Query 000202
Match_columns 1866
No_of_seqs 1318 out of 9629
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 00:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.8E-44 6.3E-49 382.7 11.0 172 8-179 28-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 6.8E-44 2.3E-48 373.9 11.2 169 12-182 5-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 4.5E-41 1.6E-45 436.5 18.8 303 982-1303 132-467 (549)
4 1vt4_I APAF-1 related killer D 100.0 5.8E-36 2E-40 385.3 18.1 283 981-1301 131-437 (1221)
5 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-32 6.6E-37 355.5 19.2 262 189-469 131-420 (549)
6 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-32 3.3E-36 389.6 26.9 304 979-1304 125-449 (1249)
7 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-29 8E-34 332.6 26.1 301 979-1303 125-448 (591)
8 1vt4_I APAF-1 related killer D 99.9 1.5E-28 5.1E-33 317.0 6.1 246 187-465 129-400 (1221)
9 3sfz_A APAF-1, apoptotic pepti 99.9 1.4E-27 4.8E-32 345.9 12.6 268 180-464 118-407 (1249)
10 3h16_A TIR protein; bacteria T 99.9 2.4E-27 8.3E-32 250.5 4.5 120 10-130 15-135 (154)
11 1z6t_A APAF-1, apoptotic prote 99.9 5.8E-26 2E-30 300.1 13.4 266 180-464 118-407 (591)
12 3vq2_A TLR4, TOLL-like recepto 99.9 4E-21 1.4E-25 255.4 25.9 412 1375-1813 32-537 (606)
13 4ecn_A Leucine-rich repeat pro 99.9 7.8E-21 2.7E-25 255.2 25.2 357 1368-1808 441-839 (876)
14 4eco_A Uncharacterized protein 99.9 2.5E-21 8.5E-26 256.8 18.5 138 1658-1809 453-600 (636)
15 3t6q_A CD180 antigen; protein- 99.9 1.1E-20 3.9E-25 251.0 23.2 407 1369-1807 51-534 (606)
16 3ub2_A TOLL/interleukin-1 rece 99.8 1.4E-22 5E-27 209.7 3.4 134 10-145 5-145 (146)
17 2z81_A CD282 antigen, TOLL-lik 99.8 9.2E-21 3.2E-25 248.7 20.4 126 1375-1501 26-157 (549)
18 2z63_A TOLL-like receptor 4, v 99.8 3.2E-20 1.1E-24 244.8 25.7 137 1658-1812 369-509 (570)
19 1o6v_A Internalin A; bacterial 99.8 6.8E-20 2.3E-24 234.5 27.3 344 1372-1807 43-386 (466)
20 3j0a_A TOLL-like receptor 5; m 99.8 5.5E-20 1.9E-24 252.6 27.5 137 1364-1502 15-158 (844)
21 4ecn_A Leucine-rich repeat pro 99.8 1.1E-20 3.8E-25 253.8 18.7 339 1410-1813 437-822 (876)
22 1ziw_A TOLL-like receptor 3; i 99.8 8.5E-20 2.9E-24 246.0 26.8 130 1371-1501 45-180 (680)
23 3vq2_A TLR4, TOLL-like recepto 99.8 3.7E-20 1.3E-24 246.0 21.3 405 1370-1808 51-557 (606)
24 3v47_A TOLL-like receptor 5B a 99.8 2.1E-19 7E-24 229.9 26.6 362 1375-1808 30-407 (455)
25 4fmz_A Internalin; leucine ric 99.8 2.1E-19 7.1E-24 220.8 24.5 178 1367-1572 36-213 (347)
26 2z81_A CD282 antigen, TOLL-lik 99.8 6.1E-20 2.1E-24 240.9 20.6 404 1369-1812 44-488 (549)
27 2z7x_B TOLL-like receptor 1, v 99.8 1.9E-19 6.4E-24 234.4 24.3 408 1375-1813 21-460 (520)
28 3bz5_A Internalin-J, INLJ; leu 99.8 3.1E-19 1.1E-23 226.2 25.3 304 1368-1784 35-349 (457)
29 3t6q_A CD180 antigen; protein- 99.8 2.3E-19 8E-24 238.3 24.2 409 1375-1807 33-511 (606)
30 1ziw_A TOLL-like receptor 3; i 99.8 5.5E-19 1.9E-23 238.1 26.3 127 1375-1502 25-155 (680)
31 3rgz_A Protein brassinosteroid 99.8 1.8E-19 6.2E-24 244.8 21.6 412 1372-1813 244-721 (768)
32 4eco_A Uncharacterized protein 99.8 2.8E-19 9.6E-24 237.1 21.2 371 1369-1810 200-633 (636)
33 4fmz_A Internalin; leucine ric 99.8 1.6E-18 5.3E-23 213.0 26.3 290 1364-1785 55-344 (347)
34 3o6n_A APL1; leucine-rich repe 99.8 6.1E-19 2.1E-23 220.3 21.8 127 1373-1501 43-174 (390)
35 3rgz_A Protein brassinosteroid 99.8 2.4E-19 8.3E-24 243.6 18.2 408 1369-1813 94-531 (768)
36 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-18 3.7E-23 227.2 22.7 395 1378-1813 3-437 (520)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-18 7.4E-23 226.3 24.9 404 1375-1813 52-489 (562)
38 2id5_A Lingo-1, leucine rich r 99.8 3E-18 1E-22 220.3 25.3 316 1378-1785 14-331 (477)
39 1o6v_A Internalin A; bacterial 99.8 6.2E-18 2.1E-22 216.3 27.2 330 1364-1785 57-386 (466)
40 2z63_A TOLL-like receptor 4, v 99.8 4.1E-18 1.4E-22 224.7 24.4 137 1364-1502 18-159 (570)
41 3oja_B Anopheles plasmodium-re 99.8 2.5E-18 8.7E-23 226.8 22.4 303 1373-1785 49-356 (597)
42 3oja_B Anopheles plasmodium-re 99.8 3.8E-18 1.3E-22 225.1 23.7 307 1394-1807 48-356 (597)
43 3j0a_A TOLL-like receptor 5; m 99.8 4.1E-18 1.4E-22 234.1 23.7 129 1370-1499 43-181 (844)
44 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-17 5E-22 222.6 25.7 126 1375-1501 52-182 (635)
45 3o6n_A APL1; leucine-rich repe 99.8 2.2E-17 7.6E-22 206.1 24.6 283 1371-1785 65-350 (390)
46 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-17 6.2E-22 209.9 23.6 291 1364-1753 53-349 (457)
47 2js7_A Myeloid differentiation 99.8 2.8E-19 9.7E-24 188.4 5.2 100 12-113 13-117 (160)
48 2id5_A Lingo-1, leucine rich r 99.7 6.7E-17 2.3E-21 207.7 26.4 295 1375-1754 32-331 (477)
49 1fyx_A TOLL-like receptor 2; b 99.7 1.4E-19 4.6E-24 189.1 0.7 100 12-113 2-107 (149)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.5E-17 8.4E-22 216.2 20.8 397 1376-1813 32-466 (562)
51 1t3g_A X-linked interleukin-1 99.7 1.2E-18 4.3E-23 183.3 6.1 100 14-113 1-114 (159)
52 2j67_A TOLL like receptor 10; 99.7 4.9E-19 1.7E-23 189.4 2.8 99 10-110 30-133 (178)
53 3v47_A TOLL-like receptor 5B a 99.7 4E-16 1.4E-20 199.3 24.9 344 1368-1785 47-406 (455)
54 1xku_A Decorin; proteoglycan, 99.7 1.1E-15 3.8E-20 185.9 26.3 121 1376-1501 32-154 (330)
55 4g8a_A TOLL-like receptor 4; l 99.7 9.4E-16 3.2E-20 205.1 27.1 148 1378-1538 34-184 (635)
56 2ft3_A Biglycan; proteoglycan, 99.7 7E-16 2.4E-20 187.8 21.2 89 1715-1807 239-331 (332)
57 4fcg_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 189.2 17.9 175 1374-1569 80-264 (328)
58 1jl5_A Outer protein YOPM; leu 99.7 3.2E-16 1.1E-20 198.3 17.7 166 1370-1572 29-209 (454)
59 4fcg_A Uncharacterized protein 99.7 4.9E-16 1.7E-20 188.2 18.0 135 1421-1569 80-217 (328)
60 1jl5_A Outer protein YOPM; leu 99.7 2.1E-15 7.3E-20 190.8 23.7 163 1375-1574 91-253 (454)
61 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-15 5.2E-20 184.8 21.1 122 1376-1502 34-157 (332)
62 2z80_A TOLL-like receptor 2, v 99.6 1.1E-15 3.8E-20 187.8 16.8 179 1376-1574 32-214 (353)
63 3g06_A SSPH2 (leucine-rich rep 99.6 4.8E-15 1.6E-19 193.0 23.6 155 1376-1572 41-195 (622)
64 1xku_A Decorin; proteoglycan, 99.6 1.8E-14 6.1E-19 175.3 25.1 174 1375-1572 52-230 (330)
65 1ogq_A PGIP-2, polygalacturona 99.6 4E-15 1.4E-19 179.1 15.9 103 1398-1501 51-158 (313)
66 3ogk_B Coronatine-insensitive 99.6 3.9E-16 1.3E-20 206.7 6.9 385 1373-1813 110-529 (592)
67 3zyj_A Leucine-rich repeat-con 99.6 2.2E-14 7.6E-19 181.8 22.4 174 1377-1571 45-220 (440)
68 3zyi_A Leucine-rich repeat-con 99.6 2.1E-14 7.2E-19 182.7 21.8 174 1377-1571 56-231 (452)
69 1ogq_A PGIP-2, polygalacturona 99.6 7.8E-15 2.7E-19 176.6 15.7 177 1375-1571 50-234 (313)
70 2z80_A TOLL-like receptor 2, v 99.6 1.6E-14 5.4E-19 177.5 17.9 159 1394-1572 28-188 (353)
71 3g06_A SSPH2 (leucine-rich rep 99.5 1.3E-13 4.5E-18 179.4 23.7 154 1375-1571 61-214 (622)
72 2z66_A Variable lymphocyte rec 99.5 7.2E-14 2.5E-18 167.9 18.8 174 1378-1571 10-188 (306)
73 3zyj_A Leucine-rich repeat-con 99.5 2.6E-13 8.9E-18 172.0 21.6 177 1375-1572 64-245 (440)
74 2p1m_B Transport inhibitor res 99.5 1E-14 3.5E-19 193.1 8.6 382 1374-1808 104-518 (594)
75 3zyi_A Leucine-rich repeat-con 99.5 2.9E-13 9.9E-18 172.2 21.0 177 1375-1572 75-256 (452)
76 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-13 6E-18 162.6 17.6 172 1378-1570 14-189 (285)
77 1z7x_W Ribonuclease inhibitor; 99.5 1.1E-15 3.8E-20 195.6 -2.6 64 1419-1482 53-126 (461)
78 3ogk_B Coronatine-insensitive 99.5 2E-14 6.8E-19 190.3 9.0 137 1661-1806 402-548 (592)
79 2o6q_A Variable lymphocyte rec 99.5 6.3E-13 2.2E-17 156.3 20.2 179 1375-1572 37-219 (270)
80 2z66_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 160.8 17.7 178 1375-1571 28-212 (306)
81 1h6u_A Internalin H; cell adhe 99.5 1E-12 3.5E-17 157.6 19.7 191 1369-1593 35-225 (308)
82 1ozn_A Reticulon 4 receptor; N 99.5 8.8E-13 3E-17 156.6 18.7 198 1374-1593 31-233 (285)
83 3o53_A Protein LRIM1, AGAP0063 99.4 3.4E-14 1.2E-18 171.4 5.8 84 1411-1500 23-107 (317)
84 2p1m_B Transport inhibitor res 99.4 2.1E-14 7.1E-19 190.2 4.0 376 1372-1808 63-493 (594)
85 3rfs_A Internalin B, repeat mo 99.4 1.5E-12 5.1E-17 153.2 18.8 188 1364-1572 30-219 (272)
86 3o53_A Protein LRIM1, AGAP0063 99.4 1.9E-13 6.4E-18 165.0 11.2 97 1396-1501 33-129 (317)
87 1p9a_G Platelet glycoprotein I 99.4 1.9E-12 6.5E-17 153.6 18.1 195 1371-1592 6-202 (290)
88 1wwl_A Monocyte differentiatio 99.4 1.3E-13 4.3E-18 166.1 7.3 155 1396-1571 42-214 (312)
89 1h6u_A Internalin H; cell adhe 99.4 1.3E-12 4.3E-17 156.7 15.5 181 1364-1573 52-232 (308)
90 3rfs_A Internalin B, repeat mo 99.4 7.8E-13 2.7E-17 155.7 13.4 181 1363-1569 51-233 (272)
91 2xwt_C Thyrotropin receptor; s 99.4 9.6E-13 3.3E-17 151.7 13.6 110 1387-1500 23-138 (239)
92 2o6q_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 149.2 18.9 179 1376-1574 17-197 (270)
93 3m19_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 147.7 18.2 177 1376-1572 15-193 (251)
94 1h6t_A Internalin B; cell adhe 99.4 1.9E-12 6.4E-17 153.8 15.4 178 1366-1572 37-214 (291)
95 1z7x_W Ribonuclease inhibitor; 99.4 4.8E-14 1.6E-18 180.4 1.6 371 1397-1807 3-409 (461)
96 2z62_A TOLL-like receptor 4, v 99.4 3.2E-12 1.1E-16 150.9 17.0 180 1375-1574 28-216 (276)
97 2ast_B S-phase kinase-associat 99.4 4.9E-13 1.7E-17 163.1 7.9 133 1422-1568 70-205 (336)
98 3oja_A Leucine-rich immune mol 99.4 1E-12 3.5E-17 167.9 11.0 114 1376-1499 35-151 (487)
99 1m9s_A Internalin B; cell inva 99.3 4E-12 1.4E-16 165.4 15.2 179 1365-1572 33-211 (605)
100 2z62_A TOLL-like receptor 4, v 99.3 3.8E-12 1.3E-16 150.3 13.2 182 1370-1572 47-238 (276)
101 2xwt_C Thyrotropin receptor; s 99.3 2.5E-12 8.4E-17 148.3 9.6 191 1375-1592 31-233 (239)
102 4ezg_A Putative uncharacterize 99.3 7.3E-12 2.5E-16 139.5 13.1 129 1370-1502 39-169 (197)
103 4ay9_X Follicle-stimulating ho 99.3 1.7E-11 5.8E-16 150.0 16.7 120 1378-1499 12-135 (350)
104 3m19_A Variable lymphocyte rec 99.3 3E-11 1E-15 140.3 17.6 152 1375-1538 35-190 (251)
105 3e6j_A Variable lymphocyte rec 99.2 5.8E-11 2E-15 135.5 15.9 123 1377-1501 21-144 (229)
106 3oja_A Leucine-rich immune mol 99.2 1.4E-11 4.9E-16 157.3 12.1 191 1370-1593 53-245 (487)
107 4ay9_X Follicle-stimulating ho 99.2 8.8E-11 3E-15 143.6 18.3 97 1400-1500 12-112 (350)
108 1wwl_A Monocyte differentiatio 99.2 1.7E-11 5.9E-16 147.3 11.7 180 1373-1574 93-290 (312)
109 2o6s_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 134.9 13.3 126 1375-1501 28-157 (208)
110 2qen_A Walker-type ATPase; unk 99.2 1.6E-10 5.5E-15 141.6 19.6 283 979-1299 13-347 (350)
111 1xeu_A Internalin C; cellular 99.2 8.5E-12 2.9E-16 145.6 7.5 161 1382-1572 26-186 (263)
112 1p9a_G Platelet glycoprotein I 99.2 5.7E-11 1.9E-15 140.8 14.7 176 1375-1572 31-209 (290)
113 2v9t_B SLIT homolog 2 protein 99.2 5.9E-11 2E-15 134.4 14.2 120 1379-1500 15-136 (220)
114 1w5s_A Origin recognition comp 99.2 5.9E-11 2E-15 149.1 15.4 244 185-441 21-320 (412)
115 2fna_A Conserved hypothetical 99.2 2.4E-10 8.2E-15 140.4 20.6 282 979-1299 14-355 (357)
116 1w5s_A Origin recognition comp 99.2 2.4E-11 8.2E-16 152.7 11.7 299 979-1296 23-387 (412)
117 2v70_A SLIT-2, SLIT homolog 2 99.2 8.2E-11 2.8E-15 133.3 14.7 122 1378-1501 14-138 (220)
118 1h6t_A Internalin B; cell adhe 99.2 9E-11 3.1E-15 139.3 15.1 155 1364-1538 57-211 (291)
119 2v9t_B SLIT homolog 2 protein 99.2 1E-10 3.5E-15 132.5 14.9 124 1375-1499 32-159 (220)
120 4ezg_A Putative uncharacterize 99.2 5.6E-11 1.9E-15 132.2 12.3 136 1363-1501 54-190 (197)
121 1xeu_A Internalin C; cellular 99.2 9.2E-11 3.2E-15 136.8 14.5 157 1361-1538 27-183 (263)
122 2v70_A SLIT-2, SLIT homolog 2 99.2 9E-11 3.1E-15 132.9 13.9 126 1375-1501 32-162 (220)
123 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4.1E-15 132.9 14.9 125 1375-1501 40-168 (229)
124 2o6s_A Variable lymphocyte rec 99.2 8E-11 2.7E-15 132.3 12.8 165 1378-1569 10-176 (208)
125 2ca6_A RAN GTPase-activating p 99.2 7.8E-12 2.7E-16 155.5 3.7 83 1419-1501 29-131 (386)
126 2qen_A Walker-type ATPase; unk 99.1 8.8E-11 3E-15 143.9 11.6 203 179-393 5-249 (350)
127 1m9s_A Internalin B; cell inva 99.1 1.3E-10 4.6E-15 151.1 13.7 155 1364-1538 54-208 (605)
128 3cvr_A Invasion plasmid antige 99.1 3.5E-10 1.2E-14 145.3 17.1 166 1375-1573 80-245 (571)
129 1a9n_A U2A', U2A'; complex (nu 99.1 6.4E-11 2.2E-15 129.1 8.7 129 1370-1502 14-150 (176)
130 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.5E-15 142.6 12.2 178 1378-1572 21-203 (361)
131 2ell_A Acidic leucine-rich nuc 99.1 1.3E-10 4.4E-15 125.7 10.6 125 1375-1503 24-158 (168)
132 2je0_A Acidic leucine-rich nuc 99.1 1.1E-10 3.7E-15 123.5 9.1 124 1374-1500 16-148 (149)
133 2ast_B S-phase kinase-associat 99.1 5.7E-11 2E-15 144.7 7.9 180 1375-1569 70-258 (336)
134 2xot_A Amphoterin-induced prot 99.1 3.3E-10 1.1E-14 139.0 14.6 152 1375-1538 39-200 (361)
135 2fna_A Conserved hypothetical 99.1 1.2E-10 3.9E-15 143.3 10.1 200 180-394 7-254 (357)
136 4glp_A Monocyte differentiatio 99.1 2.8E-10 9.6E-15 136.6 12.4 195 1374-1592 90-301 (310)
137 2ca6_A RAN GTPase-activating p 99.1 1.2E-10 4E-15 144.8 9.2 194 1371-1573 28-259 (386)
138 2qby_B CDC6 homolog 3, cell di 99.1 2.4E-09 8.1E-14 133.0 20.8 236 186-439 20-294 (384)
139 3qfl_A MLA10; coiled-coil, (CC 99.1 2.6E-10 8.8E-15 112.5 9.3 64 566-629 19-83 (115)
140 2wfh_A SLIT homolog 2 protein 99.0 1E-09 3.5E-14 121.2 13.9 121 1378-1501 13-135 (193)
141 1w8a_A SLIT protein; signaling 99.0 6.5E-10 2.2E-14 122.9 12.2 122 1378-1501 11-135 (192)
142 3cvr_A Invasion plasmid antige 99.0 1.6E-09 5.5E-14 139.2 17.5 171 1376-1592 60-237 (571)
143 1dce_A Protein (RAB geranylger 99.0 4.6E-10 1.6E-14 145.2 12.1 120 1376-1498 442-566 (567)
144 4glp_A Monocyte differentiatio 99.0 3.9E-10 1.3E-14 135.4 9.7 176 1372-1572 114-308 (310)
145 2qby_A CDC6 homolog 1, cell di 99.0 1.1E-09 3.7E-14 136.2 13.2 241 185-439 19-296 (386)
146 2ell_A Acidic leucine-rich nuc 99.0 6.9E-10 2.3E-14 119.9 9.8 117 1370-1487 44-165 (168)
147 2o6r_A Variable lymphocyte rec 99.0 2E-09 6.9E-14 117.3 13.6 123 1377-1501 9-133 (177)
148 1njg_A DNA polymerase III subu 99.0 1.2E-09 4.1E-14 126.2 11.7 196 184-391 21-229 (250)
149 2je0_A Acidic leucine-rich nuc 99.0 8.2E-10 2.8E-14 116.6 8.6 131 1395-1535 15-148 (149)
150 2v1u_A Cell division control p 99.0 2.7E-09 9.1E-14 132.7 14.6 240 185-438 18-299 (387)
151 3goz_A Leucine-rich repeat-con 98.9 5.9E-10 2E-14 137.0 6.8 186 1376-1572 23-239 (362)
152 4b8c_D Glucose-repressible alc 98.9 1E-09 3.4E-14 146.8 9.3 105 1394-1501 221-325 (727)
153 2chg_A Replication factor C sm 98.9 7.3E-09 2.5E-13 117.6 14.2 184 183-387 14-201 (226)
154 1a9n_A U2A', U2A'; complex (nu 98.9 1.4E-09 4.8E-14 118.4 7.4 119 1364-1484 30-155 (176)
155 2r9u_A Variable lymphocyte rec 98.9 3.6E-09 1.2E-13 114.7 10.6 112 1378-1491 15-127 (174)
156 1w8a_A SLIT protein; signaling 98.9 5.3E-09 1.8E-13 115.6 11.7 106 1376-1482 30-139 (192)
157 2wfh_A SLIT homolog 2 protein 98.9 7.2E-09 2.5E-13 114.4 12.8 99 1399-1501 12-111 (193)
158 4b8c_D Glucose-repressible alc 98.9 2.4E-09 8.3E-14 143.1 10.2 148 1376-1538 174-327 (727)
159 2qby_B CDC6 homolog 3, cell di 98.9 8.5E-08 2.9E-12 118.9 23.2 280 979-1284 21-339 (384)
160 1dce_A Protein (RAB geranylger 98.9 7.3E-09 2.5E-13 134.0 13.6 100 1398-1502 442-543 (567)
161 2o6r_A Variable lymphocyte rec 98.8 1.2E-08 4.3E-13 111.0 12.5 112 1374-1486 27-141 (177)
162 3g39_A Variable lymphocyte rec 98.8 1E-08 3.4E-13 110.8 11.3 108 1377-1486 11-119 (170)
163 2v1u_A Cell division control p 98.8 2.9E-08 1E-12 123.2 17.3 283 979-1283 20-350 (387)
164 3goz_A Leucine-rich repeat-con 98.8 4E-09 1.4E-13 129.5 9.2 190 1372-1572 47-267 (362)
165 1fnn_A CDC6P, cell division co 98.8 4.2E-08 1.4E-12 121.9 16.1 247 185-442 16-301 (389)
166 3g39_A Variable lymphocyte rec 98.7 3.2E-08 1.1E-12 106.8 10.2 100 1398-1501 10-111 (170)
167 2qby_A CDC6 homolog 1, cell di 98.7 6.5E-08 2.2E-12 120.0 14.5 195 979-1175 21-243 (386)
168 1sxj_B Activator 1 37 kDa subu 98.7 2.6E-08 8.8E-13 120.3 10.1 185 184-389 19-209 (323)
169 2r9u_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 107.0 9.9 99 1399-1501 14-114 (174)
170 1ds9_A Outer arm dynein; leuci 98.7 5.2E-10 1.8E-14 124.5 -5.1 110 1387-1501 37-149 (198)
171 1fnn_A CDC6P, cell division co 98.6 8E-07 2.7E-11 110.3 20.5 287 979-1284 18-351 (389)
172 1njg_A DNA polymerase III subu 98.6 3E-07 1E-11 105.8 14.2 195 977-1180 22-231 (250)
173 1iqp_A RFCS; clamp loader, ext 98.5 2.6E-07 8.7E-12 111.7 12.7 185 182-387 21-209 (327)
174 2chg_A Replication factor C sm 98.5 4.9E-07 1.7E-11 102.4 14.3 188 977-1180 16-207 (226)
175 1ds9_A Outer arm dynein; leuci 98.5 1.6E-08 5.4E-13 112.4 1.5 101 1398-1502 24-125 (198)
176 2ifg_A High affinity nerve gro 98.4 5.1E-07 1.7E-11 110.1 11.0 102 1380-1483 13-117 (347)
177 3sb4_A Hypothetical leucine ri 98.4 3E-07 1E-11 111.1 7.8 179 1374-1574 48-313 (329)
178 2ifg_A High affinity nerve gro 98.4 7.4E-07 2.5E-11 108.6 10.8 100 1400-1501 11-112 (347)
179 1jr3_A DNA polymerase III subu 98.3 2.2E-06 7.4E-11 105.6 13.2 193 184-388 14-219 (373)
180 2chq_A Replication factor C sm 98.3 2.2E-06 7.5E-11 103.0 12.8 180 183-385 14-199 (319)
181 1sxj_B Activator 1 37 kDa subu 98.3 2.3E-06 7.7E-11 103.1 11.5 184 977-1176 20-209 (323)
182 3sb4_A Hypothetical leucine ri 98.2 2.4E-06 8.2E-11 103.1 10.8 37 1525-1568 224-260 (329)
183 1hqc_A RUVB; extended AAA-ATPa 98.2 7E-06 2.4E-10 98.8 12.7 174 979-1180 13-214 (324)
184 1hqc_A RUVB; extended AAA-ATPa 98.1 6.2E-06 2.1E-10 99.3 11.6 173 183-389 9-210 (324)
185 4fdw_A Leucine rich hypothetic 98.1 6.9E-05 2.4E-09 92.3 21.1 98 1396-1499 112-210 (401)
186 3un9_A NLR family member X1; l 98.1 2.5E-07 8.7E-12 113.0 -0.9 128 1374-1501 71-220 (372)
187 1jbk_A CLPB protein; beta barr 98.1 2.3E-06 7.8E-11 94.2 6.7 50 184-235 20-69 (195)
188 3h4m_A Proteasome-activating n 98.1 1E-05 3.5E-10 95.3 11.8 175 183-382 14-222 (285)
189 3bos_A Putative DNA replicatio 98.0 4.3E-06 1.5E-10 95.9 6.9 170 184-386 26-213 (242)
190 2z4s_A Chromosomal replication 98.0 9.6E-06 3.3E-10 101.2 10.5 178 185-383 104-299 (440)
191 1sxj_D Activator 1 41 kDa subu 98.0 1.5E-05 5.3E-10 97.1 12.1 191 183-385 34-230 (353)
192 1sxj_E Activator 1 40 kDa subu 98.0 2.1E-05 7.1E-10 96.0 12.6 193 182-384 10-231 (354)
193 3d8b_A Fidgetin-like protein 1 98.0 3.6E-05 1.2E-09 93.4 14.3 194 162-382 63-286 (357)
194 3un9_A NLR family member X1; l 98.0 5.6E-07 1.9E-11 110.0 -2.2 167 1396-1573 71-254 (372)
195 3eie_A Vacuolar protein sortin 97.9 4.2E-05 1.4E-09 91.6 13.7 176 183-382 15-219 (322)
196 1iqp_A RFCS; clamp loader, ext 97.9 1.5E-05 5.2E-10 95.9 9.6 185 979-1181 26-216 (327)
197 3te6_A Regulatory protein SIR3 97.9 4.9E-05 1.7E-09 89.1 13.5 164 187-358 21-211 (318)
198 2qz4_A Paraplegin; AAA+, SPG7, 97.9 6.5E-05 2.2E-09 87.1 14.6 176 185-383 5-214 (262)
199 3te6_A Regulatory protein SIR3 97.9 6.8E-05 2.3E-09 87.9 14.3 165 980-1146 22-211 (318)
200 3pfi_A Holliday junction ATP-d 97.9 3E-05 1E-09 93.8 11.5 168 184-385 27-222 (338)
201 1sxj_A Activator 1 95 kDa subu 97.9 2.8E-05 9.5E-10 99.4 11.0 185 183-383 36-245 (516)
202 3u61_B DNA polymerase accessor 97.9 5.9E-05 2E-09 90.6 12.9 175 183-384 23-210 (324)
203 3b9p_A CG5977-PA, isoform A; A 97.8 0.00011 3.8E-09 87.0 14.8 179 182-384 17-226 (297)
204 3pvs_A Replication-associated 97.8 7.9E-05 2.7E-09 92.6 13.2 173 182-383 22-208 (447)
205 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00027 9.3E-09 84.2 17.4 175 185-382 11-214 (322)
206 3uk6_A RUVB-like 2; hexameric 97.8 0.00017 5.9E-09 88.3 16.1 192 185-385 43-298 (368)
207 4fdw_A Leucine rich hypothetic 97.8 0.00012 4.1E-09 90.2 14.4 123 1372-1499 177-307 (401)
208 1d2n_A N-ethylmaleimide-sensit 97.8 6.9E-05 2.4E-09 87.4 11.4 169 187-383 34-230 (272)
209 4fs7_A Uncharacterized protein 97.8 0.00097 3.3E-08 82.3 22.4 58 1393-1453 67-125 (394)
210 1l8q_A Chromosomal replication 97.8 6E-05 2E-09 90.5 11.0 174 185-382 10-200 (324)
211 2zan_A Vacuolar protein sortin 97.8 0.00027 9.2E-09 88.3 17.3 177 183-382 131-336 (444)
212 2qp9_X Vacuolar protein sortin 97.8 0.00021 7.1E-09 86.6 15.6 175 184-382 49-252 (355)
213 1a5t_A Delta prime, HOLB; zinc 97.7 0.00028 9.7E-09 84.7 16.2 177 193-386 9-201 (334)
214 2chq_A Replication factor C sm 97.7 0.00015 5.1E-09 86.8 13.8 181 978-1178 17-205 (319)
215 3vfd_A Spastin; ATPase, microt 97.7 0.00024 8.2E-09 87.5 15.7 177 183-383 112-318 (389)
216 2p65_A Hypothetical protein PF 97.7 6.8E-05 2.3E-09 81.7 9.0 50 184-235 20-69 (187)
217 1sxj_C Activator 1 40 kDa subu 97.7 0.00024 8.1E-09 85.9 14.2 179 184-384 23-206 (340)
218 3cf0_A Transitional endoplasmi 97.7 0.0005 1.7E-08 81.3 16.7 152 185-358 14-199 (301)
219 3syl_A Protein CBBX; photosynt 97.7 9.5E-05 3.3E-09 88.1 10.4 149 187-358 32-217 (309)
220 3e4g_A ATP synthase subunit S, 97.6 1.8E-05 6.2E-10 83.8 2.7 68 1715-1789 83-154 (176)
221 3e4g_A ATP synthase subunit S, 97.6 2.9E-05 1E-09 82.2 4.2 90 1663-1757 62-153 (176)
222 4fs7_A Uncharacterized protein 97.6 0.002 7E-08 79.4 21.6 122 1371-1499 67-192 (394)
223 3n70_A Transport activator; si 97.6 8.7E-05 3E-09 77.2 6.9 47 187-233 2-48 (145)
224 1jbk_A CLPB protein; beta barr 97.5 8.2E-05 2.8E-09 81.5 6.4 44 978-1021 22-65 (195)
225 2z4s_A Chromosomal replication 97.5 0.00035 1.2E-08 87.0 12.8 178 999-1196 130-332 (440)
226 1jr3_A DNA polymerase III subu 97.5 0.00033 1.1E-08 85.9 11.9 192 979-1178 17-222 (373)
227 4b4t_J 26S protease regulatory 97.5 0.00054 1.9E-08 82.2 12.9 171 184-382 146-353 (405)
228 4b4t_L 26S protease subunit RP 97.4 0.0012 3.9E-08 80.8 15.5 151 184-358 179-365 (437)
229 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0019 6.3E-08 74.7 16.5 153 999-1171 39-215 (262)
230 3bos_A Putative DNA replicatio 97.4 5.4E-05 1.8E-09 86.5 3.0 166 985-1178 38-218 (242)
231 4b4t_M 26S protease regulatory 97.4 0.00042 1.4E-08 84.6 10.5 152 183-358 178-365 (434)
232 3h4m_A Proteasome-activating n 97.3 0.00087 3E-08 78.6 12.8 166 980-1169 19-222 (285)
233 3hu3_A Transitional endoplasmi 97.3 0.00052 1.8E-08 86.2 11.2 152 186-359 204-386 (489)
234 2ra8_A Uncharacterized protein 97.3 8E-05 2.7E-09 90.0 3.7 57 1419-1477 169-227 (362)
235 3pvs_A Replication-associated 97.3 0.0013 4.3E-08 81.8 14.0 175 977-1177 25-215 (447)
236 2ra8_A Uncharacterized protein 97.3 0.00013 4.5E-09 88.1 4.8 102 1395-1500 170-287 (362)
237 4b4t_H 26S protease regulatory 97.3 0.0014 4.7E-08 79.7 13.2 169 186-382 209-414 (467)
238 4b4t_I 26S protease regulatory 97.2 0.0015 5.2E-08 78.5 13.2 151 184-358 180-366 (437)
239 1qvr_A CLPB protein; coiled co 97.2 0.0007 2.4E-08 92.1 11.8 51 183-235 167-217 (854)
240 3pxg_A Negative regulator of g 97.2 0.0011 3.6E-08 83.5 12.1 149 183-358 177-338 (468)
241 1sxj_D Activator 1 41 kDa subu 97.2 0.00079 2.7E-08 81.8 10.6 193 978-1177 37-235 (353)
242 2w58_A DNAI, primosome compone 97.2 0.0017 5.8E-08 71.7 12.4 59 185-243 24-88 (202)
243 3rw6_A Nuclear RNA export fact 97.2 0.00035 1.2E-08 79.9 6.4 79 1419-1499 167-258 (267)
244 3ec2_A DNA replication protein 97.2 0.00074 2.5E-08 73.1 8.8 49 186-234 10-63 (180)
245 2gno_A DNA polymerase III, gam 97.1 0.0014 4.8E-08 77.0 11.5 146 190-358 1-152 (305)
246 4b4t_K 26S protease regulatory 97.1 0.00087 3E-08 81.7 9.9 52 185-236 171-233 (428)
247 4fcw_A Chaperone protein CLPB; 97.1 0.0013 4.3E-08 78.4 11.2 50 186-235 17-73 (311)
248 4gt6_A Cell surface protein; l 97.1 0.03 1E-06 68.8 24.1 103 1393-1499 59-167 (394)
249 1io0_A Tropomodulin; LRR prote 97.1 0.00023 7.7E-09 77.5 4.1 82 1419-1500 62-159 (185)
250 3rw6_A Nuclear RNA export fact 97.1 0.00046 1.6E-08 78.9 6.6 79 1396-1476 169-258 (267)
251 1sxj_E Activator 1 40 kDa subu 97.1 0.0013 4.4E-08 80.0 10.9 193 979-1177 15-237 (354)
252 1lv7_A FTSH; alpha/beta domain 97.1 0.0019 6.5E-08 74.4 11.8 51 184-234 10-70 (257)
253 1ofh_A ATP-dependent HSL prote 97.0 0.0013 4.4E-08 78.2 9.8 49 186-234 15-75 (310)
254 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.019 6.6E-07 68.1 19.7 157 999-1177 45-223 (322)
255 3co5_A Putative two-component 97.0 0.00029 9.9E-09 73.0 3.3 49 186-234 4-52 (143)
256 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0026 8.9E-08 85.6 13.5 156 184-358 184-362 (758)
257 2bjv_A PSP operon transcriptio 97.0 0.0009 3.1E-08 77.6 7.8 49 186-234 6-54 (265)
258 3pfi_A Holliday junction ATP-d 97.0 0.0038 1.3E-07 75.2 13.6 172 977-1177 28-227 (338)
259 1d2n_A N-ethylmaleimide-sensit 97.0 0.0069 2.3E-07 70.3 15.3 149 996-1169 61-229 (272)
260 2ce7_A Cell division protein F 97.0 0.0041 1.4E-07 77.2 13.9 152 185-358 15-199 (476)
261 1sxj_A Activator 1 95 kDa subu 97.0 0.0018 6.3E-08 82.5 10.9 185 977-1176 38-252 (516)
262 3ec2_A DNA replication protein 97.0 0.0007 2.4E-08 73.3 6.0 103 709-818 38-142 (180)
263 3pxi_A Negative regulator of g 96.9 0.0055 1.9E-07 82.3 15.7 148 184-358 178-338 (758)
264 2r62_A Cell division protease 96.9 0.00066 2.3E-08 78.9 5.5 153 184-358 9-196 (268)
