score=391.92 Aligned_cols=276 Identities=30% Similarity=0.524 Sum_probs=225.4
Q ss_pred hhHHHHHHHHHhcc--CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-
Q 000202 983 TQRNVRKIFRYVND--VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK- 1059 (1866)
Q Consensus 983 ~~~~~~~i~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 1059 (1866)
|+.++++|.+.|.+ .+.++|+|+||||+||||||++++++..++..|+.++|+.+++..+...+++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999966 778999999999999999999998877789999999999999999999999999999987643
Q ss_pred --CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCC-CcEEEecCCChH
Q 000202 1060 --DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDV-NMVVKLETLSMK 1136 (1866)
Q Consensus 1060 --~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~~L~~~ 1136 (1866)
...+..+....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|+|++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677889999999999999999999999999999999888877789999999999999887654 678999999999
Q ss_pred HHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhHHHHH
Q 000202 1137 DAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELL 1214 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 1214 (1866)
+|++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+.+.+..+|+++++.+.............+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999997654 3445667899999999999999999999997655778999988665332211111457899999
Q ss_pred HHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccch
Q 000202 1215 KFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVG 1259 (1866)
Q Consensus 1215 ~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~ 1259 (1866)
.+||+.||++ +|+||+|||+||+++.|+++.|+++|++||||..
T Consensus 241 ~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999997 9999999999999999999999999999999865
No 6
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=324.95 Aligned_cols=154 Identities=32% Similarity=0.511 Sum_probs=140.5
Q ss_pred CCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHH
Q 000202 11 NDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDE 89 (1866)
Q Consensus 11 ~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~E 89 (1866)
+...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 3468899999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEEEEecCCccccc-ccchhhhHHHHhhcchhhhhhHHHHHHhhhccCCCcccc-cCccchhhh
Q 000202 90 LLKILECKRNYGQIVIPVFYRVDPSHVRKQ-IGSFGDSFFMLEERFPYKMRNWRSALTEAADLSGFDSCV-IRPESRLVA 167 (1866)
Q Consensus 90 l~~~~~~~~~~~~~v~pvf~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~wr~al~~~a~~~g~~~~~-~~~e~~~i~ 167 (1866)
|++|+++. ..|+||||+|+|+|||+| .|.+ ..+++++||+||++||+++|+++.. ...|+++|+
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~ 167 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVT 167 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHH
Confidence 99999863 479999999999999997 4432 3478999999999999999998764 345999999
Q ss_pred hhHHHHhhccc
Q 000202 168 DIANEVLERLD 178 (1866)
Q Consensus 168 ~i~~~v~~~l~ 178 (1866)
+|+..|.++|-
T Consensus 168 ~iv~~v~k~l~ 178 (187)
T PLN03194 168 MASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 7
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.3e-35 Score=349.73 Aligned_cols=269 Identities=29% Similarity=0.441 Sum_probs=213.2
Q ss_pred ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh--hhccccceEEEEeeccccccccHHHHHHHHHHHHhc
Q 000202 191 VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK--ISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN 268 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 268 (1866)
||.++++|.+.|.....+.++|+|+||||+||||||.+++++ +..+|+.++|+...+.. ....++.+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~----~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP----SLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S----CCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc----ccccccccccccccc
Confidence 789999999999986678999999999999999999999997 88999999999876652 226777888888776
Q ss_pred ccccc-C--ccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccCcc-ceeeecCC
Q 000202 269 DRNVK-N--FQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEV-DHIYQMKE 344 (1866)
Q Consensus 269 ~~~~~-~--~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~ 344 (1866)
..... . ........+.+.|+++++||||||||+...|+.+...++.+..|++||||||++.++...+. ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 63311 1 11223377888899999999999999999999888887777789999999999998876654 67999999
Q ss_pred CCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCcceeeeecccccCC-CHHHHHHHHHHhccCC------Cchh
Q 000202 345 LVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVPLALKVLGCYLCGR-SKEEWESAMRKLEIVP------HMEI 416 (1866)
Q Consensus 345 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~i 416 (1866)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +..+|+++++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3344556789999999999999999999999543 6688999998776432 3569
Q ss_pred hhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchhHHHH
Q 000202 417 QEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDEDIYE 468 (1866)
Q Consensus 417 ~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~~~~ 468 (1866)
..++.+||+.|+++.|.||.+|+ +||++..++...++++|.+||++.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~-----~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLS-----IFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGG-----GSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCc-----CCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999 999999999999999999999975
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=4.8e-20 Score=258.96 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=47.8
Q ss_pred cccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccccc--C
Q 000202 1716 FAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--N 1793 (1866)
Q Consensus 1716 ~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~ 1793 (1866)
+++|+.|++++| ++....| ..+.++++|+.|+|++|.-...++ ..+..+++|+.|+|++|.-...++. .
T Consensus 498 l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 498 LSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLDLSHNQLSGQIP-------ASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred hhccCEEECcCC-cceeeCC-hHHcCccCCCEEECCCCcccccCC-------hhHhCcccCCEEECCCCcccccCChhHh
Confidence 444455555554 2222212 233445555555555553221221 1234667788888887775444543 2
Q ss_pred CCCCccEEEEEcCccccccC
Q 000202 1794 DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1794 ~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
.+++|+.|++++|+-...+|
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCcccCEEeccCCcceeeCC
Confidence 56788888888887665555
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=3e-20 Score=261.12 Aligned_cols=405 Identities=19% Similarity=0.162 Sum_probs=195.1
Q ss_pred cccCcEEEccCCCCC-CCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEE
Q 000202 1374 WTHAKMIFFMDNDLQ-TLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~-~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L 1450 (1866)
+++|++|++++|.+. .+| .+..+++|++|+|++|.....+|..+ +++++|++|+|++|.+. .+|..++++.+|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 445555555555554 333 23455555555555554334444443 44555555555555544 445555555555555
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecccccccc----------CCCccccCCCCCCC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTVFFFGSM----------YKSEYIKLPPDLIS 1519 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~~----------~~~~~~~l~~~~~~ 1519 (1866)
+|++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|++..+.-. ..+..+.+..+.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555555555555555555555555555554 44555555555555555432110 01111111111111
Q ss_pred ---hhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeEEEEe
Q 000202 1520 ---SDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFKFVVG 1595 (1866)
Q Consensus 1520 ---~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~l~~~ 1595 (1866)
...+.++++|+.|+++.+... ...+..+..+++|+.|+++.|.+.. ++..+ ....+|+.+.+..+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n 366 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFT-------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN 366 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccC-------CcCChhHhcCCCCCEEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence 112333444444444322111 1223344455555555555554431 11111 12234444444211
Q ss_pred cccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCC
Q 000202 1596 HDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLK 1674 (1866)
Q Consensus 1596 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~ 1674 (1866)
.-....+.++. .......+.+...... .+|.+ +..+..+..+.+.++.-...++ ..+..+++|+.|++++|.-
T Consensus 367 ~l~~~~p~~~~----~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 367 NLTGEIPEGLC----SSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELP-SEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred eeEeeCChhHh----CcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECC-hhHhcCCCCCEEECcCCcc
Confidence 11111111110 0011111122211222 22322 2222333444443332212222 2466788888888887543
Q ss_pred ccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecccc
Q 000202 1675 IKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL 1754 (1866)
Q Consensus 1675 l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~ 1754 (1866)
...++. ....+++|+.|+++++.-...+. .....++|+.|++++| ++....+ ..+.++++|+.|++++|.
T Consensus 441 ~~~~~~----~~~~l~~L~~L~L~~n~~~~~~p----~~~~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 441 QGRINS----RKWDMPSLQMLSLARNKFFGGLP----DSFGSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENK 510 (968)
T ss_pred cCccCh----hhccCCCCcEEECcCceeeeecC----cccccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCc
Confidence 322221 22357888888888764332211 1113578888888888 4444333 356678888888888884
Q ss_pred ccceecccCccccccccCCCCcCEEeccCCcccccccc--CCCCCccEEEEEcCccccccC
Q 000202 1755 AVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1755 ~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
-...+| ..+..+++|+.|+|++|.-...++. ..+++|+.|++++|.-...+|
T Consensus 511 l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 511 LSGEIP-------DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred ceeeCC-------hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 333333 1244678888888888764433322 367888888888887655554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=2.5e-20 Score=216.77 Aligned_cols=325 Identities=21% Similarity=0.251 Sum_probs=218.9
Q ss_pred ccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCc-CCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCc
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNC-RLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQ 1448 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~-~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 1448 (1866)
...+.+|+.|++.+|.+..+. .++.+++||.+.+..|+ ....+|+.+|. |..|.+||||+|.+.+.|..+..-+++-
T Consensus 51 L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhhhcchhhhhhcCcE
Confidence 556778888999999988766 56789999999998875 34569999975 8999999999999999999999999999
Q ss_pred EEecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1449 ILILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
.|+||+|+ +..+|.+ +.+|+.|-+||||+|.+..+|+.+.+|..|++|.+++.. -+.+....+..++
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-----------L~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-----------LNHFQLRQLPSMT 197 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-----------hhHHHHhcCccch
Confidence 99999998 5677765 458999999999999999999999999999999986421 1112222245567
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|.++..... ...++..+..+.+|+.++++.|++..+++.+.. ..+|+.|.+.
T Consensus 198 sL~vLhms~TqRT------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~----l~~LrrLNLS-------------- 253 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRT------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK----LRNLRRLNLS-------------- 253 (1255)
T ss_pred hhhhhhcccccch------hhcCCCchhhhhhhhhccccccCCCcchHHHhh----hhhhheeccC--------------
Confidence 7777777743322 234788888999999999999888777665542 1223332221
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
... ++.|.. ..+...+|+.|++++ +.++.++.. ..
T Consensus 254 --------------~N~-------------------------iteL~~-~~~~W~~lEtLNlSr-NQLt~LP~a----vc 288 (1255)
T KOG0444|consen 254 --------------GNK-------------------------ITELNM-TEGEWENLETLNLSR-NQLTVLPDA----VC 288 (1255)
T ss_pred --------------cCc-------------------------eeeeec-cHHHHhhhhhhcccc-chhccchHH----Hh
Confidence 000 111100 124455677777777 566666543 23
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
-++.|+.|++.+ ++|+-. ..+...|.+.+|+.++..++ +|+-+|. ++..|+.|+.|.++ |+.|..+|
T Consensus 289 KL~kL~kLy~n~-NkL~Fe-GiPSGIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L~-~NrLiTLP------- 355 (1255)
T KOG0444|consen 289 KLTKLTKLYANN-NKLTFE-GIPSGIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKLD-HNRLITLP------- 355 (1255)
T ss_pred hhHHHHHHHhcc-Cccccc-CCccchhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhccc-ccceeech-------
Confidence 466777776654 222210 00111234556666666554 5665533 56667777777764 34555554
Q ss_pred ccccCCCCcCEEeccCCcccccc
Q 000202 1768 SSCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
..++.+|.|+.|++++.|+|.--
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCC
Confidence 23456677777777777776543
No 11
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.75 E-value=3.2e-19 Score=187.48 Aligned_cols=129 Identities=34% Similarity=0.562 Sum_probs=112.9
Q ss_pred EEEccccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHHH
Q 000202 18 VFLSFRGEDTRDNFTSHLYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKIL 94 (1866)
Q Consensus 18 vFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 94 (1866)
|||||++.|.+++|+++|..+|++. |+++|+++ |+.+|..+.++|.++|++||++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444689999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCC--CEEEEEEEEecCCccc-ccccchhhhHHHHhhcch-----hhhhhHHHHHH
Q 000202 95 ECKRNYG--QIVIPVFYRVDPSHVR-KQIGSFGDSFFMLEERFP-----YKMRNWRSALT 146 (1866)
Q Consensus 95 ~~~~~~~--~~v~pvf~~v~p~~vr-~~~g~~~~~~~~~~~~~~-----~~~~~wr~al~ 146 (1866)
++....+ ..|+||||+|.+++++ .+.+.|+..|..+....+ .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986654 8999999999999999 799999998877665433 34788998764
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=5.7e-19 Score=205.51 Aligned_cols=346 Identities=20% Similarity=0.245 Sum_probs=221.7
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
.+.++++|+.+++..|.+..+|.++.. .+|..|+|.+| .+..+..+-...++.||.||||.|.|+.+| .++..-.++
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 357889999999999999999987654 56999999988 677777766788999999999999999998 567777899
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
++|+|++|.+...--..|.+|.+|-+|.|+.|.|+.+|.. |.+|++|+.|++.... + + ...+..+.+|
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-i---r-------ive~ltFqgL 244 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-I---R-------IVEGLTFQGL 244 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-e---e-------eehhhhhcCc
Confidence 9999999998776677889999999999999999999865 6669999999885411 0 0 1112235566
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccccc--cccc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKS--IVSW 1604 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~ 1604 (1866)
++|+.|.+..+... +.--..+-.|.+++.|++..|++..+.+ +.......|+.|.+..+ .+.+ ...|
T Consensus 245 ~Sl~nlklqrN~I~-------kL~DG~Fy~l~kme~l~L~~N~l~~vn~---g~lfgLt~L~~L~lS~N-aI~rih~d~W 313 (873)
T KOG4194|consen 245 PSLQNLKLQRNDIS-------KLDDGAFYGLEKMEHLNLETNRLQAVNE---GWLFGLTSLEQLDLSYN-AIQRIHIDSW 313 (873)
T ss_pred hhhhhhhhhhcCcc-------cccCcceeeecccceeecccchhhhhhc---ccccccchhhhhccchh-hhheeecchh
Confidence 66666666532211 1122344556666666776666554431 11111222232222110 0000 0011
Q ss_pred ccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCc
Q 000202 1605 VTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEH 1684 (1866)
Q Consensus 1605 ~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~ 1684 (1866)
. .....+.+.| .++.+++++...+..+..|+.|.++. +.+..+-..
T Consensus 314 s-----ftqkL~~LdL-------------------------s~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~--- 359 (873)
T KOG4194|consen 314 S-----FTQKLKELDL-------------------------SSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG--- 359 (873)
T ss_pred h-----hcccceeEec-------------------------cccccccCChhHHHHHHHhhhhcccc-cchHHHHhh---
Confidence 0 0000111112 23345555555566677788888877 566665433
Q ss_pred cccccccccccccccccccc-ccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1685 TTAVFPSLENLTLNHLWDLT-CIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1685 ~~~~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
...++.+|++|++.+. .+. ++-....+..++|+|++|.+.++ +|+.++. ..+..+++||+|++.++ .+.++-.+
T Consensus 360 af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~k-rAfsgl~~LE~LdL~~N-aiaSIq~n- 434 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPK-RAFSGLEALEHLDLGDN-AIASIQPN- 434 (873)
T ss_pred HHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecch-hhhccCcccceecCCCC-cceeeccc-
Confidence 4556778888887653 111 11122233346899999999988 8888755 45677999999999886 34454322
Q ss_pred ccccccccCCCCcCEEeccC
Q 000202 1764 EITYSSCIMLPSLKKLRLHH 1783 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~ 1783 (1866)
....+ .|+.|.+..
T Consensus 435 -----AFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 435 -----AFEPM-ELKELVMNS 448 (873)
T ss_pred -----ccccc-hhhhhhhcc
Confidence 12233 777777643
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-17 Score=194.93 Aligned_cols=388 Identities=21% Similarity=0.220 Sum_probs=235.4
Q ss_pred cEEEccCCCCCCCC--CCCC--CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1378 KMIFFMDNDLQTLP--GRPS--CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~--~~~~--~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
+.++++++.+..+. .+.+ .+.-++|++++| .+..+...+|.++++|+.+++..|.++.+|...+...||+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 34566666655431 1111 234566899877 677887777888999999999999999999888888889999999
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
+|.+...-.+.+..++.|+.|||+.|.|+++|.. +.+-.++++|++++.. .+ .+ ..+.+.+|.+|-.|
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It-----~l-----~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-IT-----TL-----ETGHFDSLNSLLTL 202 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cc-----cc-----ccccccccchheee
Confidence 9887766667788888999999999999888754 6666788888886521 11 11 12335667777777
Q ss_pred ecccCCCCCcccccccccc-ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccc
Q 000202 1533 SIDVHPGDKRWDKDVKIVI-TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQC 1611 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 1611 (1866)
.++.+. +..++ ..+++|++|++|++..|.++.+...... ..++|+.+++- .+++..+.+-.
T Consensus 203 kLsrNr--------ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~nlklq-rN~I~kL~DG~------ 264 (873)
T KOG4194|consen 203 KLSRNR--------ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQNLKLQ-RNDISKLDDGA------ 264 (873)
T ss_pred ecccCc--------ccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhhhhhh-hcCcccccCcc------
Confidence 777432 22233 3456688888888888877655321111 11223322221 11111111000
Q ss_pred cccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccc
Q 000202 1612 DYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPS 1691 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~ 1691 (1866)
++.+.++ ..+ ...+++++.+...++-.+++|+.|+++. +.++.+-.. +....++
T Consensus 265 ----------Fy~l~km-----------e~l-~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d---~Wsftqk 318 (873)
T KOG4194|consen 265 ----------FYGLEKM-----------EHL-NLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHID---SWSFTQK 318 (873)
T ss_pred ----------eeeeccc-----------cee-ecccchhhhhhcccccccchhhhhccch-hhhheeecc---hhhhccc
Confidence 0000000 000 1123345555555666788888888887 566666433 2344678
Q ss_pred ccccccccccccccccccccccc---ccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccc
Q 000202 1692 LENLTLNHLWDLTCIWQGILPEG---SFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1692 L~~L~l~~~~~L~~~~~~~~~~~---~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
|+.|.++. +.++. ++++ .+..|++|.++.+ ++.++-. ..+..+.+|++|++.++ .+.-.+.++ ..
T Consensus 319 L~~LdLs~-N~i~~-----l~~~sf~~L~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N-~ls~~IEDa---a~ 386 (873)
T KOG4194|consen 319 LKELDLSS-NRITR-----LDEGSFRVLSQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSN-ELSWCIEDA---AV 386 (873)
T ss_pred ceeEeccc-ccccc-----CChhHHHHHHHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCC-eEEEEEecc---hh
Confidence 88888875 22222 2333 3567778888776 5665532 44567888999998876 333333332 22
Q ss_pred cccCCCCcCEEeccCCccccccccC---CCCCccEEEEEcCcccccc-----CCCcc---CcccceEEechHHHHhh
Q 000202 1769 SCIMLPSLKKLRLHHLPELANIWRN---DWPSLEYISFYGCPKLKKM-----GMDSK---LKETLIWIKAEKKWWAE 1834 (1866)
Q Consensus 1769 ~~~~lp~L~~L~L~~c~~L~~i~~~---~lpsLe~L~I~~Cp~L~~l-----pl~~~---l~~~~~~i~ce~~~~~~ 1834 (1866)
....+|+|++|.+.+. +|++|... .+++||+|++.+.+--.-- |+.-+ +++..+..+|.-+|..+
T Consensus 387 ~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred hhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 3457899999999886 48888543 6789999999776532210 11100 12334445888888653
No 14
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.70 E-value=4.4e-17 Score=172.12 Aligned_cols=134 Identities=42% Similarity=0.672 Sum_probs=114.9
Q ss_pred CccEEEcccc-ccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 000202 15 MYDVFLSFRG-EDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 93 (1866)
Q Consensus 15 ~~dvFis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 93 (1866)
.|||||||++ ++.++.|+.+|..+|+..|+.+|.|+....|... .+|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 5566889999999999999999999854433333 3999999999999999999999999999999999
Q ss_pred HHHHhh-CCCEEEEEEEEecCCcccccccchhhhHHHHhhcchhhh--hhHHHHHHhhh
Q 000202 94 LECKRN-YGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFPYKM--RNWRSALTEAA 149 (1866)
Q Consensus 94 ~~~~~~-~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~--~~wr~al~~~a 149 (1866)
+++... ...+||||+|+..|..+..+.+.+..++..+..++.++. ..|+.++.+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 998744 667999999999998899999999999988755665554 58999887654
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=4.4e-17 Score=190.14 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=123.5
Q ss_pred CCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
|+.+..+..|+.|+++.|.+.+.| .+...+++.+|+|++| .+..+|.++|-+++-|-+||||+|++..+|+.+..|.+
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhh
Confidence 455667777888888888888887 4556778888888877 67788888888888888888888888888888888888
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhh
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
||+|+|++|.+...--..+-.+++|++|.+++|+-+ .+|.++..|.||+.++++.. .+..+ +..+-
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------~Lp~v------Pecly 242 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------NLPIV------PECLY 242 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc------CCCcc------hHHHh
Confidence 888888888754322223345667777788877533 67777777777777776431 11111 22345
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
++.+|+.|+++.+.. ..+........+|++|+++.|++..+++
T Consensus 243 ~l~~LrrLNLS~N~i--------teL~~~~~~W~~lEtLNlSrNQLt~LP~ 285 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKI--------TELNMTEGEWENLETLNLSRNQLTVLPD 285 (1255)
T ss_pred hhhhhheeccCcCce--------eeeeccHHHHhhhhhhccccchhccchH
Confidence 666677776664322 1222333344566666666666555443
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=2.7e-17 Score=184.16 Aligned_cols=396 Identities=20% Similarity=0.206 Sum_probs=238.4
Q ss_pred CCCCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCC
Q 000202 1366 TEPPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNL 1444 (1866)
Q Consensus 1366 ~~~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 1444 (1866)
+.++++..+..+..++..+|.+..+| ++..|.+|..|++.+| .+..+|+.... |+.|+.||...|-++.+|+.++.|
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhhcCChhhcch
Confidence 34556667777777788888888888 4677888888888887 67778877756 888999998888888999999999
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhc-CCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIG-KLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
..|..|+|+.|+ +..+| .|+.+..|..|+++.|.|+.+|..++ +|.+|..|++.. .....+|. .+
T Consensus 206 ~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd------Nklke~Pd------e~ 271 (565)
T KOG0472|consen 206 ESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD------NKLKEVPD------EI 271 (565)
T ss_pred hhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc------cccccCch------HH
Confidence 999999999888 56778 78888888889988888888888766 788888887732 23333333 46
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhcc-Ccc-ccCCcceeEEEE------e
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKG-SAW-NNQQLTEFKFVV------G 1595 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~-~~~~L~~l~l~~------~ 1595 (1866)
..|++|+.|+++ ++.+..++.+++++ +|+.|-+.+|.++.+...+-. ... -.+.|++..... +
T Consensus 272 clLrsL~rLDlS--------NN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 272 CLLRSLERLDLS--------NNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred HHhhhhhhhccc--------CCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 678899999998 56677789999999 999999999998776432221 111 011122111100 0
Q ss_pred cc--cccccccccccccccccCccceeEeecCCCCChHHHHHHHhhc--ceecccccCceecCCCCcccccCCcEEEecc
Q 000202 1596 HD--VKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHST--AFYVDHHLSIVSLSDFGVGYMSGLKFCIISE 1671 (1866)
Q Consensus 1596 ~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~--~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~ 1671 (1866)
.. -...+.|...........+.+.+.....+.+|.++++...... ..... -.++..+|. .+..+..+...-+.+
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs-kNqL~elPk-~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS-KNQLCELPK-RLVELKELVTDLVLS 420 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc-cchHhhhhh-hhHHHHHHHHHHHhh
Confidence 00 0011222111111122233455566677888888876653211 00000 011222221 011111222222233
Q ss_pred cCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeec
Q 000202 1672 CLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVE 1751 (1866)
Q Consensus 1672 c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~ 1751 (1866)
.+.+..++.. ...|++|..|.+++.. |. .-+...+.+..|+.|+|+.+ +.+.+|.| +.-+..||.+-.+
T Consensus 421 nn~isfv~~~----l~~l~kLt~L~L~NN~-Ln---~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~--~y~lq~lEtllas 489 (565)
T KOG0472|consen 421 NNKISFVPLE----LSQLQKLTFLDLSNNL-LN---DLPEEMGSLVRLQTLNLSFN-RFRMLPEC--LYELQTLETLLAS 489 (565)
T ss_pred cCccccchHH----HHhhhcceeeecccch-hh---hcchhhhhhhhhheeccccc-ccccchHH--HhhHHHHHHHHhc
Confidence 3344333322 2345666666665421 11 11222345666777777776 55555443 2223334444333
Q ss_pred cccccceecccCccccccccCCCCcCEEeccCCcccccccc--CCCCCccEEEEEcCc
Q 000202 1752 YCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR--NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1752 ~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~--~~lpsLe~L~I~~Cp 1807 (1866)
...+.++..+ ++..+.+|..|+|.+. .++.++. +++++|++|.++|.|
T Consensus 490 -~nqi~~vd~~------~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 490 -NNQIGSVDPS------GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -cccccccChH------HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 3355555433 3567788888888765 4666654 488899999998876
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=2.7e-16 Score=194.03 Aligned_cols=116 Identities=23% Similarity=0.305 Sum_probs=67.6
Q ss_pred ccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecc-----
Q 000202 1687 AVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIIL----- 1761 (1866)
Q Consensus 1687 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~----- 1761 (1866)
..++.|+.|++.+. .|++-+ ......|++||.|+++++ +|... |.+.+.++..||+|.++++ .|+.++.
T Consensus 356 ~~~~~Lq~LylanN-~Ltd~c--~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~tva~~ 429 (1081)
T KOG0618|consen 356 NNHAALQELYLANN-HLTDSC--FPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGN-KLTTLPDTVANL 429 (1081)
T ss_pred hhhHHHHHHHHhcC-cccccc--hhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccc-hhhhhhHHHHhh
Confidence 45677777777652 233211 112235777778877776 66664 4456677777777777765 3444431
Q ss_pred --------cCcc--ccccccCCCCcCEEeccCCccccccccC---CCCCccEEEEEcCccc
Q 000202 1762 --------DGEI--TYSSCIMLPSLKKLRLHHLPELANIWRN---DWPSLEYISFYGCPKL 1809 (1866)
Q Consensus 1762 --------~~~~--~~~~~~~lp~L~~L~L~~c~~L~~i~~~---~lpsLe~L~I~~Cp~L 1809 (1866)
.+.. ....+..+|.|+.++|+ |.+|+.+-.. ..|.|++|+++|.+.+
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 1100 00123366788888885 4456554221 2378999999998764
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=2.9e-16 Score=176.04 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred CcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccch
Q 000202 1657 GVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTC 1736 (1866)
Q Consensus 1657 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~ 1736 (1866)
.+.++++|..|++++ +-+.+++.+. +.+-.|+.|+++.. ..++..... -....|+.+ +....++..+++
T Consensus 430 ~l~~l~kLt~L~L~N-N~Ln~LP~e~----~~lv~Lq~LnlS~N-rFr~lP~~~---y~lq~lEtl-las~nqi~~vd~- 498 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN-NLLNDLPEEM----GSLVRLQTLNLSFN-RFRMLPECL---YELQTLETL-LASNNQIGSVDP- 498 (565)
T ss_pred HHHhhhcceeeeccc-chhhhcchhh----hhhhhhheeccccc-ccccchHHH---hhHHHHHHH-HhccccccccCh-
Confidence 356778888888877 5566666542 33455777777642 222111000 011223333 333336777755
Q ss_pred hhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1737 SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1737 ~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
++++++.+|.+|++.++ .+..+|. .+..+.+|++|.|++.|
T Consensus 499 ~~l~nm~nL~tLDL~nN-dlq~IPp-------~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNN-DLQQIPP-------ILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCCC-chhhCCh-------hhccccceeEEEecCCc
Confidence 57788888888888765 5666652 24578888888888877
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=1.8e-14 Score=178.17 Aligned_cols=400 Identities=18% Similarity=0.237 Sum_probs=227.0
Q ss_pred cCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1376 HAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
.+..+++..|.+...| ...++-+|+.|++++| .+..+|..+ ..+.+|+.|+++.|.|..+|.+++++.+|++|.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 3667777888777655 2335556999999977 678888877 66899999999999999999999999999999999
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccC-----CCccccCCCCCCChhhhhcccc
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMY-----KSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~-----~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
+|. +..+|.++..+++|++|++++|.+..+|.-+..++.+..+..++..... .....++..+......+....+
T Consensus 100 ~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 100 NNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred cch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh
Confidence 886 7899999999999999999999999999988888888777766431111 1111222222222222223333
Q ss_pred CcE-eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH----------Hh-----hccCccccCCcceeEE
Q 000202 1529 LET-LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA----------EF-----LKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1529 L~~-L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----------~~-----~~~~~~~~~~L~~l~l 1592 (1866)
|+. |++..+... ...+..+.+|+.|.+..|.+..+. .- .......+.+|+.+.+
T Consensus 179 l~~~ldLr~N~~~----------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 179 LTHQLDLRYNEME----------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDI 248 (1081)
T ss_pred hheeeecccchhh----------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeec
Confidence 333 555532211 233444444444444433332211 00 0001112234444444
Q ss_pred EEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEeccc
Q 000202 1593 VVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISEC 1672 (1866)
Q Consensus 1593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c 1672 (1866)
. -.....+++|+..... .............+|...... ..+.++ ...+..+..++++ ++.+.+|+.|++..
T Consensus 249 s-~n~l~~lp~wi~~~~n----le~l~~n~N~l~~lp~ri~~~-~~L~~l-~~~~nel~yip~~-le~~~sL~tLdL~~- 319 (1081)
T KOG0618|consen 249 S-HNNLSNLPEWIGACAN----LEALNANHNRLVALPLRISRI-TSLVSL-SAAYNELEYIPPF-LEGLKSLRTLDLQS- 319 (1081)
T ss_pred c-hhhhhcchHHHHhccc----ceEecccchhHHhhHHHHhhh-hhHHHH-HhhhhhhhhCCCc-ccccceeeeeeehh-
Confidence 3 2233445555433211 111111112222233222111 001111 1112334444442 45577888888876
Q ss_pred CCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecc
Q 000202 1673 LKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEY 1752 (1866)
Q Consensus 1673 ~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~ 1752 (1866)
+++...+.... ...-.+|+.|..+.. .+... -......++.|+.|.+.++ .|++- ....+.+...|+.|++++
T Consensus 320 N~L~~lp~~~l--~v~~~~l~~ln~s~n-~l~~l--p~~~e~~~~~Lq~LylanN-~Ltd~-c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 320 NNLPSLPDNFL--AVLNASLNTLNVSSN-KLSTL--PSYEENNHAALQELYLANN-HLTDS-CFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred ccccccchHHH--hhhhHHHHHHhhhhc-ccccc--ccccchhhHHHHHHHHhcC-ccccc-chhhhccccceeeeeecc
Confidence 55666554210 011122444444321 11110 1222346889999999887 66553 123677889999999998
Q ss_pred ccccceecccCccccccccCCCCcCEEeccCCcccccc-----------------------cc-CCCCCccEEEEEcCcc
Q 000202 1753 CLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-----------------------WR-NDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1753 C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-----------------------~~-~~lpsLe~L~I~~Cp~ 1808 (1866)
+ .|.++|.. ....|+.|+.|.|++.. |+.| +. ..+|.|+.+++ .|-+
T Consensus 393 N-rL~~fpas------~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~ 463 (1081)
T KOG0618|consen 393 N-RLNSFPAS------KLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNN 463 (1081)
T ss_pred c-ccccCCHH------HHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccch
Confidence 7 56666632 23456666666666532 3222 21 25688999999 5778
Q ss_pred ccccC
Q 000202 1809 LKKMG 1813 (1866)
Q Consensus 1809 L~~lp 1813 (1866)
|...-
T Consensus 464 L~~~~ 468 (1081)
T KOG0618|consen 464 LSEVT 468 (1081)
T ss_pred hhhhh
Confidence 87654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=8.1e-15 Score=145.89 Aligned_cols=164 Identities=34% Similarity=0.508 Sum_probs=115.5
Q ss_pred CCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccC
Q 000202 1388 QTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGS 1467 (1866)
Q Consensus 1388 ~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~ 1467 (1866)
.++|.+..+.+...|.|++| .+..+|+.+ ..+.+|++|++++|.|+++|.+|+.|+.|+.|++.-|. +..+|..||.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 35555666667777777777 567777777 66777888888888888888888888888888877776 5677788888
Q ss_pred CCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccc
Q 000202 1468 LECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDK 1545 (1866)
Q Consensus 1468 L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 1545 (1866)
++.|+.||+..|++. .+|..|..++.|+.|+++. .++..+|. .+++|++|+.|.+. ++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d------ndfe~lp~------dvg~lt~lqil~lr--------dn 160 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD------NDFEILPP------DVGKLTNLQILSLR--------DN 160 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC------CCcccCCh------hhhhhcceeEEeec--------cC
Confidence 888888888777776 5677777777777776642 22223333 26677777777766 34
Q ss_pred ccccccccccCCCCCCEEEeecCCccchH
Q 000202 1546 DVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1546 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+.-.++.+++.+++|+.|.+.+|.+.-++
T Consensus 161 dll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 161 DLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred chhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 44456777888888888888877766554
No 21
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.36 E-value=3.5e-13 Score=133.31 Aligned_cols=91 Identities=33% Similarity=0.600 Sum_probs=77.6
Q ss_pred EEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHHHHHH
Q 000202 18 VFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECK 97 (1866)
Q Consensus 18 vFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~ 97 (1866)
|||||+++| +.|+.+|+..|+++|+++|+|.++.+|+.+...|.++|++|+..|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 569999999999999999999999999999999999999999999999999999999999998883
Q ss_pred hhCCCEEEEEEEEecCCcc
Q 000202 98 RNYGQIVIPVFYRVDPSHV 116 (1866)
Q Consensus 98 ~~~~~~v~pvf~~v~p~~v 116 (1866)
+.+..|+||. +++.++
T Consensus 76 -~~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 76 -KRGKPIIPVR--LDPCEL 91 (102)
T ss_dssp -CTSESEEEEE--CSGGGS
T ss_pred -HCCCEEEEEE--ECCcCC
Confidence 2455899998 555544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=3.6e-14 Score=141.30 Aligned_cols=168 Identities=24% Similarity=0.403 Sum_probs=132.4
Q ss_pred CCCccccccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.+....+++.+.|.+++|.+..+| ....+.+|++|++++| .++.+|.++ +.|+.|+.|+++-|++..+|..++.++.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhh-hhchhhhheecchhhhhcCccccCCCch
Confidence 344556677788888999888776 4678889999999866 788899888 6789999999999999999999999999
Q ss_pred CcEEecccccCc-ccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhc
Q 000202 1447 LQILILRDCDFL-FVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1447 L~~L~L~~~~~~-~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
|+.|||.+|... ..+|..|-.+..|+.|.++.|.+.-+|..+++|++||.|.+. ....+.+|. .++.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lr------dndll~lpk------eig~ 171 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLR------DNDLLSLPK------EIGD 171 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeec------cCchhhCcH------HHHH
Confidence 999999887754 467888888888999999999999999999999999998763 344555554 4788
Q ss_pred cccCcEeecccCCCCCccccccccccccccCC
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGL 1557 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 1557 (1866)
|+.|++|++.++. ...++.++..+
T Consensus 172 lt~lrelhiqgnr--------l~vlppel~~l 195 (264)
T KOG0617|consen 172 LTRLRELHIQGNR--------LTVLPPELANL 195 (264)
T ss_pred HHHHHHHhcccce--------eeecChhhhhh
Confidence 8889988887433 33455555544
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=5.9e-10 Score=144.68 Aligned_cols=109 Identities=27% Similarity=0.277 Sum_probs=81.7
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
...|+++++.+..+|... .++|+.|++.+| .+..+|. .+++|++|+|++|.++.+|.. ..+|+.|+|++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 456888888888888532 247888888877 5777774 257899999999988888853 4678888998887
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+..+|.. +.+|+.|++++|.++.+|.. +++|+.|++++
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~ 311 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 311 (788)
T ss_pred -hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCC
Confidence 4566653 35678888999988888863 46788888765
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=6.8e-10 Score=144.09 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=62.1
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.-..|+|+.| .+..+|+.+. .+|+.|++++|+++.+|.. +++|++|+|++|.+ ..+|.. ..+|+.|+++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~L-tsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCcc-CcccCc---ccccceeecc
Confidence 4556788766 6667887663 4788888888888888753 57788888888864 456643 4577888888
Q ss_pred CCCCCcCChhhcCCCccceecccc
Q 000202 1478 GTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|.++.+|... ++|+.|++.+
T Consensus 271 ~N~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 271 SNPLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred CCchhhhhhch---hhcCEEECcC
Confidence 88887777533 4455665543
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=3.6e-10 Score=147.90 Aligned_cols=114 Identities=27% Similarity=0.398 Sum_probs=80.2
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+...|.+.++.+..+|... .++|+.|+|++| .+..+|..++ .+|++|+|++|.++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 3456777777777777422 246888888776 5667777653 478888888888888877654 46888888888
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
.+ ..+|..+. .+|+.|++++|.++.+|..+. ++|++|++++
T Consensus 252 ~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 252 RI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred cc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 74 46776654 478888888888887776553 3677777654
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=3.1e-09 Score=139.27 Aligned_cols=165 Identities=25% Similarity=0.343 Sum_probs=119.7
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|... +.+|+.|++++| .+..+|..+. .+|+.|+|++|.+..+|..+. .+|++|+|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 46889999999999888532 368999999987 5778887653 579999999999999998775 5899999998
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|++ ..+|..+. .+|++|++++|.++.+|..+. ++|++|+++++. +..+|.. -.++|+.|++
T Consensus 272 N~L-~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~------Lt~LP~~--------l~~sL~~L~L 332 (754)
T PRK15370 272 NKI-SCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS------LTALPET--------LPPGLKTLEA 332 (754)
T ss_pred Ccc-CccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc------cccCCcc--------ccccceeccc
Confidence 875 47887664 589999999999999887654 467888776531 1122221 1246777877
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
+.|.. ..++..+ .++|+.|+++.|.+..++.
T Consensus 333 s~N~L--------t~LP~~l--~~sL~~L~Ls~N~L~~LP~ 363 (754)
T PRK15370 333 GENAL--------TSLPASL--PPELQVLDVSKNQITVLPE 363 (754)
T ss_pred cCCcc--------ccCChhh--cCcccEEECCCCCCCcCCh
Confidence 75432 2233333 2688899998888776543
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=6.4e-08 Score=136.02 Aligned_cols=274 Identities=14% Similarity=0.185 Sum_probs=168.8
Q ss_pred CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCC-------------cc
Q 000202 997 VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKD-------------RE 1062 (1866)
Q Consensus 997 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~-------------~~ 1062 (1866)
...+++.|.|++|.||||++.+... .++.++|+++... .+...+...++..+...... ..
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 3567899999999999999999853 2336889998644 45566777777777421111 01
Q ss_pred CHHHHHHHHHHHhC--CCcEEEEEeCCCCcc--c-hhhhcCCCCCCCCCcEEEEccCChhhhc--cC-CCCcEEEec---
Q 000202 1063 TDAQVAEKLWQVLN--GEKFLLLLDDVWEQI--D-LEAVGIPVPGSENGSKIFMASRELDVCR--NM-DVNMVVKLE--- 1131 (1866)
Q Consensus 1063 ~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--~-~~~l~~~l~~~~~gs~IivTTR~~~v~~--~~-~~~~~~~l~--- 1131 (1866)
+.......+...+. +.+++|||||+.... . .+.+...+.....+.++|||||...-.. .. ......++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 22233333444443 678999999997632 1 1222222223345678889999742211 11 112344555
Q ss_pred -CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhH
Q 000202 1132 -TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDL 1210 (1866)
Q Consensus 1132 -~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i 1210 (1866)
+|+.+|+.++|....+.... .+.+..|.+.|+|.|+++..++..+....... ......+. ......+
T Consensus 184 l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~------~~~~~~~ 251 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLA------GINASHL 251 (903)
T ss_pred CCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhc------CCCchhH
Confidence 99999999999876654322 23456799999999999999988776432100 00011110 0012245
Q ss_pred HHHHHH-hHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhcc--ccc
Q 000202 1211 IELLKF-SFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLIN--EVH 1287 (1866)
Q Consensus 1211 ~~~l~~-Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~--~~~ 1287 (1866)
...+.- -|+.||++ .+..++..|+++ .+. ..+...- -| ...+...++.|.+.+++... +..
T Consensus 252 ~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~-~~l~~~l--~~---------~~~~~~~L~~l~~~~l~~~~~~~~~ 315 (903)
T PRK04841 252 SDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMN-DALIVRV--TG---------EENGQMRLEELERQGLFIQRMDDSG 315 (903)
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHhcccc---cCC-HHHHHHH--cC---------CCcHHHHHHHHHHCCCeeEeecCCC
Confidence 555433 37899987 899999999997 333 2222210 01 12346788999999997532 233
Q ss_pred CcccchhHHHHHHHHHh
Q 000202 1288 NSIRMPGLMKDLAFGIL 1304 (1866)
Q Consensus 1288 ~~~~mhdlv~dla~~i~ 1304 (1866)
..|+.|++++++...-+
T Consensus 316 ~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 316 EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CEEehhHHHHHHHHHHH
Confidence 47889999999987654
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=6.2e-08 Score=121.82 Aligned_cols=249 Identities=16% Similarity=0.145 Sum_probs=142.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++.|+||+.++++|...|... +.....+.|+|.+|+|||++++.+++......+...|+..... .......++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~--~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ--IDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC--cCCCHHHHHHH
Confidence 4568999999999999998542 2234567899999999999999999977665422223322111 12233566677
Q ss_pred HHHHHhccccccCccch--hHHHHHHHhh--cCcEEEEEecCCCH------HHHHHHhhccCCCCCCCE--EEEEccccc
Q 000202 262 LLSKLLNDRNVKNFQNI--SVNFQSKRLA--RKKVLIVFDDVNHP------RQIELLIGRLDRFASGSQ--VIITTRDKQ 329 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~--~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~--IiiTTR~~~ 329 (1866)
++.++............ ....+.+.+. ++.++||||+++.. +.+..+....... ++++ +|.++.+..
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 77776542211111111 1134444443 45689999999863 2344444332222 2334 666666554
Q ss_pred hhccCc-------cceeeecCCCCHHHHHHHHHhhc---CCCCCCChh-HHHHHHHHHHHhCCCcceeeeecccc-----
Q 000202 330 VLTNCE-------VDHIYQMKELVHADAHKLFTQCA---FRGDHLDAG-YTELAHKALKYAQGVPLALKVLGCYL----- 393 (1866)
Q Consensus 330 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~-~~~~~~~i~~~~~GlPLAl~~~g~~L----- 393 (1866)
+..... ....+.+++++.++..+++..++ |......++ .+.+++......|..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332221 12467899999999999998765 222222222 22222322222455777766653221
Q ss_pred cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 394 CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 394 ~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
++ -+.+....+++.+. .....-.+..||.++|.++..+...+
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~ 309 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLL 309 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 14455666665552 12234457899999998877665443
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=2.9e-10 Score=128.74 Aligned_cols=145 Identities=26% Similarity=0.433 Sum_probs=100.4
Q ss_pred EEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccC
Q 000202 1380 IFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1380 l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 1457 (1866)
.+..+..+.++|. .+ +.-..+.|..| .++.+|+..|+.+++||.||||.|.|+.+ |..+..|.+|-.|-+.+++.
T Consensus 51 VdCr~~GL~eVP~--~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA--NLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcccCcc--cCCCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4555566666662 22 23455677777 78888888888888899999998888855 67888888888888777555
Q ss_pred cccCCc-cccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1458 LFVLPP-EVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1458 ~~~lP~-~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+..+|+ .|++|..|+.|.+.-|.+..++. .+..|++|..|.++.. ... .+....+..+..++.+.+.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn------~~q-----~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN------KIQ-----SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch------hhh-----hhccccccchhccchHhhh
Confidence 677775 57888888888888888886654 4778888887776431 111 1222345666777777666
Q ss_pred cCC
Q 000202 1536 VHP 1538 (1866)
Q Consensus 1536 ~~~ 1538 (1866)
.++
T Consensus 197 ~np 199 (498)
T KOG4237|consen 197 QNP 199 (498)
T ss_pred cCc
Confidence 433
No 30
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.80 E-value=7.6e-09 Score=120.14 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=98.6
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH------HHH
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL------RKE 261 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 261 (1866)
|+||+.++++|.+++..+ ..+.+.|+|..|+|||+|++++.+.....-..++|+........ .....+ ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999864 35679999999999999999999977543334455443322111 111111 111
Q ss_pred HHHHHhccccccC----------ccchhHHHHHHHhh--cCcEEEEEecCCCHH-----------HHHHHhhccCCCCCC
Q 000202 262 LLSKLLNDRNVKN----------FQNISVNFQSKRLA--RKKVLIVFDDVNHPR-----------QIELLIGRLDRFASG 318 (1866)
Q Consensus 262 ll~~~~~~~~~~~----------~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~g 318 (1866)
+...+........ ........+.+.+. +++++||+||++... .+..+........+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111211111000 00111122333332 346999999996543 122233332223334
Q ss_pred CEEEEEccccchhcc--------CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 319 SQVIITTRDKQVLTN--------CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+.|+++|. ..+... .+....+.+++|+.+++.+++....-..... +...+..++|+..+||+|..|.
T Consensus 158 ~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 44444444 323222 2233458999999999999998764222111 2235567999999999998653
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=7.6e-08 Score=135.30 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=143.2
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
+|....++|-|..-++.+.. ....+++.|.|++|.||||++.++.++. +.++|+...... .....+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~d---~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDESD---NQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCccc---CCHHHHHH
Confidence 55666788999876666542 2357899999999999999999988643 357888543331 22233444
Q ss_pred HHHHHHhccccc--c-------Ccc-chhHHH---HHHHh-h-cCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNV--K-------NFQ-NISVNF---QSKRL-A-RKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~--~-------~~~-~~~~~~---l~~~L-~-~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.++..+...... . ... ...... +...+ . +.+++|||||+... ...+.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 444444211110 0 000 000111 22222 2 67999999999642 22223322233345677899
Q ss_pred EEccccchhcc--C-ccceeeecC----CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccC
Q 000202 323 ITTRDKQVLTN--C-EVDHIYQMK----ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCG 395 (1866)
Q Consensus 323 iTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~ 395 (1866)
||||...-... . ......++. +|+.+|+.+||...... .. ..+.+.++.+.|+|.|+++..++..+.+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--PI---EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--CC---CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99998532211 1 012345555 99999999999866522 11 2455788999999999999988877654
Q ss_pred CCHHHHHHHHHHhccCCCchhhhhhhc-ccCCCChhhHHHHHHHH
Q 000202 396 RSKEEWESAMRKLEIVPHMEIQEVLKI-SYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 396 ~~~~~w~~~l~~l~~~~~~~i~~~l~~-Sy~~L~~~~k~~~~~l~ 439 (1866)
.... -......+...+...+.+.+.- -|+.||++.+.++..++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a 275 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCS 275 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3210 0111222222223346555433 37899999999998888
No 32
>PF05729 NACHT: NACHT domain
Probab=98.73 E-value=5.7e-08 Score=106.02 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=85.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcccc-----ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFE-----GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQS 284 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~ 284 (1866)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+......... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-----PIEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-----hhHHHHHH
Confidence 57899999999999999999987665542 223333333322222112333333333222111 11111111
Q ss_pred HHhhcCcEEEEEecCCCHHH---------HHHHhh-ccC-CCCCCCEEEEEccccch---hccCccceeeecCCCCHHHH
Q 000202 285 KRLARKKVLIVFDDVNHPRQ---------IELLIG-RLD-RFASGSQVIITTRDKQV---LTNCEVDHIYQMKELVHADA 350 (1866)
Q Consensus 285 ~~L~~k~~LlVlDdv~~~~~---------~~~l~~-~~~-~~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea 350 (1866)
-..+.++++||||++++... +..++. .+. ...++.++|||||.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 22367899999999975322 222221 122 13568999999998766 22333446899999999999
Q ss_pred HHHHHhhc
Q 000202 351 HKLFTQCA 358 (1866)
Q Consensus 351 ~~Lf~~~a 358 (1866)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.71 E-value=3.3e-09 Score=120.39 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=108.1
Q ss_pred CcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEEec
Q 000202 1377 AKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQILIL 1452 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L 1452 (1866)
...+.+..|.|+.+| .|..+++||.|+|++| .+..|.+..|..++.|..|-+-+ |+|+.+| ..+++|..||.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 356788999999999 4789999999999988 78888888889899887776655 8999999 57899999999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecccc
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
.-|++.......+..|++|..|.+-.|.+..++. .+..+..++++++..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 9999777777889999999999999999999988 588899999988754
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=1.3e-09 Score=128.87 Aligned_cols=177 Identities=29% Similarity=0.429 Sum_probs=145.3
Q ss_pred cccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1374 WTHAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
+..-...+++.|.+.++| ....|..|..|.|..| .+..+|..+ +++..|.+|||+.|.++.+|..+|.|+ |+.|.+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 334456788899999999 4567788999999888 477888887 779999999999999999999999988 999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
++|+ ++.+|..++.+..|.+||.+.|.+..+|..++.|.+|+.|.+.. +....+|.. +..| .|..|
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR------n~l~~lp~E------l~~L-pLi~l 216 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR------NHLEDLPEE------LCSL-PLIRL 216 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh------hhhhhCCHH------HhCC-ceeee
Confidence 9998 78999999999999999999999999999999999999998743 334444442 3322 36677
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
+++ +|.+..++..+.++++|+.|-|..|.+..-+.
T Consensus 217 DfS--------cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 217 DFS--------CNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ecc--------cCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 877 45566789999999999999999998876543
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=7.2e-07 Score=105.89 Aligned_cols=180 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV- 1074 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 1074 (1866)
..+..++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..++++.|+..++..... .+.......+.+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3445689999999999999999997653321 11 12233 333457788899999888765332 2222223333322
Q ss_pred ----hCCCcEEEEEeCCCCc--cchhhhcCCC---CCCCCCcEEEEccCChhhhccC----------CCCcEEEecCCCh
Q 000202 1075 ----LNGEKFLLLLDDVWEQ--IDLEAVGIPV---PGSENGSKIFMASRELDVCRNM----------DVNMVVKLETLSM 1135 (1866)
Q Consensus 1075 ----L~~kr~LlVlDdv~~~--~~~~~l~~~l---~~~~~gs~IivTTR~~~v~~~~----------~~~~~~~l~~L~~ 1135 (1866)
..+++++||+||++.. ..++.+.... ........|++|.... ..... .....+.+++|+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 3678899999999874 3455443211 1112223445554432 21111 1134678999999
Q ss_pred HHHHHHHHHHhcCCC---CCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1136 KDAWELFCKEVGGII---QSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~---~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
+|..+++...+.... ...-..+..+.|.+.|+|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999887653221 111124678889999999999999888776
No 36
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.64 E-value=1.9e-06 Score=108.42 Aligned_cols=286 Identities=15% Similarity=0.130 Sum_probs=159.8
Q ss_pred cchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 980 VNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+|+++++++...+. ......+.|+|++|+|||++++.+++........-..+++++....+...++..|+.++.
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 5688888888888772 334456789999999999999999764332222234567777777788899999999987
Q ss_pred cCCC--CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc------chhhhcCCCCCCCCCcE--EEEccCChhhhccCC
Q 000202 1056 LHCK--DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI------DLEAVGIPVPGSENGSK--IFMASRELDVCRNMD 1123 (1866)
Q Consensus 1056 ~~~~--~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--IivTTR~~~v~~~~~ 1123 (1866)
.... ...+..+....+.+.+. ++..+||||+++... .+..+...+.. ..+++ ||.+++...+.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcC
Confidence 5221 22245666677777775 456899999998632 23333222221 12333 566665544322211
Q ss_pred -------CCcEEEecCCChHHHHHHHHHHhcCC----C-CCchHHHHHHHHHHHcCCChHHHHHHHHHh--h--C-C--C
Q 000202 1124 -------VNMVVKLETLSMKDAWELFCKEVGGI----I-QSPDIHLYARAIVKGCCGLPLLTIVTAKAL--A--G-E--R 1184 (1866)
Q Consensus 1124 -------~~~~~~l~~L~~~~a~~Lf~~~~~~~----~-~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L--~--~-~--~ 1184 (1866)
....+.+++++.++..+++..++... . ....++.+++......|..+.|+.++-.+. + . . -
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I 270 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKV 270 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCc
Confidence 12467899999999999998776321 1 122233344444343566777777664432 1 1 1 1
Q ss_pred CHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhc--CCCC-CccccHHHHHHH--HHHcCccch
Q 000202 1185 NVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCS--LFPE-DREVSIVEFIDY--CIQEGIIVG 1259 (1866)
Q Consensus 1185 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s--~Fp~-~~~i~~~~Li~~--W~aeG~i~~ 1259 (1866)
+.+....+.+.. -.....-.+..||.+ +..|++.- .... ...+...++... .+++.+-..
T Consensus 271 ~~~~v~~a~~~~-------------~~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 271 TEEDVRKAYEKS-------------EIVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred CHHHHHHHHHHH-------------HHHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 334444443321 012234457899876 55555532 1221 123444444422 122111000
Q ss_pred hhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1260 TLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1260 ~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.-.......++..|.+.+++..