265 1ojl_A Transcriptional regulat 96.8 0.002 6.8E-08 76.0 8.9 48 186-233 2-49 (304)
266 3d8b_A Fidgetin-like protein 1 96.8 0.015 5.2E-07 70.2 17.0 158 998-1177 116-295 (357)
267 3syl_A Protein CBBX; photosynt 96.8 0.0039 1.3E-07 74.0 11.5 132 998-1147 66-218 (309)
268 3u61_B DNA polymerase accessor 96.7 0.0066 2.2E-07 72.6 12.8 171 977-1174 25-213 (324)
269 1sxj_C Activator 1 40 kDa subu 96.7 0.0065 2.2E-07 73.1 12.4 179 977-1172 24-207 (340)
270 1a5t_A Delta prime, HOLB; zinc 96.7 0.0063 2.1E-07 72.9 12.2 166 984-1175 8-203 (334)
271 1io0_A Tropomodulin; LRR prote 96.7 0.00057 2E-08 74.3 2.7 83 1417-1499 31-128 (185)
272 3cf2_A TER ATPase, transitiona 96.7 0.0047 1.6E-07 81.1 11.7 151 186-358 204-385 (806)
273 1in4_A RUVB, holliday junction 96.7 0.0066 2.2E-07 72.7 12.2 170 184-385 23-218 (334)
274 2kjq_A DNAA-related protein; s 96.7 0.004 1.4E-07 64.7 8.9 27 209-235 36-62 (149)
275 2c9o_A RUVB-like 1; hexameric 96.7 0.0081 2.8E-07 75.3 13.3 50 185-234 36-88 (456)
276 3eie_A Vacuolar protein sortin 96.7 0.015 5.1E-07 69.2 15.1 155 1000-1176 52-227 (322)
277 3uk6_A RUVB-like 2; hexameric 96.7 0.0084 2.9E-07 73.1 13.2 49 1126-1175 252-301 (368)
278 1l8q_A Chromosomal replication 96.6 0.0064 2.2E-07 72.6 11.4 152 999-1171 37-202 (324)
279 2zan_A Vacuolar protein sortin 96.5 0.029 9.9E-07 69.8 17.0 152 999-1170 167-337 (444)
280 2qp9_X Vacuolar protein sortin 96.5 0.029 9.8E-07 67.7 16.4 147 1000-1169 85-252 (355)
281 3pxi_A Negative regulator of g 96.5 0.0056 1.9E-07 82.2 11.0 147 186-358 491-675 (758)
282 2p65_A Hypothetical protein PF 96.5 0.0024 8.2E-08 69.2 6.1 44 978-1021 22-65 (187)
283 3vfd_A Spastin; ATPase, microt 96.5 0.048 1.7E-06 66.7 18.2 177 979-1176 116-325 (389)
284 4gt6_A Cell surface protein; l 96.4 0.047 1.6E-06 67.1 18.1 83 1393-1477 83-168 (394)
285 3b9p_A CG5977-PA, isoform A; A 96.4 0.052 1.8E-06 63.7 17.7 174 979-1176 22-232 (297)
286 3t15_A Ribulose bisphosphate c 96.4 0.0046 1.6E-07 72.5 8.1 28 208-235 35-62 (293)
287 2dhr_A FTSH; AAA+ protein, hex 96.3 0.027 9.4E-07 70.3 14.9 149 184-358 29-214 (499)
288 1ixz_A ATP-dependent metallopr 96.3 0.013 4.6E-07 67.0 11.3 51 184-234 14-74 (254)
289 3cf0_A Transitional endoplasmi 96.3 0.035 1.2E-06 65.3 15.0 150 998-1171 48-222 (301)
290 2gno_A DNA polymerase III, gam 96.1 0.0079 2.7E-07 70.6 8.0 143 986-1146 5-152 (305)
291 1eiw_A Hypothetical protein MT 96.1 0.0082 2.8E-07 57.8 6.4 63 14-95 3-65 (111)
292 2x8a_A Nuclear valosin-contain 96.1 0.023 7.8E-07 65.7 11.6 124 212-358 47-191 (274)
293 2w58_A DNAI, primosome compone 96.1 0.0038 1.3E-07 68.8 4.7 101 710-818 55-158 (202)
294 2r44_A Uncharacterized protein 96.1 0.012 4.1E-07 70.5 9.5 48 185-236 26-73 (331)
295 1ypw_A Transitional endoplasmi 96.0 0.021 7.2E-07 76.5 12.4 53 184-236 202-265 (806)
296 4b4t_J 26S protease regulatory 96.0 0.085 2.9E-06 63.3 16.0 148 999-1170 182-354 (405)
297 1iy2_A ATP-dependent metallopr 96.0 0.026 8.8E-07 65.6 11.5 52 183-234 37-98 (278)
298 2ce7_A Cell division protein F 95.7 0.03 1E-06 69.5 10.9 172 977-1170 18-221 (476)
299 1um8_A ATP-dependent CLP prote 95.7 0.028 9.7E-07 68.5 10.6 25 210-234 73-97 (376)
300 3n70_A Transport activator; si 95.6 0.0037 1.3E-07 64.7 2.0 40 982-1022 5-47 (145)
301 3pxg_A Negative regulator of g 95.5 0.02 6.9E-07 71.8 8.8 147 979-1147 181-339 (468)
302 4b4t_L 26S protease subunit RP 95.5 0.067 2.3E-06 65.3 12.9 148 999-1170 215-387 (437)
303 3m6a_A ATP-dependent protease 95.5 0.099 3.4E-06 66.7 15.2 51 187-237 82-136 (543)
304 1qvr_A CLPB protein; coiled co 95.5 0.023 7.7E-07 77.2 9.5 43 979-1021 171-213 (854)
305 4b4t_H 26S protease regulatory 95.4 0.15 5E-06 62.1 15.3 149 998-1170 242-415 (467)
306 4b4t_M 26S protease regulatory 95.3 0.092 3.1E-06 64.0 13.0 147 999-1170 215-387 (434)
307 3co5_A Putative two-component 95.2 0.041 1.4E-06 56.6 8.4 110 683-817 5-114 (143)
308 1lv7_A FTSH; alpha/beta domain 95.1 0.13 4.6E-06 58.7 13.4 150 1000-1171 46-219 (257)
309 4b4t_I 26S protease regulatory 95.1 0.18 6.1E-06 60.7 14.5 147 999-1170 216-388 (437)
310 4b4t_K 26S protease regulatory 95.1 0.23 7.9E-06 60.5 15.8 148 999-1170 206-379 (428)
311 3hu3_A Transitional endoplasmi 95.0 0.15 5.1E-06 63.8 14.1 148 998-1169 237-406 (489)
312 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.011 3.9E-07 68.3 3.1 68 1000-1089 124-193 (331)
313 1r6b_X CLPA protein; AAA+, N-t 94.8 0.11 3.6E-06 69.9 13.1 152 979-1146 187-362 (758)
314 1in4_A RUVB, holliday junction 94.8 0.29 9.9E-06 58.3 15.5 50 1126-1176 173-222 (334)
315 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.032 1.1E-06 64.5 6.2 34 209-245 123-156 (331)
316 2kjq_A DNAA-related protein; s 94.6 0.017 5.7E-07 60.0 3.5 87 709-817 36-123 (149)
317 2b8t_A Thymidine kinase; deoxy 94.6 0.017 5.9E-07 63.9 3.8 109 209-329 12-127 (223)
318 2r62_A Cell division protease 94.5 0.014 4.7E-07 67.6 2.9 21 1001-1021 46-66 (268)
319 2qgz_A Helicase loader, putati 94.5 0.07 2.4E-06 62.7 9.0 50 194-243 136-187 (308)
320 2cvh_A DNA repair and recombin 94.5 0.12 4E-06 57.5 10.4 85 999-1089 20-116 (220)
321 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.064 2.2E-06 60.3 7.8 35 209-243 23-57 (235)
322 4fcw_A Chaperone protein CLPB; 94.3 0.035 1.2E-06 65.7 5.7 22 1000-1021 48-69 (311)
323 2cvh_A DNA repair and recombin 94.3 0.047 1.6E-06 60.7 6.4 45 197-244 8-52 (220)
324 3cf2_A TER ATPase, transitiona 94.2 0.57 1.9E-05 61.6 17.2 172 975-1170 204-407 (806)
325 1g5t_A COB(I)alamin adenosyltr 93.9 0.09 3.1E-06 56.3 7.2 115 210-328 29-163 (196)
326 1sky_E F1-ATPase, F1-ATP synth 93.7 0.081 2.8E-06 64.6 7.2 31 211-241 153-183 (473)
327 1ixz_A ATP-dependent metallopr 93.6 0.25 8.7E-06 56.2 11.1 146 1002-1170 52-221 (254)
328 1ye8_A Protein THEP1, hypothet 93.6 0.47 1.6E-05 50.6 12.3 24 211-234 2-25 (178)
329 2orw_A Thymidine kinase; TMTK, 93.5 0.022 7.4E-07 61.5 1.6 25 210-234 4-28 (184)
330 2dhr_A FTSH; AAA+ protein, hex 93.2 0.32 1.1E-05 60.7 11.7 169 976-1170 32-236 (499)
331 1vma_A Cell division protein F 93.2 0.41 1.4E-05 55.8 11.9 50 194-244 83-138 (306)
332 3jvv_A Twitching mobility prot 93.1 0.14 4.8E-06 61.1 8.1 110 210-331 124-234 (356)
333 2eyu_A Twitching motility prot 92.9 0.17 5.8E-06 57.8 8.1 111 209-330 25-135 (261)
334 3ice_A Transcription terminati 92.9 0.046 1.6E-06 64.4 3.3 29 209-237 174-202 (422)
335 3e70_C DPA, signal recognition 92.9 0.71 2.4E-05 54.4 13.5 36 208-244 128-163 (328)
336 3hr8_A Protein RECA; alpha and 92.9 0.24 8.2E-06 58.9 9.5 52 193-244 44-96 (356)
337 1iy2_A ATP-dependent metallopr 92.8 0.39 1.3E-05 55.5 11.2 147 1002-1170 76-245 (278)
338 1qhx_A CPT, protein (chloramph 92.6 0.052 1.8E-06 58.1 3.1 25 210-234 4-28 (178)
339 1ojl_A Transcriptional regulat 92.5 0.07 2.4E-06 62.7 4.2 39 982-1021 6-47 (304)
340 2xxa_A Signal recognition part 92.5 1.2 4E-05 54.7 15.2 29 208-236 99-127 (433)
341 2ck3_D ATP synthase subunit be 92.5 0.23 7.8E-06 60.5 8.6 52 210-264 154-206 (482)
342 2x8a_A Nuclear valosin-contain 92.4 0.38 1.3E-05 55.3 10.2 125 1002-1147 47-192 (274)
343 1n0w_A DNA repair protein RAD5 92.2 0.26 8.8E-06 55.6 8.5 90 999-1089 24-130 (243)
344 3dm5_A SRP54, signal recogniti 92.2 1.1 3.7E-05 54.7 14.1 29 208-236 99-127 (443)
345 2r8r_A Sensor protein; KDPD, P 92.1 0.13 4.3E-06 56.5 5.3 27 210-236 7-33 (228)
346 1rz3_A Hypothetical protein rb 92.1 0.17 5.9E-06 55.3 6.4 44 191-234 3-47 (201)
347 3hws_A ATP-dependent CLP prote 92.1 0.093 3.2E-06 63.5 4.7 48 187-234 16-76 (363)
348 1s96_A Guanylate kinase, GMP k 92.0 0.35 1.2E-05 53.5 8.8 26 209-234 16-41 (219)
349 3hyn_A Putative signal transdu 91.9 0.39 1.3E-05 49.5 8.1 89 15-108 5-116 (189)
350 3c8u_A Fructokinase; YP_612366 91.9 0.12 4E-06 57.0 4.8 39 196-234 9-47 (208)
351 3kb2_A SPBC2 prophage-derived 91.8 0.08 2.7E-06 56.2 3.3 25 210-234 2-26 (173)
352 3bh0_A DNAB-like replicative h 91.8 0.3 1E-05 57.6 8.5 54 190-244 50-103 (315)
353 3hr8_A Protein RECA; alpha and 91.7 0.27 9.1E-06 58.5 7.9 84 999-1089 61-150 (356)
354 3io5_A Recombination and repai 91.6 0.3 1E-05 56.2 7.8 48 196-244 12-65 (333)
355 1fx0_B ATP synthase beta chain 91.6 0.27 9.4E-06 60.1 7.9 52 210-264 166-218 (498)
356 1xp8_A RECA protein, recombina 91.5 0.34 1.2E-05 58.0 8.6 56 190-245 54-110 (366)
357 1v5w_A DMC1, meiotic recombina 91.5 0.51 1.7E-05 56.3 10.1 56 999-1055 122-181 (343)
358 3vaa_A Shikimate kinase, SK; s 91.4 0.091 3.1E-06 57.5 3.3 25 209-233 25-49 (199)
359 3trf_A Shikimate kinase, SK; a 91.4 0.091 3.1E-06 56.6 3.2 25 209-233 5-29 (185)
360 1xp8_A RECA protein, recombina 91.3 0.36 1.2E-05 57.8 8.6 84 999-1089 74-163 (366)
361 3m6a_A ATP-dependent protease 91.3 0.89 3E-05 57.8 12.7 24 998-1021 107-130 (543)
362 2i1q_A DNA repair and recombin 91.3 0.32 1.1E-05 57.7 8.1 89 999-1088 98-214 (322)
363 3rfe_A Platelet glycoprotein I 91.3 0.23 7.8E-06 49.9 5.8 16 1466-1481 52-67 (130)
364 3rfe_A Platelet glycoprotein I 91.2 0.25 8.5E-06 49.6 6.0 53 1401-1457 12-67 (130)
365 1odf_A YGR205W, hypothetical 3 91.2 0.18 6.1E-06 58.5 5.5 30 206-235 28-57 (290)
366 3io5_A Recombination and repai 91.1 0.48 1.6E-05 54.6 8.8 84 1001-1089 30-122 (333)
367 2z43_A DNA repair and recombin 91.1 0.42 1.4E-05 56.6 8.8 89 999-1088 107-213 (324)
368 3lw7_A Adenylate kinase relate 90.8 0.11 3.8E-06 55.2 3.2 20 210-229 2-21 (179)
369 4h09_A Hypothetical leucine ri 90.8 0.79 2.7E-05 55.6 11.3 101 1394-1499 214-317 (379)
370 3sr0_A Adenylate kinase; phosp 90.7 0.3 1E-05 53.4 6.5 23 211-233 2-24 (206)
371 2ga8_A Hypothetical 39.9 kDa p 90.7 0.12 4E-06 60.9 3.4 48 190-237 3-52 (359)
372 2px0_A Flagellar biosynthesis 90.6 0.63 2.2E-05 54.0 9.5 27 208-234 104-130 (296)
373 1jr3_D DNA polymerase III, del 90.5 0.47 1.6E-05 56.7 8.7 151 208-384 17-179 (343)
374 2px0_A Flagellar biosynthesis 90.5 0.39 1.3E-05 55.8 7.6 25 998-1022 104-128 (296)
375 1nks_A Adenylate kinase; therm 90.4 0.2 7E-06 54.1 4.9 26 210-235 2-27 (194)
376 1u94_A RECA protein, recombina 90.4 0.31 1E-05 58.2 6.7 83 999-1088 63-151 (356)
377 1zuh_A Shikimate kinase; alpha 90.4 0.13 4.5E-06 54.3 3.2 26 209-234 7-32 (168)
378 4h09_A Hypothetical leucine ri 90.3 0.93 3.2E-05 54.9 11.3 122 1373-1499 215-340 (379)
379 1ly1_A Polynucleotide kinase; 90.3 0.14 4.7E-06 54.8 3.3 22 210-231 3-24 (181)
380 1kag_A SKI, shikimate kinase I 90.2 0.12 3.9E-06 55.0 2.6 25 210-234 5-29 (173)
381 3tlx_A Adenylate kinase 2; str 90.2 0.17 5.9E-06 57.1 4.2 41 193-233 13-53 (243)
382 1v5w_A DMC1, meiotic recombina 90.1 0.89 3.1E-05 54.1 10.5 49 196-244 109-163 (343)
383 2rhm_A Putative kinase; P-loop 90.0 0.18 6.3E-06 54.5 4.1 25 209-233 5-29 (193)
384 1ex7_A Guanylate kinase; subst 90.0 0.11 3.9E-06 55.6 2.4 28 210-237 2-29 (186)
385 1zu4_A FTSY; GTPase, signal re 90.0 0.38 1.3E-05 56.6 7.0 36 208-244 104-139 (320)
386 3iij_A Coilin-interacting nucl 90.0 0.12 4.1E-06 55.4 2.5 25 209-233 11-35 (180)
387 3uie_A Adenylyl-sulfate kinase 90.0 0.24 8.1E-06 54.1 5.0 27 208-234 24-50 (200)
388 1jr3_D DNA polymerase III, del 90.0 1.8 6.2E-05 51.6 13.3 157 998-1176 17-184 (343)
389 2pt7_A CAG-ALFA; ATPase, prote 90.0 0.37 1.3E-05 57.0 6.9 103 211-329 173-276 (330)
390 3nbx_X ATPase RAVA; AAA+ ATPas 89.9 0.16 5.3E-06 63.6 3.8 45 186-234 22-66 (500)
391 4a1f_A DNAB helicase, replicat 89.9 0.45 1.5E-05 56.1 7.4 71 188-265 26-96 (338)
392 1g8p_A Magnesium-chelatase 38 89.8 0.15 5.2E-06 61.2 3.5 49 184-234 22-70 (350)
393 1zp6_A Hypothetical protein AT 89.8 0.18 6E-06 54.6 3.7 24 209-232 9-32 (191)
394 1tue_A Replication protein E1; 89.7 0.22 7.5E-06 53.5 4.2 44 191-235 41-84 (212)
395 2ewv_A Twitching motility prot 89.6 0.63 2.2E-05 56.0 8.7 110 208-329 135-245 (372)
396 2yvu_A Probable adenylyl-sulfa 89.6 0.25 8.7E-06 53.1 4.7 27 209-235 13-39 (186)
397 1via_A Shikimate kinase; struc 89.6 0.16 5.5E-06 54.1 3.1 24 211-234 6-29 (175)
398 2r2a_A Uncharacterized protein 89.5 0.54 1.9E-05 51.0 7.3 22 211-232 7-28 (199)
399 4eun_A Thermoresistant glucoki 89.5 0.22 7.4E-06 54.4 4.2 25 209-233 29-53 (200)
400 2ze6_A Isopentenyl transferase 89.5 0.18 6E-06 57.5 3.6 25 210-234 2-26 (253)
401 1kgd_A CASK, peripheral plasma 89.5 0.18 6.1E-06 54.1 3.4 26 209-234 5-30 (180)
402 2jaq_A Deoxyguanosine kinase; 89.3 0.18 6E-06 55.3 3.3 24 211-234 2-25 (205)
403 2qgz_A Helicase loader, putati 89.3 0.11 3.9E-06 60.9 1.8 24 710-733 153-176 (308)
404 1xjc_A MOBB protein homolog; s 89.2 0.27 9.3E-06 51.6 4.4 29 208-236 3-31 (169)
405 3kl4_A SRP54, signal recogniti 89.2 0.88 3E-05 55.5 9.6 29 208-236 96-124 (433)
406 1kht_A Adenylate kinase; phosp 89.2 0.18 6.1E-06 54.5 3.2 25 210-234 4-28 (192)
407 2zr9_A Protein RECA, recombina 89.2 0.63 2.1E-05 55.5 8.2 84 999-1089 61-150 (349)
408 3t61_A Gluconokinase; PSI-biol 89.2 0.15 5.2E-06 55.8 2.6 25 209-233 18-42 (202)
409 3l0o_A Transcription terminati 89.2 0.078 2.7E-06 62.4 0.2 29 209-237 175-203 (427)
410 3fwy_A Light-independent proto 89.1 0.29 1E-05 57.3 5.1 38 207-244 46-83 (314)
411 2c95_A Adenylate kinase 1; tra 89.0 0.21 7.2E-06 54.2 3.6 25 209-233 9-33 (196)
412 2vli_A Antibiotic resistance p 89.0 0.16 5.4E-06 54.5 2.6 25 210-234 6-30 (183)
413 2pjz_A Hypothetical protein ST 88.9 1.5 5E-05 49.9 10.6 24 210-233 31-54 (263)
414 2bdt_A BH3686; alpha-beta prot 88.8 0.29 9.9E-06 52.8 4.5 22 210-231 3-24 (189)
415 1knq_A Gluconate kinase; ALFA/ 88.7 0.26 9E-06 52.4 4.0 25 209-233 8-32 (175)
416 2cbz_A Multidrug resistance-as 88.6 1.1 3.6E-05 50.3 9.1 24 210-233 32-55 (237)
417 1e6c_A Shikimate kinase; phosp 88.6 0.18 6E-06 53.6 2.6 23 211-233 4-26 (173)
418 1y63_A LMAJ004144AAA protein; 88.6 0.22 7.6E-06 53.5 3.4 24 209-232 10-33 (184)
419 1ukz_A Uridylate kinase; trans 88.5 0.25 8.5E-06 54.0 3.8 26 208-233 14-39 (203)
420 2iyv_A Shikimate kinase, SK; t 88.5 0.21 7.3E-06 53.6 3.2 23 211-233 4-26 (184)
421 1rz3_A Hypothetical protein rb 88.5 0.35 1.2E-05 52.7 5.0 38 984-1021 4-44 (201)
422 2bwj_A Adenylate kinase 5; pho 88.5 0.22 7.7E-06 54.1 3.4 25 210-234 13-37 (199)
423 3cm0_A Adenylate kinase; ATP-b 88.5 0.24 8.2E-06 53.3 3.6 24 210-233 5-28 (186)
424 3lw7_A Adenylate kinase relate 88.4 0.21 7.1E-06 53.0 3.0 20 1000-1019 2-21 (179)
425 1tev_A UMP-CMP kinase; ploop, 88.4 0.24 8.1E-06 53.7 3.5 24 210-233 4-27 (196)
426 2pt5_A Shikimate kinase, SK; a 88.4 0.24 8.1E-06 52.3 3.4 24 211-234 2-25 (168)
427 1uf9_A TT1252 protein; P-loop, 88.3 0.27 9.2E-06 53.7 3.9 25 208-232 7-31 (203)
428 2plr_A DTMP kinase, probable t 88.3 0.36 1.2E-05 53.1 4.9 27 210-236 5-31 (213)
429 1sky_E F1-ATPase, F1-ATP synth 88.3 0.62 2.1E-05 56.9 7.2 89 1000-1089 152-256 (473)
430 1uj2_A Uridine-cytidine kinase 88.2 0.25 8.7E-06 56.1 3.7 27 208-234 21-47 (252)
431 3tau_A Guanylate kinase, GMP k 88.2 0.24 8E-06 54.5 3.3 27 209-235 8-34 (208)
432 1nn5_A Similar to deoxythymidy 88.1 0.35 1.2E-05 53.3 4.7 28 209-236 9-36 (215)
433 2j9r_A Thymidine kinase; TK1, 88.1 0.72 2.5E-05 50.1 6.9 110 209-329 28-139 (214)
434 2qt1_A Nicotinamide riboside k 88.1 0.28 9.7E-06 53.8 3.9 26 208-233 20-45 (207)
435 3p32_A Probable GTPase RV1496/ 88.0 0.59 2E-05 56.0 7.0 42 195-236 65-106 (355)
436 1aky_A Adenylate kinase; ATP:A 88.0 0.24 8.3E-06 54.9 3.3 25 209-233 4-28 (220)
437 3a00_A Guanylate kinase, GMP k 87.9 0.26 8.7E-06 53.1 3.3 29 210-238 2-30 (186)
438 1qf9_A UMP/CMP kinase, protein 87.9 0.28 9.6E-06 53.0 3.7 25 209-233 6-30 (194)
439 2if2_A Dephospho-COA kinase; a 87.8 0.26 8.9E-06 53.9 3.3 21 211-231 3-23 (204)
440 2qor_A Guanylate kinase; phosp 87.8 0.2 7E-06 54.8 2.5 26 209-234 12-37 (204)
441 2cdn_A Adenylate kinase; phosp 87.7 0.27 9.4E-06 53.6 3.4 25 209-233 20-44 (201)
442 3lda_A DNA repair protein RAD5 87.6 1.1 3.8E-05 54.2 9.0 57 999-1056 178-238 (400)
443 3kb2_A SPBC2 prophage-derived 87.6 0.26 8.8E-06 52.2 3.1 21 1000-1020 2-22 (173)
444 2grj_A Dephospho-COA kinase; T 87.5 0.27 9.3E-06 53.1 3.2 25 208-232 11-35 (192)
445 3c8u_A Fructokinase; YP_612366 87.3 0.43 1.5E-05 52.4 4.7 36 986-1021 7-44 (208)
446 3vr4_D V-type sodium ATPase su 87.3 0.64 2.2E-05 56.2 6.5 25 211-235 153-177 (465)
447 1ypw_A Transitional endoplasmi 87.3 1.1 3.7E-05 59.9 9.5 129 999-1148 238-387 (806)
448 1gvn_B Zeta; postsegregational 87.3 0.46 1.6E-05 55.1 5.1 26 208-233 32-57 (287)
449 2dr3_A UPF0273 protein PH0284; 87.2 0.34 1.2E-05 54.7 4.0 36 209-244 23-58 (247)
450 2c61_A A-type ATP synthase non 87.2 0.62 2.1E-05 56.8 6.3 25 210-234 153-177 (469)
451 2xxa_A Signal recognition part 87.2 0.99 3.4E-05 55.3 8.3 26 998-1023 99-124 (433)
452 1g41_A Heat shock protein HSLU 87.2 0.42 1.4E-05 58.3 4.9 50 187-236 16-77 (444)
453 3e1s_A Exodeoxyribonuclease V, 87.2 1 3.5E-05 57.6 8.7 27 210-236 205-231 (574)
454 1cke_A CK, MSSA, protein (cyti 87.1 0.29 9.9E-06 54.6 3.3 24 210-233 6-29 (227)
455 1qhx_A CPT, protein (chloramph 87.1 0.28 9.6E-06 52.3 3.0 22 1000-1021 4-25 (178)
456 3ney_A 55 kDa erythrocyte memb 87.1 0.29 9.9E-06 52.8 3.1 27 208-234 18-44 (197)
457 2wwf_A Thymidilate kinase, put 87.1 0.3 1E-05 53.8 3.3 27 209-235 10-36 (212)
458 2pbr_A DTMP kinase, thymidylat 87.1 0.3 1E-05 52.9 3.3 24 211-234 2-25 (195)
459 3a4m_A L-seryl-tRNA(SEC) kinas 87.0 0.32 1.1E-05 55.6 3.5 26 209-234 4-29 (260)
460 1pzn_A RAD51, DNA repair and r 87.0 1.1 3.9E-05 53.3 8.5 87 1000-1087 132-240 (349)
461 1tf7_A KAIC; homohexamer, hexa 86.9 2.1 7.4E-05 54.2 11.6 39 197-235 269-307 (525)
462 3ice_A Transcription terminati 86.9 0.3 1E-05 57.6 3.3 91 998-1089 173-272 (422)
463 3umf_A Adenylate kinase; rossm 86.9 0.36 1.2E-05 53.1 3.7 27 207-233 27-53 (217)
464 2w0m_A SSO2452; RECA, SSPF, un 86.8 0.85 2.9E-05 50.8 7.0 46 1000-1049 24-69 (235)
465 1jjv_A Dephospho-COA kinase; P 86.8 0.3 1E-05 53.5 3.1 22 210-231 3-24 (206)
466 3tqc_A Pantothenate kinase; bi 86.8 0.42 1.5E-05 55.9 4.5 47 188-234 69-117 (321)
467 1zp6_A Hypothetical protein AT 86.8 0.32 1.1E-05 52.5 3.4 24 999-1022 9-32 (191)
468 2ffh_A Protein (FFH); SRP54, s 86.7 1.6 5.3E-05 53.2 9.6 36 208-244 97-132 (425)
469 1xx6_A Thymidine kinase; NESG, 86.7 0.44 1.5E-05 51.3 4.2 110 209-329 8-119 (191)
470 3bh0_A DNAB-like replicative h 86.7 1.3 4.5E-05 52.0 8.7 51 999-1053 68-118 (315)
471 4a74_A DNA repair and recombin 86.7 0.55 1.9E-05 52.3 5.3 37 197-233 13-49 (231)
472 3vaa_A Shikimate kinase, SK; s 86.6 0.33 1.1E-05 52.9 3.2 23 999-1021 25-47 (199)
473 3gqb_B V-type ATP synthase bet 86.5 0.66 2.3E-05 56.2 6.0 24 211-234 149-172 (464)
474 3bgw_A DNAB-like replicative h 86.5 0.79 2.7E-05 56.6 7.0 53 190-243 179-231 (444)
475 3k1j_A LON protease, ATP-depen 86.5 0.37 1.3E-05 62.4 4.3 50 183-236 38-87 (604)
476 1zd8_A GTP:AMP phosphotransfer 86.4 0.34 1.2E-05 54.0 3.4 25 209-233 7-31 (227)
477 3asz_A Uridine kinase; cytidin 86.4 0.38 1.3E-05 52.9 3.7 27 208-234 5-31 (211)
478 1u94_A RECA protein, recombina 86.4 0.76 2.6E-05 54.8 6.5 56 190-245 43-99 (356)
479 1zak_A Adenylate kinase; ATP:A 86.4 0.32 1.1E-05 54.1 3.1 26 209-234 5-30 (222)
480 2q6t_A DNAB replication FORK h 86.4 1.5 5E-05 54.4 9.4 71 189-266 181-252 (444)
481 4gp7_A Metallophosphoesterase; 86.4 0.28 9.7E-06 52.0 2.5 22 209-230 9-30 (171)
482 3nwj_A ATSK2; P loop, shikimat 86.4 0.28 9.7E-06 55.3 2.6 25 210-234 49-73 (250)
483 1n0w_A DNA repair protein RAD5 86.4 0.48 1.6E-05 53.3 4.6 49 196-244 11-65 (243)
484 1j8m_F SRP54, signal recogniti 86.3 0.77 2.6E-05 53.3 6.4 28 209-236 98-125 (297)
485 2j41_A Guanylate kinase; GMP, 86.3 0.33 1.1E-05 53.1 3.1 24 210-233 7-30 (207)
486 1g5t_A COB(I)alamin adenosyltr 86.2 0.3 1E-05 52.3 2.5 114 1000-1117 29-164 (196)
487 3tr0_A Guanylate kinase, GMP k 86.2 0.34 1.2E-05 53.0 3.1 24 210-233 8-31 (205)
488 3upu_A ATP-dependent DNA helic 86.1 2.1 7.2E-05 53.3 10.7 27 211-237 47-73 (459)
489 2pez_A Bifunctional 3'-phospho 86.1 0.41 1.4E-05 51.0 3.7 26 209-234 5-30 (179)
490 3fb4_A Adenylate kinase; psych 86.0 0.36 1.2E-05 53.3 3.3 23 211-233 2-24 (216)
491 1kgd_A CASK, peripheral plasma 86.0 0.35 1.2E-05 51.7 3.0 22 1000-1021 6-27 (180)
492 1gtv_A TMK, thymidylate kinase 85.9 0.28 9.5E-06 54.1 2.3 25 211-235 2-26 (214)
493 2bbw_A Adenylate kinase 4, AK4 85.9 0.37 1.3E-05 54.6 3.3 25 209-233 27-51 (246)
494 2zr9_A Protein RECA, recombina 85.8 0.52 1.8E-05 56.2 4.6 53 193-245 44-97 (349)
495 1ls1_A Signal recognition part 85.8 1.8 6.3E-05 50.1 9.2 36 208-244 97-132 (295)
496 1kag_A SKI, shikimate kinase I 85.7 0.31 1.1E-05 51.6 2.4 22 1000-1021 5-26 (173)
497 2p5t_B PEZT; postsegregational 85.7 0.58 2E-05 53.1 4.8 27 208-234 31-57 (253)
498 2z0h_A DTMP kinase, thymidylat 85.7 0.39 1.3E-05 52.1 3.3 25 211-235 2-26 (197)
499 3dl0_A Adenylate kinase; phosp 85.6 0.38 1.3E-05 53.2 3.2 23 211-233 2-24 (216)
500 2og2_A Putative signal recogni 85.6 0.79 2.7E-05 54.5 6.1 36 208-244 156-191 (359)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.8e-44 Score=382.69 Aligned_cols=172 Identities=35% Similarity=0.661 Sum_probs=159.3
Q ss_pred CCCCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhh
Q 000202 8 PPRNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWC 86 (1866)
Q Consensus 8 ~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c 86 (1866)
|++.+.++|||||||+|+|+|.+|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|||||+||++|.||
T Consensus 28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred cCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence 4456789999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-CCCEEEEEEEEecCCcccccccchhhhHHHHhhcch-hhhhhHHHHHHhhhccCCCcccccCccch
Q 000202 87 LDELLKILECKRN-YGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERFP-YKMRNWRSALTEAADLSGFDSCVIRPESR 164 (1866)
Q Consensus 87 ~~El~~~~~~~~~-~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~-~~~~~wr~al~~~a~~~g~~~~~~~~e~~ 164 (1866)
++||++|++|.++ ++++|+||||+|+|++||+|+|+||+||++|++++. +++++||.||++||+++||++.....+++
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 9999999999865 689999999999999999999999999999999875 67999999999999999999999888899
Q ss_pred hhhhhHHHHhhcccc
Q 000202 165 LVADIANEVLERLDD 179 (1866)
Q Consensus 165 ~i~~i~~~v~~~l~~ 179 (1866)
+|++|+++|+++|+.
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998763
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=6.8e-44 Score=373.91 Aligned_cols=169 Identities=42% Similarity=0.701 Sum_probs=143.8
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDEL 90 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El 90 (1866)
..++|||||||+|+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 458999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHHhhcc-hhhhhhHHHHHHhhhccCCCcccccCccchhhhhh
Q 000202 91 LKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFMLEERF-PYKMRNWRSALTEAADLSGFDSCVIRPESRLVADI 169 (1866)
Q Consensus 91 ~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~-~~~~~~wr~al~~~a~~~g~~~~~~~~e~~~i~~i 169 (1866)
++|++|.+.++++|+||||+|+|++||+|+|+||+||++|+++. .+++++||.||++||+++||++. .+|+++|++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~I 162 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKI 162 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHH
Confidence 99999998899999999999999999999999999999999873 57899999999999999999994 5699999999
Q ss_pred HHHHhhccccccc
Q 000202 170 ANEVLERLDDTFQ 182 (1866)
Q Consensus 170 ~~~v~~~l~~~~~ 182 (1866)
|++|.++|+..+|
T Consensus 163 v~~v~~~l~~~~~ 175 (176)
T 3jrn_A 163 ANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHTTCC----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999987765
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.5e-41 Score=436.48 Aligned_cols=303 Identities=11% Similarity=0.169 Sum_probs=244.5
Q ss_pred hhhHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhc--CcccccccceEEEEEecCCC--CHHHHHHHHHHHh
Q 000202 982 YTQRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALIS--YPEVKVMFHVIIWVTVSRYW--NTRKIQKQVLRQL 1054 (1866)
Q Consensus 982 ~~~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l 1054 (1866)
||++++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...+++.|+.++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 888999999999843 3578999999999999999999998 68889999999999999985 8999999999999
Q ss_pred ccCCC-------CccCHHHHHHHHHHHhCCC-cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCC-CC
Q 000202 1055 SLHCK-------DRETDAQVAEKLWQVLNGE-KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMD-VN 1125 (1866)
Q Consensus 1055 ~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~-~~ 1125 (1866)
+.... ...+..++...+++.|+++ ||||||||||+..++ .+. ..+||+||||||++.++..++ ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 212 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCE
T ss_pred hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCC
Confidence 86521 2234567789999999996 999999999997754 111 127999999999999999876 44
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCcccccc
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPITIEEC 1205 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~ 1205 (1866)
.+|+|++|+.++||+||.++++....++++.+++++|+++|+|+||||+++|+.|+.+ . |+.+ +.+.... ...
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l--~~~ 358 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL--ESR 358 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH--HHH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh--hcc
Confidence 6899999999999999999988765557888999999999999999999999999764 2 4333 1111000 000
Q ss_pred chhhHHHHHHHhHhccCCcchhHHHH-----------hhcCCCCCccccHHHHHHHHHHc--Cccchhh--HhHHHhHHH
Q 000202 1206 CTEDLIELLKFSFDQLKDHDVKSCFL-----------HCSLFPEDREVSIVEFIDYCIQE--GIIVGTL--ANAHKRGHQ 1270 (1866)
Q Consensus 1206 ~~~~i~~~l~~Sy~~L~~~~lk~cfl-----------y~s~Fp~~~~i~~~~Li~~W~ae--G~i~~~~--~~~~~~~~~ 1270 (1866)
...++.+++.+||++||++ +|.||+ |||+||+++.|+ +++|+|+ ||+.... ...++.++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 2345788899999999987 999999 999999999999 8899999 9997553 23566666
Q ss_pred HHHHHHHhhhhhcccc--cCcccchhHHHHHHHHH
Q 000202 1271 IVDVLVDASLLLINEV--HNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1271 ~~~~L~~~sll~~~~~--~~~~~mhdlv~dla~~i 1303 (1866)
++++|+++||++.... ...|+|||+||++|..+
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~ 467 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHV 467 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTT
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHH
Confidence 9999999999997542 45799999999999876
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.8e-36 Score=385.28 Aligned_cols=283 Identities=17% Similarity=0.189 Sum_probs=231.7
Q ss_pred chhhHHHHHHHHHhcc-CCccEEEEEcCCCchHHHHHHHHhcCcccccccce-EEEEEecCCCCHHHHHHHHHHHhccCC
Q 000202 981 NYTQRNVRKIFRYVND-VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHV-IIWVTVSRYWNTRKIQKQVLRQLSLHC 1058 (1866)
Q Consensus 981 ~~~~~~~~~i~~~l~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~~ 1058 (1866)
+||++++++|.++|.+ ...++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++...
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 6888999999988854 45789999999999999999999988888899986 999999999999888888887654211
Q ss_pred ---CC--------ccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCC
Q 000202 1059 ---KD--------RETDAQVAEKLWQVL---NGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDV 1124 (1866)
Q Consensus 1059 ---~~--------~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~ 1124 (1866)
.. ..+.+.+...+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+..
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCC
Confidence 10 112345566777766 7899999999999998898762 68999999999999865443
Q ss_pred CcEEEec------CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCC-CHHHHHHHhhhCC
Q 000202 1125 NMVVKLE------TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGER-NVSVWKHASRKFS 1197 (1866)
Q Consensus 1125 ~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~-~~~~w~~~~~~~~ 1197 (1866)
...|.|+ +|+.+|||+||.+..+.. . .++..+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----- 350 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----- 350 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-----
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHHcCCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-----
Confidence 3467777 999999999999985432 1 2223333 9999999999999999763 67788763
Q ss_pred CCccccccchhhHHHHHHHhHhccCCcch-hHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHH
Q 000202 1198 LPITIEECCTEDLIELLKFSFDQLKDHDV-KSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLV 1276 (1866)
Q Consensus 1198 ~~~~~~~~~~~~i~~~l~~Sy~~L~~~~l-k~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~ 1276 (1866)
....+..+|++||+.||++ . |+||+|||+||+++.|+++.++.+|+++|. +.+..++++|+
T Consensus 351 --------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe---------edAe~~L~eLv 412 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---------SDVMVVVNKLH 412 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS---------HHHHHHHHHHH
T ss_pred --------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH---------HHHHHHHHHHH
Confidence 1357999999999999998 7 999999999999999999999999999982 35788999999
Q ss_pred HhhhhhcccccCcccchhHHHHHHH
Q 000202 1277 DASLLLINEVHNSIRMPGLMKDLAF 1301 (1866)
Q Consensus 1277 ~~sll~~~~~~~~~~mhdlv~dla~ 1301 (1866)
++||++..+....|+|||++++++.
T Consensus 413 dRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 413 KYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp TSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred hhCCEEEeCCCCEEEehHHHHHHhc
Confidence 9999998655678999999999763
No 5
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=1.9e-32 Score=355.50 Aligned_cols=262 Identities=16% Similarity=0.196 Sum_probs=206.7
Q ss_pred eeehhhHHHHHHhhhcC-CCCcEEEEEEecCCCchhHHHHHHHH----hhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 189 IGVEWRIKEIESLLRTG-SAGVYKLGIWGIGGIGKTTIAGAVFN----KISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ ++..+|++++|+.+.+... .....++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP--KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST--THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCC--CCHHHHHHHHH
Confidence 49999999999999754 34689999999999999999999996 7889999999996554321 24577888888
Q ss_pred HHHhcccc---ccCccch----hHHHHHHHhhcC-cEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchhccCc
Q 000202 264 SKLLNDRN---VKNFQNI----SVNFQSKRLARK-KVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVLTNCE 335 (1866)
Q Consensus 264 ~~~~~~~~---~~~~~~~----~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~ 335 (1866)
.++..... ....... ....+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88875532 1111111 136788889996 999999999998876 3322 27999999999999998775
Q ss_pred -cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH-HhccCCC
Q 000202 336 -VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR-KLEIVPH 413 (1866)
Q Consensus 336 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~-~l~~~~~ 413 (1866)
...+|+|++|+.+||++||.+++|.... .+.+.+++.+|+++|+|+||||+++|+.|+.++. +|...+. .+.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4578999999999999999999986543 4677889999999999999999999999988753 3333333 2333246
Q ss_pred chhhhhhhcccCCCChhhHHHHH-----------HHHHHhHHhhcccCCCCCCCeeeecchh--HHHHH
Q 000202 414 MEIQEVLKISYDSLDDSQKRMHD-----------LLRAMGREIVRKESIVDPGKRSRLWHDE--DIYEV 469 (1866)
Q Consensus 414 ~~i~~~l~~Sy~~L~~~~k~~~~-----------~l~~~~~~i~~~~~~~~~~~~~rlW~~e--~~~~~ 469 (1866)
.++..+|.+||+.||++.|.||. +|+ +||+++.++ +++|+++ |++..
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls-----~fp~~~~i~----i~~w~a~~~G~i~~ 420 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAV-----VMPPGVDIP----VKLWSCVIPVDICS 420 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGG-----SSCTTCCEE----HHHHHHHSCC----
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhhee-----eeCCCCeee----eeeeeeeccceecc
Confidence 67999999999999999999999 888 999888776 8899999 88864
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=9.7e-32 Score=389.56 Aligned_cols=304 Identities=20% Similarity=0.261 Sum_probs=244.1
Q ss_pred ccchhhHHHHHHHHHhc--cCCccEEEEEcCCCchHHHHHHHHhcCccc-cccc-ceEEEEEecCCCC--HHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN--DVTASKIGVYGVGGIGKTAALKALISYPEV-KVMF-HVIIWVTVSRYWN--TRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~~~~~i~~ 1052 (1866)
.|+||++++++|.+.|. +...++|+|+||||+||||||+++|+..+. ..+| +.++||++++..+ ....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 57899999999999983 456789999999999999999999877544 4444 6788999998543 3445667777
Q ss_pred HhccCCC----CccCHHHHHHHHHHHhCCC--cEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhcc-CCCC
Q 000202 1053 QLSLHCK----DRETDAQVAEKLWQVLNGE--KFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRN-MDVN 1125 (1866)
Q Consensus 1053 ~l~~~~~----~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~ 1125 (1866)
.+..... ...+.+++...++..|.++ |+||||||||+..+|+.+ .+||+||||||++.++.. +...
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCB
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCc
Confidence 7765432 2346778888999999887 999999999998888765 478999999999999854 4556
Q ss_pred cEEEecC-CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCc----
Q 000202 1126 MVVKLET-LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPI---- 1200 (1866)
Q Consensus 1126 ~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~---- 1200 (1866)
..+.+++ |+.++|++||...++... ++..+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~--~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKK--EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCS--TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCS
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCCh--hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhc
Confidence 7899996 999999999999885432 33456789999999999999999999998753 45777665442111
Q ss_pred -cccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHHhh
Q 000202 1201 -TIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVDAS 1279 (1866)
Q Consensus 1201 -~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~~s 1279 (1866)
.......+.+..+|.+||+.||++ .|.||+|||+||+++.|++..++.+|.+++ +.++.++++|+++|
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~----------~~~~~~l~~L~~~s 422 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET----------EEVEDILQEFVNKS 422 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH----------HHHHHHHHHHHHTT
T ss_pred ccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH----------HHHHHHHHHHHhcc
Confidence 011112357999999999999998 899999999999999999999999997763 56788999999999
Q ss_pred hhhcccccC--cccchhHHHHHHHHHh
Q 000202 1280 LLLINEVHN--SIRMPGLMKDLAFGIL 1304 (1866)
Q Consensus 1280 ll~~~~~~~--~~~mhdlv~dla~~i~ 1304 (1866)
|++...... .|+||++||++++...
T Consensus 423 l~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 423 LLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp SCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred ceEEecCCCceEEEecHHHHHHHHhhh
Confidence 998754332 5999999999998763
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=332.62 Aligned_cols=301 Identities=18% Similarity=0.250 Sum_probs=233.0
Q ss_pred ccchhhHHHHHHHHHhc--cCCccEEEEEcCCCchHHHHHHHHhcCccc-cccc-ceEEEEEecCCCCHHHHHHHH---H
Q 000202 979 AVNYTQRNVRKIFRYVN--DVTASKIGVYGVGGIGKTAALKALISYPEV-KVMF-HVIIWVTVSRYWNTRKIQKQV---L 1051 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i---~ 1051 (1866)
.++||+++++++.+.+. ....++|+|+||||+||||||+++|+...+ ...| +.++|++++.. +...+...+ +
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC 203 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHH
Confidence 47889999999999986 345789999999999999999999887666 7789 58999999875 333444433 3
Q ss_pred HHhccC----CCCccCHHHHHHHHHHHhCC--CcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChhhhccCCCC
Q 000202 1052 RQLSLH----CKDRETDAQVAEKLWQVLNG--EKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELDVCRNMDVN 1125 (1866)
Q Consensus 1052 ~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~ 1125 (1866)
..++.. .....+.......++..+.+ +++||||||+|+...++.+ ..|++||||||+..++..+. .
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~ 275 (591)
T 1z6t_A 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-G 275 (591)
T ss_dssp HHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-S
T ss_pred HHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-C
Confidence 444421 12334567777888888876 7899999999987766543 46899999999999887654 3
Q ss_pred cEEEe---cCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhhCCCCHHHHHHHhhhCCCCc--
Q 000202 1126 MVVKL---ETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALAGERNVSVWKHASRKFSLPI-- 1200 (1866)
Q Consensus 1126 ~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~~~~~~~~w~~~~~~~~~~~-- 1200 (1866)
..+++ ++|+.++|++||.+.++.. .+...+.+.+|+++|+|+||||..+|+.|+... ..|...++.+....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~ 351 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFK 351 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHH
Confidence 45665 4899999999999988752 122345688999999999999999999998743 36877665432111
Q ss_pred ---cccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccchhhHhHHHhHHHHHHHHHH
Q 000202 1201 ---TIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVGTLANAHKRGHQIVDVLVD 1277 (1866)
Q Consensus 1201 ---~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~~~~~~~~~~~~~~~~L~~ 1277 (1866)
.........+..++..||+.||++ .|.||++||+||+|+.|+...++.+|.+++ +.+..+++.|++
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~----------~~~~~~l~~L~~ 420 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET----------EEVEDILQEFVN 420 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH----------HHHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH----------HHHHHHHHHHHh
Confidence 001112357999999999999998 899999999999999999999999996642 346789999999
Q ss_pred hhhhhcccc--cCcccchhHHHHHHHHH
Q 000202 1278 ASLLLINEV--HNSIRMPGLMKDLAFGI 1303 (1866)
Q Consensus 1278 ~sll~~~~~--~~~~~mhdlv~dla~~i 1303 (1866)
+||++.... ...|+||+++++++...
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999986443 34799999999999765
No 8
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=1.5e-28 Score=316.95 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=185.8
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHH--hhhccccc-eEEEEeeccccccccHHHHHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFN--KISRHFEG-SYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+..... .....++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHHH
Confidence 4599999999999999853 2478999999999999999999997 57889997 556654433 22334444444
Q ss_pred HHHhccc---c-ccC----c-cc--hhHHHHHHHh---hcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 264 SKLLNDR---N-VKN----F-QN--ISVNFQSKRL---ARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 264 ~~~~~~~---~-~~~----~-~~--~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
..+.... . ... . .. ...+.+++.| ++||+||||||||+.++|+.+. +||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 3322110 0 000 0 00 0123455544 6799999999999999998762 6899999999999
Q ss_pred hhccCccceeeecC------CCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCC--CHHHH
Q 000202 330 VLTNCEVDHIYQMK------ELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGR--SKEEW 401 (1866)
Q Consensus 330 v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~--~~~~w 401 (1866)
++..+....+|+|+ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+.|+++ +.++|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 88654444567777 999999999999884 322 12233333 999999999999999977 77888
Q ss_pred HHHHHHhccCCCchhhhhhhcccCCCChhh-HHHHHHHHHHhHHhhcccCCCCCCCeeeecchhH
Q 000202 402 ESAMRKLEIVPHMEIQEVLKISYDSLDDSQ-KRMHDLLRAMGREIVRKESIVDPGKRSRLWHDED 465 (1866)
Q Consensus 402 ~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~-k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e~ 465 (1866)
+.. ....+..+|++||+.|++++ |.||.+|+ +||++..++...+.++|.+++
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LA-----IFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTT-----SSCTTSCEEHHHHHHHHCSSC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHh-----CCCCCCCCCHHHHHHHhcCCC
Confidence 753 35679999999999999999 99999999 999998888788889998774
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.4e-27 Score=345.90 Aligned_cols=268 Identities=19% Similarity=0.284 Sum_probs=208.0
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHh---hhccccceEEEEeeccccccccHH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNK---ISRHFEGSYFACNVRAAEETGRLD 256 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 256 (1866)
.+|..+..||||+.++++|.++|.....++++|+|+||||+||||||+++|++ ...+|...+||...... ......
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ-DKSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC-CHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc-CchHHH
Confidence 35566778999999999999999876677999999999999999999999986 45667766644443331 122233
Q ss_pred HHHHHHHHHHhccccccCccchh----HHHHHHHhhcC--cEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 257 DLRKELLSKLLNDRNVKNFQNIS----VNFQSKRLARK--KVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~----~~~l~~~L~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
..+..++..+............. .+.++..+.++ |+||||||||+..+|+.+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44555666655433211111111 24555556655 999999999998876654 679999999999999
Q ss_pred hcc-CccceeeecCC-CCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHHHh
Q 000202 331 LTN-CEVDHIYQMKE-LVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMRKL 408 (1866)
Q Consensus 331 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~~l 408 (1866)
+.. .+....+++++ |+.+||++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.++ .+|+.+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45667899996 99999999999988432 234456799999999999999999999998776 5799999888
Q ss_pred ccCCC-----------chhhhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchh
Q 000202 409 EIVPH-----------MEIQEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDE 464 (1866)
Q Consensus 409 ~~~~~-----------~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e 464 (1866)
..... ..+..+|.+||+.|++++|.||.+|+ +||+++.++...++++|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~-----~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGG-----GSCTTCCEEHHHHHHHHTCC
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhC-----ccCCCCeeCHHHHHHHhCCC
Confidence 65431 34889999999999999999999999 99999999999999999854
No 10
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.93 E-value=2.4e-27 Score=250.49 Aligned_cols=120 Identities=20% Similarity=0.363 Sum_probs=112.0
Q ss_pred CCCCCCccEEEccccccccCchHHHHHHHHhhCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHH
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLD 88 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~ 88 (1866)
.++.++|||||||+++| +++|+.||+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 57899999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEEEEEecCCcccccccchhhhHHHH
Q 000202 89 ELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFGDSFFML 130 (1866)
Q Consensus 89 El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~ 130 (1866)
||..|+++...++++|+||||+|+|++||+|.|.|+++|+.+
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 999999988778889999999999999999999999988654
No 11
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=5.8e-26 Score=300.06 Aligned_cols=266 Identities=21% Similarity=0.269 Sum_probs=196.8
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh---hcccc-ceEEEEeeccccccccH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI---SRHFE-GSYFACNVRAAEETGRL 255 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 255 (1866)
..|..+..||||+.++++|.++|...+.+.++|+|+||||+||||||.+++++. ...|+ +++|+..... + ....
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-D-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-C-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-c-hHHH
Confidence 345667789999999999999998655678999999999999999999999854 77896 5666654332 1 1111
Q ss_pred HHHHHHHHHHHhccccc--cCccc--hhHHHHHHHhhc--CcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 256 DDLRKELLSKLLNDRNV--KNFQN--ISVNFQSKRLAR--KKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 256 ~~l~~~ll~~~~~~~~~--~~~~~--~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
...+..+...+...... ..... .....++..+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 22222233333321110 11111 112455666665 7999999999998776543 67899999999998
Q ss_pred hhccCccceeeec---CCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecccccCCCHHHHHHHHH
Q 000202 330 VLTNCEVDHIYQM---KELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGCYLCGRSKEEWESAMR 406 (1866)
Q Consensus 330 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~~L~~~~~~~w~~~l~ 406 (1866)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.|+.+. .+|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 334554 5899999999999988642 223346789999999999999999999998764 36988888
Q ss_pred HhccCC-----------CchhhhhhhcccCCCChhhHHHHHHHHHHhHHhhcccCCCCCCCeeeecchh
Q 000202 407 KLEIVP-----------HMEIQEVLKISYDSLDDSQKRMHDLLRAMGREIVRKESIVDPGKRSRLWHDE 464 (1866)
Q Consensus 407 ~l~~~~-----------~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~~~i~~~~~~~~~~~~~rlW~~e 464 (1866)
.+.... ...+..+|..||+.|++++|.|+.+++ +||++..++...+.++|..+
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la-----~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS-----ILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGG-----GCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcc-----ccCCCCccCHHHHHHHhccC
Confidence 886432 236889999999999999999999999 99988877777788889755
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4e-21 Score=255.38 Aligned_cols=412 Identities=15% Similarity=0.094 Sum_probs=202.7
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++. +..+++|++|++++| .+..+++..|+++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 456666666666665542 456666666666665 45555554456666666666666666655 55666666666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCC--cCChhhcCCCccceeccccccccC----------CC----ccccCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIK--MLPKEIGKLTSLRYLTVFFFGSMY----------KS----EYIKLPP 1515 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~~~----------~~----~~~~l~~ 1515 (1866)
|++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|+++++.-.. .+ ....+..
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 6666655444456666666666666666665 356666666666666665421100 00 0111222
Q ss_pred CCCC---hhhhhccccCcEeecccCCCCC---------------------------c-----------------------
Q 000202 1516 DLIS---SDILSRLQALETLSIDVHPGDK---------------------------R----------------------- 1542 (1866)
Q Consensus 1516 ~~~~---~~~l~~L~~L~~L~l~~~~~~~---------------------------~----------------------- 1542 (1866)
+.+. ...+.. .+|+.|+++.+.... .
T Consensus 191 n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 2111 111111 134444444322100 0
Q ss_pred cccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc-----------cccc
Q 000202 1543 WDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD-----------YVQC 1611 (1866)
Q Consensus 1543 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----------~~~~ 1611 (1866)
..+........+..+++|+.|+++.+.+..++ ......+|+.|.+..+ ....++.+-.. ....
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-----~l~~~~~L~~L~l~~n-~l~~lp~~~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-----DVPKHFKWQSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-----CCCTTCCCSEEEEESC-CCSSCCCCCCSSCCEEEEESCSSCEE
T ss_pred ccccccccccccccCCCCCEEEecCccchhhh-----hccccccCCEEEcccc-cCcccccCCCCccceeeccCCcCccc
Confidence 00111111222455566666666665554433 1112334444444321 11222211000 0000
Q ss_pred cccCccceeEeecCC-----CCC--hHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCc
Q 000202 1612 DYNQHDRCLRFVNGK-----NVP--PEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEH 1684 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~-----~~p--~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~ 1684 (1866)
........++.+... ..+ +..+..+..+..+.+..+ .+..++ ..+..+++|+.|++++|. +..+... .
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~--~ 418 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFMGLEELQHLDFQHST-LKRVTEF--S 418 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCTTCTTCCEEECTTSE-EESTTTT--T
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch-hhccCCCCCCeeECCCCc-cCCccCh--h
Confidence 000011112211111 110 112222222333333322 244444 345666777777777643 2222110 1
Q ss_pred ccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhccccceeeeccccccceecccC
Q 000202 1685 TTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1685 ~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
....+++|+.|+++++.-... . ....+.+++|+.|++++| +++. .++ ..+.++++|++|++++| .++.++.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~-~--~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-- 490 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKID-F--DGIFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKC-QLEQISW-- 490 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEEC-C--TTTTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT--
T ss_pred hhhccccCCEEECcCCCCCcc-c--hhhhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCC-cCCccCh--
Confidence 234567777777776542111 1 111235678888888887 4443 222 34667788888888887 4555432
Q ss_pred ccccccccCCCCcCEEeccCCcccccc-c--cCCCCCccEEEEEcCccccccC
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLPELANI-W--RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~~L~~i-~--~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..+..+++|+.|+|++|+ +..+ + ...+++|+.|++++|. ++.+|
T Consensus 491 ----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 491 ----GVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp ----TTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred ----hhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence 224578899999999885 4444 2 2468899999999885 66665
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=7.8e-21 Score=255.21 Aligned_cols=357 Identities=14% Similarity=0.158 Sum_probs=231.9
Q ss_pred CCCccccccCcEEEccCCCCCC------------------CCC-CC--CCCcccEEEccCCcCCcccChhHHhcCCCCcE
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQT------------------LPG-RP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKV 1426 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~------------------l~~-~~--~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~ 1426 (1866)
|+.+..+++|+.|++++|.+.. +|. +. .+++|+.|+|++|.....+|..+ +++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCE
Confidence 3447788999999999999998 885 44 79999999999998788888665 88999999
Q ss_pred EEccCCC-CCC--CChhhcCCC-------CCcEEecccccCcccCCc--cccCCCCCcEEEccCCCCCcCChhhcCCCcc
Q 000202 1427 LNLSKTR-IKS--LPETLVNLK-------CLQILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIKMLPKEIGKLTSL 1494 (1866)
Q Consensus 1427 L~Ls~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L 1494 (1866)
|+|++|. ++. +|..++++. +|++|+|++|.+. .+|. .++++++|++|++++|.++.+| .++++++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence 9999998 874 898888776 9999999999976 8998 8999999999999999999999 89999999
Q ss_pred ceeccccccccCCCccccCCCCCCChhhhhcccc-CcEeecccCCCCCccccccccccccccCCC--CCCEEEeecCCcc
Q 000202 1495 RYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA-LETLSIDVHPGDKRWDKDVKIVITEVSGLT--KLSSLSFHFPEIE 1571 (1866)
Q Consensus 1495 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~ 1571 (1866)
++|+++++.- ..+|. .+..+++ |+.|+++.+... .++..+..++ +|+.|+++.|.+.
T Consensus 598 ~~L~Ls~N~l------~~lp~------~l~~l~~~L~~L~Ls~N~L~--------~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 598 TDLKLDYNQI------EEIPE------DFCAFTDQVEGLGFSHNKLK--------YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp SEEECCSSCC------SCCCT------TSCEECTTCCEEECCSSCCC--------SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred eEEECcCCcc------ccchH------HHhhccccCCEEECcCCCCC--------cCchhhhccccCCCCEEECcCCcCC
Confidence 9999976431 13333 2678888 999999865422 3455555554 4999999998875
Q ss_pred chHHhhccCc--cccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccC
Q 000202 1572 CVAEFLKGSA--WNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLS 1649 (1866)
Q Consensus 1572 ~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~ 1649 (1866)
.....+.... ....+|+.|. +....+..+|...
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~----------------------------Ls~N~L~~lp~~~----------------- 692 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVT----------------------------LSYNEIQKFPTEL----------------- 692 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEE----------------------------CCSSCCCSCCHHH-----------------
T ss_pred CccccchhhhccccCCCcCEEE----------------------------ccCCcCCccCHHH-----------------
Confidence 4211100000 0111222221 2222233455443
Q ss_pred ceecCCCCcccccCCcEEEecccCCccEeccCCCcc----cccccccccccccccccccccccccccccccccccEEeEe
Q 000202 1650 IVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHT----TAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIH 1725 (1866)
Q Consensus 1650 l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~----~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~ 1725 (1866)
+..+++|+.|++++| .+..++...... ...+++|+.|+++++ +++.+.. .+....+++|+.|+++
T Consensus 693 --------~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~-~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 693 --------FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD-DFRATTLPYLSNMDVS 761 (876)
T ss_dssp --------HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG-GGSTTTCTTCCEEECC
T ss_pred --------HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH-HhhhccCCCcCEEEeC
Confidence 234567777777764 444444321100 112336777777664 3332111 1111146777777777
Q ss_pred cCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEc
Q 000202 1726 ACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYG 1805 (1866)
Q Consensus 1726 ~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~ 1805 (1866)
+| +++.+|. .+.++++|+.|+|++|+.+..-...+. ....+..+++|+.|+|++|. +..++...+++|+.|++++
T Consensus 762 ~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~ 836 (876)
T 4ecn_A 762 YN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIAD 836 (876)
T ss_dssp SS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCS
T ss_pred CC-CCCccch--hhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCC
Confidence 77 5555533 455677777777776431110000000 01224467777777777775 3666655567777777777
Q ss_pred Ccc
Q 000202 1806 CPK 1808 (1866)
Q Consensus 1806 Cp~ 1808 (1866)
||-
T Consensus 837 N~l 839 (876)
T 4ecn_A 837 NPN 839 (876)
T ss_dssp CTT
T ss_pred CCC
Confidence 764
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2.5e-21 Score=256.85 Aligned_cols=138 Identities=11% Similarity=0.043 Sum_probs=87.2
Q ss_pred cccccCCcEEEecccCCccEeccCCCcc----cccccccccccccccccccccccccccccccccccEEeEecCccCccc
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHT----TAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYV 1733 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~----~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l 1733 (1866)
+..+++|++|++++| .+..++...... ...+++|+.|+++++. ++.+.. .+....+++|+.|++++| +++.+
T Consensus 453 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N-~l~~i 528 (636)
T 4eco_A 453 FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD-DFRATTLPYLVGIDLSYN-SFSKF 528 (636)
T ss_dssp HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG-GGSTTTCTTCCEEECCSS-CCSSC
T ss_pred HccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccCh-hhhhccCCCcCEEECCCC-CCCCc
Confidence 345788888888885 455554432100 0112388888887652 332211 111125788999999888 66665
Q ss_pred cchhhhhhccccceeeeccccc------cceecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEcCc
Q 000202 1734 FTCSMIQFLAKLEELTVEYCLA------VKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1734 ~~~~~l~~L~sLe~L~I~~C~~------L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp 1807 (1866)
|. .+.++++|++|++++|.. ...++ ..+..+++|+.|+|++|. +..++...+++|+.|++++||
T Consensus 529 p~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-------~~l~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 529 PT--QPLNSSTLKGFGIRNQRDAQGNRTLREWP-------EGITLCPSLTQLQIGSND-IRKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CC--GGGGCSSCCEEECCSCBCTTCCBCCCCCC-------TTGGGCSSCCEEECCSSC-CCBCCSCCCTTCCEEECCSCT
T ss_pred Ch--hhhcCCCCCEEECCCCcccccCcccccCh-------HHHhcCCCCCEEECCCCc-CCccCHhHhCcCCEEECcCCC
Confidence 43 456788999999976542 22222 234578889999998887 477766666889999999886
Q ss_pred cc
Q 000202 1808 KL 1809 (1866)
Q Consensus 1808 ~L 1809 (1866)
-.
T Consensus 599 l~ 600 (636)
T 4eco_A 599 NI 600 (636)
T ss_dssp TC
T ss_pred Cc
Confidence 44
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.1e-20 Score=250.98 Aligned_cols=407 Identities=18% Similarity=0.135 Sum_probs=246.9
Q ss_pred CCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCC
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLK 1445 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~ 1445 (1866)
..+..+++|++|++++|.+..++ .+..+++|++|+|++| .+..+++..++.+++|++|+|++|.++.+ |..+++++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 34667888888888888887653 3678888888888877 45555555567888888888888888876 56788888
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccc--eeccccccccC----------------
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLR--YLTVFFFGSMY---------------- 1506 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~--~L~l~~~~~~~---------------- 1506 (1866)
+|++|+|++|.+.+.-+..+..+++|++|++++|.++.+ |..++.+++|+ .|++.++.-..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 888888888886653323444488888888888888866 45577888887 55554421000
Q ss_pred ---------------------------------------------CCccccCCCCC---CChhhhhccccCcEeecccCC
Q 000202 1507 ---------------------------------------------KSEYIKLPPDL---ISSDILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1507 ---------------------------------------------~~~~~~l~~~~---~~~~~l~~L~~L~~L~l~~~~ 1538 (1866)
.+..+.+..+. ++...+..+++|+.|+++.+.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 00011111111 122335667777777777432
Q ss_pred CCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccc
Q 000202 1539 GDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDR 1618 (1866)
Q Consensus 1539 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1618 (1866)
...++..+..+++|+.|+++.|.+..+.. ......++|+.|.+....-...++.. ..........+
T Consensus 290 --------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L 355 (606)
T 3t6q_A 290 --------LSELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLSIKGNTKRLELGTG---CLENLENLREL 355 (606)
T ss_dssp --------CSCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCTTCCEE
T ss_pred --------cCCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEECCCCCcccccchh---hhhccCcCCEE
Confidence 23456677888888888888888765532 11223456666665422111011110 00001111112
Q ss_pred eeEeecCCCCC--hHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCccccccccccccc
Q 000202 1619 CLRFVNGKNVP--PEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLT 1696 (1866)
Q Consensus 1619 ~L~~~~~~~~p--~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~ 1696 (1866)
.+........+ +..+..+..+..+.+..+ .+..+....++.+++|+.|++++|. +...... .....+++|+.|+
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQ--SPFQNLHLLKVLN 431 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCC-EECCTTC--CTTTTCTTCCEEE
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCc-CCCcccc--hhhhCcccCCEEE
Confidence 22222222111 111222333444444433 4555555567889999999999864 3332211 1245688999999
Q ss_pred ccccccccccccccccccccccccEEeEecCccCccc--cchhhhhhccccceeeeccccccceecccCccccccccCCC
Q 000202 1697 LNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYV--FTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLP 1774 (1866)
Q Consensus 1697 l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l--~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp 1774 (1866)
++++.- .... ....+.+++|+.|++++|+ ++.. +....+..+++|++|++++| .++.++.. .+..++
T Consensus 432 l~~n~l-~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~ 500 (606)
T 3t6q_A 432 LSHSLL-DISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH------AFTSLK 500 (606)
T ss_dssp CTTCCC-BTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT------TTTTCT
T ss_pred CCCCcc-CCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChh------hhcccc
Confidence 987632 2111 1112458999999999994 4431 22245788999999999998 56555422 255789
Q ss_pred CcCEEeccCCccccccc---cCCCCCccEEEEEcCc
Q 000202 1775 SLKKLRLHHLPELANIW---RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1775 ~L~~L~L~~c~~L~~i~---~~~lpsLe~L~I~~Cp 1807 (1866)
+|+.|+|+++. +..+. ...+++| +|++++|.
T Consensus 501 ~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 501 MMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCEEECCCCc-cCcCChhHhCccccc-EEECcCCc
Confidence 99999999985 44442 2367888 89998873
No 16
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.85 E-value=1.4e-22 Score=209.70 Aligned_cols=134 Identities=17% Similarity=0.224 Sum_probs=92.0
Q ss_pred CCCCCCccEEEccccccccCchHHHHHHHHhh--CCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhh
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSHLYSALCQ--NNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWC 86 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c 86 (1866)
....+.|||||||+++|+ .||.||+++|++ .|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 345689999999999995 589999999998 599999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEEEEecCCcccccccchh-hhHHHHhhcc---hhhhhhHHHHH
Q 000202 87 LDELLKILECKRNYGQIVIPVFYRVDPSHVRKQIGSFG-DSFFMLEERF---PYKMRNWRSAL 145 (1866)
Q Consensus 87 ~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~-~~~~~~~~~~---~~~~~~wr~al 145 (1866)
..|+..|+.+......+||||||+|+++++......+- --+..++..| .+.|.+|++|+
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999987333447889999999766543322110 0011223333 35577787654
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=9.2e-21 Score=248.70 Aligned_cols=126 Identities=24% Similarity=0.285 Sum_probs=74.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++| .+..+++..|+.+++|++|+|++|.+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45666666666665443 3456666666666655 44455544445666666666666666655543 66666666666
Q ss_pred cccccCcc-cCCccccCCCCCcEEEccCCC-CCcCC-hhhcCCCccceecccc
Q 000202 1452 LRDCDFLF-VLPPEVGSLECLEVLDLRGTE-IKMLP-KEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~-i~~lp-~~i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+ ..|..++++++|++|++++|. +..+| ..++++++|++|++.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 66666443 345556666666666666665 44554 3466666666666654
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3.2e-20 Score=244.84 Aligned_cols=137 Identities=20% Similarity=0.114 Sum_probs=74.6
Q ss_pred cccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchh
Q 000202 1658 VGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCS 1737 (1866)
Q Consensus 1658 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~ 1737 (1866)
+..+++|++|++++|. +..++.. ...+++|+.|++.++.- ..... ......+++|+.|++++| .++..++ .
T Consensus 369 ~~~~~~L~~L~l~~n~-l~~~~~~----~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~ 439 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNG-VITMSSN----FLGLEQLEHLDFQHSNL-KQMSE-FSVFLSLRNLIYLDISHT-HTRVAFN-G 439 (570)
T ss_dssp HHTCSCCCEEECCSCS-EEEEEEE----EETCTTCCEEECTTSEE-ESCTT-SCTTTTCTTCCEEECTTS-CCEECCT-T
T ss_pred ccccCccCEEECCCCc-ccccccc----ccccCCCCEEEccCCcc-ccccc-hhhhhcCCCCCEEeCcCC-cccccch-h
Confidence 4556777777777753 3333321 24467777777766432 11100 011235677777777777 3444333 3
Q ss_pred hhhhccccceeeecccccc-ceecccCccccccccCCCCcCEEeccCCcccccc-c--cCCCCCccEEEEEcCcccccc
Q 000202 1738 MIQFLAKLEELTVEYCLAV-KSIILDGEITYSSCIMLPSLKKLRLHHLPELANI-W--RNDWPSLEYISFYGCPKLKKM 1812 (1866)
Q Consensus 1738 ~l~~L~sLe~L~I~~C~~L-~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i-~--~~~lpsLe~L~I~~Cp~L~~l 1812 (1866)
.+.++++|++|++++|.-. ..++ ..+..+++|+.|+|++|. +..+ + ...+++|++|++++| +++.+
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred hhhcCCcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCC
Confidence 4566777777777777422 1232 123456777777777664 3333 1 235667777777766 34443
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=6.8e-20 Score=234.46 Aligned_cols=344 Identities=20% Similarity=0.197 Sum_probs=245.5
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEe
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILI 1451 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~ 1451 (1866)
..+++++.|++.++.+..+|.+..+++|++|++++| .+..+|+ +..+++|++|++++|.+..+|. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 457889999999999999998889999999999988 5677776 5889999999999999998887 99999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
|++|.+. .+|. ++++++|++|++++|.+..+| .++++++|++|++... .. . ...+..+++|+.
T Consensus 119 L~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~-----~-------~~~~~~l~~L~~ 181 (466)
T 1o6v_A 119 LFNNQIT-DIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VT-----D-------LKPLANLTTLER 181 (466)
T ss_dssp CCSSCCC-CCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CC-----C-------CGGGTTCTTCCE
T ss_pred CCCCCCC-CChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--cc-----C-------chhhccCCCCCE
Confidence 9999854 4554 899999999999999999887 4899999999988421 11 1 112678899999
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQC 1611 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 1611 (1866)
|+++.+.... ...+..+++|+.|+++.|.+..... ....++|+.|.+.. ..+..+..