T Consensus 336 --~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 336 --PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred --cCcHHHHHHHHHHHHhcCCeEE
Confidence 0011234557777777777764
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.62 E-value=1.1e-06 Score=109.24 Aligned_cols=248 Identities=17% Similarity=0.170 Sum_probs=136.7
Q ss_pred cCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc------ceEEEEeeccccccccH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE------GSYFACNVRAAEETGRL 255 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 255 (1866)
.++.|+||+.++++|...|.. .+.....+.|+|++|+|||++++++++.+....+ ..+|+... .....
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCCH
Confidence 345899999999999999874 1223456899999999999999999987654332 12333321 11223
Q ss_pred HHHHHHHHHHHhc--ccc-ccCccch-hHHHHHHHh--hcCcEEEEEecCCCH-----HHHHHHhhcc--CCC-CCCCEE
Q 000202 256 DDLRKELLSKLLN--DRN-VKNFQNI-SVNFQSKRL--ARKKVLIVFDDVNHP-----RQIELLIGRL--DRF-ASGSQV 321 (1866)
Q Consensus 256 ~~l~~~ll~~~~~--~~~-~~~~~~~-~~~~l~~~L--~~k~~LlVlDdv~~~-----~~~~~l~~~~--~~~-~~gs~I 321 (1866)
..++..++.++.. ... ....... ....+.+.+ .+++++||||+++.. +.+..+.... ... +....+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 4566666666642 111 0001100 112333444 356789999999864 1233333221 111 123345
Q ss_pred EEEccccchhccCc-------cceeeecCCCCHHHHHHHHHhhcC---CCCCCChhHHHHHHHHHHHhCCCcc-eeeeec
Q 000202 322 IITTRDKQVLTNCE-------VDHIYQMKELVHADAHKLFTQCAF---RGDHLDAGYTELAHKALKYAQGVPL-ALKVLG 390 (1866)
Q Consensus 322 iiTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPL-Al~~~g 390 (1866)
|.+|.......... ....+.+++.+.+|..+++..++- ......++..+.+.+++....|.|- |+.++-
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55565443321111 124678999999999999987752 2222333334455667777778773 332221
Q ss_pred ccc-----cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 391 CYL-----CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 391 ~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
... .+ -+.+..+.+++.+. .....-+...||.+++.++..+..+.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~ 301 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLA 301 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 11 13344444444432 12233456789998887777665443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=4.7e-08 Score=104.64 Aligned_cols=122 Identities=30% Similarity=0.299 Sum_probs=35.1
Q ss_pred cccCcEEEccCCCCCCCCCCC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh-cCCCCCcEEe
Q 000202 1374 WTHAKMIFFMDNDLQTLPGRP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL-VNLKCLQILI 1451 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L~~L~ 1451 (1866)
...++.|++.+|.+..+..+. .+.+|+.|+|++| .+..++. +..+++|++|++++|+|+.+++.+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 334566666666666655544 3556666666655 4444432 244566666666666666665444 2466666666
Q ss_pred cccccCcccCC--ccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceecc
Q 000202 1452 LRDCDFLFVLP--PEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1452 L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l 1499 (1866)
|++|.+.. +- ..+..+++|++|++.+|++...+. -+..+++|+.|+-
T Consensus 95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66665321 11 234455666666666666554332 1444555555544
No 39
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=1.4e-07 Score=109.49 Aligned_cols=193 Identities=17% Similarity=0.209 Sum_probs=98.8
Q ss_pred cchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHH---------HH
Q 000202 980 VNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQK---------QV 1050 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---------~i 1050 (1866)
|.||++++++|.+.+.....+.+.|+|..|+|||+|++.+.+..... .+ ..+|+...+..+...+.. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 56899999999999987767889999999999999999996533211 11 334444433332222111 11
Q ss_pred HHHhccCCC----------CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc-ch---h----hh---cCCCCCCCCCc
Q 000202 1051 LRQLSLHCK----------DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI-DL---E----AV---GIPVPGSENGS 1107 (1866)
Q Consensus 1051 ~~~l~~~~~----------~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~~---~----~l---~~~l~~~~~gs 1107 (1866)
...+..... ...........+.+.+. +++++||+||+.... .. . .+ ...+....+ -
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN-V 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT-E
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC-c
Confidence 122211100 11122223333444443 345999999997644 11 1 11 112222233 3
Q ss_pred EEEEccCChhhhcc--------CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1108 KIFMASRELDVCRN--------MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1108 ~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+|+++.+..+... .+....+.+++|+.+++++++...+.....-+.-.+...+|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455444444322 122345999999999999999987654411112244568899999999987653
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.56 E-value=1.9e-07 Score=107.97 Aligned_cols=144 Identities=22% Similarity=0.439 Sum_probs=93.1
Q ss_pred ccCCCceeehhhHH---HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIK---EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...+++||.+..+. -|..++.. ..+....+||++|+||||||+.++......|... . .. .....++.
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---s--Av---~~gvkdlr 90 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---S--AV---TSGVKDLR 90 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---c--cc---cccHHHHH
Confidence 33455666665552 24455543 3466788999999999999999999777766421 1 11 11112221
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEE--EccccchhccC-
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVII--TTRDKQVLTNC- 334 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~~- 334 (1866)
+++. +.-+.+..+++.+|++|.|. +..|-+.|++.. ..|.-|+| ||.|+...-..
T Consensus 91 -~i~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 -EIIE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred -HHHH----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 1111 11223346899999999997 677778887664 45777776 77776432211
Q ss_pred --ccceeeecCCCCHHHHHHHHHh
Q 000202 335 --EVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 335 --~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
....++++++|+.+|-.+++.+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHH
Confidence 2357899999999999999887
No 41
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.53 E-value=3.6e-07 Score=110.42 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=121.7
Q ss_pred CCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.+|||++..+++|..++... ......+.++|++|+|||+||++++++....+. ....... .....+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~---~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL---EKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh---cCchhH-HHH
Confidence 47999999999999888631 223456889999999999999999997754331 1111100 001111 111
Q ss_pred HHHHhccc-----cccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccC--c
Q 000202 263 LSKLLNDR-----NVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNC--E 335 (1866)
Q Consensus 263 l~~~~~~~-----~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--~ 335 (1866)
+..+.... +.........+.+...+.+.+..+|+|+..+..++.... .+.+-|..|||...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHhh
Confidence 11111100 000001111123333444445555555544433332211 2245566677765443321 1
Q ss_pred cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHhcc--CCC
Q 000202 336 VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEI--VPH 413 (1866)
Q Consensus 336 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l~~--~~~ 413 (1866)
...++++++++.+|..+++.+.+.... ..-.++....|++.|+|.|-.+..++..+ |... ..... ...
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~it~ 219 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKIINR 219 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCcCH
Confidence 135689999999999999998774322 12235667889999999995543333221 1111 00110 010
Q ss_pred ---chhhhhhhcccCCCChhhHHHHH
Q 000202 414 ---MEIQEVLKISYDSLDDSQKRMHD 436 (1866)
Q Consensus 414 ---~~i~~~l~~Sy~~L~~~~k~~~~ 436 (1866)
......+...|..|++.++.++.
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~ 245 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLS 245 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 11223367778899998777555
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.51 E-value=1.4e-07 Score=114.65 Aligned_cols=233 Identities=14% Similarity=0.150 Sum_probs=121.8
Q ss_pred cccCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+|+|++..++.+..++.. .......+.|+|++|+||||||+.+++.....+. .......... .-
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~~~~----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPALEKP----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccccCh----HH
Confidence 34557899999999999888863 2233567889999999999999999997754331 1111110011 11
Q ss_pred HHHHHHHHhcccc--c---cCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhcc
Q 000202 259 RKELLSKLLNDRN--V---KNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTN 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~--~---~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 333 (1866)
+..++..+....- . ........+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHH
Confidence 1122221110000 0 000000112222333333444444443332221111 1123445667775544322
Q ss_pred C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHhccC
Q 000202 334 C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIV 411 (1866)
Q Consensus 334 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l~~~ 411 (1866)
. .....+++++++.++..+++.+.+.... ..-.++.+..|++.|+|.|-.+..+...+ ..|.... .-...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCCC
Confidence 1 1135689999999999999998774322 22335678899999999994332222211 1121110 00001
Q ss_pred CC---chhhhhhhcccCCCChhhHHHHH
Q 000202 412 PH---MEIQEVLKISYDSLDDSQKRMHD 436 (1866)
Q Consensus 412 ~~---~~i~~~l~~Sy~~L~~~~k~~~~ 436 (1866)
.. ....+.+...+..|++.++..+.
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~ 266 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLR 266 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHH
Confidence 11 12334567788899988887775
No 43
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.51 E-value=1.9e-06 Score=102.26 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=103.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH---
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK--- 285 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~--- 285 (1866)
..++.|+|.+|+|||||++.+++.....=-..+++... .....+++..++..++.... ..........+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHH
Confidence 45789999999999999999998765320112222211 12234566666666543322 1100001112222
Q ss_pred --HhhcCcEEEEEecCCC--HHHHHHHhhccC---CCCCCCEEEEEccccc--hhcc-----C--ccceeeecCCCCHHH
Q 000202 286 --RLARKKVLIVFDDVNH--PRQIELLIGRLD---RFASGSQVIITTRDKQ--VLTN-----C--EVDHIYQMKELVHAD 349 (1866)
Q Consensus 286 --~L~~k~~LlVlDdv~~--~~~~~~l~~~~~---~~~~gs~IiiTTR~~~--v~~~-----~--~~~~~~~l~~L~~~e 349 (1866)
...+++++||+||++. ...++.+..... .......|++|....- .+.. . .....+++++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2367889999999985 344554432211 1122234556654321 0110 0 113467899999999
Q ss_pred HHHHHHhhcCCC--CCCChhHHHHHHHHHHHhCCCcceeeeecccc
Q 000202 350 AHKLFTQCAFRG--DHLDAGYTELAHKALKYAQGVPLALKVLGCYL 393 (1866)
Q Consensus 350 a~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L 393 (1866)
..+++...+... .....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887654211 11112235788999999999999998888765
No 44
>PF05729 NACHT: NACHT domain
Probab=98.49 E-value=4.6e-07 Score=98.81 Aligned_cols=141 Identities=19% Similarity=0.234 Sum_probs=86.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHH---HHHHHHHHHhccCCCCccCHHHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTR---KIQKQVLRQLSLHCKDRETDAQVAEKLW 1072 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 1072 (1866)
+++.|.|.+|+||||+++.++........ +...+|+......... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47899999999999999998654332222 4566677665543322 34444443332211 11111 122
Q ss_pred HH-hCCCcEEEEEeCCCCccc---------hhhhc-CCCCC-CCCCcEEEEccCChhh---hccCCCCcEEEecCCChHH
Q 000202 1073 QV-LNGEKFLLLLDDVWEQID---------LEAVG-IPVPG-SENGSKIFMASRELDV---CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1073 ~~-L~~kr~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~~ 1137 (1866)
.. .+.++++||||++++... +..+. ..++. ..++.+||||+|.... .........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 22 267899999999986322 11111 11221 2468999999998766 3333444689999999999
Q ss_pred HHHHHHHHh
Q 000202 1138 AWELFCKEV 1146 (1866)
Q Consensus 1138 a~~Lf~~~~ 1146 (1866)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987654
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=3.8e-08 Score=120.29 Aligned_cols=85 Identities=20% Similarity=0.088 Sum_probs=48.5
Q ss_pred HhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCc------ccCCccccCCCCCcEEEccCCCCC-cCC
Q 000202 1418 FELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFL------FVLPPEVGSLECLEVLDLRGTEIK-MLP 1485 (1866)
Q Consensus 1418 ~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~------~~lP~~i~~L~~L~~L~l~~~~i~-~lp 1485 (1866)
+..+..|++|++++|.++ .++..+...++|++|+++++... ..++..+.++++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345566777777777663 34555566666777777666533 123344556667777777776665 233
Q ss_pred hhhcCCCc---cceeccccc
Q 000202 1486 KEIGKLTS---LRYLTVFFF 1502 (1866)
Q Consensus 1486 ~~i~~L~~---L~~L~l~~~ 1502 (1866)
..+..+.+ |++|+++.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHHHhccCcccEEEeeCC
Confidence 34444443 666666543
No 46
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.44 E-value=2.5e-05 Score=97.25 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=156.9
Q ss_pred cchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCcccc-ccc---ceEEEEEecCCCCHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVK-VMF---HVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
+.||++++++|...+. ....+.+.|+|++|+|||++++.+++.-... ... -..+|+++....+...++..|+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 96 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELA 96 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHH
Confidence 5688899998888874 2344578999999999999999997532111 111 1346777777777888999999
Q ss_pred HHhc---cCCC-CccCHHHHHHHHHHHhC--CCcEEEEEeCCCCcc-c----hhhhcCCC-CCCC--CCcEEEEccCChh
Q 000202 1052 RQLS---LHCK-DRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQI-D----LEAVGIPV-PGSE--NGSKIFMASRELD 1117 (1866)
Q Consensus 1052 ~~l~---~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~gs~IivTTR~~~ 1117 (1866)
.++. .... ...+..+....+.+.+. +++++||||+++... . +..+.... .... ..-.+|.+|+...
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 97 NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLK 176 (365)
T ss_pred HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcc
Confidence 9984 2211 11234455556666663 567899999998641 1 22222210 1111 2234455555443
Q ss_pred hhccCC-------CCcEEEecCCChHHHHHHHHHHhcC---C-CCCchHHHHHHHHHHHcCCChHHH-HHHHHHh--h--
Q 000202 1118 VCRNMD-------VNMVVKLETLSMKDAWELFCKEVGG---I-IQSPDIHLYARAIVKGCCGLPLLT-IVTAKAL--A-- 1181 (1866)
Q Consensus 1118 v~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~---~-~~~~~~~~~~~~I~~~c~GlPLAi-~~~g~~L--~-- 1181 (1866)
...... ....+.+++++.++..+++..++.. . .-.++..+....++..+.|.|-.+ .++-.+. +
T Consensus 177 ~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 177 FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAER 256 (365)
T ss_pred hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 211111 1246889999999999999887641 1 122333344556777778888443 3222211 1
Q ss_pred C---CCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCC--CCCccccHHHHHHHHH--Hc
Q 000202 1182 G---ERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLF--PEDREVSIVEFIDYCI--QE 1254 (1866)
Q Consensus 1182 ~---~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~F--p~~~~i~~~~Li~~W~--ae 1254 (1866)
. .-+.+..+.+.+.. -.....-+...||.+ .|..+..++.. -.+..+...++...+- ++
T Consensus 257 ~~~~~it~~~v~~a~~~~-------------~~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 257 EGAERVTEDHVEKAQEKI-------------EKDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred cCCCCCCHHHHHHHHHHH-------------HHHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11223333332221 012233456788876 34332222211 1334455555555321 12
Q ss_pred CccchhhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1255 GIIVGTLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1255 G~i~~~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.+ +...........++..|...+++..
T Consensus 323 ~~--~~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 323 DI--GVDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred hc--CCCCCcHHHHHHHHHHHHhcCCeEE
Confidence 11 0011233456677778888888764
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.42 E-value=1.2e-06 Score=100.40 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=86.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|||.+|+|||+||.++++....+...+.|+..... ...... +.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~---------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPA---------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHH---------------------HHhhcc
Confidence 3568999999999999999999987666556667652110 000000 111122
Q ss_pred cCcEEEEEecCCCH---HHHH-HHhhccCCC-CCCCEEEEEcccc----------chhccCccceeeecCCCCHHHHHHH
Q 000202 289 RKKVLIVFDDVNHP---RQIE-LLIGRLDRF-ASGSQVIITTRDK----------QVLTNCEVDHIYQMKELVHADAHKL 353 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~IiiTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~L 353 (1866)
+.-+|||||++.. .+|+ .+...+... ..|+.+||||.+. .+...+....++++++++.++.+++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 2348999999852 3333 222222211 2356665554433 4444444456889999999999999
Q ss_pred HHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 354 FTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 354 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.+.++...- .-.++...-|++.+.|-.
T Consensus 170 L~~~a~~~~l--~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 170 LQRNAYQRGI--ELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCH
Confidence 9988863321 122455666777666544
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.37 E-value=1.1e-05 Score=97.70 Aligned_cols=270 Identities=12% Similarity=0.114 Sum_probs=143.5
Q ss_pred cccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+|+|+++.++.+..++. ......+.++|++|+|||+||+.+.+... ..+ ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHHH
Confidence 357888888887777763 23345688999999999999999965322 121 1111111111112 222223
Q ss_pred HhccCCC------CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC--CC
Q 000202 1053 QLSLHCK------DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM--DV 1124 (1866)
Q Consensus 1053 ~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--~~ 1124 (1866)
.+..... +.-. ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+.... ..
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhhc
Confidence 3322110 1011 1234456667777777788887665544432 122 245566677765443321 12
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccccc
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEE 1204 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~ 1204 (1866)
...+.+++++.++..+++.+.+......- -.+....|++.|+|.|-.+..++..+ |..+...-... ...
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~--it~ 219 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI--INR 219 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC--cCH
Confidence 35789999999999999998775332211 23456779999999996655444432 22211000000 000
Q ss_pred cchhhHHHHHHHhHhccCCcchhHHHH-hhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHH-HHHHhhhhh
Q 000202 1205 CCTEDLIELLKFSFDQLKDHDVKSCFL-HCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVD-VLVDASLLL 1282 (1866)
Q Consensus 1205 ~~~~~i~~~l~~Sy~~L~~~~lk~cfl-y~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~-~L~~~sll~ 1282 (1866)
.........+..+|..|+.+ -+..+. .++.++.+ .+....+.... | ......+..++ .|++++|+.
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g-------~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G-------EDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C-------CCcchHHHhhhHHHHHcCCcc
Confidence 01122333355567778765 233333 33555433 34443332211 1 12334556667 699999996
Q ss_pred c
Q 000202 1283 I 1283 (1866)
Q Consensus 1283 ~ 1283 (1866)
.
T Consensus 288 ~ 288 (305)
T TIGR00635 288 R 288 (305)
T ss_pred c
Confidence 4
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.36 E-value=7.6e-06 Score=95.02 Aligned_cols=207 Identities=18% Similarity=0.184 Sum_probs=117.1
Q ss_pred HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhccCCCCccCHHHHH
Q 000202 990 IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLSLHCKDRETDAQVA 1068 (1866)
Q Consensus 990 i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~ 1068 (1866)
|.+.+....+...-.||++|+||||||+.+.. .....|. .++-.. +++++ +.+ .
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdl-r~i-----------------~ 93 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDL-REI-----------------I 93 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHH-HHH-----------------H
Confidence 44555667777788999999999999999943 3333343 222221 22222 222 2
Q ss_pred HHH-HHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE--ccCChhhh---ccCCCCcEEEecCCChHHHHH
Q 000202 1069 EKL-WQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM--ASRELDVC---RNMDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1069 ~~l-~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~---~~~~~~~~~~l~~L~~~~a~~ 1140 (1866)
+.- .....|++.+|++|.|.. ..+-+.+. |...+|.-|+| ||-+.... .-..-..+|.+++|+.+|-.+
T Consensus 94 e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~ 170 (436)
T COG2256 94 EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKK 170 (436)
T ss_pred HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHH
Confidence 222 233458999999999975 45555554 44567887777 56555431 111224799999999999999
Q ss_pred HHHHHhcCCC-----CCchH-HHHHHHHHHHcCCChHHHHHHH---HHhhCCC---CHHHHHHHhhhCCCCccccccchh
Q 000202 1141 LFCKEVGGII-----QSPDI-HLYARAIVKGCCGLPLLTIVTA---KALAGER---NVSVWKHASRKFSLPITIEECCTE 1208 (1866)
Q Consensus 1141 Lf~~~~~~~~-----~~~~~-~~~~~~I~~~c~GlPLAi~~~g---~~L~~~~---~~~~w~~~~~~~~~~~~~~~~~~~ 1208 (1866)
++.+.+.... ....+ ++.-..++..++|.--++-... ..+.... ..+..+.++..-........+..-
T Consensus 171 ~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hY 250 (436)
T COG2256 171 LLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHY 250 (436)
T ss_pred HHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHH
Confidence 9988542211 11112 3355668888888754433222 2222211 234444444322111111223345
Q ss_pred hHHHHHHHhHhccCCc
Q 000202 1209 DLIELLKFSFDQLKDH 1224 (1866)
Q Consensus 1209 ~i~~~l~~Sy~~L~~~ 1224 (1866)
++.++|.-|-..=.++
T Consensus 251 dliSA~hKSvRGSD~d 266 (436)
T COG2256 251 DLISALHKSVRGSDPD 266 (436)
T ss_pred HHHHHHHHhhccCCcC
Confidence 6777887777776544
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=6.3e-08 Score=105.68 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=103.5
Q ss_pred ccccccCcEEEccCCCCCCCCCCC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGRP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
...|+.|+.+++++|.+..+.... -.+.++.|++++| .+..+.. ...+++|..||||+|.++++-..=.+|-|.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 456899999999999998877543 4689999999998 4555544 47789999999999998887766678889999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceecccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~ 1501 (1866)
|.|++|.+ ..+ +.+++|.+|..||+++|+|..+. .+||+|+.|++|.+.+
T Consensus 357 L~La~N~i-E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 357 LKLAQNKI-ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eehhhhhH-hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 99999974 343 57889999999999999999774 4699999999998743
No 51
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.32 E-value=2.6e-05 Score=98.69 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=175.0
Q ss_pred HHHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCC------
Q 000202 989 KIFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKD------ 1060 (1866)
Q Consensus 989 ~i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~------ 1060 (1866)
++++.|.+ .+.+.+.|..++|.|||||+.+... . ...=..+.|.+.... .+...+.+.++..++.-...
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 45566644 3678999999999999999999843 1 122346789998765 56777888888888642221
Q ss_pred -------ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc------cchhhhcCCCCCCCCCcEEEEccCChhhhccCC--
Q 000202 1061 -------RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ------IDLEAVGIPVPGSENGSKIFMASRELDVCRNMD-- 1123 (1866)
Q Consensus 1061 -------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-- 1123 (1866)
..+...+...+...|. .+++++||||-.-. ....-+.. ....+-..|||||+..-+....
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~---~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK---HAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH---hCCCCeEEEEEeccCCCCccccee
Confidence 1223334455555454 35899999997532 12233333 3345778999999865433211
Q ss_pred -CCcEEEec----CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCC
Q 000202 1124 -VNMVVKLE----TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSL 1198 (1866)
Q Consensus 1124 -~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~ 1198 (1866)
.+...++. .++.+|+-++|....+..-+. .-++.+.+...|-+-|+..++=.++...+.+.-...+..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG--- 252 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG--- 252 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---
Confidence 12233333 478899999888765433222 235667888888888888887777743333222211110
Q ss_pred CccccccchhhHHHHH-HHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHH
Q 000202 1199 PITIEECCTEDLIELL-KFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVD 1277 (1866)
Q Consensus 1199 ~~~~~~~~~~~i~~~l-~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~ 1277 (1866)
..+.|...| .=-++.||++ +|.-++-||+++.- -.+|+..-. -++.|..++++|.+
T Consensus 253 -------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f----~~eL~~~Lt-----------g~~ng~amLe~L~~ 309 (894)
T COG2909 253 -------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF----NDELCNALT-----------GEENGQAMLEELER 309 (894)
T ss_pred -------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh----hHHHHHHHh-----------cCCcHHHHHHHHHh
Confidence 011222222 2246789987 89998899998642 123332221 23567889999999
Q ss_pred hhhhh--cccccCcccchhHHHHHHHHH
Q 000202 1278 ASLLL--INEVHNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1278 ~sll~--~~~~~~~~~mhdlv~dla~~i 1303 (1866)
++++. .++....|+.|.++.||-+.-
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhh
Confidence 99997 356678899999999997643
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.31 E-value=7.7e-08 Score=114.33 Aligned_cols=131 Identities=29% Similarity=0.348 Sum_probs=115.1
Q ss_pred CCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1367 EPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1367 ~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.+.....+..+..++++.|.++.+|.-...--|++|.+++| .++.+|+.+ +.+..|..||.+.|.+..+|..++.|..
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC-ccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 34556778888999999999999996555556999999966 899999998 6899999999999999999999999999
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|+.|.++.|+ +..+|..++. -.|..||+++|+|..+|-.|.+|+.||+|.|.+
T Consensus 191 lr~l~vrRn~-l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 191 LRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHHHHhhhh-hhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 9999999998 5678888884 478999999999999999999999999998854
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.28 E-value=3.8e-06 Score=105.20 Aligned_cols=173 Identities=18% Similarity=0.333 Sum_probs=103.4
Q ss_pred ccCCCceeehhhHHH---HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKE---IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...+++||.+..+.. +..++..+ ....+.++|.+|+||||||+.+++.....|.. +. .. ...... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~--a~---~~~~~~-i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS--AV---TSGVKD-L 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee--cc---cccHHH-H
Confidence 345679999988766 78777643 34568889999999999999999876554421 11 11 001111 1
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEE--Eccccchh--cc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVII--TTRDKQVL--TN 333 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~--~~ 333 (1866)
++++.... .....+++.+|+||+++. ..+.+.++..+. .|..++| ||.+.... ..
T Consensus 78 r~ii~~~~----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 REVIEEAR----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHH----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 11111110 011245788999999984 456666666543 3555555 34443211 11
Q ss_pred -CccceeeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCCcce
Q 000202 334 -CEVDHIYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 334 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLA 385 (1866)
.....++++++++.++..+++.+.+....... .-..+....+++.++|.|..
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 12236789999999999999987542211100 22345677788888887754
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=1.1e-06 Score=94.34 Aligned_cols=112 Identities=26% Similarity=0.311 Sum_probs=56.2
Q ss_pred CCCCCCCcc-ccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC--hh
Q 000202 1364 GLTEPPSEE-EWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~-~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp--~~ 1440 (1866)
.++...... .+.+++.|++++|.+..++.+..+++|++|++++| .+..+++.+...+++|+.|+|++|+|..+- ..
T Consensus 30 ~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 30 QISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp ------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred ccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHH
Confidence 333333343 46789999999999999999999999999999988 677887666567899999999999998654 57
Q ss_pred hcCCCCCcEEecccccCcccCCc----cccCCCCCcEEEcc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPP----EVGSLECLEVLDLR 1477 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~----~i~~L~~L~~L~l~ 1477 (1866)
+..+++|+.|+|.+|++... +. -+..+++|+.||-.
T Consensus 109 L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred HHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 78899999999999986533 43 46778999999854
No 55
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.27 E-value=1e-06 Score=107.67 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCC-----cCChh
Q 000202 1422 TSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIK-----MLPKE 1487 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~-----~lp~~ 1487 (1866)
++|+.|+|++|.++ .++..+..+.+|++|++++|.+.+ .++..+..+++|++|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555544 223334444555555555554331 12223333445555555555443 12233
Q ss_pred hcCCCccceecccc
Q 000202 1488 IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1488 i~~L~~L~~L~l~~ 1501 (1866)
+.++++|++|++++
T Consensus 217 ~~~~~~L~~L~ls~ 230 (319)
T cd00116 217 LASLKSLEVLNLGD 230 (319)
T ss_pred hcccCCCCEEecCC
Confidence 44445555555543
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.27 E-value=7e-06 Score=99.84 Aligned_cols=272 Identities=11% Similarity=0.091 Sum_probs=142.2
Q ss_pred cccccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 1050 (1866)
.+..++|+++.++.+...+. ......+.++|++|+||||||+.+.+.... .+ .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHH
Confidence 44567888887777665552 233557889999999999999999654322 11 111111 11111222333
Q ss_pred HHHhccCCC------CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC--
Q 000202 1051 LRQLSLHCK------DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM-- 1122 (1866)
Q Consensus 1051 ~~~l~~~~~------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~-- 1122 (1866)
+..+..... +... ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..||+...+....
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 333322110 0000 1223345556666667777776554332211 111 234566677755443221
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCccc
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITI 1202 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~ 1202 (1866)
.....+++++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+. .|...... .. .
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~--I 238 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV--I 238 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC--C
Confidence 123578999999999999999887643211 1234578899999999954444443321 22211100 00 1
Q ss_pred cccchhhHHHHHHHhHhccCCcchhHHHH-hhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHH-HHHHhhh
Q 000202 1203 EECCTEDLIELLKFSFDQLKDHDVKSCFL-HCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVD-VLVDASL 1280 (1866)
Q Consensus 1203 ~~~~~~~i~~~l~~Sy~~L~~~~lk~cfl-y~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~-~L~~~sl 1280 (1866)
...........+...|..|++. -+.-+. ....|+.+ .+..+.+.... | ......+..++ .|++.+|
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-------~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-------EERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-------CCcchHHHHhhHHHHHcCC
Confidence 1111223344456667778765 344442 55566655 45544442211 1 12233444445 7999999
Q ss_pred hhc
Q 000202 1281 LLI 1283 (1866)
Q Consensus 1281 l~~ 1283 (1866)
++.
T Consensus 307 i~~ 309 (328)
T PRK00080 307 IQR 309 (328)
T ss_pred ccc
Confidence 864
No 57
>PRK06893 DNA replication initiation factor; Validated
Probab=98.21 E-value=6.6e-06 Score=94.20 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=90.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.+.+||..|+|||+|++++++.... ....+.|+++... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~--~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL--NQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 456889999999999999999764222 2234456665321 00000 1111222 2
Q ss_pred cEEEEEeCCCC---ccchhh-hcCCCCC-CCCCcEEEE-ccCC---------hhhhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1079 KFLLLLDDVWE---QIDLEA-VGIPVPG-SENGSKIFM-ASRE---------LDVCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1079 r~LlVlDdv~~---~~~~~~-l~~~l~~-~~~gs~Iiv-TTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
.-+|||||++. ..+|+. +...+.. ...|+.+|| |++. ..+...+....+++++++++++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 34899999996 344552 2221211 123556655 4443 3556666666799999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+....- .--++...-|++.+.|..-++..+-.
T Consensus 172 ~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 172 RNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 88753321 11234556688888877655544433
No 58
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.18 E-value=5.5e-06 Score=95.29 Aligned_cols=92 Identities=28% Similarity=0.439 Sum_probs=76.5
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCccc--------
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYAS-------- 82 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~-------- 82 (1866)
.+...|||||||..- -+..++-+...|.-+|++||+|- .+..|. +...+.+.|..++-+|.|+|||..+
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 457899999997764 35678878778899999999997 777776 5578999999999999999999864
Q ss_pred chhhHHHHHHHHHHHhhCCCEEEEEEE
Q 000202 83 SKWCLDELLKILECKRNYGQIVIPVFY 109 (1866)
Q Consensus 83 s~~c~~El~~~~~~~~~~~~~v~pvf~ 109 (1866)
-.|.-.|++.+++|.+ -+||||-
T Consensus 687 eDWVHKEl~~Afe~~K----NIiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK----NIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcC----Ceeeeec
Confidence 3588889999998864 4999994
No 59
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=3.9e-05 Score=93.23 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=114.7
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc--cceEEEEeeccccccccHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l 258 (1866)
.|....+++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|.++++.+-.+= .....-........... ...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-HPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC-ChH
Confidence 34566789999999999999888653 355688999999999999999998653211 10000000000000000 000
Q ss_pred HHHHHHHHhc----------cccccCccchhHHHHHH---Hh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCCCC
Q 000202 259 RKELLSKLLN----------DRNVKNFQNISVNFQSK---RL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFASG 318 (1866)
Q Consensus 259 ~~~ll~~~~~----------~~~~~~~~~~~~~~l~~---~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~g 318 (1866)
.+.+...... +...........+.+++ .+ .+.+-++|+|+++ +......++..+....++
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000000 00000001111223333 22 2466789999997 466677777776665567
Q ss_pred CEEEEEccccchh-ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 319 SQVIITTRDKQVL-TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 319 s~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
+.+|++|.+.+-. ... .....+.+.+++.++..+++...... .. .+....+++.++|.|+....
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHH
Confidence 7788888766432 221 23568999999999999999875411 11 12236789999999985443
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.3e-07 Score=104.54 Aligned_cols=189 Identities=20% Similarity=0.250 Sum_probs=117.1
Q ss_pred ccccccCcEEEccCCCCCCCCC----CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC--CCChhhcCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG----RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK--SLPETLVNL 1444 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~----~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~--~lp~~i~~L 1444 (1866)
...+++++.|+++.|-+..... ...+++|+.|+|+.|..........-..+++|+.|.|+.|.++ .+-..+-.+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4457788888888887664322 2467888888888885444444434446788888888888887 344455667
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
++|..|+|.+|.....--.+...++.|+.|||++|++...| ..++.|+.|+.|+++.++-. .+..+. .-+...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~----si~~~d-~~s~~k 296 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA----SIAEPD-VESLDK 296 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc----hhcCCC-ccchhh
Confidence 88888888888544433344556778899999998888776 45788888888888665421 111111 001122
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCc
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 1570 (1866)
...+++|+.|++..++.. .|. ....+..+++|+.|.+..|.+
T Consensus 297 t~~f~kL~~L~i~~N~I~-~w~-----sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIR-DWR-----SLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hcccccceeeecccCccc-ccc-----ccchhhccchhhhhhcccccc
Confidence 345667777777644321 121 233445555666666555443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=1.2e-07 Score=109.21 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=89.2
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
+..|+.|..++|..+....-.. .....++|+.|.++.|..++......+. -..+.|+.+.+..|.........+...
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWA--LGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHH--HhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhhhHhhhcc
Confidence 4566667777776654432211 2334577777777777666543222211 146778888888886544431223446
Q ss_pred hccccceeeeccccccceecccCccc-cccccCCCCcCEEeccCCccccccc---cCCCCCccEEEEEcCccccccC
Q 000202 1741 FLAKLEELTVEYCLAVKSIILDGEIT-YSSCIMLPSLKKLRLHHLPELANIW---RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~~l~~~~~~~-~~~~~~lp~L~~L~L~~c~~L~~i~---~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+++.|+.|.+++|..++.- |... .........|..|.|.+||....-- ...+++||.+.+.+|..+.+-|
T Consensus 370 ~C~~lr~lslshce~itD~---gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDE---GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred CCchhccCChhhhhhhhhh---hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 7888899999888766443 1000 1122356778889999998764331 1257889999999988887544
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.6e-05 Score=102.90 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=113.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-c-c-ceEEEEeec------------
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-F-E-GSYFACNVR------------ 247 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~~~~~~~------------ 247 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+... . . ..|..+...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 345689999999999999887542 24556899999999999999999976432 1 0 011111000
Q ss_pred ccccc-ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE
Q 000202 248 AAEET-GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT 324 (1866)
Q Consensus 248 ~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT 324 (1866)
+.+.. ..-.+..+++...+ ...-..+++-++|||+++ +.+..+.|+..+.......++|++
T Consensus 92 EidAas~~kVDdIReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 92 EVDAASRTKVDDTRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred EeccccccCHHHHHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 00000 00001111111111 011124677899999997 467788888887766677777776
Q ss_pred ccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 325 TRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 325 TR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
|.+.+ +.... .....|++++|+.++..+.+.+.+-... .....+.+..|++.++|.|-
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 66543 33221 2247899999999999988877552211 12234567889999999774
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=2.1e-05 Score=99.89 Aligned_cols=185 Identities=14% Similarity=0.127 Sum_probs=109.5
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+... +.. ..+ ..-....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PC----G~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPC----GVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCC----cccHHHH
Confidence 345679999999999999998543 34566799999999999999999865321 100 000 0000000
Q ss_pred HHHHHHhccccccC---ccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 261 ELLSKLLNDRNVKN---FQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~---~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+... ...+..+ ..+...+.+++. ..++.-++|||+++. ...++.++..+.......++|+||++
T Consensus 81 ~I~~G--~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 81 EIDEG--RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HHhcC--CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 00000 0000000 000001111111 123455888999984 45577787777666668888888877
Q ss_pred cchhc-cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 328 KQVLT-NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 328 ~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+-.. .. .....++++.++.++..+.+.+.+.... ..-..+....|++.++|..
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSM 214 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 64332 11 2346899999999999998887663222 1223456777888888854
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=2e-06 Score=108.28 Aligned_cols=174 Identities=27% Similarity=0.344 Sum_probs=100.2
Q ss_pred cccCcEEEccCCCCCCCCCCCCCC--cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEe
Q 000202 1374 WTHAKMIFFMDNDLQTLPGRPSCP--NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILI 1451 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~~~~~~--~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 1451 (1866)
++.+..+.+.+|.+..++...... +|+.|++++| .+..+|..+ +.++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 345666666666666666544443 6666666665 455554333 556666666666666666666666666666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
+++|. +..+|..++.+..|++|.+++|.+..+|..+.++.++..|.+... ....+ ...+..+.+|+.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n------~~~~~------~~~~~~l~~l~~ 259 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN------KLEDL------PESIGNLSNLET 259 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc------eeeec------cchhccccccce
Confidence 66666 455666555555666666666655555556666666666653221 11110 123455666777
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
|+++.+... .+.. +..+.+|+.|+++.+.+.
T Consensus 260 L~~s~n~i~--------~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 260 LDLSNNQIS--------SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ecccccccc--------cccc-ccccCccCEEeccCcccc
Confidence 766633221 1222 566667777777666543
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.8e-05 Score=95.58 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=108.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---------------------ceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---------------------GSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~ 241 (1866)
....+++|-+..++.+...+..+. -.+.+.++|..|+||||+|+.+++.+..... ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 345679999999999999887542 3567889999999999999999986542110 000
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++... .... .+-.+++...+... -..+++-++|+|+++. ...++.++..+....+..
T Consensus 92 ~~~~~----~~~~-v~~ir~i~~~~~~~----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 92 EIDAA----SRTK-VEEMREILDNIYYS----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred Eeccc----ccCC-HHHHHHHHHHHhcC----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 11000 0000 00011111111000 0123456899999985 345677777776656677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+.+ +.... .....+++++++.++..+.+...+-.... .-.++.+..|++.++|.|-
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 7777775543 32221 22468999999999998888765532221 1224556778888888764
No 66
>PLN03150 hypothetical protein; Provisional
Probab=98.13 E-value=4.6e-06 Score=109.73 Aligned_cols=101 Identities=24% Similarity=0.371 Sum_probs=79.8
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
.+..|+|++|.....+|..+ +.+++|++|+|++|.+. .+|..++.+.+|++|+|++|.+.+.+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 36677787775555667665 77889999999999887 78888999999999999999888888988999999999999
Q ss_pred cCCCCC-cCChhhcCC-Cccceecc
Q 000202 1477 RGTEIK-MLPKEIGKL-TSLRYLTV 1499 (1866)
Q Consensus 1477 ~~~~i~-~lp~~i~~L-~~L~~L~l 1499 (1866)
++|.++ .+|..++.+ .++..+++
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred cCCcccccCChHHhhccccCceEEe
Confidence 998887 778877653 34444444
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.12 E-value=2.4e-05 Score=96.35 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=105.2
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cc-eEEEEeeccccccccHHHHHH-
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EG-SYFACNVRAAEETGRLDDLRK- 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~~- 260 (1866)
...+++|++..++.+..++..+ ....+.++|.+|+||||+|+++++.+.... .. .+++....-..... ..+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhhcC
Confidence 3467999999999999988754 334578999999999999999998764332 22 22332111000000 00000
Q ss_pred -HHHHHHhccccccCccchhHHHHHH----Hh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 261 -ELLSKLLNDRNVKNFQNISVNFQSK----RL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 261 -~ll~~~~~~~~~~~~~~~~~~~l~~----~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
.... ...... .........+++ .. ...+-+||+||++. ......+...+......+++|+||.+.
T Consensus 89 ~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 89 PRFAH-FLGTDK--RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred cchhh-hhhhhh--hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0000 000000 000001111221 11 13345899999974 333444554444445567888887543
Q ss_pred c-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 329 Q-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 329 ~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
. +.... .....+++.+++.++..+.+...+-.... .-..+....+++.++|.+-.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 2 22211 22357889999999998888876532221 12245677788888876543
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.12 E-value=2.6e-05 Score=85.16 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=95.7
Q ss_pred cccCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|...++|||.+..++.+.-++.. ......-+.+||++|+||||||.-+++.....|. +.. ... -....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~---i~k~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPA---IEKAGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chh---hhhHHHH
Confidence 44567899999999988766652 2334667899999999999999999998877763 111 111 0011111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCC--------CCCCCE--------
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDR--------FASGSQ-------- 320 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~--------~~~gs~-------- 320 (1866)
.. +...++ ++-+|.+|.+.. ..+-+.|.+...+ .+++.|
T Consensus 93 ~~----------------------il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 AA----------------------ILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH----------------------HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH----------------------HHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 111122 345778899974 4555555554332 122222
Q ss_pred ---EEEEccccchhccCcc--ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 321 ---VIITTRDKQVLTNCEV--DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 321 ---IiiTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
|=.|||...+..-... ..+.+++..+.+|-.+...+.+..-. .+-.++.+.+|++.+.|-|-
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChH
Confidence 3358887655433322 34568999999999999987763222 23346778999999999884
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=6.1e-07 Score=98.18 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1422 TSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
..|..||||+|.|+.+-+++.-++.++.|++++|.+... .++..|++|++|||++|.++++-..-.+|-|.++|.+..
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 457888888888888888888888888888888875432 347777888888888887776655555666677776642
Q ss_pred ccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHH
Q 000202 1502 FGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE 1575 (1866)
Q Consensus 1502 ~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 1575 (1866)
. .+- ...++++|-+|..|++..+.... -.....+++++.|+.|.+..|.+..+.+
T Consensus 362 N------~iE-------~LSGL~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 N------KIE-------TLSGLRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h------hHh-------hhhhhHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCCccccch
Confidence 1 011 11235666677777776433211 0123567888888988888888766543
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.10 E-value=2.1e-05 Score=90.69 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=97.1
Q ss_pred CCCcee--ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 185 SKDLIG--VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 185 ~~~~vG--r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.++|++ .+..++.+.+++.. .....|.|+|.+|+|||+||+.++++........+|+.. .. +....
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~---------~~~~~ 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AE---------LAQAD 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HH---------HHHhH
Confidence 345662 44567777777643 245678999999999999999999876544334444431 11 00000
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----HHHHHhhccCC-CCCCCEEEEEccccch-------
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----QIELLIGRLDR-FASGSQVIITTRDKQV------- 330 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~v------- 330 (1866)
. . +...+.+ .-+|||||++... ..+.+...+.. ...+.++|+||+....
T Consensus 82 -~----------------~-~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 82 -P----------------E-VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred -H----------------H-HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 0 0011222 2389999997432 12333322211 1234589999885421
Q ss_pred --hccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 331 --LTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 331 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
.........+++++++.++...++...+-.... .-..+....+++.++|+|..+.-
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~ 200 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMA 200 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHH
Confidence 111122357899999999988888765421111 11235567777778887765443
No 71
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=98.09 E-value=1.6e-06 Score=54.82 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=19.0
Q ss_pred CeeEEEcCCCCCcccCCCcc
Q 000202 534 NLVSLKMWDGKVKERWDDVQ 553 (1866)
Q Consensus 534 ~l~~l~l~~s~~~~lw~~~~ 553 (1866)
+||+|+||+|+|++||+|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 69999999999999999986
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=2.6e-05 Score=97.88 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=110.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc-eEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG-SYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-.. .--+. . ...........
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~----~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-A----QPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-C----CCCcccHHHHH
Confidence 345679999999999999998543 34567899999999999999999865331000 00000 0 00000000000
Q ss_pred HHHHHhccccccCc---cchhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 262 LLSKLLNDRNVKNF---QNISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 262 ll~~~~~~~~~~~~---~~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
+... ...+...+ .+...+.+++. ..++.-++|||+++ +....+.|+..+.....+.++|++|.+.
T Consensus 87 I~aG--~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 87 IDAG--RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHcC--CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 0000 00000000 00011111111 23456689999998 4567788888777656677766655544
Q ss_pred -chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 -QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 -~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....++++.++.++..+.+.+.+-... .....+..+.|++.++|.|.
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMR 220 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 443222 2246789999999999988876653221 11223456778999999875
No 73
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.08 E-value=1.4e-06 Score=101.98 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=146.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..+.+.++|.|||||||++.++.. +...|+..+++.+...........-. +...+. -.. .........+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~---~ag~~g-l~~--~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPT---LAGALG-LHV--QPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHH---HHhhcc-ccc--ccchHHHHHHHHHH
Confidence 467899999999999999999999 88899888888777664333222111 111111 111 01112224566778
Q ss_pred hcCcEEEEEecCCCHH-HHHHHhhccCCCCCCCEEEEEccccchhccCccceeeecCCCCHH-HHHHHHHhhcCCCC---
Q 000202 288 ARKKVLIVFDDVNHPR-QIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQMKELVHA-DAHKLFTQCAFRGD--- 362 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~--- 362 (1866)
.+++.++|+||-.... +-..+...+....+.-+|+.|+|..-.. ..+..+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 8999999999987532 3333444444445667899999976433 34567888888877 79999976653111
Q ss_pred CCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH----HhccC------CCchhhhhhhcccCCCChhhH
Q 000202 363 HLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR----KLEIV------PHMEIQEVLKISYDSLDDSQK 432 (1866)
Q Consensus 363 ~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~Sy~~L~~~~k 432 (1866)
...........+|++...|.||+|..+++..+.....+-.+.++ .+... ........+..||.-|+.-++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 12233456688999999999999999999998876655433333 22211 123356778888888888777
Q ss_pred HHHHHHH
Q 000202 433 RMHDLLR 439 (1866)
Q Consensus 433 ~~~~~l~ 439 (1866)
-.+.-|+
T Consensus 243 ~~~~rLa 249 (414)
T COG3903 243 ALFGRLA 249 (414)
T ss_pred HHhcchh
Confidence 6666665
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=2.1e-05 Score=98.97 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=109.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+...+.|..++..+. -...+.++|..|+||||+|+.+++.+-.... ... ..+... ...+.+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-~pCg~C----~sC~~I 81 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-TPCEVC----ATCKAV 81 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-CCCccC----HHHHHH
Confidence 345689999999999999998543 3467899999999999999999986532110 000 000000 000000
Q ss_pred HHHHhccccccC---ccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 263 LSKLLNDRNVKN---FQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 263 l~~~~~~~~~~~---~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.. +...+... ......+.+++. ..+++-++|+|+|+. ....+.++..+....++.++|++|.+.+
T Consensus 82 ~~--g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 82 NE--GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred hc--CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 00 00000000 000001111111 235667899999984 5567777777766566778888876643
Q ss_pred hhc-c-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 330 VLT-N-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 330 v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
-.. . ......+++++++.++..+.+.+.+-... ..-..+....|++.++|-+
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSL 213 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 221 1 12346889999999999888876653222 1223455677888888754
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.07 E-value=2.9e-05 Score=94.01 Aligned_cols=181 Identities=12% Similarity=0.180 Sum_probs=104.8
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
|....+++|.+..++.|..++..+. ..-+.++|.+|+||||+|..+++.+.. .|...+.-.+... ... .+..+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd---~~~-~~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD---DRG-IDVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc---ccc-HHHHH
Confidence 3445678999998998988877542 334679999999999999999997633 3332211111100 001 11222
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~ 336 (1866)
+.......... .. -.++.-++|||+++. ...-..+...+...++.+++|+|+... .+.... ..
T Consensus 83 ~~i~~~~~~~~--~~-----------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKV--TL-----------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhccc--cC-----------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22221111100 00 023456899999984 344455555555556678888777543 222211 12
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..++++++++.++....+...+-..... -..+....|++.++|-.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 3578999999999988887766322211 12345677778777644
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4e-05 Score=96.97 Aligned_cols=190 Identities=15% Similarity=0.146 Sum_probs=111.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .++..|+.+.....-......++
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv-- 87 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV-- 87 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce--
Confidence 344679999999999998888643 3456799999999999999999986642 23334443321110000000000
Q ss_pred HHHHHHhccccccCccchhHHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLT 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 332 (1866)
..+... . ...-.....+.+. ..+++-++|||+++. ...++.++..+....+...+|++|... .+..
T Consensus 88 ---~el~~~-~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 88 ---LEIDAA-S--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ---EEeccc-c--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 000000 0 0000000112221 234566899999984 456777877776655666666666443 3322
Q ss_pred cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 333 NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 333 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.. .....+++.+++.++..+.+.+.+-.... .-..+.+..|++.++|.+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAM 211 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 22 23468999999999999999876633221 113456788899998866
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.06 E-value=7e-05 Score=93.92 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=99.6
Q ss_pred ccchhhHHHHH---HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 979 AVNYTQRNVRK---IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 979 ~~~~~~~~~~~---i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
.++|+++.+.. +.+.+.......+.++|++|+||||||+.+++.. ...| +.++.......-.+.+.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ii~--- 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLREVIE--- 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHHHHH---
Confidence 45555554433 5566666666778899999999999999996532 2222 222221111111122221
Q ss_pred cCCCCccCHHHHHHHHHHH-hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE--ccCChhh--hc-cCCCCcE
Q 000202 1056 LHCKDRETDAQVAEKLWQV-LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM--ASRELDV--CR-NMDVNMV 1127 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v--~~-~~~~~~~ 1127 (1866)
..... ..+++.+|++|+++.. .+.+.+...+. .|..+++ ||.+... .. ...-..+
T Consensus 83 --------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~ 145 (413)
T PRK13342 83 --------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQV 145 (413)
T ss_pred --------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcccee
Confidence 11111 2467889999999863 44555544443 3455554 3443321 11 1111268
Q ss_pred EEecCCChHHHHHHHHHHhcCCC-CC-chHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1128 VKLETLSMKDAWELFCKEVGGII-QS-PDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1128 ~~l~~L~~~~a~~Lf~~~~~~~~-~~-~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++++.++...++.+.+.... .. +-..+....|++.|+|.+..+..+..
T Consensus 146 ~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 146 FELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred eEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 89999999999999988653211 11 11244567789999999976654443
No 78
>PF13173 AAA_14: AAA domain
Probab=98.05 E-value=9.9e-06 Score=83.68 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+++.|.|+-|+|||||+++++++.. .-...+|+..... .... .. ... ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~--------~~~~-~~----------~~~--~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP--------RDRR-LA----------DPD--LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH--------HHHH-Hh----------hhh--hHHHHHHhhc
Confidence 35899999999999999999998665 2234445432111 0000 00 000 1122333334
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhcc------CccceeeecCCCCHHHH
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTN------CEVDHIYQMKELVHADA 350 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 350 (1866)
.++.+|+||+|.....|......+-..++..+|++|+.+...+.. .+....+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 478899999999887787777666655567899999988766532 13345689999998773
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=1.9e-05 Score=97.56 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=99.3
Q ss_pred CCCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..++.|++..++++.+.+... -...+-+.|+|++|+|||++|++++++....| +....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~------ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG------ 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch------
Confidence 357899999999998876421 12245689999999999999999999776544 21111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 315 (1866)
..+.... .+... ..........-...+.+|+||+++.. ..+..++..+..+
T Consensus 190 --~~l~~~~----~g~~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKY----IGEGA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHh----hhHHH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 0111111 00000 00011111112346789999998742 1233333333222
Q ss_pred CCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCC
Q 000202 316 ASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGV 382 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 382 (1866)
..+.+||.||.....+. ....+..++++..+.++..++|..++.+..... .. ...+++.+.|.
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~ 327 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGA 327 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCC
Confidence 24677888887543321 112356789999999999999998775433221 12 34566666654
No 80
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.02 E-value=8.6e-06 Score=90.62 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=35.6
Q ss_pred CceeehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 187 DLIGVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.||||+.+++++...|. ..+...+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 233457889999999999999999999987776
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00027 Score=85.48 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=114.9
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----ccceEEEEeeccccccccHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 256 (1866)
.|.....++|-+...+.+...+..+. -...+.|+|..|+||||+|..+++.+-.. +..... . ......
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~----~---~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL----A---DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc----C---CCCCCC
Confidence 45566789999999999999998653 45578999999999999999999966442 111100 0 000001
Q ss_pred HHHHHHHHH-------Hhcccccc--C-ccchhHH---HHHHHh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCC
Q 000202 257 DLRKELLSK-------LLNDRNVK--N-FQNISVN---FQSKRL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFA 316 (1866)
Q Consensus 257 ~l~~~ll~~-------~~~~~~~~--~-~~~~~~~---~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~ 316 (1866)
...+.+... +....+.. . ......+ .+.+.+ .+++-++|+|+++ +....+.++..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111222111 00000000 0 0111112 222232 3466789999998 4556677776666545
Q ss_pred CCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 317 SGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 317 ~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
....+|++|... .+.... .....+++.+++.++..+++....... . -..+.+..+++.++|.|....
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al 238 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKAL 238 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHH
Confidence 566655555444 332221 224689999999999999998743211 1 123456789999999998544
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=98.01 E-value=3.3e-05 Score=98.81 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=105.0
Q ss_pred cccCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
|....+++|.+..++.+..|+..- +...+.+.|+|.+|+||||+|.++++.+. |+. +.+. ... .. .....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-asd---~r-~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-ASD---QR-TADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-ccc---cc-cHHHH
Confidence 344567999999999999998742 22267899999999999999999999763 221 1111 111 11 11222
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH------HHHHHHhhccCCCCCCCEEEEEccccchh-c
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP------RQIELLIGRLDRFASGSQVIITTRDKQVL-T 332 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~ 332 (1866)
.++......... ....++-+||||+++.. ..+..+...+. ..+..||+|+.+..-. .