T Consensus 182 L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~-n~l~~~~~-------- 238 (466)
T 1o6v_A 182 LDISSNKVSD---------ISVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNG-NQLKDIGT-------- 238 (466)
T ss_dssp EECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCS-SCCCCCGG--------
T ss_pred EECcCCcCCC---------ChhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCC-CCcccchh--------
Confidence 9998654221 2347788999999999888776543 12245566666531 11111100
Q ss_pred cccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccc
Q 000202 1612 DYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPS 1691 (1866)
Q Consensus 1612 ~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~ 1691 (1866)
..... .+..+.+..+ .+..++. +..+++|+.|++++| .+..+.. ...+++
T Consensus 239 --l~~l~-------------------~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~ 288 (466)
T 1o6v_A 239 --LASLT-------------------NLTDLDLANN-QISNLAP--LSGLTKLTELKLGAN-QISNISP-----LAGLTA 288 (466)
T ss_dssp --GGGCT-------------------TCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSS-CCCCCGG-----GTTCTT
T ss_pred --hhcCC-------------------CCCEEECCCC-ccccchh--hhcCCCCCEEECCCC-ccCcccc-----ccCCCc
Confidence 00001 1112222211 1222222 567889999999886 4444432 346889
Q ss_pred cccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccccccc
Q 000202 1692 LENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCI 1771 (1866)
Q Consensus 1692 L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~ 1771 (1866)
|+.|+++++. ++. ..+.+.+++|+.|++++| +++..++ +..+++|++|++++| .+..++ .+.
T Consensus 289 L~~L~L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~l~ 350 (466)
T 1o6v_A 289 LTNLELNENQ-LED----ISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS--------SLA 350 (466)
T ss_dssp CSEEECCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG--------GGT
T ss_pred cCeEEcCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch--------hhc
Confidence 9999998753 332 223457899999999999 6777654 567899999999998 455442 245
Q ss_pred CCCCcCEEeccCCccccccccCCCCCccEEEEEcCc
Q 000202 1772 MLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1772 ~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp 1807 (1866)
.+++|+.|++++|+--...+...+++|+.|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 789999999999874333345688999999999885
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=252.61 Aligned_cols=137 Identities=25% Similarity=0.301 Sum_probs=118.7
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-Chh
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~ 1440 (1866)
.++..|. ..++++.|++++|.+..++ .+..+++|++|+|++|.....+++..|+++++|++|+|++|.+..+ |..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 3444454 4578999999999998764 5789999999999999888888777779999999999999999966 789
Q ss_pred hcCCCCCcEEecccccCcccCCcc--ccCCCCCcEEEccCCCCCcC--ChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPE--VGSLECLEVLDLRGTEIKML--PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~--i~~L~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~ 1502 (1866)
++++++|++|+|++|.+.+..|.. +++|++|++|++++|.++.+ +..++++++|++|+++++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 999999999999999988777766 99999999999999999876 357999999999999763
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.1e-20 Score=253.79 Aligned_cols=339 Identities=17% Similarity=0.158 Sum_probs=218.2
Q ss_pred CcccChhHHhcCCCCcEEEccCCCCCC------------------CChhhc--CCCCCcEEecccccCcccCCccccCCC
Q 000202 1410 LRVIPPSFFELMTSLKVLNLSKTRIKS------------------LPETLV--NLKCLQILILRDCDFLFVLPPEVGSLE 1469 (1866)
Q Consensus 1410 l~~~p~~~~~~l~~L~~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lP~~i~~L~ 1469 (1866)
+..+|..+ +++++|++|+|++|.++. +|..++ +|++|++|+|++|.+.+.+|..+++|+
T Consensus 437 L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 34477765 778999999999998887 888887 899999999999988888998899999
Q ss_pred CCcEEEccCCC-CCc--CChhhcCCC-------ccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1470 CLEVLDLRGTE-IKM--LPKEIGKLT-------SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1470 ~L~~L~l~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
+|++|++++|. ++. +|..+++++ +|++|+++++.- ..+|. ...+.++++|+.|+++.+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L------~~ip~----~~~l~~L~~L~~L~Ls~N~- 584 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL------EEFPA----SASLQKMVKLGLLDCVHNK- 584 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC------CBCCC----HHHHTTCTTCCEEECTTSC-
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC------CccCC----hhhhhcCCCCCEEECCCCC-
Confidence 99999999997 774 888777766 888888865421 12221 1247788888888888543
Q ss_pred CCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCC-cceeEEEEecccccccccccccccccccCccc
Q 000202 1540 DKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQ-LTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDR 1618 (1866)
Q Consensus 1540 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1618 (1866)
...++ .+..+++|+.|+++.|.+..++.. .....+ |+.|.+.. ..+..++.+.. . ....
T Consensus 585 -------l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~----l~~l~~~L~~L~Ls~-N~L~~lp~~~~----~---~~~~ 644 (876)
T 4ecn_A 585 -------VRHLE-AFGTNVKLTDLKLDYNQIEEIPED----FCAFTDQVEGLGFSH-NKLKYIPNIFN----A---KSVY 644 (876)
T ss_dssp -------CCBCC-CCCTTSEESEEECCSSCCSCCCTT----SCEECTTCCEEECCS-SCCCSCCSCCC----T---TCSS
T ss_pred -------cccch-hhcCCCcceEEECcCCccccchHH----HhhccccCCEEECcC-CCCCcCchhhh----c---cccC
Confidence 22344 778888889999988887754432 223344 66666542 22222222110 0 0011
Q ss_pred eeEeecCCCCChHHHHHHHhhcceecccccCceecC-CCCcccccCCcEEEecccCCccEeccCCCcccccccccccccc
Q 000202 1619 CLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLS-DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTL 1697 (1866)
Q Consensus 1619 ~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~-~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l 1697 (1866)
.|+.+......- .. .+..++ ....-.+++|+.|++++| .+..++.. ....+++|+.|++
T Consensus 645 ~L~~L~Ls~N~l--------------~g--~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~---~~~~l~~L~~L~L 704 (876)
T 4ecn_A 645 VMGSVDFSYNKI--------------GS--EGRNISCSMDDYKGINASTVTLSYN-EIQKFPTE---LFATGSPISTIIL 704 (876)
T ss_dssp CEEEEECCSSCT--------------TT--TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHH---HHHTTCCCSEEEC
T ss_pred CCCEEECcCCcC--------------CC--ccccchhhhccccCCCcCEEEccCC-cCCccCHH---HHccCCCCCEEEC
Confidence 122222211100 00 000111 001123468999999985 45555432 2235789999999
Q ss_pred ccccccccccccccc-----ccccccccEEeEecCccCccccchhhhh--hccccceeeeccccccceecccCccccccc
Q 000202 1698 NHLWDLTCIWQGILP-----EGSFAELRILSIHACRHLEYVFTCSMIQ--FLAKLEELTVEYCLAVKSIILDGEITYSSC 1770 (1866)
Q Consensus 1698 ~~~~~L~~~~~~~~~-----~~~~p~L~~L~I~~C~~L~~l~~~~~l~--~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~ 1770 (1866)
+++ .++.+....+. ...+++|+.|++++| +|+.++. .+. .+++|+.|+|++| .+..++ ..+
T Consensus 705 s~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~--~l~~~~l~~L~~L~Ls~N-~L~~lp-------~~l 772 (876)
T 4ecn_A 705 SNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSD--DFRATTLPYLSNMDVSYN-CFSSFP-------TQP 772 (876)
T ss_dssp CSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCG--GGSTTTCTTCCEEECCSS-CCSSCC-------CGG
T ss_pred CCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchH--HhhhccCCCcCEEEeCCC-CCCccc-------hhh
Confidence 875 33322211111 112349999999999 7887754 343 8999999999998 455553 224
Q ss_pred cCCCCcCEEeccCCcc------cccccc--CCCCCccEEEEEcCccccccC
Q 000202 1771 IMLPSLKKLRLHHLPE------LANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1771 ~~lp~L~~L~L~~c~~------L~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..+++|+.|+|++++. ...++. ..+++|+.|++++|.- ..+|
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 5889999999987542 223322 3689999999999965 7776
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=8.5e-20 Score=246.02 Aligned_cols=130 Identities=24% Similarity=0.196 Sum_probs=91.1
Q ss_pred ccccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
+..+++|+.|++++|.+..++. +..+++|++|+|++| .+..+|+..|+.+++|++|+|++|.+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 5667777777777777766542 356777777777766 566677665677777777777777777665 467777777
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-h--cCCCccceecccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-I--GKLTSLRYLTVFF 1501 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i--~~L~~L~~L~l~~ 1501 (1866)
++|+|++|.+.+..|..++++++|++|++++|.++.++.. + ..+++|++|++++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 7777777776666666777777777777777777766543 2 3456777777654
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=3.7e-20 Score=245.98 Aligned_cols=405 Identities=17% Similarity=0.102 Sum_probs=234.4
Q ss_pred CccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKC 1446 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~ 1446 (1866)
.+..+++|+.|++++|.+..++ .+..+++|++|+|++| .+..+++..++++++|++|+|++|.+..+| ..++++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 4566777888888888777664 3567788888888777 455554444577888888888888877666 66778888
Q ss_pred CcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCc---------------------------ccee
Q 000202 1447 LQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTS---------------------------LRYL 1497 (1866)
Q Consensus 1447 L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~---------------------------L~~L 1497 (1866)
|++|+|++|.+.+ .+|..++++++|++|++++|.++.++ ..++.+++ |+.|
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 8888888887654 56777888888888888887777553 33444443 3344
Q ss_pred ccccccc-----------cCCCccccC---------------------------------CCCCCCh--hhhhccccCcE
Q 000202 1498 TVFFFGS-----------MYKSEYIKL---------------------------------PPDLISS--DILSRLQALET 1531 (1866)
Q Consensus 1498 ~l~~~~~-----------~~~~~~~~l---------------------------------~~~~~~~--~~l~~L~~L~~ 1531 (1866)
++.++.. +..+....+ ..+.+.. ..+..+++|+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 3332210 000000000 0000000 01445666777
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccc--------cc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSI--------VS 1603 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------~~ 1603 (1866)
|+++.+... .++ .+..+++|+.|+++.|.+..++.. ..++|+.+.+......... ..
T Consensus 290 L~l~~~~~~--------~l~-~l~~~~~L~~L~l~~n~l~~lp~~------~l~~L~~L~l~~n~~~~~~~~~~l~~L~~ 354 (606)
T 3vq2_A 290 MSLAGVSIK--------YLE-DVPKHFKWQSLSIIRCQLKQFPTL------DLPFLKSLTLTMNKGSISFKKVALPSLSY 354 (606)
T ss_dssp EEEESCCCC--------CCC-CCCTTCCCSEEEEESCCCSSCCCC------CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred EEecCccch--------hhh-hccccccCCEEEcccccCcccccC------CCCccceeeccCCcCccchhhccCCCCCE
Confidence 776643321 122 566677777777777776544411 2344444444322111000 00
Q ss_pred c------c------cccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCC-CCcccccCCcEEEec
Q 000202 1604 W------V------TDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSD-FGVGYMSGLKFCIIS 1670 (1866)
Q Consensus 1604 ~------~------~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~-~~l~~l~~L~~L~l~ 1670 (1866)
. + +...........+.+.......+|. .+..+..+..+.+.++ .+..+.. ..++.+++|+.|+++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC-CCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchh-hccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECc
Confidence 0 0 0000000111111222212222221 1111223334443332 3333333 357789999999999
Q ss_pred ccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeee
Q 000202 1671 ECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTV 1750 (1866)
Q Consensus 1671 ~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I 1750 (1866)
+|. +...... ....+++|+.|+++++.-..... ....+.+++|+.|++++| +++..++ ..+.++++|++|++
T Consensus 433 ~n~-l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 433 YTN-TKIDFDG---IFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNM 504 (606)
T ss_dssp TSC-CEECCTT---TTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEEC
T ss_pred CCC-CCccchh---hhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEEC
Confidence 975 4333222 34568999999998864321111 112346899999999999 7777654 46788999999999
Q ss_pred ccccccceecccCccccccccCCCCcCEEeccCCccccccccC--CCC-CccEEEEEcCcc
Q 000202 1751 EYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWRN--DWP-SLEYISFYGCPK 1808 (1866)
Q Consensus 1751 ~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~--~lp-sLe~L~I~~Cp~ 1808 (1866)
++| .+..++. ..+..+++|+.|+|++|. ++.++.. .+| +|++|+++++|-
T Consensus 505 s~N-~l~~~~~------~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 505 SHN-NLLFLDS------SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CSS-CCSCEEG------GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCC-cCCCcCH------HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 999 4555432 235578999999999986 7777543 566 699999988754
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=2.1e-19 Score=229.88 Aligned_cols=362 Identities=19% Similarity=0.194 Sum_probs=240.7
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++|.....+++..|..+++|++|+|++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999998763 4788999999999998666678777779999999999999999866 78899999999999
Q ss_pred cccccCcccCCcc--ccCCCCCcEEEccCCCCCcC-Chh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcc-
Q 000202 1452 LRDCDFLFVLPPE--VGSLECLEVLDLRGTEIKML-PKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL- 1526 (1866)
Q Consensus 1452 L~~~~~~~~lP~~--i~~L~~L~~L~l~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L- 1526 (1866)
|++|.+.+..|.. ++++++|++|++++|.++.+ |.. ++++++|++|+++++.- ..+.. ..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~-----~~l~~l~ 178 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV------KSICE-----EDLLNFQ 178 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB------SCCCT-----TTSGGGT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc------cccCh-----hhhhccc
Confidence 9999987766665 89999999999999999977 555 89999999999976431 11111 123333
Q ss_pred -ccCcEeecccCCCCCcccccc-ccccccccCCCCCCEEEeecCCccchH-HhhccCccccCCcceeEEEEecccccccc
Q 000202 1527 -QALETLSIDVHPGDKRWDKDV-KIVITEVSGLTKLSSLSFHFPEIECVA-EFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1527 -~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
.+|+.|+++.+.......... ......+..+++|+.|+++.|.+.... ..+... ....+++.+.+.......
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~---- 253 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLILSNSYNMG---- 253 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH-TTTCCEEEEECTTCTTTS----
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc-ccccceeeEeeccccccc----
Confidence 578888887654321100000 001123446688999999999876532 222111 112334443331110000
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcc--cccCCcEEEecccCCccEeccC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVG--YMSGLKFCIISECLKIKTVVDT 1681 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~--~l~~L~~L~l~~c~~l~~i~~~ 1681 (1866)
..+ ....+..+....+. ..++|+.|++++|. +..+...
T Consensus 254 ----------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 293 (455)
T 3v47_A 254 ----------------------SSF-----------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS 293 (455)
T ss_dssp ----------------------CCT-----------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT
T ss_pred ----------------------ccc-----------------chhhhccCcccccccccccCceEEEecCcc-ccccchh
Confidence 000 00000111111111 24689999998854 4444332
Q ss_pred CCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecc
Q 000202 1682 KEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIIL 1761 (1866)
Q Consensus 1682 ~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~ 1761 (1866)
....+++|+.|+++++. ++.+. ......+++|+.|++++| +++.+++ ..+.++++|++|++++| .+..++.
T Consensus 294 ---~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~ 364 (455)
T 3v47_A 294 ---VFSHFTDLEQLTLAQNE-INKID--DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGD 364 (455)
T ss_dssp ---TTTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECT
T ss_pred ---hcccCCCCCEEECCCCc-ccccC--hhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccCh
Confidence 23557889999988753 22211 111235789999999998 6777644 56778999999999998 4555532
Q ss_pred cCccccccccCCCCcCEEeccCCcccccccc---CCCCCccEEEEEcCcc
Q 000202 1762 DGEITYSSCIMLPSLKKLRLHHLPELANIWR---NDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1762 ~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~---~~lpsLe~L~I~~Cp~ 1808 (1866)
..+..+++|+.|+|+++. ++.+.. ..+++|++|++++||-
T Consensus 365 ------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 365 ------QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ------TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ------hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 235578999999999874 666644 3678999999988753
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.1e-19 Score=220.83 Aligned_cols=178 Identities=21% Similarity=0.277 Sum_probs=134.5
Q ss_pred CCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCC
Q 000202 1367 EPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKC 1446 (1866)
Q Consensus 1367 ~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~ 1446 (1866)
.......+++++.+++.++.+..++.+..+++|++|++++| .+..+++ +..+++|++|++++|.+..+| .+..+++
T Consensus 36 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 36 DVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp SEECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred CcccchhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 33445678899999999999998888888999999999887 5667766 578899999999999988876 5889999
Q ss_pred CcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1447 LQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1447 L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
|++|++++|.+. .+|. +.++++|++|++++|.....+..+..+++|++|++..+.-. .+ ..+..+
T Consensus 112 L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~------~~-------~~~~~l 176 (347)
T 4fmz_A 112 LRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK------DV-------TPIANL 176 (347)
T ss_dssp CSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC------CC-------GGGGGC
T ss_pred CCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC------Cc-------hhhccC
Confidence 999999998854 4554 88899999999999855544455888999999988654311 11 116678
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
++|+.|+++.+.... + ..+..+++|+.|+++.|.+..
T Consensus 177 ~~L~~L~l~~n~l~~--------~-~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 177 TDLYSLSLNYNQIED--------I-SPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp TTCSEEECTTSCCCC--------C-GGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCEEEccCCcccc--------c-ccccCCCccceeecccCCCCC
Confidence 888888887543221 2 226777888888887776554
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=6.1e-20 Score=240.86 Aligned_cols=404 Identities=16% Similarity=0.160 Sum_probs=233.1
Q ss_pred CCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC--CChhhcCC
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS--LPETLVNL 1444 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~--lp~~i~~L 1444 (1866)
..+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+++..++.+++|++|+|++|.+.. .|..++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 35678899999999999999776 3789999999999988 6778888877999999999999999984 46789999
Q ss_pred CCCcEEecccccCcccCC-ccccCCCCCcEEEccCCCCCc-CChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1445 KCLQILILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKM-LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
++|++|++++|...+.+| ..++++++|++|++++|.++. .|..++++++|++|++...... .++...
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----------~~~~~~ 191 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-----------FLLEIF 191 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-----------THHHHH
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-----------ccchhh
Confidence 999999999998777776 589999999999999999985 6888999999999998653210 111222
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH-HhhccCccccCCcceeEEEEe------
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA-EFLKGSAWNNQQLTEFKFVVG------ 1595 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~~~~L~~l~l~~~------ 1595 (1866)
+..+++|+.|+++.+.....- .........+++|+.|+++.+.+.... ..+........+|+.+.+..+
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 192 ADILSSVRYLELRDTNLARFQ----FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHSTTTBSEEEEESCBCTTCC----CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred HhhcccccEEEccCCcccccc----ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 455778888888754322100 000111234556666666666544321 111111112223333333211
Q ss_pred -----------------------ccccccccc--ccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCc
Q 000202 1596 -----------------------HDVKSIVSW--VTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSI 1650 (1866)
Q Consensus 1596 -----------------------~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l 1650 (1866)
..+.....+ +..............+....+..+|...+..+..+..+.+.++.-.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 000000000 0000000112223334444455566655444444444444433211
Q ss_pred eecC--CCCcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCc
Q 000202 1651 VSLS--DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACR 1728 (1866)
Q Consensus 1651 ~~L~--~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~ 1728 (1866)
...+ ...++.+++|+.|++++| .++.+.... .....+++|+.|+++++ +++.+. ...+.+++|+.|++++|
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~lp---~~~~~~~~L~~L~Ls~N- 420 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG-EILLTLKNLTSLDISRN-TFHPMP---DSCQWPEKMRFLNLSST- 420 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH-HHGGGCTTCCEEECTTC-CCCCCC---SCCCCCTTCCEEECTTS-
T ss_pred cccccchhhhhccccCcEEEccCC-cccccccch-hhhhcCCCCCEEECCCC-CCccCC---hhhcccccccEEECCCC-
Confidence 1111 112355666777776664 333332100 01234566666666654 222211 11124556666666666
Q ss_pred cCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccccc-CCCCCccEEEEEcCc
Q 000202 1729 HLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIWR-NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1729 ~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~-~~lpsLe~L~I~~Cp 1807 (1866)
+++.++.+ ..++|++|++++| .++.++ ..+++|+.|+|+++ +++.++. ..+++|++|++++|
T Consensus 421 ~l~~l~~~----~~~~L~~L~Ls~N-~l~~~~----------~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N- 483 (549)
T 2z81_A 421 GIRVVKTC----IPQTLEVLDVSNN-NLDSFS----------LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN- 483 (549)
T ss_dssp CCSCCCTT----SCTTCSEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-
T ss_pred Ccccccch----hcCCceEEECCCC-Chhhhc----------ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-
Confidence 34444321 0245566666555 233221 25677777777776 3555543 25677777777776
Q ss_pred ccccc
Q 000202 1808 KLKKM 1812 (1866)
Q Consensus 1808 ~L~~l 1812 (1866)
+|+.+
T Consensus 484 ~l~~~ 488 (549)
T 2z81_A 484 QLKSV 488 (549)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 44433
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=234.42 Aligned_cols=408 Identities=18% Similarity=0.147 Sum_probs=246.9
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 68889999999988776 3678889999999988 56666555668899999999999999988877 8899999999
Q ss_pred ccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcc--ceecccccccc-CCCc---cc---------cCCCC
Q 000202 1453 RDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL--RYLTVFFFGSM-YKSE---YI---------KLPPD 1516 (1866)
Q Consensus 1453 ~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~~~-~~~~---~~---------~l~~~ 1516 (1866)
++|.+.+ .+|..++++++|++|++++|.++. ..++.+++| ++|++.++.-. .... .. .++.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 9998766 578889999999999999998875 356777777 88888764320 0000 00 01111
Q ss_pred ----CCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH--HhhccCccccCCccee
Q 000202 1517 ----LISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA--EFLKGSAWNNQQLTEF 1590 (1866)
Q Consensus 1517 ----~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~L~~l 1590 (1866)
.+....+..+++|+.|+++.+.....+.. .......+..+++|+.|+++.+.+.... ..... ....+|+.|
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~--~~~~~L~~L 252 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSY-FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYF 252 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH-HHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH--HHTSSCSEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccce-eecchhhhccccchhhccccccccCHHHHHHHHHH--hhhCcccEE
Confidence 11222345677788888775432111111 1122346778888898888877655321 11111 012467777
Q ss_pred EEEEecccccccccccccc-cccccCccceeEeecCCCCChHHHHHH-Hh--hcceecccccCceecCCCCcccccCCcE
Q 000202 1591 KFVVGHDVKSIVSWVTDYV-QCDYNQHDRCLRFVNGKNVPPEVIQIL-IH--STAFYVDHHLSIVSLSDFGVGYMSGLKF 1666 (1866)
Q Consensus 1591 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~p~~~~~~l-~~--~~~l~~~~~~~l~~L~~~~l~~l~~L~~ 1666 (1866)
.+....-...++.++.... ..........+..... .+|...+..+ .. +..+.+.++. +...+ ..+.+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc-ccccc--chhhCCcccE
Confidence 7764321112333221000 0011112233333334 5663333333 21 3344333322 22221 1267889999
Q ss_pred EEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhcccc
Q 000202 1667 CIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLAKL 1745 (1866)
Q Consensus 1667 L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~sL 1745 (1866)
|++++|.--..++. ....+++|+.|+++++. ++.+.......+.+++|+.|++++| +++. ++. ..+..+++|
T Consensus 329 L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~-~~~~~l~~L 401 (520)
T 2z7x_B 329 LDFSNNLLTDTVFE----NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKK-GDCSWTKSL 401 (520)
T ss_dssp EECCSSCCCTTTTT----TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGG-CSCCCCTTC
T ss_pred EEeECCccChhhhh----hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCC-cCCccccc-chhccCccC
Confidence 99998643222222 23568889999988753 2211000111346789999999988 5555 533 345668889
Q ss_pred ceeeeccccccceecccCccccccccCC-CCcCEEeccCCccccccccC--CCCCccEEEEEcCccccccC
Q 000202 1746 EELTVEYCLAVKSIILDGEITYSSCIML-PSLKKLRLHHLPELANIWRN--DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1746 e~L~I~~C~~L~~l~~~~~~~~~~~~~l-p~L~~L~L~~c~~L~~i~~~--~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
++|++++|.--..++ ..+ ++|+.|+|++|. +..++.. .+++|++|++++| +++.+|
T Consensus 402 ~~L~Ls~N~l~~~~~----------~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 402 LSLNMSSNILTDTIF----------RCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CEEECCSSCCCGGGG----------GSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred CEEECcCCCCCcchh----------hhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 999998884222221 122 688999998874 6666432 6888999999888 566665
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=3.1e-19 Score=226.21 Aligned_cols=304 Identities=17% Similarity=0.133 Sum_probs=208.6
Q ss_pred CCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCC
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCL 1447 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L 1447 (1866)
+..+..+++++.|++++|.+..+|.+..+++|+.|++++| .+..+| ++.+++|++|+|++|.++.+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 3456778999999999999999998889999999999988 566676 478999999999999999886 8999999
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
++|+|++|.+.+ +| ++++++|++|++++|.++.+| ++++++|++|++..+...... .+..++
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-------------~~~~l~ 170 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-------------DVTPQT 170 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-------------CCTTCT
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-------------ccccCC
Confidence 999999998654 65 899999999999999999886 889999999999765432211 256788
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+... .++ +..+++|+.|+++.|.+..++ ....++|+.|.+.
T Consensus 171 ~L~~L~ls~n~l~--------~l~--l~~l~~L~~L~l~~N~l~~~~------l~~l~~L~~L~Ls-------------- 220 (457)
T 3bz5_A 171 QLTTLDCSFNKIT--------ELD--VSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCS-------------- 220 (457)
T ss_dssp TCCEEECCSSCCC--------CCC--CTTCTTCCEEECCSSCCSCCC------CTTCTTCSEEECC--------------
T ss_pred cCCEEECCCCccc--------eec--cccCCCCCEEECcCCcCCeec------cccCCCCCEEECc--------------
Confidence 9999999854322 222 778899999999988876541 1122333333321
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
. ..+..++ ++.+++|+.|+++++ .+..++. .
T Consensus 221 --------------~-------------------------N~l~~ip---~~~l~~L~~L~l~~N-~l~~~~~------~ 251 (457)
T 3bz5_A 221 --------------S-------------------------NKLTEID---VTPLTQLTYFDCSVN-PLTELDV------S 251 (457)
T ss_dssp --------------S-------------------------SCCSCCC---CTTCTTCSEEECCSS-CCSCCCC------T
T ss_pred --------------C-------------------------CcccccC---ccccCCCCEEEeeCC-cCCCcCH------H
Confidence 0 0111111 345667777777664 3433321 2
Q ss_pred ccccc----------ccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccc
Q 000202 1688 VFPSL----------ENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVK 1757 (1866)
Q Consensus 1688 ~f~~L----------~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~ 1757 (1866)
.|++| +.|+++++..+. .++.+.+++|+.|++++|+.+..++. ..++|+.|++++|++|+
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~-----~~~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLV 321 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCC-----EEECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCC-----cccccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCC
Confidence 24444 444444443322 23345678888888888877776642 34566777777777776
Q ss_pred eecccCc-cccccccCCCCcCEEeccCC
Q 000202 1758 SIILDGE-ITYSSCIMLPSLKKLRLHHL 1784 (1866)
Q Consensus 1758 ~l~~~~~-~~~~~~~~lp~L~~L~L~~c 1784 (1866)
.+...+. .....+..+++|+.|+++++
T Consensus 322 ~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 322 YLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred EEECCCCcccccccccCCcCcEEECCCC
Confidence 6643321 11112445677777777654
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.3e-19 Score=238.34 Aligned_cols=409 Identities=15% Similarity=0.067 Sum_probs=238.3
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~ 1451 (1866)
..++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+++++|++|+|++|.+..+ |..++++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36899999999999775 4789999999999988 56667666668999999999999999866 67899999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCccceecccccc----------ccCCCc--cccCCCCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTSLRYLTVFFFG----------SMYKSE--YIKLPPDLI 1518 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~----------~~~~~~--~~~l~~~~~ 1518 (1866)
|++|.+.+..|..++++++|++|++++|.+..++ ..+..+++|++|++.++. .+..+. .+.+..+.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999977666788999999999999999999763 345559999999997632 111111 122222221
Q ss_pred Chhh--hhccccCcEeecccCCCCC-------------------------c-------------------cccccc-ccc
Q 000202 1519 SSDI--LSRLQALETLSIDVHPGDK-------------------------R-------------------WDKDVK-IVI 1551 (1866)
Q Consensus 1519 ~~~~--l~~L~~L~~L~l~~~~~~~-------------------------~-------------------~~~~~~-~~~ 1551 (1866)
.... .....+|+.|+++.+.... . ..+... ...
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 1100 0111223333322211000 0 000111 112
Q ss_pred ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccceeEeecCC-CCCh
Q 000202 1552 TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPP 1630 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~ 1630 (1866)
..+..+++|+.|+++.|.+..++..+ ...++|+.|.+.. ..+..... ...........+.+...... .+|+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l----~~l~~L~~L~l~~-n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGL----VGLSTLKKLVLSA-NKFENLCQ---ISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSC----CSCTTCCEEECTT-CCCSBGGG---GCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred HHhccccCCCEEeccCCccCCCChhh----cccccCCEEECcc-CCcCcCch---hhhhccCcCCEEECCCCCcccccch
Confidence 23566777788888777776554322 2334566555531 11111111 00000011111222211111 2333
Q ss_pred HHHHHHHhhcceecccccCceecC--CCCcccccCCcEEEecccCCccEeccCCCccccccccccccccccccccccccc
Q 000202 1631 EVIQILIHSTAFYVDHHLSIVSLS--DFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQ 1708 (1866)
Q Consensus 1631 ~~~~~l~~~~~l~~~~~~~l~~L~--~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~ 1708 (1866)
..+..+..+..+.+..+ .+..+. ...++.+++|++|++++| .+..+... ....+++|+.|+++++.-.....
T Consensus 344 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~- 417 (606)
T 3t6q_A 344 GCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTE---AFKECPQLELLDLAFTRLKVKDA- 417 (606)
T ss_dssp STTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTT---TTTTCTTCSEEECTTCCEECCTT-
T ss_pred hhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC-cCCcCCHH---HhcCCccCCeEECCCCcCCCccc-
Confidence 22222233333333322 223332 234566777777777774 33333222 23446777777777643211100
Q ss_pred ccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccc
Q 000202 1709 GILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPEL 1787 (1866)
Q Consensus 1709 ~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L 1787 (1866)
......+++|+.|++++| .++..++ ..+.++++|++|++++|.--.. ++. ...+..+++|+.|+|++|. +
T Consensus 418 -~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~l~~L~~L~Ls~n~-l 488 (606)
T 3t6q_A 418 -QSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQK-----TNSLQTLGRLEILVLSFCD-L 488 (606)
T ss_dssp -CCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECS-----SCGGGGCTTCCEEECTTSC-C
T ss_pred -chhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCcccccc-----chhhccCCCccEEECCCCc-c
Confidence 011235788888888888 4555433 4566788888888888842221 111 1234578999999999985 5
Q ss_pred cccc---cCCCCCccEEEEEcCc
Q 000202 1788 ANIW---RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1788 ~~i~---~~~lpsLe~L~I~~Cp 1807 (1866)
..+. ...+++|++|++++|.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC
T ss_pred CccChhhhccccCCCEEECCCCc
Confidence 5542 2468999999999884
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=5.5e-19 Score=238.11 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=113.1
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..+|. +..+++|++|+|++| .+..+++..++++++|++|+|++|.++.+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 689999999999998884 778999999999988 5667777777999999999999999999996 699999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 1502 (1866)
|++|.+.+..|..++++++|++|++++|.++.+ |..++++++|++|+++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 999997766668899999999999999999866 556899999999999764
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=1.8e-19 Score=244.80 Aligned_cols=412 Identities=17% Similarity=0.076 Sum_probs=195.0
Q ss_pred cccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L 1450 (1866)
..+++|+.|++++|.+........+++|+.|++++|.....+|..++..+++|++|+|++|.+. .+|..++++++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 3455555666665555422222255566666666554333555555443466666666666655 555666666666666
Q ss_pred ecccccCcccCCcc-ccCCCCCcEEEccCCCCC-cCChhhcCCC-ccceeccccccc------------cCCCccccCCC
Q 000202 1451 ILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIK-MLPKEIGKLT-SLRYLTVFFFGS------------MYKSEYIKLPP 1515 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~------------~~~~~~~~l~~ 1515 (1866)
+|++|.+.+.+|.. ++++++|++|++++|.+. .+|..+++++ +|++|+++++.- ...++.+.+..
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 66666655555654 566666666666666655 5566666555 566666554221 01111122222
Q ss_pred CCC---ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeE
Q 000202 1516 DLI---SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFK 1591 (1866)
Q Consensus 1516 ~~~---~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~ 1591 (1866)
+.+ ....+..+++|+.|+++.+.. ....+..+..+++|+.|+++.|.+.. ++..+ ...++|+.|.
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~ 472 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYL-------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL----MYVKTLETLI 472 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEE-------ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEE
T ss_pred CccccccCHHHhcCCCCCEEECcCCcc-------cCcccHHHhcCCCCCEEECCCCcccCcCCHHH----cCCCCceEEE
Confidence 211 112345555555555553211 11234455555666666666555442 11111 1233444444
Q ss_pred EEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEec
Q 000202 1592 FVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIIS 1670 (1866)
Q Consensus 1592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~ 1670 (1866)
+..+.-....+.++ ........+.+...... .+|.+. ..+..+..+.+.++.-...+| ..++.+++|+.|+++
T Consensus 473 L~~N~l~~~~p~~l----~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 473 LDFNDLTGEIPSGL----SNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLN 546 (768)
T ss_dssp CCSSCCCSCCCGGG----GGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECC
T ss_pred ecCCcccCcCCHHH----hcCCCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECC
Confidence 43111111111111 11111122222222222 222221 112222223332222111222 123444555555554
Q ss_pred ccCCccEeccCCCccccccccccccc-----------------------------------cccccccc------ccccc
Q 000202 1671 ECLKIKTVVDTKEHTTAVFPSLENLT-----------------------------------LNHLWDLT------CIWQG 1709 (1866)
Q Consensus 1671 ~c~~l~~i~~~~~~~~~~f~~L~~L~-----------------------------------l~~~~~L~------~~~~~ 1709 (1866)
+|+-...++.... ....+..+. +..+..+. ....+
T Consensus 547 ~N~l~g~ip~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 547 TNLFNGTIPAAMF----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp SSEEESBCCGGGG----TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred CCccCCcCChHHh----cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 4432222221100 000000000 00000000 00000
Q ss_pred cc--cccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccc
Q 000202 1710 IL--PEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPEL 1787 (1866)
Q Consensus 1710 ~~--~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L 1787 (1866)
.. ..+.+++|+.|++++| +++...| ..+.++++|+.|++++|.--..+| ..+..+++|+.|+|+++.--
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip-------~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSIP-------DEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCE
T ss_pred cCchhhhccccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCccCCCCC-------hHHhCCCCCCEEECCCCccc
Confidence 11 1224688999999998 5665444 467889999999999984333443 23567899999999998744
Q ss_pred ccccc--CCCCCccEEEEEcCccccccC
Q 000202 1788 ANIWR--NDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1788 ~~i~~--~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
..++. ..+++|++|++++|+--..+|
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCC
Confidence 45543 378999999999986544444
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=2.8e-19 Score=237.14 Aligned_cols=371 Identities=13% Similarity=0.169 Sum_probs=254.6
Q ss_pred CCccccccCcEEEccCCCCCC------------------CCC-CC--CCCcccEEEccCCcCCcccChhHHhcCCCCcEE
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQT------------------LPG-RP--SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVL 1427 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~------------------l~~-~~--~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L 1427 (1866)
..+..+++|+.|++++|.+.. +|. +. .+++|++|+|++|.....+|..+ +++++|++|
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLI 278 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEE
Confidence 346778999999999999987 884 55 79999999999997788888766 789999999
Q ss_pred EccCCC-CC--CCChhhcCC------CCCcEEecccccCcccCCc--cccCCCCCcEEEccCCCCC-cCChhhcCCCccc
Q 000202 1428 NLSKTR-IK--SLPETLVNL------KCLQILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLR 1495 (1866)
Q Consensus 1428 ~Ls~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~ 1495 (1866)
+|++|. ++ .+|..+++| ++|++|+|++|.+. .+|. .++++++|++|++++|.++ .+| .++++++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 999998 88 489999887 99999999999976 8998 8999999999999999999 899 899999999
Q ss_pred eeccccccccCCCccccCCCCCCChhhhhcccc-CcEeecccCCCCCccccccccccccccCCC--CCCEEEeecCCccc
Q 000202 1496 YLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA-LETLSIDVHPGDKRWDKDVKIVITEVSGLT--KLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1496 ~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~ 1572 (1866)
+|+++++. ...+|. .+..+++ |+.|+++.+.. ..++..+..+. +|+.|+++.|.+..