T Consensus 82 ~~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 82 ERVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222222211111 01136779999999753 23555554443 2345577776543211 1
Q ss_pred -cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 333 -NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 333 -~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.. .....+++++++.++....+...+...... -..+....|++.++|-.-
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLR 197 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 11 234678999999999888887665332211 124567788888877543
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=4.1e-06 Score=73.75 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=25.9
Q ss_pred CCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCC
Q 000202 1423 SLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTE 1480 (1866)
Q Consensus 1423 ~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 1480 (1866)
+|++|++++|+++.+| ..+..+++|++|++++|.+...-|..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444444 233444444444444444333333344444455555554443
No 84
>PTZ00202 tuzin; Provisional
Probab=97.99 E-value=2.8e-05 Score=91.90 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=113.3
Q ss_pred ccCCCcccccCccc--hhhhhhHHHHhhcccc------cccccCCCceeehhhHHHHHHhhhcCC-CCcEEEEEEecCCC
Q 000202 150 DLSGFDSCVIRPES--RLVADIANEVLERLDD------TFQSESKDLIGVEWRIKEIESLLRTGS-AGVYKLGIWGIGGI 220 (1866)
Q Consensus 150 ~~~g~~~~~~~~e~--~~i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~~i~I~G~gGi 220 (1866)
..-||.+++...+. -.++-.++...+.+++ ..|....+|+||+.++.+|...|...+ ...+++.|.|++|+
T Consensus 218 ~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 218 SVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 34556666554322 1233445555555444 246677899999999999999997433 23568999999999
Q ss_pred chhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH-----Hhh-cCcEEE
Q 000202 221 GKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK-----RLA-RKKVLI 294 (1866)
Q Consensus 221 GKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~-----~L~-~k~~Ll 294 (1866)
|||||++.+..... ..+++.+.+ ...+++..++.+++.... .........+.+ ... +++.+|
T Consensus 298 GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVL 365 (550)
T PTZ00202 298 GKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLL 365 (550)
T ss_pred CHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999997653 235555443 346788888888775322 111111122222 223 677777
Q ss_pred EEecC--CCHH-HHHHHhhccCCCCCCCEEEEEccccchhcc---CccceeeecCCCCHHHHHHHHHh
Q 000202 295 VFDDV--NHPR-QIELLIGRLDRFASGSQVIITTRDKQVLTN---CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 295 VlDdv--~~~~-~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
|+-== .+.. ...+.. .+.....-|+|++----+.+-.. ...-..|-+++++.++|.+.-..
T Consensus 366 II~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 366 VLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred EEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 77422 2211 111111 11122345788875443332111 12236789999999999876553
No 85
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=4e-05 Score=94.19 Aligned_cols=190 Identities=15% Similarity=0.144 Sum_probs=109.4
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+..... ..|..+. .-..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHHH
Confidence 445679999999999999988543 2346789999999999999999986543211 0111110 000111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc-cchh
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD-KQVL 331 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~~v~ 331 (1866)
......+..-.............+.+. ..++.-++|+|+++ +.+.+++++..+........+|++|.+ ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000000000000000111111 24566799999998 466788888777654556665555544 3333
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
... .....|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChH
Confidence 222 2246799999999998888877653222 1223456788999999876
No 86
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.99 E-value=6.1e-06 Score=103.97 Aligned_cols=173 Identities=31% Similarity=0.380 Sum_probs=132.2
Q ss_pred EEEccCCCC-CCCCCCCCCCcccEEEccCCcCCcccChhHHhcCC-CCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1379 MIFFMDNDL-QTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMT-SLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1379 ~l~l~~~~l-~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
.+.+..+.+ .........+.+..|.+.+| .+..+|+.. ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 466666666 34444556678999999877 677888765 5564 8999999999999999999999999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeeccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDV 1536 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~ 1536 (1866)
+..+|...+.+.+|+.|++++|.+..+|..++.+..|+.|.+.+.. ... ....+..+.++..|.+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~------~~~------~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS------IIE------LLSSLSNLKNLSGLELSN 241 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc------cee------cchhhhhcccccccccCC
Confidence 6678888878999999999999999999988888889999886432 111 112355677777776553
Q ss_pred CCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1537 HPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1537 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+. ....+..+..+..|+.|+++.|.+..++
T Consensus 242 n~--------~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 242 NK--------LEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ce--------eeeccchhccccccceeccccccccccc
Confidence 22 2223566788888999999999887765
No 87
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.99 E-value=4.1e-05 Score=86.63 Aligned_cols=149 Identities=18% Similarity=0.343 Sum_probs=94.6
Q ss_pred cccCCCceeehhhHHH---HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKE---IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~---l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+.||.+..+.+ |.+++.. +....+.+||.+|+||||||+.++..-+.. ...|+..+......+..+++
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHH
Confidence 4445677777766644 4444443 346678899999999999999999854332 13455544432222222333
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEE--Eccccchhcc-
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVII--TTRDKQVLTN- 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~- 333 (1866)
.++.- -...+.++|.+|.+|.|. +..|-+.|++. ...|+-++| ||.++..--.
T Consensus 210 fe~aq-------------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 210 FEQAQ-------------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHH-------------------HHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhH
Confidence 22211 112367889999999996 45566666544 466887776 7777754211
Q ss_pred --CccceeeecCCCCHHHHHHHHHh
Q 000202 334 --CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 334 --~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
.....++-+++|+.++-..++.+
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHH
Confidence 12346888999999999888876
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=5.9e-05 Score=96.82 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=110.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-..... . . ..........++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-~----~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-A----TPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-C----CCCCCCHHHHHH
Confidence 445689999999999999988543 34557899999999999999999865432100 0 0 000000011111
Q ss_pred HHH----HhccccccCccchh-HHHHHH-----HhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-
Q 000202 263 LSK----LLNDRNVKNFQNIS-VNFQSK-----RLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ- 329 (1866)
Q Consensus 263 l~~----~~~~~~~~~~~~~~-~~~l~~-----~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~- 329 (1866)
... +..-.. ......+ ...+.+ -..+++-++|||+++ +....+.|+..+.......++|++|.+.+
T Consensus 83 ~~g~~~D~ieida-as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 83 EQGRFVDLIEIDA-ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HcCCCCCceeecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 000 000000 0000000 011111 124567799999997 46677888877776666777776666553
Q ss_pred hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 330 VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.... .....|.+++|+.++..+.+...+-... .....+....|++.++|.+-
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMR 215 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 33221 2257899999999999988876542111 11224556778888988764
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=7.8e-05 Score=94.36 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=106.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 241 (1866)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 345679999999999999887542 34567899999999999999999865421 11111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs 319 (1866)
.+..... ... +-.++++..+. ..-..+++-++|+|+++ +....+.|+..+......+
T Consensus 92 eidaas~----~gv-d~ir~ii~~~~----------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 92 EIDAASR----TGV-EETKEILDNIQ----------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred Eeecccc----cCH-HHHHHHHHHHH----------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 1110000 000 00111111100 00123566799999998 4566778887777666677
Q ss_pred EEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 320 QVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 320 ~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+|++|.+. .+.... ....++++++++.++..+.+.+.+-... .....+....|++.++|-+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 766555443 333221 2357899999999998877776442211 1223445667788887744
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.97 E-value=6.4e-05 Score=95.22 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=140.4
Q ss_pred ccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 181 FQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 181 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
+|....+.|-|..-+..+.. ..+.|.+.|.-++|.|||||+.++.. ....=..+.|+....+.+.. ..+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp---~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDP---ARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCH---HHHHH
Confidence 34446678888776665543 23689999999999999999999988 33444668888755543333 44444
Q ss_pred HHHHHHhccccccCc--c-------chhH-HHHHHH---h--hcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNVKNF--Q-------NISV-NFQSKR---L--ARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~--~-------~~~~-~~l~~~---L--~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.++..+....+.... . .... ..+... + -.++..+||||-. ++.--..+.-.+.+..++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 555444422210000 0 0001 112222 2 2468899999975 3322222222233445688999
Q ss_pred EEccccchhccC---ccceeeecC----CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccC
Q 000202 323 ITTRDKQVLTNC---EVDHIYQMK----ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCG 395 (1866)
Q Consensus 323 iTTR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~ 395 (1866)
||||...-+.-. -.+..++++ .++.+|+-++|..... . +-....++.+.+..+|-+-||..++=.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~--l---~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS--L---PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC--C---CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 999988433221 113445554 4899999999986651 1 112345788999999999998887776663
Q ss_pred -CCHHHHHHHHHHhccCCCchhhhhh-hcccCCCChhhHHHHHHHH
Q 000202 396 -RSKEEWESAMRKLEIVPHMEIQEVL-KISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 396 -~~~~~w~~~l~~l~~~~~~~i~~~l-~~Sy~~L~~~~k~~~~~l~ 439 (1866)
.+.+.-. ..+... ...|.+-| .-=+|.||++.|....-++
T Consensus 240 ~~~~~q~~---~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~s 281 (894)
T COG2909 240 NTSAEQSL---RGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTS 281 (894)
T ss_pred CCcHHHHh---hhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2333211 111110 11121111 2225789999998877776
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=3.8e-05 Score=97.79 Aligned_cols=189 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+...-... ... .+. ......+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p-Cg~-------C~sCr~i 82 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP-CGV-------CQSCTQI 82 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC-Ccc-------cHHHHHH
Confidence 345689999999999999998543 345789999999999999999998643211000 000 000 0000000
Q ss_pred HHH-HhccccccCccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-h
Q 000202 263 LSK-LLNDRNVKNFQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-V 330 (1866)
Q Consensus 263 l~~-~~~~~~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v 330 (1866)
... ...-...........+.+++. ..+++-++|||+++. ....+.++..+......+++|++|.+.+ +
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 000000000000011111111 124567899999984 3446666666655455677777776543 2
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.... +....+++++++.++....+.+.+-.... .-..+....|++.++|.+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSM 214 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCH
Confidence 2111 22356788899999998888766532221 123456778888888765
No 92
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.97 E-value=9.4e-05 Score=90.30 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=105.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|++..++.+..++..+. ...+.|+|.+|+||||+|+.+++..........++..... .... .....+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~--~~~~-~~~~~~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS--DERG-IDVIRNK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc--cccc-hHHHHHH
Confidence 344679999999999999987543 3357999999999999999999876433211122221100 1111 1111111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~ 338 (1866)
+.......+ .....+-++|+|+++. .+..+.+...+....+.+++|+++.... +.... ....
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111111110 0012356899999874 3344555555555556677887775332 21111 1234
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.+++++++.++....+...+-.... .-.++....+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 6899999999998888776633221 11245677788888887543
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=5.3e-06 Score=73.00 Aligned_cols=60 Identities=37% Similarity=0.607 Sum_probs=53.0
Q ss_pred CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccC
Q 000202 1397 PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1397 ~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 1457 (1866)
++|++|++++| .+..+|+..|..+++|++|++++|.+..+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47889999987 788999888899999999999999999887 5789999999999999863
No 94
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00013 Score=88.24 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=109.5
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-----cccceEEEEeeccccccccHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-----HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
.+++|-+..++.+...+..+. -.+...++|+.|+||||+|+++++.+.. .++....+..... ..-.... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CCCCHHH-HH
Confidence 467898888899999987543 3567789999999999999999996532 1222222211000 0011111 22
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~ 336 (1866)
++...+.... ..+++-++|+|+++ +...++.++..+....+++.+|++|.+.+.+ ... ..
T Consensus 80 ~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 80 NIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 2222221110 12344455666664 6778889998888878899999888766433 111 22
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
..++++.+++.++....+.+... + . ..+.+..++.+++|.|.-+
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~-~--~---~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYN-D--I---KEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhc-C--C---CHHHHHHHHHHcCCCHHHH
Confidence 46899999999999887765431 1 1 1334678899999988643
No 95
>PRK08727 hypothetical protein; Validated
Probab=97.94 E-value=6.1e-05 Score=86.49 Aligned_cols=164 Identities=17% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCCceeehhh-HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 185 SKDLIGVEWR-IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 185 ~~~~vGr~~~-l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
.++||+.... +..+..+.. + .....+.|+|.+|+|||+||.++++....+...+.|+.... ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~----------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA----------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH----------hhhhHH
Confidence 4566655543 333333332 2 23356999999999999999999997666544556654111 111110
Q ss_pred HHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEccccc---------
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTRDKQ--------- 329 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~~--------- 329 (1866)
..+ +.+ .+.-+|||||++.. ..+ +.+...+.. ...|..||+||+...
T Consensus 86 -----------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 -----------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred -----------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 001 112 12348999999732 112 222222211 134677999998542
Q ss_pred hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 330 VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 330 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
+........++++++++.++-.+++.+++.... ..-.++...-|++.++|
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGER 196 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCC
Confidence 112222245789999999999999998664221 11223445566666554
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.93 E-value=5.4e-05 Score=99.39 Aligned_cols=145 Identities=21% Similarity=0.376 Sum_probs=86.0
Q ss_pred ccCCCceeehhhHH---HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIK---EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
...++|||.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++.....|. .+..+ ......+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-
Confidence 44567999998885 466666543 3456789999999999999999987655542 11100 0000111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHH--hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE--ccccc--hh
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKR--LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT--TRDKQ--VL 331 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT--TR~~~--v~ 331 (1866)
++.+. ...+. ..+++.+||||||+ +..+.+.++..+. .|+.++|+ |++.. +.
T Consensus 94 r~~i~-----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 RAEVD-----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred HHHHH-----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 11111 01111 12467799999997 4556667765543 35555553 44331 11
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
... ....++.+++|+.++...++.+.+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHH
Confidence 111 123578999999999988887654
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=6.2e-05 Score=80.07 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=69.6
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN 268 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 268 (1866)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++.....-...+++. ........ .........
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL-VVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh-HHHHHhhhh-----
Confidence 47888889998888643 3457899999999999999999997653323333433 22110000 000000000
Q ss_pred cccccCccchhHHHHHHHhhcCcEEEEEecCCCH--HH---HHHHhhccCCC---CCCCEEEEEccccc
Q 000202 269 DRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--RQ---IELLIGRLDRF---ASGSQVIITTRDKQ 329 (1866)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gs~IiiTTR~~~ 329 (1866)
............++.+||+||++.. .. +.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 22 23333332221 36788888888653
No 98
>PLN03150 hypothetical protein; Provisional
Probab=97.93 E-value=1.7e-05 Score=104.51 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=89.8
Q ss_pred CcEEEccCCCCC-CCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEecc
Q 000202 1377 AKMIFFMDNDLQ-TLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1377 l~~l~l~~~~l~-~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~ 1453 (1866)
++.|++.+|.+. .+| .+..+++|+.|+|++|...+.+|..+ +.+++|++|+|++|.+. .+|..+++|.+|++|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 567888888887 455 46789999999999996666788776 88999999999999998 889999999999999999
Q ss_pred cccCcccCCccccCC-CCCcEEEccCCC
Q 000202 1454 DCDFLFVLPPEVGSL-ECLEVLDLRGTE 1480 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L-~~L~~L~l~~~~ 1480 (1866)
+|.+.+.+|..++.+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 999999999998864 578889999885
No 99
>PF13173 AAA_14: AAA domain
Probab=97.92 E-value=2.1e-05 Score=81.30 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+++.|.|+.|+|||||+++++.+.. .-..+++++..+.........+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccC
Confidence 35789999999999999999965333 2345667765543221110000 123333334447
Q ss_pred cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccC------CCCcEEEecCCChHHH
Q 000202 1079 KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNM------DVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1079 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~------~~~~~~~l~~L~~~~a 1138 (1866)
+.+|+||+|....+|......+.......+||+|+.+......- +....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999999888887766665555568999999877665321 1124678999987763
No 100
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.92 E-value=0.00025 Score=90.41 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=93.7
Q ss_pred cCCCceeehhhHHHHHHhhhc---CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----ccc--eEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----FEG--SYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f~~--~~~~~~~~~~~~~~ 253 (1866)
.++.++||+.++++|...|.. ++....++.|+|.+|+|||+.++.|.+++... .+. .+++. ... ..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---VV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc---cC
Confidence 457899999999999998874 23334567899999999999999999865432 221 22332 111 12
Q ss_pred cHHHHHHHHHHHHhccccccCccchh-HHHHHHHh-h--cCcEEEEEecCCCHH--HHHHHhhccCC-CCCCCEEEE--E
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNIS-VNFQSKRL-A--RKKVLIVFDDVNHPR--QIELLIGRLDR-FASGSQVII--T 324 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~L-~--~k~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~Iii--T 324 (1866)
....+...+..++....+........ ...+...+ . ....+||||+|+... .-+.|...+.+ ...+++|+| +
T Consensus 829 tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 23445555555554333211111111 12222222 1 224589999997421 11112211111 124566554 3
Q ss_pred ccccc--------hhccCccceeeecCCCCHHHHHHHHHhhcC
Q 000202 325 TRDKQ--------VLTNCEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 325 TR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|.+-. +...++ ...+..++.+.++-.+++..++-
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 43221 112222 22356799999999999988774
No 101
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.92 E-value=0.00023 Score=79.25 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=95.6
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceEEEEeeccccccccH
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 255 (1866)
.+.+.+..+. -...+.++|..|+||||+|+.+.+.+... ++...++..... ..-
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~~~ 77 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----SIK 77 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----cCC
Confidence 3445554331 24678899999999999999999876432 111112110000 000
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhc
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLT 332 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~ 332 (1866)
.+..+++...+... -..+.+-++|+||++. .+..+.++..+....+.+.+|++|++. .+..
T Consensus 78 ~~~i~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQVRELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 11111111111000 0134566899999974 455677777776666677788777654 2222
Q ss_pred cC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 333 NC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 333 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.. ....++++.+++.++..+.+.+.. . ..+.+..+++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQG-----I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHcC-----C---CHHHHHHHHHHcCCCccc
Confidence 11 224689999999999988887761 1 145688999999998863
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00015 Score=88.92 Aligned_cols=174 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CCceeehhhHHHHHHhhhcCCC--------CcEEEEEEecCCCchhHHHHHHHHhhhccc--------------------
Q 000202 186 KDLIGVEWRIKEIESLLRTGSA--------GVYKLGIWGIGGIGKTTIAGAVFNKISRHF-------------------- 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~--------~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 237 (1866)
.+++|-+..++.|...+..+.. -.+.+.++|++|+|||++|+.+++.+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688988888989988875431 246688999999999999999998553321
Q ss_pred cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCC
Q 000202 238 EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRF 315 (1866)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~ 315 (1866)
+...++...+ ..-.... .+++...+.. .-..+++-++|+|+++. ....+.++..+...
T Consensus 85 pD~~~i~~~~---~~i~i~~-iR~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPEG---LSIGVDE-VRELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEecccc---ccCCHHH-HHHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 1111111000 0000000 1111111100 00123455788899984 45556677766665
Q ss_pred CCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 316 ASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
.++..+|++|.+.. +.... .....+.+++++.++..+.+..... .. .+.+..++..++|.|...
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHH
Confidence 66777777776643 33221 2246899999999999988874331 11 345778899999998643
No 103
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00011 Score=92.26 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=101.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc-----------------ce
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE-----------------GS 240 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 240 (1866)
|....++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3445679999988888888877542 23567899999999999999999865321 10 01
Q ss_pred EEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCC
Q 000202 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 318 (1866)
..+... ....... .+++..... ..-..+++-++|+|+++. .++.+.++..+....+.
T Consensus 89 ~el~aa----~~~gid~-iR~i~~~~~----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDAA----SNRGIDE-IRKIRDAVG----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeCc----ccCCHHH-HHHHHHHHh----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 111100 0000011 111111100 001234567999999974 44566777666554445
Q ss_pred CEEEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 319 SQVIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 319 s~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..+|++|.+ ..+.... ....++++.+++.++....+.+.+..... .-..+....|++.++|-
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGG 211 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCC
Confidence 555545443 2332221 22468899999999988888776632221 12245567778777543
No 104
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.89 E-value=2.3e-05 Score=89.73 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHH------HHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDA------QVAEK 1070 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 1070 (1866)
...++|+|.+|+|||||++.+|+..... +|+.++|+.++.. +++.++++.+...+-....+..... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999998866555 8999999997766 8999999998433322221211111 12222
Q ss_pred HHHH-hCCCcEEEEEeCCCC
Q 000202 1071 LWQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~-L~~kr~LlVlDdv~~ 1089 (1866)
.... -.|++.++++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 2222 358999999999965
No 105
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.88 E-value=5.5e-05 Score=87.15 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
..++.+.+++.......|.|+|..|+|||+||+.+++... ......++++++.-. ...
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~-------------- 81 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD-------------- 81 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH--------------
Confidence 3555555555455566899999999999999999965422 122344556544321 110
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc---chh-hhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEe
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQI---DLE-AVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKL 1130 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l 1130 (1866)
..+...+.+. -+|||||++... .|. .+...+.. ...+.++|+||+... +...+.....+++
T Consensus 82 ----~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l 156 (226)
T TIGR03420 82 ----PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156 (226)
T ss_pred ----HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEec
Confidence 0111122232 389999998632 232 23322211 123457888887432 2222322467899
Q ss_pred cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1131 ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
.+++.++...++.+.+..... +--.+..+.+++.+.|.|..+.-+..
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999988888765432111 11123456677778888876655543
No 106
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=7.5e-05 Score=77.72 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=68.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-----ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-----FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQ 283 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l 283 (1866)
.+.+.|+|.+|+|||+++.++++..... -...+|+.... ......+...++..+..............+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4678999999999999999999976543 23344544222 23557788888888776655211111112455
Q ss_pred HHHhhcCc-EEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccc
Q 000202 284 SKRLARKK-VLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 284 ~~~L~~k~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+.+...+ .+||+|+++.. +.++.+..... ..+.+||++.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555544 59999999754 34455544333 567788887765
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00015 Score=90.41 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=109.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 241 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..+ ..++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445689999999999988887543 245788999999999999999988542211 1112
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs 319 (1866)
.+..... ....+ .+++....... -..+++-++|+|+++ +.+..+.++..+....+.+
T Consensus 89 eidaas~----~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 89 EIDAASN----TSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred EEecccC----CCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2211100 00011 11111111000 013455689999997 4556778887777666777
Q ss_pred EEEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+ +.+.... .....+++++++.++..+.+.+.+..... .-..+....|++.++|.+-
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 77766643 3333222 23467899999999998888876643221 1224556778888887653
No 108
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00016 Score=92.75 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc----cceEEEEeeccccccccHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF----EGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~l 258 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-..= .+... ........
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 345679999998899999988643 356778999999999999999988553210 00000 00000000
Q ss_pred HHHHHHHHhccccccCc---cchhHHHHHHHh--------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEc
Q 000202 259 RKELLSKLLNDRNVKNF---QNISVNFQSKRL--------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITT 325 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~---~~~~~~~l~~~L--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTT 325 (1866)
...+.. +...+.... .+...+.+++.+ .++.-++|||+|+ +.+..+.++..+.......++|++|
T Consensus 84 C~~i~~--g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 84 CRDIDS--GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHc--CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 011100 000000000 001111222221 2345588999998 4667778887776655667777666
Q ss_pred cc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 326 RD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 326 R~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+ ..+.... .....+++++++.++..+.+.+.+-.... .-..+....|++.++|-+
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSM 219 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 44 3333221 22478999999999998888766532221 112345677788887754
No 109
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00017 Score=90.76 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=108.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc-------ceEEEEeecccccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE-------GSYFACNVRAAEETGR 254 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~ 254 (1866)
|....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~--------- 86 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT--------- 86 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh---------
Confidence 3445679999999999988776542 2456889999999999999999986532110 0111110
Q ss_pred HHHHHHHHHHHHhccccccCc---cchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEE
Q 000202 255 LDDLRKELLSKLLNDRNVKNF---QNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~---~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 321 (1866)
....+... ...+.... .....+.+++. ..+++-++|+|+++. ...++.++..+....+.+.+
T Consensus 87 ---~C~~i~~~--~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 87 ---NCISFNNH--NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred ---HHHHHhcC--CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 00000000 00000000 00001111111 235677899999985 56678888777665566666
Q ss_pred EE-EccccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 322 II-TTRDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 322 ii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
|+ ||+.+.+.... .....+++.+++.++..+.+...+-.... .-..+....|++.++|.+
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSA 223 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 65 55544443322 22467899999999999999877643221 112445677888888865
No 110
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.82 E-value=8.1e-05 Score=100.36 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=143.5
Q ss_pred CceeehhhHHHHHHhhhcCCC-CcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTGSA-GVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~-~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
.++||+.+++.|...+..-.. ...++.+.|..|||||+|+++|...+..++. ...|-.-.+.. .-..+....+.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~i-pl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNI-PLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCC-chHHHHHHHHHH
Confidence 378999999999988875432 3668999999999999999999997766521 11111000000 000011122222
Q ss_pred HHHH-------------------hccc------------------cccCccchhH---------HHHHHHh-hcCcEEEE
Q 000202 263 LSKL-------------------LNDR------------------NVKNFQNISV---------NFQSKRL-ARKKVLIV 295 (1866)
Q Consensus 263 l~~~-------------------~~~~------------------~~~~~~~~~~---------~~l~~~L-~~k~~LlV 295 (1866)
..++ +... ...+...... ..+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 2221 1100 0000000000 1122222 45699999
Q ss_pred EecCC--CHHHHHHHhhccCCCCC----CCEEE--EEcccc--chhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCC
Q 000202 296 FDDVN--HPRQIELLIGRLDRFAS----GSQVI--ITTRDK--QVLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLD 365 (1866)
Q Consensus 296 lDdv~--~~~~~~~l~~~~~~~~~----gs~Ii--iTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 365 (1866)
+||+. |...++.+......... -..|. .|.+.. .+.........+.+.||+..+.-.|.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99994 44444433222221110 11222 233322 1112223357899999999999999876663222
Q ss_pred hhHHHHHHHHHHHhCCCcceeeeecccccCC-------CHHHHHHHHHHhccCCC-chhhhhhhcccCCCChhhHHHHHH
Q 000202 366 AGYTELAHKALKYAQGVPLALKVLGCYLCGR-------SKEEWESAMRKLEIVPH-MEIQEVLKISYDSLDDSQKRMHDL 437 (1866)
Q Consensus 366 ~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~~~~~ 437 (1866)
....+..+.|+++..|+|+-+..+-..+... +...|..-...+..... ..+.+.+..-.+.||...++.+.+
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234668899999999999999887777543 23445544444433221 224445778889999999999999
Q ss_pred HHHHh
Q 000202 438 LRAMG 442 (1866)
Q Consensus 438 l~~~~ 442 (1866)
.+..|
T Consensus 317 AA~iG 321 (849)
T COG3899 317 AACIG 321 (849)
T ss_pred HHHhC
Confidence 99655
No 111
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=5.3e-06 Score=96.46 Aligned_cols=191 Identities=20% Similarity=0.195 Sum_probs=123.3
Q ss_pred cccccCcEEEccCCCCCCCC---CCCCCCcccEEEccCCcCCcccC-hhHHhcCCCCcEEEccCCCCCCCChh--hcCCC
Q 000202 1372 EEWTHAKMIFFMDNDLQTLP---GRPSCPNLLTLFLQRNCRLRVIP-PSFFELMTSLKVLNLSKTRIKSLPET--LVNLK 1445 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~---~~~~~~~L~~L~L~~~~~l~~~p-~~~~~~l~~L~~L~Ls~~~i~~lp~~--i~~L~ 1445 (1866)
.++++|+.+.+.+..+...+ ....|++++.|+|++|-.-.+.| ..+...+++|+.|+|+.|++...-.+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35678888888888777665 24579999999999984433333 35667899999999999987633222 23678
Q ss_pred CCcEEecccccCccc-CCccccCCCCCcEEEccCCC-CCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1446 CLQILILRDCDFLFV-LPPEVGSLECLEVLDLRGTE-IKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+|+.|.|+.|.+... +-..+..+++|+.|+|.+|. +..--....-+..|+.|+++... ...++. .-.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~------li~~~~----~~~~ 267 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN------LIDFDQ----GYKV 267 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc------cccccc----cccc
Confidence 999999999987632 22234567899999999994 32111223446788888886432 222221 1125
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
+.|+.|+.|+++.++... ...-..........+++|+.|++..|++...
T Consensus 268 ~~l~~L~~Lnls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccchhhhhccccCcch-hcCCCccchhhhcccccceeeecccCccccc
Confidence 678888888887554321 0000001122235678999999998887543
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.80 E-value=6.3e-05 Score=86.54 Aligned_cols=173 Identities=16% Similarity=0.161 Sum_probs=92.9
Q ss_pred ccCCCce-eehhhH-HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLI-GVEWRI-KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~v-Gr~~~l-~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...++|+ |..... ..+.++.. +....+.+.|+|.+|+|||+||.++++.....-....++... . ...
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~---------~~~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S---------PLL 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H---------hHH
Confidence 3345666 444433 44555444 223456789999999999999999998653322233343311 1 000
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH--HHHHHHhhccCCC-CCCC-EEEEEccccchhc----
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--RQIELLIGRLDRF-ASGS-QVIITTRDKQVLT---- 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTTR~~~v~~---- 332 (1866)
.+ .. ....-+||+||++.. ...+.+...+... ..|. .||+|++......
T Consensus 84 ~~----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 84 AF----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred HH----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 00 00 112347889999632 2323333332211 2344 4667766433221
Q ss_pred ----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecc
Q 000202 333 ----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGC 391 (1866)
Q Consensus 333 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~ 391 (1866)
.+.....++++++++++-..++.+.+-... ..-.++....+++.+.|++..+..+-.
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 111236789999999887777765432111 112245677777788888876554443
No 113
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00016 Score=91.78 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=105.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 241 (1866)
....++||-+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-.. |....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 345679999999999999997543 24567899999999999999999855321 11111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
.+.... .....+ .++++..+... -..++.-++|+|+|+. .+..+.++..+....+.+
T Consensus 92 eidaas----~~~v~~-iR~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 92 EVDAAS----RTKVED-TRELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEcccc----cCCHHH-HHHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 111000 000111 11111111100 0134556889999984 567777877777666678
Q ss_pred EEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 320 QVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 320 ~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
++|++|.+. .+.... .....+++++++.++....+...+-.... .-..+....|++.++|-+-
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR 215 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVR 215 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 777766544 222211 22456889999999877766554422211 1123446677888887663
No 114
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.79 E-value=1.5e-06 Score=100.44 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=99.3
Q ss_pred cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhh
Q 000202 1660 YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMI 1739 (1866)
Q Consensus 1660 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l 1739 (1866)
.++-+..+++..|+.+++..... ....+..|+.|..++|....+.....+. ...++|+.|.+..|.++++.--...-
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d~~l~aLg-~~~~~L~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITDEVLWALG-QHCHNLQVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred cChHhhccchhhhccccchHHHH--HhhhhhHhhhhcccCCCCCchHHHHHHh-cCCCceEEEeccccchhhhhhhhhhh
Confidence 34556667777887776653211 2345678999999998876653222222 24699999999999998776433344
Q ss_pred hhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc-------ccCCCCCccEEEEEcCccccc
Q 000202 1740 QFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-------WRNDWPSLEYISFYGCPKLKK 1811 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-------~~~~lpsLe~L~I~~Cp~L~~ 1811 (1866)
.+.+.|+.+++..|.....- .. .+...++|+|+.|.|+.|...+.- .......|+.|.+.+||.++.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~----tL-~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDG----TL-ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred cCChhhhhhcccccceehhh----hH-hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 67899999999999655332 11 122347899999999999876544 112567899999999999873
No 115
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.79 E-value=4.4e-05 Score=90.43 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=62.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC--CHHHHHHHHHHHhccCCCCccCHH------HHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW--NTRKIQKQVLRQLSLHCKDRETDA------QVAEKL 1071 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l 1071 (1866)
+..+|+|.+|+||||||+++|+..... +|+.++||.+++.. ++.++++.|...+-....+..... ...+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 458999999999999999998765555 89999999998887 888888888743322222222111 111222
Q ss_pred HHH-hCCCcEEEEEeCCCC
Q 000202 1072 WQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1072 ~~~-L~~kr~LlVlDdv~~ 1089 (1866)
... -.|++++|++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 222 368999999999964
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.78 E-value=0.00015 Score=82.22 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=100.2
Q ss_pred HHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHH
Q 000202 990 IFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAE 1069 (1866)
Q Consensus 990 i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 1069 (1866)
+.+.++..+.+.+.+||++|+||||||+.+.+...-.. ..||..|-...-..-.+.|.++...
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~------------- 215 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN------------- 215 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------
Confidence 34455677888899999999999999999965443332 4566666543333334444433211
Q ss_pred HHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE--ccCChhh---hccCCCCcEEEecCCChHHHHHHH
Q 000202 1070 KLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM--ASRELDV---CRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1070 ~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
...+.++|..|.+|.|.. ..+-+.+ +|...+|+-++| ||.+.+. +.-..-..++-++.|..++...++
T Consensus 216 --~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 216 --EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred --HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 134578899999999974 3444433 455667887776 6666543 111222378999999999999999
Q ss_pred HHHhc---CCC----CCch----HH-HHHHHHHHHcCCChH
Q 000202 1143 CKEVG---GII----QSPD----IH-LYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1143 ~~~~~---~~~----~~~~----~~-~~~~~I~~~c~GlPL 1171 (1866)
.+... ... .-|+ ++ .+..-++..|.|..-
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 87542 111 1122 22 255556777887653
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00015 Score=90.31 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=106.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... ++...|...... ....-...+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~---~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE---PCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC---CCCCCHHHH
Confidence 345689999999999999887543 24557899999999999999999866431 110001100000 000000000
Q ss_pred HHHHHHhcc---ccccCccchh-HHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-ccc
Q 000202 261 ELLSKLLND---RNVKNFQNIS-VNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT-RDK 328 (1866)
Q Consensus 261 ~ll~~~~~~---~~~~~~~~~~-~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~ 328 (1866)
.+....... -+.......+ ...+.+.+ .+++-++|+|+++. .+.++.++..+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000000000 0000000000 01111222 34556889999974 456777777776666677776655 333
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... ....++++++++.++..+.+...+-... ..-..+.+..+++.++|.+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSM 222 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 333221 1235789999999998887776552111 1122456788888888865
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0002 Score=91.80 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=105.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 241 (1866)
....++||-+..++.+..++..+. -.+.+.++|..|+||||+|+.+++.+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 344679999999999999988543 245678999999999999999998653221 0111
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++... .... .+-.++++..... .-..+++-++|+|+++. .+..+.++..+......+
T Consensus 92 ei~~~----~~~~-vd~ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVDAA----SNTQ-VDAMRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred Eeecc----ccCC-HHHHHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 11000 0000 0111111111100 00134567899999984 455777777776655677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+|++|.+.+ +.... .....+++++++.++..+.+.+.+-.... ....+....|++.++|.+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSM 214 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 7776665443 32211 12467899999999988877765422211 122445677888888866
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=7.7e-05 Score=94.27 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=104.3
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. ...+.. ....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~~Cg~----C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GDCCNS----CSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CCCCcc----cHHHHH
Confidence 3445689999999999999887543 346788999999999999999998653211 100 000000 000011
Q ss_pred HHHHHhccccccCcc---chhHHHHH---HH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 262 LLSKLLNDRNVKNFQ---NISVNFQS---KR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~---~~~~~~l~---~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
+.... ..+..... ....+.++ +. ...++-++|+|+++. ......|+..+....+...+|++|...
T Consensus 82 i~~~~--h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 82 INTNQ--SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHcCC--CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 10000 00000000 00011111 11 122344699999974 556677777666545566666655433
Q ss_pred -chhcc-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 -QVLTN-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+... ......+++.+++.++....+...+-.... .-..+.+..+++.++|-+
T Consensus 160 ~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~Gdl 214 (605)
T PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSL 214 (605)
T ss_pred HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcH
Confidence 33222 122467899999999998888765532211 112345677888888754
No 120
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.75 E-value=0.00029 Score=87.46 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=107.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc-----------------ceE
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE-----------------GSY 241 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 241 (1866)
.....+||.+..++.+.+.+..+. -.+.+.++|.+|+||||+|+.++..+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999987543 34567899999999999999999865421 11 011
Q ss_pred EEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 242 FACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
++.... ... ..-.+++...+... -..+++-++|+|+++. ....+.++..+....+.+
T Consensus 90 ~~~~~~----~~~-~~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EIDAAS----NNG-VDDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eeeccc----cCC-HHHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 111000 000 01111121111100 0223455889999874 355677777766555677
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.+|++|.+.. +.... .....+++++++.++..+.+...+-..... -.++.+..+++.++|.|..
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRD 214 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHH
Confidence 7777775543 22211 224578899999999888887765322211 1245677888888887753
No 121
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.74 E-value=5.3e-05 Score=78.86 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
.+.+.|+|.+|+|||++++.+.+..... ..-..++|+.++...+...+.+.|+.+++.......+..++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999996532110 0024566999988889999999999999987666566777778888888
Q ss_pred CCCc-EEEEEeCCCCc---cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1076 NGEK-FLLLLDDVWEQ---IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1076 ~~kr-~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
...+ .+||+|++..- ..++.+..... ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6655 59999999753 22334433222 456667766553
No 122
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.74 E-value=0.00024 Score=88.05 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=89.9
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..++.|++..++++.+.+.. +-...+-|.++|.+|+|||++|++++++....| +.....
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~~----- 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVGS----- 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeehH-----
Confidence 35789999999999887632 112355689999999999999999999765432 221111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HH---HHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQ---IELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~---~~~l~~~~~~~-- 315 (1866)
.+ .....+.. ...........-...+.+|+||+++.. +. +..++..+..+
T Consensus 200 ---~l----~~~~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ---EL----VQKFIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ---HH----hHhhccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 11111100 000011111122346789999999752 11 22233222221
Q ss_pred CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 316 ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
..+..||.||.....+... ..+..++++..+.++..++|..+..+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 2355677787654332211 12467899999999999999877643
No 123
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.73 E-value=0.00022 Score=81.96 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=89.8
Q ss_pred CCce-eehh-hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 186 KDLI-GVEW-RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 186 ~~~v-Gr~~-~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
++|+ |-.. .+..+.++.... ..+.+.|+|++|+|||+||.++++.....-..+.|+..... .....+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~-------~~~~~~-- 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR-------AWFVPE-- 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH-------hhhhHH--
Confidence 4455 6322 334444444322 34578999999999999999999976654334455542110 000000
Q ss_pred HHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHH-HhhccCC-CCCC-CEEEEEccccc--------
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIEL-LIGRLDR-FASG-SQVIITTRDKQ-------- 329 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~IiiTTR~~~-------- 329 (1866)
+.+.+.+ --+|+|||+... .+|+. +...+.. ...| .++|+||+...
T Consensus 91 -------------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -------------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -------------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 1111211 237899999642 23321 2111111 1123 47999998552
Q ss_pred -hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 330 -VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 330 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+...+....++++++++.++-.+.+.+++.... ..-.++...-|++.+.|.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCC
Confidence 222233346899999999999998887663211 112245566666666654
No 124
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.71 E-value=0.00037 Score=91.06 Aligned_cols=199 Identities=15% Similarity=0.127 Sum_probs=111.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccccccc---ceEEEEEecC---CCCHHHHHHHH--
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMF---HVIIWVTVSR---YWNTRKIQKQV-- 1050 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~~~~~i-- 1050 (1866)
.+.|+...+..+...+.......+.|+|.+|+||||||+.+++.......+ ...-|+.+.. ..+...+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg 234 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLG 234 (615)
T ss_pred hceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcC
Confidence 345666667777777765566679999999999999999997654332222 1223444321 12222221111
Q ss_pred -------------HHHhccCC----------------CCc-cCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcC
Q 000202 1051 -------------LRQLSLHC----------------KDR-ETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGI 1098 (1866)
Q Consensus 1051 -------------~~~l~~~~----------------~~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~ 1098 (1866)
+...+... .+. .-....+..+.+.+++++++++.|+.|.. ..|+.+..
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~ 314 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKK 314 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhh
Confidence 11111000 000 01134567888899999999998777653 45888877
Q ss_pred CCCCCCCCcEEEE--ccCChhhhc-cCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1099 PVPGSENGSKIFM--ASRELDVCR-NMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1099 ~l~~~~~gs~Iiv--TTR~~~v~~-~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
.+....+...|++ ||++..... ... -...+.+.+++.+|.+.++.+.+......- -.+..+.|.+.+..-+-|+.
T Consensus 315 ~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~~ys~~gRraln 393 (615)
T TIGR02903 315 LFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIARYTIEGRKAVN 393 (615)
T ss_pred hcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHCCCcHHHHHH
Confidence 6665555555665 566543211 111 124678899999999999988765321110 12333444444443344554
Q ss_pred HHHH
Q 000202 1175 VTAK 1178 (1866)
Q Consensus 1175 ~~g~ 1178 (1866)
.++.
T Consensus 394 ~L~~ 397 (615)
T TIGR02903 394 ILAD 397 (615)
T ss_pred HHHH
Confidence 4443
No 125
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00064 Score=82.17 Aligned_cols=173 Identities=12% Similarity=0.141 Sum_probs=105.5
Q ss_pred cchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcC----cccccccceEEEEEe-cCCCCHHHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISY----PEVKVMFHVIIWVTV-SRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~ 1053 (1866)
+.|.+.-++.+.+.+...+. ....++|+.|+||||+|+.++.. .....+.|...|... .....+.+ .+++.+.
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~ 84 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEE 84 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHH
Confidence 44566667778888866554 45689999999999999998652 112334555444432 22233333 2223332
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCC--CCccchhhhcCCCCCCCCCcEEEEccCChhhh-cc-CCCCcEEE
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDV--WEQIDLEAVGIPVPGSENGSKIFMASRELDVC-RN-MDVNMVVK 1129 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~~~ 1129 (1866)
+... -..+++=++|+|++ .+...++.+...+.....++.+|++|.+.+.. .. ..-...++
T Consensus 85 ~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~ 148 (313)
T PRK05564 85 VNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYK 148 (313)
T ss_pred HhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeee
Confidence 2211 11234445555555 45667888888777666788988888765432 11 11136889
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+.+++.++....+.+...+.. .+.+..++..++|.|.-+.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~~~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 149 LNRLSKEEIEKFISYKYNDIK-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-----HHHHHHHHHHcCCCHHHHH
Confidence 999999999887766543211 2336678899999886543
No 126
>PRK05642 DNA replication initiation factor; Validated
Probab=97.69 E-value=0.0004 Score=79.77 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=81.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|+|..|+|||.||.++++.+...-..++|+.. . ++... ...+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~---------~~~~~------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A---------ELLDR------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H---------HHHhh------------------hHHHHHhhh
Confidence 3578999999999999999999876554345566541 1 11110 011223333
Q ss_pred cCcEEEEEecCCC---HHHHH-HHhhccCC-CCCCCEEEEEccccchh---------ccCccceeeecCCCCHHHHHHHH
Q 000202 289 RKKVLIVFDDVNH---PRQIE-LLIGRLDR-FASGSQVIITTRDKQVL---------TNCEVDHIYQMKELVHADAHKLF 354 (1866)
Q Consensus 289 ~k~~LlVlDdv~~---~~~~~-~l~~~~~~-~~~gs~IiiTTR~~~v~---------~~~~~~~~~~l~~L~~~ea~~Lf 354 (1866)
+-. +||+||+.. ...|+ .+...+.. ...|.+||+||+...-. ..+....++++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 333 678899962 12332 23333221 23467899998754221 11122367889999999999998
Q ss_pred HhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 355 TQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..++..... .-.++...-+++.+.|-
T Consensus 176 ~~ka~~~~~--~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 176 QLRASRRGL--HLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCC
Confidence 865532211 11135555566655543
No 127
>PRK09087 hypothetical protein; Validated
Probab=97.69 E-value=0.00024 Score=80.82 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=81.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+.+.|||.+|+|||+|++.++.... ..|+... .+..++... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~---------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA---------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh---------------------hh
Confidence 45689999999999999999887532 2243310 011111110 11
Q ss_pred cCcEEEEEecCCC----HHHHHHHhhccCCCCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHHHHH
Q 000202 289 RKKVLIVFDDVNH----PRQIELLIGRLDRFASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHKLFT 355 (1866)
Q Consensus 289 ~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 355 (1866)
+ -+|++||++. .+.+-.+...+. ..|..||+|++.. .+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 2788899953 333333332222 3477899999742 233333445789999999999999998
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 356 QCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+++-... ..-.++...-|++.+.|..-++.
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHH
Confidence 8773221 12224566677777766554443
No 128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.68 E-value=6.7e-05 Score=85.91 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCC--CcHHHHHHHH-----HHHHHHH------------H
Q 000202 708 MVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKN--LDLSTVLNAI-----AVQFSEI------------R 768 (1866)
Q Consensus 708 ~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~--f~~~~~~~~i-----~~~~~~~------------~ 768 (1866)
+-+.+.|+|++|+|||||++.+|++.... +|+.++||+++.. +++.++.+.| ..++... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999988766 9999999998766 9999999998 2222110 0
Q ss_pred hhhhhhhccCeEEEEEEccCC
Q 000202 769 RAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 769 ~~~~~~~~~~r~LlVlddv~~ 789 (1866)
........+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 011112337899999999843
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.0002 Score=76.14 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCc
Q 000202 982 YTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDR 1061 (1866)
Q Consensus 982 ~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 1061 (1866)
++++.+..+...+.....+.+.|+|.+|+||||+++.+++... ..-..++++..............+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 3556777777777665667899999999999999999965432 111345566554433222221111100
Q ss_pred cCHHHHHHHHHHHhCCCcEEEEEeCCCCc-----cchhhhcCCCCCC---CCCcEEEEccCChh
Q 000202 1062 ETDAQVAEKLWQVLNGEKFLLLLDDVWEQ-----IDLEAVGIPVPGS---ENGSKIFMASRELD 1117 (1866)
Q Consensus 1062 ~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~---~~gs~IivTTR~~~ 1117 (1866)
............+..+||+||++.. ..+..+....... ..+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112233456789999999852 2222222222211 35678888887543
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.65 E-value=0.00031 Score=87.96 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=90.1
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEEeec
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFACNVR 247 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 247 (1866)
...++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...+ ....|+....
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 345677899999888876531 112355689999999999999999999775542 2233443111
Q ss_pred cccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH-hhcCcEEEEEecCCCH---------H-----HHHHHhhcc
Q 000202 248 AAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR-LARKKVLIVFDDVNHP---------R-----QIELLIGRL 312 (1866)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~---------~-----~~~~l~~~~ 312 (1866)
. +++....+... ...... ....++. ..+++++|+||+++.. . .+..++..+
T Consensus 260 ~------------eLl~kyvGete-~~ir~i-F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 P------------ELLNKYVGETE-RQIRLI-FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred h------------hhcccccchHH-HHHHHH-HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1 01111000000 000000 0111111 2347899999999742 1 123444444
Q ss_pred CCCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 313 DRFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 313 ~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.... .+..||.||.....+... ..+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3322 344455566544332211 225568999999999999998876
No 131
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.65 E-value=4.8e-05 Score=90.10 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=59.4
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCC--cHHHHHHHHHHHH-------------H----HHHh
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNL--DLSTVLNAIAVQF-------------S----EIRR 769 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f--~~~~~~~~i~~~~-------------~----~~~~ 769 (1866)
-+=.-|+|++|+||||||+.||++...+ ||+.++||++++.+ ++.++.+.|...+ . ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3566799999999999999999988777 99999999999988 8888888885221 0 0011
Q ss_pred hhhhhhccCeEEEEEEccC
Q 000202 770 AENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 770 ~~~~~~~~~r~LlVlddv~ 788 (1866)
.......+++.+|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 1111234788999999994
No 132
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00061 Score=84.58 Aligned_cols=178 Identities=17% Similarity=0.218 Sum_probs=103.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--------ccceEEEEeecccccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--------FEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 254 (1866)
....+++|.+..++.+...+..+. -.+.+.++|.+|+||||+|+++++.+... |...++-. ... ....
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-SNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-cCCC
Confidence 345678999999999999997542 34578899999999999999998866431 21111110 000 0000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc-ccchh
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR-DKQVL 331 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR-~~~v~ 331 (1866)
.+-..++...+... -..+++-++|+|+++. ...++.++..+......+.+|++|. ...+.
T Consensus 90 -~~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 -VDDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred -HHHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 11111222211100 0123455799999974 4456667665554444566665553 33332
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
... ....++++++++.++....+...+..... .-..+.+..+++.++|.+
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGAL 203 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 221 22457899999999988888776533221 112456777777777643
No 133
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00056 Score=87.69 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=106.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+....... . .-.+. -.....+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~pCg~-------C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TPCGV-------CESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Ccccc-------cHHHHHh
Confidence 345689999999999999998542 345678999999999999999998654321000 0 00000 0000000
Q ss_pred HHHHhccccccCc---c--chhH-HHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc-c
Q 000202 263 LSKLLNDRNVKNF---Q--NISV-NFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD-K 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~--~~~~-~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~-~ 328 (1866)
...-....+...+ . ..+. ..+.+. ..+++-++|+|+++ +....+.|+..+........+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 0000000000000 0 0000 111111 13455688999997 566778888877766667776665543 3
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....|++.+++.++..+.+.+.+-.... .-..+....|++.++|-+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSP 213 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 333221 22578999999999988888765532221 112345667788887755
No 134
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0012 Score=80.33 Aligned_cols=191 Identities=16% Similarity=0.168 Sum_probs=113.5
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.++.+.+|+.+++++...|..- +....-+.|+|.+|+|||+.++.+++++...... ++++... .......+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHHH
Confidence 3455999999999999888632 1122238899999999999999999987776443 3555422 223445677
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh--hcCcEEEEEecCCCH-----HHHHHHhhccCCCCCCCEEEE--Eccccch
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL--ARKKVLIVFDDVNHP-----RQIELLIGRLDRFASGSQVII--TTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~Iii--TTR~~~v 330 (1866)
.+++.++................+.+.+ +++.+++|||+++.. +.+-.|....... .++|+| ++-+...
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 7777776533221111111224455555 357899999999742 2233333322222 455443 3433332
Q ss_pred hc--------cCccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhCC
Q 000202 331 LT--------NCEVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 331 ~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.. ..+.. .+..++-+.+|-.+.+..++ |......++.-+++..++..-+|
T Consensus 169 ~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 169 LDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 22 22222 26688888888888887654 45555555555666666666665
No 135
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00073 Score=90.09 Aligned_cols=185 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc--c-eEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE--G-SYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+..... . .|=.+ .-..
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC~ 79 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSCV 79 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHHH
Confidence 34679999999999999998543 3456789999999999999999986642110 0 00000 0000
Q ss_pred HHHHHHhccccccCc---cchhH---HHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 261 ELLSKLLNDRNVKNF---QNISV---NFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~---~~~~~---~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+...-....+...+ ..... ..+++. ..+++-++|||+++ +.+..+.|+..+......+.+|++|.+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~ 159 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTE 159 (824)
T ss_pred HHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000000000000000 00000 111111 23455678899998 456677777777766677777766643
Q ss_pred -cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 328 -KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 328 -~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..+.... ....+|++..++.++..+.+.+..-.... ....+....|++.++|.+
T Consensus 160 ~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdl 215 (824)
T PRK07764 160 PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSV 215 (824)
T ss_pred hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 3344322 23578999999999988888765422111 112345677888888876
No 136
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.62 E-value=0.00068 Score=76.89 Aligned_cols=174 Identities=17% Similarity=0.276 Sum_probs=90.4
Q ss_pred CCc-eeehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHH
Q 000202 186 KDL-IGVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 186 ~~~-vGr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
++| +|-..+. ................+.|+|..|+|||.|..++++++....+. ++|+. . ..+..
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHH
Confidence 345 4643432 22333333333335578999999999999999999987765443 34443 1 12333
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC---HHHH-HHHhhccCC-CCCCCEEEEEccccch-hc--
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH---PRQI-ELLIGRLDR-FASGSQVIITTRDKQV-LT-- 332 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~-~~l~~~~~~-~~~gs~IiiTTR~~~v-~~-- 332 (1866)
.+...+... ....++..++. -=+|+|||++. ...| +.+...+.. ...|.+||+|++...- +.