T Consensus 357 ~L~L~~N~------l~~lp~------~l~~l~~~L~~L~Ls~N~l--------~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 357 SLNLAYNQ------ITEIPA------NFCGFTEQVENLSFAHNKL--------KYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EEECCSSE------EEECCT------TSEEECTTCCEEECCSSCC--------SSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred EEECCCCc------cccccH------hhhhhcccCcEEEccCCcC--------cccchhhhhcccCccCEEECcCCcCCC
Confidence 99987642 223443 2678888 99999985442 23555555544 89999999988764
Q ss_pred hH-HhhccC---ccccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceeccccc
Q 000202 1573 VA-EFLKGS---AWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHL 1648 (1866)
Q Consensus 1573 ~~-~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~ 1648 (1866)
.. ..+... .....+|+.|.+ ....+..+|+..+..+..+..+.+..+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~L----------------------------s~N~l~~lp~~~~~~l~~L~~L~Ls~N- 467 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINL----------------------------SNNQISKFPKELFSTGSPLSSINLMGN- 467 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEEC----------------------------CSSCCCSCCTHHHHTTCCCSEEECCSS-
T ss_pred cchhhhcccccccccCCCCCEEEC----------------------------cCCccCcCCHHHHccCCCCCEEECCCC-
Confidence 31 111100 001123333322 222333455554444444444444332
Q ss_pred CceecCCCCcc-------cccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccE
Q 000202 1649 SIVSLSDFGVG-------YMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRI 1721 (1866)
Q Consensus 1649 ~l~~L~~~~l~-------~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~ 1721 (1866)
.+..++...+. .+++|+.|++++| .+..++... ....+++|+.|+++++. ++.+ +...+.+++|+.
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~ 540 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF--RATTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKG 540 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG--STTTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCE
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh--hhccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCE
Confidence 23355443222 3449999999995 566655331 11368999999999853 3322 122346899999
Q ss_pred EeEecCc-----cCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc-----
Q 000202 1722 LSIHACR-----HLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW----- 1791 (1866)
Q Consensus 1722 L~I~~C~-----~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~----- 1791 (1866)
|++++|. ++....| ..+.++++|++|+|++|. +..++.. .+++|+.|+|++++ +.++.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~ip~~---------~~~~L~~L~Ls~N~-l~~~~~~~~~ 608 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSND-IRKVNEK---------ITPNISVLDIKDNP-NISIDLSYVC 608 (636)
T ss_dssp EECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSC-CCBCCSC---------CCTTCCEEECCSCT-TCEEECTTTH
T ss_pred EECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCc-CCccCHh---------HhCcCCEEECcCCC-CccccHHhcc
Confidence 9997643 2333223 467789999999999995 4666521 33899999999997 33331
Q ss_pred c---C---CCCCccEEEEEcCcccc
Q 000202 1792 R---N---DWPSLEYISFYGCPKLK 1810 (1866)
Q Consensus 1792 ~---~---~lpsLe~L~I~~Cp~L~ 1810 (1866)
. . .+...+..+|++||.|+
T Consensus 609 ~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 609 PYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp HHHHTTCCEEECCTTSEEESCGGGC
T ss_pred hhhhcccceeecCCccccCCCcccc
Confidence 1 1 12233556889999875
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=1.6e-18 Score=213.02 Aligned_cols=290 Identities=18% Similarity=0.213 Sum_probs=204.4
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|++|++++| .+..+|. +..+++|++|++++|.+..+|. +..
T Consensus 55 ~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~ 130 (347)
T 4fmz_A 55 KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNISDISP-LAN 130 (347)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTT
T ss_pred ccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCCcccCchh-hcc
Confidence 34445567788999999999999999888889999999999988 5666653 5889999999999999999887 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|++++|.....+| .+..+++|++|++++|.+..++. ++.+++|++|+++++.- ..+ ..+
T Consensus 131 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l------~~~-------~~~ 195 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI------EDI-------SPL 195 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC------CCC-------GGG
T ss_pred CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc------ccc-------ccc
Confidence 9999999999998777655 49999999999999999998876 89999999999976531 111 126
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccc
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
..+++|+.|+++.+.... .. .+..+++|+.|+++.|.+..++.
T Consensus 196 ~~l~~L~~L~l~~n~l~~--------~~-~~~~~~~L~~L~l~~n~l~~~~~---------------------------- 238 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITD--------IT-PVANMTRLNSLKIGNNKITDLSP---------------------------- 238 (347)
T ss_dssp GGCTTCCEEECCSSCCCC--------CG-GGGGCTTCCEEECCSSCCCCCGG----------------------------
T ss_pred cCCCccceeecccCCCCC--------Cc-hhhcCCcCCEEEccCCccCCCcc----------------------------
Confidence 789999999998654321 22 27788999999998876543221
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKE 1683 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1683 (1866)
+..+++|++|++++| .+..+.
T Consensus 239 ------------------------------------------------------~~~l~~L~~L~l~~n-~l~~~~---- 259 (347)
T 4fmz_A 239 ------------------------------------------------------LANLSQLTWLEIGTN-QISDIN---- 259 (347)
T ss_dssp ------------------------------------------------------GTTCTTCCEEECCSS-CCCCCG----
T ss_pred ------------------------------------------------------hhcCCCCCEEECCCC-ccCCCh----
Confidence 123455666666654 233321
Q ss_pred cccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1684 HTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1684 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
....+++|+.|+++++ .++.+ .....+++|+.|++++| .++...+ ..+..+++|++|++++|+ ++.++.
T Consensus 260 -~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-- 328 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-- 328 (347)
T ss_dssp -GGTTCTTCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG--
T ss_pred -hHhcCCCcCEEEccCC-ccCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC--
Confidence 1233455555555543 22211 11234677777777777 4554433 455667777777777774 444321
Q ss_pred ccccccccCCCCcCEEeccCCc
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+..+++|+.|++++|+
T Consensus 329 ------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 ------LASLSKMDSADFANQV 344 (347)
T ss_dssp ------GGGCTTCSEESSSCC-
T ss_pred ------hhhhhccceeehhhhc
Confidence 3356777777777665
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=6.1e-19 Score=220.26 Aligned_cols=127 Identities=20% Similarity=0.306 Sum_probs=72.8
Q ss_pred ccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~ 1449 (1866)
.+.+++.+++.++.+..+|. +..+++|++|++++| .+..+++..+..+++|++|+|++|.+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34566666666666666554 345566666666655 345555544455666666666666666554 33566666666
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecccc
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
|+|++|.+. .+|.. ++++++|++|++++|.++.++. .++++++|++|++++
T Consensus 122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 666666533 44433 3566666666666666665533 356666666666543
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=2.4e-19 Score=243.57 Aligned_cols=408 Identities=14% Similarity=0.023 Sum_probs=226.3
Q ss_pred CCccccccCcEEEccCCCCC-CCC---CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hh---
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQ-TLP---GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET--- 1440 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~-~l~---~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~--- 1440 (1866)
..+..+++|++|++++|.+. .+| .+..+++|++|+|++|.....+|..++.++++|++|+|++|.++..+ ..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 45677888888888888876 244 35678888888888886555666665567888888888888887544 34
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
++++++|++|++++|.+.+..|. +++++|++|++++|.+...++.++++++|++|++.++.-.. ...
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-----------~~~ 240 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-----------DFS 240 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-----------CHH
T ss_pred hccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-----------ccc
Confidence 67888888888888887766553 78888888999888887644448888888888886542110 012
Q ss_pred hhhhccccCcEeecccCCCCCcc--------------cccc-ccccccccC-CCCCCEEEeecCCccch-HHhhccCccc
Q 000202 1521 DILSRLQALETLSIDVHPGDKRW--------------DKDV-KIVITEVSG-LTKLSSLSFHFPEIECV-AEFLKGSAWN 1583 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~--------------~~~~-~~~~~~l~~-l~~L~~L~l~~~~l~~~-~~~~~~~~~~ 1583 (1866)
..+..+++|+.|+++.+...... .+.. ..++..+.. +++|+.|+++.|.+... +..+ ..
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~----~~ 316 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF----GS 316 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG----GG
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH----hc
Confidence 23555666666666543321000 0000 122233322 24555555555443321 1111 12
Q ss_pred cCCcceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHHHhhcceecccccCceecCCCCccc--
Q 000202 1584 NQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGY-- 1660 (1866)
Q Consensus 1584 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~-- 1660 (1866)
..+|+.|.+..+.-...++... +........+.+...... .+|.........+..+.+..+.-...++. .+..
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~ 392 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNP 392 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCST
T ss_pred CCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcc
Confidence 2334444332111000111100 000011111222222222 33433322211334443333221111111 1222
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
+++|++|++++|.-...++. ....+++|+.|+++++.- +... +...+.+++|+.|++++| +++...| ..+.
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l-~~~~--p~~l~~l~~L~~L~L~~n-~l~~~~p-~~~~ 463 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPP----TLSNCSELVSLHLSFNYL-SGTI--PSSLGSLSKLRDLKLWLN-MLEGEIP-QELM 463 (768)
T ss_dssp TCCCCEEECCSSEEEEECCG----GGGGCTTCCEEECCSSEE-ESCC--CGGGGGCTTCCEEECCSS-CCCSCCC-GGGG
T ss_pred cCCccEEECCCCccccccCH----HHhcCCCCCEEECcCCcc-cCcc--cHHHhcCCCCCEEECCCC-cccCcCC-HHHc
Confidence 56777777777543323322 234567788888776532 2110 111235778888888888 4443333 3566
Q ss_pred hccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc--cCCCCCccEEEEEcCccccccC
Q 000202 1741 FLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW--RNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~--~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
.+++|++|++++|.-...++ ..+..+++|+.|+|++|.-...++ .+.+++|++|++++|.-...+|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIP-------SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CCCCceEEEecCCcccCcCC-------HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 78888888888874332332 234578999999999987443443 3478999999999986544444
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=227.23 Aligned_cols=395 Identities=15% Similarity=0.114 Sum_probs=239.6
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|.... ++|+.|++++| .+..+++..+..+++|++|+|++|.++.+ |..++++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 578999999999996333 89999999988 67788877779999999999999999977 6899999999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC--cEe
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL--ETL 1532 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L--~~L 1532 (1866)
+. .+|.. .+++|++|++++|.++. +|..++++++|++|+++++. +....+..+++| +.|
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~--------------l~~~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH--------------LEKSSVLPIAHLNISKV 143 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS--------------CCGGGGGGGTTSCEEEE
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc--------------cchhhccccccceeeEE
Confidence 55 78877 89999999999999986 57899999999999997632 112345667777 888
Q ss_pred ecccCCC--CCcccccc-------------------ccccccccCCCCCCEEEeecCC----ccchHHhhccCccccCCc
Q 000202 1533 SIDVHPG--DKRWDKDV-------------------KIVITEVSGLTKLSSLSFHFPE----IECVAEFLKGSAWNNQQL 1587 (1866)
Q Consensus 1533 ~l~~~~~--~~~~~~~~-------------------~~~~~~l~~l~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L 1587 (1866)
+++.+.. ........ ......+..+++|+.|+++.|. ...+...+. .....++|
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L 222 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL 222 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccch
Confidence 8876543 11000000 0111233456777777777764 111222221 12234566
Q ss_pred ceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHH----HHHHhhcceecccccCceecCCCCcccc-
Q 000202 1588 TEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVI----QILIHSTAFYVDHHLSIVSLSDFGVGYM- 1661 (1866)
Q Consensus 1588 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~----~~l~~~~~l~~~~~~~l~~L~~~~l~~l- 1661 (1866)
+.+.+....-.......+..... ......+.+...... .+|.+.+ ..+..+..+.+..+ .+ .+|...+..+
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~ 299 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIF 299 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHhh-hCcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhccc
Confidence 66665432110000000000000 011222333333222 2332210 00000111111100 01 1111111111
Q ss_pred --cCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccc-hhh
Q 000202 1662 --SGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFT-CSM 1738 (1866)
Q Consensus 1662 --~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~-~~~ 1738 (1866)
++|+.|++++|.- ..+. ....+++|+.|+++++. ++... ....+.+++|+.|++++| +++.++. ...
T Consensus 300 ~~~~L~~L~l~~n~l-~~~~-----~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 369 (520)
T 2z7x_B 300 SNMNIKNFTVSGTRM-VHML-----CPSKISPFLHLDFSNNL-LTDTV--FENCGHLTELETLILQMN-QLKELSKIAEM 369 (520)
T ss_dssp HTCCCSEEEEESSCC-CCCC-----CCSSCCCCCEEECCSSC-CCTTT--TTTCCCCSSCCEEECCSS-CCCBHHHHHHH
T ss_pred ccCceeEEEcCCCcc-cccc-----chhhCCcccEEEeECCc-cChhh--hhhhccCCCCCEEEccCC-ccCccccchHH
Confidence 4577777777542 2221 11457899999998763 22211 112246899999999999 6665432 235
Q ss_pred hhhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccccccccCCCCCccEEEEEcCccccccC
Q 000202 1739 IQFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1739 l~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+..+++|++|++++|. +.. ++.. .+..+++|+.|+|++|.--..++....++|+.|++++| +++.+|
T Consensus 370 ~~~l~~L~~L~Ls~N~-l~~~l~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNS-VSYDEKKG------DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp HTTCTTCCEEECCSSC-CBCCGGGC------SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCC
T ss_pred HhhCCCCCEEECCCCc-CCcccccc------hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccc
Confidence 7789999999999984 433 5421 24577999999999987333333333379999999998 566655
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.2e-18 Score=226.27 Aligned_cols=404 Identities=15% Similarity=0.174 Sum_probs=214.2
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 56777777777777666 4667777777777766 55566555557777777777777777777766 6777777777
Q ss_pred ccccCcc-cCCccccCCCCCcEEEccCCCCCcCChhhcCCCcc--ceecccccccc-CCC---cccc---------CCCC
Q 000202 1453 RDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSL--RYLTVFFFGSM-YKS---EYIK---------LPPD 1516 (1866)
Q Consensus 1453 ~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~~~~-~~~---~~~~---------l~~~ 1516 (1866)
++|.+.+ ..|..++++++|++|++++|.++.. .+..+++| ++|++..+.-. ... .... +..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 7777554 3456777777777777777777642 34444444 77766553210 000 0000 0000
Q ss_pred C----CChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch--HHhhccCccccCCccee
Q 000202 1517 L----ISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV--AEFLKGSAWNNQQLTEF 1590 (1866)
Q Consensus 1517 ~----~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~L~~l 1590 (1866)
. +....+..+++|+.|+++.+... ..........+..+++|+.|+++.+.+... ...... ....+|+.|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~--~~~~~L~~L 281 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDEN---CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF--FWPRPVEYL 281 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTT---HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH--HTTSSEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccc---cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh--hhcccccEE
Confidence 0 11112334455555555432100 000111223344555555555554443221 011100 012366666
Q ss_pred EEEEecccccccccccccccccccCccce---eEeecCCCCChHHHHHHHh---hcceecccccCceecCCCCcccccCC
Q 000202 1591 KFVVGHDVKSIVSWVTDYVQCDYNQHDRC---LRFVNGKNVPPEVIQILIH---STAFYVDHHLSIVSLSDFGVGYMSGL 1664 (1866)
Q Consensus 1591 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~p~~~~~~l~~---~~~l~~~~~~~l~~L~~~~l~~l~~L 1664 (1866)
.+....-...++.+..... ......+. +..... .+|...+..+.. +..+.+..+. +..+. ..+.+++|
T Consensus 282 ~l~~n~l~~~ip~~~~~~~--~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~--~~~~l~~L 355 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYS--ETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP-FIHMV--CPPSPSSF 355 (562)
T ss_dssp EEEEEEECSCCCCCCCCCC--SCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC--CCSSCCCC
T ss_pred EEeccEeeccccchhhhcc--cccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC-ccccc--CccCCCCc
Confidence 6653321112232221100 01111111 122222 556443333311 2333333222 21111 12678899
Q ss_pred cEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCcc-ccchhhhhhcc
Q 000202 1665 KFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEY-VFTCSMIQFLA 1743 (1866)
Q Consensus 1665 ~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~-l~~~~~l~~L~ 1743 (1866)
++|++++|.--..++. ....+++|+.|+++++ +++.+.......+.+++|+.|++++| +++. ++. ..+..++
T Consensus 356 ~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~~l~ 428 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYD-RTCAWAE 428 (562)
T ss_dssp CEEECCSSCCCTTTTT----TCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSS-CCCCCCT
T ss_pred eEEECCCCccccchhh----hhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccCh-hhhcCcc
Confidence 9999988643221221 2356788888888874 33321111111346788999999988 4555 433 3456788
Q ss_pred ccceeeeccccccceecccCccccccccCC-CCcCEEeccCCccccccccC--CCCCccEEEEEcCccccccC
Q 000202 1744 KLEELTVEYCLAVKSIILDGEITYSSCIML-PSLKKLRLHHLPELANIWRN--DWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1744 sLe~L~I~~C~~L~~l~~~~~~~~~~~~~l-p~L~~L~L~~c~~L~~i~~~--~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+|++|++++|. +.... ...+ ++|+.|+|+++ .++.++.. .+++|++|++++| +|+.+|
T Consensus 429 ~L~~L~l~~n~-l~~~~---------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 489 (562)
T 3a79_B 429 SILVLNLSSNM-LTGSV---------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVP 489 (562)
T ss_dssp TCCEEECCSSC-CCGGG---------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCC
T ss_pred cCCEEECCCCC-CCcch---------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCC
Confidence 89999998884 32111 1233 68999999887 57777443 6788999998887 455555
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=3e-18 Score=220.31 Aligned_cols=316 Identities=19% Similarity=0.173 Sum_probs=160.8
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.++..++.+..+|... .++++.|+|++| .+..+++..|..+++|++|+|++|.+..+ |..++++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34555666666666321 246667777665 45555555556667777777777766655 5566677777777777766
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+....+..++++++|++|++++|.+..+ |..+.++++|++|++..+. ...+ ....+.++++|+.|+++
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~------l~~~-----~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND------LVYI-----SHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT------CCEE-----CTTSSTTCTTCCEEEEE
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc------ccee-----ChhhccCCCCCCEEECC
Confidence 4433333456677777777777766654 4456666677776664421 1111 11124456666666665
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccC
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQ 1615 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 1615 (1866)
.+.... .....+..+++|+.|+++.|.+..+... ......+|+.|.+....
T Consensus 161 ~n~l~~-------~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~------------------- 211 (477)
T 2id5_A 161 KCNLTS-------IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWP------------------- 211 (477)
T ss_dssp SCCCSS-------CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCT-------------------
T ss_pred CCcCcc-------cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCc-------------------
Confidence 432111 1122355666666666666654432110 00111222222221000
Q ss_pred ccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccccccc
Q 000202 1616 HDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENL 1695 (1866)
Q Consensus 1616 ~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L 1695 (1866)
.+..++.. .....+|+.|++++| .++.++.. ....+++|+.|
T Consensus 212 ---------------------------------~~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L 253 (477)
T 2id5_A 212 ---------------------------------YLDTMTPN-CLYGLNLTSLSITHC-NLTAVPYL---AVRHLVYLRFL 253 (477)
T ss_dssp ---------------------------------TCCEECTT-TTTTCCCSEEEEESS-CCCSCCHH---HHTTCTTCCEE
T ss_pred ---------------------------------cccccCcc-cccCccccEEECcCC-cccccCHH---HhcCccccCee
Confidence 00001100 112236777777764 34433321 22345667777
Q ss_pred cccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCC
Q 000202 1696 TLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPS 1775 (1866)
Q Consensus 1696 ~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~ 1775 (1866)
+++++. ++.+.. .....+++|+.|++++| +++.+.+ ..+.++++|+.|+|++| .++.++.. .+..+++
T Consensus 254 ~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~ 321 (477)
T 2id5_A 254 NLSYNP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSGN-QLTTLEES------VFHSVGN 321 (477)
T ss_dssp ECCSSC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCSS-CCSCCCGG------GBSCGGG
T ss_pred ECCCCc-CCccCh--hhccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCCC-cCceeCHh------HcCCCcc
Confidence 666542 221111 11234566777777766 4555433 34556677777777766 44444311 1335566
Q ss_pred cCEEeccCCc
Q 000202 1776 LKKLRLHHLP 1785 (1866)
Q Consensus 1776 L~~L~L~~c~ 1785 (1866)
|+.|+|+++|
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 7777776655
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=6.2e-18 Score=216.29 Aligned_cols=330 Identities=19% Similarity=0.236 Sum_probs=234.1
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..+++ ++.+++|++|+|++|.+..+|. +++
T Consensus 57 ~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 57 GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 34445567788999999999999998888889999999999988 5666666 5889999999999999999886 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|++++|.+. .+| .++++++|++|+++ +.+..++. ++++++|++|+++++.- . .+ ..+
T Consensus 133 l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~-----~~-------~~l 195 (466)
T 1o6v_A 133 LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-S-----DI-------SVL 195 (466)
T ss_dssp CTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-C-----CC-------GGG
T ss_pred CCCCCEEECCCCccC-CCh-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-C-----CC-------hhh
Confidence 999999999999854 455 58999999999996 45555554 89999999999876431 1 11 236
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccc
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVS 1603 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 1603 (1866)
..+++|+.|+++.+.... .. .+..+++|+.|+++.|.+..++. ....++|+.|.+.. ..+.....
T Consensus 196 ~~l~~L~~L~l~~n~l~~--------~~-~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~-n~l~~~~~ 260 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISD--------IT-PLGILTNLDELSLNGNQLKDIGT-----LASLTNLTDLDLAN-NQISNLAP 260 (466)
T ss_dssp GGCTTCSEEECCSSCCCC--------CG-GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCS-SCCCCCGG
T ss_pred ccCCCCCEEEecCCcccc--------cc-cccccCCCCEEECCCCCcccchh-----hhcCCCCCEEECCC-Cccccchh
Confidence 788899999988554221 21 26678889999999888776532 12345666666532 11111110
Q ss_pred cccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCC
Q 000202 1604 WVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKE 1683 (1866)
Q Consensus 1604 ~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~ 1683 (1866)
..... .+..+.+.. ..+..++. +..+++|+.|++++| .+..+..
T Consensus 261 ----------~~~l~-------------------~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--- 304 (466)
T 1o6v_A 261 ----------LSGLT-------------------KLTELKLGA-NQISNISP--LAGLTALTNLELNEN-QLEDISP--- 304 (466)
T ss_dssp ----------GTTCT-------------------TCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSS-CCSCCGG---
T ss_pred ----------hhcCC-------------------CCCEEECCC-CccCcccc--ccCCCccCeEEcCCC-cccCchh---
Confidence 00001 111222221 12233322 567899999999996 4554432
Q ss_pred cccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccC
Q 000202 1684 HTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDG 1763 (1866)
Q Consensus 1684 ~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~ 1763 (1866)
...+++|+.|+++++. ++. ..+...+++|+.|++++| +++.+ ..+.++++|+.|++++|. +..++.
T Consensus 305 --~~~l~~L~~L~L~~n~-l~~----~~~~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-- 370 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNN-ISD----ISPVSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-- 370 (466)
T ss_dssp --GGGCTTCSEEECCSSC-CSC----CGGGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCGG--
T ss_pred --hcCCCCCCEEECcCCc-CCC----chhhccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccch--
Confidence 3568999999999863 332 233467899999999999 77776 357789999999999984 444331
Q ss_pred ccccccccCCCCcCEEeccCCc
Q 000202 1764 EITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1764 ~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+..+++|+.|++++|+
T Consensus 371 ------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 371 ------LANLTRITQLGLNDQA 386 (466)
T ss_dssp ------GTTCTTCCEEECCCEE
T ss_pred ------hhcCCCCCEEeccCCc
Confidence 4578999999999987
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=4.1e-18 Score=224.72 Aligned_cols=137 Identities=24% Similarity=0.262 Sum_probs=116.6
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hh
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ET 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~ 1440 (1866)
+++..|.. -.++++.|++++|.+..++ .+..+++|++|+|++| .+..+++..|+++++|++|+|++|.++.+| ..
T Consensus 18 ~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 44444432 2357999999999999776 5789999999999988 678888877899999999999999999776 78
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++++++|++|++++|.+....+..++++++|++|++++|.++. +|..++++++|++|+++++
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 9999999999999998655444479999999999999999985 7999999999999999764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.5e-18 Score=226.75 Aligned_cols=303 Identities=19% Similarity=0.206 Sum_probs=172.9
Q ss_pred ccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~ 1449 (1866)
.+.+++.+++.+|.+..+|. +..+++|++|+|++| .+..+++..|+.+++|++|+|++|.+..+|+ .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 34556666666666665554 345566666666655 3455555444566666666666666665543 3466666666
Q ss_pred EecccccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|+|++|.+. .+|.. ++++++|++|++++|.++.+|. .++++++|++|+++++.- .. ..+..++
T Consensus 128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l------~~--------~~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------TH--------VDLSLIP 192 (597)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC------SB--------CCGGGCT
T ss_pred EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC------CC--------cChhhhh
Confidence 666666543 33333 4666666666666666665533 366666666666543210 00 1134455
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+. ...+....+|+.|+++.|.+..++.. .+.+|+.|.+
T Consensus 193 ~L~~L~l~~n~------------l~~l~~~~~L~~L~ls~n~l~~~~~~------~~~~L~~L~L--------------- 239 (597)
T 3oja_B 193 SLFHANVSYNL------------LSTLAIPIAVEELDASHNSINVVRGP------VNVELTILKL--------------- 239 (597)
T ss_dssp TCSEEECCSSC------------CSEEECCTTCSEEECCSSCCCEEECS------CCSCCCEEEC---------------
T ss_pred hhhhhhcccCc------------cccccCCchhheeeccCCcccccccc------cCCCCCEEEC---------------
Confidence 56666655321 11223344566666666554432110 0011222211
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
... .+... ..++.+++|+.|++++| .+..+... ...
T Consensus 240 -------------~~n-------------------------~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~---~~~ 275 (597)
T 3oja_B 240 -------------QHN-------------------------NLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYH---PFV 275 (597)
T ss_dssp -------------CSS-------------------------CCCCC--GGGGGCTTCSEEECCSS-CCCEEESG---GGT
T ss_pred -------------CCC-------------------------CCCCC--hhhccCCCCCEEECCCC-ccCCCCHH---Hhc
Confidence 111 11111 12567889999999985 45554332 345
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
.+++|+.|+++++ .++.+ ....+.+|+|+.|++++| .++.+++ .+..+++|+.|+|++|. +..++
T Consensus 276 ~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~------- 340 (597)
T 3oja_B 276 KMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------- 340 (597)
T ss_dssp TCSSCCEEECTTS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC-------
T ss_pred CccCCCEEECCCC-CCCCC---CcccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC-------
Confidence 6889999999874 33332 112245899999999998 6776654 46778999999999984 44432
Q ss_pred ccccCCCCcCEEeccCCc
Q 000202 1768 SSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~ 1785 (1866)
...+++|+.|+|+++|
T Consensus 341 --~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHND 356 (597)
T ss_dssp --CCTTCCCSEEECCSSC
T ss_pred --hhhcCCCCEEEeeCCC
Confidence 4478899999998876
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3.8e-18 Score=225.06 Aligned_cols=307 Identities=15% Similarity=0.157 Sum_probs=223.7
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCc
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 1472 (1866)
..+.+++.|++++| .+..+|+.+++.+++|++|+|++|.+..+| ..++.+++|++|+|++|.+.+..|..++++++|+
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 34678999999876 688899998899999999999999999776 4899999999999999998777777789999999
Q ss_pred EEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccccccccc
Q 000202 1473 VLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVI 1551 (1866)
Q Consensus 1473 ~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 1551 (1866)
+|+|++|.++.+|.. ++++++|++|+++++.- ..+ ....+..+++|+.|+++.+....
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l------~~~-----~~~~~~~l~~L~~L~L~~N~l~~---------- 185 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL------ERI-----EDDTFQATTSLQNLQLSSNRLTH---------- 185 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CBC-----CTTTTTTCTTCCEEECTTSCCSB----------
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC------CCC-----ChhhhhcCCcCcEEECcCCCCCC----------
Confidence 999999999999877 58999999999876421 112 22346788999999998654221
Q ss_pred ccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChH
Q 000202 1552 TEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPE 1631 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~ 1631 (1866)
..+..+++|+.|+++.|.+..+. .+.+|+.|.+. .
T Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~--------~~~~L~~L~ls----------------------------~--------- 220 (597)
T 3oja_B 186 VDLSLIPSLFHANVSYNLLSTLA--------IPIAVEELDAS----------------------------H--------- 220 (597)
T ss_dssp CCGGGCTTCSEEECCSSCCSEEE--------CCTTCSEEECC----------------------------S---------
T ss_pred cChhhhhhhhhhhcccCcccccc--------CCchhheeecc----------------------------C---------
Confidence 13567889999999988765432 12234433321 0
Q ss_pred HHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccc
Q 000202 1632 VIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGIL 1711 (1866)
Q Consensus 1632 ~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~ 1711 (1866)
..+..++. ...++|+.|++++|. +..+. ....+++|+.|+++++. ++.+. +.
T Consensus 221 ----------------n~l~~~~~---~~~~~L~~L~L~~n~-l~~~~-----~l~~l~~L~~L~Ls~N~-l~~~~--~~ 272 (597)
T 3oja_B 221 ----------------NSINVVRG---PVNVELTILKLQHNN-LTDTA-----WLLNYPGLVEVDLSYNE-LEKIM--YH 272 (597)
T ss_dssp ----------------SCCCEEEC---SCCSCCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSC-CCEEE--SG
T ss_pred ----------------Cccccccc---ccCCCCCEEECCCCC-CCCCh-----hhccCCCCCEEECCCCc-cCCCC--HH
Confidence 00111111 123689999998864 44331 34568999999998753 22211 11
Q ss_pred cccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccccc
Q 000202 1712 PEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANIW 1791 (1866)
Q Consensus 1712 ~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~ 1791 (1866)
..+.+++|+.|++++| +++.++. ....+++|+.|++++| .+..++. .+..+++|+.|+|++|+ +..+.
T Consensus 273 ~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~-------~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 273 PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVER-------NQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCGG-------GHHHHTTCSEEECCSSC-CCCCC
T ss_pred HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCC-CCCccCc-------ccccCCCCCEEECCCCC-CCCcC
Confidence 2346899999999998 7777644 3456899999999998 4555542 23468999999999986 66666
Q ss_pred cCCCCCccEEEEEcCc
Q 000202 1792 RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1792 ~~~lpsLe~L~I~~Cp 1807 (1866)
...+++|+.|++++||
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 6788999999999876
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=234.05 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=71.4
Q ss_pred CccccccCcEEEccCCCC-CCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChh--hcC
Q 000202 1370 SEEEWTHAKMIFFMDNDL-QTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPET--LVN 1443 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l-~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~--i~~ 1443 (1866)
.+..+++|+.|++++|.. ..++ .+.++++|++|+|++| .+..+++..|+.+++|++|+|++|.+.. +|.. +++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 355566666666666632 2332 3456666666666655 3444444444666666666666666653 3443 666
Q ss_pred CCCCcEEecccccCcccCC-ccccCCCCCcEEEccCCCCCcC-ChhhcCC--Cccceecc
Q 000202 1444 LKCLQILILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKML-PKEIGKL--TSLRYLTV 1499 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L--~~L~~L~l 1499 (1866)
+++|++|+|++|.+.+..| ..+++|++|++|++++|.++.+ |..++.+ ++|+.|++
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 6666666666666544433 3566666666666666665532 3344433 34444444
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.5e-17 Score=222.59 Aligned_cols=126 Identities=25% Similarity=0.287 Sum_probs=97.4
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
..++.|++++|.++.+| .+..+++|++|+|++| .+..+|+..|+++++|++|+|++|+++.+|. .+++|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36778888888888776 3677888888888877 6777777777888888888888888888774 568888888888
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+..|..+++|++|++|++++|.++. +|..++.+++|++|++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 88887655444567888888888888888774 467778888888888765
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=2.2e-17 Score=206.12 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=193.1
Q ss_pred ccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L 1447 (1866)
+..+++|+.|++.+|.+..++ .+..+++|+.|++++| .+..+++..++.+++|++|+|++|.+..+|.. ++++++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 456889999999999999776 4678999999999988 57788877779999999999999999999977 4899999
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
++|+|++|.+....|..++++++|++|++++|.++.++ ++.+++|++|++.+..- . .+....
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l----~------------~~~~~~ 205 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL----S------------TLAIPI 205 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC----S------------EEECCS
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc----c------------ccCCCC
Confidence 99999999988777888999999999999999998875 56778888887754210 0 022234
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEecccccccccccc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTD 1607 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 1607 (1866)
+|+.|+++.+... .++. ...++|+.|+++.|.+...+
T Consensus 206 ~L~~L~l~~n~l~--------~~~~--~~~~~L~~L~l~~n~l~~~~--------------------------------- 242 (390)
T 3o6n_A 206 AVEELDASHNSIN--------VVRG--PVNVELTILKLQHNNLTDTA--------------------------------- 242 (390)
T ss_dssp SCSEEECCSSCCC--------EEEC--CCCSSCCEEECCSSCCCCCG---------------------------------
T ss_pred cceEEECCCCeee--------eccc--cccccccEEECCCCCCcccH---------------------------------
Confidence 5666666543211 1111 12345555555554432110
Q ss_pred cccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccc
Q 000202 1608 YVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTA 1687 (1866)
Q Consensus 1608 ~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 1687 (1866)
.++.+++|++|++++| .+..+... ...
T Consensus 243 -------------------------------------------------~l~~l~~L~~L~Ls~n-~l~~~~~~---~~~ 269 (390)
T 3o6n_A 243 -------------------------------------------------WLLNYPGLVEVDLSYN-ELEKIMYH---PFV 269 (390)
T ss_dssp -------------------------------------------------GGGGCTTCSEEECCSS-CCCEEESG---GGT
T ss_pred -------------------------------------------------HHcCCCCccEEECCCC-cCCCcChh---Hcc
Confidence 1345677888888775 44444322 234
Q ss_pred cccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCcccc
Q 000202 1688 VFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITY 1767 (1866)
Q Consensus 1688 ~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~ 1767 (1866)
.+++|+.|+++++ +++.+ ......+|+|+.|++++| +++.+++ .+..+++|++|++++|. ++.++
T Consensus 270 ~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~------- 334 (390)
T 3o6n_A 270 KMQRLERLYISNN-RLVAL---NLYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK------- 334 (390)
T ss_dssp TCSSCCEEECCSS-CCCEE---ECSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC-------
T ss_pred ccccCCEEECCCC-cCccc---CcccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeC-------
Confidence 4667777777653 22221 111235678888888887 5666543 35667788888887773 43332
Q ss_pred ccccCCCCcCEEeccCCc
Q 000202 1768 SSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1768 ~~~~~lp~L~~L~L~~c~ 1785 (1866)
...+++|+.|+|+++|
T Consensus 335 --~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHND 350 (390)
T ss_dssp --CCTTCCCSEEECCSSC
T ss_pred --chhhccCCEEEcCCCC
Confidence 3356677777776655
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-17 Score=209.94 Aligned_cols=291 Identities=18% Similarity=0.145 Sum_probs=191.8
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...|.+..+++|+.|++++|.+..+| +..+++|+.|++++| .+..+| ++.+++|++|++++|.++.+| ++.
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCC
Confidence 3444456778899999999999999886 788999999999988 466665 578999999999999999886 899
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDI 1522 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 1522 (1866)
+++|++|++++|.+.+ +| ++++++|++|++++| .+..+ .++.+++|++|+++++. + ..++
T Consensus 126 l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l-----~~l~-------- 186 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-I-----TELD-------- 186 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-C-----CCCC--------
T ss_pred CCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-c-----ceec--------
Confidence 9999999999998655 44 889999999999999 55566 47889999999987642 1 1111
Q ss_pred hhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccccccc
Q 000202 1523 LSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDVKSIV 1602 (1866)
Q Consensus 1523 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 1602 (1866)
+..+++|+.|+++.+... .+ .+..+++|+.|+++.|.+..++ ....++|+.|.+.. ..