T Consensus 78 ~~~~~~~~~---------~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRDG---------EIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHTT---------SHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHcc---------cchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 333322221 11234455553 34678999974 2222 222222211 1347799999965421 11
Q ss_pred ------cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 333 ------NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 333 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.....-++++++++.++-.+++.+.+-...- .-.++.+.-+++.+.+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRR 200 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTS
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcC
Confidence 1223457899999999999999887742221 1224455555555443
No 137
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0006 Score=87.92 Aligned_cols=190 Identities=14% Similarity=0.150 Sum_probs=109.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccce---EEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGS---YFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+....... .-+...+. ..-.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~-------c~~C 92 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV-------GEHC 92 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc-------cHHH
Confidence 345689999999999999988543 345688999999999999999999664332100 00000000 0000
Q ss_pred HHHHHHHhccccccCc---cchhHHHHHH---Hh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-
Q 000202 260 KELLSKLLNDRNVKNF---QNISVNFQSK---RL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT- 325 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~---~~~~~~~l~~---~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT- 325 (1866)
..+.... ..+.... .....+.+++ .+ ..++-++|+|+++. ....+.|+..+....+.+.+|++|
T Consensus 93 ~~i~~g~--h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 93 QAIMEGR--HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHhcCC--CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 1111000 0000000 0001111221 11 23455789999974 456777777776666677776655
Q ss_pred cccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 326 RDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 326 R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
..+.+.... .....+++..++.++....+.+.+-.... .-..+....|++.++|.+.
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVR 228 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 434443222 23468899999999998888876532221 1223567788888888664
No 138
>PRK04195 replication factor C large subunit; Provisional
Probab=97.58 E-value=0.002 Score=82.63 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=102.5
Q ss_pred ccccchhhHHHHHHHHHhcc----CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVND----VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~----~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
+..+.|.++.++.+..|+.. ...+.+.|+|++|+||||+|+.+++... |+. +-++.+...+.. ..+.++.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHHHHH
Confidence 34566777777777777632 2256789999999999999999966431 222 223444322222 2222222
Q ss_pred HhccCCCCccCHHHHHHHHHHHhC-CCcEEEEEeCCCCcc------chhhhcCCCCCCCCCcEEEEccCChh-hhc-cC-
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVLN-GEKFLLLLDDVWEQI------DLEAVGIPVPGSENGSKIFMASRELD-VCR-NM- 1122 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~IivTTR~~~-v~~-~~- 1122 (1866)
..... ..+. .++-+||+|+++... .+..+...+.. .+..||+|+.+.. ... ..
T Consensus 87 ~~~~~---------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 87 EAATS---------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred Hhhcc---------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 22110 0112 367899999998632 13444333321 2344666664432 111 11
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
.....+.+.+++..+....+.+.+......- -.+....|++.++|..-.+......+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 1235789999999998888877664322111 134577899999998766654444443
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.57 E-value=0.00039 Score=84.56 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=87.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|.+...+.+..++..+. -..++.++|.+|+||||+|+++++.....| .++. .. . ... ...+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~---~-~~~-~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GS---D-CRI-DFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cC---c-ccH-HHHHH
Confidence 4456789999999999999987532 356778899999999999999998763322 1221 11 1 111 11111
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccccchhc-cC-cc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EV 336 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~ 336 (1866)
.+....... .+...+-+||+|+++.. +..+.+...+.....++++|+||.....+. .. ..
T Consensus 87 ~l~~~~~~~---------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTV---------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhh---------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 111110000 01234557899999743 333444443444556789999987543211 11 12
Q ss_pred ceeeecCCCCHHHHHHHHHh
Q 000202 337 DHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 24567777778777766543
No 140
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00061 Score=85.63 Aligned_cols=161 Identities=15% Similarity=0.223 Sum_probs=91.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|..|+|||+|+.++++.+....+. ++|+. ...+...+...+.... ...+..++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHH
Confidence 4568999999999999999999976543322 23332 1233344433332210 011223333
Q ss_pred hhcCcEEEEEecCCC----HHHHHHHhhccCC-CCCCCEEEEEccccc---------hhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNH----PRQIELLIGRLDR-FASGSQVIITTRDKQ---------VLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
++ ..-+|||||+.. ....+.+...+.. ...|..||+|+.... +...+...-++++++++.++-.+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 34 344788999963 2222333332221 134567888876431 12222334567899999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
++.+++-.......-.++...-|++.++|.|-.+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ 317 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIK 317 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHH
Confidence 99887732111012335667778888888775444
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00069 Score=87.47 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=105.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-.. ++...|.....+ ....-...+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHH
Confidence 345689999999999999887542 34568899999999999999999865331 110111110000 000000000
Q ss_pred HHHHHHhcccccc-----Cccchh-HHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc-
Q 000202 261 ELLSKLLNDRNVK-----NFQNIS-VNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR- 326 (1866)
Q Consensus 261 ~ll~~~~~~~~~~-----~~~~~~-~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR- 326 (1866)
.+... ...+.. .....+ ...+.+. ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.
T Consensus 89 ~~~~g--~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 89 DFDAG--TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHhcc--CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 00000 000000 000000 0111111 233455789999974 4557777777766556666665553
Q ss_pred ccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 DKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
...+.... ....++++.+++.++....+.+.+-.... .-..+.+..+++.++|..
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdl 222 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSM 222 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCH
Confidence 33333221 23578999999999988777765422111 112455777888888743
No 142
>PRK09087 hypothetical protein; Validated
Probab=97.56 E-value=0.00069 Score=77.10 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=82.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.+.|||..|+|||+|++.++.... ..+++.. .+...+...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 45689999999999999999865321 1133321 1222221111 11
Q ss_pred cEEEEEeCCCCc----cchhhhcCCCCCCCCCcEEEEccCC---------hhhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1079 KFLLLLDDVWEQ----IDLEAVGIPVPGSENGSKIFMASRE---------LDVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1079 r~LlVlDdv~~~----~~~~~l~~~l~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|++||+... +.+-.+...+. ..|..||+|++. +++...+....++++++++.++-.+++.++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999642 22222221111 246678888873 333444555679999999999999999988
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
+....- .--+++..-|++.+.|..-++..
T Consensus 166 ~~~~~~-~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQL-YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCC-CCCHHHHHHHHHHhhhhHHHHHH
Confidence 754211 11234556677777776665554
No 143
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.56 E-value=0.00058 Score=80.17 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=80.8
Q ss_pred CceeehhhHHHHHHhhh----------c---CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccc
Q 000202 187 DLIGVEWRIKEIESLLR----------T---GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEE 251 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~----------~---~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~ 251 (1866)
.++|.+...++|.+... . ..+....+.++|.+|+||||+|+.+++.+... .....++.....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 46777666655543321 0 12235568899999999999999999865321 111222221111
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC----------HHHHHHHhhccCCCCCCCEE
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH----------PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~I 321 (1866)
+ +.....+.. .......+.+ ...-+|++|+++. .+.++.+...+........+
T Consensus 84 -----~----l~~~~~g~~-----~~~~~~~~~~---a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v 146 (261)
T TIGR02881 84 -----D----LVGEYIGHT-----AQKTREVIKK---ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL 146 (261)
T ss_pred -----H----hhhhhccch-----HHHHHHHHHh---ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence 1 111111110 0000111211 1234889999974 34566666665544444455
Q ss_pred EEEccccch----------hccCccceeeecCCCCHHHHHHHHHhhcC
Q 000202 322 IITTRDKQV----------LTNCEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 322 iiTTR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|+++..... ... ....+++++++.+|-.+++.+.+-
T Consensus 147 ila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHH
Confidence 666543322 111 134688999999999999887663
No 144
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.00012 Score=87.77 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCC-CCCCCChhhcCCCCCcEE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT-RIKSLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~-~i~~lp~~i~~L~~L~~L 1450 (1866)
..+.+++.|+++++.+..+|.+. .+|+.|.+++|..+..+|..+ ..+|++|++++| .+..+|.+ |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceE
Confidence 34678899999999999988433 469999999988888888755 368999999999 78888865 5556
Q ss_pred eccccc--CcccCCccccCCCCCcEEEccCCC-C--CcCChhhcCC-Cccceecccccc
Q 000202 1451 ILRDCD--FLFVLPPEVGSLECLEVLDLRGTE-I--KMLPKEIGKL-TSLRYLTVFFFG 1503 (1866)
Q Consensus 1451 ~L~~~~--~~~~lP~~i~~L~~L~~L~l~~~~-i--~~lp~~i~~L-~~L~~L~l~~~~ 1503 (1866)
+++++. .+..+|.++ +.|.+.+++ . ..+|. .| ++|++|.+.+|.
T Consensus 118 ~L~~n~~~~L~~LPssL------k~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 118 EIKGSATDSIKNVPNGL------TSLSINSYNPENQARIDN---LISPSLKTLSLTGCS 167 (426)
T ss_pred EeCCCCCcccccCcchH------hheecccccccccccccc---ccCCcccEEEecCCC
Confidence 665433 356667654 445543321 1 11111 12 467777776654
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.001 Score=83.64 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=104.9
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---c-ceE----------------E
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---E-GSY----------------F 242 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---~-~~~----------------~ 242 (1866)
....+++|.+..++.+...+..+. -.+.+.++|..|+||||+|+.+++.+...= + ..| |
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345689999999999999997542 245678999999999999999998653210 0 000 1
Q ss_pred EEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCE
Q 000202 243 ACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQ 320 (1866)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ 320 (1866)
+...+. ...... -.+++...+ -..-...++-++|+|+++. .+..+.|+..+........
T Consensus 93 ~~i~g~--~~~gid-~ir~i~~~l----------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 93 LEIDGA--SHRGIE-DIRQINETV----------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred EEeecc--ccCCHH-HHHHHHHHH----------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 100000 000000 000111000 0001135567889999974 4456667766665555677
Q ss_pred EEEEccc-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 321 VIITTRD-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 321 IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+|++|.+ ..+.... .....+++++++.++..+.+...+-... ..-..+.+..+++.++|.+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSL 216 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 7766643 3333221 2346789999999998888876552211 1123456778888888754
No 146
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0025 Score=81.61 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=105.6
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+..++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-...++ +.++..-...+.|...-
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGR 86 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCC
Confidence 3445677778888888888766544 557999999999999998754211111100 00111111111111100
Q ss_pred -----ccCCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hccC
Q 000202 1055 -----SLHCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRNM 1122 (1866)
Q Consensus 1055 -----~~~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~~ 1122 (1866)
..+.......+++.+.+.. -..++.-++|||++... ..++.+...+.......++|+||++.+- ....
T Consensus 87 h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 87 FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 0000001111222111111 12345568889999864 4477666655444456777777776543 2111
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
.-...++++.++.++..+.+.+.+...... --.+..+.|++.++|.. -|+..+
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113689999999999999988776432211 12345667889998865 354443
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.00075 Score=87.32 Aligned_cols=184 Identities=11% Similarity=0.146 Sum_probs=105.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-....+- . ..... ..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~----p------C~~C~-~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE----P------CQECI-EN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC----c------hhHHH-Hh
Confidence 345679999999999999998543 355678999999999999999998653211000000 0 00000 00
Q ss_pred HHHHhccccccCc---c--chh-HHHHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcc-cc
Q 000202 263 LSKLLNDRNVKNF---Q--NIS-VNFQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTR-DK 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~--~~~-~~~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR-~~ 328 (1866)
.....+.... . ... ...+.+. ..+++-++|+|+++ +...+.+|+..+........+|++|. ..
T Consensus 83 ---~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 83 ---VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred ---hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 0000000000 0 000 1111111 23566688999997 45667778777666555666565554 33
Q ss_pred chhcc-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTN-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+... ......+++.+++.++..+.+...+-... .....+.+..+++.++|-+
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCH
Confidence 44322 12346899999999998888876542211 1112345677888888754
No 148
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.54 E-value=0.0012 Score=84.53 Aligned_cols=166 Identities=11% Similarity=0.159 Sum_probs=99.8
Q ss_pred cchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCccc---ccccc--eEEEEEecCCCCHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEV---KVMFH--VIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~~~ 1049 (1866)
+.+|++++++|...|. .....++-|+|++|.|||+.++.|.+.-.. +.... .+++|.+..-.+...+...
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 4578888888887772 222356789999999999999999643211 11222 2467777776788889999
Q ss_pred HHHHhccCCCC-ccCHHHHHHHHHHHhC---CCcEEEEEeCCCCcc-----chhhhcCCCCCCCCCcEEEE--ccCChh-
Q 000202 1050 VLRQLSLHCKD-RETDAQVAEKLWQVLN---GEKFLLLLDDVWEQI-----DLEAVGIPVPGSENGSKIFM--ASRELD- 1117 (1866)
Q Consensus 1050 i~~~l~~~~~~-~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~Iiv--TTR~~~- 1117 (1866)
|++++...... .....+....+...+. +...+||||+|+... .+-.+... +. ..+++|+| +|....
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~-~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PT-KINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hh-ccCCeEEEEEecCchhc
Confidence 99998543322 2223344555555542 234689999997521 12112111 11 23555544 333222
Q ss_pred -------hhccCCCCcEEEecCCChHHHHHHHHHHhcC
Q 000202 1118 -------VCRNMDVNMVVKLETLSMKDAWELFCKEVGG 1148 (1866)
Q Consensus 1118 -------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 1148 (1866)
+...++. ..+..++++.++-.+++..++..
T Consensus 915 perLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 915 PERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHh
Confidence 2222222 23566999999999999988753
No 149
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00011 Score=88.12 Aligned_cols=32 Identities=28% Similarity=0.192 Sum_probs=19.2
Q ss_pred CCcCEEeccCCccccccccCCCCCccEEEEEcC
Q 000202 1774 PSLKKLRLHHLPELANIWRNDWPSLEYISFYGC 1806 (1866)
Q Consensus 1774 p~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~C 1806 (1866)
++|+.|.+++|..+. ++...-.+|+.|++..|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 467777777777543 22223357777777654
No 150
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00075 Score=86.02 Aligned_cols=187 Identities=12% Similarity=0.101 Sum_probs=104.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-...... ...+.. -...+.+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-----~~pCg~----C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-----GEPCNT----CEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-----CCCCcc----cHHHHHH
Confidence 344678999988888998887542 245688999999999999999998654211000 000000 0000011
Q ss_pred HHHHhccccccCcc---chhH---HHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNFQ---NISV---NFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~~---~~~~---~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+...+. .... ..+.+. ..+++-++|||+++. .+..+.|+..+........+|++|.+.
T Consensus 83 ~~g--~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 83 TQG--MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred hcC--CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 000 000000000 0000 111111 235667899999974 456677777765544566666666553
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....+++++++.++..+.+...+..... .-..+.+..|++.++|.+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSV 214 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 333221 22457899999999998888775533221 122455777888887743
No 151
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00089 Score=87.35 Aligned_cols=183 Identities=11% Similarity=0.097 Sum_probs=105.4
Q ss_pred cccccchhhHHHHHHHHHhccCCccE-EEEEcCCCchHHHHHHHHhcCcccccc-------------------cceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTASK-IGVYGVGGIGKTAALKALISYPEVKVM-------------------FHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~-------------------F~~~~wv 1035 (1866)
.+..++|.+.-++.+.+++...+..- +.++|..|+||||+|+.+++.-.-... |..++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 34456777777777888887666654 579999999999999999643211100 1111222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
.......+.. .+.|...+. .....+++-++|||++.. ....+.+...+.......++|++|
T Consensus 94 dAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 1111111111 122221110 112246778999999985 355666655554333455666555
Q ss_pred CC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1114 RE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1114 R~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.+ ..+... ..-...|++++|+.++..+.+.+.+..... .--.+....|++.++|.|--+..+
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 444322 111368999999999999888876643211 112345677999999988644433
No 152
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=9.2e-06 Score=99.32 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=76.4
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCc-cccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPP-EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
..+++|+.|||++|++.+.- .+..|++|++|||++|. +..+|. +...+ .|+.|++++|.++++ .+|.+|.+|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhcc
Confidence 56788899999999888765 78888899999999887 556664 22233 388999999988877 478899999999
Q ss_pred ccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1498 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
++++.--. +... ...+..|..|..|.+.+++.
T Consensus 260 DlsyNll~---~hse-------L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLS---EHSE-------LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhh---cchh-------hhHHHHHHHHHHHhhcCCcc
Confidence 88762110 0111 12256677788888887664
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00084 Score=84.39 Aligned_cols=152 Identities=15% Similarity=0.206 Sum_probs=84.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|.+|+|||+||.++++.+...++. ++|+. . .++..++...+... .....++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~---------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG---------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc---------cHHHHHHH
Confidence 4569999999999999999999987765533 33432 1 12333333333211 11223334
Q ss_pred hhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEcc-ccchh--------ccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTR-DKQVL--------TNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
.+...-+||+||++.. ... +.+...+.. ...|..||+||. .+.-+ ..+....++++++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 4445568999999732 111 222222111 123557888885 32211 122234577899999998888
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
++.+.+-.... .-.++....|++.+.|
T Consensus 271 IL~~~~~~~~~--~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 271 IARKMLEIEHG--ELPEEVLNFVAENVDD 297 (440)
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHhcccc
Confidence 88877632111 1123455556665544
No 154
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.50 E-value=0.00033 Score=92.22 Aligned_cols=168 Identities=16% Similarity=0.198 Sum_probs=93.0
Q ss_pred ccccchhhHHH---HHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 977 VTAVNYTQRNV---RKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 977 ~~~~~~~~~~~---~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
+.++.|.+..+ ..+.+.+...+...+.++|++|+||||||+.+++. ....|. .++.+. ..+.+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~d-------- 92 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVKD-------- 92 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhHH--------
Confidence 34456665544 24555566666677889999999999999999653 223331 111110 01111
Q ss_pred hccCCCCccCHHHHHHHHHHHh--CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc--cCChh--hhcc-CCC
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL--NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA--SRELD--VCRN-MDV 1124 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT--TR~~~--v~~~-~~~ 1124 (1866)
..+......+.+ .+++.+|||||++. ..+++.+...+ ..|+.++++ |.+.. +... ..-
T Consensus 93 ----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR 159 (725)
T PRK13341 93 ----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSR 159 (725)
T ss_pred ----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhcc
Confidence 111112222222 24678999999975 44556655433 245556653 44321 1111 111
Q ss_pred CcEEEecCCChHHHHHHHHHHhcC------CCCCchHHHHHHHHHHHcCCChH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGG------IIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~------~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
..++.+++|+.++...++.+.+.. .....--++....|++.+.|.--
T Consensus 160 ~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 160 SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 357899999999999999876541 11111123445667888887643
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0011 Score=83.84 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=107.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccc--eEEEE---------------
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEG--SYFAC--------------- 244 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~--------------- 244 (1866)
....++||-+...+.|...+..+. -.+...++|..|+||||+|+.+++.+-. .... .|..+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345679999999999999987543 3456789999999999999999986532 1100 01000
Q ss_pred eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEE
Q 000202 245 NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 245 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..... .......+ +++....... -..+++-++|+|+++ +.+..++|+..+....+.+++|
T Consensus 90 eldaa-s~~gId~I-Relie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 90 EMDAA-SNRGIDDI-RELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred Eeccc-cccCHHHH-HHHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 00000 00001111 1111110000 011345688999997 4566777877777666778888
Q ss_pred EEccccch-hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 323 ITTRDKQV-LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 323 iTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
++|.+..- .... .....+++.+++.++..+.+...+-.... .-..+.+..|++.++|-+
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSL 212 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcH
Confidence 77766422 1111 22468899999999998888765532221 112456778888888765
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0017 Score=78.09 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=62.3
Q ss_pred CcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccch-hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCC
Q 000202 290 KKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQV-LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLD 365 (1866)
Q Consensus 290 k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 365 (1866)
++-++|+|+++ +.+..+.++..+....+++.+|+||.+... +... .....+.+.+++.+++.+.+.... ...
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC---
Confidence 33445679998 466777887777766677888888877643 3221 234678999999999999887653 111
Q ss_pred hhHHHHHHHHHHHhCCCccee
Q 000202 366 AGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 366 ~~~~~~~~~i~~~~~GlPLAl 386 (1866)
..+.+..++..++|.|+..
T Consensus 182 --~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRA 200 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHH
Confidence 1234567788999999643
No 157
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00026 Score=89.82 Aligned_cols=186 Identities=10% Similarity=0.007 Sum_probs=102.9
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
.++.|.+.-++.+.+++...+.. .+.++|+.|+||||+|+.+++.-.-.+.+...+|.|.+. +.+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCC
Confidence 34567666777777777666554 458999999999999999865332212222222322211 000000000
Q ss_pred -----CCCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC-ChhhhccC-
Q 000202 1057 -----HCKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR-ELDVCRNM- 1122 (1866)
Q Consensus 1057 -----~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~~- 1122 (1866)
........+++ ..+.+. ..+++-++|+|+++.. ..++.+...+........+|++|. ...+....
T Consensus 86 dv~el~~~~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 86 DVLEIDAASNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred ceEEecccccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00001111111 112222 2356678999999853 446666655544334455555554 33432222
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.....+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1236899999999999999988764322111 2345677999999988543
No 158
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.47 E-value=0.00038 Score=83.24 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHH------HHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDA------QVAEK 1070 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~ 1070 (1866)
-..++|+|.+|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+..... .+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3569999999999999999998765444 7999999998855 7999999999654433222221111 11222
Q ss_pred HHHH-hCCCcEEEEEeCCCC
Q 000202 1071 LWQV-LNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~-L~~kr~LlVlDdv~~ 1089 (1866)
.... -+|++++|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 368999999999965
No 159
>PLN03025 replication factor C subunit; Provisional
Probab=97.46 E-value=0.0014 Score=79.43 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=97.6
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.++.|..+.++.+..++...+.+.+-++|.+|+||||+|+.+.+.-. ...|. .++-+..+...+.. ..+.+.+.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 344566666667677777666666678999999999999999854311 11121 11122222222222 2222222111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEec
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~ 1131 (1866)
..... .-.++.-+++||+++.- ...+.+...+......+++|+++... .+.... .-...++++
T Consensus 90 ~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 90 QKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156 (319)
T ss_pred hcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCC
Confidence 10000 00245668999999863 22333433333233456777766543 221111 112578999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
++++++....+.+.+......- -.+....|++.|+|..-.
T Consensus 157 ~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 157 RLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 9999999888887664322111 133467788899887643
No 160
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.46 E-value=0.0013 Score=81.08 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=100.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCH--HHHHH--HHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNT--RKIQK--QVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~~~~--~i~~~ 1053 (1866)
.+.|+++.++.+.+++.....+.+.++|..|+||||+|+.+.+.-.- ..+. ..+.++++...+. ..+.. .....
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFAHF 94 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchhhh
Confidence 45677777888888887666667889999999999999998553221 1121 2234443321100 00000 00000
Q ss_pred hccCCCCccCHHHHHHHH-HHH---h--CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-C
Q 000202 1054 LSLHCKDRETDAQVAEKL-WQV---L--NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-D 1123 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l-~~~---L--~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~ 1123 (1866)
++..........+....+ ... . .+.+-+||+||+... ...+.+...+......+++|+||... .+.... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s 174 (337)
T PRK12402 95 LGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS 174 (337)
T ss_pred hhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC
Confidence 000000000011111111 111 1 234458999999753 22333333332223446777776543 222211 1
Q ss_pred CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1124 VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1124 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
....+.+.+++.++....+.+.+...... --.+....+++.++|.+-.+..
T Consensus 175 r~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 175 RCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 13578899999999888888765432211 1234566788889887655443
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.44 E-value=0.00046 Score=90.18 Aligned_cols=174 Identities=18% Similarity=0.165 Sum_probs=93.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cc---cceEEEEeeccccccccHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HF---EGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~~~~~~~~~~~~~ 256 (1866)
|...+.++|++..++.+.+.+... ....+.|+|.+|+||||||+.+++.... .+ ...-|+...... ......
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~-l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT-LRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh-ccCCHH
Confidence 344567999999999888777533 3456999999999999999999874421 11 122344322210 011111
Q ss_pred HHHHHHH---------------HHHhcc-----------------ccccCccchhHHHHHHHhhcCcEEEEEecCCC--H
Q 000202 257 DLRKELL---------------SKLLND-----------------RNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--P 302 (1866)
Q Consensus 257 ~l~~~ll---------------~~~~~~-----------------~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~ 302 (1866)
.+...++ ...... +.....+...+..+.+.+++++++++-|+.|. .
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 1111110 000000 00011111123555666677777777665543 2
Q ss_pred HHHHHHhhccCCCCCCCEEEE--Eccccchhcc-C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 303 RQIELLIGRLDRFASGSQVII--TTRDKQVLTN-C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 303 ~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..|+.+...+....+...|+| ||++...... . .....+.+.+++.+|.++++.+.+
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA 366 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH
Confidence 334555444443344444555 6665532211 1 123467889999999999998765
No 162
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0016 Score=82.56 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=103.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---c--cceEEEEeeccccccccHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---F--EGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---f--~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....+++|-+..++.+...+..+. -.+...++|..|+||||+|+.++..+... . ++..- .+....... ...+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g-~~~d 89 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKG-SFPD 89 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcC-CCCc
Confidence 344679999999999999997643 34567789999999999999999865321 0 00000 000000000 0000
Q ss_pred HHHHHHHHHhccccccCccchh-HHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEc-ccc
Q 000202 258 LRKELLSKLLNDRNVKNFQNIS-VNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITT-RDK 328 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTT-R~~ 328 (1866)
+..-.. ......+ ...+.+. ..+++-++|+|+++. ....+.++..+....+...+|++| +..
T Consensus 90 --------~~eida-as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 90 --------LIEIDA-ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred --------EEEEeC-ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 000000 0000000 0112221 234566999999974 455677776666555566666555 333
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....+++.+++.++....+...+-.... .-..+.+..+++.++|.+.
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr 215 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMR 215 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 332211 22457899999999988888765522111 1223556778888887653
No 163
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.42 E-value=0.00034 Score=82.46 Aligned_cols=286 Identities=17% Similarity=0.176 Sum_probs=164.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
.+-+.++|.|||||||++-++ .+ +...|..-.|+.--.+. +...+.-.....++...... +.....+.....+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~--a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQA--AH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhh--Hh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHhh
Confidence 356899999999999999988 44 66778655554444444 44444444455466543322 2234556677889
Q ss_pred CcEEEEEeCCCCccc-hhhhcCCCCCCCCCcEEEEccCChhhhccCCCCcEEEecCCChH-HHHHHHHHHhcCCC----C
Q 000202 1078 EKFLLLLDDVWEQID-LEAVGIPVPGSENGSKIFMASRELDVCRNMDVNMVVKLETLSMK-DAWELFCKEVGGII----Q 1151 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~----~ 1151 (1866)
+|.++|+||-....+ -..+...+..+...-.|+.|+|+.. .+..+..+.+..|+.. ++.++|...+.... -
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999754311 1111112222334456788888533 3345677888888865 78899986653211 1
Q ss_pred CchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHh-hhC---CCCccccccchhhHHHHHHHhHhccCCcchh
Q 000202 1152 SPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHAS-RKF---SLPITIEECCTEDLIELLKFSFDQLKDHDVK 1227 (1866)
Q Consensus 1152 ~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~-~~~---~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk 1227 (1866)
...-.....+|.++..|.|++|...++..++- ...+--..+ +.+ .................+.+||.-|... -+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH-HH
Confidence 12234567789999999999999999888762 222222211 111 1111111112344677899999999877 57
Q ss_pred HHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhcccc--cCcccchhHHHHHHHH
Q 000202 1228 SCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLINEV--HNSIRMPGLMKDLAFG 1302 (1866)
Q Consensus 1228 ~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~~--~~~~~mhdlv~dla~~ 1302 (1866)
--|--++.|...+.-. ...|.+-|-... ...-....-+..+++.|++...+. ...++.-+-++.++..
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~---~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yala 312 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVD---VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALA 312 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccc---cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 8888888888765543 233444432110 001112223345667776653322 1234444445555443
No 164
>PRK08727 hypothetical protein; Validated
Probab=97.41 E-value=0.001 Score=76.50 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=84.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||+|++++++...- ....+.|+++.+ ....+.. ..+.+.
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~~------------------~~~~l~- 92 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLRD------------------ALEALE- 92 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHHH------------------HHHHHh-
Confidence 3356999999999999999999654222 223445665322 1111110 111121
Q ss_pred CcEEEEEeCCCCc---cchhhhcCCCCC--CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDLEAVGIPVPG--SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~~~l~~~l~~--~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
+--+|||||+... ..|....-.+.+ ..+|..||+|++... +...+....++++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 2348999999743 223321111111 124667999888532 22333334689999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
+++....- .--++...-|++.|.|-.-.+
T Consensus 173 ~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 86643211 112344556777777765444
No 165
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.41 E-value=0.00075 Score=90.82 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=93.3
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----c-c
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----F-E 238 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f-~ 238 (1866)
.+.+...++..+.. +...++++||+.++..+...|.... ..-+.++|.+|+|||++|+.+++++... + .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 45555555544433 2344679999999999999887543 2346799999999999999999976442 1 2
Q ss_pred ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-----------HHHHH
Q 000202 239 GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-----------RQIEL 307 (1866)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------~~~~~ 307 (1866)
..+|..+... +.. +..............+.+.-+.++++|++|+++.. +.-+.
T Consensus 239 ~~~~~~~~~~---------l~a-------~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~ 302 (731)
T TIGR02639 239 AKIYSLDMGS---------LLA-------GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL 302 (731)
T ss_pred CeEEEecHHH---------Hhh-------hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH
Confidence 2333322111 100 00000000000111122211346899999998732 12233
Q ss_pred HhhccCCCCCC-CEEEEEccccchhcc------C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 308 LIGRLDRFASG-SQVIITTRDKQVLTN------C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 308 l~~~~~~~~~g-s~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.+.+. .| -++|-+|..+..-.. . ....++++++++.++..+++....
T Consensus 303 L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 303 LKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 444432 23 344544443211000 0 123578999999999999988544
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0023 Score=73.71 Aligned_cols=152 Identities=21% Similarity=0.294 Sum_probs=94.8
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+.=|-+..+++|.+.... +-...+-|.+||++|.|||-||++++++.... |+.+++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH------
Confidence 3455677778877775542 12346679999999999999999999986554 4554443
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCCH-------------H---HHHHHhhccCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNHP-------------R---QIELLIGRLDRFAS 317 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~~~~ 317 (1866)
++.++..++.. .....+.+.. .+.+..|.+|.++.. + .+-.|+..+..|.+
T Consensus 220 ------ElVqKYiGEGa------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ------ELVQKYIGEGA------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ------HHHHHHhccch------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 33333333322 1111122222 456889999998641 1 23345555555544
Q ss_pred --CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 318 --GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 318 --gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
.-+||..|...+++.-. ..+..++++.-+.+.-.+.|.-|+-+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 45888877766554322 23678899977777778888877743
No 167
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.39 E-value=0.00023 Score=73.56 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=46.2
Q ss_pred ccEEEccccccccCchHHHHHHHHhhC-------CCce-E---------eeC-CCCCCCCCchhHHHHhhhcceEEEEec
Q 000202 16 YDVFLSFRGEDTRDNFTSHLYSALCQN-------NVET-F---------IDN-DLKRGDEIPESLLGTIEASTISIIIFS 77 (1866)
Q Consensus 16 ~dvFis~~~~d~~~~~~~~l~~~L~~~-------g~~~-~---------~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 77 (1866)
|.|||||+++|.. ..+..|...+... .+.. | .+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6799999999853 3667677666662 2221 1 111 223445789999999999999999999
Q ss_pred cCcccchhhHHHHHHHHHHHhhCCCEEEEEE
Q 000202 78 EKYASSKWCLDELLKILECKRNYGQIVIPVF 108 (1866)
Q Consensus 78 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 108 (1866)
++-..|.|+..|+..+++ .+..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998886 344566553
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.39 E-value=0.0014 Score=82.35 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=88.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|.+|+|||+||+++++.+..+.+. ++|+. . ..+..++...+... ......+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~~~~~~~---------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFVNALRNN---------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHHHHHHcC---------CHHHHHHH
Confidence 4568999999999999999999987765432 33432 1 12223333333211 11223334
Q ss_pred hhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEcccc-c--------hhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDK-Q--------VLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
+++ .-+|||||++.. ..-+.+...+.. ...|..+||||... . +...+....++++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 443 347889999732 111222222211 12356788888642 1 12222233578999999999999
Q ss_pred HHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 353 LFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 353 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
++.+.+-... ..-.++....|++.+.|.+-.
T Consensus 276 il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 276 ILQKKAEEEG--LELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHH
Confidence 9988774322 122245667777777776543
No 169
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0018 Score=81.94 Aligned_cols=194 Identities=11% Similarity=0.041 Sum_probs=105.0
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
.+.+++|.+.-++.+.+.+...+.. .+.++|..|+||||+|+.+.+.-.-. .... ..+.++..-...+.|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-----~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-----ITAQPCGQCRACTEID 88 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-----CCCCCCcccHHHHHHH
Confidence 3445677777788888888766654 46889999999999999985421110 0000 0000111111111111
Q ss_pred HHh-----ccCCCCccCHHHHHHHHHHH----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhh
Q 000202 1052 RQL-----SLHCKDRETDAQVAEKLWQV----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVC 1119 (1866)
Q Consensus 1052 ~~l-----~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~ 1119 (1866)
..- ..+.......+++.+.+... ..++.-++|||+++. ...++.+...+..-..+.++|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 100 00000111122222222111 245667899999985 35567766666543445565555544 4443
Q ss_pred ccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1120 RNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1120 ~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.... -...|.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-...
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2211 126789999999999988887664322111 123456789999999864443
No 170
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0018 Score=84.40 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=105.3
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----------------------ccce
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----------------------FEGS 240 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~~~ 240 (1866)
...++||-+...+.|...+..+. -.+.+.++|..|+||||+|+.++..+... |+..
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 44679999999999999987542 35568899999999999999999865321 1100
Q ss_pred EEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCC
Q 000202 241 YFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 318 (1866)
.+. .. .... .+-.++++.++... -..+++=++|+|+++. .+..+.|+..+......
T Consensus 94 -~ld-~~---~~~~-vd~Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 94 -ELD-AA---SNNS-VDDIRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred -Eec-cc---ccCC-HHHHHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 000 00 0000 01111111111000 0123455789999974 55677787777765667
Q ss_pred CEEEEEc-cccchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 319 SQVIITT-RDKQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 319 s~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.+|++| +...+.... ....++++++++.++....+.+.+-.... .-..+.+..|++.++|-.
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGM 216 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 7766655 444444322 23568999999999998888765532221 122345677888887643
No 171
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0018 Score=84.66 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=107.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+.......- ...+ ......+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~----~~~c----~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK----GRPC----GTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCC----ccCHHHHHH
Confidence 344689999999999998887543 3456789999999999999999986642111000 0000 000111111
Q ss_pred HHHHhccc-cccCccchhHH---HHHHHh-----hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-ch
Q 000202 263 LSKLLNDR-NVKNFQNISVN---FQSKRL-----ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QV 330 (1866)
Q Consensus 263 l~~~~~~~-~~~~~~~~~~~---~l~~~L-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 330 (1866)
......+. ..........+ .+.+.+ ..++-++|+|+++ +.+..+.|+..+......+.+|++|.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11000000 00000001111 111111 2356689999997 4456777777766555667777666443 33
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.... .....+++..++.++....+.+.+..... .-..+.+..+++.++|.+.
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMR 216 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 2211 22357889999999988888776533221 1124567788888888664
No 172
>PRK06620 hypothetical protein; Validated
Probab=97.36 E-value=0.00081 Score=75.82 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
+.+.|||.+|+|||+|++++++.... .++.... ... +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~----------~~~------------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF----------FNE------------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh----------hch------------------------hHHh-
Confidence 56899999999999999998775422 2221000 000 0111
Q ss_pred CcEEEEEecCCCHHH--HHHHhhccCCCCCCCEEEEEccccchh-------ccCccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 290 KKVLIVFDDVNHPRQ--IELLIGRLDRFASGSQVIITTRDKQVL-------TNCEVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 290 k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IiiTTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
..-+|++||++..++ +-.+...+. ..|..||+|++..... ..+...-++++++++.++-..++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 234678899974332 222222221 3467899999855331 11222347899999999888888776531
Q ss_pred CCCCChhHHHHHHHHHHHhCC
Q 000202 361 GDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 361 ~~~~~~~~~~~~~~i~~~~~G 381 (1866)
.. ..-.++..+-|++.+.|
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPR 181 (214)
T ss_pred cC--CCCCHHHHHHHHHHccC
Confidence 11 11124455556665544
No 173
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.36 E-value=0.0013 Score=83.70 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=95.0
Q ss_pred CCCce-eehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 185 SKDLI-GVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.++|| |..... ....++..........+.|+|.+|+|||+||+++++.+..+++. ++|+. . ..+.
T Consensus 121 fd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~ 190 (450)
T PRK00149 121 FDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFT 190 (450)
T ss_pred ccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHH
Confidence 34444 544432 33333333222234578999999999999999999988776543 23332 1 1222
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccc-----
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQ----- 329 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~----- 329 (1866)
.++...+... ....+.+.+++ .-+|||||++.. ...+.+...+.. ...|..|||||....
T Consensus 191 ~~~~~~~~~~---------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 191 NDFVNALRNN---------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred HHHHHHHHcC---------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 3333332111 11223344443 447899999631 112222222111 123556888886531
Q ss_pred ----hhccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 330 ----VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 330 ----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+...+....++++++++.++-.+++.+.+-... ..-.++...-|++.++|.
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~ 315 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSN 315 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCC
Confidence 122233345788999999999999988773211 112234556666665554
No 174
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.36 E-value=0.00087 Score=77.12 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=90.9
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHH
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDA 1065 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 1065 (1866)
.+..+.++......+.+.|+|+.|+|||+|++.+++.... .-..+.++++..... ...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~--------------------~~~ 89 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAW--------------------FVP 89 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhh--------------------hhH
Confidence 3334444433444567899999999999999998653221 123445665532100 000
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCc---cchhhhc-CCCCC-CCCC-cEEEEccCCh---------hhhccCCCCcEEEe
Q 000202 1066 QVAEKLWQVLNGEKFLLLLDDVWEQ---IDLEAVG-IPVPG-SENG-SKIFMASREL---------DVCRNMDVNMVVKL 1130 (1866)
Q Consensus 1066 ~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~-~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~l 1130 (1866)
+ +.+.+.. --+|++||+... .+|+... ..+.. ...| .++|+||+.. .+..++....++++
T Consensus 90 ~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 90 E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1 1111211 137889999752 3444221 11111 1133 3688888754 23444555679999
Q ss_pred cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1131 ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
+++++++-.+++.+++.... -.--++...-|++.+.|..-++..+
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 99999999999887664321 1112345566777777765544433
No 175
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0031 Score=77.69 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=101.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|.+..++.+.+.+...+.+ .+.++|+.|+||||+|+.+...-.-..... ..++..-...+++.....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 345667777777777777655543 568999999999999999954321110000 001111111111111100
Q ss_pred cC-----CCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~ 1122 (1866)
.+ .......++. ..+.+.+ .+++-++|+|++... ..++.+...+.......++|++|.+. .+....
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 00 0000111111 1122221 345568999999864 34666655554444556677666543 332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+-...+++++++.++..+.+.+.+...... --++.+..|++.++|.|-.+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 113688999999999988887655332111 113446678889999885433
No 176
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.00041 Score=82.94 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH------H
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV------N 281 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~------~ 281 (1866)
-..++|+|.+|+|||||++.+++.+..+ |+..+|+..+++ ......++++.++..+.............. +
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3468999999999999999999977665 999999998876 444567788877554433222111111000 1
Q ss_pred HHH-HHhhcCcEEEEEecCCCH
Q 000202 282 FQS-KRLARKKVLIVFDDVNHP 302 (1866)
Q Consensus 282 ~l~-~~L~~k~~LlVlDdv~~~ 302 (1866)
..+ .+-.+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 111 123679999999999753
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=8.7e-05 Score=97.07 Aligned_cols=138 Identities=22% Similarity=0.216 Sum_probs=90.7
Q ss_pred CCCcEEEccCCCCC--CCChhhc-CCCCCcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1422 TSLKVLNLSKTRIK--SLPETLV-NLKCLQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
.+|++||++|...- .-|..++ .|++|+.|.+++-.+.. .+-.-..+++||..||+|+|+++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 57888888876532 4455555 46888888888754322 1223345789999999999999988 789999999999
Q ss_pred ccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1498 TVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1498 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
.+.+..-.+.. ....+-+|++|+.|+++.......- ........--..|++|+.|++++..+.
T Consensus 201 ~mrnLe~e~~~----------~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQ----------DLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchh----------hHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchh
Confidence 88553221111 1223668999999999864433211 111112223356899999999977654
No 178
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0022 Score=81.35 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=103.7
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+..++|.+..++.+.+++...+. ..+.++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.+...-
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~-------~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT-------STPCEVCATCKAVNEGR 85 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC-------CCCCccCHHHHHHhcCC
Confidence 444567777788888888876654 4668999999999999998854221110000 01111111111111100
Q ss_pred cc-----CCCCccCHHHHHHHHH----HHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-
Q 000202 1055 SL-----HCKDRETDAQVAEKLW----QVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN- 1121 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~~~~~~l~----~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~- 1121 (1866)
.. +.......++..+.+. .-..++.-++|+|++... ...+.+...+.....+.++|++|.+.. +...
T Consensus 86 hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 86 FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH
Confidence 00 0000111122111111 112456678999999863 445555555544345567777776533 2111
Q ss_pred CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1122 MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1122 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
..-...+++++++.++..+.+.+.+......- -.+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 12236899999999999888877664322111 13345678889999775443
No 179
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.008 Score=73.19 Aligned_cols=192 Identities=15% Similarity=0.253 Sum_probs=118.6
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
+.+|+++++++...+ ......-+.|+|..|+|||+.++.+.. +++.... .+++|++-...+..++...|+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 457788888888777 333334488999999999999999954 3322211 17899999999999999999999
Q ss_pred hccCCCCccCHHHHHHHHHHHhC--CCcEEEEEeCCCCccc-----hhhhcCCCCCCCCCcEEE--EccCChhh------
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLN--GEKFLLLLDDVWEQID-----LEAVGIPVPGSENGSKIF--MASRELDV------ 1118 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~Ii--vTTR~~~v------ 1118 (1866)
++..........+..+.+.+.+. ++.++||||+++.... +-.|...... .+++|+ ..+.+-..
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--cceeEEEEEEeccHHHHHHhhh
Confidence 97544444555666777777774 5789999999975321 2222221111 145443 34444332
Q ss_pred --hccCCCCcEEEecCCChHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHcCC-ChHHHHHH
Q 000202 1119 --CRNMDVNMVVKLETLSMKDAWELFCKEVGGI----IQSPDIHLYARAIVKGCCG-LPLLTIVT 1176 (1866)
Q Consensus 1119 --~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~----~~~~~~~~~~~~I~~~c~G-lPLAi~~~ 1176 (1866)
....+. ..+..++-+.++-.+.+..++... .-.++.-+++..++..-+| .=.||..+
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 222222 236788888888888888776321 2233333444444444444 33344433
No 180
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.0014 Score=88.59 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------c
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------E 238 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~ 238 (1866)
.+++...++..+.. +...+.+|||+.++..+...|.... ..-+.++|.+|+||||||+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 45555555544433 3345689999999999999887543 22456999999999999999999875432 1
Q ss_pred ceEEEEeecccccc----ccHHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCCH-------HHHH
Q 000202 239 GSYFACNVRAAEET----GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNHP-------RQIE 306 (1866)
Q Consensus 239 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-------~~~~ 306 (1866)
..+|..+.+..... ..+..-+++ .+.+.- .+++++|++|++... .+.+
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~--------------------ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d 303 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKS--------------------VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD 303 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHH--------------------HHHHHHhcCCCeEEEEeChHHhccCCCcccccc
Confidence 22332222211000 000111111 111111 246899999998642 1111
Q ss_pred ---HHhhccCCCCCCCEEEEEccccchhccC-------ccceeeecCCCCHHHHHHHHHhh
Q 000202 307 ---LLIGRLDRFASGSQVIITTRDKQVLTNC-------EVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 307 ---~l~~~~~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
.+.+.+.. ..-++|-||.....-... ....++.|++++.+++.+++...
T Consensus 304 ~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 304 AANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 23343321 234556555542211100 12358999999999999997543
No 181
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0031 Score=80.19 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=100.5
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc----c---------------cccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV----K---------------VMFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~----~---------------~~F~~~~wv 1035 (1866)
.+..++|.+.-++.+.+.+...+.. .+.++|+.|+||||+|+.+++.-.- . +.|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3445677777778888888665543 4778999999999999999642111 0 012222222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
.......+.+ ..++.+.+.. -..+++-++|+|++.. ...++.+...+.......++|++
T Consensus 94 daas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 2211112211 1122222221 1245667999999975 34566666555544445666654
Q ss_pred cCC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1113 SRE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1113 TR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
|.+ ..+... ..-...+++++++.++....+.+.+..... .--......|++.++|.+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 443 333322 112368999999999988777765432211 1123345668888998663
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.32 E-value=2.8e-05 Score=76.39 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=73.3
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
+....|...+|++| .++.+|+.+....+.+..|+|++|.|+++|..+..++.|+.|+++.|+ +...|.-+..|.+|-.
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence 45567777788877 677788887777778888888888888888888888888888888887 4566777777888888
Q ss_pred EEccCCCCCcCChh
Q 000202 1474 LDLRGTEIKMLPKE 1487 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~ 1487 (1866)
|+..+|.+..+|-.
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 88888888777754
No 183
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.003 Score=81.65 Aligned_cols=188 Identities=15% Similarity=0.129 Sum_probs=105.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||.+...+.+...+..+. -.+.+.++|..|+||||+|+.+++.+-..-... ...+.. ......+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~~pC~~----C~~C~~i 82 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----GEPCNE----CEICKAI 82 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCc----cHHHHHH
Confidence 445689999999999999998643 355677899999999999999998653211000 000000 0001111
Q ss_pred HHHHhccccccCc---cchhHH---HHHHH-----hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNF---QNISVN---FQSKR-----LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~---~~~~~~---~l~~~-----L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+...+ .+...+ .+... ..+++-++|+|+++ +......|+..+........+|++|...
T Consensus 83 ~~g--~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 83 TNG--SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred hcC--CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 000 00000000 001111 11111 23456688999998 4566777877766545566666555433
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+.... .....+++.+++.++..+.+...+-.... .-..+.+..|++.++|-+.
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMR 215 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 332221 22457889999999988888766532221 1124556777888877553
No 184
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.30 E-value=0.003 Score=74.80 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=71.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhcc--ccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRH--FEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-+.++|.+|+||||+|+.+++.+... .....|+.... .+ +...+.+... ......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~--------~~----l~~~~~g~~~-----~~~~~~~~~--- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR--------DD----LVGQYIGHTA-----PKTKEILKR--- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH--------HH----HhHhhcccch-----HHHHHHHHH---
Confidence 58899999999999999988855432 11122333211 11 2222211111 001111221
Q ss_pred cCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhcc--C------ccceeeecCCCCHHH
Q 000202 289 RKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTN--C------EVDHIYQMKELVHAD 349 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~--~------~~~~~~~l~~L~~~e 349 (1866)
-..-+|+||++.. .+..+.+...+.....+.+||+++.....-.. . .....+++++++.+|
T Consensus 120 a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 120 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 1346889999962 23345556555544456677777653321111 0 113568999999999
Q ss_pred HHHHHHhhc
Q 000202 350 AHKLFTQCA 358 (1866)
Q Consensus 350 a~~Lf~~~a 358 (1866)
-.+++...+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988765
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.29 E-value=0.0009 Score=82.84 Aligned_cols=154 Identities=23% Similarity=0.312 Sum_probs=90.5
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
...++.|.+..++++.+.+.. +-...+.|.++|.+|+|||++|++++++....| +.....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF-----LRVVGS---- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EEEecc----
Confidence 345678999999999887742 112345688999999999999999999876554 221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC-
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF- 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 315 (1866)
.+. ....+.. .......+.....+.+.+|+||+++.. ..+..++..+..+
T Consensus 252 ----eL~----~k~~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 252 ----ELI----QKYLGDG-----PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ----hhh----hhhcchH-----HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 011 1110000 000111222223456788999987531 0122233222221
Q ss_pred -CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcC
Q 000202 316 -ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 316 -~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
..+.+||.||.....+... ..+..++++..+.++..++|..+..
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 2356788888755443221 2356789999999999999987763
No 186
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0025 Score=82.04 Aligned_cols=187 Identities=13% Similarity=0.134 Sum_probs=106.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++||-+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-..-.....-+ +.+ ...+++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC--~~C-------~~C~~i 82 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC--GEC-------SSCKSI 82 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC--ccc-------hHHHHH
Confidence 345689999999999999998543 3556889999999999999999986532100000000 000 000000
Q ss_pred HHHHhccccccCcc---chhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-
Q 000202 263 LSKLLNDRNVKNFQ---NISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK- 328 (1866)
Q Consensus 263 l~~~~~~~~~~~~~---~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~- 328 (1866)
... ...+..... +...+.+++. ..+++-++|+|+++ +...++.|+..+....+...+|++|.+.
T Consensus 83 ~~~--~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 83 DND--NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HcC--CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 000 000000000 0011111111 23556688999997 4556778887777656677777666443
Q ss_pred chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 329 QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 329 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.+.... .....+++.+++.++..+.+...+..... .-.++.+..|++.++|.+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~Gdl 214 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSV 214 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 332221 22457899999999988888766533221 122455677888888765
No 187
>PTZ00202 tuzin; Provisional
Probab=97.26 E-value=0.0023 Score=76.24 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=91.2
Q ss_pred cccccchhhHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
...+|.||++++..+...+.+ ...+++.|.|++|+|||||++.+..... ...++.-++ +..++++.|+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHHHH
Confidence 345688999988888877743 2345889999999999999999864322 123333333 67999999999
Q ss_pred HhccCCCCcc-C-HHHHHHHHHHHh-C-CCcEEEEEeCCCCccchhhhcC---CCCCCCCCcEEEEccCChhhhccCC--
Q 000202 1053 QLSLHCKDRE-T-DAQVAEKLWQVL-N-GEKFLLLLDDVWEQIDLEAVGI---PVPGSENGSKIFMASRELDVCRNMD-- 1123 (1866)
Q Consensus 1053 ~l~~~~~~~~-~-~~~~~~~l~~~L-~-~kr~LlVlDdv~~~~~~~~l~~---~l~~~~~gs~IivTTR~~~v~~~~~-- 1123 (1866)
+|+....... + ...+.+.+.+.- . |++.+||+-= .+...+..+.. .|.....-|.|++----+.+.....
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccC
Confidence 9997432221 1 123333333322 3 6777777731 11111211111 1222223455665433222211110
Q ss_pred -CCcEEEecCCChHHHHHHHHHH
Q 000202 1124 -VNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1124 -~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
--..|.+..++.++|...-.+.
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhc
Confidence 1146888999999987765543
No 188
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.0029 Score=82.45 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=105.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.....++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+-... +.... .. .......+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~----~~----Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP----EP----CGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC----CC----CcccHHHHH
Confidence 344679999999999999988643 234678999999999999999999654321 10000 00 000011111
Q ss_pred HHHHHhccc-cccCccchhHHHHHHH--------hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-c
Q 000202 262 LLSKLLNDR-NVKNFQNISVNFQSKR--------LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-Q 329 (1866)
Q Consensus 262 ll~~~~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~ 329 (1866)
+......+- ..........+.+++. ..+++-++|+|+++. .+..+.|+..+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 111000000 0000000111111111 124556889999984 566777877776555566666555443 3
Q ss_pred hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 330 VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 330 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.... .....+++..++.++....+.+.+-.... .-..+.+..|++.++|.+.
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr 217 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLR 217 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHH
Confidence 32221 23467888999999888777765532111 1123457788888887653
No 189
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.25 E-value=0.0024 Score=78.64 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=90.0
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
...++.|.+...+++.+.+.. +-...+-|.++|.+|+|||+||+++++.....| +.....
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~s---- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVGS---- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH----
Confidence 445788999999888876531 112356799999999999999999998765443 221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------H---HHHHHhhccCCC-
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------R---QIELLIGRLDRF- 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~---~~~~l~~~~~~~- 315 (1866)
.+.....+.. .......+.......+.+|+||+++.. . .+..++..+..+
T Consensus 214 --------~l~~k~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 --------EFVQKYLGEG-----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --------HHHHHhcchh-----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 1111111110 000112222233567899999998632 1 122333333222
Q ss_pred -CCCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhc
Q 000202 316 -ASGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 316 -~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+..||+||...+.+.. ...+..++++..+.++..++|..+.