T Consensus 187 l~~l~~L~~L~l~~N~l~--------~~--~l~~l~~L~~L~Ls~N~l~~ip------~~~l~~L~~L~l~~-N~----- 244 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNIT--------KL--DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV-NP----- 244 (457)
T ss_dssp CTTCTTCCEEECCSSCCS--------CC--CCTTCTTCSEEECCSSCCSCCC------CTTCTTCSEEECCS-SC-----
T ss_pred cccCCCCCEEECcCCcCC--------ee--ccccCCCCCEEECcCCcccccC------ccccCCCCEEEeeC-Cc-----
Confidence 567888999998854422 12 4778899999999999887643 22334555554421 11
Q ss_pred ccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCC
Q 000202 1603 SWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTK 1682 (1866)
Q Consensus 1603 ~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~ 1682 (1866)
...+|... ...+..+. -...+|+.|++++|..+..++.
T Consensus 245 ----------------------l~~~~~~~--------------l~~L~~L~----l~~n~L~~L~l~~n~~~~~~~~-- 282 (457)
T 3bz5_A 245 ----------------------LTELDVST--------------LSKLTTLH----CIQTDLLEIDLTHNTQLIYFQA-- 282 (457)
T ss_dssp ----------------------CSCCCCTT--------------CTTCCEEE----CTTCCCSCCCCTTCTTCCEEEC--
T ss_pred ----------------------CCCcCHHH--------------CCCCCEEe----ccCCCCCEEECCCCccCCcccc--
Confidence 11111000 00011110 0124677778888777766652
Q ss_pred Ccccccccccccccccccccccccccc-----cccccccccccEEeEecCccCccccchhhhhhccccceeeeccc
Q 000202 1683 EHTTAVFPSLENLTLNHLWDLTCIWQG-----ILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYC 1753 (1866)
Q Consensus 1683 ~~~~~~f~~L~~L~l~~~~~L~~~~~~-----~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C 1753 (1866)
..+++|+.|+++++..+..+... .+....+++|+.|++++| +|+.+ + +.++++|+.|+++++
T Consensus 283 ----~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l-~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 283 ----EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL-D---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp ----TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC-C---CTTCTTCSEEECCSS
T ss_pred ----cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc-c---cccCCcCcEEECCCC
Confidence 34789999999988765543210 011123344444444444 34433 1 344555666665554
No 47
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.75 E-value=2.8e-19 Score=188.43 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=90.9
Q ss_pred CCCCccEEEccccccccCchHHHHHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhh-hcceEEEEeccCcccchhhH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSHLYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIE-ASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~~c~ 87 (1866)
..+.|||||||+++| ..||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.+||+ +|+++|+|+|++|+.|.||+
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 468899999999999 57999999999985 69999998 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEEecC
Q 000202 88 DELLKILECK-RNYGQIVIPVFYRVDP 113 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~v~p 113 (1866)
.|+..|+.+. ++++++||||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 4455689999998653
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=6.7e-17 Score=207.71 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=214.6
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|+++++|++|+|++|.+..+|. .++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 57899999999999775 4788999999999988 6777766667899999999999999999986 478999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+....|..+.++++|++|++++|.+..+ |..+.++++|++|++..+.- . .++...+..+++|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~-----~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL------T-----SIPTEALSHLHGLI 179 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC------S-----SCCHHHHTTCTTCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC------c-----ccChhHhcccCCCc
Confidence 999998888889999999999999999999976 55799999999999976421 1 12345678899999
Q ss_pred EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc-hHHhhccCccccCCcceeEEEEecccccccccccccc
Q 000202 1531 TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC-VAEFLKGSAWNNQQLTEFKFVVGHDVKSIVSWVTDYV 1609 (1866)
Q Consensus 1531 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 1609 (1866)
.|+++.+... ......+..+++|+.|+++.|.... ++. ......+|+.|.+
T Consensus 180 ~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l----------------- 231 (477)
T 2id5_A 180 VLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYGLNLTSLSI----------------- 231 (477)
T ss_dssp EEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCCEECT----TTTTTCCCSEEEE-----------------
T ss_pred EEeCCCCcCc-------EeChhhcccCcccceeeCCCCccccccCc----ccccCccccEEEC-----------------
Confidence 9999864432 1233467889999999998875321 111 1111123443333
Q ss_pred cccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccCCCcccccc
Q 000202 1610 QCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDTKEHTTAVF 1689 (1866)
Q Consensus 1610 ~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~f 1689 (1866)
....+..+|... +..+++|+.|+++++ .+..+... ....+
T Consensus 232 -----------~~n~l~~~~~~~-------------------------~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l 271 (477)
T 2id5_A 232 -----------THCNLTAVPYLA-------------------------VRHLVYLRFLNLSYN-PISTIEGS---MLHEL 271 (477)
T ss_dssp -----------ESSCCCSCCHHH-------------------------HTTCTTCCEEECCSS-CCCEECTT---SCTTC
T ss_pred -----------cCCcccccCHHH-------------------------hcCccccCeeECCCC-cCCccChh---hcccc
Confidence 222233444322 356788888888885 45555433 33557
Q ss_pred cccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeecccc
Q 000202 1690 PSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCL 1754 (1866)
Q Consensus 1690 ~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~ 1754 (1866)
++|+.|+++++. ++.+. ......+++|+.|++++| +++.+++ ..+..+++|++|++++++
T Consensus 272 ~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 272 LRLQEIQLVGGQ-LAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSSC-CSEEC--TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCCc-cceEC--HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 888888887642 22211 112235788999999888 7777654 456778889999998764
No 49
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.74 E-value=1.4e-19 Score=189.14 Aligned_cols=100 Identities=19% Similarity=0.334 Sum_probs=90.3
Q ss_pred CCCCccEEEccccccccCchHHH-HHHHHhhC--CCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhH
Q 000202 12 DKKMYDVFLSFRGEDTRDNFTSH-LYSALCQN--NVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCL 87 (1866)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~ 87 (1866)
..+.|||||||+++|+ .||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhCCCEEEEEEEE-ecC
Q 000202 88 DELLKILECK-RNYGQIVIPVFYR-VDP 113 (1866)
Q Consensus 88 ~El~~~~~~~-~~~~~~v~pvf~~-v~p 113 (1866)
.|+..|+.+. ++++.+||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 9999988643 5567789999986 444
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=2.5e-17 Score=216.21 Aligned_cols=397 Identities=17% Similarity=0.155 Sum_probs=236.8
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
..+.+++++|.++.+|... .++|+.|++++| .+..+++..++.+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3478999999999999533 389999999988 67788877779999999999999999977 67899999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC--c
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL--E 1530 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L--~ 1530 (1866)
|.+ ..+|.. .+++|++|++++|.++.+| ..++++++|++|++++.. + ....+..+++| +
T Consensus 110 N~l-~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l-------------~~~~~~~l~~L~L~ 172 (562)
T 3a79_B 110 NRL-QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-F-------------RQLDLLPVAHLHLS 172 (562)
T ss_dssp SCC-CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-C-------------CTTTTGGGTTSCEE
T ss_pred CcC-CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-c-------------ccCchhhhhhceee
Confidence 995 478877 8999999999999999764 789999999999997632 1 11124455555 8
Q ss_pred EeecccCCC--CCcccccc-------------------ccccccccCCCCCCEEEeecCCcc--chHHhhccCccccCCc
Q 000202 1531 TLSIDVHPG--DKRWDKDV-------------------KIVITEVSGLTKLSSLSFHFPEIE--CVAEFLKGSAWNNQQL 1587 (1866)
Q Consensus 1531 ~L~l~~~~~--~~~~~~~~-------------------~~~~~~l~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~L 1587 (1866)
.|+++.+.. ........ ......+..+++|+.|+++.|... .+...+. .....+.+
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~-~l~~l~~L 251 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTL 251 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH-HHHSCSSC
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH-HHhccCcc
Confidence 888876543 11000000 001122345667777787776421 1111111 11123445
Q ss_pred ceeEEEEecccccccccccccccccccCccceeEeecCC-CCChHHHHHH-Hhhcceecccc--cCceecCCCCccc---
Q 000202 1588 TEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGK-NVPPEVIQIL-IHSTAFYVDHH--LSIVSLSDFGVGY--- 1660 (1866)
Q Consensus 1588 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~p~~~~~~l-~~~~~l~~~~~--~~l~~L~~~~l~~--- 1660 (1866)
+.+.+....-.......+...... .....+.+...... .+|.+.+... ..+..+...+. ..+ .++...+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTT-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhc-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence 555443211100000000000000 01222333333322 3333210000 00111110000 000 111000000
Q ss_pred ccCCcEEEecccCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccc-hhhh
Q 000202 1661 MSGLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFT-CSMI 1739 (1866)
Q Consensus 1661 l~~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~-~~~l 1739 (1866)
.++|+.|.+++|.-. .+. ....+++|+.|+++++. ++... ....+.+++|+.|++++| +++.++. ...+
T Consensus 330 ~~~L~~L~l~~n~~~-~~~-----~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 399 (562)
T 3a79_B 330 EMNIKMLSISDTPFI-HMV-----CPPSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMT 399 (562)
T ss_dssp TCCCSEEEEESSCCC-CCC-----CCSSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTT
T ss_pred cCcceEEEccCCCcc-ccc-----CccCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCC-CcCCcccchhhh
Confidence 145888888876432 211 11457899999998753 22211 111246899999999998 7777643 2346
Q ss_pred hhccccceeeeccccccce-ecccCccccccccCCCCcCEEeccCCccccccccCCC-CCccEEEEEcCccccccC
Q 000202 1740 QFLAKLEELTVEYCLAVKS-IILDGEITYSSCIMLPSLKKLRLHHLPELANIWRNDW-PSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1740 ~~L~sLe~L~I~~C~~L~~-l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i~~~~l-psLe~L~I~~Cp~L~~lp 1813 (1866)
.++++|++|++++|. +.. ++. ..+..+++|+.|+|+++. +.......+ ++|++|++++| +++.+|
T Consensus 400 ~~l~~L~~L~l~~N~-l~~~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~~ip 466 (562)
T 3a79_B 400 KNMSSLETLDVSLNS-LNSHAYD------RTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIMSIP 466 (562)
T ss_dssp TTCTTCCEEECTTSC-CBSCCSS------CCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCCCCC
T ss_pred cCCCCCCEEECCCCc-CCCccCh------hhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCcccC
Confidence 789999999999985 433 432 124578999999999987 433222334 79999999998 676665
No 51
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=183.33 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=89.7
Q ss_pred CCccEEEccccccc---------cCchHHHHHH-HHh-hCCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcc
Q 000202 14 KMYDVFLSFRGEDT---------RDNFTSHLYS-ALC-QNNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYA 81 (1866)
Q Consensus 14 ~~~dvFis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 81 (1866)
+.|||||||+++|+ ++.||.|+.. .|+ +.|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679999776 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHHH-hhCCCEEEEEEEEecC
Q 000202 82 -SSKWCLDELLKILECK-RNYGQIVIPVFYRVDP 113 (1866)
Q Consensus 82 -~s~~c~~El~~~~~~~-~~~~~~v~pvf~~v~p 113 (1866)
.|.||..|+..|+.+. ++++.+||||||.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999987 6678899999976443
No 52
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.73 E-value=4.9e-19 Score=189.40 Aligned_cols=99 Identities=18% Similarity=0.355 Sum_probs=86.0
Q ss_pred CCCCCCccEEEccccccccCchHHH-HHHHHhh--CCCceEeeC-CCCCCCCCchhHHHHhhhcceEEEEeccCcccchh
Q 000202 10 RNDKKMYDVFLSFRGEDTRDNFTSH-LYSALCQ--NNVETFIDN-DLKRGDEIPESLLGTIEASTISIIIFSEKYASSKW 85 (1866)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~ 85 (1866)
....+.|||||||+++|+ .||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++||++|+|+|+||+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 346689999999999994 79975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-hhCCCEEEEEEEE
Q 000202 86 CLDELLKILECK-RNYGQIVIPVFYR 110 (1866)
Q Consensus 86 c~~El~~~~~~~-~~~~~~v~pvf~~ 110 (1866)
|+.|+..|+.+. ++++++||||||+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999999654 5567789999986
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=4e-16 Score=199.29 Aligned_cols=344 Identities=16% Similarity=0.163 Sum_probs=228.7
Q ss_pred CCCccccccCcEEEccCCCCC-CCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChh--h
Q 000202 1368 PPSEEEWTHAKMIFFMDNDLQ-TLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPET--L 1441 (1866)
Q Consensus 1368 ~~~~~~~~~l~~l~l~~~~l~-~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~--i 1441 (1866)
+..+..+++|+.|++++|.+. .++ .+..+++|++|+|++| .+..+++..++.+++|++|+|++|.++. .|.. +
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 345778999999999999886 454 3678999999999988 4566655556889999999999999985 4554 8
Q ss_pred cCCCCCcEEecccccCcccCCcc-ccCCCCCcEEEccCCCCCcC-ChhhcCC--CccceeccccccccCCCccccCCCCC
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPE-VGSLECLEVLDLRGTEIKML-PKEIGKL--TSLRYLTVFFFGSMYKSEYIKLPPDL 1517 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~l-p~~i~~L--~~L~~L~l~~~~~~~~~~~~~l~~~~ 1517 (1866)
+++++|++|+|++|.+.+..|.. ++++++|++|++++|.+..+ |..++++ .+|+.|++..+.- ..++...
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l------~~~~~~~ 199 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------QDMNEYW 199 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC------TTCSTTC
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc------cccchhh
Confidence 99999999999999988777876 89999999999999999866 5556666 6788888765431 2222221
Q ss_pred CChh---hhhccccCcEeecccCCCCCccccccccccccc---cCCCCCCEEEeecCCccchHHhhccCccccCCcceeE
Q 000202 1518 ISSD---ILSRLQALETLSIDVHPGDKRWDKDVKIVITEV---SGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFK 1591 (1866)
Q Consensus 1518 ~~~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~ 1591 (1866)
+... .+..+++|+.|+++.+.... ..+..+ ...++|+.|+++.+...... .....+....
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~~ 265 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKE-------SMAKRFFDAIAGTKIQSLILSNSYNMGSS-------FGHTNFKDPD 265 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCH-------HHHHHHHHHTTTCCEEEEECTTCTTTSCC-------TTCCSSCCCC
T ss_pred ccccccccccccceeeeEecCCCcccc-------cchhhhhccccccceeeEeeccccccccc-------cchhhhccCc
Confidence 1111 13456789999998654321 122222 23478999999877543210 0000010000
Q ss_pred EEEecccccccccccccccccccCccceeEeecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecc
Q 000202 1592 FVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISE 1671 (1866)
Q Consensus 1592 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~ 1671 (1866)
...+.. .....++.+ .+. ...+..+....++.+++|+.|++++
T Consensus 266 ------~~~~~~-----------~~~~~L~~L-------------------~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 266 ------NFTFKG-----------LEASGVKTC-------------------DLS-KSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp ------TTTTGG-----------GTTSCCCEE-------------------ECC-SSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ------cccccc-----------ccccCceEE-------------------Eec-CccccccchhhcccCCCCCEEECCC
Confidence 000000 000111111 111 1123333333467899999999998
Q ss_pred cCCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEecCccCccccchhhhhhccccceeeec
Q 000202 1672 CLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVE 1751 (1866)
Q Consensus 1672 c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~ 1751 (1866)
| .+..+... ....+++|+.|+++++. ++.+. ....+.+++|+.|++++| +++.+++ ..+.++++|++|+++
T Consensus 309 n-~l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 309 N-EINKIDDN---AFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALD 379 (455)
T ss_dssp S-CCCEECTT---TTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred C-cccccChh---HhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECC
Confidence 5 45555432 33568999999998762 33211 111246899999999999 6777644 467789999999999
Q ss_pred cccccceecccCccccccccCCCCcCEEeccCCc
Q 000202 1752 YCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLP 1785 (1866)
Q Consensus 1752 ~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~ 1785 (1866)
+| .++.++.. .+..+++|+.|+|++++
T Consensus 380 ~N-~l~~~~~~------~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 380 TN-QLKSVPDG------IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SS-CCSCCCTT------TTTTCTTCCEEECCSSC
T ss_pred CC-ccccCCHh------HhccCCcccEEEccCCC
Confidence 97 56666522 24578999999999887
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=1.1e-15 Score=185.90 Aligned_cols=121 Identities=23% Similarity=0.311 Sum_probs=82.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
+++.++++++.+..+|... .++++.|++++| .+..+++..++.+++|++|+|++|.+..+ |..++.+++|++|+|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5677777777777776422 256777777766 46666665557777777777777777765 66777777777777777
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|.+ ..+|..+. ++|++|++++|.++.+|.. ++++++|++|++..
T Consensus 110 n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 110 NQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp SCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 763 45666554 6777777777777766543 66777777776654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=9.4e-16 Score=205.05 Aligned_cols=148 Identities=24% Similarity=0.259 Sum_probs=120.0
Q ss_pred cEEEccCCCCCCCCCCCCC-CcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSC-PNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~-~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 1455 (1866)
.+.+.++..+..+|. .+ +++++|+|++| .+..+|+..|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++|
T Consensus 34 ~~~~c~~~~l~~vP~--~lp~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPD--NLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCS--SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCC--CCCcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 456677778888884 23 47999999998 6889998888999999999999999999875 6899999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
++.+..|..|++|++|++|++++|.++.+|.. +++|++|++|+++++.- .... .+..+..+++|+.|++
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l----~~~~------~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI----QSFK------LPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC----CCCC------CCGGGGGCTTCCEEEC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc----ccCC------Cchhhccchhhhhhcc
Confidence 96554456789999999999999999999865 89999999999976421 1011 1234677888999988
Q ss_pred ccCC
Q 000202 1535 DVHP 1538 (1866)
Q Consensus 1535 ~~~~ 1538 (1866)
+.+.
T Consensus 181 ~~N~ 184 (635)
T 4g8a_A 181 SSNK 184 (635)
T ss_dssp CSSC
T ss_pred cCcc
Confidence 8654
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=7e-16 Score=187.85 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=54.5
Q ss_pred ccccccEEeEecCccCccccchhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccc-ccc--
Q 000202 1715 SFAELRILSIHACRHLEYVFTCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELA-NIW-- 1791 (1866)
Q Consensus 1715 ~~p~L~~L~I~~C~~L~~l~~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~-~i~-- 1791 (1866)
.+++|+.|++++| +++.+|. .+..+++|++|++++| .++.++...-........+++|+.|++.++|-.. .+.
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred CCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 4678888888888 6776644 4677888999999887 4666543221110111236788999998887331 221
Q ss_pred -cCCCCCccEEEEEcCc
Q 000202 1792 -RNDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1792 -~~~lpsLe~L~I~~Cp 1807 (1866)
...+++|+.|++++|.
T Consensus 315 ~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGTTBCCSTTEEC----
T ss_pred cccccchhhhhhccccc
Confidence 1356788888887774
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=3.8e-16 Score=189.16 Aligned_cols=175 Identities=23% Similarity=0.293 Sum_probs=145.2
Q ss_pred cccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1374 WTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
..+++.|++.+|.+..+|. +..+++|++|+|++| .+..+|..+ +.+++|++|+|++|.+..+|..++++++|++|+|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 4678999999999999985 677999999999988 455888776 7899999999999999999999999999999999
Q ss_pred ccccCcccCCccccC---------CCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1453 RDCDFLFVLPPEVGS---------LECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~---------L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
++|..++.+|..++. +++|++|++++|.++.+|..++++++|++|+++++.- ..++. .+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l------~~l~~------~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL------SALGP------AI 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC------CCCCG------GG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC------CcCch------hh
Confidence 999999999988765 9999999999999999999999999999999976421 12221 36
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
..+++|+.|+++.|... ..++..+..+++|+.|+++.|.
T Consensus 226 ~~l~~L~~L~Ls~n~~~-------~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTAL-------RNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp GGCTTCCEEECTTCTTC-------CBCCCCTTCCCCCCEEECTTCT
T ss_pred ccCCCCCEEECcCCcch-------hhhHHHhcCCCCCCEEECCCCC
Confidence 77888888888854332 2355667778888888877654
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=3.2e-16 Score=198.29 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=81.7
Q ss_pred CccccccCcEEEccCCCCC-CCCC-CCCCCc-------------ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQ-TLPG-RPSCPN-------------LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRI 1434 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~-~l~~-~~~~~~-------------L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i 1434 (1866)
.+..+++|+.|++++|.+. .+|. +..+++ ++.|++++| .+..+|. ..++|++|++++|.+
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~----~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE----LPPHLESLVASCNSL 103 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS----CCTTCSEEECCSSCC
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC----CcCCCCEEEccCCcC
Confidence 3444555555555555443 3332 233333 255555544 3444443 124566666666665
Q ss_pred CCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCC
Q 000202 1435 KSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLP 1514 (1866)
Q Consensus 1435 ~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~ 1514 (1866)
+.+|.. +.+|++|++++|.+. .+|.. .++|++|++++|.++.+| .++++++|++|+++++. ...+|
T Consensus 104 ~~lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~------l~~lp 169 (454)
T 1jl5_A 104 TELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS------LKKLP 169 (454)
T ss_dssp SSCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC------CSCCC
T ss_pred Cccccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc------CcccC
Confidence 555532 255666666666532 23321 146666666666666666 46666666666665431 11122
Q ss_pred CCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1515 PDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1515 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
. ...+|+.|+++.+.. ..++ .+..+++|+.|+++.|.+..
T Consensus 170 ~---------~~~~L~~L~L~~n~l--------~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 170 D---------LPPSLEFIAAGNNQL--------EELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp C---------CCTTCCEEECCSSCC--------SSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred C---------CcccccEEECcCCcC--------CcCc-cccCCCCCCEEECCCCcCCc
Confidence 1 123566666664321 1122 45666677777776666554
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=4.9e-16 Score=188.20 Aligned_cols=135 Identities=22% Similarity=0.348 Sum_probs=73.9
Q ss_pred CCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccc
Q 000202 1421 MTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1421 l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 1500 (1866)
..++++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35566666666666666666666666666666666644 56666666666666666666666666666666666666665
Q ss_pred cccccCCCccccCCCCCC---ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1501 FFGSMYKSEYIKLPPDLI---SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1501 ~~~~~~~~~~~~l~~~~~---~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
+|..... +|.... ....+.++++|+.|+++.+. ...++..+..+++|+.|+++.|.
T Consensus 159 ~n~~~~~-----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--------l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 159 ACPELTE-----LPEPLASTDASGEHQGLVNLQSLRLEWTG--------IRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EETTCCC-----CCSCSEEEC-CCCEEESTTCCEEEEEEEC--------CCCCCGGGGGCTTCCEEEEESSC
T ss_pred CCCCccc-----cChhHhhccchhhhccCCCCCEEECcCCC--------cCcchHhhcCCCCCCEEEccCCC
Confidence 5432211 111000 00113345566666655322 11244455566666666665554
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=2.1e-15 Score=190.79 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=123.6
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|.. +++|+.|++++| .+..+|.. .++|++|++++|.++.+| +++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 5789999999999888853 478999999887 55555531 268999999999999888 599999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+. .+|..+ .+|++|++++|.++.+| .++++++|++|++.++. ...+|. ..++|+.|++
T Consensus 163 N~l~-~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~------l~~l~~---------~~~~L~~L~l 222 (454)
T 1jl5_A 163 NSLK-KLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS------LKKLPD---------LPLSLESIVA 222 (454)
T ss_dssp SCCS-CCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC------CSSCCC---------CCTTCCEEEC
T ss_pred CcCc-ccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc------CCcCCC---------CcCcccEEEC
Confidence 9854 477543 58999999999999888 68999999999886542 112222 1247888888
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+.+.. ..++ .+..+++|+.|+++.|.+..++
T Consensus 223 ~~n~l--------~~lp-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 223 GNNIL--------EELP-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSCC--------SSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred cCCcC--------Cccc-ccCCCCCCCEEECCCCcCCccc
Confidence 75432 2233 4778899999999988876543
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=1.5e-15 Score=184.82 Aligned_cols=122 Identities=21% Similarity=0.324 Sum_probs=94.5
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~ 1454 (1866)
+++.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|+|++|.++.+ |..++++++|++|+|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5778888888888887432 367888888877 56677666668888888888888888866 67788888888888888
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 1502 (1866)
|.+ ..+|..+. ++|++|++++|.++.+|.. ++++++|++|++.++
T Consensus 112 n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 112 NHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred CcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 874 46776665 7888888888888887654 788888888887653
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=187.84 Aligned_cols=179 Identities=22% Similarity=0.245 Sum_probs=131.2
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~ 1454 (1866)
.....+++++.+..+|.. -.++|+.|++++| .+..+|...+..+++|++|+|++|.++.++ ..++++++|++|+|++
T Consensus 32 ~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 334577788888888852 2358999999887 577788766788999999999999988764 5688999999999999
Q ss_pred ccCcccCCcc-ccCCCCCcEEEccCCCCCcCCh--hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1455 CDFLFVLPPE-VGSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1455 ~~~~~~lP~~-i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
|.+. .+|.. ++++++|++|++++|.++.+|. .++++++|++|++.++..... + ....+.++++|+.
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-----~-----~~~~~~~l~~L~~ 178 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-----I-----QRKDFAGLTFLEE 178 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-----E-----CTTTTTTCCEEEE
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-----c-----CHHHccCCCCCCE
Confidence 9865 45544 8889999999999999998887 688899999998876432211 1 1123567788888
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
|+++.+... ...+..+..+++|+.|+++.|.+..++
T Consensus 179 L~l~~n~l~-------~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 179 LEIDASDLQ-------SYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EEEEETTCC-------EECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred EECCCCCcC-------ccCHHHHhccccCCeecCCCCccccch
Confidence 888754322 123556677788888888777655443
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=4.8e-15 Score=192.97 Aligned_cols=155 Identities=23% Similarity=0.183 Sum_probs=118.1
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+++.+++++|.+..+|.... ++|+.|+|++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|+|++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 57889999999999886333 79999999988 5778886 47899999999999999987 7899999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
.+ ..+|. .+.+|++|++++|.++.+|.. +++|++|+++++. +..++. .+.+|+.|+++
T Consensus 112 ~l-~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~------l~~l~~---------~~~~L~~L~L~ 169 (622)
T 3g06_A 112 PL-THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ------LASLPA---------LPSELCKLWAY 169 (622)
T ss_dssp CC-CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC------CSCCCC---------CCTTCCEEECC
T ss_pred cC-CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc------CCCcCC---------ccCCCCEEECC
Confidence 84 45676 678899999999999999875 4889999887642 112221 24577888877
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+.. ..++ ..+++|+.|+++.|.+..
T Consensus 170 ~N~l--------~~l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 170 NNQL--------TSLP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp SSCC--------SCCC---CCCTTCCEEECCSSCCSC
T ss_pred CCCC--------CCCc---ccCCCCcEEECCCCCCCC
Confidence 4332 2223 446788888888877654
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=1.8e-14 Score=175.27 Aligned_cols=174 Identities=24% Similarity=0.347 Sum_probs=136.6
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
+.++.|++++|.+..++. +..+++|++|++++| .+..+++..++.+++|++|+|++|.++.+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 578999999999998874 778999999999988 5666655556889999999999999999998775 79999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCC---cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIK---MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
++|.+....|..++++++|++|++++|.+. ..|..+.++++|++|++.++. ...+|.. -.++|
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------l~~l~~~--------~~~~L 194 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN------ITTIPQG--------LPPSL 194 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC------CCSCCSS--------CCTTC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc------cccCCcc--------ccccC
Confidence 999987776778999999999999999987 346678999999999986542 1223321 12678
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 195 ~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 195 TELHLDGNKIT-------KVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SEEECTTSCCC-------EECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CEEECCCCcCC-------ccCHHHhcCCCCCCEEECCCCcCce
Confidence 88888754322 1234567788888888888776543
No 65
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=4e-15 Score=179.07 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=61.5
Q ss_pred cccEEEccCCcCCc--ccChhHHhcCCCCcEEEccC-CCCC-CCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1398 NLLTLFLQRNCRLR--VIPPSFFELMTSLKVLNLSK-TRIK-SLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~--~~p~~~~~~l~~L~~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
+++.|+|++|.... .+|..+ +.+++|++|+|++ |.+. .+|..++++++|++|+|++|.+.+.+|..++++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45556666553333 455443 5566666666663 5554 55666666666666666666655566666666666666
Q ss_pred EEccCCCCC-cCChhhcCCCccceecccc
Q 000202 1474 LDLRGTEIK-MLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~-~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|++++|.++ .+|..++++++|++|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 666666665 4566666666666665543
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=3.9e-16 Score=206.69 Aligned_cols=385 Identities=14% Similarity=0.027 Sum_probs=228.2
Q ss_pred ccccCcEEEccCCCCCCC--CCCCC-CCc-ccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCC-----CChhhc
Q 000202 1373 EWTHAKMIFFMDNDLQTL--PGRPS-CPN-LLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKS-----LPETLV 1442 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l--~~~~~-~~~-L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~ 1442 (1866)
.+++|+.|++++|.+... ..+.. +++ |+.|+|++|..+... ...+...+++|++|+|++|.+.. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 567899999999876521 12222 444 999999988532211 12234578999999999998652 445567
Q ss_pred CCCCCcEEecccccCc----ccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCC
Q 000202 1443 NLKCLQILILRDCDFL----FVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLI 1518 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~----~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~ 1518 (1866)
.+++|++|+|++|.+. ..++..+.++++|++|++++|.+..+|..++++++|++|.+..+...... ...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~----- 262 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM--PEK----- 262 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC--TTS-----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch--HHH-----
Confidence 8899999999999865 34566677899999999999999999999999999999998753221100 000
Q ss_pred ChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccc
Q 000202 1519 SSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDV 1598 (1866)
Q Consensus 1519 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 1598 (1866)
...+..+++|+.|++.... ...++..+..+++|++|++++|.+.... +.......++|+.|.+......
T Consensus 263 -~~~l~~~~~L~~L~l~~~~--------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~--~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 263 -YMNLVFPRKLCRLGLSYMG--------PNEMPILFPFAAQIRKLDLLYALLETED--HCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp -SSCCCCCTTCCEEEETTCC--------TTTGGGGGGGGGGCCEEEETTCCCCHHH--HHHHHTTCTTCCEEEEEGGGHH
T ss_pred -HHHhhccccccccCccccc--------hhHHHHHHhhcCCCcEEecCCCcCCHHH--HHHHHHhCcCCCEEeccCccCH
Confidence 1125567788888876421 1224555677888999999888754322 1111123567777776511100
Q ss_pred ccccccccccccccccCccceeEeec----------CCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEE
Q 000202 1599 KSIVSWVTDYVQCDYNQHDRCLRFVN----------GKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCI 1668 (1866)
Q Consensus 1599 ~~~~~~~~~~~~~~~~~~~~~L~~~~----------~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~ 1668 (1866)
..+.. .... ......|...+ ...+....+..+ ...+++|++|.
T Consensus 332 ~~l~~----~~~~--~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---------------------~~~~~~L~~L~ 384 (592)
T 3ogk_B 332 RGLEV----LAQY--CKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---------------------AQGCQELEYMA 384 (592)
T ss_dssp HHHHH----HHHH--CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH---------------------HHHCTTCSEEE
T ss_pred HHHHH----HHHh--CCCCCEEEeecCccccccccccCccCHHHHHHH---------------------HhhCccCeEEE
Confidence 00000 0000 00111111111 112222111111 23477888888
Q ss_pred ecccCCccEeccCCCccccccccccccccccc---ccccccccc-cc--cccccccccEEeEecCcc-Cccccchhhhhh
Q 000202 1669 ISECLKIKTVVDTKEHTTAVFPSLENLTLNHL---WDLTCIWQG-IL--PEGSFAELRILSIHACRH-LEYVFTCSMIQF 1741 (1866)
Q Consensus 1669 l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~---~~L~~~~~~-~~--~~~~~p~L~~L~I~~C~~-L~~l~~~~~l~~ 1741 (1866)
+ .|+.+...... .....+++|+.|.+.+| +.++..... .+ -...+++|+.|+++.|.. ++.........+
T Consensus 385 l-~~~~l~~~~~~--~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 385 V-YVSDITNESLE--SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp E-EESCCCHHHHH--HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred e-ecCCccHHHHH--HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 8 55665432211 01224778888888743 344321000 00 012478899999988864 444323233445
Q ss_pred ccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcCccccccC
Q 000202 1742 LAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGCPKLKKMG 1813 (1866)
Q Consensus 1742 L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~Cp~L~~lp 1813 (1866)
+++|++|+|++|. +.... .......+++|+.|+|++|+ +..- ....+|+|++|++++|+ ++.-+
T Consensus 462 ~~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEG-----LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp CTTCCEEEECSCC-SSHHH-----HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred CccceEeeccCCC-CCHHH-----HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 8889999998874 32110 00112467899999999998 4321 11367999999999998 65443
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=2.2e-14 Score=181.80 Aligned_cols=174 Identities=21% Similarity=0.288 Sum_probs=128.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
...++..++.+..+|... .++++.|+|++| .+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 456778888888888532 368899999987 577777777788999999999999998776 67889999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....+..+.++++|++|++++|.++.+|. .+.++++|++|++..+..+.. + +...+.++++|+.|++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i-----~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-----I-----SEGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----E-----CTTTTTTCSSCCEEEC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-----e-----CcchhhcccccCeecC
Confidence 8665545578899999999999999998875 588899999998865433221 1 1223566777888877
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .+ ..+..+++|+.|+++.|.+.
T Consensus 193 ~~n~l~--------~~-~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 193 AMCNLR--------EI-PNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp TTSCCS--------SC-CCCTTCSSCCEEECTTSCCC
T ss_pred CCCcCc--------cc-cccCCCcccCEEECCCCccC
Confidence 754322 12 34666777777777766543
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=2.1e-14 Score=182.70 Aligned_cols=174 Identities=20% Similarity=0.221 Sum_probs=130.8
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
...++..++.+..+|... .++++.|+|++| .+..+++..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 456778888888888422 368999999988 577777666788999999999999998776 67899999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....|..++++++|++|++++|.++.+|. .+.++++|++|++..+..+.. + +...+.++++|+.|++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----i-----~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-----I-----SEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-----E-----CTTTTTTCTTCCEEEC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc-----c-----ChhhccCCCCCCEEEC
Confidence 8665555568899999999999999998876 588999999999876543321 1 1223567778888888
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .+ ..+..+++|+.|+++.|.+.
T Consensus 204 ~~n~l~--------~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 204 GMCNIK--------DM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp TTSCCS--------SC-CCCTTCTTCCEEECTTSCCS
T ss_pred CCCccc--------cc-ccccccccccEEECcCCcCc
Confidence 754322 12 34667777777777776543
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=7.8e-15 Score=176.57 Aligned_cols=177 Identities=19% Similarity=0.259 Sum_probs=144.0
Q ss_pred ccCcEEEccCCCCCC---CC-CCCCCCcccEEEccC-CcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCc
Q 000202 1375 THAKMIFFMDNDLQT---LP-GRPSCPNLLTLFLQR-NCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQ 1448 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~---l~-~~~~~~~L~~L~L~~-~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~ 1448 (1866)
.+++.|++.+|.+.. +| .+..+++|++|++++ |.....+|..+ +.+++|++|+|++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467889999999984 66 467899999999995 65555677765 88999999999999998 8899999999999
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCCCC-cCChhhcCCC-ccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLT-SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
+|+|++|.+.+.+|..++++++|++|++++|.++ .+|..+++++ +|++|+++++.-. ..+| ..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----~~~~------~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-----GKIP------PTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----EECC------GGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----ccCC------hHHhCC
Confidence 9999999988899999999999999999999998 8899999998 9999998764211 0111 235566
Q ss_pred ccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1527 QALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1527 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+ |+.|+++.+.. ....+..+..+++|+.|+++.|.+.