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 235678888876544322 1235678999999999888887665
No 190
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.25 E-value=0.00052 Score=76.27 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=31.2
Q ss_pred cchhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccc
Q 000202 980 VNYTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVK 1026 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~ 1026 (1866)
|.||+++++++...+ .....+.+.|+|.+|+|||+|.+.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999988 33456789999999999999999985543333
No 191
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.23 E-value=0.005 Score=75.16 Aligned_cols=177 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe--cCCCCHHHHHHHHHHHhcc
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV--SRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~ 1056 (1866)
.+.|+++.++.+..++.....+.+.++|..|+||||+|+.+.+.-... .+.. .++.+ +.......+ +..+.++..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~~~-~~~i~~~~~ 94 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGIDVI-RNKIKEFAR 94 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchHHH-HHHHHHHHh
Confidence 456777788888888877666678999999999999999995532111 1111 12222 222222211 111111110
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~ 1132 (1866)
... .-...+-+|++|++... ...+.+...+......+++|+++... .+.... .....+++++
T Consensus 95 ~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 95 TAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred cCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 000 00123568999998753 22334443333333446677666432 221111 1124689999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
++.++....+.+.+...... --.+....+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999888887766432211 11335667888999987543
No 192
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0022 Score=80.34 Aligned_cols=130 Identities=12% Similarity=0.184 Sum_probs=75.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
...+.|+|..|+|||+||+++++.+......++|+.. ..+...+...+... ..+..++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~---------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG---------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc---------hHHHHHHHcc
Confidence 4568999999999999999999987654344445431 12222333332111 1122333333
Q ss_pred cCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHHHH
Q 000202 289 RKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHKLF 354 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 354 (1866)
..-+|++||+... ...+.+...+.. ...|..||+||... .+...+....++++.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3457888998642 112222222211 12356788888642 11222233467889999999999888
Q ss_pred Hhhc
Q 000202 355 TQCA 358 (1866)
Q Consensus 355 ~~~a 358 (1866)
.+.+
T Consensus 281 ~~k~ 284 (445)
T PRK12422 281 ERKA 284 (445)
T ss_pred HHHH
Confidence 8766
No 193
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.22 E-value=0.0021 Score=72.53 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=109.3
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
|.....++|-+..++.|.+.+.. ........+|++|.|||+-|+++++..-. -|++++--.+... ... ..+.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd--erG--isvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD--ERG--ISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc--ccc--ccch
Confidence 44557899999999999988876 35567889999999999999999986533 2444332111111 000 0000
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh------hcCc-EEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL------ARKK-VLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L------~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
++ ...+. +.+.-.. -.++ =.+|||+++. .+.|.++......+...+|.|+.+-.-..
T Consensus 106 r~------------Kik~f--akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 106 RE------------KIKNF--AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred hh------------hhcCH--HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 00 00000 0000000 0122 4678999985 66789998888887888887766543322
Q ss_pred hcc-C-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 331 LTN-C-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 331 ~~~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
... . ....-|..++|..++..+-+...+-..+. .-..+..+.|++.++|-
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGD 223 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCc
Confidence 211 1 12356789999999998888877743332 22345677888888773
No 194
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0051 Score=77.81 Aligned_cols=192 Identities=10% Similarity=0.037 Sum_probs=102.5
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+..++|.+.-+..+.+.+...+. ..+-++|..|+||||+|+.+++.-.-...... ..+ .++..-.....+...
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~----~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI----KTCEQCTNCISFNNH 94 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc----CCCCCChHHHHHhcC
Confidence 344566666667767666655543 46789999999999999999653211110000 000 000000111111100
Q ss_pred hcc-----CCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEE-ccCChhhhcc
Q 000202 1054 LSL-----HCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFM-ASRELDVCRN 1121 (1866)
Q Consensus 1054 l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~ 1121 (1866)
... +.......+++...+.. -..+++-++|+|+++. ...++.+...+......+++|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 000 00011112222221111 1346777899999986 3557777666554445566554 4444444332
Q ss_pred CC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1122 MD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1122 ~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
.. ....+++++++.++..+.+.+.+....... -.+....|++.++|.+--
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARD 225 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 21 235789999999999999988775332111 123456688899997743
No 195
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.21 E-value=0.0043 Score=76.76 Aligned_cols=149 Identities=16% Similarity=0.266 Sum_probs=81.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 1077 (1866)
.+-|.++|++|+|||++|+++++.. ...| +.+.. ..+.... ++ ........+.+.. ..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~----~~l~~~~---~g-------~~~~~i~~~f~~a~~~ 214 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG----SELVRKY---IG-------EGARLVREIFELAKEK 214 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----HHHHHHh---hh-------HHHHHHHHHHHHHHhc
Confidence 3458899999999999999996532 2222 22211 1111110 00 0111122222222 34
Q ss_pred CcEEEEEeCCCCcc----------------chhhhcCCCCC--CCCCcEEEEccCChhh-----hccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI----------------DLEAVGIPVPG--SENGSKIFMASRELDV-----CRNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~ 1134 (1866)
...+|+||+++... .+..+...+.. ...+.+||.||+.... .+....+..+.+...+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 66899999987421 11122211211 1235678888875432 2222345689999999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++..++|..++......++. -...+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 999999999887654322211 1344667777764
No 196
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0028 Score=82.40 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=102.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-c-cc-eEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-F-EG-SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....++||.+...+.|...+..+. -.+.+.++|..|+||||+|+.+++.+-.. . .. .|-.+ ...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c------------~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC------------PPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc------------HHH
Confidence 345689999999999999987542 34567899999999999999999865321 1 00 00000 000
Q ss_pred HHHHHHHhccccccCcc---ch---hHHHHHHH-----hhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcc
Q 000202 260 KELLSKLLNDRNVKNFQ---NI---SVNFQSKR-----LARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~---~~---~~~~l~~~-----L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
.++.. +...+....+ +. ....+.+. ...++-++|+|+++. ....+.|+..+....+.+.+|++|.
T Consensus 80 ~~i~~--g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 80 VEITE--GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHhc--CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 00000 0000000000 00 00111111 123455788999974 4567777777666556777766554
Q ss_pred c-cchhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 D-KQVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+ ..+.... .....+++++++.++....+...+-.... .-..+....|++.++|..
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSM 214 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCH
Confidence 3 3343221 22467889999999888777654422111 112455677888887743
No 197
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0033 Score=77.76 Aligned_cols=188 Identities=10% Similarity=-0.007 Sum_probs=102.4
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+..++|.+.-+..+.+++...+.. .+.++|..|+||||+|+.+.+.-.-...-... .+....+ .+.+....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---pCg~C~s----C~~i~~g~ 88 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---PCNECTS----CLEITKGI 88 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---ccCCCcH----HHHHHccC
Confidence 3445667777777777888766654 57899999999999999996532111100000 0000011 12222111
Q ss_pred ccCC-----CC---ccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SLHC-----KD---RETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~~~-----~~---~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
..+. .. ..+..++.+.+.. ...++.-++|+|++.. ...++.+...+........+|.+|.+ ..+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 1110 00 1111222222221 1245667899999986 45577776655433334555544443 4442221
Q ss_pred C-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1123 D-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1123 ~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
. -...|.+++++.++..+.+.+.+......- -.+....|++.++|.+-
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~-e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY-DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCChHH
Confidence 1 135799999999988888877654321111 13456779999999884
No 198
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.005 Score=77.59 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=98.3
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCccccc--c-----------------cceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKV--M-----------------FHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~-----------------F~~~~wv~ 1036 (1866)
+..++|.+.-+..+.+.+...+. ..+-++|++|+||||+|+.+.+.-.-.. . +.....+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 34466666666666676766655 3578999999999999999954211100 0 00112222
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+...++..+ +.|...+.. ....+++-++|+|++.. ....+.+...+........+|++|.
T Consensus 93 aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 2211112111 111111100 01235667999999975 3345555554443233344444444
Q ss_pred C-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHH
Q 000202 1115 E-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCG-LPLLTIVTAK 1178 (1866)
Q Consensus 1115 ~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPLAi~~~g~ 1178 (1866)
+ ..+.... .....+++++++.++....+.+.+...... --.+....|++.++| ++.|+..+-.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~-i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE-IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 3332221 123588999999999888888766422111 113345668887765 4566655544
No 199
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=6.5e-05 Score=83.10 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=93.9
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCcc-Cccccchhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRH-LEYVFTCSMI 1739 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~-L~~l~~~~~l 1739 (1866)
-.+|+.|+|+.|++++.-.... ....+..|..|+++.|.-....-. ..-...-++|..|+|++|.+ |..--.....
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred cccceeeccccccccchhHHHH--HHHhhhhHhhcCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 3588999999998887654321 334578889999987754333211 11112347899999999964 2221112345
Q ss_pred hhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccc---cccCCCCCccEEEEEcCccc
Q 000202 1740 QFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELAN---IWRNDWPSLEYISFYGCPKL 1809 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~---i~~~~lpsLe~L~I~~Cp~L 1809 (1866)
..+|+|.+|++++|..++.-. ...+..|+.|++|.++.|..+-. +-.+..|+|.+|++.||-.=
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDC------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HhCCceeeeccccccccCchH------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 679999999999997775411 12245899999999999986631 12246799999999998543
No 200
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.14 E-value=0.00045 Score=55.67 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=21.1
Q ss_pred CCcEEEccCCCCCCCChhhcCCCCCcEEecccccC
Q 000202 1423 SLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1423 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~ 1457 (1866)
+|++|++++|.|+.+|+.+++|++|++|++++|.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666666666666666666666653
No 201
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.11 E-value=0.0091 Score=65.76 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=81.4
Q ss_pred CcccccchhhHHHHHH---HHHh--ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHH
Q 000202 975 SNVTAVNYTQRNVRKI---FRYV--NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i---~~~l--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
..+.+|+|.++-++.+ ++.. .......+-.||++|+||||||..+.+ .....|. +.+.+.-....++ ..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPAIEKAGDL-AA 94 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--SCHHH-HH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchhhhhHHHH-HH
Confidence 3445677776654443 2222 234466788999999999999999954 3333332 2222110011111 11
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCC--------CCCC-----------CCcE
Q 000202 1050 VLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPV--------PGSE-----------NGSK 1108 (1866)
Q Consensus 1050 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l--------~~~~-----------~gs~ 1108 (1866)
++..+ +++-+|.+|.+..- .+-+.+..++ .+.+ +=+-
T Consensus 95 il~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 95 ILTNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HHHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HHHhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 11111 13345666666541 1111111100 0111 1123
Q ss_pred EEEccCChhhhccCCC--CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1109 IFMASRELDVCRNMDV--NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1109 IivTTR~~~v~~~~~~--~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
|=.|||...+...... ..+.+++..+.+|-.++..+.+.-.. -+-.++.+.+|+++|.|-|--+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHH
Confidence 4458887655443332 34668999999999999887664322 1223567889999999999543
No 202
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0048 Score=79.72 Aligned_cols=193 Identities=9% Similarity=0.048 Sum_probs=104.2
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+.+.-.-...+ ...++..-...+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHHcCC
Confidence 3445677777778888888766654 35789999999999999985421111000 001111112222222110
Q ss_pred cc-----CCCCccCHH---HHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SL-----HCKDRETDA---QVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~---~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.. +.......+ ++.+.+.. -..+++-++|||++.. ....+.+...+.......++|.+|.+ ..+....
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 00 000001112 22222111 1356777999999985 34566665544433344555554444 4443221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.-...|++++|+.++....+.+.+....... -......|++.++|.+--+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1136899999999999988887653221111 1234567889999988644333
No 203
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.10 E-value=0.0001 Score=92.85 Aligned_cols=118 Identities=26% Similarity=0.272 Sum_probs=58.4
Q ss_pred cEEEccCCCCCC-CCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQT-LPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~-l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+.+..|.+.. ...+..+++|..|++.+| .+..+...+ ..+.+|++|+|++|.|+.+. .+..|..|+.|++++|.
T Consensus 75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 75 KELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred Hhhccchhhhhhhhcccccccceeeeecccc-chhhcccch-hhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 333344444444 222445555555655554 333333321 44556666666666655543 24445556666666665
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVF 1500 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~ 1500 (1866)
+. .+ ..+..+.+|+.+++++|.+..++.. ...+.+|+.+.+.
T Consensus 152 i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 152 IS-DI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred ch-hc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 32 22 2344455666666666665555432 3455555555443
No 204
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.09 E-value=0.00044 Score=55.73 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=32.0
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP 1485 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp 1485 (1866)
++|++|+|++|.+ ..+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999985 467877899999999999999888765
No 205
>CHL00181 cbbX CbbX; Provisional
Probab=97.07 E-value=0.012 Score=69.73 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=72.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc-cc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR-HF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+.++|.+|+||||+|+.+++.... .+ ...-|+..... . +.....+... ......+.+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~----l~~~~~g~~~-----~~~~~~l~~--- 120 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------D----LVGQYIGHTA-----PKTKEVLKK--- 120 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------H----HHHHHhccch-----HHHHHHHHH---
Confidence 4789999999999999999885432 11 11123332211 1 2222211111 000112221
Q ss_pred cCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhccC--------ccceeeecCCCCHHH
Q 000202 289 RKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTNC--------EVDHIYQMKELVHAD 349 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~e 349 (1866)
-..-+|+||+++. .+..+.+...+.....+.+||+++....+.... .....+++++++.+|
T Consensus 121 a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 121 AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 1235889999963 334555665555545566777777543321100 124578999999999
Q ss_pred HHHHHHhhc
Q 000202 350 AHKLFTQCA 358 (1866)
Q Consensus 350 a~~Lf~~~a 358 (1866)
-.+++...+
T Consensus 201 l~~I~~~~l 209 (287)
T CHL00181 201 LLQIAKIML 209 (287)
T ss_pred HHHHHHHHH
Confidence 999988766
No 206
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0042 Score=78.99 Aligned_cols=131 Identities=14% Similarity=0.239 Sum_probs=76.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcccc--ceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+.|+|..|+|||.|+.++++.....+. .++|+. ...+..++...+... ....+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHH
Confidence 345899999999999999999998765442 234443 112333333322111 11223334
Q ss_pred hhcCcEEEEEecCCCH---HHH-HHHhhccCC-CCCCCEEEEEcccc---------chhccCccceeeecCCCCHHHHHH
Q 000202 287 LARKKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSQVIITTRDK---------QVLTNCEVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 352 (1866)
+++- =+|||||+... +.+ +.|...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+
T Consensus 375 y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 4433 47888999632 111 222222211 13366799998753 122233345678999999999999
Q ss_pred HHHhhcC
Q 000202 353 LFTQCAF 359 (1866)
Q Consensus 353 Lf~~~a~ 359 (1866)
++.+++-
T Consensus 454 IL~kka~ 460 (617)
T PRK14086 454 ILRKKAV 460 (617)
T ss_pred HHHHHHH
Confidence 9987773
No 207
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.06 E-value=0.0052 Score=68.33 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=57.9
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+.+-++|+|++... ...+.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+.+. + . .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i--~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G-I--S 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-C--C
Confidence 55668999998753 34555655554444556677666643 222211 12358999999999998888776 2 1 1
Q ss_pred chHHHHHHHHHHHcCCChH
Q 000202 1153 PDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPL 1171 (1866)
.+.+..|++.++|.|.
T Consensus 171 ---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 171 ---EEAAELLLALAGGSPG 186 (188)
T ss_pred ---HHHHHHHHHHcCCCcc
Confidence 3457789999999884
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.0031 Score=86.05 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=92.7
Q ss_pred hhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-----c-
Q 000202 164 RLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-----F- 237 (1866)
Q Consensus 164 ~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-----f- 237 (1866)
..+++...++.+.-.. ....+.+||+.+++.+.+.|.... ..-+.++|.+|+|||++|..++.++... .
T Consensus 160 ~~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 160 PTLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred hHHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 3556666665554221 234569999999999999997543 2235799999999999999999976532 1
Q ss_pred cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------HHHHH
Q 000202 238 EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------RQIEL 307 (1866)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~ 307 (1866)
...+|..+... +. .+.....+........+.+....++++|++|+++.. +.-+.
T Consensus 235 ~~~i~~l~~~~---------l~-------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 235 DKLVITLDIGL---------LL-------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred CCeEEEeeHHH---------Hh-------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 12344322211 10 000000001111112222222456899999999521 11222
Q ss_pred HhhccCCCCCCCEEEEEccccchhcc------C-ccceeeecCCCCHHHHHHHHHh
Q 000202 308 LIGRLDRFASGSQVIITTRDKQVLTN------C-EVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 308 l~~~~~~~~~gs~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
+.+.+.. ..-++|.+|.....-.. . ....+++++..+.++...++..
T Consensus 299 Lkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 299 LKPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred hHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3333221 22455655554432110 0 1235678888888888877764
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.0051 Score=83.73 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=49.0
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+.+...++..+... ...+.+|||+.++..+...|.... ..-+.++|.+|+|||+||+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r~---~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHhc---CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 455555555544332 345679999999999999887543 234669999999999999999998754
No 210
>PF14516 AAA_35: AAA-like domain
Probab=97.01 E-value=0.011 Score=71.68 Aligned_cols=204 Identities=9% Similarity=0.152 Sum_probs=114.9
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccc--cccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEE--TGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~--~~~~~~l 258 (1866)
+...+..|+|...-+++.+.+... -..+.|.|.-.+|||+|..++.++... .|. ++++... .... .......
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~-~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQ-QLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEee-cCCCcccCCHHHH
Confidence 345567889996666666666542 237899999999999999999987654 343 3344332 2211 1233444
Q ss_pred HHHHHHHHhcccccc---------Cccc--hhHHHHHHHh---hcCcEEEEEecCCCHH----HHHHHhhccC-CC----
Q 000202 259 RKELLSKLLNDRNVK---------NFQN--ISVNFQSKRL---ARKKVLIVFDDVNHPR----QIELLIGRLD-RF---- 315 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~---------~~~~--~~~~~l~~~L---~~k~~LlVlDdv~~~~----~~~~l~~~~~-~~---- 315 (1866)
++.++..+...-... .... .....+.+.+ .+++++|+||+|+..- ..+.+...+. |.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 444443333222100 0111 1113344432 2589999999997421 1122222111 10
Q ss_pred --CC-CCEEEEEcccc--chhcc-----CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 316 --AS-GSQVIITTRDK--QVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 316 --~~-gs~IiiTTR~~--~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.. ..-.+|...+. ..... .+....+++++++.+|...|..++-.. .. ....++|...+||+|--
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHH
Confidence 01 11122222111 11111 133457899999999999999876522 11 22288999999999999
Q ss_pred eeeecccccCC
Q 000202 386 LKVLGCYLCGR 396 (1866)
Q Consensus 386 l~~~g~~L~~~ 396 (1866)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 98888888653
No 211
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.00 E-value=0.00017 Score=82.34 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=134.1
Q ss_pred cccchhhHHHHhcccCCCCCCCCccccccCcEEEccCCCCC--CCCC----CCCCCcccEEEccCCcCCcccChhH----
Q 000202 1348 RLFIPEAYQFLLGARAGLTEPPSEEEWTHAKMIFFMDNDLQ--TLPG----RPSCPNLLTLFLQRNCRLRVIPPSF---- 1417 (1866)
Q Consensus 1348 r~~l~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~--~l~~----~~~~~~L~~L~L~~~~~l~~~p~~~---- 1417 (1866)
+..+|+.+.++... ....++|+.++|++|.+. .++. +.+|..|+.|.|.+| .++...-..
T Consensus 74 ~~Ei~e~L~~l~~a---------L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~a 143 (382)
T KOG1909|consen 74 KDEIPEALKMLSKA---------LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRA 143 (382)
T ss_pred HHHHHHHHHHHHHH---------HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHH
Confidence 34567766665443 223457899999999886 2333 357999999999866 454432222
Q ss_pred ---------HhcCCCCcEEEccCCCCCCCC-----hhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEccCC
Q 000202 1418 ---------FELMTSLKVLNLSKTRIKSLP-----ETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGT 1479 (1866)
Q Consensus 1418 ---------~~~l~~L~~L~Ls~~~i~~lp-----~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~ 1479 (1866)
.+.-+.||++...+|++..-+ ..+...+.|+.+.+..|.+-.. +-..+..+++|+.|||+.|
T Consensus 144 l~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 144 LFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred HHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence 134578999999999987554 4566778999999998875321 2235678999999999999
Q ss_pred CCC-----cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccc
Q 000202 1480 EIK-----MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEV 1554 (1866)
Q Consensus 1480 ~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l 1554 (1866)
-++ .+-..+..+++|+.|++++|---. .....+ ..-.-...++|+.|.+.+|.... ....++...+
T Consensus 224 tft~egs~~LakaL~s~~~L~El~l~dcll~~-~Ga~a~-----~~al~~~~p~L~vl~l~gNeIt~---da~~~la~~~ 294 (382)
T KOG1909|consen 224 TFTLEGSVALAKALSSWPHLRELNLGDCLLEN-EGAIAF-----VDALKESAPSLEVLELAGNEITR---DAALALAACM 294 (382)
T ss_pred hhhhHHHHHHHHHhcccchheeeccccccccc-ccHHHH-----HHHHhccCCCCceeccCcchhHH---HHHHHHHHHH
Confidence 877 344557788899999998874211 110000 00012236788888887654331 1112233344
Q ss_pred cCCCCCCEEEeecCCc
Q 000202 1555 SGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1555 ~~l~~L~~L~l~~~~l 1570 (1866)
...+.|.+|+++.|.+
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 5588999999999987
No 212
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.012 Score=70.50 Aligned_cols=243 Identities=14% Similarity=0.112 Sum_probs=130.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc---------------cccceEEEEeecccc
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR---------------HFEGSYFACNVRAAE 250 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 250 (1866)
.+++|-+...+.+...+..+. -.....++|..|+||+++|.++++.+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 468899999999999987642 2467899999999999999999985422 23333444321000
Q ss_pred ccccHHHHHHHHHHHHh-ccccccCccchhHHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 251 ETGRLDDLRKELLSKLL-NDRNVKNFQNISVNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 251 ~~~~~~~l~~~ll~~~~-~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..... -........ .......+.-.....+.+.+ .+++-++|+|+++. ....++++..+...+ .+.+|
T Consensus 82 ~g~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000 000000000 00000001000112232332 34567889999974 556667777666545 45666
Q ss_pred EEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHH
Q 000202 323 ITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEE 400 (1866)
Q Consensus 323 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~ 400 (1866)
++|.+. .++... .....+++.+++.++..+.+....... .. ......++..++|.|.....+-.... +.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~~---~~~~~~l~~~a~Gs~~~al~~l~~~~----~~ 228 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--IL---NINFPELLALAQGSPGAAIANIEQLQ----SI 228 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--cc---hhHHHHHHHHcCCCHHHHHHHHHHHH----HH
Confidence 555444 333322 235789999999999999998764211 11 11135788999999965443222111 10
Q ss_pred HHHHHHHhccCCCchhhhhhhcc--cC-CCCh-hhHHHHHHHHHHhHH
Q 000202 401 WESAMRKLEIVPHMEIQEVLKIS--YD-SLDD-SQKRMHDLLRAMGRE 444 (1866)
Q Consensus 401 w~~~l~~l~~~~~~~i~~~l~~S--y~-~L~~-~~k~~~~~l~~~~~~ 444 (1866)
-...+..+...+ .+...++.++ +. .++. .++.+++|++.+-++
T Consensus 229 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~ 275 (314)
T PRK07399 229 PPELLQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ 275 (314)
T ss_pred HHHHHHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 112222232222 2344444443 22 4554 345888899866555
No 213
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0048 Score=76.95 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=102.4
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEE-EecCCCCHHHHHHHHHHHh
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWV-TVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~i~~~l 1054 (1866)
+.+++|.+.-++.+.+++...+++ .+-++|+.|+||||+|+.+.+.-.-........|. .+..++..-...+.+....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 345667777777777777766665 47799999999999999985422111101000000 0011111111222221111
Q ss_pred ccC-----CCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1055 SLH-----CKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1055 ~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
..+ .......+++.+ +.+.+ .+.+-++|+|++... ..++.+...+......+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 000 001111222222 22222 345668899999753 45666666555444566666555 33333322
Q ss_pred CC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1122 MD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1122 ~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.. ....+++++++.++..+.+...+..... .--.+.+..|++.++|.+--+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 11 1246889999999988877766532111 112345677899999977533
No 214
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0075 Score=76.95 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=99.6
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc-------------------cccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK-------------------VMFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv 1035 (1866)
.+.+++|.+.-++.+.+++...+.. .+-++|+.|+||||+|+.+...-.-. +.|..++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3445677777888888888766655 46799999999999999885421111 111122222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
..+....+.++ +++++.+.. .-..++.-++|+|++.. ....+.+...+.......++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 22222222221 122221111 01235667889999986 345555555554434456666655
Q ss_pred CCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1114 REL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1114 R~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.+. .+.... .-...+++++++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDA 217 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHH
Confidence 443 332111 1125688999998887766655543221111 1233556888888877433
No 215
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.99 E-value=0.011 Score=68.17 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCceeehh---hHHHHHHhhhcCC-CCcEEEEEEecCCCchhHHHHHHHHhhhccccc------eEEEEeeccccccccH
Q 000202 186 KDLIGVEW---RIKEIESLLRTGS-AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG------SYFACNVRAAEETGRL 255 (1866)
Q Consensus 186 ~~~vGr~~---~l~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~ 255 (1866)
+.+||-.. .++.|+++|.... ....-+.|+|.+|+|||++++++.+.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 34566433 4566777776543 234558999999999999999999866555532 12222 2234555
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCCCH-----HHHHHHhhc---cCCCCCCCEEEEEcc
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVNHP-----RQIELLIGR---LDRFASGSQVIITTR 326 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~-----~~~~~l~~~---~~~~~~gs~IiiTTR 326 (1866)
..+...++..+..................+.++. +-=+||+|.+.+. .+-..++.. +.+-..=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 7888888888876553222111112334455554 4458899999762 122222222 222222345666665
Q ss_pred ccchhccC-----ccceeeecCCCCHHHHH-HHHHhhc--C--CCCCCChhHHHHHHHHHHHhCCCc
Q 000202 327 DKQVLTNC-----EVDHIYQMKELVHADAH-KLFTQCA--F--RGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 327 ~~~v~~~~-----~~~~~~~l~~L~~~ea~-~Lf~~~a--~--~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
+.--+-.. +...++.++....++-+ .|+.... + +... .-...+++..|...++|+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCch
Confidence 44222111 11345677776666544 3332211 1 1111 1234678899999999964
No 216
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0091 Score=73.49 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=58.3
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++-++++|++..- ...+.+...+.....+..+|++|.+. .+.... .-...+.+++++.++..+.+.+..+. .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C
Confidence 45568888999853 33444544444334456666666553 333221 12368999999999998888754321 1
Q ss_pred chHHHHHHHHHHHcCCChHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+.+..++..++|.|.....
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARR 212 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHH
Confidence 34467789999999965443
No 217
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.98 E-value=0.014 Score=79.16 Aligned_cols=302 Identities=13% Similarity=0.165 Sum_probs=162.3
Q ss_pred chhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEE---EEEecCCC---CHHHHHHHHH
Q 000202 981 NYTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVII---WVTVSRYW---NTRKIQKQVL 1051 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~---wv~vs~~~---~~~~~~~~i~ 1051 (1866)
.||+.+++.+...+ ......++.+.|..|+|||+|++.|. ..+.+.+...+ +-...+.. ......++++
T Consensus 3 ~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~--~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 3 YGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVH--KPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHH--HHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 46777888887777 34556699999999999999999994 33333222111 11122221 2334445555
Q ss_pred HHhccCCC--------------------------------C---------ccCHHH-----HHHHHHHHh-CCCcEEEEE
Q 000202 1052 RQLSLHCK--------------------------------D---------RETDAQ-----VAEKLWQVL-NGEKFLLLL 1084 (1866)
Q Consensus 1052 ~~l~~~~~--------------------------------~---------~~~~~~-----~~~~l~~~L-~~kr~LlVl 1084 (1866)
.++..... . ...... ....+.... +.++..+|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 54421110 0 000011 112222233 456999999
Q ss_pred eCCCC--ccchh---hhcCCCCC-CCCCcEEEEc--cCCh--hhhccCCCCcEEEecCCChHHHHHHHHHHhcCCCCCch
Q 000202 1085 DDVWE--QIDLE---AVGIPVPG-SENGSKIFMA--SREL--DVCRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPD 1154 (1866)
Q Consensus 1085 Ddv~~--~~~~~---~l~~~l~~-~~~gs~IivT--TR~~--~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 1154 (1866)
||+.- ...++ .+...... ......|..+ .+.. .+-........+.|+||+..+.-.|.....+.... .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--L 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--c
Confidence 99952 11122 22111110 0001122222 2221 11222233468999999999999999887765322 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhCC------CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhH
Q 000202 1155 IHLYARAIVKGCCGLPLLTIVTAKALAGE------RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKS 1228 (1866)
Q Consensus 1155 ~~~~~~~I~~~c~GlPLAi~~~g~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~ 1228 (1866)
..+....|.+|-.|.|+-+.-+-..+... .+...|+.-...... ....+.+...+..-.+.||+. .++
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~-t~~ 312 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGT-TRE 312 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHH-HHH
Confidence 34557779999999999999988888752 233334332222111 111233566688889999987 788
Q ss_pred HHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhhhhhccc-----c-cC---cccchhHHHHH
Q 000202 1229 CFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDASLLLINE-----V-HN---SIRMPGLMKDL 1299 (1866)
Q Consensus 1229 cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~-----~-~~---~~~mhdlv~dl 1299 (1866)
..-..|++-.. |+..-|--.+-. .....+....+.|....++..++ . .. .--.|+.+++.
T Consensus 313 Vl~~AA~iG~~--F~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 313 VLKAAACIGNR--FDLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHhCcc--CCHHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 88888887543 334433332211 12344555555555554443221 0 11 11468888887
Q ss_pred HHHH
Q 000202 1300 AFGI 1303 (1866)
Q Consensus 1300 a~~i 1303 (1866)
|...
T Consensus 382 aY~~ 385 (849)
T COG3899 382 AYNL 385 (849)
T ss_pred Hhcc
Confidence 7543
No 218
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.0039 Score=78.53 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=98.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++.+.-.....-..+++++ ..++...+...+.... ...+.+++.++. .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhcc-C
Confidence 4588999999999999999966322211112334444 3456677666654210 112334444443 3
Q ss_pred EEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+||+||+... ..+ +.+...+.. ...|..||+|+... .+..++....++.+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 47889999753 222 222221111 12455688886543 22334445568899999999999999988
Q ss_pred hcCCCC-CchHHHHHHHHHHHcCCChHHHHHHHHH
Q 000202 1146 VGGIIQ-SPDIHLYARAIVKGCCGLPLLTIVTAKA 1179 (1866)
Q Consensus 1146 ~~~~~~-~~~~~~~~~~I~~~c~GlPLAi~~~g~~ 1179 (1866)
+..... ..--++...-|+..++|.|-.+.-+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 753211 1122456778999999999776655443
No 219
>CHL00176 ftsH cell division protein; Validated
Probab=96.97 E-value=0.0049 Score=80.33 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+...+++.+.+. . +....+-|.++|.+|+|||+||++++...... |+.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is~s------ 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSISGS------ 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeeccHH------
Confidence 3568888887777666543 1 11224568999999999999999999865322 2221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 316 (1866)
.+.... .+. ........+.+.....+++|+||+++.. ..+..++..+..+ .
T Consensus 251 --~f~~~~----~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 --EFVEMF----VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred --HHHHHh----hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 011100 000 0001112334445667899999999632 1234444333322 2
Q ss_pred CCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcC
Q 000202 317 SGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
.+..||.||.....+.. ...+..+.++..+.++-.++++.++-
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 35566777765443321 12246788999999999999987763
No 220
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.0034 Score=73.49 Aligned_cols=101 Identities=24% Similarity=0.332 Sum_probs=55.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
..+.++|.+|+|||.||.++++.+..+...++|+. ...++..+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhcC
Confidence 45889999999999999999998766533344443 1223333332221111 1112223344554
Q ss_pred CcEEEEEecCC--CHHH--HHHHhhccC-CCCCCCEEEEEccc
Q 000202 290 KKVLIVFDDVN--HPRQ--IELLIGRLD-RFASGSQVIITTRD 327 (1866)
Q Consensus 290 k~~LlVlDdv~--~~~~--~~~l~~~~~-~~~~gs~IiiTTR~ 327 (1866)
-. ||||||+. .... .+.+...+. ....|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 89999993 2222 222222222 12356679999964
No 221
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0071 Score=77.69 Aligned_cols=180 Identities=10% Similarity=0.072 Sum_probs=98.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccccc-------------------ccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKV-------------------MFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~-------------------~F~~~~wv 1035 (1866)
.+..++|.+..++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-.. .|-..+.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 3445677777888888888766644 578999999999999998854211110 01111112
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCcc--chhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQI--DLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IivT 1112 (1866)
.......+. +..++...+.. -..+++-++|+|++.... ..+.+...+.......++|++
T Consensus 94 daAs~~gVd------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DAASNTGID------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred eccccCCHH------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 111111111 11111111110 123566789999997632 244444444322344566666
Q ss_pred cCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1113 SRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1113 TR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
|.+.. +.... +-...++++.++.++....+.+.+......- -......|++.++|.+.-+.
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHH
Confidence 65432 22111 1125678889999998888877664322111 13356778899999875433
No 222
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.95 E-value=0.0048 Score=64.12 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHhhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|.|+|.+|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 223
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.02 Score=68.15 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=63.7
Q ss_pred cCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++. ....++++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 4556889999984 556777777777667788888877754 333322 235678999999999998887532 1
Q ss_pred ChhHHHHHHHHHHHhCCCcceee
Q 000202 365 DAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
+ .+.+..++..++|.|+...
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHH
Confidence 1 2236678999999998554
No 224
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=6.3e-05 Score=83.17 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=77.6
Q ss_pred cccccCCcEEEecccCCccEeccCCCccccccccccccccccccc-ccccccccccccccccccEEeEecCccCccccch
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWD-LTCIWQGILPEGSFAELRILSIHACRHLEYVFTC 1736 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~ 1736 (1866)
+.+|+.|..|+|+-|.-.+...... ....=++|..|+++++.. +...-. ..-...+|+|.+|++++|-.|+.- -.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~-~~ 331 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKND-CF 331 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCch-HH
Confidence 3557788888888886555443221 222347888899988733 221000 011236899999999999988862 22
Q ss_pred hhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1737 SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1737 ~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
..+.+++.|++|.++.|+.+. ... .-.+...|+|.+|++.+|-
T Consensus 332 ~~~~kf~~L~~lSlsRCY~i~---p~~---~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCYDII---PET---LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhcchheeeehhhhcCCC---hHH---eeeeccCcceEEEEecccc
Confidence 456679999999999998762 111 1123467999999999875
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.94 E-value=0.016 Score=67.05 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred HHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHHHHHHHHhccCC
Q 000202 986 NVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 986 ~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 1058 (1866)
-++++-+.+ ...+.+-+.|+|-.|.|||++++.+...+..... --.++.|..+..++...+...|+.+++...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 344444444 3455667999999999999999998753322111 114667788888999999999999999887
Q ss_pred CCccCHHHHHHHHHHHhCC-CcEEEEEeCCCCcc---------chhhhcCCCCCCCCCcEEEEccCChhhhccCCC----
Q 000202 1059 KDRETDAQVAEKLWQVLNG-EKFLLLLDDVWEQI---------DLEAVGIPVPGSENGSKIFMASRELDVCRNMDV---- 1124 (1866)
Q Consensus 1059 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~---- 1124 (1866)
..............+.|+. +-=+||+|.+.+.- ..+.++ .+.+.-.=+-|.|-|++.--+-..+.
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 6666666666666666654 34588899997621 122221 12121223445555554332222111
Q ss_pred -CcEEEecCCChHH-HHHHHHHHhc--C--CCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1125 -NMVVKLETLSMKD-AWELFCKEVG--G--IIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1125 -~~~~~l~~L~~~~-a~~Lf~~~~~--~--~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
...+.+.....++ ...|+..-.. . ....-...++++.|...++|+.=-+
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 1345555555444 3344332111 1 1112234678999999999987443
No 226
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.0014 Score=69.38 Aligned_cols=104 Identities=34% Similarity=0.427 Sum_probs=62.5
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+...+++.+|++..++.+..+++|.+|.|.+| .+..+.+.+-..+++|..|.|.+|+|.++-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---------------- 105 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGD---------------- 105 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhh----------------
Confidence 34567788888877777777777777777755 5666666665556667777777776654431
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceeccccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 1502 (1866)
+ .-+..++.|++|.+-+|.++.-+. -+.++++|+.|+...+
T Consensus 106 -----l-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 106 -----L-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -----c-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 0 112334455555555555443322 2556666666666543
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.003 Score=72.60 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=85.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|||..|+|||.|++++++....+ -..++|++..+ +... ...+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhhCC
Confidence 568899999999999999996532211 13456666432 2111 011223333222
Q ss_pred EEEEEeCCCC---ccchhh-hcCCCCC-CCCCcEEEEccCChhh---------hccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWE---QIDLEA-VGIPVPG-SENGSKIFMASRELDV---------CRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~---~~~~~~-l~~~l~~-~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
+||+||+.. ...|+. +...+.. ...|..||+|++...- ..++....++++++++.++-.+.+.++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 678999963 234543 2222211 1346778888775332 222233468899999999999998865
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
+....- .--++...-|++.+.|..-++..+
T Consensus 179 a~~~~~-~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRGL-HLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 533211 111345566777777765444433
No 228
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.0093 Score=72.37 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=103.1
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc--cccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK--VMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
..++|.++....+...+...+.. .+.|+|..|+||||+|..+.+.---. ..+... ....++......+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 34567777777788877666544 58899999999999999885421110 001110 0011111122333332221
Q ss_pred ccC---------C-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEE-Ec
Q 000202 1055 SLH---------C-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIF-MA 1112 (1866)
Q Consensus 1055 ~~~---------~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vT 1112 (1866)
..+ . ......+++ ..+.+++ .+++-++|+|++..- ...+.+...+.....+..+| +|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 100 0 001112322 2344443 356678999999853 33444444333222344444 44
Q ss_pred cCChhhhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRELDVCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
++-..+..... -...+++.+++.++..+.+.+...... - ..+....|++.++|.|.....+
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~-~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S-DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 44333322211 136899999999999999987432211 1 1334667899999999765543
No 229
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.88 E-value=0.0066 Score=68.89 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||.|.+++++.-.....=..+++++ ..++.+.+...+... . ...+++.+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~~~ 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-----E----IEEFKDRLRS 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHHCT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-----c----chhhhhhhhc
Confidence 345688999999999999999976433221112345554 455666666655431 1 2345555654
Q ss_pred CcEEEEEeCCCCc---cchhhhc-CCCC-CCCCCcEEEEccCChhh---------hccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDLEAVG-IPVP-GSENGSKIFMASRELDV---------CRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~~~l~-~~l~-~~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
-. +|++||++.. ..|+... ..+. ....|.+||+|++...- ...+....++++++++.++..+++.
T Consensus 98 ~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 98 AD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp SS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred CC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 43 6779999753 2232211 1111 01356789999865422 2223345689999999999999998
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+.+....-. --++++.-|++.+.+..-
T Consensus 177 ~~a~~~~~~-l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 177 KKAKERGIE-LPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHHHTT---S-HHHHHHHHHHTTSSHH
T ss_pred HHHHHhCCC-CcHHHHHHHHHhhcCCHH
Confidence 877432111 123344555555555443
No 230
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.87 E-value=0.0079 Score=77.55 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=92.3
Q ss_pred cCCCceeehhhHHHHHHhhh---c-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLR---T-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+...+++.+.+. . +....+-+.++|++|+|||+||++++......| +.....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~~~----- 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGS----- 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eeccHH-----
Confidence 34578888877766655443 1 122345588999999999999999998653322 211110
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 315 (1866)
.+. ....+.. .......+.......+.+|+||+++.. ..+..++..+..+
T Consensus 123 ---~~~----~~~~g~~-----~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 123 ---DFV----EMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred ---HHH----HHHhccc-----HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 1111100 001112233333456789999999642 1223333333322
Q ss_pred CCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 316 ASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
..+-.||.||.....+. ....+..++++..+.++-.++|..+.-+..... ......+++.+.|
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G 258 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPG 258 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCC
Confidence 22445566665543221 112356788999999999999987663322111 1123456666665
No 231
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.015 Score=75.04 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=102.7
Q ss_pred cccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCccccc--ccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKV--MFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.+++|.+.-++.+.+++...+. ..+-++|..|+||||+|+.+.+.-.-.. ..... ...+++.-...+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~----~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI----TATPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC----CCCCCCccHHHHHHHc
Confidence 344567777777778888876665 4568999999999999999843211000 00000 0011222222222211
Q ss_pred HhccC-----CCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhc
Q 000202 1053 QLSLH-----CKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCR 1120 (1866)
Q Consensus 1053 ~l~~~-----~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~ 1120 (1866)
.-..+ .......+++.+.+.. -..++.-++|||+++. ...++.+...+.......++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 0011112222221111 1134556889999986 34566666655544445566655543 33322
Q ss_pred c-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1121 N-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1121 ~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
. ..-...++++.++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 2 11236899999999999888887664322111 1334667888898877443
No 232
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.021 Score=69.20 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=88.4
Q ss_pred Ccee-ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc---------------------ccceEEEE
Q 000202 187 DLIG-VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH---------------------FEGSYFAC 244 (1866)
Q Consensus 187 ~~vG-r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~ 244 (1866)
.++| -+..++.+...+..+. -.+...++|..|+||||+|..+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 4566 5566677777776432 35567899999999999999998864321 11111111
Q ss_pred eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 245 NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 245 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
..+. .-. .+-.+++...+.. .-..+.+=++|+|+++. .+..+.++..+....+++.+|
T Consensus 85 ~~~~---~i~-id~ir~l~~~~~~----------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQ---SIK-KDQIRYLKEEFSK----------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cccc---cCC-HHHHHHHHHHHhh----------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 0000 000 0000011100000 00223455788999974 556777887777767788888
Q ss_pred EEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhh
Q 000202 323 ITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 323 iTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
++|.+.. +.... ....++++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 8887643 33222 23578999999999998888653
No 233
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.84 E-value=0.019 Score=71.30 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=101.7
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc--ccc------------------ccceEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE--VKV------------------MFHVIIWV 1035 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~--~~~------------------~F~~~~wv 1035 (1866)
+..++|.++.++.+.+.+...+.+ .+-++|..|+||||+|+.+...-. ... +++. .++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 334667778888888888665544 577899999999999988853211 000 1221 222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS 1113 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT 1113 (1866)
.-....... -.+++...+.. .-..+++-++|+|++... ...+.+...+........+|++|
T Consensus 92 ~~~~~~~~~-~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 92 DAASNNGVD-DIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred eccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 211111111 11122221110 012345558889998653 34555555554333456666666
Q ss_pred CChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1114 RELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1114 R~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
.+.. +.... .....+++++++.++..+.+...+......- -.+.+..+++.++|.|..+....
T Consensus 155 ~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 155 TEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 5543 22211 1225788899999998888877654321111 13556778899999886555443
No 234
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.015 Score=73.00 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=100.5
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCc---cc----------------ccccceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYP---EV----------------KVMFHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~---~~----------------~~~F~~~~wv~ 1036 (1866)
+.+++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+...- .- .+.+..++.++
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 345667666677777777666654 68899999999999998885311 00 00111222333
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+...++.++ ++|.+.... .-..+++-++|+|++... ...+.+...+.......++|++|.
T Consensus 92 aas~~~vddI-R~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 92 AASNTSVDDI-KVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred cccCCCHHHH-HHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 3222222221 112111110 012355668999999753 345566555544445666666554
Q ss_pred C-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1115 E-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1115 ~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+ ..+.... .-...+++++++.++..+.+.+.+......- -++....|++.++|.+-.
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRN 213 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 3 3443221 1236789999999999888887664322111 133456788899887743
No 235
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.017 Score=70.58 Aligned_cols=193 Identities=11% Similarity=-0.018 Sum_probs=103.0
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccccc--ccce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKV--MFHV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
..++|.++.++.+.+.+...+.. .+-++|+.|+||+|+|..+.+.---.. .... ..-.........-...+.+...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 34667777777888888776655 588999999999999988744211000 0000 0000000000001111222111
Q ss_pred hccC---------C-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEc
Q 000202 1054 LSLH---------C-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1054 l~~~---------~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
-..+ . ...-..++ +..+.+.+ .+.+-++|+||+.. ....+.+...+..-..++.+|++
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~ 177 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLV 177 (365)
T ss_pred CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1000 0 00111222 23333443 25567899999975 33445554444333345667777
Q ss_pred cCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
|.+.+ +.... .-...+.+.+++.++..+++.+...... ......+++.++|.|+.+..+
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 66653 32221 1236889999999999999987643211 111256899999999765443
No 236
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.80 E-value=0.007 Score=82.87 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=48.5
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+.+...++..+.. +...+.+|||+.++..+...|.... ..-+.++|.+|+|||+||..+++++...
T Consensus 155 ~l~~~~~~l~~~~~---~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 155 ALEKYARDLTERAR---EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred HHHHHhhhHHHHhh---CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 44444444444332 2344679999999999999987543 2345689999999999999999987553
No 237
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0045 Score=82.13 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=46.6
Q ss_pred hhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 165 LVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+.+...++...-.. ...++++||+.++.++.+.|..... .-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a~~---g~~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLARV---GGIDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHHc---CCCCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 455555554433222 2235799999999999998886432 2356899999999999999998653
No 238
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.032 Score=66.39 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=70.2
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +....++++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 345578899998 4567778887777767788888777665 344332 2356889999999999998875421
Q ss_pred ChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHh
Q 000202 365 DAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l 408 (1866)
. .+..+++.++|.|+....+ +.....+.++..+..+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 1 1346789999999865433 3333344444444433
No 239
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.78 E-value=4.5e-05 Score=93.57 Aligned_cols=123 Identities=25% Similarity=0.254 Sum_probs=80.4
Q ss_pred ccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
.|..|.+.++++|.+..+.. +.-++.|+.|+|++|.. ..+. .+..+++|++|||++|.+..+|. +...+ +|+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hhhH--HHHhcccccccccccchhccccccchhhh-hheee
Confidence 35666677777777765542 33456788888888743 2322 34667888888888888887773 22233 38888
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceecccc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~ 1501 (1866)
.|++|.. ..+ ..+.+|.+|+.||++.|-|.... .-++.|..|+.|.+.+
T Consensus 238 ~lrnN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 238 NLRNNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred eecccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 8888874 333 36778888888888888665332 1256666777777654
No 240
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0063 Score=77.42 Aligned_cols=187 Identities=9% Similarity=-0.029 Sum_probs=97.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|++..++.+.+++...+.+ .+-++|+.|+||||+|+.+.+.-.-.. |... .+++.-...+.+.....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 445677777788888888655444 678999999999999999854211100 1110 11111122222211111
Q ss_pred cC-----CCCccCHH---HHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhcc-C
Q 000202 1056 LH-----CKDRETDA---QVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRN-M 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~---~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~-~ 1122 (1866)
.+ .......+ ++...+.. -..+++-++|+|++.. ...++.+...+........+|++| ....+... .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 00 00001111 11111111 0123344699999875 344565555443333345555444 43333221 1
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.....+++.+++.++....+.+.+......- -.+.+..+++.++|.+-
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR 215 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHH
Confidence 1235789999999999888877653221111 13346678889999664
No 241
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.04 Score=66.00 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
..||+.++..+.+++ .....+.+-|.|-+|.|||.+...++.+..-...=-.++++.+..-.....+...|...+-
T Consensus 152 l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~ 231 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLL 231 (529)
T ss_pred ccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHH
Confidence 567788888777777 3345667899999999999999988654322211124466665544566777777777774
Q ss_pred cCCCCccCHHHHHHHHHHHhCCC--cEEEEEeCCCCcc--chhhhcCC--CCCCCCCcEEEEc--cCChhh----hcc--
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGE--KFLLLLDDVWEQI--DLEAVGIP--VPGSENGSKIFMA--SRELDV----CRN-- 1121 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~--~~~~l~~~--l~~~~~gs~IivT--TR~~~v----~~~-- 1121 (1866)
..........+..+.+.++..+. -+|+|+|.++... .-..+... |+. -++|++|+. ...-+. ...
T Consensus 232 q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 232 QDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHHhhhhh
Confidence 43333344466667777777654 4899999986411 11111111 222 245665543 111111 111
Q ss_pred ---CCCCcEEEecCCChHHHHHHHHHHhcCCCCC----chHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1122 ---MDVNMVVKLETLSMKDAWELFCKEVGGIIQS----PDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1122 ---~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~----~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
.........++-+.++-.++|..+....... +.++-.|++++.--|-+=.|+.+.-+++
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1224678889999999999999887554332 2344455555555555556665555444
No 242
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.014 Score=75.06 Aligned_cols=177 Identities=11% Similarity=0.067 Sum_probs=97.5
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccc-------------------cccceEEEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVK-------------------VMFHVIIWVT 1036 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~ 1036 (1866)
+..++|.+.-++.+.+++...+.. .+-++|..|+||||+|+.+...-.-. +.|...+++.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 345667777777788888766654 46799999999999999985321110 0111122222
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccC
Q 000202 1037 VSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASR 1114 (1866)
Q Consensus 1037 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR 1114 (1866)
.+....+.. .++++..+.. .-..+++-++|+|++... ...+.+...+........+|++|.
T Consensus 95 ~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 95 AASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred ccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 111111111 1122211110 012356678999999853 335555555544334566666554
Q ss_pred Ch-hhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1115 EL-DVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1115 ~~-~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+. .+.... .-...+++++++.++..+.+.+.+....... -......|++.++|.+-
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~-~~~al~~la~~s~Gslr 215 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF-DATALQLLARAAAGSMR 215 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 43 332111 1125788999999998887776653221111 12345678888999774
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.74 E-value=0.0071 Score=69.60 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.|+|..|+|||+||+.+++.... ... ...+++..... .. + ....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~~-~~~~i~~~~~~------~~----~------------------~~~~- 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY-GGR-NARYLDAASPL------LA----F------------------DFDP- 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CCC-cEEEEehHHhH------HH----H------------------hhcc-
Confidence 3457889999999999999999663211 111 23344433210 00 0 1112
Q ss_pred CcEEEEEeCCCCccch--hhhcCCCCC-CCCCc-EEEEccCChhhhc--------cCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQIDL--EAVGIPVPG-SENGS-KIFMASRELDVCR--------NMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~~--~~l~~~l~~-~~~gs-~IivTTR~~~v~~--------~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
..-+||+||+.....+ +.+...+.. ...|. .||+|++...... .+.....+++.+|++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2337889999753221 222222211 12344 3666666433221 2222368899999998877766654
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
+.... ..--++....+++.+.|.+..+..+-..|.
T Consensus 170 ~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 170 AAERG-LQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 32211 111234566677888999888776666553
No 244
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.73 E-value=0.0032 Score=72.41 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=57.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc---Cccchh--H----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK---NFQNIS--V---- 280 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~~~--~---- 280 (1866)
+.++|.|-+|+||||||..+++.++.+|+..+++...++ ......++.+++...-....... ..+... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999999888888888877766 33334555555543211111000 000000 0
Q ss_pred ---HHHHHHh--h-cCcEEEEEecCCC
Q 000202 281 ---NFQSKRL--A-RKKVLIVFDDVNH 301 (1866)
Q Consensus 281 ---~~l~~~L--~-~k~~LlVlDdv~~ 301 (1866)
-.+.+++ + ++++|+|+||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1233444 3 8899999999964
No 245
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0045 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.251 Sum_probs=27.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+.|+|.+|+||||+|+.++..........+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46899999999999999999997766543344443
No 246
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.027 Score=68.03 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=63.1
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +.+..+.++..+..-.+++.+|++|.+.+ ++... .....+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~--~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--T--M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--C--C
Confidence 456688999998 45677788887777677888888777653 44332 224578999999999988886542 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCcc
Q 000202 365 DAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPL 384 (1866)
+ .+.+..++..++|.|.
T Consensus 183 ~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 183 S---QDALLAALRLSAGAPG 199 (334)
T ss_pred C---HHHHHHHHHHcCCCHH
Confidence 1 2336778999999995
No 247
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.016 Score=71.93 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=96.9
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV 272 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 272 (1866)
.-+.++.+.+.... .++.|.|+-++||||+++.+.....+. .+++..... ......+ .+.....
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~---~~~~~~l-~d~~~~~------ 87 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDL---RLDRIEL-LDLLRAY------ 87 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecch---hcchhhH-HHHHHHH------
Confidence 34444555544322 289999999999999997666655443 344432111 0000111 1111111
Q ss_pred cCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccC------ccceeeecCCCC
Q 000202 273 KNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNC------EVDHIYQMKELV 346 (1866)
Q Consensus 273 ~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~ 346 (1866)
...... ++.+|+||.|.....|+.....+-+.++. +|+||+-+....... |....+++-||+
T Consensus 88 ----------~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 ----------IELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ----------HHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111111 78899999999999999888887776766 899998776554321 445678999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeec
Q 000202 347 HADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLG 390 (1866)
Q Consensus 347 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g 390 (1866)
..|-..+-...+ ... .. +..-+-.-..||.|-++..-.
T Consensus 156 F~Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKADL 193 (398)
T ss_pred HHHHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCcc
Confidence 999876543111 001 11 112223345799998876543
No 248
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.68 E-value=0.008 Score=69.91 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=97.2
Q ss_pred cchhhHHHHHHHHHhccCC---ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 980 VNYTQRNVRKIFRYVNDVT---ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
+.+|+.++..+...+.+.. .+.|-|+|..|.|||.+.+++++.... ..+|+++-+.++.+.+...|+.++..