T Consensus 198 ~-L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 198 N-LAFVDLSRNML-------EGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp C-CSEEECCSSEE-------EECCGGGCCTTSCCSEEECCSSEEC
T ss_pred c-ccEEECcCCcc-------cCcCCHHHhcCCCCCEEECCCCcee
Confidence 6 99999885431 1235567788999999999887754
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=177.49 Aligned_cols=159 Identities=26% Similarity=0.300 Sum_probs=123.3
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCccccCCCCCc
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLE 1472 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 1472 (1866)
..|+.....+++++ .+..+|..+ .++|++|+|++|.++.+|. .+.++++|++|+|++|.+.+..|..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~-~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSG-SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCST-TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCC-Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 45666667888766 788899866 3689999999999998886 899999999999999998777788899999999
Q ss_pred EEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCcccccccccc
Q 000202 1473 VLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVI 1551 (1866)
Q Consensus 1473 ~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 1551 (1866)
+|++++|.++.+|.. ++++++|++|+++++. ...++. ...+..+++|+.|+++.+... .....
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~----~~~~~~l~~L~~L~l~~n~~~------~~~~~ 167 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP------YKTLGE----TSLFSHLTKLQILRVGNMDTF------TKIQR 167 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC------CSSSCS----SCSCTTCTTCCEEEEEESSSC------CEECT
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC------CcccCc----hhhhccCCCCcEEECCCCccc------cccCH
Confidence 999999999999877 8999999999997542 112221 023667888999988854211 11223
Q ss_pred ccccCCCCCCEEEeecCCccc
Q 000202 1552 TEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1552 ~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
..+..+++|+.|+++.|.+..
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCE
T ss_pred HHccCCCCCCEEECCCCCcCc
Confidence 456778888888888776543
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=1.3e-13 Score=179.44 Aligned_cols=154 Identities=23% Similarity=0.225 Sum_probs=121.2
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++++.|++++|.+..+|. .+++|++|+|++| .+..+|. .+++|++|+|++|.++.+|. .+.+|++|+|++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCC
Confidence 789999999999999987 6899999999988 5778886 57999999999999999988 678999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+ ..+|.. +++|++|++++|.++.+|.. +.+|+.|+++++. +..++ ..+++|+.|++
T Consensus 131 N~l-~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~------l~~l~---------~~~~~L~~L~L 188 (622)
T 3g06_A 131 NQL-TSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ------LTSLP---------MLPSGLQELSV 188 (622)
T ss_dssp SCC-SCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC------CSCCC---------CCCTTCCEEEC
T ss_pred CCC-CcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC------CCCCc---------ccCCCCcEEEC
Confidence 984 557764 58999999999999999864 4678888876532 12222 24688999999
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+.+... .++. .+++|+.|+++.|.+.
T Consensus 189 s~N~l~--------~l~~---~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 189 SDNQLA--------SLPT---LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CSSCCS--------CCCC---CCTTCCEEECCSSCCS
T ss_pred CCCCCC--------CCCC---ccchhhEEECcCCccc
Confidence 854322 1222 2468888888777654
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.54 E-value=7.2e-14 Score=167.92 Aligned_cols=174 Identities=21% Similarity=0.251 Sum_probs=125.1
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC---ChhhcCCCCCcEEeccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL---PETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~ 1454 (1866)
+.+++.++.+..+|.. -.++|+.|++++| .+..+|..+|+.+++|++|+|++|.+..+ |..+..+.+|++|+|++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4577777788888742 2368888888877 57788888778888899999998888755 67777888899999988
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCCh--hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEe
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETL 1532 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L 1532 (1866)
|.+ ..+|..+.++++|++|++++|.++.+|. .+.++++|++|+++++.- ... ....+..+++|+.|
T Consensus 88 n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~~~-----~~~~~~~l~~L~~L 155 (306)
T 2z66_A 88 NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT------RVA-----FNGIFNGLSSLEVL 155 (306)
T ss_dssp CSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC------EEC-----STTTTTTCTTCCEE
T ss_pred Ccc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC------Ccc-----chhhcccCcCCCEE
Confidence 874 4677788888899999999888887764 688888888888865421 111 11235667788888
Q ss_pred ecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1533 SIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1533 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+++.+.... ...+..+..+++|+.|+++.|.+.
T Consensus 156 ~l~~n~l~~------~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 156 KMAGNSFQE------NFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ECTTCEEGG------GEECSCCTTCTTCCEEECTTSCCC
T ss_pred ECCCCcccc------ccchhHHhhCcCCCEEECCCCCcC
Confidence 877432110 124556677788888888776644
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=2.6e-13 Score=171.95 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=146.3
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 67899999999999776 5788999999999988 6778888888999999999999999999985 689999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCC-CCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGT-EIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|++|.+....+..+.++++|++|++++| .+..+|. .+.++++|++|+++++. +..+|. +..+++|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN------LREIPN-------LTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC------CSSCCC-------CTTCSSC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc------Cccccc-------cCCCccc
Confidence 9999977666668999999999999995 6777766 58999999999997642 123332 6788999
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 210 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 210 DELDLSGNHLS-------AIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CEEECCCCccC-------ccChhhhccCccCCEEECCCCceeE
Confidence 99999865322 2235678899999999998877543
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=1e-14 Score=193.14 Aligned_cols=382 Identities=14% Similarity=0.051 Sum_probs=180.3
Q ss_pred cccCcEEEccCCCCCCC--CCCC-CCCcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCC-----CChhhcCC
Q 000202 1374 WTHAKMIFFMDNDLQTL--PGRP-SCPNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKS-----LPETLVNL 1444 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l--~~~~-~~~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~-----lp~~i~~L 1444 (1866)
+++|+.|+++++.+... ..+. .+++|+.|+|++|..+... ...++..+++|++|+|++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 44566666665554321 1111 3556666666655333221 12233455666666666665432 22222344
Q ss_pred CCCcEEeccccc--Cc-ccCCccccCCCCCcEEEccCC-CCCcCChhhcCCCccceeccccccc-cCCCccccCCCCCCC
Q 000202 1445 KCLQILILRDCD--FL-FVLPPEVGSLECLEVLDLRGT-EIKMLPKEIGKLTSLRYLTVFFFGS-MYKSEYIKLPPDLIS 1519 (1866)
Q Consensus 1445 ~~L~~L~L~~~~--~~-~~lP~~i~~L~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~-~~~~~~~~l~~~~~~ 1519 (1866)
++|++|+|++|. +. ..++..+.++++|++|++++| .+..+|..+.++++|++|.+..+.. ........+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l------ 257 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL------ 257 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH------
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH------
Confidence 566666666554 00 011111233466666666665 3444555556666666665543321 000000000
Q ss_pred hhhhhccccCcEee-cccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEEEeccc
Q 000202 1520 SDILSRLQALETLS-IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFVVGHDV 1598 (1866)
Q Consensus 1520 ~~~l~~L~~L~~L~-l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 1598 (1866)
...+.++++|+.|. +.. .....+...+..+++|++|++++|.+.... +.......++|+.|.+......
T Consensus 258 ~~~l~~~~~L~~Ls~~~~--------~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--l~~~~~~~~~L~~L~l~~~~~~ 327 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWD--------AVPAYLPAVYSVCSRLTTLNLSYATVQSYD--LVKLLCQCPKLQRLWVLDYIED 327 (594)
T ss_dssp HHHHHTCTTCCEEECCBT--------CCGGGGGGGHHHHTTCCEEECTTCCCCHHH--HHHHHTTCTTCCEEEEEGGGHH
T ss_pred HHHHhcCCCcccccCCcc--------cchhhHHHHHHhhCCCCEEEccCCCCCHHH--HHHHHhcCCCcCEEeCcCccCH
Confidence 01245556666552 221 111123333346677888888777754311 1111123456666666422000
Q ss_pred ccccccccccccccccCccceeEe------ecCCCCChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEeccc
Q 000202 1599 KSIVSWVTDYVQCDYNQHDRCLRF------VNGKNVPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISEC 1672 (1866)
Q Consensus 1599 ~~~~~~~~~~~~~~~~~~~~~L~~------~~~~~~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c 1672 (1866)
..+.. ..........+.+.. .....+....+..+ ...+++|+.|. .+|
T Consensus 328 ~~l~~----l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l---------------------~~~~~~L~~L~-~~~ 381 (594)
T 2p1m_B 328 AGLEV----LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV---------------------SMGCPKLESVL-YFC 381 (594)
T ss_dssp HHHHH----HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH---------------------HHHCTTCCEEE-EEE
T ss_pred HHHHH----HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH---------------------HHhchhHHHHH-Hhc
Confidence 00000 000000001111100 01111221111111 12367888884 456
Q ss_pred CCccEeccCCCccccccccccccccc-----cccccccccc-cccc--ccccccccEEeEecCccCccccchhhhhhccc
Q 000202 1673 LKIKTVVDTKEHTTAVFPSLENLTLN-----HLWDLTCIWQ-GILP--EGSFAELRILSIHACRHLEYVFTCSMIQFLAK 1744 (1866)
Q Consensus 1673 ~~l~~i~~~~~~~~~~f~~L~~L~l~-----~~~~L~~~~~-~~~~--~~~~p~L~~L~I~~C~~L~~l~~~~~l~~L~s 1744 (1866)
+.+...... .....+++|+.|++. +|.+++.... ..++ ...+++|+.|++++ +++..........+++
T Consensus 382 ~~l~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 382 RQMTNAALI--TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp SCCCHHHHH--HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred CCcCHHHHH--HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence 666543211 112347889999888 4555542110 0000 23578899999865 5555433233344888
Q ss_pred cceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcCcc
Q 000202 1745 LEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGCPK 1808 (1866)
Q Consensus 1745 Le~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~Cp~ 1808 (1866)
|+.|+|++|. +.... . ..-...+|+|+.|+|++|+. ... ....+++|++|++++|+.
T Consensus 458 L~~L~L~~~~-i~~~~----~-~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 458 MEMLSVAFAG-DSDLG----M-HHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCC-SSHHH----H-HHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccEeeccCCC-CcHHH----H-HHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999998885 31110 0 00013589999999999985 221 123579999999999976
No 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=2.9e-13 Score=172.19 Aligned_cols=177 Identities=23% Similarity=0.295 Sum_probs=144.9
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57899999999999774 4778999999999988 67778877779999999999999999988854 88999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccC-CCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRG-TEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|++|.+....+..+.++++|++|++++ +.+..+|. .+.++++|++|+++++. +..++. +..+++|
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~-------~~~l~~L 220 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN------IKDMPN-------LTPLVGL 220 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC------CSSCCC-------CTTCTTC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc------cccccc-------ccccccc
Confidence 999997665566899999999999999 47777876 48999999999997642 122222 6688999
Q ss_pred cEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+.|+++.+... ...+..+..+++|+.|+++.|.+..
T Consensus 221 ~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 221 EELEMSGNHFP-------EIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CEEECTTSCCS-------EECGGGGTTCTTCCEEECTTSCCCE
T ss_pred cEEECcCCcCc-------ccCcccccCccCCCEEEeCCCcCce
Confidence 99999865422 2345678899999999998877543
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.50 E-value=1.8e-13 Score=162.65 Aligned_cols=172 Identities=24% Similarity=0.286 Sum_probs=108.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++.++.+..+|. ...++|+.|++++| .+..+++..+..+++|++|+|++|.+..+ |..+..+++|++|+|++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 456667777777763 22457777777766 56666666567777788888887777765 5677777788888887776
Q ss_pred CcccC-CccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1457 FLFVL-PPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1457 ~~~~l-P~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+..+ |..+.++++|++|++++|.++.+ |..+.++++|++|+++++. ...++ ...+..+++|+.|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~-----~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA------LQALP-----DDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc------ccccC-----HhHhccCCCccEEEC
Confidence 33333 66777777888888887777766 4456777777777775431 11111 122455666666666
Q ss_pred ccCCCCCcccccccccc-ccccCCCCCCEEEeecCCc
Q 000202 1535 DVHPGDKRWDKDVKIVI-TEVSGLTKLSSLSFHFPEI 1570 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l 1570 (1866)
+.+... .++ ..+..+++|+.|+++.|.+
T Consensus 161 ~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 161 HGNRIS--------SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CSSCCC--------EECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccc--------ccCHHHhcCccccCEEECCCCcc
Confidence 643211 122 2355566666666666553
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=1.1e-15 Score=195.60 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=29.1
Q ss_pred hcCCCCcEEEccCCCCCC-CChhh-cCCC----CCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCC
Q 000202 1419 ELMTSLKVLNLSKTRIKS-LPETL-VNLK----CLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~-lp~~i-~~L~----~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
..+++|++|+|++|.+.. .+..+ ..+. +|++|+|++|.+.. .+|..+.++++|++|++++|.+.
T Consensus 53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 344555555555555442 11122 1232 35555555554331 33444555555555555555443
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=2e-14 Score=190.29 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=84.6
Q ss_pred ccCCcEEEecc---cCCccEeccC--CCccccccccccccccccccc-ccccccccccccccccccEEeEecCccCcccc
Q 000202 1661 MSGLKFCIISE---CLKIKTVVDT--KEHTTAVFPSLENLTLNHLWD-LTCIWQGILPEGSFAELRILSIHACRHLEYVF 1734 (1866)
Q Consensus 1661 l~~L~~L~l~~---c~~l~~i~~~--~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~p~L~~L~I~~C~~L~~l~ 1734 (1866)
+++|+.|++++ |+.++..+.. .......+++|+.|.+++|.+ ++......+ ...+++|+.|++++| +++...
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n-~l~~~~ 479 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYV-GESDEG 479 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSC-CSSHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCC-CCCHHH
Confidence 78899999984 5566553211 001234588999999977653 222111111 124789999999988 465533
Q ss_pred chhhhhhccccceeeeccccccceecccCccccccccCCCCcCEEeccCCcccccc----ccCCCCCccEEEEEcC
Q 000202 1735 TCSMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELANI----WRNDWPSLEYISFYGC 1806 (1866)
Q Consensus 1735 ~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~i----~~~~lpsLe~L~I~~C 1806 (1866)
....+.++++|++|+|++|+ +..-.. ......+|+|+.|+|++|+ +... ....+|.|....+...
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~-l~~~~~-----~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCC-FSERAI-----AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCC-CBHHHH-----HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCC-CcHHHH-----HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 33456778999999999997 422100 0112368999999999998 5443 1225677766666543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=6.3e-13 Score=156.31 Aligned_cols=179 Identities=26% Similarity=0.394 Sum_probs=139.0
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
.+++.|++++|.+..++. +..+++|+.|++++| .+..+|..+|..+++|++|+|++|.+..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 568889999999888773 678899999999877 6778888888889999999999999988875 468899999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+....|..++++++|++|++++|.++.+|.. ++.+++|++|+++++. +..++ ...+..+++|+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~-----~~~~~~l~~L~ 184 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ------LKRVP-----EGAFDKLTELK 184 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc------CcEeC-----hhHhccCCCcC
Confidence 999987776667788999999999999999988765 7889999999886532 11222 23366788899
Q ss_pred EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1531 TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1531 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.|+++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 185 ~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 185 TLKLDNNQLKR-------VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCCSC-------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCCc-------CCHHHhccccCCCEEEecCCCeeC
Confidence 99988543221 122346778889999998887543
No 80
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=4.7e-13 Score=160.79 Aligned_cols=178 Identities=24% Similarity=0.207 Sum_probs=141.8
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCccc---ChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVI---PPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~---p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
++++.|++++|.+..+|. +..+++|+.|++++| .+..+ |..+ ..+++|++|+|++|.+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 589999999999999885 578999999999988 45443 4555 5689999999999999999999999999999
Q ss_pred EecccccCcccCC-ccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLP-PEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP-~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|++++|.+....+ ..+.++++|++|++++|.+... |..++++++|++|+++++.-.. ..++. .+..++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~------~~~~l~ 175 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPD------IFTELR 175 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECS------CCTTCT
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchh------HHhhCc
Confidence 9999998655443 5789999999999999999855 5668999999999997643111 01222 366889
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCcc
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 1571 (1866)
+|+.|+++.+... ...+..+..+++|+.|+++.|.+.
T Consensus 176 ~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 176 NLTFLDLSQCQLE-------QLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCEEECCCCCcC-------CcCHHHhcCCCCCCEEECCCCccC
Confidence 9999999865322 123566788999999999887654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=1e-12 Score=157.56 Aligned_cols=191 Identities=21% Similarity=0.288 Sum_probs=150.3
Q ss_pred CCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCc
Q 000202 1369 PSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQ 1448 (1866)
Q Consensus 1369 ~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~ 1448 (1866)
.....+++++.|++.++.+..+|.+..+++|+.|++++| .+..+++ +..+++|++|+|++|.+..+| .++.+++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 345668899999999999999888888999999999988 6677776 588999999999999998876 688999999
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhcccc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
+|+|++|.+. .+|. ++.+++|++|++++|.++.+|. ++.+++|++|+++++. +. .++ .+..+++
T Consensus 111 ~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~-----~~~-------~l~~l~~ 174 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VS-----DLT-------PLANLSK 174 (308)
T ss_dssp EEECTTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CC-----CCG-------GGTTCTT
T ss_pred EEECCCCCCC-Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CC-----CCh-------hhcCCCC
Confidence 9999999854 4554 8999999999999999998876 8899999999987642 11 111 1678889
Q ss_pred CcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1529 LETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1529 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
|+.|+++.+... .+. .+..+++|+.|+++.|.+..++. ....++|+.|.+.
T Consensus 175 L~~L~l~~n~l~--------~~~-~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 175 LTTLKADDNKIS--------DIS-PLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT 225 (308)
T ss_dssp CCEEECCSSCCC--------CCG-GGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEE
T ss_pred CCEEECCCCccC--------cCh-hhcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEcc
Confidence 999999865432 122 37788999999999998877653 2245667777664
No 82
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.45 E-value=8.8e-13 Score=156.57 Aligned_cols=198 Identities=22% Similarity=0.299 Sum_probs=144.2
Q ss_pred cccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC-CCCC-ChhhcCCCCCcE
Q 000202 1374 WTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR-IKSL-PETLVNLKCLQI 1449 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~-i~~l-p~~i~~L~~L~~ 1449 (1866)
.++++.|++++|.+..++. +..+++|+.|++++| .+..+++..+..+++|++|+|++|. +..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3578888888888887763 678888999999877 5666655556788889999999887 7777 577888889999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhcccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQA 1528 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~ 1528 (1866)
|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++. ..+..+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~-----~~~~~l~~ 178 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR------ISSVPE-----RAFRGLHS 178 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCEECT-----TTTTTCTT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc------ccccCH-----HHhcCccc
Confidence 99998887776677888888999999999988887754 7888889988886532 112221 23567888
Q ss_pred CcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1529 LETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1529 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
|+.|+++.+... ...+..+..+++|+.|+++.|.+..++.... ...++|+.+.+.
T Consensus 179 L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~ 233 (285)
T 1ozn_A 179 LDRLLLHQNRVA-------HVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRALQYLRLN 233 (285)
T ss_dssp CCEEECCSSCCC-------EECTTTTTTCTTCCEEECCSSCCSCCCHHHH---TTCTTCCEEECC
T ss_pred cCEEECCCCccc-------ccCHhHccCcccccEeeCCCCcCCcCCHHHc---ccCcccCEEecc
Confidence 888888754322 1235567778888888888888776543211 123556666653
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=3.4e-14 Score=171.45 Aligned_cols=84 Identities=23% Similarity=0.220 Sum_probs=46.6
Q ss_pred cccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhc
Q 000202 1411 RVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIG 1489 (1866)
Q Consensus 1411 ~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~ 1489 (1866)
...+..++..+++|++|+|++|.++.++ ..++.+++|++|+|++|.+.+..| ++.+++|++|++++|.++.+|.
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC---
Confidence 3344444455556666666666666554 456666666666666665443322 5666666666666666555442
Q ss_pred CCCccceeccc
Q 000202 1490 KLTSLRYLTVF 1500 (1866)
Q Consensus 1490 ~L~~L~~L~l~ 1500 (1866)
+++|++|+++
T Consensus 98 -~~~L~~L~l~ 107 (317)
T 3o53_A 98 -GPSIETLHAA 107 (317)
T ss_dssp -CTTCCEEECC
T ss_pred -CCCcCEEECC
Confidence 2555555554
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=2.1e-14 Score=190.25 Aligned_cols=376 Identities=15% Similarity=0.098 Sum_probs=195.2
Q ss_pred cccccCcEEEccCCCCC-C---CCC-------------CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCC-C
Q 000202 1372 EEWTHAKMIFFMDNDLQ-T---LPG-------------RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKT-R 1433 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~-~---l~~-------------~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~-~ 1433 (1866)
..+++++.+.+.++... . .|. ...+++|+.|+|++|......+..+...+++|++|+|++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34677888888875421 1 111 1246778888888774332333344335778888888887 4
Q ss_pred CCC--CChhhcCCCCCcEEecccccCcccCCccc----cCCCCCcEEEccCCC--CC--cCChhhcCCCccceecccccc
Q 000202 1434 IKS--LPETLVNLKCLQILILRDCDFLFVLPPEV----GSLECLEVLDLRGTE--IK--MLPKEIGKLTSLRYLTVFFFG 1503 (1866)
Q Consensus 1434 i~~--lp~~i~~L~~L~~L~L~~~~~~~~lP~~i----~~L~~L~~L~l~~~~--i~--~lp~~i~~L~~L~~L~l~~~~ 1503 (1866)
+.. ++..+.++++|++|+|++|.+....+..+ ..+++|++|++++|. +. .++.-+.++++|++|++.+|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 443 55555577888888888877544333333 356678888888775 22 222234556788888776653
Q ss_pred ccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEE-EeecCCccchHHhhccCcc
Q 000202 1504 SMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSL-SFHFPEIECVAEFLKGSAW 1582 (1866)
Q Consensus 1504 ~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~l~~~~~~~~~~~~ 1582 (1866)
.... + ...+..+++|+.|++..+.....+ +....+...+.++++|+.| .+.......++... .
T Consensus 223 ~~~~-----l------~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~----~ 286 (594)
T 2p1m_B 223 PLEK-----L------ATLLQRAPQLEELGTGGYTAEVRP-DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY----S 286 (594)
T ss_dssp CHHH-----H------HHHHHHCTTCSEEECSBCCCCCCH-HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH----H
T ss_pred cHHH-----H------HHHHhcCCcceEcccccccCccch-hhHHHHHHHHhcCCCcccccCCcccchhhHHHHH----H
Confidence 2211 1 123566777888876644322111 1122344466777777777 33322222221111 1
Q ss_pred ccCCcceeEEEEecccccccccccccccccccCccceeEeecCCCCChHHHHHH----HhhcceecccccCceecCCCCc
Q 000202 1583 NNQQLTEFKFVVGHDVKSIVSWVTDYVQCDYNQHDRCLRFVNGKNVPPEVIQIL----IHSTAFYVDHHLSIVSLSDFGV 1658 (1866)
Q Consensus 1583 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~p~~~~~~l----~~~~~l~~~~~~~l~~L~~~~l 1658 (1866)
..++|+.|.+..+. +.+..+..+ ..+..+.+.++..-..+.. -.
T Consensus 287 ~~~~L~~L~L~~~~-------------------------------l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~-l~ 334 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-------------------------------VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LA 334 (594)
T ss_dssp HHTTCCEEECTTCC-------------------------------CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HH
T ss_pred hhCCCCEEEccCCC-------------------------------CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH-HH
Confidence 23455555542111 111111100 0111111111100000000 01
Q ss_pred ccccCCcEEEeccc--------CCccEeccCCCcccccccccccccccccccccccccccccccccccccEEeEe-----
Q 000202 1659 GYMSGLKFCIISEC--------LKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEGSFAELRILSIH----- 1725 (1866)
Q Consensus 1659 ~~l~~L~~L~l~~c--------~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~p~L~~L~I~----- 1725 (1866)
..+++|+.|+|.+| ..+...... .....+++|+.|. .+|.+++......+ ...+|+|+.|++.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~--~l~~~~~~L~~L~-~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLV--SVSMGCPKLESVL-YFCRQMTNAALITI-ARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHH--HHHHHCTTCCEEE-EEESCCCHHHHHHH-HHHCTTCCEEEEEESSTT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHH--HHHHhchhHHHHH-HhcCCcCHHHHHHH-HhhCCCcceeEeecccCC
Confidence 24677888888543 333221110 0112467888884 34555443111011 0147888888888
Q ss_pred cCccCccccch----hhhhhccccceeeeccccccceecccCcccccccc-CCCCcCEEeccCCccccccc----cCCCC
Q 000202 1726 ACRHLEYVFTC----SMIQFLAKLEELTVEYCLAVKSIILDGEITYSSCI-MLPSLKKLRLHHLPELANIW----RNDWP 1796 (1866)
Q Consensus 1726 ~C~~L~~l~~~----~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~-~lp~L~~L~L~~c~~L~~i~----~~~lp 1796 (1866)
+|.+++..+.. ..+.++++|++|++++ .+..... ..+. .+++|+.|+|++|. +.... ...+|
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCD 481 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH------HHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCT
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH------HHHHHhchhccEeeccCCC-CcHHHHHHHHhcCC
Confidence 67777754321 2356678888888865 3322110 0111 47899999999887 32221 13589
Q ss_pred CccEEEEEcCcc
Q 000202 1797 SLEYISFYGCPK 1808 (1866)
Q Consensus 1797 sLe~L~I~~Cp~ 1808 (1866)
+|++|++++|+-
T Consensus 482 ~L~~L~L~~n~~ 493 (594)
T 2p1m_B 482 SLRKLEIRDCPF 493 (594)
T ss_dssp TCCEEEEESCSC
T ss_pred CcCEEECcCCCC
Confidence 999999999985
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=1.5e-12 Score=153.25 Aligned_cols=188 Identities=24% Similarity=0.326 Sum_probs=148.3
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hc
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LV 1442 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~ 1442 (1866)
.+........+++++.+++.+|.+..++.+..+++|+.|++++|. +..++ .+..+++|++|+|++|.++.+|.. ++
T Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 30 SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCccCccChhHhc
Confidence 333444566788999999999999999888899999999999884 55554 347899999999999999988754 68
Q ss_pred CCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChh
Q 000202 1443 NLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSD 1521 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 1521 (1866)
++++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ..
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~-----~~ 175 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ------LQSLP-----EG 175 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TT
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC------cCccC-----HH
Confidence 999999999999997766666789999999999999999988765 6899999999997652 11222 23
Q ss_pred hhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1522 ILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1522 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+..+++|+.|+++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS-------VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC-------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhcCCccCCEEECCCCcCCc-------cCHHHHhCCcCCCEEEccCCCccc
Confidence 36788999999998654221 223446889999999999887653
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=1.9e-13 Score=164.97 Aligned_cols=97 Identities=22% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEE
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLD 1475 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 1475 (1866)
+++|+.|+|++| .+..+++..++.+++|++|+|++|.+..+++ +..+++|++|+|++|.+. .+| .+++|++|+
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEE
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEEE
Confidence 445666666655 4445555445666666666666666655443 666666666666666532 222 235666666
Q ss_pred ccCCCCCcCChhhcCCCccceecccc
Q 000202 1476 LRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1476 l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+++|.++.+|.. .+++|++|++++
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~ 129 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLAN 129 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCS
T ss_pred CCCCccCCcCcc--ccCCCCEEECCC
Confidence 666666655432 245566665543
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.42 E-value=1.9e-12 Score=153.58 Aligned_cols=195 Identities=21% Similarity=0.178 Sum_probs=129.9
Q ss_pred ccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEE
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQIL 1450 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L 1450 (1866)
...+++++.+++.++.+..+|... .++++.|+|++| .+..+++..+..+++|++|+|++|.++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 345667778888888887777422 267888888877 45666655567788888888888888777654 677888888
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
+|++|.+ ..+|..+..+++|++|++++|.++.+|. .+.++++|++|+++++. +..++ ...+..+++|
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~------l~~~~-----~~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE------LKTLP-----PGLLTPTPKL 150 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC------CCCCC-----TTTTTTCTTC
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC------CCccC-----hhhcccccCC
Confidence 8888774 4677777788888888888888887764 47778888888776531 11222 2235667778
Q ss_pred cEeecccCCCCCccccccccccc-cccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1530 ETLSIDVHPGDKRWDKDVKIVIT-EVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1530 ~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
+.|+++.+.. ..++. .+..+++|+.|+++.|.+..++..+. ....|+.+.+
T Consensus 151 ~~L~L~~N~l--------~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~----~~~~L~~l~L 202 (290)
T 1p9a_G 151 EKLSLANNNL--------TELPAGLLNGLENLDTLLLQENSLYTIPKGFF----GSHLLPFAFL 202 (290)
T ss_dssp CEEECTTSCC--------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCCCSEEEC
T ss_pred CEEECCCCcC--------CccCHHHhcCcCCCCEEECCCCcCCccChhhc----ccccCCeEEe
Confidence 8888774432 22332 34667788888888887776553332 2234555554
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=1.3e-13 Score=166.07 Aligned_cols=155 Identities=20% Similarity=0.293 Sum_probs=83.1
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC--CCChhhc-------CCCCCcEEecccccCcccCCccc-
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK--SLPETLV-------NLKCLQILILRDCDFLFVLPPEV- 1465 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~~~~lP~~i- 1465 (1866)
.++|+.|++++|.. .+|..+... |++|+|++|.+. .+|..+. ++.+|++|+|++|.+.+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34556666665533 556555332 666666666664 3555554 56666666666666666666655
Q ss_pred -cCCCCCcEEEccCCCCCcCChhhcCC-----CccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCC
Q 000202 1466 -GSLECLEVLDLRGTEIKMLPKEIGKL-----TSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPG 1539 (1866)
Q Consensus 1466 -~~L~~L~~L~l~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~ 1539 (1866)
+.+++|++|++++|.++.+|..++.+ ++|++|+++++.- ..+ ....++.+++|+.|+++.+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l------~~~-----~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS------LNF-----SCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC------CCC-----CTTTCCCCSSCCEEECCSCTT
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC------ccc-----hHHHhccCCCCCEEECCCCCc
Confidence 66666666666666666666555555 5666666644211 111 112244555555555553321
Q ss_pred CCccccccccccccc--cCCCCCCEEEeecCCcc
Q 000202 1540 DKRWDKDVKIVITEV--SGLTKLSSLSFHFPEIE 1571 (1866)
Q Consensus 1540 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~ 1571 (1866)
.. ....+..+ ..+++|+.|+++.|.+.
T Consensus 186 ~~-----~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 186 LG-----ERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CH-----HHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred Cc-----chHHHHHHHhccCCCCCEEECCCCcCc
Confidence 10 00012222 56667777777666544
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=1.3e-12 Score=156.74 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=149.1
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..++ . +..+++|++|+|++|.++.+|. +..
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n-~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-l~~ 127 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLKNVS-A-IAGLQSIKTLDLTSTQITDVTP-LAG 127 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCSCCG-G-GTTCTTCCEEECTTSCCCCCGG-GTT
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCC-cCCCch-h-hcCCCCCCEEECCCCCCCCchh-hcC
Confidence 34445567788999999999999999888889999999999988 466665 3 5789999999999999999876 999
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|+|++|.+. .+|. ++++++|++|++++|.++.+|. +.++++|++|+++++.- ..++ .+
T Consensus 128 l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l------~~~~-------~l 191 (308)
T 1h6u_A 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI------SDIS-------PL 191 (308)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC------CCCG-------GG
T ss_pred CCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc------CcCh-------hh
Confidence 999999999999865 4554 8999999999999999999887 99999999999976421 1111 26
Q ss_pred hccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1524 SRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
..+++|+.|+++.+... ... .+..+++|+.|+++.|.+...
T Consensus 192 ~~l~~L~~L~L~~N~l~--------~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQIS--------DVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGCTTCCEEECTTSCCC--------BCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred cCCCCCCEEEccCCccC--------ccc-cccCCCCCCEEEccCCeeecC
Confidence 78999999999965432 222 478999999999999987654
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.40 E-value=7.8e-13 Score=155.69 Aligned_cols=181 Identities=23% Similarity=0.329 Sum_probs=146.9
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-h
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-L 1441 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i 1441 (1866)
..+...+.+..+++|+.|++++|.+..++.+..+++|++|++++| .+..+++..++.+++|++|+|++|.++.+|.. +
T Consensus 51 ~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 129 (272)
T 3rfs_A 51 SDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129 (272)
T ss_dssp SCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHh
Confidence 344555667889999999999999999888889999999999988 67788888789999999999999999988755 7
Q ss_pred cCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
+.+++|++|+|++|.+.+..|..++++++|++|++++|.++.+|.. ++.+++|++|++.++. +..++ .
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~-----~ 198 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ------LKSVP-----D 198 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----T
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc------CCccC-----H
Confidence 9999999999999987765566679999999999999999988765 6899999999997642 11222 2
Q ss_pred hhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1521 DILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
..+..+++|+.|+++.++.. +.+++|+.|++..|.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~--------------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD--------------CTCPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC--------------CCTTTTHHHHHHHHH
T ss_pred HHHhCCcCCCEEEccCCCcc--------------ccCcHHHHHHHHHHh
Confidence 34678999999999865321 345677777665544
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=9.6e-13 Score=151.74 Aligned_cols=110 Identities=25% Similarity=0.403 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC-CCCCCh-hhcCCCCCcEEeccc-ccCcccCCc
Q 000202 1387 LQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR-IKSLPE-TLVNLKCLQILILRD-CDFLFVLPP 1463 (1866)
Q Consensus 1387 l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~~~~lP~ 1463 (1866)
+..+|. -.++|+.|++++| .+..+|+..|..+++|++|++++|. ++.+|. .+.++++|++|+|++ |.+....|.
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666665 2346777777766 5666776666777778888887776 777664 567777788887777 554444445
Q ss_pred cccCCCCCcEEEccCCCCCcCChhhcCCCccc---eeccc
Q 000202 1464 EVGSLECLEVLDLRGTEIKMLPKEIGKLTSLR---YLTVF 1500 (1866)
Q Consensus 1464 ~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~ 1500 (1866)
.++++++|++|++++|.++.+|. ++.+++|+ +|+++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT 138 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC
Confidence 67777777788777777777775 66666665 55553
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=4.3e-12 Score=149.17 Aligned_cols=179 Identities=23% Similarity=0.352 Sum_probs=143.9
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~ 1454 (1866)
..+.++++++.+..+|... .++++.|++++| .+..+|+..|..+++|++|+|++|.++.+|.. +..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4678999999999988532 268999999988 67788887778999999999999999999866 48899999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEee
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLS 1533 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~ 1533 (1866)
|.+....|..+.++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ...+..+++|+.|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~-----~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE------LQSLP-----KGVFDKLTSLKELR 163 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEE
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc------CCccC-----HhHccCCcccceeE
Confidence 997665556779999999999999999988754 7999999999997642 11222 23467899999999
Q ss_pred cccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1534 IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1534 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
++.+.... .....+..+++|+.|+++.|.+..++
T Consensus 164 L~~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 164 LYNNQLKR-------VPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CCSSCCSC-------CCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ecCCcCcE-------eChhHhccCCCcCEEECCCCcCCcCC
Confidence 98643221 12334788999999999999887654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=4e-12 Score=147.68 Aligned_cols=177 Identities=23% Similarity=0.298 Sum_probs=137.3
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEeccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRD 1454 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~ 1454 (1866)
..+.+++.++.+..+|.... ++++.|+|++| .+..+++..+..+++|++|+|++|.+..++. .+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678889999988885322 68999999987 5667777667889999999999999987764 578999999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEee
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLS 1533 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~ 1533 (1866)
|.+....|..++++++|++|++++|.++.+|.. ++++++|++|+++++. +..++ ...+..+++|+.|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~-----~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ------LQSIP-----AGAFDKLTNLQTLS 161 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc------CCccC-----HHHcCcCcCCCEEE
Confidence 997766667788999999999999999988776 6889999999986532 11222 23467889999999
Q ss_pred cccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1534 IDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1534 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
++.+.... .....+..+++|+.|+++.|.+.+
T Consensus 162 L~~N~l~~-------~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQS-------VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSC-------CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCc-------cCHHHHhCCCCCCEEEeeCCceeC
Confidence 98543221 223467788999999999998765
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.9e-12 Score=153.79 Aligned_cols=178 Identities=25% Similarity=0.297 Sum_probs=145.6
Q ss_pred CCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCC
Q 000202 1366 TEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLK 1445 (1866)
Q Consensus 1366 ~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~ 1445 (1866)
........+++++.|++.+|.+..++.+..+++|+.|++++| .+..+++ +..+++|++|+|++|.++.+|. ++.++
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 333445678899999999999999998889999999999988 5667766 5889999999999999998775 99999
Q ss_pred CCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhc
Q 000202 1446 CLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
+|++|+|++|.+.. + ..++.+++|++|++++|.++.+ ..++++++|++|+++++.- ..++ .+..