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~ 82 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQL 82 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhcc
Confidence 4467778887777774433 234578999999999999999775532 35899999999999999999999952
Q ss_pred CCCCc-------cCHHHHHHHHHH--HhC--CCcEEEEEeCCCCccchhhhcCC----CC--CCCCCcEEEEccCC--hh
Q 000202 1057 HCKDR-------ETDAQVAEKLWQ--VLN--GEKFLLLLDDVWEQIDLEAVGIP----VP--GSENGSKIFMASRE--LD 1117 (1866)
Q Consensus 1057 ~~~~~-------~~~~~~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~l~~~----l~--~~~~gs~IivTTR~--~~ 1117 (1866)
...+. .+..+.+..+.+ ... ++.++||||+++...+.+.+.-+ +. -..+.. +|+++-- +.
T Consensus 83 ~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~ 161 (438)
T KOG2543|consen 83 ADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEK 161 (438)
T ss_pred CCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccHH
Confidence 22111 112233333444 222 46899999999875554432111 00 011222 3333221 11
Q ss_pred h-hccCCC--CcEEEecCCChHHHHHHHHH
Q 000202 1118 V-CRNMDV--NMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1118 v-~~~~~~--~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
. ...++. ..++....-+.++-..++.+
T Consensus 162 ~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 162 QYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 1 222333 23556777788888888765
No 249
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.0007 Score=75.22 Aligned_cols=80 Identities=28% Similarity=0.297 Sum_probs=47.0
Q ss_pred HHhcCCCCcEEEccCCCCCCCC---hhhcCCCCCcEEecccccCc---ccCCccccCCCCCcEEEccCCCCC--cCChhh
Q 000202 1417 FFELMTSLKVLNLSKTRIKSLP---ETLVNLKCLQILILRDCDFL---FVLPPEVGSLECLEVLDLRGTEIK--MLPKEI 1488 (1866)
Q Consensus 1417 ~~~~l~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~---~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i 1488 (1866)
+-....+++.|||.+|.|+... .-+.+|++|++|+|+.|++. +.+| ..+.+|++|-|.|+.+. .....+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 3345677888888888776433 33456777777777777643 2222 23457777777777543 333334
Q ss_pred cCCCccceecc
Q 000202 1489 GKLTSLRYLTV 1499 (1866)
Q Consensus 1489 ~~L~~L~~L~l 1499 (1866)
..++.++.|++
T Consensus 143 ~~lP~vtelHm 153 (418)
T KOG2982|consen 143 DDLPKVTELHM 153 (418)
T ss_pred hcchhhhhhhh
Confidence 44555555544
No 250
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.022 Score=73.10 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
.+++|.+..++.+.+.+...+ ...+-++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhcCCCC
Confidence 345566666666666676554 35677899999999999999854322111000 0111111222222111100
Q ss_pred CC-----CCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccC-
Q 000202 1057 HC-----KDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM- 1122 (1866)
Q Consensus 1057 ~~-----~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~- 1122 (1866)
+. ......+++ ..+.+. ..+++-+||+|++... ...+.|...+........+|++|.+ ..+....
T Consensus 89 Dv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 89 DVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred ceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 00 000111111 112211 2456678999999753 4456665555432334556665554 3333221
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVTAKAL 1180 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~g~~L 1180 (1866)
.-...+++++++.++....+.+.+...... --.+.+..|++.++|.+ .|+..+...+
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 112578999999999988887755432111 11345667888899865 5666665544
No 251
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.60 E-value=0.012 Score=69.54 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcE
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKF 1080 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 1080 (1866)
-+.++|.+|+||||+|+.+.......+.....-++.++. .+ +...+... ........+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-----~~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-----TAPKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-----chHHHHHHHHHc---cCc
Confidence 477999999999999987754322222221112444442 12 22222111 111122222222 336
Q ss_pred EEEEeCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhccC--------CCCcEEEecCCChHHHHHH
Q 000202 1081 LLLLDDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCRNM--------DVNMVVKLETLSMKDAWEL 1141 (1866)
Q Consensus 1081 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~L 1141 (1866)
+|+||++... +.++.+...+.....+-+||+++.....-... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999621 12333444443334455666666543221111 1135789999999999888
Q ss_pred HHHHhc
Q 000202 1142 FCKEVG 1147 (1866)
Q Consensus 1142 f~~~~~ 1147 (1866)
+.+.+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 876553
No 252
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.024 Score=76.01 Aligned_cols=189 Identities=9% Similarity=-0.022 Sum_probs=100.7
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH--
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ-- 1053 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-- 1053 (1866)
+.+++|.+..++.|.+.+...++. .+.++|..|+||||+|+.+.+.-.-..... ..+++.-...+.|...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-------~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT-------STPCGECDSCVALAPGGP 86 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-------CCCCcccHHHHHHHcCCC
Confidence 445677777788888888766655 478999999999999999854221100000 0001111111111110
Q ss_pred -----hccCCCCccCHHHHH---HHHH-HHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhcc
Q 000202 1054 -----LSLHCKDRETDAQVA---EKLW-QVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRN 1121 (1866)
Q Consensus 1054 -----l~~~~~~~~~~~~~~---~~l~-~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~ 1121 (1866)
+..+.......+++. +.+. .-..++.-++|||++.. ...++.|...+..-...+.+|++|.+ ..+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 000000001112221 1111 11345566788999985 34556665555544445666655543 344332
Q ss_pred C-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1122 M-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1122 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
. .-...|++..++.++..+.+.+.+......- -......|++.++|.+..+
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 2 2236899999999998888876553221111 1234567889999987433
No 253
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.026 Score=73.14 Aligned_cols=196 Identities=10% Similarity=-0.005 Sum_probs=105.0
Q ss_pred CcccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHH
Q 000202 975 SNVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
..+.+++|.+..++.+.+.+...+.. .+-++|+.|+||||+|+.+.+.-.-..... ...+ .++..-.-.+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHh
Confidence 34456778888888888888766544 588999999999999999854321111000 0000 0111111112222
Q ss_pred HHhccCC-----CCccCHHH---HHHHHHH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhh
Q 000202 1052 RQLSLHC-----KDRETDAQ---VAEKLWQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVC 1119 (1866)
Q Consensus 1052 ~~l~~~~-----~~~~~~~~---~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~ 1119 (1866)
..-..+. ......++ +++.++. -..+++-++|+|++... ...+.+...+..-..++++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111100 01111222 2222111 12345567899999753 34555655554434456666555 333333
Q ss_pred ccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1120 RNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1120 ~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.... -...+++..++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2211 135789999999999888887664321111 124567789999998865443
No 254
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.58 E-value=0.015 Score=79.04 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---ccccc-cceEEE-EEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVM-FHVIIW-VTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~-F~~~~w-v~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++||++++.+++..|......-+.++|.+|+||||+|+.+.+.- .+... .+..+| +..+.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~-------------- 253 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL-------------- 253 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh--------------
Confidence 467899999999998866655667799999999999999985421 11111 123332 22221
Q ss_pred hccCCCCccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc-------chh---hhcCCCCCCCCC-cEEEEccCChhhhc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI-------DLE---AVGIPVPGSENG-SKIFMASRELDVCR 1120 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~g-s~IivTTR~~~v~~ 1120 (1866)
+..........+.....+.+.+ .+++.+|++|++.... .-+ .++..+ ..| -++|-||.......
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKK 330 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhh
Confidence 0000000111111112222222 2578999999987521 112 133222 233 34555555432211
Q ss_pred cC-------CCCcEEEecCCChHHHHHHHHHHh
Q 000202 1121 NM-------DVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1121 ~~-------~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.. .-..++.+++++.++..+++....
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 11 112589999999999999975433
No 255
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.58 E-value=0.021 Score=70.86 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
.-+.++.+.+..... ++.|.|+-++||||+++.+.. ..... .+++...+......-..+...
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~~l~d~~~------------ 85 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRIELLDLLR------------ 85 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchhhHHHHHH------------
Confidence 344445555544333 899999999999999977722 22111 455543322111111111111
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-----C-CCCcEEEecCCChHHH
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-----M-DVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-----~-~~~~~~~l~~L~~~~a 1138 (1866)
.+...-..++.+|+||.|....+|+.....+.+.++. +|++|+-+...... . +-...+.+-||+..|-
T Consensus 86 -----~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Ef 159 (398)
T COG1373 86 -----AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREF 159 (398)
T ss_pred -----HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHH
Confidence 1111112278899999999999999887777776665 88888877665322 1 2245789999999888
Q ss_pred HHHH
Q 000202 1139 WELF 1142 (1866)
Q Consensus 1139 ~~Lf 1142 (1866)
..+-
T Consensus 160 l~~~ 163 (398)
T COG1373 160 LKLK 163 (398)
T ss_pred Hhhc
Confidence 7653
No 256
>PRK08181 transposase; Validated
Probab=96.56 E-value=0.0076 Score=70.05 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=27.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++|.+|+|||.||.++++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34899999999999999999997665544455543
No 257
>PRK12377 putative replication protein; Provisional
Probab=96.56 E-value=0.0097 Score=68.28 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=28.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+.++|.+|+|||+||.++++.+....-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 356899999999999999999998776554455553
No 258
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.026 Score=73.30 Aligned_cols=195 Identities=10% Similarity=0.040 Sum_probs=99.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEE-ecCCCCHHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVT-VSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 1053 (1866)
.+.+++|.+..++.+.+.+...++. .+.++|+.|+||||+|+.+.+.-.-...++.-.|-. +..+++.-...+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3445667777777777777666554 478999999999999988854221111110000100 00111111222222111
Q ss_pred hccC-----CCCccCHHHHHHHHHHH----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1054 LSLH-----CKDRETDAQVAEKLWQV----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1054 l~~~-----~~~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
-..+ .......+++...+... ..+.+-++|+|+++.- ...+.+...+..-...+.+|++| +...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 00111122222222111 2355567899998763 34555555554433445555544 43444322
Q ss_pred -CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1122 -MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1122 -~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
......+++++++.++....+.+.+...... --.+.+..|++.++|..-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 2224689999999999887777655321110 013456678899999554
No 259
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.55 E-value=0.0082 Score=77.59 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=43.7
Q ss_pred cccCCCceeehhhHHHHHHhhhcCC---CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGS---AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~---~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|....+++|-+..++++..++.... ...++++|+|.+|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999987532 3356799999999999999999998654
No 260
>PRK06620 hypothetical protein; Validated
Probab=96.54 E-value=0.01 Score=67.01 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=73.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+.+-|||..|+|||+|++.+.+.... .++. ..+.. . +.++ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~---------------------~-------~~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN---------------------E-------EILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc---------------------h-------hHHh-cC
Confidence 56889999999999999998554321 1111 00000 0 0111 23
Q ss_pred EEEEEeCCCCccc--hhhhcCCCCCCCCCcEEEEccCChhh-------hccCCCCcEEEecCCChHHHHHHHHHHhcCCC
Q 000202 1080 FLLLLDDVWEQID--LEAVGIPVPGSENGSKIFMASRELDV-------CRNMDVNMVVKLETLSMKDAWELFCKEVGGII 1150 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~--~~~l~~~l~~~~~gs~IivTTR~~~v-------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~ 1150 (1866)
-+|++||+....+ +-.+...+ ...|..||+|++...- ..++....++++++++.++-..+..+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788899974221 11111111 1356788988875432 22333445899999999998888877664211
Q ss_pred CCchHHHHHHHHHHHcCCChH
Q 000202 1151 QSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1151 ~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
-.--+++..-|++.+.|---
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHH
Confidence 01113445556666666543
No 261
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.013 Score=76.79 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred cccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..++|.+.-++.+.+++...+.. .+.++|..|+||||+|+.+.+.-.-.... ....+++.....+.|......
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHhcCCCC
Confidence 34667777777777777655543 46799999999999999985422110000 000112222333333322211
Q ss_pred CC-----CCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC-
Q 000202 1057 HC-----KDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM- 1122 (1866)
Q Consensus 1057 ~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~- 1122 (1866)
+. ......+++. .+.+.+ .+++-++|+|++.. ....+.+...+......+.+|++|.+ ..+....
T Consensus 90 d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 90 DVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred eEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 10 0111122211 122221 34566899999875 34455565544433345666665544 3332211
Q ss_pred CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1123 DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1123 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
.....+.++.++..+....+.+.+......- -.+.+..|++.++|.+..+...-
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235788999999988888877664322111 13456778999999886554433
No 262
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.52 E-value=0.027 Score=66.46 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.-.+.++|||.+|+|||.+|++++.+....|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3477899999999999999999999875543
No 263
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.52 E-value=0.015 Score=73.45 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=83.2
Q ss_pred CCceeehhhHHHHHHhhh--------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHH
Q 000202 186 KDLIGVEWRIKEIESLLR--------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~--------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
.++.|.+...+.+..... .+-...+-|.++|++|+|||.+|+++++.....| +-.....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH---------
Confidence 467787766655554211 1223356799999999999999999999764332 1111110
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH--------------HHHHHhhccCCCCCCCEEEE
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR--------------QIELLIGRLDRFASGSQVII 323 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~Iii 323 (1866)
+.....+.. .......+...-...+++|++|+++..- .+..++..+.....+.-||.
T Consensus 295 ----l~~~~vGes-----e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 295 ----LFGGIVGES-----ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----hcccccChH-----HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 111110000 0000112222224578999999997310 11222222222233444666
Q ss_pred Eccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcCC
Q 000202 324 TTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFR 360 (1866)
Q Consensus 324 TTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 360 (1866)
||.+.+.+.. ...+..+.++..+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 7765543221 123567889999999999999877643
No 264
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.027 Score=72.63 Aligned_cols=177 Identities=18% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCCceeehhhHHHHHH---hhhc-------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIES---LLRT-------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~---~L~~-------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..++.|.++..++|.+ +|.. +..-++-|.++|++|+|||-||++++-+-. +=|+.+++.
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS------ 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS------ 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH------
Confidence 4578888876666555 4442 223366799999999999999999997532 224443332
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-----------------HHHHHHHhhccCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-----------------PRQIELLIGRLDRFAS 317 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-----------------~~~~~~l~~~~~~~~~ 317 (1866)
++.....+... ....+.....-.+.++.|.+|+++. ...++.++.....+..
T Consensus 379 ------EFvE~~~g~~a-----srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ------EFVEMFVGVGA-----SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ------HHHHHhcccch-----HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 11111111100 1111222223355678888888753 2236677777776666
Q ss_pred CCEEEE--EccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 318 GSQVII--TTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 318 gs~Iii--TTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
+..||+ +|+..+++... ..+..+.++.-+..+..+.|..|+-+... ..+..++++ ++...-|++=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~-~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL-DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC-CcchhhHHH-HHhcCCCCcHH
Confidence 554443 56666554332 22567788888889999999988843332 234556666 88888887744
No 265
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.51 E-value=0.02 Score=61.69 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc--------------------ccceEEEEeeccc
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH--------------------FEGSYFACNVRAA 249 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~~~~~~~~~ 249 (1866)
|-+...+.|...+..+. -...+.++|..|+||+|+|.++++.+-.. ++...|+......
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44566677777776542 35568899999999999999999854332 2222222110000
Q ss_pred cccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 250 EETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 250 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
..-. .+-.+++...+... -..+++=++|+||++ +.+...+|+..+.....++++|++|++
T Consensus 80 -~~i~-i~~ir~i~~~~~~~----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 80 -KSIK-IDQIREIIEFLSLS----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp -SSBS-HHHHHHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred -chhh-HHHHHHHHHHHHHH----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0000 11111111111100 013456688999998 466778888887777789999999987
Q ss_pred cch-hccC-ccceeeecCCCC
Q 000202 328 KQV-LTNC-EVDHIYQMKELV 346 (1866)
Q Consensus 328 ~~v-~~~~-~~~~~~~l~~L~ 346 (1866)
..- +... .....+.+.+|+
T Consensus 142 ~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHTTSEEEEE----
T ss_pred hHHChHHHHhhceEEecCCCC
Confidence 743 2211 123456666553
No 266
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.046 Score=65.57 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=98.1
Q ss_pred cCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc--eEEEEeeccccccccHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG--SYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.+..++||+.++..+.+++.. +.+....+-|.|-+|.|||.+...++.+....... .+++.-. .-.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~----sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCT----SLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeec----cccchHHHH
Confidence 346799999999999999874 23446678899999999999999999876665543 2444321 112224455
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhc-C-cEEEEEecCCCHH--HHHHHhhccCCC-CCCCEEEEEccc------c
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLAR-K-KVLIVFDDVNHPR--QIELLIGRLDRF-ASGSQVIITTRD------K 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k-~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~IiiTTR~------~ 328 (1866)
..++..+.........+......+.+.... + .+|+|+|.++... .-..+...+.|. -+++|+|+.--- +
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 555555532222111111111333333333 3 6899999987422 111121222221 346676654211 1
Q ss_pred chhccCc-----cceeeecCCCCHHHHHHHHHhhc
Q 000202 329 QVLTNCE-----VDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 329 ~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+.... ....+..++-+.++-.+.|..+.
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1111111 23567788999999999998765
No 267
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.50 E-value=0.0019 Score=84.74 Aligned_cols=106 Identities=25% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcc-cCCccccCCCCCcE
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLF-VLPPEVGSLECLEV 1473 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~-~lP~~i~~L~~L~~ 1473 (1866)
.+|+|+.|.+.+-.....--...+.++++|+.||+|+|+++.+ ..+++|+||+.|.+++=.+.. .--..+-+|++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4677888877653222221234467788999999999988888 788899999998887644322 11124567888999
Q ss_pred EEccCCCCCcCChh-------hcCCCccceecccc
Q 000202 1474 LDLRGTEIKMLPKE-------IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~-------i~~L~~L~~L~l~~ 1501 (1866)
||+|......-|.- -..|++|+.|++++
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99987654433311 12377788887763
No 268
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.49 E-value=0.0096 Score=69.29 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=96.3
Q ss_pred CCCceeehhhHHHHHHhhhcCCCC-cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAG-VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~-~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
.+.|-+|+.++..+..++...+.. ...|-|+|-.|.|||.+.+++++.... ..+|+.....+ ....+...++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ecf----t~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVECF----TYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHhc----cHHHHHHHHH
Confidence 357889999999999999866543 444589999999999999999987632 34687755442 3366777777
Q ss_pred HHHh-ccccccCccc--hhH----HHHHH--Hhh--cCcEEEEEecCCCHHHHHHH-----h---hccCCCCCCCEEEEE
Q 000202 264 SKLL-NDRNVKNFQN--ISV----NFQSK--RLA--RKKVLIVFDDVNHPRQIELL-----I---GRLDRFASGSQVIIT 324 (1866)
Q Consensus 264 ~~~~-~~~~~~~~~~--~~~----~~l~~--~L~--~k~~LlVlDdv~~~~~~~~l-----~---~~~~~~~~gs~IiiT 324 (1866)
.+.. ...+...... ... ..+.+ ... ++.++|||||++...+.++. . ..++ .+. -+|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEE
Confidence 7774 2222111111 000 12222 122 45899999999865543321 1 1111 122 33444
Q ss_pred cccc---chhccCccc--eeeecCCCCHHHHHHHHHhh
Q 000202 325 TRDK---QVLTNCEVD--HIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 325 TR~~---~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
+--. .-...+|.. -++..+.-+.+|-.+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322 112222332 34567788888888877643
No 269
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.043 Score=68.19 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=96.3
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc------ccccceEE-EEEecCCCCHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV------KVMFHVII-WVTVSRYWNTRKIQK 1048 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~~~~ 1048 (1866)
+.+++|.+..++.+.+.+...... .+-++|+.|+||||+|+.+.+.-.- ...|...+ -+......+... .+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~ 94 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IR 94 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HH
Confidence 345667777888888888765544 7889999999999999998542111 01121111 111111111111 11
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhcc-CCC
Q 000202 1049 QVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRN-MDV 1124 (1866)
Q Consensus 1049 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~-~~~ 1124 (1866)
.+.+++.. .-..+++-++++|++... ..++.+...+........+|++| ....+... ...
T Consensus 95 ~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr 158 (367)
T PRK14970 95 NLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158 (367)
T ss_pred HHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc
Confidence 22221110 012345557999998753 33555544333323345555554 33333221 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
...+++++++.++....+...+...... --.+.+..+++.++|.+-.
T Consensus 159 ~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRD 205 (367)
T ss_pred ceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHH
Confidence 3578999999999888887765432211 1134566788888886643
No 270
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.064 Score=64.08 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=63.2
Q ss_pred cCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++. .....+++..+....+++.+|++|.+. .++... .....+.+.+++.+++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c--
Confidence 4556788999984 566778888777767788888887765 344332 2356889999999999988876541 1
Q ss_pred ChhHHHHHHHHHHHhCCCcc
Q 000202 365 DAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPL 384 (1866)
. ...+..+++.++|.|+
T Consensus 182 ~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 E---ISEILTALRINYGRPL 198 (325)
T ss_pred C---hHHHHHHHHHcCCCHH
Confidence 1 1235667888999996
No 271
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.025 Score=68.59 Aligned_cols=132 Identities=16% Similarity=0.236 Sum_probs=79.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
....+.|||..|.|||.|+.++.+......+...++....+ .....+...+... ..+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se--------~f~~~~v~a~~~~---------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE--------DFTNDFVKALRDN---------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH--------HHHHHHHHHHHhh---------hHHHHHHhh
Confidence 36689999999999999999999988877764444332221 2222232222211 112233434
Q ss_pred hcCcEEEEEecCCC----HHHHHHHhhccCC-CCCCCEEEEEccccc---------hhccCccceeeecCCCCHHHHHHH
Q 000202 288 ARKKVLIVFDDVNH----PRQIELLIGRLDR-FASGSQVIITTRDKQ---------VLTNCEVDHIYQMKELVHADAHKL 353 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~----~~~~~~l~~~~~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 353 (1866)
.-=++++||++- ...-+.+...+.. ...|-+||+|++... +.......-++++.+++.+.....
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 333788999963 1112233322221 133558999996542 222333456899999999999999
Q ss_pred HHhhc
Q 000202 354 FTQCA 358 (1866)
Q Consensus 354 f~~~a 358 (1866)
+.+.+
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 98866
No 272
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.053 Score=62.13 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
+..+.++...-..+...+.++|.+|+|||+||.++++.....-..++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444444432222345789999999999999999999776554445554
No 273
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.46 E-value=0.0075 Score=73.73 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred cccccchhhHHHHHHHhhhhhhccCCceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHH
Q 000202 682 NDLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAI 760 (1866)
Q Consensus 682 ~~~~g~~~d~~~li~~l~~~~~~~~~~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i 760 (1866)
..+++.+...+.++..+... ..|-+.|++|+|||++|+.+.+......+|+...||.++..+...+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 35777778888887776532 467789999999999999998776556688899999999999888876443
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.45 E-value=0.015 Score=78.83 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+++.|.+..++++.+++.. +-...+.|.++|.+|+|||+||+++++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34688999999998887642 11234568999999999999999999876443
No 275
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.42 E-value=0.00053 Score=67.71 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=67.2
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCC-CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCcccee
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNL-KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYL 1497 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 1497 (1866)
....+|...+|++|.+.++|+.+... +.+.+|+|++|. +..+|..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34567888899999999999887654 588999999988 5688999999999999999999999889888888888777
Q ss_pred cc
Q 000202 1498 TV 1499 (1866)
Q Consensus 1498 ~l 1499 (1866)
+.
T Consensus 129 ds 130 (177)
T KOG4579|consen 129 DS 130 (177)
T ss_pred cC
Confidence 65
No 276
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.42 E-value=0.045 Score=69.05 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc---cccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK---VMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV- 1074 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 1074 (1866)
.+-|.++|++|+|||++|+++++.-... ..+....|+.+..+. + +...... .......+.+..++.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e----L----l~kyvGe--te~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE----L----LNKYVGE--TERQIRLIFQRAREKA 285 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh----h----cccccch--HHHHHHHHHHHHHHHh
Confidence 3458899999999999999997643221 112233444443311 1 1000000 000011122222222
Q ss_pred hCCCcEEEEEeCCCCc---------cc-----hhhhcCCCCCC--CCCcEEEEccCChhhhc-----cCCCCcEEEecCC
Q 000202 1075 LNGEKFLLLLDDVWEQ---------ID-----LEAVGIPVPGS--ENGSKIFMASRELDVCR-----NMDVNMVVKLETL 1133 (1866)
Q Consensus 1075 L~~kr~LlVlDdv~~~---------~~-----~~~l~~~l~~~--~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L 1133 (1866)
-.+++++|+||+++.. .+ ...+...+... ..+..||.||...+... ....+..++++..
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCC
Confidence 2357899999999742 11 12232222221 13445666676554422 1234567999999
Q ss_pred ChHHHHHHHHHHhcC
Q 000202 1134 SMKDAWELFCKEVGG 1148 (1866)
Q Consensus 1134 ~~~~a~~Lf~~~~~~ 1148 (1866)
+.++..++|.++...
T Consensus 366 d~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 366 DAEAAADIFSKYLTD 380 (512)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 277
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.42 E-value=0.023 Score=77.13 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=87.1
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.++.|.+...++|.+.+.. +-...+-|.++|.+|+|||+||+++++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH------
Confidence 4577888887777776541 112345688999999999999999999765443 221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH--------------HHHHHHhhccCCC--CCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--------------RQIELLIGRLDRF--ASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~g 318 (1866)
+++....+... ..........-+..+.+|+||+++.. ..+..++..+... ..+
T Consensus 522 ------~l~~~~vGese-----~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ------EILSKWVGESE-----KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHhhcccCcHH-----HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11111111110 01112222223456799999998631 1234444444322 234
Q ss_pred CEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 319 SQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.-||.||...+.+... ..+..+.++..+.++-.++|..+.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 4466677655443221 235678899999999999997665
No 278
>PRK10536 hypothetical protein; Provisional
Probab=96.40 E-value=0.013 Score=66.31 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh-h-hccccceEEEEeeccccc-----cccH---
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK-I-SRHFEGSYFACNVRAAEE-----TGRL--- 255 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~~--- 255 (1866)
..+.++......+..++.. ..+|.+.|.+|+|||+||.+++.+ + ...|...+...-.-+... +.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788888888877764 248999999999999999999884 3 344554333211111000 0011
Q ss_pred -HHHHHHHHH---HHhccccccC-----ccchhHHHHHHHhhcCc---EEEEEecCCC--HHHHHHHhhccCCCCCCCEE
Q 000202 256 -DDLRKELLS---KLLNDRNVKN-----FQNISVNFQSKRLARKK---VLIVFDDVNH--PRQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 256 -~~l~~~ll~---~~~~~~~~~~-----~~~~~~~~l~~~L~~k~---~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~I 321 (1866)
.-...-+.. .+.+...... ..... -.--.+++++. -+||+|.+.+ ..+...++.. .+.+|++
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Ie-i~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVE-IAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEE-EecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 111111111 1111100000 00000 00112456654 4999999974 5667777655 4789999
Q ss_pred EEEccccc
Q 000202 322 IITTRDKQ 329 (1866)
Q Consensus 322 iiTTR~~~ 329 (1866)
|+|--..+
T Consensus 207 v~~GD~~Q 214 (262)
T PRK10536 207 IVNGDITQ 214 (262)
T ss_pred EEeCChhh
Confidence 99876543
No 279
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.056 Score=68.61 Aligned_cols=191 Identities=9% Similarity=-0.000 Sum_probs=100.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCccc--ccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEV--KVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.+++|.+.-++.+...+...+.. ++-++|..|+||||+|+.+.+.-.- ...+. ++..-.-.+.+..
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~---------pC~~C~~C~~~~~ 82 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSST---------PCDTCIQCQSALE 82 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCC---------CCcccHHHHHHhh
Confidence 3445667777777777888666655 5579999999999999987532110 00000 0000001111100
Q ss_pred Hhcc-----CCCCccCHHHHHHHHHH----HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCCh-hhhc
Q 000202 1053 QLSL-----HCKDRETDAQVAEKLWQ----VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASREL-DVCR 1120 (1866)
Q Consensus 1053 ~l~~-----~~~~~~~~~~~~~~l~~----~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~ 1120 (1866)
.... +.......+++.+.+.. -..+++-++|+|++..- ...+.+...+......+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 00000112222222211 01245668899999753 34555555444334456767666553 2221
Q ss_pred cC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1121 NM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1121 ~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.. .-...+++.+++.++....+.+.+......- -.+.+..|++.++|.+--+..+
T Consensus 163 tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 11 1136889999999998888876654321111 1345677999999988544433
No 280
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.39 E-value=0.025 Score=70.33 Aligned_cols=147 Identities=14% Similarity=0.245 Sum_probs=78.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 1077 (1866)
.+-|.++|.+|+|||++|+++++... .. |+.++. ..+. .... .........+.+.. ..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~~l~----~~~~------g~~~~~i~~~f~~a~~~ 223 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----SELV----QKFI------GEGARLVRELFELAREK 223 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----HHHh----Hhhc------cchHHHHHHHHHHHHhc
Confidence 45588999999999999999965322 11 222221 1111 1110 01111222222222 34
Q ss_pred CcEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
...+|+|||++... + +..+...+.. ...+.+||.||...+.... ...+..+.++..+
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 67899999997420 1 1111111111 1234567777775443221 1235689999999
Q ss_pred hHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
.++..++|..+....... -++ ..+++.+.|.-
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 999999999877544322 223 33555666643
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.39 E-value=0.018 Score=72.49 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
...+.|+|..|+|||+|++++++.-.. .... .++|++. .++...+...+... .. ..+++.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHHh
Confidence 345889999999999999999764321 1122 3456653 34555555555321 11 223333334
Q ss_pred CcEEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccC-Chh--------hhccCCCCcEEEecCCChHHHHHHHH
Q 000202 1078 EKFLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASR-ELD--------VCRNMDVNMVVKLETLSMKDAWELFC 1143 (1866)
Q Consensus 1078 kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR-~~~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~ 1143 (1866)
+.-+|++||+... ..+ +.+...+.. ...|..||+||. ... +..++....++.+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 4568999999742 111 112111110 123456888775 322 12233445688999999999999998
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1144 KEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+.+...... --+++..-|++.+.|.--
T Consensus 274 ~~~~~~~~~-l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 274 KMLEIEHGE-LPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHhcCCC-CCHHHHHHHHhccccCHH
Confidence 877532111 113456667777776543
No 282
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.38 E-value=0.021 Score=69.40 Aligned_cols=146 Identities=11% Similarity=0.106 Sum_probs=78.8
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++..+.+..++..... .++.++|.+|+||||+|+.+++.. .. ....++.+. .....+ +..+..+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~~i-~~~l~~~~ 92 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRIDFV-RNRLTRFA 92 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHHHH-HHHHHHHH
Confidence 34566777778888888866554 456669999999999999996532 11 122344333 122111 11111110
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc---cchhhhcCCCCCCCCCcEEEEccCChhhh-ccC-CCCcEEEe
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ---IDLEAVGIPVPGSENGSKIFMASRELDVC-RNM-DVNMVVKL 1130 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~~~~~l 1130 (1866)
. . ..+.+.+-+||+||+... ...+.+...+.....+.++|+||...... ... .....+.+
T Consensus 93 ~-------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 93 S-------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred H-------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 0 0 001234567889999753 22223332233334567888888654321 110 11135677
Q ss_pred cCCChHHHHHHHHH
Q 000202 1131 ETLSMKDAWELFCK 1144 (1866)
Q Consensus 1131 ~~L~~~~a~~Lf~~ 1144 (1866)
+..+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 77777777666543
No 283
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.38 E-value=0.014 Score=78.65 Aligned_cols=149 Identities=11% Similarity=0.154 Sum_probs=83.2
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---cccccc-ceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVMF-HVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.++||+++++.++..|......-+.++|.+|+|||++|+.+.+.- .+...+ +..+|.. +...+...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~----- 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAG----- 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhh-----
Confidence 467899999999988866555567799999999999999995421 111112 3334321 11111110
Q ss_pred ccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCcc----------c-hhhhcCCCCCCCCCc-EEEEccCChh----
Q 000202 1055 SLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQI----------D-LEAVGIPVPGSENGS-KIFMASRELD---- 1117 (1866)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~----------~-~~~l~~~l~~~~~gs-~IivTTR~~~---- 1117 (1866)
..-..+.++....+.+.+ ..++.+|++|++.... + -+.++..+. .|. ++|-+|..++
T Consensus 253 ---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHH
Confidence 001112222333333333 3467999999997321 1 122332222 332 3444444322
Q ss_pred ------hhccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1118 ------VCRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1118 ------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
+.+.+ ..+.++.++.++..+++....
T Consensus 327 ~~~d~al~rRf---~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRF---QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhC---ceEEeCCCCHHHHHHHHHHHH
Confidence 12222 478999999999999988644
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=96.38 E-value=0.062 Score=63.63 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcE
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKF 1080 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~ 1080 (1866)
.+.++|.+|+||||+|+.++......+.-...-|+.++. ..+ ........ .......+.+. ..-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a---~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA---MGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc---cCC
Confidence 477899999999999999955322111111112444442 122 22221111 11112222221 234
Q ss_pred EEEEeCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhccC--------CCCcEEEecCCChHHHHHH
Q 000202 1081 LLLLDDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCRNM--------DVNMVVKLETLSMKDAWEL 1141 (1866)
Q Consensus 1081 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~~a~~L 1141 (1866)
+|+||++... +..+.+...+.....+.+||+++....+.... .....+.+++++.++..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999999641 12233333333333456677777544331111 1245788999999998888
Q ss_pred HHHHhc
Q 000202 1142 FCKEVG 1147 (1866)
Q Consensus 1142 f~~~~~ 1147 (1866)
+.+.+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 877653
No 285
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.021 Score=64.04 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=98.5
Q ss_pred cccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|....+|||.+...+.+.-.+... ....--|.++|++|.||||||.-+++++..++... ++. .-....++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp--~leK~gDl 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGP--ALEKPGDL 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccc--cccChhhH
Confidence 445578999998888887776531 22344689999999999999999999886654311 010 00011111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccC--------CCCCCCEE-------
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLD--------RFASGSQV------- 321 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~--------~~~~gs~I------- 321 (1866)
. .+...|+... .|.+|.+.. ...-+.+.+... ..++++|.
T Consensus 95 a----------------------aiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 95 A----------------------AILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H----------------------HHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 1111122222 345677753 111122222211 12444543
Q ss_pred ----EEEccccchhccCc--cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 322 ----IITTRDKQVLTNCE--VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 322 ----iiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
=-|||--.+..-.. -..+.+++--+.+|-.+...+.|.. -..+-.++.+.+|+++..|-|-
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcH
Confidence 24888654433221 1346678888888888888877721 1122235668899999999994
No 286
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.37 E-value=0.015 Score=68.26 Aligned_cols=131 Identities=12% Similarity=0.130 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
...+.++|.+|+||||+|+.+++.-.....-....++.++.. ++... .- ........+.+.+. .
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~----~~-----g~~~~~~~~~~~~a-~-- 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGE----YI-----GHTAQKTREVIKKA-L-- 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhh----hc-----cchHHHHHHHHHhc-c--
Confidence 345789999999999999999542110010011122333221 11111 00 00111112222221 2
Q ss_pred cEEEEEeCCCCc----------cchhhhcCCCCCCCCCcEEEEccCChhh----------hccCCCCcEEEecCCChHHH
Q 000202 1079 KFLLLLDDVWEQ----------IDLEAVGIPVPGSENGSKIFMASRELDV----------CRNMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1079 r~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~v----------~~~~~~~~~~~l~~L~~~~a 1138 (1866)
..+|++|++... +..+.+...+......-.+|+++..... ...+ ...+.+++++.++-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHH
Confidence 348899999742 1233343333333233345555443222 1222 34678899998888
Q ss_pred HHHHHHHhc
Q 000202 1139 WELFCKEVG 1147 (1866)
Q Consensus 1139 ~~Lf~~~~~ 1147 (1866)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 888876654
No 287
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.06 Score=69.48 Aligned_cols=194 Identities=9% Similarity=0.014 Sum_probs=102.3
Q ss_pred ccccchhhHHHHHHHHHhccCCccE-EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASK-IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~v-i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+.+++|.+..++.+.+++...+..- +.++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|...-+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-------CCcccccHHHHHhhcccC
Confidence 3456677777888888887766554 67999999999999999854211000000 001111111111111000
Q ss_pred -------cCCCCccCH---HHHHHHHHHH-hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhcc
Q 000202 1056 -------LHCKDRETD---AQVAEKLWQV-LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRN 1121 (1866)
Q Consensus 1056 -------~~~~~~~~~---~~~~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~ 1121 (1866)
.+....... .++.+.+... ..+++-++|+|++.. ....+.+...+........+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 000000111 1222222111 235566889999875 345666655554434455555544 44444322
Q ss_pred C-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 000202 1122 M-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVTAK 1178 (1866)
Q Consensus 1122 ~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~g~ 1178 (1866)
. .-...|++..++.++..+.+.+.+......- -.+....|++.++|.+- |+..+-.
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1236899999999998888876554321111 12345668888999774 4434333
No 288
>PRK09183 transposase/IS protein; Provisional
Probab=96.35 E-value=0.011 Score=68.77 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+.|+|.+|+|||+||.++++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999886443
No 289
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.022 Score=71.00 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=86.8
Q ss_pred eehhhHHHHHHhhh-----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 190 GVEWRIKEIESLLR-----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|.++...+|.+... .+-+..+-|..+|+||+|||++|+++++.-...| +.+.+.
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgp---------- 502 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGP---------- 502 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eeccCH----------
Confidence 46555555654332 2334577899999999999999999999776665 322221
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCCCCCCEEEE--
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRFASGSQVII-- 323 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~Iii-- 323 (1866)
++++...++.. ....+..++.-+--+.+|.||.++.. ..+..++..+........|+|
T Consensus 503 --EL~sk~vGeSE-----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 503 --ELFSKYVGESE-----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred --HHHHHhcCchH-----HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 33333333221 11112222223345688889988642 235556655555555545554
Q ss_pred -EccccchhccC----ccceeeecCCCCHHHHHHHHHhhcC
Q 000202 324 -TTRDKQVLTNC----EVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 324 -TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
|-|...+-..+ ..+.++.++.-+.+--.++|+.++-
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 33433332221 2367888888888888999998884
No 290
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.33 E-value=0.0039 Score=66.45 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=54.7
Q ss_pred cEEEcccccccc-CchHHHHHHHHhhC-CCceEeeC-CCC--CCCCCchhHHHHhhhcceEEEEeccCc
Q 000202 17 DVFLSFRGEDTR-DNFTSHLYSALCQN-NVETFIDN-DLK--RGDEIPESLLGTIEASTISIIIFSEKY 80 (1866)
Q Consensus 17 dvFis~~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~-~~~--~g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (1866)
-|||||++.... ...|..|+..|++. |+.|.+|. +.. .+..+..++.++++++...|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 399999885532 36789999999999 99999998 664 377899999999999999999999665
No 291
>PRK06921 hypothetical protein; Provisional
Probab=96.32 E-value=0.0064 Score=71.00 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (1866)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568999999999999999999987665 34455654
No 292
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.31 E-value=0.069 Score=62.65 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|.+|+|||+||+++++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 577999999999999999998553
No 293
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.30 E-value=0.025 Score=71.24 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=86.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++++.-.....=..+++++ ..++...+...+... .. ..+.+.+++ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KM----EEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence 4688999999999999999966432211112344554 334444555544321 12 223333433 2
Q ss_pred EEEEEeCCCCcc---ch-hhhcCCCCC-CCCCcEEEEccCCh-h--------hhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQI---DL-EAVGIPVPG-SENGSKIFMASREL-D--------VCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|||||+.... .+ +.+...+.. ...|..||+|+... . +...+....++.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 378899997521 11 112211111 12345677777542 1 2233333457899999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+...... --++...-|++.+.|..-.
T Consensus 281 ~~~~~~~-l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 281 AEEEGLE-LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHH
Confidence 7543211 1134566677777776543
No 294
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.074 Score=67.21 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=95.6
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccc---c------------------ccceEEE
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVK---V------------------MFHVIIW 1034 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~---~------------------~F~~~~w 1034 (1866)
+..++|.+..++.+.+.+...+. ..+-++|..|+||||+|+.+.+.-.-. . +++ ..+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 34566777777888888866655 457789999999999999885421110 0 111 111
Q ss_pred EEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHH-HHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 000202 1035 VTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLW-QVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM 1111 (1866)
Q Consensus 1035 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 1111 (1866)
+.-.....+.+ ..++.+.+. ....+.+-++|+|++... ...+.+...+.....+..+|+
T Consensus 95 i~g~~~~gid~------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 95 IDGASHRGIED------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eeccccCCHHH------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 11000011111 111111111 112356678899998742 334445444443334556666
Q ss_pred ccCC-hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1112 ASRE-LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1112 TTR~-~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
+|.+ ..+.... .....+++++++.++....+.+.+...... --.+.+..|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 5543 3332221 123578999999999888777655322111 123456778899999664
No 295
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.28 E-value=0.021 Score=64.83 Aligned_cols=185 Identities=12% Similarity=0.041 Sum_probs=106.9
Q ss_pred CCcccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEE-EEecCCCCHHHHHHHHHH
Q 000202 974 TSNVTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIW-VTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 974 ~~~~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~ 1052 (1866)
+..+.++.|.+..+..+.+.+.....+....+|++|.|||+-|..+...-.-.+.|.+++. .++|...... +.+.=
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K-- 108 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK-- 108 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh--
Confidence 3445556777778888888887767788999999999999998887543333455655442 2343322111 11100
Q ss_pred HhccCCCCccCHHHHHHHHHHHh--CCCc-EEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhhh-ccC-CCC
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVL--NGEK-FLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDVC-RNM-DVN 1125 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~ 1125 (1866)
..+...+........ .-+. =.+|||+.++ .+.|..+...+......++.|+.|..-... ... .-.
T Consensus 109 --------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 109 --------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 000000000000000 0122 3677899986 577998888776666667766555443321 111 112
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.-|..++|.+++...-+...+......- ..+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDI-DDDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcH
Confidence 4678899999998888887774332221 1334667888888854
No 296
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.28 E-value=0.044 Score=70.04 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=86.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|||..|+|||.|++++.+.......--.+++++ ..++..++...+... . ...+++.++. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~----~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----K----GDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----c----HHHHHHHhhc-C
Confidence 4588999999999999999976432211112334554 334444444433211 1 1223333433 2
Q ss_pred EEEEEeCCCCc---cchhh-hcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQ---IDLEA-VGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
=+|||||+... ..|+. +...+.. ...|..|||||+.. .+...+....++.++..+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999753 22321 2111111 12356688888752 23444555678999999999999999987
Q ss_pred hcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
+...... --+++..-|++.+.+..
T Consensus 459 a~~r~l~-l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQEQLN-APPEVLEFIASRISRNI 482 (617)
T ss_pred HHhcCCC-CCHHHHHHHHHhccCCH
Confidence 7533211 11344555666655543
No 297
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.27 E-value=0.023 Score=63.59 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=41.0
Q ss_pred cccCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+...+.++|.+...+.|.+-... .+....-|.+||..|.|||++++++.++...+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34556899999999887653321 12234567889999999999999999977654
No 298
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.27 E-value=0.032 Score=76.59 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCceeehhhHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+.++......-...+.+. ..++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~------ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEK------ 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhccc------
Confidence 468999999999988886421 12456889999999999999999986544322223332 2221110
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCC--CHHHHHHHhhccCCC----C-------CCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVN--HPRQIELLIGRLDRF----A-------SGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~IiiT 324 (1866)
.....+.+..+ ..........+...++. ...+|+||+++ +++.+..|+..+... + ..+-||+|
T Consensus 638 --~~~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 638 --HSVARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --chHHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11122222221 11111111223333333 34589999998 456666666655322 1 23447777
Q ss_pred ccc
Q 000202 325 TRD 327 (1866)
Q Consensus 325 TR~ 327 (1866)
|.-
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 299
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.25 E-value=0.013 Score=61.58 Aligned_cols=89 Identities=18% Similarity=0.067 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|.+|+||||+++.+........ ..+++++.+........... ...................+....+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4688999999999999999955322221 23455554443222222111 1111111112222223334444444444
Q ss_pred -EEEEEeCCCCccc
Q 000202 1080 -FLLLLDDVWEQID 1092 (1866)
Q Consensus 1080 -~LlVlDdv~~~~~ 1092 (1866)
.+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 9999999987533
No 300
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.018 Score=65.28 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=28.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh----hccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI----SRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~ 244 (1866)
-|+|.++|++|.|||+|.++++++. ...|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5789999999999999999999943 34555555554
No 301
>CHL00176 ftsH cell division protein; Validated
Probab=96.24 E-value=0.042 Score=71.82 Aligned_cols=172 Identities=13% Similarity=0.227 Sum_probs=94.8
Q ss_pred cccccchhhHHHHHHHHHhccCC---------ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVT---------ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~---------~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
++.|.....+++.+++.++.... .+-|.++|++|+|||+||++++..... -++.++. .++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~----s~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISG----SEF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccH----HHH
Confidence 34444444556677776664321 235889999999999999999653211 1233221 111
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc------------cc----hhhhcCCCCC--CCCCcE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ------------ID----LEAVGIPVPG--SENGSK 1108 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~------------~~----~~~l~~~l~~--~~~gs~ 1108 (1866)
.... .+ .....+...+.+......++|+|||++.. .. +..+...+.. ...+-.
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 00 01122233344455678899999999632 11 2223222221 223556
Q ss_pred EEEccCChhhhc-----cCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1109 IFMASRELDVCR-----NMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1109 IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
||.||...+... ....+..+.+...+.++-.+++..++......+ ......+++.+.|.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 677776644322 123457889999999999999988776532222 22345577777773
No 302
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.1 Score=66.44 Aligned_cols=182 Identities=10% Similarity=-0.006 Sum_probs=97.5
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc---ccc----------------ccceEEEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE---VKV----------------MFHVIIWV 1035 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~---~~~----------------~F~~~~wv 1035 (1866)
.+..++|.+.-+..+.+++...+.+ .+.++|..|+||||+|+.+...-. ... .|.....+
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3445667777778888888665544 456899999999999999843211 000 01111222
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEc
Q 000202 1036 TVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1036 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivT 1112 (1866)
..+....+.. ...+.+.+.. -..+++-++|+|++... ...+.+...+........+|++
T Consensus 94 daas~~gvd~------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 94 DAASNRGIDD------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred eCccCCCHHH------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111111111 1111111111 12456679999998753 3455555444433344555555
Q ss_pred cCC-hhhhcc-CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1113 SRE-LDVCRN-MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1113 TR~-~~v~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
|.+ ..+... ......+.+.+++.++....+.+.+...... --.+.+..|+..++|.+..+...
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 533 333221 1112578999999999888777655322111 11234566888888876544433
No 303
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.22 E-value=0.011 Score=72.41 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCC
Q 000202 981 NYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKD 1060 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 1060 (1866)
...++.++.+...+... ..|.++|++|+|||++|+.+++.......|+.+.||.+...++..++...+.- .+.....
T Consensus 178 ~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy~~ 254 (459)
T PRK11331 178 FIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGFRR 254 (459)
T ss_pred cCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCeEe
Confidence 34567788888887643 35778999999999999999765444456788889999988887766543210 0000000
Q ss_pred ccCHHHHHHHHHHHhC--CCcEEEEEeCCCC
Q 000202 1061 RETDAQVAEKLWQVLN--GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1061 ~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~ 1089 (1866)
... -..+.+.+..+ +++++||+|++..
T Consensus 255 ~~G--~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 255 KDG--IFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred cCc--hHHHHHHHHHhcccCCcEEEEehhhc
Confidence 000 11222333322 4689999999975
No 304
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.14 Score=61.69 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=51.8
Q ss_pred cEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCCh
Q 000202 291 KVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDA 366 (1866)
Q Consensus 291 ~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 366 (1866)
+=++|+|+++ +......++..+.....+..+|+||.+.. +.... .....+.+.+++.+++.+.+.... . ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG---V--AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC---C--Cc
Confidence 3344568886 45555555555554445677888887764 33221 224678999999999988886542 1 11
Q ss_pred hHHHHHHHHHHHhCCCcce
Q 000202 367 GYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 367 ~~~~~~~~i~~~~~GlPLA 385 (1866)
. . ..+..++|-|+.
T Consensus 189 ~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 P-E----ERLAFHSGAPLF 202 (325)
T ss_pred H-H----HHHHHhCCChhh
Confidence 1 1 123568899964
No 305
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.20 E-value=0.0058 Score=68.89 Aligned_cols=34 Identities=24% Similarity=0.519 Sum_probs=28.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
-.++|.|..|+|||||...+.......|..++.+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3578999999999999999999899999555444
No 306
>PRK06526 transposase; Provisional
Probab=96.18 E-value=0.0085 Score=69.33 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=22.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.-+.|+|.+|+|||+||.++.+.....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 458999999999999999999865443
No 307
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.14 E-value=0.032 Score=71.11 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=88.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc--ceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF--HVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
...+.|+|..|+|||+|++++.+.- ...+ ..+++++. ..+...+...+... . ...+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTS------EKFTNDFVNALRNN-----T----MEEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----c----HHHHHHHHh
Confidence 3568899999999999999996542 2222 23445543 33444444444211 1 123334444
Q ss_pred CCcEEEEEeCCCCc---cch-hhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQ---IDL-EAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
+.-+|||||+... ..+ +.+...+.. ...|..||+||.... +...+....++++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 2448889999642 111 122211110 123455777776431 2334444568999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1143 CKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1143 ~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.+.+..... .--+++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGI-DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCC-CCCHHHHHHHHcCcCCCHHHH
Confidence 988753211 112345667888888766543
No 308
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.13 E-value=0.086 Score=66.35 Aligned_cols=150 Identities=12% Similarity=0.147 Sum_probs=82.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
..+.|+|..|+|||+|++++.+.-.. .-..+++++ ...+...+...+... . .+.+++.++ +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-cC
Confidence 56889999999999999999664322 112334554 234444554444321 1 123344443 34
Q ss_pred EEEEEeCCCCccc--h--hhhcCCCCC-CCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHHHHHHHH
Q 000202 1080 FLLLLDDVWEQID--L--EAVGIPVPG-SENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAWELFCKE 1145 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 1145 (1866)
-+|++||+..... + +.+...+.. ...|..||+||... .+..++....++.+++++.++-..++.++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4788899875321 1 122211110 11355688877542 22333444578999999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHcCC
Q 000202 1146 VGGIIQSPDIHLYARAIVKGCCG 1168 (1866)
Q Consensus 1146 ~~~~~~~~~~~~~~~~I~~~c~G 1168 (1866)
+...... --+++..-|+..+.|
T Consensus 284 ~~~~~~~-l~~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALSIR-IEETALDFLIEALSS 305 (445)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCC
Confidence 7432111 012334445555554
No 309
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.028 Score=67.68 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHH-
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSK- 285 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~- 285 (1866)
.....+.+.|.+|+|||+||..++. ...|+ |+.....-+...--. ......+++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FP---FvKiiSpe~miG~sE--------------------saKc~~i~k~ 590 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFP---FVKIISPEDMIGLSE--------------------SAKCAHIKKI 590 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCC---eEEEeChHHccCccH--------------------HHHHHHHHHH
Confidence 3466788999999999999999986 45677 343332210100000 000011222
Q ss_pred ---HhhcCcEEEEEecCCCHHH------------HHHHhhccCCCCC-CCE--EEEEccccchhccCcc----ceeeecC
Q 000202 286 ---RLARKKVLIVFDDVNHPRQ------------IELLIGRLDRFAS-GSQ--VIITTRDKQVLTNCEV----DHIYQMK 343 (1866)
Q Consensus 286 ---~L~~k~~LlVlDdv~~~~~------------~~~l~~~~~~~~~-gs~--IiiTTR~~~v~~~~~~----~~~~~l~ 343 (1866)
.-+..--.||+||++..-+ ++++...+....+ |-| |+-||-...++..++. ...|+|+
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 2244556899999975322 3444433333223 444 4457777888888764 4578999
Q ss_pred CCCH-HHHHHHHHhh
Q 000202 344 ELVH-ADAHKLFTQC 357 (1866)
Q Consensus 344 ~L~~-~ea~~Lf~~~ 357 (1866)
.++. ++..+.++..
T Consensus 671 nl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEEL 685 (744)
T ss_pred ccCchHHHHHHHHHc
Confidence 9988 6777777654
No 310
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.085 Score=69.02 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=101.6
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++-+..+.+++...+. ..+-++|..|+||||+|+.+...-.-...... ...++..-...+.+.....
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcCCC
Confidence 34456767777777777765543 46779999999999999999543211100000 0112222233333332221
Q ss_pred cCC-----CCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1056 LHC-----KDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1056 ~~~-----~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.+. ......+++.+.+ +. ..+++-++|+|++.. ...++.+...+........+|++|.+ ..+....
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 0111122222211 11 135556889999985 34566665555433334555554443 3332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
.-...+++..++.++....+.+.+......- -.+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 1135778889999888777776554321111 1234677889999987654433
No 311
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.027 Score=73.30 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
...+|-+..++.+.+.+... ..........|+.|||||.||++++..+-..=+.-+-++ .++ .+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D------MSE---y~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID------MSE---YM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec------hHH---HH
Confidence 47899999999888877632 223556778999999999999999987643212222222 221 22
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcE-EEEEecCC--CHHHHHHHhhccCC
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKV-LIVFDDVN--HPRQIELLIGRLDR 314 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~--~~~~~~~l~~~~~~ 314 (1866)
-+.-.+.+.+.++ ..........+-+..++++| +|.||.|+ +++.++.|+..+..
T Consensus 562 EkHsVSrLIGaPP-GYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 EKHSVSRLIGAPP-GYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHhCCCC-CCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2334445555443 22222223456667788877 78899997 57778888777654
No 312
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.098 Score=68.47 Aligned_cols=179 Identities=8% Similarity=0.057 Sum_probs=100.9
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcc---c------------------ccccceEE
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPE---V------------------KVMFHVII 1033 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~---~------------------~~~F~~~~ 1033 (1866)
.+..++|.+..++.+.+++...+.. .+-++|..|+||||+|+.+...-. . ..+|+. .
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 3445677777888888888766655 477999999999999988744211 0 012221 1
Q ss_pred EEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE
Q 000202 1034 WVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM 1111 (1866)
Q Consensus 1034 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 1111 (1866)
.+......++.++. +++.++... -..+.+=++|+|++..- ..++.+...+..-..++.+|+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 12221111121111 111111100 01234557899998753 446666655544334566555
Q ss_pred -ccCChhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1112 -ASRELDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1112 -TTR~~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
||+...+.... ....++++++++.++....+.+.+...... --.+.+..|+..++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 44444443322 223679999999999988887765432211 11234677889999976433
No 313
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.05 E-value=0.003 Score=72.42 Aligned_cols=128 Identities=24% Similarity=0.211 Sum_probs=88.5
Q ss_pred ccCcEEEccCCCCCCCCC------CCCCCcccEEEccCCcCCcc---cChhHHhcCCCCcEEEccCCCCC-----CCChh
Q 000202 1375 THAKMIFFMDNDLQTLPG------RPSCPNLLTLFLQRNCRLRV---IPPSFFELMTSLKVLNLSKTRIK-----SLPET 1440 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~------~~~~~~L~~L~L~~~~~l~~---~p~~~~~~l~~L~~L~Ls~~~i~-----~lp~~ 1440 (1866)
+.|+++.+..|.+..-+. +..++.|..+.+++|..... +-..-+.++++|++|||.+|-++ .+-..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 568888888888876552 34568899999988742211 11223578999999999999876 45567
Q ss_pred hcCCCCCcEEecccccCcccCCccc-----cCCCCCcEEEccCCCCC-----cCChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEV-----GSLECLEVLDLRGTEIK-----MLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i-----~~L~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++.+++|+.|++++|.+...-...+ ...++|+.|.+.+|.|+ .+-..+...+.|..|++.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 8889999999999997654332222 23678999999998876 22233555667777766543
No 314
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.03 E-value=0.03 Score=76.42 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
...++|.+..++.+...+... .....++.++|..|+|||+||+++++.....-...+.+. ..++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------ 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh------
Confidence 346899999999988877632 112347889999999999999999986543322223222 122111
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhc-CcEEEEEecCC--CHHHHHHHhhccC
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLAR-KKVLIVFDDVN--HPRQIELLIGRLD 313 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~--~~~~~~~l~~~~~ 313 (1866)
......+.+..+ ..........+...++. ..-+|+||+++ +...+..++..+.
T Consensus 640 --~~~~~~LiG~~p-gy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 640 --KHSVSRLVGAPP-GYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred --hhhHHHHhCCCC-cccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 111222222221 11111111223333333 33699999998 5666666666543
No 315
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.03 E-value=0.033 Score=61.24 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCceeehhhHHH---HHHhhhcC----CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKE---IESLLRTG----SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~---l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
++.||.+..... |.+.|... .-..+-|..+|.+|.|||.+|++++++...-| +.+ .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~v-k----------- 183 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LLV-K----------- 183 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EEe-c-----------
Confidence 578888766543 56666532 23467799999999999999999999754432 111 0
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--------------HHHHHHHhhccCC--CCCCCEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--------------PRQIELLIGRLDR--FASGSQVI 322 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--------------~~~~~~l~~~~~~--~~~gs~Ii 322 (1866)
..+++.+..++.. ....+...+.-+--++.+.||.++- .+.+++++..+.. .+.|...|
T Consensus 184 at~liGehVGdga-----r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 184 ATELIGEHVGDGA-----RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred hHHHHHHHhhhHH-----HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1123222222211 0001222223345689999998863 3345666665543 23465666
Q ss_pred EEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 323 ITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 323 iTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
-.|.+..++... .-..-++..--+++|-.+++..++-.-.-+.. ...+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 667666655432 22456777888899999999888732221111 1155677777773
No 316
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.03 E-value=0.012 Score=64.33 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=25.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++|.+|+|||.||.++++.....=-.+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45899999999999999999986555333345553
No 317
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.065 Score=65.96 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..++=|.+..+.+|.+++.. +-...+-|.+||++|+|||.||++++.+..--| +.....
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISAP------ 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecch------
Confidence 35678999999999887753 112356689999999999999999999764443 322211
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH 301 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 301 (1866)
++.+.+.++.. ....+...+.-..-++++++|+++-
T Consensus 258 ------eivSGvSGESE-----kkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ------EIVSGVSGESE-----KKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------hhhcccCcccH-----HHHHHHHHHHhccCCeEEEeecccc
Confidence 23332222211 1111233333466789999999974
No 318
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.13 Score=56.17 Aligned_cols=150 Identities=20% Similarity=0.317 Sum_probs=84.5
Q ss_pred Ccee-ehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 187 DLIG-VEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 187 ~~vG-r~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+|| .+..++++.+.+... -...+-|.++|.+|.|||-||+++|+. ..+.|+.+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~firvsgs------ 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSGS------ 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEEechH------
Confidence 4554 566777777665422 124566899999999999999999974 34455655443
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-------------HH---HHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-------------PR---QIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-------------~~---~~~~l~~~~~~~--~ 316 (1866)
++..+..++.. ....+...-.-.+-+-.|..|.+++ .+ ..-.++..+..| .
T Consensus 216 ------elvqk~igegs-----rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ------ELVQKYIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred ------HHHHHHhhhhH-----HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 12222222111 0000111111234567788888764 11 122333344433 3
Q ss_pred CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.-+||..|..-+++... ..+.-++.++-+++.-.+.++-+.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 456788777655554322 235667888888887778777554
No 319
>PRK08118 topology modulation protein; Reviewed
Probab=95.98 E-value=0.0032 Score=68.16 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=27.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEE
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIW 1034 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~w 1034 (1866)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999997655444 45777665
No 320
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.11 Score=68.04 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=97.1
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccc---cceE-EEE-EecCCCCHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVM---FHVI-IWV-TVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~---F~~~-~wv-~vs~~~~~~~~~~~i 1050 (1866)
+.+++|.+.-++.+.+++...+.. .+-++|+.|+||||+|+.+...---... +..+ .+. +....+++..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie----- 91 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE----- 91 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-----
Confidence 334667777777788888665544 5678999999999999998542110000 0000 000 0000000000
Q ss_pred HHHhccCC-CCccCHHHHHHHHHH-HhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEE-EccCChhhhcc-CCC
Q 000202 1051 LRQLSLHC-KDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIF-MASRELDVCRN-MDV 1124 (1866)
Q Consensus 1051 ~~~l~~~~-~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~v~~~-~~~ 1124 (1866)
+.... ....+..++.+.+.. -..+++-++|+|++.. ...++.+...+........+| +||+...+... ..-
T Consensus 92 ---idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 92 ---MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred ---EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 00000 000111222222211 1235667889999875 345666655444333344544 45544444322 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
...+++.+++.++....+...+....... ..+.+..|++.++|-+--+
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 35899999999998888876543221111 1234667889998876433
No 321
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.95 E-value=0.023 Score=68.08 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCc
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNF 275 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 275 (1866)
.+.+.+..-..+ +.++|+|.+|+|||||++.+++.+..+. +..+++..+.+ ......++++.+...+.........
T Consensus 122 RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555543323 4569999999999999999999877655 34344544554 3444567777776654432210111
Q ss_pred cc-hhH----HHHHHH--hhcCcEEEEEecCCC
Q 000202 276 QN-ISV----NFQSKR--LARKKVLIVFDDVNH 301 (1866)
Q Consensus 276 ~~-~~~----~~l~~~--L~~k~~LlVlDdv~~ 301 (1866)
.. ... ..+.++ -++++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 111 111122 257999999999964
No 322
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.15 Score=65.86 Aligned_cols=191 Identities=11% Similarity=-0.001 Sum_probs=101.7
Q ss_pred cccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
.+.+++|.+.-++.+.+++...+.. .+-++|..|+||||+|+.+.+.-.-...... .+++.-...+.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHHcCC
Confidence 3445677777788888888665554 5779999999999999998553211100000 0000000111111100
Q ss_pred cc-----CCCCccCHHHHHHHH---HH-HhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccC
Q 000202 1055 SL-----HCKDRETDAQVAEKL---WQ-VLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNM 1122 (1866)
Q Consensus 1055 ~~-----~~~~~~~~~~~~~~l---~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~ 1122 (1866)
.. +.......+++.+.+ .. -..+++-++|+|++..- ..++.+...+........+|.+|.+ ..+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 00 000011122222111 11 12456668889998753 4566666665544445666655543 3332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
.-...+++++++.++..+.+.+.+..... +--.+.+..|++.++|.+-.+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 11356899999999888888766532211 1123456668888898775443
No 323
>PF14516 AAA_35: AAA-like domain
Probab=95.92 E-value=0.23 Score=60.43 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=106.2
Q ss_pred HHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-----CCHHHHHHHHHHHhccCCCC-
Q 000202 987 VRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-----WNTRKIQKQVLRQLSLHCKD- 1060 (1866)
Q Consensus 987 ~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~l~~~~~~- 1060 (1866)
-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..+-. .+. ++++++..- .+...+++.++..+.....-
T Consensus 20 e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~ 96 (331)
T PF14516_consen 20 EQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLD 96 (331)
T ss_pred HHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCC
Confidence 34455555543 3478999999999999998885433322 333 446665542 35666666655555432211
Q ss_pred ----------ccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccc---h-hhhcCC----------CCCCCCCcEEEEcc
Q 000202 1061 ----------RETDAQVAEKLWQVL---NGEKFLLLLDDVWEQID---L-EAVGIP----------VPGSENGSKIFMAS 1113 (1866)
Q Consensus 1061 ----------~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~---~-~~l~~~----------l~~~~~gs~IivTT 1113 (1866)
..........+.+++ .+++.+|+||+|+..-. + +++... -+...+-+-|++.+
T Consensus 97 ~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 97 EKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 112223333444443 26899999999985321 1 111111 11111111233322
Q ss_pred CChhhh-cc----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhC
Q 000202 1114 RELDVC-RN----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAG 1182 (1866)
Q Consensus 1114 R~~~v~-~~----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~ 1182 (1866)
....+. .. ......++|++++.+|...|..++-.. -.+ ...+.|...+||+|--+..++..+..
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ---EQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 221111 11 122357889999999999998775322 111 12778999999999988888888875
No 324
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.92 E-value=0.061 Score=66.61 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..++||+..++.+...+..+. -|.|.|.+|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 479999999999887776543 4889999999999999999986543
No 325
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.053 Score=66.67 Aligned_cols=129 Identities=21% Similarity=0.291 Sum_probs=81.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
..-|.+||++|+|||-||++++++-..+| +.+-+. +++....++.. ........+.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKGP------------ELlNkYVGESE-----rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGP------------ELLNKYVGESE-----RAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecCH------------HHHHHHhhhHH-----HHHHHHHHHhhc
Confidence 44588999999999999999999877766 332221 34444443322 111122233335
Q ss_pred cCcEEEEEecCCC-------------HHHHHHHhhccCCC--CCCCEEEEEccccchhccC-----ccceeeecCCCCHH
Q 000202 289 RKKVLIVFDDVNH-------------PRQIELLIGRLDRF--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHA 348 (1866)
Q Consensus 289 ~k~~LlVlDdv~~-------------~~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ 348 (1866)
.-+++|.||.++. ...+..|+..+... ..|.-||-.|..+++.... .-+.++-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 6799999999964 22455666655533 2355566666555553221 23567788999999
Q ss_pred HHHHHHHhhcC
Q 000202 349 DAHKLFTQCAF 359 (1866)
Q Consensus 349 ea~~Lf~~~a~ 359 (1866)
|-.+.++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999987774
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.88 E-value=0.016 Score=60.16 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhcC
Q 000202 1002 IGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
|.|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999664
No 327
>PRK10536 hypothetical protein; Provisional
Probab=95.88 E-value=0.025 Score=64.08 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEE
Q 000202 980 VNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVII 1033 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~ 1033 (1866)
+.++.......+.++.+. ..|.+.|..|.|||+||.++..+.-..+.|+.++
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 344455566666677553 4899999999999999999854322234455433
No 328
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0037 Score=69.48 Aligned_cols=105 Identities=23% Similarity=0.253 Sum_probs=67.6
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc--cCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccce
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC--DFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRY 1496 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~ 1496 (1866)
+..|+.|++.++.++++- .+-.|++|++|.++.| +....++-...++++|++|++++|.|+-+- ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 455666666666554331 2335778899999888 667777777777899999999999876421 23667778888
Q ss_pred eccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1497 LTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1497 L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|++++|...... ......+.-+++|..|+-
T Consensus 121 Ldl~n~~~~~l~--------dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLD--------DYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccc--------cHHHHHHHHhhhhccccc
Confidence 888877543211 111223555677777663
No 329
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.84 E-value=0.033 Score=76.15 Aligned_cols=132 Identities=19% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|-+..++.+...+... ......+.++|+.|+|||+||+++++.+...-...+-+. ..++.....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~---- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHT---- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhcccccc----
Confidence 57899999999988877521 112345678999999999999999987643322222222 222211111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCc-EEEEEecCC--CHHHHHHHhhccCCC-----------CCCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKK-VLIVFDDVN--HPRQIELLIGRLDRF-----------ASGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~gs~IiiT 324 (1866)
...+.+..+ ..........+.+.++.++ -+++||+++ +++.++.|+..+..+ -..+-||+|
T Consensus 584 ----~~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 584 ----VSKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ----HHHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111112111 1111111123455555555 588999998 466667766665432 124456777
Q ss_pred ccc
Q 000202 325 TRD 327 (1866)
Q Consensus 325 TR~ 327 (1866)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 653
No 330
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.043 Score=68.66 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=106.3
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc----cc--ceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH----FE--GSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~----f~--~~~~~~~~~~~~~~~~~~~ 257 (1866)
...++||-+.-.+.|...+..+. -..--...|.-|+||||+|+-++..+-.. .+ +.|..+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C------------- 79 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC------------- 79 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh-------------
Confidence 34678999999999999988543 13334689999999999999999843211 11 011110
Q ss_pred HHHHHHHHHhccccccCcc---chhHHHHHHHh--------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEE
Q 000202 258 LRKELLSKLLNDRNVKNFQ---NISVNFQSKRL--------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIIT 324 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~---~~~~~~l~~~L--------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiT 324 (1866)
+.+-.. ...+..+++ +...+.+++.. +++.=+.|+|.|. +...+.+++..+....+....|+.
T Consensus 80 --k~I~~g--~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 80 --KEINEG--SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred --HhhhcC--CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 111000 000101111 11112233222 3455578999997 677899999888766667777776
Q ss_pred ccccchhc-c-CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCC
Q 000202 325 TRDKQVLT-N-CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQG 381 (1866)
Q Consensus 325 TR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 381 (1866)
|.+.+-.. . ....+.|.++.++.++-...+...+-... ....++...-|++..+|
T Consensus 156 TTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 156 TTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEG 212 (515)
T ss_pred cCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCC
Confidence 66654322 1 13357899999999988888877663322 22234455666666666
No 331
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.77 E-value=0.013 Score=62.48 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=74.8
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceec
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLT 1498 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~ 1498 (1866)
+.....+||++|.+..++ .+..+..|.+|.|++|.+...-|.--.-+++|..|.|.+|+|.++- ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456778889999887665 3567888999999999877666655556778999999999988663 2367888999987
Q ss_pred cccccccCCCccccCCCCCCChhhhhccccCcEeeccc
Q 000202 1499 VFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDV 1536 (1866)
Q Consensus 1499 l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~ 1536 (1866)
+-...-... . ....-.+..+++|+.|+.+.
T Consensus 120 ll~Npv~~k------~--~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHK------K--NYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcc------c--CceeEEEEecCcceEeehhh
Confidence 743111000 0 00111367899999999764
No 332
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.77 E-value=0.14 Score=62.43 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=79.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccc--eEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFH--VIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
....+-|||..|.|||.|++++.+... .... .+++++ ........+..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 356799999999999999999965332 2232 233333 33444444444322 1234455555
Q ss_pred CCCcEEEEEeCCCCc---cchhh----hcCCCCCCCCCcEEEEccCCh---------hhhccCCCCcEEEecCCChHHHH
Q 000202 1076 NGEKFLLLLDDVWEQ---IDLEA----VGIPVPGSENGSKIFMASREL---------DVCRNMDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1076 ~~kr~LlVlDdv~~~---~~~~~----l~~~l~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~~a~ 1139 (1866)
.-=++++||++-. +.|+. +...+. ..|..||+|++.. .+..++....++.+.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 3337889999752 22221 222222 2344899988543 33444555678999999999999
Q ss_pred HHHHHHhc
Q 000202 1140 ELFCKEVG 1147 (1866)
Q Consensus 1140 ~Lf~~~~~ 1147 (1866)
..+.+++.
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99988664
No 333
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.72 E-value=0.0037 Score=78.94 Aligned_cols=109 Identities=28% Similarity=0.329 Sum_probs=88.7
Q ss_pred ccccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
...++++..+++.+|.+..+.. +..+++|++|++++| .+..+.. +..++.|+.|++++|.|..++. +..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 4567888999999999999988 888999999999988 5555543 2567889999999999987763 455999999
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcC
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKML 1484 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~l 1484 (1866)
|++++|.+...-+ . +..+.+|+.+.+.+|.+..+
T Consensus 167 l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc
Confidence 9999998654433 2 57889999999999988755
No 334
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.72 E-value=0.14 Score=63.50 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|.+|+|||+||+++++... ..| +.+.. ..+ ...... .....+.+.+.......
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~----s~l----~~k~~g-----e~~~~lr~lf~~A~~~~ 238 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG----SEF----VQKYLG-----EGPRMVRDVFRLARENA 238 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----HHH----HHHhcc-----hhHHHHHHHHHHHHhcC
Confidence 45688999999999999999965322 222 22211 111 111100 01112222233333567
Q ss_pred cEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhc-----cCCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCR-----NMDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~ 1135 (1866)
.++|+||+++... . +..+...+.. ...+-.||.||...+... ....+..+.+...+.
T Consensus 239 P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 239 PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 8999999986310 0 1112212211 123556788887654422 123456789999999
Q ss_pred HHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
++..++|..+....... .++. .+++.+.|.-
T Consensus 319 ~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 319 RQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 99888888665433222 2333 3455555553
No 335
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.68 E-value=0.1 Score=67.36 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=79.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-+.++|++|+|||+||+.+.+.... . ++.++. .++... ... .....+...+........
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~----~~~~~~----~~g-----~~~~~l~~~f~~a~~~~p 148 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG----SDFVEM----FVG-----VGASRVRDLFEQAKKNAP 148 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH----HHHHHH----Hhc-----ccHHHHHHHHHHHHhcCC
Confidence 34789999999999999999653221 1 222221 111111 100 111223333334445567
Q ss_pred EEEEEeCCCCcc------------ch----hhhcCCCCC--CCCCcEEEEccCChhh-----hccCCCCcEEEecCCChH
Q 000202 1080 FLLLLDDVWEQI------------DL----EAVGIPVPG--SENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1080 ~LlVlDdv~~~~------------~~----~~l~~~l~~--~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ 1136 (1866)
++|+||+++... .+ ..+...+.. ...+-.||.||..... .+....+..+.+...+.+
T Consensus 149 ~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~ 228 (495)
T TIGR01241 149 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIK 228 (495)
T ss_pred CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHH
Confidence 999999996420 11 112111211 1234456666665432 222234578899999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
+-.++|..+.......++. ....+++.+.|.-
T Consensus 229 ~R~~il~~~l~~~~~~~~~--~l~~la~~t~G~s 260 (495)
T TIGR01241 229 GREEILKVHAKNKKLAPDV--DLKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHHHHhcCCCCcch--hHHHHHHhCCCCC
Confidence 9999998776543322211 1335777777743
No 336
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.64 E-value=0.036 Score=71.83 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=35.3
Q ss_pred CcccccchhhHHHHHHHHHhccC-----CccEEEEEcCCCchHHHHHHHHhc
Q 000202 975 SNVTAVNYTQRNVRKIFRYVNDV-----TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~l~~~-----~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.++.+.++.++++..++... ...++.++|..|+||||+++.+..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34445667777777777777432 235699999999999999999964
No 337
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.14 Score=57.09 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH---HHH
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV---NFQ 283 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~---~~l 283 (1866)
.+.+++.++|.-|.|||+++++.....-+. .++-+. ... ..-....+...+...+...+. ........ ..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~-i~~--~~~s~~~~~~ai~~~l~~~p~-~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVV-IDK--PTLSDATLLEAIVADLESQPK-VNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEE-ecC--cchhHHHHHHHHHHHhccCcc-chhHHHHHHHHHHH
Confidence 456689999999999999999665544332 222222 111 222234555555555554222 11111111 112
Q ss_pred -HHHhhcCc-EEEEEecCCC--HHHHHHHhh---ccCCCCCCCEEEEEcccc-------chhccC-cccee-eecCCCCH
Q 000202 284 -SKRLARKK-VLIVFDDVNH--PRQIELLIG---RLDRFASGSQVIITTRDK-------QVLTNC-EVDHI-YQMKELVH 347 (1866)
Q Consensus 284 -~~~L~~k~-~LlVlDdv~~--~~~~~~l~~---~~~~~~~gs~IiiTTR~~-------~v~~~~-~~~~~-~~l~~L~~ 347 (1866)
...-++++ +.+++|+..+ .+.++.+.- .-..+..--+|+..-.-+ .+.... ....+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 22236677 9999999974 334444332 222222222344433211 111111 12334 99999999
Q ss_pred HHHHHHHHhhcCCCCCCCh-hHHHHHHHHHHHhCCCcceeeeec
Q 000202 348 ADAHKLFTQCAFRGDHLDA-GYTELAHKALKYAQGVPLALKVLG 390 (1866)
Q Consensus 348 ~ea~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~GlPLAl~~~g 390 (1866)
++...++..+..+...+.+ -..+....|.....|.|.++..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9988888766543332222 224556778889999998876554
No 338
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.12 Score=64.77 Aligned_cols=73 Identities=26% Similarity=0.309 Sum_probs=45.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc-ccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE-ETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..-|.|.|..|+|||+||+++++.+...- .+++..+.... ....+..+++-+- ......+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 34588999999999999999999877543 33333222210 1112233333221 2333446
Q ss_pred hcCcEEEEEecCC
Q 000202 288 ARKKVLIVFDDVN 300 (1866)
Q Consensus 288 ~~k~~LlVlDdv~ 300 (1866)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6778899999996
No 339
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.61 E-value=0.044 Score=62.58 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34456666544445678999999999999999999987655545566765
No 340
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.14 Score=61.70 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=60.7
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCC
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHL 364 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 364 (1866)
+++=++|+|+++ +.+..+.++..+....+++.+|++|.+. .++... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 345578899998 5667888888887777788777666654 444332 234688999999999999887642 1
Q ss_pred ChhHHHHHHHHHHHhCCCccee
Q 000202 365 DAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 365 ~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
.+ ...++..++|.|+..
T Consensus 206 ~~-----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAA 222 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHH
Confidence 11 123577889999643
No 341
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.59 E-value=0.069 Score=65.35 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc---------------------cceEEEEe
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF---------------------EGSYFACN 245 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~~~~ 245 (1866)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +....+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356667777777777764443445689999999999999999999765432 12222211
Q ss_pred eccccccc-cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 246 VRAAEETG-RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 246 ~~~~~~~~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
... ... ...+..+++........ ..++.-++++|+++. .+...+++..+......+++|
T Consensus 82 s~~--~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDL--RKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccc--CCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 111 000 01111222211111100 135677899999985 445667777776667788998
Q ss_pred EEcccc-chhccC-ccceeeecCCCCHHHH
Q 000202 323 ITTRDK-QVLTNC-EVDHIYQMKELVHADA 350 (1866)
Q Consensus 323 iTTR~~-~v~~~~-~~~~~~~l~~L~~~ea 350 (1866)
++|.+. .+.... .....+++.+.+..+.
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHH
Confidence 888744 233211 2235566666444433
No 342
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.56 E-value=0.058 Score=64.78 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+.++|.+|+|||.||.++++.+...--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999997765544455554
No 343
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.55 E-value=0.046 Score=62.78 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
..|-++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34555665444456789999999999999999999877666567788763
No 344
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.081 Score=58.11 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=59.0
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
+..+-|.++|++|.|||-+|++++++. ..||+.+.+. ++.++..++.. .....+.+.
T Consensus 209 dppkgvllygppgtgktl~aravanrt-----dacfirvigs------------elvqkyvgega------rmvrelf~m 265 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS------------ELVQKYVGEGA------RMVRELFEM 265 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH------------HHHHHHhhhhH------HHHHHHHHH
Confidence 345668999999999999999999975 4567766554 23333322221 111223333
Q ss_pred hhc-CcEEEEEecCCC-------------HH---HHHHHhhccCCCCC--CCEEEEEccccchh
Q 000202 287 LAR-KKVLIVFDDVNH-------------PR---QIELLIGRLDRFAS--GSQVIITTRDKQVL 331 (1866)
Q Consensus 287 L~~-k~~LlVlDdv~~-------------~~---~~~~l~~~~~~~~~--gs~IiiTTR~~~v~ 331 (1866)
.+. |-++|.+|.++. .+ ..-.+...+..|.+ .-+|+..|..++.+
T Consensus 266 artkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 266 ARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred hcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 344 557888898752 11 12234444454544 34777777655443
No 345
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.54 E-value=0.048 Score=67.84 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
..-|.++|.+|+|||++|+++++. ....| +.+..+. +.. .... .....+...+.....+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se------L~~----k~~G-----e~~~~vr~lF~~A~~~~ 276 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE------LIQ----KYLG-----DGPKLVRELFRVAEENA 276 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch------hhh----hhcc-----hHHHHHHHHHHHHHhCC
Confidence 345789999999999999999653 33233 1121111 111 1100 01111222222233457
Q ss_pred cEEEEEeCCCCcc------------c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI------------D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~------------~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~ 1135 (1866)
.++|+||+++... . ...+...+.. ...+-+||.||...+.... ...+..+.+...+.
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 7899999975310 0 0111111111 1235678888876554322 12356889999999
Q ss_pred HHHHHHHHHHhcCC
Q 000202 1136 KDAWELFCKEVGGI 1149 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~ 1149 (1866)
++..++|..+....
T Consensus 357 ~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 357 KTKRRIFEIHTSKM 370 (438)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998776543
No 346
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.1 Score=63.07 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=84.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....+.+.|.+|+|||+||..+.. ...|..+--++ +.+.. +. .+...-..+.....+.-+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS---pe~mi----------G~--sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS---PEDMI----------GL--SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC---hHHcc----------Cc--cHHHHHHHHHHHHHHhhcC
Confidence 344566789999999999999843 34555322221 11110 00 0000011122223334455
Q ss_pred CcEEEEEeCCCCccchhhhcCCC---------------CCCCCCcEEEEccCChhhhccCCC----CcEEEecCCCh-HH
Q 000202 1078 EKFLLLLDDVWEQIDLEAVGIPV---------------PGSENGSKIFMASRELDVCRNMDV----NMVVKLETLSM-KD 1137 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~~~~~l~~~l---------------~~~~~gs~IivTTR~~~v~~~~~~----~~~~~l~~L~~-~~ 1137 (1866)
.=-.||+||+....+|-.++..+ |..++.--|+-||....+...|+- ...|.|+.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 66789999999888887766543 222233335557777888887763 46788999887 66
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHc
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGC 1166 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c 1166 (1866)
..+.++..- ...+.+.+.++.+...+|
T Consensus 678 ~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 766665432 112333455566666655
No 347
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.53 E-value=0.09 Score=59.51 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=27.3
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEE
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFS 746 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~ 746 (1866)
--+.|+|..|.||||++..+..+ ....|....+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 35779999999999999988744 556786666664
No 348
>PRK08118 topology modulation protein; Reviewed
Probab=95.49 E-value=0.0064 Score=65.80 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=28.6
Q ss_pred EEEEEcCCchhHHHHHHHHhcCcccc-ccccceEE
Q 000202 711 ILPISGMSGTGRTVLAQRVYSNKKVK-SHFPFRFW 744 (1866)
Q Consensus 711 Vi~IvG~gg~Gkttla~~v~~d~~v~-~~F~~~~w 744 (1866)
-|.|+|++|.||||+|+.+++.-.+. -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999886654 56887774
No 349
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.48 E-value=0.39 Score=54.01 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=64.1
Q ss_pred CcccccchhhHHHH-HHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 975 SNVTAVNYTQRNVR-KIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~-~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+++|+...++.+. ....++......-+-+||..|.|||++++++.+...-++ . --|.|++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~------------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKE------------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHH-------------
Confidence 34444443333222 223344555556688999999999999999965333222 1 12233321
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC---ccchhhhcCCCCCC----CCCcEEEEccCChhhhc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE---QIDLEAVGIPVPGS----ENGSKIFMASRELDVCR 1120 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~----~~gs~IivTTR~~~v~~ 1120 (1866)
+..+...+.+.++ -+..||+|.+||+.= ......++..+.++ ...-.|.+||...+..+
T Consensus 90 ------~L~~l~~l~~~l~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 ------DLGDLPELLDLLR--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------HhccHHHHHHHHh--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 1112222223232 145799999999862 33455555554432 22344556666666544
No 350
>PRK14974 cell division protein FtsY; Provisional
Probab=95.46 E-value=0.094 Score=62.99 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999988866543
No 351
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.35 Score=54.12 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=97.8
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHH----
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEK---- 1070 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---- 1070 (1866)
..+.+++.++|.-|.|||++.+++... ..+ +.++=|.++.+ .+...+...|..++..+ ...........
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHH
Confidence 344568999999999999999955221 111 11222444433 56777888888888763 23333333333
Q ss_pred HHHHh-CCCc-EEEEEeCCCCc--cchhhhcCC--CCC--CCCCcEEEEccCChhhhc--------cC--CCCcEEEecC
Q 000202 1071 LWQVL-NGEK-FLLLLDDVWEQ--IDLEAVGIP--VPG--SENGSKIFMASRELDVCR--------NM--DVNMVVKLET 1132 (1866)
Q Consensus 1071 l~~~L-~~kr-~LlVlDdv~~~--~~~~~l~~~--l~~--~~~gs~IivTTR~~~v~~--------~~--~~~~~~~l~~ 1132 (1866)
+.... +++| ..+++||.... ...+.++.. +.. ...=+++++- . +.+.. .. .....|.+.|
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G-q-p~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG-Q-PKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC-C-cccchhhchHHHHhhhheEEEEEecCC
Confidence 33332 5777 89999998752 333333221 111 1111223332 1 11111 11 1122389999
Q ss_pred CChHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPD--IHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~--~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
++.++.-.++..+..+...++. -.+....|.....|.|.+|..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999887777766644322221 233556688889999998876654
No 352
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.063 Score=64.85 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCceeehh---hHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccH
Q 000202 186 KDLIGVEW---RIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 186 ~~~vGr~~---~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
++.-|.|+ +++++.++|.... .=.+-|.++|++|.|||-||++++-+..-- +|.....+|++..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sGSEFdEm~-- 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASGSEFDEMF-- 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccccchhhhh--
Confidence 35566665 4566666776432 226679999999999999999998754222 2443333322210
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-------------HHHHHHHhhccCCCCCCCEEE
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-------------PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-------------~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
.+... ....+.....-++-++.|.+|.++. ...+..++..+..|....-||
T Consensus 378 -----------VGvGA-----rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 378 -----------VGVGA-----RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred -----------hcccH-----HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 00000 0011222233356689999999864 123566777777666554454
Q ss_pred E
Q 000202 323 I 323 (1866)
Q Consensus 323 i 323 (1866)
|
T Consensus 442 v 442 (752)
T KOG0734|consen 442 V 442 (752)
T ss_pred E
Confidence 4
No 353
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0045 Score=69.02 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred cccccccccccccccccccccccc-cccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccc
Q 000202 1690 PSLENLTLNHLWDLTCIWQGILPE-GSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1690 ~~L~~L~l~~~~~L~~~~~~~~~~-~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
+.+.+|++..|... .|...... ..||++..+.+..|| |++...+.+...+|.+-.|.+... ++.+.. ...
T Consensus 173 ~~v~tlh~~~c~~~--~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswa-----svD 243 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQ--LWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWA-----SVD 243 (418)
T ss_pred hhhhhhhcCCcHHH--HHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHH-----HHH
Confidence 45556665555332 23222211 258999999998885 454444444444555555544432 222221 112
Q ss_pred cccCCCCcCEEeccCCcccccc
Q 000202 1769 SCIMLPSLKKLRLHHLPELANI 1790 (1866)
Q Consensus 1769 ~~~~lp~L~~L~L~~c~~L~~i 1790 (1866)
.+..||.|..|.+.+.|-+..+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHcCCchhheeeccCCcccccc
Confidence 3457899999999888866555
No 354
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.40 E-value=0.029 Score=61.98 Aligned_cols=126 Identities=19% Similarity=0.222 Sum_probs=58.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh--hccccceEEEEeeccccccccH--HHHHHH-------
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI--SRHFEGSYFACNVRAAEETGRL--DDLRKE------- 261 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~--~~l~~~------- 261 (1866)
.+-....+.|. +..+|.+.|.+|.|||.||.+.+-+. ...|+..++....-+....-.+ .++-++
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 34444444444 34589999999999999999988632 4567777776543321111000 111111
Q ss_pred HHHHHhccccccCccchhHHHHH---------HHhhcC---cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQS---------KRLARK---KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~---------~~L~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
+...+..-.. .......+. ..++++ ..+||+|++.+ .+++..++.. .+.||+||++--.
T Consensus 83 ~~d~l~~~~~----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELFG----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHhC----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 1111110000 000001111 123443 57999999974 6688888665 4789999999765
Q ss_pred cc
Q 000202 328 KQ 329 (1866)
Q Consensus 328 ~~ 329 (1866)
.+
T Consensus 156 ~Q 157 (205)
T PF02562_consen 156 SQ 157 (205)
T ss_dssp --
T ss_pred ee
Confidence 43
No 355
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.37 E-value=0.041 Score=61.53 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE-eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC-NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+|.|.|..|.||||++.++...+.......++.. +..+.... . ...+ ..............+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~----~-~~~~----i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE----S-KRSL----INQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc----C-ccce----eeecccCCCccCHHHHHHHHhc
Confidence 36899999999999999998887765544444432 21111000 0 0000 0000000011112356777787
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
..+=.|++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 778899999999888776655442 3456677777655443
No 356
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.36 E-value=0.18 Score=58.08 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=90.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc--HHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR--LDDLR 259 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~l~ 259 (1866)
....|+|-.++-+++..++... -.+...|.|+|+.|.|||+|......+ ...|.-...++-....-..+. ...+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457999999999999998742 123446889999999999998876665 333433344433332112211 14444
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhhc------CcEEEEEecCCC----HHH---HHHHhhccCCCCCCCEEEEEcc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLAR------KKVLIVFDDVNH----PRQ---IELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~------k~~LlVlDdv~~----~~~---~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
+++..++.........-....+.+...|+. -++..|+|.++- ..| ...|-..-..-.|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 444444332211111111112344444432 368889988863 111 1222222222345667788998
Q ss_pred ccc-------hhccCccceeeecCCCCHHHHHHHHHhh
Q 000202 327 DKQ-------VLTNCEVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 327 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
-.- |-.......++-++.++-++-.+++++.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 542 2222222334445555555555555543
No 357
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.35 E-value=0.081 Score=63.09 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=54.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+-+.|+|..|+|||.||.++++.....-..+.|+.. ..+..++....... . ....+ +.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~----------~~l~~~lk~~~~~~-------~-~~~~l-~~l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF----------PEFIRELKNSISDG-------S-VKEKI-DAVK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH----------HHHHHHHHHHHhcC-------c-HHHHH-HHhc
Confidence 4568999999999999999999987654334555531 22333333322110 0 11122 2233
Q ss_pred cCcEEEEEecCCC--HHHHH--HHhhcc-C-CCCCCCEEEEEcc
Q 000202 289 RKKVLIVFDDVNH--PRQIE--LLIGRL-D-RFASGSQVIITTR 326 (1866)
Q Consensus 289 ~k~~LlVlDdv~~--~~~~~--~l~~~~-~-~~~~gs~IiiTTR 326 (1866)
+-=||||||+-. ...|. .++..+ . ....+-.+||||-
T Consensus 217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 455889999942 23332 233322 1 1124567888885
No 358
>PRK04132 replication factor C small subunit; Provisional
Probab=95.32 E-value=0.12 Score=69.07 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=88.3
Q ss_pred cCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEE
Q 000202 217 IGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIV 295 (1866)
Q Consensus 217 ~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 295 (1866)
+.++||||+|.++++++-. .+...+.-.+... ... .+..+++......... . -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~rg-id~IR~iIk~~a~~~~---~-----------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASD---ERG-INVIREKVKEFARTKP---I-----------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---ccc-HHHHHHHHHHHHhcCC---c-----------CCCCCEEEE
Confidence 7799999999999997633 2322222222111 011 2233333333221111 0 012457999
Q ss_pred EecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHH
Q 000202 296 FDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371 (1866)
Q Consensus 296 lDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 371 (1866)
||+++. ..+..+|+..+......+++|++|.+.. +.... ....++++++++.++-.+.+.+.+-...- .-.++.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~ 713 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEG 713 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHH
Confidence 999984 5577778777776667788887776553 22221 23578999999999988877765532211 112456
Q ss_pred HHHHHHHhCCCcc
Q 000202 372 AHKALKYAQGVPL 384 (1866)
Q Consensus 372 ~~~i~~~~~GlPL 384 (1866)
...|++.++|-+-
T Consensus 714 L~~Ia~~s~GDlR 726 (846)
T PRK04132 714 LQAILYIAEGDMR 726 (846)
T ss_pred HHHHHHHcCCCHH
Confidence 7889999999773
No 359
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.30 E-value=0.014 Score=59.68 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|++++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 360
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.26 E-value=0.054 Score=61.45 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=35.2
Q ss_pred hhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 201 LLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 201 ~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+|..+-..-.++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444444456789999999999999999999876665667888864
No 361
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.24 E-value=0.084 Score=56.98 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987655434455554
No 362
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.22 E-value=0.014 Score=69.49 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=41.3
Q ss_pred CCceeehhhHHHHHHhhhcC----CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTG----SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~----~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+++|.++.++++.+++... +...++++++|++|+||||||.++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999988742 23468899999999999999999998553
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.18 E-value=0.062 Score=59.72 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+++|.++|+.|+||||.+..++.+...+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999999987666533344443
No 364
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.16 E-value=0.56 Score=56.96 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=44.5
Q ss_pred CcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccccchhcc----C--ccceeeecCCCCHHHHHH
Q 000202 290 KKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRDKQVLTN----C--EVDHIYQMKELVHADAHK 352 (1866)
Q Consensus 290 k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~ 352 (1866)
++-+||+||... ..+|.+.+.. .+=.+||++|-+...... . .+...+.+.-.+.+-|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 367899999853 1233333322 345689999987654332 2 235678899999999999
Q ss_pred HHHhhcC
Q 000202 353 LFTQCAF 359 (1866)
Q Consensus 353 Lf~~~a~ 359 (1866)
+...+.-
T Consensus 224 yV~~~L~ 230 (431)
T PF10443_consen 224 YVLSQLD 230 (431)
T ss_pred HHHHHhc
Confidence 9987764
No 365
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.25 Score=59.24 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=100.8
Q ss_pred ccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCc---cc----------ccccceEEEEEecCCCCHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYP---EV----------KVMFHVIIWVTVSRYWNTR 1044 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~~ 1044 (1866)
.+.|.++.++.+.+.+...+. ...-++|..|+||+++|..+.+.- .. ...+....|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 355666777777777776664 578899999999999998774321 10 1122233444211000000
Q ss_pred HHHHHHHHHhcc--CCCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1045 KIQKQVLRQLSL--HCKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1045 ~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
.+...-+...+. .....-..++ +..+.+.+ .+.+-++|+|++..- ...+.+...+..-.++.-|++|++-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 011111111110 0001111222 22333333 356678889998753 3444554444322233334444444
Q ss_pred hhhhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1116 LDVCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1116 ~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
+.+.... .-...+++.+++.++..+.+.+........ .....++..++|.|..+..
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIA 220 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHH
Confidence 4443322 223688999999999999998764321111 1135688999999965544
No 366
>PRK07261 topology modulation protein; Provisional
Probab=95.14 E-value=0.046 Score=59.51 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999854
No 367
>PRK07261 topology modulation protein; Provisional
Probab=95.12 E-value=0.064 Score=58.42 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 368
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.11 E-value=0.077 Score=63.69 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=60.8
Q ss_pred HHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecC-CCCHHHHHHHHHHHhccCCCCccCHH-
Q 000202 990 IFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSR-YWNTRKIQKQVLRQLSLHCKDRETDA- 1065 (1866)
Q Consensus 990 i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~- 1065 (1866)
+++.+.- ..-..+.|+|..|+|||||++.+.+.-... +=+. ++|+.+.+ +..+.++.+.+...+.....+.....
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~ 201 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEH 201 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHH
Confidence 4555521 233467999999999999999985422111 1123 45666554 46788999999887765443322221
Q ss_pred -H---HHHHHHHHh--CCCcEEEEEeCCCC
Q 000202 1066 -Q---VAEKLWQVL--NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 -~---~~~~l~~~L--~~kr~LlVlDdv~~ 1089 (1866)
. ....+.+++ ++++++||+|++..
T Consensus 202 ~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 202 IRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 112222233 68999999999854
No 369
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.19 Score=65.60 Aligned_cols=191 Identities=9% Similarity=0.020 Sum_probs=96.4
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..++|.+.-++.+.+.+...+.. .+-++|..|+||||+|+.+.+.-.-....+ ..+++.-...+.|...-.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 334667777777788888666654 567999999999999999854321111000 001111111111111000
Q ss_pred cC-----CCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEcc-CChhhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMAS-RELDVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~ 1122 (1866)
.+ .......++. ..+.+. ..+++-++|+|++..- ...+.+...+........+|++| ....+....
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 0000111111 112221 1345557889998753 34555554443333455665544 444443221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
.-...+++++++.++....+...+......- -.+....|++.++|.. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235778889999888777766543221111 1234566888888865 344333
No 370
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.02 Score=58.79 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEG 239 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~ 239 (1866)
..-|+|.||+|+||||+++.+++.++.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 3458999999999999999999977765 643
No 371
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.08 E-value=0.075 Score=65.00 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666544444568999999999999999999987766545566664
No 372
>PRK04296 thymidine kinase; Provisional
Probab=95.06 E-value=0.039 Score=61.26 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=58.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchh--HHHHHHHh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNIS--VNFQSKRL 287 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~--~~~l~~~L 287 (1866)
.++.|+|..|.||||+|..++.+...+...++++. . .++...... .+.+.+............. ...+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 36789999999999999999998766544444442 1 101111111 1222221111000000100 012222 2
Q ss_pred hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 288 ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++.+
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23556899999963 454554444322 35789999999854
No 373
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.04 E-value=0.22 Score=54.78 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred cccCCCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEG 239 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (1866)
+.....++|.|...+.+.+--.. .+-...-|.+||--|.|||.|++++.+.+....-.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 34456799999888877653321 12234458899999999999999999988877654
No 374
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.23 Score=59.91 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh-hhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD-VCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++-++|+|+++. ....+.+...+..-..++.+|+||.+.+ +..... -...+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3344456799985 3445555554443335677777776653 332211 13678999999999998887654211
Q ss_pred chHHHHHHHHHHHcCCChHHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
..+.+..++..++|-|+.+..+
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233456788999999755443
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.00 E-value=0.37 Score=60.11 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.2
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999876654
No 376
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.00 E-value=0.02 Score=59.93 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=33.3
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
||....++++.+.+..-......|.|+|..|+||+++|+.+++.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777888877776543445578999999999999999888743
No 377
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.00 E-value=0.014 Score=65.14 Aligned_cols=39 Identities=33% Similarity=0.306 Sum_probs=22.7
Q ss_pred cCCCCCcEEEccCCCCCcCC----hhhcCCCccceeccccccc
Q 000202 1466 GSLECLEVLDLRGTEIKMLP----KEIGKLTSLRYLTVFFFGS 1504 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i~~lp----~~i~~L~~L~~L~l~~~~~ 1504 (1866)
..|.+|..|++..|..+.+- ..+.-+++|.+|+-..+..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 34455666666666555432 1255677888887765543
No 378
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.39 Score=52.55 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=79.7
Q ss_pred CceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccH
Q 000202 187 DLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
+.=|.+-..+++.+.... +-+..+-|.++|++|.|||.||+++++.....| +.+++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH-------
Confidence 444566666666554431 224567799999999999999999999765544 444443
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----------------HHHHHhhccCCCC--C
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----------------QIELLIGRLDRFA--S 317 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~ 317 (1866)
++..+.+++.+ .......+-.-.+-+-.|.+|.|+... .+-.++.....|. .
T Consensus 224 -----efvqkylgegp-----rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 224 -----EFVQKYLGEGP-----RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -----HHHHHHhccCc-----HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 22333333332 111122222234567888899886411 1223333334333 3
Q ss_pred CCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhh
Q 000202 318 GSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQC 357 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 357 (1866)
..+||..|...+.+.- -..+.-++.+--+..+-.-.|...
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 5577776654332211 112445666644555555555443
No 379
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.96 E-value=0.11 Score=67.18 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=37.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..+++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999998876543 3346789999999999999999874
No 380
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.94 E-value=0.098 Score=69.79 Aligned_cols=151 Identities=14% Similarity=0.189 Sum_probs=82.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---ccccc-cceEEEEEecCCCCHHHHHHHHHHHh
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVM-FHVIIWVTVSRYWNTRKIQKQVLRQL 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~~~~~i~~~l 1054 (1866)
...||++++.+++..|......-+.++|.+|+|||++|+.++..- .+... .++.+|.. +...+ +
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l-------l 254 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL-------L 254 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-------h
Confidence 356888999999998866544556799999999999999985421 11111 23444421 11111 1
Q ss_pred ccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cchhhhcCCCCCCCCCcEEEEccCChh------
Q 000202 1055 SLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ----------IDLEAVGIPVPGSENGSKIFMASRELD------ 1117 (1866)
Q Consensus 1055 ~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IivTTR~~~------ 1117 (1866)
.. ..-..+.+.....+.+.+ +....+|++|++... .+...+..++...+ .-+||-+|....
T Consensus 255 aG-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 255 AG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred cc-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhh
Confidence 00 011112222223333333 346789999999731 11222222222211 234444444333
Q ss_pred ----hhccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1118 ----VCRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1118 ----v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
+.+.+ ..+.++.++.++..+++....
T Consensus 333 ~D~AL~rRF---q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 333 KDRALARRF---QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ccHHHHhhC---cEEEeCCCCHHHHHHHHHHHH
Confidence 22222 478999999999999987544
No 381
>PHA00729 NTP-binding motif containing protein
Probab=94.93 E-value=0.054 Score=60.54 Aligned_cols=86 Identities=28% Similarity=0.307 Sum_probs=0.0
Q ss_pred EEEEecCCCchhHHHHHHHHhhh-------------ccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccch
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKIS-------------RHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNI 278 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~-------------~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 278 (1866)
|.|+|.+|+||||||.++++++. .....+.|+. ..++...+-......
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid----------~~~Ll~~L~~a~~~~--------- 80 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFE----------LPDALEKIQDAIDND--------- 80 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEE----------HHHHHHHHHHHHhcC---------
Q ss_pred hHHHHHHHhhcCcEEEEEec--------CCCHHHHHHHhhccCCCCCCCEEEEEcc
Q 000202 279 SVNFQSKRLARKKVLIVFDD--------VNHPRQIELLIGRLDRFASGSQVIITTR 326 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~LlVlDd--------v~~~~~~~~l~~~~~~~~~gs~IiiTTR 326 (1866)
.+.=|||+|| .|..+....+....+-..+.+.+++.+|
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ 126 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTT 126 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEec
No 382
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.90 E-value=0.2 Score=67.46 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 186 KDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+.+|.+...+.+.++|.. +.....++.++|.+|+||||+|+.++......|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999988889888763 112345799999999999999999998665544
No 383
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.11 Score=61.63 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=57.9
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc-cccc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN-DRNV 272 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~ 272 (1866)
-+.++...|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+. ++ ++....++. ...+.- ..+.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE--ES~~QiklR---A~RL~~~~~~l 149 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE--ESLQQIKLR---ADRLGLPTNNL 149 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC--cCHHHHHHH---HHHhCCCccce
Confidence 45666777764433355899999999999999999999988776 666764 33 221111111 122221 1111
Q ss_pred cCccchhHHHHHHHh-hcCcEEEEEecCC
Q 000202 273 KNFQNISVNFQSKRL-ARKKVLIVFDDVN 300 (1866)
Q Consensus 273 ~~~~~~~~~~l~~~L-~~k~~LlVlDdv~ 300 (1866)
.-......+.+.+.+ +.++-|+|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 112222233444444 4677899999885
No 384
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.90 E-value=0.12 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+|.+.|++|+||||+|+++.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987543
No 385
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.098 Score=68.25 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=84.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-cc-----ceEEEEeeccccccccHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FE-----GSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~l 258 (1866)
.++.+||+.++..+.+.|.....+-. .++|.+|+|||++|.-++.++... -+ ..++-.+.+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~---------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS---------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----------
Confidence 45799999999999999986543332 478999999999999999977543 11 1222111111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC-----------HHHHHHHhhccCCCCCCCEEEEEccc
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH-----------PRQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
-..+..-..+++......+.+.-+.+++.|++|.+.. .+.-+.+.+.+.. |.--.|=.||-+
T Consensus 237 ------LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~ 309 (786)
T COG0542 237 ------LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLD 309 (786)
T ss_pred ------HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHH
Confidence 1111111112222222333333345589999999853 1122334444332 222234456654
Q ss_pred cch---hcc---CccceeeecCCCCHHHHHHHHHh
Q 000202 328 KQV---LTN---CEVDHIYQMKELVHADAHKLFTQ 356 (1866)
Q Consensus 328 ~~v---~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 356 (1866)
+-- -+. ....+.+.|...+.+++...+..
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 311 110 01245677888888888777763
No 386
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.87 E-value=0.054 Score=59.52 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999998887777777763
No 387
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.072 Score=61.79 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 344589999999999999999999887432334444
No 388
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.28 Score=59.95 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998754
No 389
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.84 E-value=0.43 Score=62.12 Aligned_cols=188 Identities=12% Similarity=0.017 Sum_probs=98.1
Q ss_pred ccccchhhHHHHHHHHHhccCCcc-EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTAS-KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~-vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..++|.+.-++.+.+++...+.+ .+-++|..|+||||+|+.+...-.-...- ...+++.-...+.|.....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~-------~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP-------DGEPCNECEICKAITNGSL 87 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCccHHHHHHhcCCC
Confidence 335667777777788888655544 46789999999999999884321100000 0111222222222221111
Q ss_pred cC-----CCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEcc-CChhhhccC
Q 000202 1056 LH-----CKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMAS-RELDVCRNM 1122 (1866)
Q Consensus 1056 ~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~ 1122 (1866)
.+ .......+++ ..+.+. ..+++-++|+|++.. ...+..+...+........+|++| ....+....
T Consensus 88 ~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 10 0001111111 122222 245666888999975 345666655444333344555444 433332221
Q ss_pred -CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1123 -DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1123 -~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.....+++.+++.++....+...+......- -.+.+..|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1135688899999988888876654221111 1244667888888877543
No 390
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.84 E-value=0.096 Score=61.44 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|+++|.+|+||||++..++......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876554
No 391
>PRK08116 hypothetical protein; Validated
Probab=94.82 E-value=0.058 Score=63.20 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=56.7
Q ss_pred EEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhh---hhhhhccCeEEEEEEccC
Q 000202 712 LPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRA---ENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 712 i~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~---~~~~~~~~r~LlVlddv~ 788 (1866)
+=++|..|.|||.||..+++.-.-+ -...++++ ..+++..|...+...... .......+-=||||||+-
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEeccc
Confidence 5689999999999999999764322 22345553 445666655544321110 111112222389999995
Q ss_pred CCChHHHH--HHHHhcccCCCCCcEEEEecCCh
Q 000202 789 DIDDEELH--NFRLLISNMRDSGSCFLVTTHSH 819 (1866)
Q Consensus 789 ~~~~~~w~--~~~~~l~~~~~~gs~iivttr~~ 819 (1866)
.+...+|. .+...+...-.+|..+|+||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 43333443 35544432223567788888653
No 392
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.81 E-value=0.11 Score=68.97 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=70.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
+-|.|+|.+|+|||++|+.++.+....| +..... .+... ..+.. .......+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f-----~~is~~--------~~~~~----~~g~~-----~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF-----FTISGS--------DFVEM----FVGVG-----ASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE-----EEEehH--------HhHHh----hhccc-----HHHHHHHHHHHHhc
Confidence 3489999999999999999988765443 211111 01100 00000 00011222223345
Q ss_pred CcEEEEEecCCCH----------------HHHHHHhhccCCCCC--CCEEEEEccccchhccC-----ccceeeecCCCC
Q 000202 290 KKVLIVFDDVNHP----------------RQIELLIGRLDRFAS--GSQVIITTRDKQVLTNC-----EVDHIYQMKELV 346 (1866)
Q Consensus 290 k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~ 346 (1866)
.+++|+||+++.. ..+..++..+..+.. +.-||.||...+.+... ..+..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 6789999998653 123344433333322 34455577665543321 125677888888
Q ss_pred HHHHHHHHHhhc
Q 000202 347 HADAHKLFTQCA 358 (1866)
Q Consensus 347 ~~ea~~Lf~~~a 358 (1866)
.++-.+++..+.
T Consensus 324 ~~~R~~Il~~~~ 335 (644)
T PRK10733 324 VRGREQILKVHM 335 (644)
T ss_pred HHHHHHHHHHHh
Confidence 888888887766
No 393
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.14 Score=64.33 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=83.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC--CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY--WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+-|-+.|..|+|||+||++++++.. +...-.+.+|+++.- ..+..+++.+- ..+.+.+..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEALWY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHHhh
Confidence 4588999999999999999987666 444444556666542 33444444432 233455667
Q ss_pred CcEEEEEeCCCCc--------cchhh----hcCCC-----CCCCCCcEE--EEccCChhhhcc-----CCCCcEEEecCC
Q 000202 1078 EKFLLLLDDVWEQ--------IDLEA----VGIPV-----PGSENGSKI--FMASRELDVCRN-----MDVNMVVKLETL 1133 (1866)
Q Consensus 1078 kr~LlVlDdv~~~--------~~~~~----l~~~l-----~~~~~gs~I--ivTTR~~~v~~~-----~~~~~~~~l~~L 1133 (1866)
..-+|||||++.. .+|.. +...+ .....+.+| |.|..+..-... .-...+..+..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 7889999999631 22321 11111 012234443 333333222111 112346788888
Q ss_pred ChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1134 SMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1134 ~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
...+-.++++...........+.+ ..-+..+|+|.
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~d-Ld~ls~~TEGy 608 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDD-LDFLSVKTEGY 608 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHH-HHHHHHhcCCc
Confidence 888877777665433321111222 22377788874
No 394
>PRK06696 uridine kinase; Validated
Probab=94.73 E-value=0.033 Score=63.72 Aligned_cols=45 Identities=29% Similarity=0.328 Sum_probs=35.0
Q ss_pred ehhhHHHHHHhhhc-CCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 191 VEWRIKEIESLLRT-GSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 191 r~~~l~~l~~~L~~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
|...+++|.+.+.. ......+|+|.|.+|+||||||++++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55666666666643 3446789999999999999999999987754
No 395
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.57 Score=59.77 Aligned_cols=189 Identities=21% Similarity=0.242 Sum_probs=98.1
Q ss_pred CceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHH
Q 000202 187 DLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 256 (1866)
+.=|.++-..+|.+-+.. +-..+.-|.++|++|.|||-||++|+.+.+-.| +.+-+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVKGP-------- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVKGP-------- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----EeecCH--------
Confidence 344555555556554432 222345689999999999999999998765544 332222
Q ss_pred HHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---------------HHHHHHhhccCCCCC----
Q 000202 257 DLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---------------RQIELLIGRLDRFAS---- 317 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---------------~~~~~l~~~~~~~~~---- 317 (1866)
+++....++.. ...++...+.-.-+++.|.||.+++. ..+..++..+.....
T Consensus 740 ----ELLNMYVGqSE-----~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 740 ----ELLNMYVGQSE-----ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred ----HHHHHHhcchH-----HHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 34444433322 11123333334568999999999861 123344444433222
Q ss_pred CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHH-HHh--hcCCCCCCChhHHHHHHHHHHHhCCCcceeeee
Q 000202 318 GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKL-FTQ--CAFRGDHLDAGYTELAHKALKYAQGVPLALKVL 389 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~L-f~~--~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~ 389 (1866)
+-=||=.|..++++... .-++.+.|++=+.+|+..= +.. +-|+-+ .+-+ ..+|+++|.- ..-
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVd----L~eiAk~cp~-----~~T 880 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVD----LVEIAKKCPP-----NMT 880 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcC----HHHHHhhCCc-----CCc
Confidence 22344444444443321 2256677877776665432 211 112111 1112 3556666653 234
Q ss_pred cccccCCCHHHHHHHHHH
Q 000202 390 GCYLCGRSKEEWESAMRK 407 (1866)
Q Consensus 390 g~~L~~~~~~~w~~~l~~ 407 (1866)
|+-|+.---+.|.+++.+
T Consensus 881 GADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 881 GADLYSLCSDAMLAAIKR 898 (953)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455554444667666654
No 396
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.71 E-value=0.18 Score=68.72 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=39.1
Q ss_pred CceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 187 DLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+|.+...+.+.+++.. +.....++.++|.+|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 577888888888776642 222334789999999999999999999875544
No 397
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.56 E-value=0.0065 Score=79.04 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=44.2
Q ss_pred cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhh
Q 000202 1660 YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMI 1739 (1866)
Q Consensus 1660 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l 1739 (1866)
.+++|+.|+++.|..+...+-.. ....+++|+.|.+.+|..++..-...+ ...+|+|++|+|+.|..++.......+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~--l~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSA--LASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hcCCcCccchhhhhccCchhHHH--HHhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHH
Confidence 34666666666666544433221 122356666666666655443111011 114566777777777665443222234
Q ss_pred hhccccceeeeccc
Q 000202 1740 QFLAKLEELTVEYC 1753 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C 1753 (1866)
.++++|+.|.+..+
T Consensus 318 ~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 318 KNCPNLRELKLLSL 331 (482)
T ss_pred HhCcchhhhhhhhc
Confidence 44555555444433
No 398
>PRK07667 uridine kinase; Provisional
Probab=94.48 E-value=0.062 Score=59.88 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
++++...+........+|||.|.+|+||||+|..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34455556555556789999999999999999999987654
No 399
>PRK08181 transposase; Validated
Probab=94.48 E-value=0.75 Score=53.73 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=51.3
Q ss_pred EEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCCC
Q 000202 711 ILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCDI 790 (1866)
Q Consensus 711 Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~~ 790 (1866)
-+-++|+.|.|||.||..+-+.. .+......++. ..+++..+...............+.+-=||||||+-..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 37899999999999999887432 22222334443 33444444322111111111122234449999999643
Q ss_pred ChHHH--HHHHHhcccCCCCCcEEEEecCC
Q 000202 791 DDEEL--HNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 791 ~~~~w--~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
...+| ..+...+...-.++ .+|+||..
T Consensus 180 ~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~ 208 (269)
T PRK08181 180 TKDQAETSVLFELISARYERR-SILITANQ 208 (269)
T ss_pred cCCHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 32222 23444443222234 47777764
No 400
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.46 E-value=0.091 Score=63.71 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
+.++|....+.++.+.+..-......|.|+|..|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4699999999998888875444455689999999999999999875
No 401
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.6 Score=52.71 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCceeehhhHHHHHHhhh----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLR----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+..|.+...+.|.+..- ......+-|.++|++|.||+-||++|+.+.-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 467788887777776442 1223367799999999999999999998653
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.48 Score=57.13 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|+|+|.+|+||||++..++.....+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 35789999999999999999999866543
No 403
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.11 Score=57.96 Aligned_cols=54 Identities=33% Similarity=0.392 Sum_probs=41.4
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
..+.=|-+..+++|.+.... +-...+-|.++|.+|.|||-||++|+|+.+..|-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 34566788888888876642 1234566889999999999999999998777663
No 404
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.39 E-value=0.13 Score=54.17 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=56.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+++|.|..|.|||||++.++..... ..+.+++........... ........-.+.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHh
Confidence 347999999999999999999875432 345555532111000000 0011112233445566
Q ss_pred cCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhc
Q 000202 289 RKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 289 ~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 332 (1866)
.++-++++|+.. |....+.+...+... +..||++|.+...+.
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 677788999874 333333333332222 246888887765543
No 405
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.22 Score=63.25 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.+-.|.+.-.++|.++|.- ..-.-.+++++|++|+|||.|++.+++.....|-... +-.++. ++
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrD--EA--------- 390 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRD--EA--------- 390 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCcccc--HH---------
Confidence 3667888888888888862 2223468999999999999999999998877763221 111111 10
Q ss_pred HHHHHhccccccCccchhHHHHHH--HhhcCcEEEEEecCCCHH------HHHHHhhccCC-----CC--------CCCE
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSK--RLARKKVLIVFDDVNHPR------QIELLIGRLDR-----FA--------SGSQ 320 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~--~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~-----~~--------~gs~ 320 (1866)
++-+... .-+.......++. ..+.++-|++||.|+... --.+++..+.. |. -=|.
T Consensus 391 ---EIRGHRR-TYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 391 ---EIRGHRR-TYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ---Hhccccc-cccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 0111110 1111222222222 235577899999997411 11122222110 00 1244
Q ss_pred EE-EEcccc-c-h-hccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 321 VI-ITTRDK-Q-V-LTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 321 Ii-iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
|+ |+|-|. + + ..-.+...++++.+-+++|-.+.-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 444432 1 1 1122446789999999999988888776
No 406
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.28 E-value=0.15 Score=64.47 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=38.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677777655455678999999999999999999886655434566764
No 407
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.28 E-value=0.17 Score=55.74 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=61.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc-ccH---HHHHHHHHHHHhcccc----ccCcc--ch
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET-GRL---DDLRKELLSKLLNDRN----VKNFQ--NI 278 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~---~~l~~~ll~~~~~~~~----~~~~~--~~ 278 (1866)
-.+++|.|..|.|||||++.++-.... ..+.+++....-.... ... .....+++..+.-... ..... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 347999999999999999999875433 4555655321110000 000 1111112222211110 00111 11
Q ss_pred hHHHHHHHhhcCcEEEEEecCC---CHHHHHHHhhccCCC-CC-CCEEEEEccccchh
Q 000202 279 SVNFQSKRLARKKVLIVFDDVN---HPRQIELLIGRLDRF-AS-GSQVIITTRDKQVL 331 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IiiTTR~~~v~ 331 (1866)
..-.+.+.+...+-++++|+.- |....+.+...+... .. |..||++|.+...+
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1134445567788889999874 333333333322221 12 66788888877654
No 408
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.28 E-value=0.11 Score=58.92 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=34.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQK 1048 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 1048 (1866)
-+++.|+|.+|+|||+++.++... ....-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 468999999999999999988432 222346788998875 66555444
No 409
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.28 E-value=0.11 Score=60.68 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=61.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK 273 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 273 (1866)
.++.+..++.. ...+|.|.|..|.||||++.++.+.+...-...+.+.+..+..... + .++.-. .
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~----~-----~q~~v~---~ 132 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG----I-----NQVQVN---E 132 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC----c-----eEEEeC---C
Confidence 34445555543 2347999999999999999998886644222344444433321110 0 000000 0
Q ss_pred CccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhc
Q 000202 274 NFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGR 311 (1866)
Q Consensus 274 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~ 311 (1866)
.......+.++..|+..+=.|+++++.+.+....+...
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 11112336778888889999999999998876655544
No 410
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.62 Score=60.60 Aligned_cols=180 Identities=12% Similarity=0.160 Sum_probs=106.9
Q ss_pred ccCCcccccchhhHHHHHHHHHhccC------C---ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCC
Q 000202 972 LGTSNVTAVNYTQRNVRKIFRYVNDV------T---ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~i~~~l~~~------~---~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 1042 (1866)
+...++.|...-++|+.+++++|.++ + .+=+-++|++|.|||-||++++-...+. |++++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH--
Confidence 34567777777788999999999543 1 2337799999999999999996533332 3344321
Q ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHHHH-HhCCCcEEEEEeCCCCc-----------------cchhhhcCCCCCCC
Q 000202 1043 TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ-VLNGEKFLLLLDDVWEQ-----------------IDLEAVGIPVPGSE 1104 (1866)
Q Consensus 1043 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~-----------------~~~~~l~~~l~~~~ 1104 (1866)
++ .+.+.... ...+..+.. .=....+.|.+|+++.. .-++++...+....
T Consensus 379 --EF----vE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 --EF----VEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred --HH----HHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 11 11111100 111111222 22346788888887631 11334433333333
Q ss_pred CCc--EEEEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHH
Q 000202 1105 NGS--KIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLT 1173 (1866)
Q Consensus 1105 ~gs--~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi 1173 (1866)
.++ -++-+|+..++... -..+..+.+..-+.....++|..|+.......+..++++ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 333 23345666666322 234678888888899999999999876655455666777 888888877443
No 411
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.27 Score=63.74 Aligned_cols=130 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL 287 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L 287 (1866)
..+.+.++|++|.|||.||+++++.....|-... .. .++++..++. ............
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~-----~~------------~l~sk~vGes-----ek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK-----GS------------ELLSKWVGES-----EKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee-----CH------------HHhccccchH-----HHHHHHHHHHHH
Confidence 4567899999999999999999996655543211 11 1111111111 111112233334
Q ss_pred hcCcEEEEEecCCCH-------------HHHHHHhhccCCCCCCCE--EEEEccccchhccC-----ccceeeecCCCCH
Q 000202 288 ARKKVLIVFDDVNHP-------------RQIELLIGRLDRFASGSQ--VIITTRDKQVLTNC-----EVDHIYQMKELVH 347 (1866)
Q Consensus 288 ~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~--IiiTTR~~~v~~~~-----~~~~~~~l~~L~~ 347 (1866)
+..++.|.+|.++.. .....++..+......+. ||-||-....+... .-+..+.++.-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678899999999631 234455555443333333 44455444433311 2356888999999
Q ss_pred HHHHHHHHhhcC
Q 000202 348 ADAHKLFTQCAF 359 (1866)
Q Consensus 348 ~ea~~Lf~~~a~ 359 (1866)
++..+.|..+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998884
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.48 Score=59.31 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=26.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh--ccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS--RHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 244 (1866)
.++++++|.+|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45899999999999999999987665 2223344443
No 413
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.15 E-value=0.26 Score=56.99 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
..|-++|..+-+.-.++.|+|.+|+|||+||.++......+=..++|+..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 44555665554556789999999999999999997654334456667663
No 414
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.02 E-value=0.19 Score=55.79 Aligned_cols=33 Identities=24% Similarity=0.098 Sum_probs=26.4
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.|.|.+|+|||+||.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886554445666765
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.98 E-value=0.8 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++.++|.+|+||||+|..++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998754
No 416
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.18 Score=63.44 Aligned_cols=52 Identities=31% Similarity=0.403 Sum_probs=42.9
Q ss_pred CCceeehhhHHHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 186 KDLIGVEWRIKEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
++-.|+++-.+.+.+++. .++..-.++..+|++|||||.+|+.++...-..|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 366899888888888886 3445577999999999999999999999776665
No 417
>PRK09183 transposase/IS protein; Provisional
Probab=93.94 E-value=0.85 Score=53.27 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=48.9
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhh-hhccCeEEEEEEccC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENM-ADLSERLLVVLDDVC 788 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~-~~~~~r~LlVlddv~ 788 (1866)
..+-|+|+.|+|||+||..+.+... ..... ..++ +..+++..+-.+.......... ....+.-++|+||+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~-v~~~------~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg 174 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV-RAGIK-VRFT------TAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIG 174 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-HcCCe-EEEE------eHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccc
Confidence 3455999999999999999864322 11222 1222 2333333332211110000001 112233489999998
Q ss_pred CCChHHHH--HHHHhcccCCCCCcEEEEecCC
Q 000202 789 DIDDEELH--NFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~~~~~~w~--~~~~~l~~~~~~gs~iivttr~ 818 (1866)
......|. .+...+...-.+|+ +|+||..
T Consensus 175 ~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 175 YLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred cCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 64333333 34444432223455 6777654
No 418
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.90 E-value=0.8 Score=51.53 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=105.1
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEEeecc-cc--------
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFACNVRA-AE-------- 250 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~-~~-------- 250 (1866)
..+.++++.-.++.++... .+..-..++|+.|.||-|.+..+.+++.+ +-+...|...+.. ..
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 3466777777777776652 24556789999999999999998886543 1233444433222 00
Q ss_pred -------c-cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcE-EEEEecCCC--HHHHHHHhhccCCCCCCC
Q 000202 251 -------E-TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKV-LIVFDDVNH--PRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 251 -------~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~--~~~~~~l~~~~~~~~~gs 319 (1866)
. ....+-+.++++.++...... .. -..+.| ++|+-.+++ .+.-.++........+.+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qi-----------e~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcch-----------hh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 001133344444443322220 00 011233 566666663 334455666666667788
Q ss_pred EEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 320 QVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 320 ~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
|+|+...+-. +.... ...-.+.+...+++|-...+++.+-+..-.. ..+++.+|+++++|+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRN 221 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhccc
Confidence 9888543221 11111 1235678999999999999988774443222 268899999999886
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=93.88 E-value=0.89 Score=56.69 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+|.++|.+|+||||+|..++..+..+....+.+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV 135 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV 135 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3678999999999999999999887665533334443
No 420
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.88 E-value=0.21 Score=57.33 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=31.4
Q ss_pred HHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 198 IESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 198 l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
+.+.+..+-+.-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 33444333334558999999999999999887775533334566665
No 421
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.85 E-value=0.13 Score=58.99 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
-.++.|+|.+|+|||++|.++.... ...-..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 4588999999999999999985322 1223577899877 5555444
No 422
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.83 E-value=2.6 Score=47.96 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=40.4
Q ss_pred EccCChhhhccCC--CCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1111 MASRELDVCRNMD--VNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1111 vTTR~~~v~~~~~--~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
-|||--.+..... ...+.+++.-+.+|-.+...+.+.--.. .--++-+.+|+++..|-|--
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHH
Confidence 4888655433221 2357788999999998888877642211 11234578899999999953
No 423
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.80 E-value=0.17 Score=57.48 Aligned_cols=145 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc-cccHHHHHHHHHHHHhcccc-----ccCcc--chhH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE-TGRLDDLRKELLSKLLNDRN-----VKNFQ--NISV 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~-----~~~~~--~~~~ 280 (1866)
-.++||+|..|+||||||+.+..-.... .+.+++..-.-... .....+...+++...+.... ..+.. ....
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 3479999999999999999999855443 34444432110000 11123334445554432221 11111 1222
Q ss_pred HHHHHHhhcCcEEEEEecCCC------HHHHHHHhhccCCCCCCCEEEEEccccchhccCcc--ceeeecCCCCHHHHHH
Q 000202 281 NFQSKRLARKKVLIVFDDVNH------PRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEV--DHIYQMKELVHADAHK 352 (1866)
Q Consensus 281 ~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~ 352 (1866)
-.+.+.|.-++=|+|.|..-+ ..++-.++..+.. ..|-..+..|-|-.++..+.. .-.|.-+-.+...+-+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 566777889999999998643 2344444433322 346678888888777765522 1122223334445556
Q ss_pred HHH
Q 000202 353 LFT 355 (1866)
Q Consensus 353 Lf~ 355 (1866)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 665
No 424
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.78 E-value=0.23 Score=62.91 Aligned_cols=130 Identities=12% Similarity=0.167 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||.+|+++.+.... .| +-+..+. +.. .. -..+...+.+.+...-...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~~------l~~--------~~-vGese~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVGK------LFG--------GI-VGESESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhHH------hcc--------cc-cChHHHHHHHHHHHHHhcC
Confidence 345889999999999999999553221 11 1122111 100 00 0011122222222222357
Q ss_pred cEEEEEeCCCCc----cc----------hhhhcCCCCCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQ----ID----------LEAVGIPVPGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~----~~----------~~~l~~~l~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~ 1139 (1866)
+++|++|+++.. .. ...+...+.....+--||.||...+. .+....+..+.+..-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 899999999741 00 00111111112233345567765542 222244678899999999999
Q ss_pred HHHHHHhcC
Q 000202 1140 ELFCKEVGG 1148 (1866)
Q Consensus 1140 ~Lf~~~~~~ 1148 (1866)
++|..+...
T Consensus 399 ~Il~~~l~~ 407 (489)
T CHL00195 399 KIFKIHLQK 407 (489)
T ss_pred HHHHHHHhh
Confidence 999877654
No 425
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.21 Score=56.86 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+..++|||.+|.|||-+|++|+..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 466799999999999999999999886665
No 426
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.76 E-value=0.27 Score=56.48 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------cceEEEEe
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFACN 245 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~ 245 (1866)
..|..+|..+-..-.++.|+|.+|+|||+||.+++....... ..++|+..
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 345555654444567899999999999999999987654444 45677764
No 427
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.75 E-value=0.21 Score=63.06 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 194 RIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666677654444668999999999999999999987654434566765
No 428
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.73 E-value=0.18 Score=54.56 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=24.2
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+.|.|.+|+|||++|.+++.. .....+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 679999999999999999865 2245666653
No 429
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.72 E-value=0.38 Score=53.66 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccC
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKN 274 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 274 (1866)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++. .+. .....+........
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~---~Aa~~L~~~~~~~a---- 70 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTN---KAAKELREKTGIEA---- 70 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSH---HHHHHHHHHHTS-E----
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcH---HHHHHHHHhhCcch----
Confidence 3445555543 3457889999999999999998886655422233332 111 12222222221100
Q ss_pred ccchhHHHHHHHh---------hcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 275 FQNISVNFQSKRL---------ARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 275 ~~~~~~~~l~~~L---------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
.... ..+...- ..++-+||+|++. +..++..+...... .|+++|+.--..+
T Consensus 71 -~Ti~-~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 71 -QTIH-SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp -EEHH-HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred -hhHH-HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 0000 0000000 2234599999997 56677777766543 5788888765443
No 430
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.72 E-value=0.22 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.64 E-value=1 Score=55.80 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999998866544
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.24 Score=54.01 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=62.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc---------cCccchh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV---------KNFQNIS 279 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---------~~~~~~~ 279 (1866)
-.+++|.|..|.|||||.+.++..... ..+.+++....- ... ........+ .-+...... .......
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~-~~~-~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDL-RDL-DLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEh-hhc-CHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 347999999999999999999875432 345555432110 000 000000000 000000000 0001111
Q ss_pred HHHHHHHhhcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 280 VNFQSKRLARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 280 ~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.-.+.+.+..++-++++|+.. |....+.+...+.....+..||+||.+...... .+.++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 123445566778899999875 333333332222222235678888888766643 3444443
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.62 E-value=0.047 Score=55.71 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
No 434
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.61 E-value=0.053 Score=55.94 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=20.6
Q ss_pred EEEEecCCCchhHHHHHHHHhh
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 435
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.59 E-value=0.15 Score=62.37 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=62.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE-eeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC-NVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
..|.|.|..|.||||+..++.+.+.......++.. +..+... ... ..+................++..|+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--------~~~-~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--------RNK-RSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--------cCc-cceEEccccCCCCcCHHHHHHHhhc
Confidence 57999999999999999999887765555554432 1111100 000 0000011100001112366778889
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
..+=.|++|.+.+.+.+....... ..|..|+.|.-...
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999999999988776644432 33555555554443
No 436
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.57 E-value=0.084 Score=55.60 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.+|-|.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57899999999999999999998877765555553
No 437
>PRK06217 hypothetical protein; Validated
Probab=93.50 E-value=0.23 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|.+|+||||+|+++..+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998653
No 438
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.49 E-value=0.045 Score=54.87 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccce
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGS 240 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (1866)
|.|+|.+|+||||+|++++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888888653
No 439
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.47 E-value=0.19 Score=59.73 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 195 IKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 195 l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
...|..+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+..
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 344555665 444556789999999999999999988766555566777763
No 440
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.42 E-value=0.25 Score=56.81 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
-.++.|+|.+|+|||+||.++........ .=..++|++....++...+. .+++...... ....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 45899999999999999998843221111 01457889887777765543 3333322110 1112344
Q ss_pred HHHHHHHHHhC----CCcEEEEEeCCCC
Q 000202 1066 QVAEKLWQVLN----GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 ~~~~~l~~~L~----~kr~LlVlDdv~~ 1089 (1866)
+....+.+... .+--|||+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 44444444432 3445888888753
No 441
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.42 E-value=0.14 Score=55.46 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLAR 289 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~ 289 (1866)
.+++|.|..|.|||||.+.++-.... ..+.+++....- .. ...... ....+.-... ........-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~-~~-~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEV-SF-ASPRDA---RRAGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEC-Cc-CCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 47999999999999999999875432 345555532211 00 000010 0001110000 01111122344555667
Q ss_pred CcEEEEEecCC---CHHHHHHHhhccCCC-CCCCEEEEEccccchhc
Q 000202 290 KKVLIVFDDVN---HPRQIELLIGRLDRF-ASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 290 k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IiiTTR~~~v~~ 332 (1866)
++-++++|+.- |....+.+...+... ..|..||++|.+...+.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888999875 333333333222211 23667888888876443
No 442
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.40 E-value=0.058 Score=59.95 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=36.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHHHhccC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~ 1057 (1866)
++|.++|+.|+||||.+-.++.+...+ =..+..++.... ....+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 589999999999998887775433333 234455654322 34556677778877754
No 443
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.39 E-value=1.3 Score=52.94 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC-hhhhccCC-CCcEEEecCCChHHHHHHHHHHhcCCCCC
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE-LDVCRNMD-VNMVVKLETLSMKDAWELFCKEVGGIIQS 1152 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 1152 (1866)
+++=++|+|+++.- ..-+.+...+..-..++.+|++|.+ ..+..... -...+.+.+++.+++.+.+.+. + . .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~--~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-V--S 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-C--C
Confidence 45668889998752 3333444333333346666666664 34433222 1367889999999998887653 1 1 1
Q ss_pred chHHHHHHHHHHHcCCChHHHHHH
Q 000202 1153 PDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1153 ~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
...+..++..++|-|+.+..+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 122567899999999865443
No 444
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.39 E-value=0.29 Score=66.01 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=38.7
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..++|+...+..+.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 47999999999987777643334457899999999999999999874
No 445
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.36 E-value=0.17 Score=62.88 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=51.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcccccc---Cccc--hh-----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVK---NFQN--IS----- 279 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~--~~----- 279 (1866)
+.++|.|.+|+|||||+..++.....+.+.++-+...++ ......++.+++...-....... ..+. ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999998866655444444444444 23333455555544311111100 0000 00
Q ss_pred --HHHHHHHh---hcCcEEEEEecCCC
Q 000202 280 --VNFQSKRL---ARKKVLIVFDDVNH 301 (1866)
Q Consensus 280 --~~~l~~~L---~~k~~LlVlDdv~~ 301 (1866)
.-.+.+++ +++++||++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 02244454 67999999999964
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.35 E-value=0.13 Score=55.82 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=40.6
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
|....+.||-++-++.+.-.-..+ +..-+.|.||+|+||||=+..++++.-+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 344567999999998887665543 4566889999999999999999986543
No 447
>PRK12377 putative replication protein; Provisional
Probab=93.34 E-value=0.23 Score=57.12 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=56.4
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHH-hhhhhhhccCeEEEEEEcc
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIR-RAENMADLSERLLVVLDDV 787 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~-~~~~~~~~~~r~LlVlddv 787 (1866)
..-+-++|..|.|||.||..+.+.-. +.....++++++ +++..|-..+.... .......+.+-=||||||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 35678999999999999999987543 333334666554 44444433332111 1112223355569999999
Q ss_pred CCCC--hHHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 788 CDID--DEELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 788 ~~~~--~~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
-.+. .+..+.+...+...-.+.--+||||..
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5432 233344554443312223335667653
No 448
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.39 Score=61.22 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=91.9
Q ss_pred CCCceeehhhHHHHHHhh---hcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLL---RTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L---~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+..|.|+..+++.+.+ .... .-++-|.++|++|.|||.||++++-+..--| +..++.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~iSGS------ 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGS------ 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----eeccch------
Confidence 456788887776665544 4221 2255689999999999999999998643333 111111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC----------------HHHHHHHhhccCCCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH----------------PRQIELLIGRLDRFASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~----------------~~~~~~l~~~~~~~~~g 318 (1866)
.......+.. .....+...+..++-++.|++|.++. ...+..++.....|+.+
T Consensus 218 ------~FVemfVGvG-----AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ------DFVEMFVGVG-----ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhcCCC-----cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 0000111110 11112333444566689999998863 12466677666666643
Q ss_pred CEEEE--EccccchhccC-----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 319 SQVII--TTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 319 s~Iii--TTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.-||| -|-.++|+... .-+..+.++..+...-.+.++-|+-+.. .....++ ..|++.+-|.-.
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~--l~~~Vdl-~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKP--LAEDVDL-KKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCC--CCCcCCH-HHHhhhCCCccc
Confidence 33333 33333443221 2244556666666666666665553221 1111111 226666666543
No 449
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.29 E-value=0.46 Score=55.60 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH---hhhccccceEEEEeeccccccccH------HHHHH
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN---KISRHFEGSYFACNVRAAEETGRL------DDLRK 260 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~------~~l~~ 260 (1866)
+|..+-.--..+|..+ ++..|.+.|.+|.|||-||.+..- ..+..|...+-....-.....-.+ .++.-
T Consensus 228 prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcC----------------cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEE
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARK----------------KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVI 322 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k----------------~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ii 322 (1866)
-+-.-.-.-.............+...+..+ +-+||+|.+.+ +.++..++.. .|+||||+
T Consensus 306 Wmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIV 382 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIV 382 (436)
T ss_pred hHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEE
Q ss_pred EE
Q 000202 323 IT 324 (1866)
Q Consensus 323 iT 324 (1866)
.|
T Consensus 383 l~ 384 (436)
T COG1875 383 LT 384 (436)
T ss_pred Ec
No 450
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.29 E-value=0.21 Score=59.40 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 196 KEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..|-.+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 44555665 44455678999999999999999998886655545566775
No 451
>PRK06526 transposase; Provisional
Probab=93.27 E-value=0.13 Score=59.57 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=49.8
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~ 789 (1866)
.-+-++|++|.|||+||+.+-.... +..+. ..++ ...+++..+...............+.+.-+||+||+-.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGY 170 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEccccc
Confidence 3467999999999999998764322 12222 1222 33344444322211100011111223445899999965
Q ss_pred CCh--HHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 790 IDD--EELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 790 ~~~--~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
... ..-..+...+...-.+++ +|+||..
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 322 222234444432223455 7777764
No 452
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=93.26 E-value=0.16 Score=58.70 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc-ceEEEEEecCC-CCHHHHHHHHHHHhccC-------CCCccCHH----
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF-HVIIWVTVSRY-WNTRKIQKQVLRQLSLH-------CKDRETDA---- 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 1065 (1866)
-+.++|.|-.|+|||||++.+++.. +.+| +.++++-+.+. ..+.++.+.+...=... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i--~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNI--AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHH--HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999996543 3344 34556666544 45566666665431111 11111111
Q ss_pred -HHHHHHHHHh---CCCcEEEEEeCCCC
Q 000202 1066 -QVAEKLWQVL---NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 -~~~~~l~~~L---~~kr~LlVlDdv~~ 1089 (1866)
...-.+.+++ +++.+|||+||+..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223344555 38999999999854
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.22 E-value=0.16 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
++.+.|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999876654
No 454
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.22 E-value=0.12 Score=56.87 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEE
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWV 1035 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 1035 (1866)
..+|.+.|+.|+||||+|+.+++ .....+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 45799999999999999999954 333344445554
No 455
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.21 E-value=0.41 Score=50.74 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhc---ccc-c--cCccchh----
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLN---DRN-V--KNFQNIS---- 279 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~---~~~-~--~~~~~~~---- 279 (1866)
..|-|++-.|.||||+|...+-+...+=-.+.++.-...... ..-...++.+ ..+.- ... . .......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWK-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCc-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 367888999999999999999876655334444332222101 1112222222 00000 000 0 0000000
Q ss_pred ---HHHHHHHhhcC-cEEEEEecCCCH-----HHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 280 ---VNFQSKRLARK-KVLIVFDDVNHP-----RQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 280 ---~~~l~~~L~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
-+..++.++.. -=|||||++-.. -..+.+...+..-.++..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 03334444444 459999998532 122223333333345789999999864
No 456
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.20 E-value=0.24 Score=53.71 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=61.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecc---ccccccH--HHHHHHHHHHHhccccccCccchhHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRA---AEETGRL--DDLRKELLSKLLNDRNVKNFQNISVNFQ 283 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~--~~l~~~ll~~~~~~~~~~~~~~~~~~~l 283 (1866)
-.+++|.|..|.|||||++.++-..... .+.+++...+. ......+ ..+.+.+... ............-.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 3479999999999999999998754322 33333321000 0000001 1222222110 011011111122344
Q ss_pred HHHhhcCcEEEEEecCC---CHHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 284 SKRLARKKVLIVFDDVN---HPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 284 ~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.+.+..++=++++|+.- |....+.+...+... +..||++|.+...... .++++.+
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 55566777888999874 333333333322222 3568888888765432 3445444
No 457
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.11 E-value=0.24 Score=60.09 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=35.5
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
+||....++++.+.+..-...-..|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 477888888877777654444456899999999999999998863
No 458
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.11 E-value=0.18 Score=58.27 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEe
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACN 245 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~ 245 (1866)
.|..+|..+-..-.++.|+|.+|+|||+||.+++...... -..++|+..
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 3445555444456789999999999999999998643222 256777764
No 459
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.09 E-value=0.033 Score=37.40 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=11.0
Q ss_pred CcEEEccCCCCCCCChhhcC
Q 000202 1424 LKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1424 L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
|++|||++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55556665555555554443
No 460
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.08 E-value=0.076 Score=59.32 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+|||.|.+|+||||+|+++...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999997764
No 461
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.01 E-value=0.33 Score=56.17 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQ 1047 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~ 1047 (1866)
-.++.|+|.+|+|||+||.+++........ -..++|++....++...+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 457899999999999999998532222221 3578899988777765443
No 462
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.94 E-value=0.23 Score=56.72 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 1042 (1866)
-+++.|.|.+|+||||+|.++.... ...=..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 4678999999999999999985322 12223567887655544
No 463
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.93 E-value=0.15 Score=55.35 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|.+|+||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998764
No 464
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.93 E-value=0.53 Score=51.77 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=61.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHh--cccc-----------ccCc-
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLL--NDRN-----------VKNF- 275 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~~~-----------~~~~- 275 (1866)
.+++|.|..|.|||||++.++-.... ..+.+++... . .......+...+. .... ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~------~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-P------VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-E------HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 47999999999999999999875432 2344444321 1 0000001111110 0000 0001
Q ss_pred -cchhHHHHHHHhhcCcEEEEEecCCC---HHHHHHHhhccCCCCCCCEEEEEccccchhccCccceeeec
Q 000202 276 -QNISVNFQSKRLARKKVLIVFDDVNH---PRQIELLIGRLDRFASGSQVIITTRDKQVLTNCEVDHIYQM 342 (1866)
Q Consensus 276 -~~~~~~~l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 342 (1866)
.....-.+.+.+..++=++++|+... ....+.+...+.....+..||++|.+...... .+.++.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11111334455667778889998753 33333332222222236778889988776643 3444443
No 465
>PRK09354 recA recombinase A; Provisional
Probab=92.91 E-value=0.28 Score=58.90 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 195 IKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 195 l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+..|..+|. .+=+.-+++-|+|.+|+||||||.+++......-..++|+..
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 344556666 444556789999999999999999998866555566777763
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.88 E-value=0.51 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+..|+|.||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999988654
No 467
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.87 E-value=0.21 Score=62.35 Aligned_cols=90 Identities=23% Similarity=0.318 Sum_probs=50.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCc---cc--hhH--
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNF---QN--ISV-- 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~--~~~-- 280 (1866)
-+.++|.|.+|+|||||+..+++....+. +.++|. ..++ ......++...+...-.......-. +. ...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 34689999999999999999998766443 444444 3433 2222344444444321111110000 00 000
Q ss_pred -----HHHHHHh--h-cCcEEEEEecCCC
Q 000202 281 -----NFQSKRL--A-RKKVLIVFDDVNH 301 (1866)
Q Consensus 281 -----~~l~~~L--~-~k~~LlVlDdv~~ 301 (1866)
-.+.+++ + ++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2334444 3 7899999999953
No 468
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.84 E-value=0.16 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.|.+.|++|+||||+|++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987654
No 469
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.83 E-value=0.29 Score=57.98 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=44.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
..+|+++|.+|+||||++..+..+...+ +.+ .+..|+.... ....+.+..-.+.++.......+..++...+. .+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 4589999999999999999886543332 222 3444554321 11222333334444433322334444444443 333
Q ss_pred CCcEEEEEeC
Q 000202 1077 GEKFLLLLDD 1086 (1866)
Q Consensus 1077 ~kr~LlVlDd 1086 (1866)
+ .=+|++|.
T Consensus 272 ~-~d~vliDt 280 (282)
T TIGR03499 272 D-KDLILIDT 280 (282)
T ss_pred C-CCEEEEeC
Confidence 3 34677775
No 470
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.83 E-value=0.18 Score=63.26 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=40.9
Q ss_pred CceeehhhHHHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 187 DLIGVEWRIKEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+++|.+..++.+.+.|. .-....+++.++|++|+||||||+.+++-+..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 68999999999999883 23345679999999999999999999985443
No 471
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.81 E-value=0.23 Score=54.12 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcC
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARK 290 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k 290 (1866)
+++|.|..|.|||||.+.++...... .+.+++....-.-..+... ........-.+.+.+..+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~----------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID----------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC----------------CCHHHHHHHHHHHHHhcC
Q ss_pred cEEEEEecCC---CHHHHHHHhhccCCCCC--CCEEEEEccccchhccCccceeeecCC
Q 000202 291 KVLIVFDDVN---HPRQIELLIGRLDRFAS--GSQVIITTRDKQVLTNCEVDHIYQMKE 344 (1866)
Q Consensus 291 ~~LlVlDdv~---~~~~~~~l~~~~~~~~~--gs~IiiTTR~~~v~~~~~~~~~~~l~~ 344 (1866)
+-++++|+.- |....+.+...+..... +..||++|.+...+... .+.++.+..
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~~ 147 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFEG 147 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEcC
No 472
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.78 E-value=0.79 Score=55.83 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
..+++++|..|+||||++..++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999998765443
No 473
>PRK05973 replicative DNA helicase; Provisional
Probab=92.76 E-value=0.44 Score=54.28 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3458999999999999999999886655444566664
No 474
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.75 E-value=0.23 Score=61.48 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=52.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccc-----cCccchhH---
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNV-----KNFQNISV--- 280 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~~~~~~--- 280 (1866)
-+.++|.|.+|+|||||+..++.....+...++.+...++ ......++.+++...-...... .+......
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999999876555444444444544 2233345555554321111100 00000000
Q ss_pred ----HHHHHHh---hcCcEEEEEecCCC
Q 000202 281 ----NFQSKRL---ARKKVLIVFDDVNH 301 (1866)
Q Consensus 281 ----~~l~~~L---~~k~~LlVlDdv~~ 301 (1866)
-.+.+++ +++++||++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2334455 46899999999964
No 475
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.74 E-value=0.077 Score=58.86 Aligned_cols=200 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcccCCccc-----------cCCCCCcEEEccCCCCC-c
Q 000202 1421 MTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFVLPPEV-----------GSLECLEVLDLRGTEIK-M 1483 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i-----------~~L~~L~~L~l~~~~i~-~ 1483 (1866)
|..+..++||+|.|. .+...|.+-.+|+..+++.-. ++..-+.+ -++++|+..+||.|.+. +
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Q ss_pred CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccc------cccccccCC
Q 000202 1484 LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVK------IVITEVSGL 1557 (1866)
Q Consensus 1484 lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~l 1557 (1866)
.|+.++.+ +++-+.|..|.++.|+..+.-...+. +......+.
T Consensus 108 ~~e~L~d~-------------------------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k 156 (388)
T COG5238 108 FPEELGDL-------------------------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK 156 (388)
T ss_pred cchHHHHH-------------------------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC
Q ss_pred CCCCEEEeecCCccchHHhhccCccccC-CcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHH
Q 000202 1558 TKLSSLSFHFPEIECVAEFLKGSAWNNQ-QLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQIL 1636 (1866)
Q Consensus 1558 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l 1636 (1866)
+.|+...+..|.+...+.-......... +|+.+.+..+. +-|..+..+
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-------------------------------Irpegv~~L 205 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-------------------------------IRPEGVTML 205 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-------------------------------cCcchhHHH
Q ss_pred HhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCccccccccccccccccc
Q 000202 1637 IHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHL 1700 (1866)
Q Consensus 1637 ~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~ 1700 (1866)
... ++.++.+|+.|+|....--..-..-........+.|+.|.+.+|
T Consensus 206 ~~~-----------------gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 206 AFL-----------------GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHH-----------------HHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
No 476
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.72 E-value=1.5 Score=53.34 Aligned_cols=68 Identities=7% Similarity=0.081 Sum_probs=43.1
Q ss_pred CCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccCC-CCcEEEecCCChHHHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNMD-VNMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
+.+=++|+|++..- ...+.+...+..-..++.+|++|.+.. +..... -...+++.+++.++..+.+.+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 44557888998753 344555555544445677777766533 332221 236889999999999887765
No 477
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.68 E-value=0.36 Score=63.16 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4468999999999998888754444456889999999999999999874
No 478
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.63 E-value=0.21 Score=62.41 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=50.5
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhH-----HHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISV-----NFQ 283 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~-----~~l 283 (1866)
..++|+|.+|+|||||+..+++.+.... +..+++..+++ -.....++.+.+-.++.............. -.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE--RpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE--RPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC--chhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999775533 44555655555 222233343332111111110000000000 123
Q ss_pred HHHh--hcCcEEEEEecCCCH
Q 000202 284 SKRL--ARKKVLIVFDDVNHP 302 (1866)
Q Consensus 284 ~~~L--~~k~~LlVlDdv~~~ 302 (1866)
.+++ .++.+||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 3444 678999999999643
No 479
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.61 E-value=1.7 Score=51.05 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
-+++++.++... ..|.++|.+|+|||+||+.+.. ... .....+++....+..++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHH
Confidence 344555555433 2467999999999999999954 221 12334555544444443
No 480
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.57 E-value=0.047 Score=36.67 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=10.7
Q ss_pred CcEEEccCCCCCcCChhhcC
Q 000202 1471 LEVLDLRGTEIKMLPKEIGK 1490 (1866)
Q Consensus 1471 L~~L~l~~~~i~~lp~~i~~ 1490 (1866)
|++||+++|.++.+|.++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55555555555555554443
No 481
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.57 E-value=0.7 Score=56.20 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHhccCCccEEEEEcCCCchHHHHH-HHHhcCcccccccceEEEEEecC---CCCHHHHHHHHHHHhccCC
Q 000202 983 TQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAAL-KALISYPEVKVMFHVIIWVTVSR---YWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 983 ~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~~~l~~~~ 1058 (1866)
|.+.++++-.||.+..-..|.|.|+-|.||+.|+ .++..+... +..+++.+ ..+...+++.++.++|.-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 3466788889998877789999999999999999 666543222 44444432 2344556666666664211
Q ss_pred -----------------------CC-ccC-HHHHH-------HHHHH-------------------HhC---CCcEEEEE
Q 000202 1059 -----------------------KD-RET-DAQVA-------EKLWQ-------------------VLN---GEKFLLLL 1084 (1866)
Q Consensus 1059 -----------------------~~-~~~-~~~~~-------~~l~~-------------------~L~---~kr~LlVl 1084 (1866)
.. ..+ ..++. ..|++ +|+ .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 011 11111 11221 111 23568999
Q ss_pred eCCCCc-----------cchhhhcCCCCCCCCCcEEEEccCChhhhc----cC--CCCcEEEecCCChHHHHHHHHHHhc
Q 000202 1085 DDVWEQ-----------IDLEAVGIPVPGSENGSKIFMASRELDVCR----NM--DVNMVVKLETLSMKDAWELFCKEVG 1147 (1866)
Q Consensus 1085 Ddv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~----~~--~~~~~~~l~~L~~~~a~~Lf~~~~~ 1147 (1866)
|+.-.. .+|.... .. .+=-.||++|-+..... .+ ...+.+.|...+.+.|.+....+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L---v~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL---VQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH---Hh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998642 2343322 11 23346787777654433 22 2346788999999999999988875
Q ss_pred CCCCC-------------------chHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHH
Q 000202 1148 GIIQS-------------------PDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVS 1187 (1866)
Q Consensus 1148 ~~~~~-------------------~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~ 1187 (1866)
..... .....-....+...||==.-+..+++.++...++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 43110 11223345677888998888888998888655544
No 482
>PRK03839 putative kinase; Provisional
Probab=92.47 E-value=0.091 Score=57.95 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 483
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.46 E-value=0.21 Score=58.03 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+..-+.++|.+|+|||.||.++.+.-- +..+ .+.++++ .++..++...... . ....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-
Confidence 445688999999999999999965443 3233 3445554 3455554443322 1 11122222222
Q ss_pred CcEEEEEeCCCC
Q 000202 1078 EKFLLLLDDVWE 1089 (1866)
Q Consensus 1078 kr~LlVlDdv~~ 1089 (1866)
+-=||||||+-.
T Consensus 167 ~~dlLIiDDlG~ 178 (254)
T COG1484 167 KVDLLIIDDIGY 178 (254)
T ss_pred cCCEEEEecccC
Confidence 233889999964
No 484
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.44 E-value=0.41 Score=62.03 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=42.1
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999998887655555679999999999999999998843
No 485
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.43 E-value=0.12 Score=56.95 Aligned_cols=30 Identities=33% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+.+|||.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999987755
No 486
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.49 Score=57.61 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=39.6
Q ss_pred CCcccccchhhHHHHHHHHHhccCC---------ccEEEEEcCCCchHHHHHHHHhcCcc
Q 000202 974 TSNVTAVNYTQRNVRKIFRYVNDVT---------ASKIGVYGVGGIGKTAALKALISYPE 1024 (1866)
Q Consensus 974 ~~~~~~~~~~~~~~~~i~~~l~~~~---------~~vi~I~G~gGvGKTtLa~~v~~~~~ 1024 (1866)
.+++-|...-+.|+++|+++|.++. .+=|.++|++|.|||-||++|.-...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4566667777789999999997641 23478999999999999999954433
No 487
>PTZ00301 uridine kinase; Provisional
Probab=92.42 E-value=0.1 Score=58.55 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=24.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
..+|||.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 488
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.38 E-value=0.37 Score=56.13 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh-----ccccceEEEEeeccccccccHHHHHH-------HHH
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS-----RHFEGSYFACNVRAAEETGRLDDLRK-------ELL 263 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~~~l~~-------~ll 263 (1866)
..|-++|..+-..-.++=|+|.+|+|||+||.+++-... ...++.+++.+....-....+..+.+ +++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l 104 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEIL 104 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhh
Q ss_pred HHHhccccccCccchhH--HHHHHHhhcCcE-EEEEecC
Q 000202 264 SKLLNDRNVKNFQNISV--NFQSKRLARKKV-LIVFDDV 299 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~--~~l~~~L~~k~~-LlVlDdv 299 (1866)
..+.-... ........ ..+...+.+.++ |||+|.+
T Consensus 105 ~~I~v~~~-~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 105 DNIFVIRV-FDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HTEEEEE--SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred hceeeeec-CCHHHHHHHHHHHHhhccccceEEEEecch
No 489
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=0.89 Score=55.89 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.6
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988654
No 490
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.37 E-value=3.8 Score=49.26 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=31.6
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCC-hhHHHHHHHHHHHhCCCcce
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLD-AGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLA 385 (1866)
+++|++++.+|+..++...+-.+--.. ...+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999987663322111 22344456666666999853
No 491
>PRK00625 shikimate kinase; Provisional
Probab=92.36 E-value=0.095 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|+||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 492
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=2.7 Score=46.58 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=94.3
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..+.=|-+..++++.+.+-. +-...+-|..+|++|.|||-+|++.+.+....|-. ..+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-----LAg------ 238 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-----LAG------ 238 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-----hcc------
Confidence 34555666666666654421 11235568899999999999999998876555421 101
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHH----hhcCcEEEEEecCCC-------------HH---HHHHHhhccC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR----LARKKVLIVFDDVNH-------------PR---QIELLIGRLD 313 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~-------------~~---~~~~l~~~~~ 313 (1866)
-++.....+... ..++.. -...+..|.+|.++- .+ ..-.++..+.
T Consensus 239 ------PQLVQMfIGdGA---------kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 239 ------PQLVQMFIGDGA---------KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred ------hHHHhhhhcchH---------HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 122222222111 111111 134578888898752 11 1233455555
Q ss_pred CCCCC--CEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCC-CCCChhHHHHHHHHHHHhCCCcce
Q 000202 314 RFASG--SQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRG-DHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 314 ~~~~g--s~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.|.+. -+||..|..-+++. .-..+.-++.+.-+++.-.+.+.-++-+- ..++-+++++++.--..-|---.|
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKA 383 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKA 383 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhee
Confidence 55554 45666665444432 21234556666666555555665555332 244556777665433222223344
Q ss_pred eeeecccc
Q 000202 386 LKVLGCYL 393 (1866)
Q Consensus 386 l~~~g~~L 393 (1866)
+-+=|+.+
T Consensus 384 VcVEAGMi 391 (424)
T KOG0652|consen 384 VCVEAGMI 391 (424)
T ss_pred eehhhhHH
Confidence 54545544
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.29 E-value=0.87 Score=53.95 Aligned_cols=36 Identities=14% Similarity=-0.110 Sum_probs=28.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (1866)
-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4478899999999999999998876544 34566664
No 494
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.28 E-value=0.8 Score=49.15 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 34678999999999999999875
No 495
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.26 E-value=0.1 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|.+|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 496
>PRK06921 hypothetical protein; Provisional
Probab=92.25 E-value=0.38 Score=56.32 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=53.1
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-.-+-++|..|+|||.||+.+.+.-. +++-...+++... +++..+...+.... .......+-=||||||+-
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~~------~l~~~l~~~~~~~~--~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPFV------EGFGDLKDDFDLLE--AKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEHH------HHHHHHHHHHHHHH--HHHHHhcCCCEEEEeccc
Confidence 35677999999999999999986432 2212334555432 33333322221111 111223344599999992
Q ss_pred C-----CChHHHH--HHHHhcccCCCCCcEEEEecCC
Q 000202 789 D-----IDDEELH--NFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~-----~~~~~w~--~~~~~l~~~~~~gs~iivttr~ 818 (1866)
. +...+|. .+...+...-.++..+|+||..
T Consensus 188 ~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 188 KPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred cccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2 2112443 3554443222234557777753
No 497
>PRK08233 hypothetical protein; Provisional
Probab=92.25 E-value=0.11 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998653
No 498
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.25 E-value=0.74 Score=65.09 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+-|.++|++|+|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346679999999999999999999864
No 499
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=92.23 E-value=3.7 Score=52.47 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred cCCCceeehhhHHHHHHhhhcC--C-CCcEEEEEEecCCCchhHHHHHHHHhhh-----ccccceEEEEeeccccccccH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG--S-AGVYKLGIWGIGGIGKTTIAGAVFNKIS-----RHFEGSYFACNVRAAEETGRL 255 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~--~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 255 (1866)
.+..+-+|+.+..+|+..+..- . ..-..+-|.|.+|+|||..+..|.+.+. ..-+...|+..-+- .-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm--~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL--RLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce--eecCH
Confidence 4567889999999999988731 1 2344788999999999999999998433 22233334432221 22234
Q ss_pred HHHHHHHHHHHhccccccCccchhHHHHHHHhh-----cCcEEEEEecCCC-----HHHHHHHhhccCCC-CCCCEEEEE
Q 000202 256 DDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA-----RKKVLIVFDDVNH-----PRQIELLIGRLDRF-ASGSQVIIT 324 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~-----~~~~~~l~~~~~~~-~~gs~IiiT 324 (1866)
..+...|...+.+... ......+.+..+.. .+.+++++|+++. .+.+-.| +.|- .++|+++|.
T Consensus 472 ~~~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEE
Confidence 6677777777665543 22223345555543 4678899998863 2223333 3332 468887765
Q ss_pred c
Q 000202 325 T 325 (1866)
Q Consensus 325 T 325 (1866)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
No 500
>PRK04040 adenylate kinase; Provisional
Probab=92.23 E-value=0.13 Score=56.95 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.8
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998774
Done!