T Consensus 113 ~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l------~~~~-------~l~~ 176 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI------SDIV-------PLAG 176 (291)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC------CCCG-------GGTT
T ss_pred CCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc------ccch-------hhcC
Confidence 99999999998654 4 4789999999999999999988 5799999999999976421 1111 1678
Q ss_pred cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+++|+.|+++.+... .+ ..+..+++|+.|+++.|.+..
T Consensus 177 l~~L~~L~L~~N~i~--------~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHIS--------DL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCC--------BC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCC--------CC-hhhccCCCCCEEECcCCcccC
Confidence 999999999865432 22 358889999999999887654
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=4.8e-14 Score=180.35 Aligned_cols=371 Identities=17% Similarity=0.063 Sum_probs=213.4
Q ss_pred CcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCcccCCcccc-CCC
Q 000202 1397 PNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFVLPPEVG-SLE 1469 (1866)
Q Consensus 1397 ~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~-~L~ 1469 (1866)
++|+.|+|++|. +... ...++..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+....+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578889998774 4433 3444688999999999999998 5678899999999999999986554443333 455
Q ss_pred ----CCcEEEccCCCCC-----cCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCC
Q 000202 1470 ----CLEVLDLRGTEIK-----MLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGD 1540 (1866)
Q Consensus 1470 ----~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~ 1540 (1866)
+|++|++++|.++ .+|..+.++++|++|+++++. +.......+ .......+++|+.|+++.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l-----~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLL-----CEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHH-----HHHHTSTTCCCCEEECTTSCCB
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHH-----HHHHhcCCCcceEEECCCCCCC
Confidence 7999999999988 468889999999999997643 111000000 0001123457999999865432
Q ss_pred CccccccccccccccCCCCCCEEEeecCCccchHH-hhcc-CccccCCcceeEEEEeccccccc-ccccccccccccCcc
Q 000202 1541 KRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAE-FLKG-SAWNNQQLTEFKFVVGHDVKSIV-SWVTDYVQCDYNQHD 1617 (1866)
Q Consensus 1541 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 1617 (1866)
. .....+...+..+++|+.|+++.|.+..... .+.. ......+|+.|.+..+ .+.... ..+...+. ..
T Consensus 156 ~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-----~~ 226 (461)
T 1z7x_W 156 A---ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-----SK 226 (461)
T ss_dssp G---GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-----HC
T ss_pred H---HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-----hC
Confidence 1 1112234556778899999999988754321 1111 0012335666655311 111000 00000000 00
Q ss_pred ceeEeecCCC--CChHHHHHHHhhcceecccccCceecCCCCcccccCCcEEEecccCCccEeccC-CCccccccccccc
Q 000202 1618 RCLRFVNGKN--VPPEVIQILIHSTAFYVDHHLSIVSLSDFGVGYMSGLKFCIISECLKIKTVVDT-KEHTTAVFPSLEN 1694 (1866)
Q Consensus 1618 ~~L~~~~~~~--~p~~~~~~l~~~~~l~~~~~~~l~~L~~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~~f~~L~~ 1694 (1866)
..++.+.... +.......+ .......+++|++|++++| .+...+.. .......+++|+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l-----------------~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAEL-----------------CPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHH-----------------HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCccEEeccCCcCChHHHHHH-----------------HHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcce
Confidence 1111111111 111111111 0001234789999999997 45442100 0012234789999
Q ss_pred ccccccccccccccccccc---cccccccEEeEecCccCcccc---chhhhhhccccceeeeccccccceecccCccccc
Q 000202 1695 LTLNHLWDLTCIWQGILPE---GSFAELRILSIHACRHLEYVF---TCSMIQFLAKLEELTVEYCLAVKSIILDGEITYS 1768 (1866)
Q Consensus 1695 L~l~~~~~L~~~~~~~~~~---~~~p~L~~L~I~~C~~L~~l~---~~~~l~~L~sLe~L~I~~C~~L~~l~~~~~~~~~ 1768 (1866)
|+++++. +.......+.. ...++|+.|++++|. ++... ....+..+++|++|++++| .+....... . ..
T Consensus 289 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~-l-~~ 363 (461)
T 1z7x_W 289 LSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE-L-CQ 363 (461)
T ss_dssp EECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH-H-HH
T ss_pred EECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH-H-HH
Confidence 9998752 22211001111 123699999999994 55432 1235667899999999998 343321110 0 00
Q ss_pred ccc-CCCCcCEEeccCCcccc-----cccc--CCCCCccEEEEEcCc
Q 000202 1769 SCI-MLPSLKKLRLHHLPELA-----NIWR--NDWPSLEYISFYGCP 1807 (1866)
Q Consensus 1769 ~~~-~lp~L~~L~L~~c~~L~-----~i~~--~~lpsLe~L~I~~Cp 1807 (1866)
.+. ..++|+.|+|++|. +. .+.. ..+++|++|++++|+
T Consensus 364 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 111 26899999999995 54 3322 258999999999984
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=3.2e-12 Score=150.94 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=138.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|++|++++| .+..+++..+..+++|++|+|++|.+..+| ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46899999999998776 4678999999999988 677788777788999999999999998776 6789999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCc--CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKM--LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
+++|.+....+..++++++|++|++++|.++. +|..++++++|++|+++++.- ..+ +...+..+++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l------~~~-----~~~~~~~l~~L 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------QSI-----YCTDLRVLHQM 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC------CEE-----CGGGGHHHHTC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC------CcC-----CHHHhhhhhhc
Confidence 99998776666679999999999999999986 688999999999999876421 111 12234555555
Q ss_pred c----EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1530 E----TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1530 ~----~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+ .|+++.+.. ..+........+|+.|+++.|.+..++
T Consensus 176 ~~l~l~L~ls~n~l--------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 176 PLLNLSLDLSLNPM--------NFIQPGAFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp TTCCEEEECCSSCC--------CEECTTSSCSCCEEEEECCSSCCSCCC
T ss_pred cccceeeecCCCcc--------cccCccccCCCcccEEECCCCceeecC
Confidence 5 677764332 223333444457888999888877654
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=4.9e-13 Score=163.06 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCccc-CCccccCCCCCcEEEccCCCCC-cCChhhcCCCccceecc
Q 000202 1422 TSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFV-LPPEVGSLECLEVLDLRGTEIK-MLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1422 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l 1499 (1866)
++|++|++++|.+...+..+.++++|++|+|++|.+... +|..+.++++|++|++++|.++ ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 667777777776665555566667777777777665443 5666666777777777777666 44556666777777766
Q ss_pred ccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCC-CCCEEEeecC
Q 000202 1500 FFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLT-KLSSLSFHFP 1568 (1866)
Q Consensus 1500 ~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 1568 (1866)
.+|...+... + ...+.++++|+.|+++.+.... ...+...+..++ +|+.|+++.|
T Consensus 150 ~~~~~l~~~~---l------~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFA---L------QTLLSSCSRLDELNLSWCFDFT-----EKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHH---H------HHHHHHCTTCCEEECCCCTTCC-----HHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHH---H------HHHHhcCCCCCEEcCCCCCCcC-----hHHHHHHHHhcccCCCEEEeCCC
Confidence 5543221100 0 1124455666666665431110 001233345556 6666666554
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1e-12 Score=167.91 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred cCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecc
Q 000202 1376 HAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILR 1453 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~ 1453 (1866)
+++.|++++|.+..++ .+..+++|++|+|++|. +...++ ++.+++|++|+|++|.++.+|.. ++|++|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 4555555555554443 23444555555555442 222222 34445555555555544444321 445555555
Q ss_pred cccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecc
Q 000202 1454 DCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1454 ~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l 1499 (1866)
+|.+.+..| ..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 554333222 1234455555555554443 223444444444444
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=4e-12 Score=165.42 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=140.2
Q ss_pred CCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCC
Q 000202 1365 LTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNL 1444 (1866)
Q Consensus 1365 ~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L 1444 (1866)
+........+.+|+.|++.+|.+..++.+..+++|+.|+|++| .+..+++ +..+++|++|+|++|.+..+| .++.|
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred cccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCCh-hhccC
Confidence 3334445678888999999999998888888999999999987 5666666 578999999999999998876 68899
Q ss_pred CCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhh
Q 000202 1445 KCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1445 ~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
++|++|+|++|.+.. + ..++.|++|+.|+|++|.++.+ ..++.|++|+.|+++.+.- . .++ .+.
T Consensus 109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l-~-----~~~-------~l~ 172 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-S-----DIV-------PLA 172 (605)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC-C-----CCG-------GGT
T ss_pred CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC-C-----Cch-------hhc
Confidence 999999999998554 4 4688899999999999999888 5788999999998876421 1 111 167
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.+++|+.|+++.|... .+ ..+..+++|+.|+|+.|.+..
T Consensus 173 ~l~~L~~L~Ls~N~i~--------~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHIS--------DL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCCEEECCSSCCC--------BC-GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEECcCCCCC--------CC-hHHccCCCCCEEEccCCcCcC
Confidence 7889999999865432 12 467888999999998887654
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=3.8e-12 Score=150.29 Aligned_cols=182 Identities=23% Similarity=0.250 Sum_probs=143.4
Q ss_pred CccccccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKC 1446 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~ 1446 (1866)
.+..+++|+.|++++|.+..++. +..+++|+.|++++| .+..+++..+..+++|++|++++|.+..++. .++.+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 46778999999999999998774 778999999999988 5777777777899999999999999998875 7999999
Q ss_pred CcEEecccccCcc-cCCccccCCCCCcEEEccCCCCCcCC-hhhcCCCccc----eeccccccccCCCccccCCCCCCCh
Q 000202 1447 LQILILRDCDFLF-VLPPEVGSLECLEVLDLRGTEIKMLP-KEIGKLTSLR----YLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1447 L~~L~L~~~~~~~-~lP~~i~~L~~L~~L~l~~~~i~~lp-~~i~~L~~L~----~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
|++|+|++|.+.. .+|..++++++|++|++++|.++.+| ..+..+++|+ +|++++. ....++..
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n------~l~~~~~~---- 195 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN------PMNFIQPG---- 195 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS------CCCEECTT----
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC------cccccCcc----
Confidence 9999999999765 37999999999999999999999876 4577777777 5555432 12222222
Q ss_pred hhhhccccCcEeecccCCCCCccccccccccc-cccCCCCCCEEEeecCCccc
Q 000202 1521 DILSRLQALETLSIDVHPGDKRWDKDVKIVIT-EVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.....+|+.|+++.+... .++. .+..+++|+.|+++.|.+.+
T Consensus 196 --~~~~~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 196 --AFKEIRLKELALDTNQLK--------SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp --SSCSCCEEEEECCSSCCS--------CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred --ccCCCcccEEECCCCcee--------ecCHhHhcccccccEEEccCCcccc
Confidence 123347999999864422 2333 35789999999999998764
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=2.5e-12 Score=148.30 Aligned_cols=191 Identities=12% Similarity=0.275 Sum_probs=149.3
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L 1450 (1866)
.+++.|++.+|.+..+|. +..+++|+.|++++|..+..+++..|..+++|++|+|++ |.++.+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999998874 678999999999988658889987789999999999998 9999887 568899999999
Q ss_pred ecccccCcccCCccccCCCCCc---EEEccCC-CCCcCChh-hcCCCccc-eeccccccccCCCccccCCCCCCChhhhh
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLE---VLDLRGT-EIKMLPKE-IGKLTSLR-YLTVFFFGSMYKSEYIKLPPDLISSDILS 1524 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~~~~~~~~~~~~~l~~~~~~~~~l~ 1524 (1866)
++++|.+. .+|. ++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++.. ...++.. .+.
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~------l~~i~~~-----~~~ 177 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG------FTSVQGY-----AFN 177 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC------CCEECTT-----TTT
T ss_pred eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC------CcccCHh-----hcC
Confidence 99999855 4886 88888888 9999999 99998765 89999999 99986532 1233332 233
Q ss_pred ccccCcEeecccCCCCCccccccccc-cccccCC-CCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIV-ITEVSGL-TKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
. ++|+.|+++.+.. ...+ ...+..+ ++|+.|+++.|.+..++.. ...+|+.|.+
T Consensus 178 ~-~~L~~L~L~~n~~-------l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~------~~~~L~~L~l 233 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKY-------LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK------GLEHLKELIA 233 (239)
T ss_dssp T-CEEEEEECTTCTT-------CCEECTTTTTTCSBCCSEEECTTCCCCCCCCT------TCTTCSEEEC
T ss_pred C-CCCCEEEcCCCCC-------cccCCHHHhhccccCCcEEECCCCccccCChh------HhccCceeec
Confidence 3 6899999985531 1122 3456778 9999999999998765422 3455666654
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=7.3e-12 Score=139.45 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=100.4
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCc
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQ 1448 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~ 1448 (1866)
+...+++++.+++++|.+..+|.+..+++|+.|++++| .+..++ .+..+++|++|++++|.++. .|..++.+++|+
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred ChhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34667888899999888888887778888888888877 454443 24678888888888888874 677788888888
Q ss_pred EEecccccCcccCCccccCCCCCcEEEccCCC-CCcCChhhcCCCccceeccccc
Q 000202 1449 ILILRDCDFLFVLPPEVGSLECLEVLDLRGTE-IKMLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1449 ~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
+|+|++|.+....|..++++++|++|++++|. +..+| .+..+++|++|+++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 88888888777777788888888888888886 77776 5777778888877553
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.30 E-value=1.7e-11 Score=149.95 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=81.2
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCC-hhhcCCCCCcE-Eeccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLP-ETLVNLKCLQI-LILRD 1454 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp-~~i~~L~~L~~-L~L~~ 1454 (1866)
++++.+++.++.+|.-. .++++.|+|++| .+..+|+..|.++++|++|+|++|.+. .+| ..+.+|++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45677778888887422 357888888877 677788777778888888888888864 455 35677777765 44455
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecc
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 1499 (1866)
|.+....|..+.++++|++|++++|.++.+|.. +....++..|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 665555566778888888888888887776642 334444444444
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=3e-11 Score=140.26 Aligned_cols=152 Identities=23% Similarity=0.301 Sum_probs=126.9
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~ 1451 (1866)
++++.|++.+|.+..++. +..+++|+.|+|++| .+..+++..+..+++|++|+|++|.++.+| ..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 578999999999997763 678999999999988 677788777789999999999999999887 4578999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALE 1530 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~ 1530 (1866)
|++|.+.+..|..++++++|++|++++|.++.+|. .++++++|++|++.++. +..++ ...+..+++|+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~-----~~~~~~l~~L~ 182 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ------LQSVP-----HGAFDRLGKLQ 182 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc------CCccC-----HHHHhCCCCCC
Confidence 99998765555567999999999999999999987 58999999999997532 11222 23467889999
Q ss_pred EeecccCC
Q 000202 1531 TLSIDVHP 1538 (1866)
Q Consensus 1531 ~L~l~~~~ 1538 (1866)
.|+++.++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 99998654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.24 E-value=5.8e-11 Score=135.53 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=101.6
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++.++.+..+|... .++|+.|+|++| .+..+++..+..+++|++|+|++|.+..+|.. +..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 356888888888888532 388999999988 56667666668899999999999999988854 688999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
.+....|..++.+++|++|++++|.++.+|..+.++++|++|++++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC
Confidence 8765555567889999999999999999999899999999998864
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=1.4e-11 Score=157.27 Aligned_cols=191 Identities=16% Similarity=0.163 Sum_probs=140.6
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
.+..+++|+.|++++|.+...+++..+++|+.|+|++| .+..+|. .++|++|+|++|.+..+|.. .+++|++
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~L~~N~l~~~~~~--~l~~L~~ 124 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAANNNISRVSCS--RGQGKKN 124 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEECCSSCCCCEEEC--CCSSCEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC-----CCCcCEEECcCCcCCCCCcc--ccCCCCE
Confidence 46778899999999999987666888999999999988 5666653 37899999999999877753 5688999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcC-Chhhc-CCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIG-KLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~-~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
|+|++|.+.+..|..++++++|++|++++|.++.+ |..+. .+++|++|+++++.- ..++. ...++
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l------~~~~~-------~~~l~ 191 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI------YDVKG-------QVVFA 191 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC------CEEEC-------CCCCT
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc------ccccc-------cccCC
Confidence 99999988877788888899999999999988864 55565 789999998876431 11111 23477
Q ss_pred cCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEEE
Q 000202 1528 ALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKFV 1593 (1866)
Q Consensus 1528 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l~ 1593 (1866)
+|+.|+++.+. ...++..+..+++|+.|++++|.+..++..+ ...++|+.+.+.
T Consensus 192 ~L~~L~Ls~N~--------l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l----~~l~~L~~L~l~ 245 (487)
T 3oja_A 192 KLKTLDLSSNK--------LAFMGPEFQSAAGVTWISLRNNKLVLIEKAL----RFSQNLEHFDLR 245 (487)
T ss_dssp TCCEEECCSSC--------CCEECGGGGGGTTCSEEECTTSCCCEECTTC----CCCTTCCEEECT
T ss_pred CCCEEECCCCC--------CCCCCHhHcCCCCccEEEecCCcCcccchhh----ccCCCCCEEEcC
Confidence 78888887443 2235556777788888888888877654322 233456666553
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=8.8e-11 Score=143.60 Aligned_cols=97 Identities=15% Similarity=0.246 Sum_probs=57.7
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCc-cccCCCCCcE-EEc
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPP-EVGSLECLEV-LDL 1476 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~-L~l 1476 (1866)
++++.+++ .+..+|..+ .++|++|+|++|+|+.+|. .+.+|++|++|+|++|.+.+.+|. .+.+|++|+. +.+
T Consensus 12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEEST-TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCC-CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 44555544 566666654 3466777777777777764 466777777777777766555553 4556666554 444
Q ss_pred cCCCCCcCC-hhhcCCCccceeccc
Q 000202 1477 RGTEIKMLP-KEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1477 ~~~~i~~lp-~~i~~L~~L~~L~l~ 1500 (1866)
++|.++.+| ..+..+++|++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEE
T ss_pred cCCcccccCchhhhhcccccccccc
Confidence 556666553 335555666665553
No 108
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.7e-11 Score=147.33 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=138.3
Q ss_pred ccccCcEEEccCCCCC-CCCC-C--CCCCcccEEEccCCcCCcccChhHHhcC-----CCCcEEEccCCCCCCCC-hhhc
Q 000202 1373 EWTHAKMIFFMDNDLQ-TLPG-R--PSCPNLLTLFLQRNCRLRVIPPSFFELM-----TSLKVLNLSKTRIKSLP-ETLV 1442 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~-~l~~-~--~~~~~L~~L~L~~~~~l~~~p~~~~~~l-----~~L~~L~Ls~~~i~~lp-~~i~ 1442 (1866)
.+++|+.|++++|.+. .+|. + ..+++|+.|+|++| .+..+|..+ +.+ ++|++|+|++|.+..+| ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 4789999999999998 5664 3 78999999999988 456666544 556 89999999999999877 7899
Q ss_pred CCCCCcEEecccccCccc--CCccc--cCCCCCcEEEccCCCCCcCC---hh-hcCCCccceeccccccccCCCccccCC
Q 000202 1443 NLKCLQILILRDCDFLFV--LPPEV--GSLECLEVLDLRGTEIKMLP---KE-IGKLTSLRYLTVFFFGSMYKSEYIKLP 1514 (1866)
Q Consensus 1443 ~L~~L~~L~L~~~~~~~~--lP~~i--~~L~~L~~L~l~~~~i~~lp---~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~ 1514 (1866)
.+++|++|+|++|.+.+. +|..+ +++++|++|++++|.++.+| .. +.++++|++|+++++.- . ..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~-----~~~ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-R-----DAA 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC-C-----SSC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC-C-----ccc
Confidence 999999999999997665 34555 89999999999999999554 33 46889999999976421 1 111
Q ss_pred CCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1515 PDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1515 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+...+..+++|+.|+++.+.. ..++..+. ++|+.|+++.|.+..++
T Consensus 245 ----~~~~~~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 245 ----GAPSCDWPSQLNSLNLSFTGL--------KQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp ----CCSCCCCCTTCCEEECTTSCC--------SSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred ----chhhhhhcCCCCEEECCCCcc--------Chhhhhcc--CCceEEECCCCCCCCCh
Confidence 011244678999999985442 23455554 79999999999988763
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=3.9e-11 Score=134.93 Aligned_cols=126 Identities=29% Similarity=0.414 Sum_probs=94.1
Q ss_pred ccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++. +..+++|+.|++++| .+..+|...|..+++|++|+|++|.++.+|.. ++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 467788888888877664 457788888888876 56677777667788888888888888777654 57788888888
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|++|.+.+..|..++++++|++|++++|.++.+|.. +.++++|++|++.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 888876554444567788888888888888777665 67778888887754
No 110
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.22 E-value=1.6e-10 Score=141.58 Aligned_cols=283 Identities=13% Similarity=0.130 Sum_probs=169.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC------CHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW------NTRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~i~~ 1052 (1866)
.+.||+++++++.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.+.+
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHHHH
Confidence 4678999999998888653 689999999999999999996532 2 6777765432 56666676666
Q ss_pred Hhcc---------------C-CC--CccCHHHHHHHHHHHhCC-CcEEEEEeCCCCccc---------hhhhcCCCCCCC
Q 000202 1053 QLSL---------------H-CK--DRETDAQVAEKLWQVLNG-EKFLLLLDDVWEQID---------LEAVGIPVPGSE 1104 (1866)
Q Consensus 1053 ~l~~---------------~-~~--~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~l~~~l~~~~ 1104 (1866)
.+.. . .. ...+..++...+.+.... ++++|||||++.... +..+..... ..
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~ 162 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SL 162 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HC
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hc
Confidence 5532 0 00 113445555666555543 389999999986432 222221111 12
Q ss_pred CCcEEEEccCChhhhcc----------C--CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1105 NGSKIFMASRELDVCRN----------M--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1105 ~gs~IivTTR~~~v~~~----------~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
.+.++|+|++...+... . .....+.+.+|+.+++.+++.+.+.......+ .+.+..|...|+|.|++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHH
Confidence 46789999887543111 1 11247899999999999999876532211111 34577899999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhcc---CCcchhHHHHhhcCCCCCccccHHHHHH
Q 000202 1173 TIVTAKALAGERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQL---KDHDVKSCFLHCSLFPEDREVSIVEFID 1249 (1866)
Q Consensus 1173 i~~~g~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L---~~~~lk~cfly~s~Fp~~~~i~~~~Li~ 1249 (1866)
+..++..+....+...+.. +. .+.+...+.-.+..+ ++. .+..+..+|. + ..+...+..
T Consensus 242 l~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g-~~~~~~l~~ 303 (350)
T 2qen_A 242 LVVFGVEYLRNGDFGRAMK--RT-----------LEVAKGLIMGELEELRRRSPR-YVDILRAIAL---G-YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHCCHHHHHH--HH-----------HHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-CCSHHHHHH
T ss_pred HHHHHHHHhccccHhHHHH--HH-----------HHHHHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-CCCHHHHHH
Confidence 9999876532122222111 10 011111111112222 554 7888888887 2 245555544
Q ss_pred HHHHc--CccchhhHhHHHhHHHHHHHHHHhhhhhcccccCcccc-hhHHHHH
Q 000202 1250 YCIQE--GIIVGTLANAHKRGHQIVDVLVDASLLLINEVHNSIRM-PGLMKDL 1299 (1866)
Q Consensus 1250 ~W~ae--G~i~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~m-hdlv~dl 1299 (1866)
...+. |. .......+++.|.+.+++... .+.|.+ |.++++.
T Consensus 304 ~~~~~~~~~-------~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 304 YLAVKGTKI-------PEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHTTCCC-------CHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHH
T ss_pred HHHHHhCCC-------CHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHH
Confidence 43221 21 123456789999999999754 244554 5566654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=8.5e-12 Score=145.63 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=71.4
Q ss_pred ccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccC
Q 000202 1382 FMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVL 1461 (1866)
Q Consensus 1382 l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 1461 (1866)
+..+.+..++.+..+++|+.|++++| .+..+| . ++.+++|++|+|++|.++.+|. ++.+++|++|+|++|.+. .+
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l 100 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NL 100 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTS-CCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CC
T ss_pred hcCCCcccccchhhcCcCcEEECcCC-Ccccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-Cc
Confidence 33444444333334444444444444 333333 1 2344445555555554444444 444455555555544422 23
Q ss_pred CccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCC
Q 000202 1462 PPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDK 1541 (1866)
Q Consensus 1462 P~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 1541 (1866)
|.... .+|++|++++|.++.+| .++++++|++|+++++. +..+ ..+..+++|+.|+++.+...
T Consensus 101 ~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~------i~~~-------~~l~~l~~L~~L~L~~N~i~- 163 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK------LKSI-------VMLGFLSKLEVLDLHGNEIT- 163 (263)
T ss_dssp TTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC------CCBC-------GGGGGCTTCCEEECTTSCCC-
T ss_pred Ccccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc------CCCC-------hHHccCCCCCEEECCCCcCc-
Confidence 32211 44555555555444443 34445555555443321 0000 12344555555555533211
Q ss_pred ccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1542 RWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1542 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
.. ..+..+++|+.|+++.|.+..
T Consensus 164 -------~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 -------NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -------BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred -------ch-HHhccCCCCCEEeCCCCcccC
Confidence 11 345566677777776665443
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.21 E-value=5.7e-11 Score=140.82 Aligned_cols=176 Identities=23% Similarity=0.264 Sum_probs=147.5
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L 1452 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..++.. +.+++|++|+|++|.+..+|..+..+++|++|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 57899999999998765 4678999999999988 56667654 6799999999999999999999999999999999
Q ss_pred ccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcE
Q 000202 1453 RDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALET 1531 (1866)
Q Consensus 1453 ~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~ 1531 (1866)
++|.+.+..|..++++++|++|++++|.++.+|.. +..+++|++|+++++. +..++. ..+..+++|+.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~------l~~l~~-----~~~~~l~~L~~ 176 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN------LTELPA-----GLLNGLENLDT 176 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CSCCCT-----TTTTTCTTCCE
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc------CCccCH-----HHhcCcCCCCE
Confidence 99997766667899999999999999999999876 6899999999996532 222332 34678999999
Q ss_pred eecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1532 LSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1532 L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
|+++.+. ...++..+..+.+|+.|+++.|...+
T Consensus 177 L~L~~N~--------l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 177 LLLQENS--------LYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EECCSSC--------CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EECCCCc--------CCccChhhcccccCCeEEeCCCCccC
Confidence 9998543 33577778888899999999998765
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=5.9e-11 Score=134.43 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=60.9
Q ss_pred EEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccC
Q 000202 1379 MIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1379 ~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~ 1457 (1866)
.+++.++.+..+|... .++|+.|++++| .+..+++..|..+++|++|+|++|.+..+ |..+.++.+|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3445555555555311 145555555554 34445544445555555555555555544 44555555555555555553
Q ss_pred cccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccc
Q 000202 1458 LFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1458 ~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 1500 (1866)
....+..+.++++|++|+|++|.++.+ |..+..+++|++|+++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 322222345555555555555555544 2335555555555554
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=5.9e-11 Score=149.07 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=144.0
Q ss_pred CCCceeehhhHHHHHHhh-hc--CC--CCcEEEEE--EecCCCchhHHHHHHHHhhhccc-----cc-eEEEEeeccccc
Q 000202 185 SKDLIGVEWRIKEIESLL-RT--GS--AGVYKLGI--WGIGGIGKTTIAGAVFNKISRHF-----EG-SYFACNVRAAEE 251 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L-~~--~~--~~~~~i~I--~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~~~~~~~~ 251 (1866)
+..|+||+.+++++.++| .. .+ ...+.+.| +|++|+||||||++++++....+ .. .+|+... .
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF----N 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG----G
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC----C
Confidence 468999999999999998 42 11 23445666 99999999999999999765532 22 3344321 2
Q ss_pred cccHHHHHHHHHHHHhccccccCcc-chhHHHHHHHhh--cCcEEEEEecCCCH--------HHHHHHhhccCCC---C-
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQ-NISVNFQSKRLA--RKKVLIVFDDVNHP--------RQIELLIGRLDRF---A- 316 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~-~~~~~~l~~~L~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~---~- 316 (1866)
......+..+++..+.......... ......+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 2334567777777664332110110 111234444453 67999999999753 3344333332211 2
Q ss_pred -CCCEEEEEccccchhccC---------ccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---
Q 000202 317 -SGSQVIITTRDKQVLTNC---------EVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ--- 380 (1866)
Q Consensus 317 -~gs~IiiTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~--- 380 (1866)
....||+||++..+.... .....+++++|+.+++.++|...+ +..... ..+....+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYGEDK 253 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHCGGG
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHhc
Confidence 344588888766532111 012238999999999999997543 332212 2456788999999
Q ss_pred ---CCcceeeeecccc------cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHH
Q 000202 381 ---GVPLALKVLGCYL------CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAM 441 (1866)
Q Consensus 381 ---GlPLAl~~~g~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~ 441 (1866)
|.|..+..+.... .+ -+.+.+...+..... ...+.-++..||+.++.++..++.+
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l 320 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEA 320 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHH
Confidence 9997554443221 11 133444444433210 2445667889999999888877744
No 115
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=2.4e-10 Score=140.44 Aligned_cols=282 Identities=14% Similarity=0.146 Sum_probs=165.3
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-----CCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-----WNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~~~ 1053 (1866)
.+.||+++++.+.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+++... .+...+...+.+.
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHHHHHHH
Confidence 46788999999998 765 689999999999999999996532 11 2578877642 3445555555544
Q ss_pred hcc-------------C-------C-----C----CccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc-----chhhhcCC
Q 000202 1054 LSL-------------H-------C-----K----DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI-----DLEAVGIP 1099 (1866)
Q Consensus 1054 l~~-------------~-------~-----~----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~~~~l~~~ 1099 (1866)
+.. . . . .......+...+.+.-. ++++|||||++... +|..+...
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHH
Confidence 321 0 0 0 01233444444443322 49999999997522 22222111
Q ss_pred CCCCCCCcEEEEccCChhhhcc----------CC--CCcEEEecCCChHHHHHHHHHHhc--CCCCCchHHHHHHHHHHH
Q 000202 1100 VPGSENGSKIFMASRELDVCRN----------MD--VNMVVKLETLSMKDAWELFCKEVG--GIIQSPDIHLYARAIVKG 1165 (1866)
Q Consensus 1100 l~~~~~gs~IivTTR~~~v~~~----------~~--~~~~~~l~~L~~~~a~~Lf~~~~~--~~~~~~~~~~~~~~I~~~ 1165 (1866)
+.....+.++|+|++....... .. ....+.+.+|+.+++.+++...+. +.... .. ..|++.
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~----~~i~~~ 238 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DY----EVVYEK 238 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CH----HHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cH----HHHHHH
Confidence 1111236789999997653211 11 125789999999999999987653 21211 22 679999
Q ss_pred cCCChHHHHHHHHHhhCCCCHHHHHHH-hhhCCCCccccccchhhHHHHHH-HhHh--ccCCcchhHHHHhhcCCCCCcc
Q 000202 1166 CCGLPLLTIVTAKALAGERNVSVWKHA-SRKFSLPITIEECCTEDLIELLK-FSFD--QLKDHDVKSCFLHCSLFPEDRE 1241 (1866)
Q Consensus 1166 c~GlPLAi~~~g~~L~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~i~~~l~-~Sy~--~L~~~~lk~cfly~s~Fp~~~~ 1241 (1866)
|+|.|+++..++..+....+...|... .+. ....+...+. +.+. .||+. .+..+..+|. +.
T Consensus 239 t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g~- 303 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEY----------AKKLILKEFENFLHGREIARKR-YLNIMRTLSK---CG- 303 (357)
T ss_dssp HCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH----------HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---CB-
T ss_pred hCCCHHHHHHHHHHHccccchHHHHHHHHHH----------HHHHHHHHHHHHhhccccccHH-HHHHHHHHHc---CC-
Confidence 999999999998876532333333211 100 0011111121 2111 57665 7888888887 22
Q ss_pred ccHHHHHHHHH-HcCc-cchhhHhHHHhHHHHHHHHHHhhhhhcccccCccc-chhHHHHH
Q 000202 1242 VSIVEFIDYCI-QEGI-IVGTLANAHKRGHQIVDVLVDASLLLINEVHNSIR-MPGLMKDL 1299 (1866)
Q Consensus 1242 i~~~~Li~~W~-aeG~-i~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~-mhdlv~dl 1299 (1866)
+...+....- ..|. + .......+++.|.+.+++...+ +.|+ .|.++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~------~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEI------SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp -CHHHHHHHHHHHHCSCC------CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred -CHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 4444433221 1231 1 1234567899999999987543 4555 46777764
No 116
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.4e-11 Score=152.66 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=173.7
Q ss_pred ccchhhHHHHHHHHHh-c----c--CCccEEEE--EcCCCchHHHHHHHHhcCcccc---cccc-eEEEEEecCCCCHHH
Q 000202 979 AVNYTQRNVRKIFRYV-N----D--VTASKIGV--YGVGGIGKTAALKALISYPEVK---VMFH-VIIWVTVSRYWNTRK 1045 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l-~----~--~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~ 1045 (1866)
.+.||+++++++...+ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+.+....+...
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHH
Confidence 3667888888887777 3 2 23456666 9999999999999996532221 0122 356777767778899
Q ss_pred HHHHHHHHhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--------cchhhhcCCC---CCCC--CCcEE
Q 000202 1046 IQKQVLRQLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ--------IDLEAVGIPV---PGSE--NGSKI 1109 (1866)
Q Consensus 1046 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l---~~~~--~gs~I 1109 (1866)
+...++.+++..... ..+..++...+.+.+. +++++|||||++.. ..+..+...+ +..+ ....|
T Consensus 103 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~l 182 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGF 182 (412)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEE
Confidence 999999998764322 2234556666776664 78999999999763 2232222222 1112 33457
Q ss_pred EEccCChhhhccC---------CCCcEEEecCCChHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHcC------CChH
Q 000202 1110 FMASRELDVCRNM---------DVNMVVKLETLSMKDAWELFCKEV---GGIIQSPDIHLYARAIVKGCC------GLPL 1171 (1866)
Q Consensus 1110 ivTTR~~~v~~~~---------~~~~~~~l~~L~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~I~~~c~------GlPL 1171 (1866)
|+||+...+.... .....+.+++|+.++++++|...+ +.... --.+....|++.|+ |.|.
T Consensus 183 I~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 183 LLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV--WEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS--CCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHhccCCCcHH
Confidence 8788755432110 112239999999999999997654 22111 11345677889999 9997
Q ss_pred HHHHHHHHhh------CC--CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCC--CCcc
Q 000202 1172 LTIVTAKALA------GE--RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP--EDRE 1241 (1866)
Q Consensus 1172 Ai~~~g~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp--~~~~ 1241 (1866)
.+..+..... +. -+.+.+..+...... ...+.-++..||++ .+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCC
Confidence 6655543221 10 122333332221100 12334456788876 688888788653 3345
Q ss_pred ccHHHHHHHHH--H---cCccchhhHhHHHhHHHHHHHHHHhhhhhccc----ccCcccchhHH
Q 000202 1242 VSIVEFIDYCI--Q---EGIIVGTLANAHKRGHQIVDVLVDASLLLINE----VHNSIRMPGLM 1296 (1866)
Q Consensus 1242 i~~~~Li~~W~--a---eG~i~~~~~~~~~~~~~~~~~L~~~sll~~~~----~~~~~~mhdlv 1296 (1866)
+...++...+. + .|.- .-.......+++.|.+.+++.... ..+.+++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVK----PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCC----CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCCC----CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 66665554442 1 1210 001234567899999999997532 22345555443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=8.2e-11 Score=133.26 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=96.2
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCccc-ChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVI-PPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~-p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++++|.+..+|... ...++.|+|++| .+..+ |..+|..+++|++|+|++|.++.+|. .+.++.+|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 47888888888888422 346788999888 45555 45666888999999999999887765 7888999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 87766666788899999999999988877 55677788888877753
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=9e-11 Score=139.25 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=129.9
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++| .+..+|. +..+++|++|+|++|.+..++ .++.
T Consensus 57 ~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~i~~~~-~l~~ 132 (291)
T 1h6t_A 57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVH 132 (291)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGG
T ss_pred CcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCcCCCCh-hhcC
Confidence 34445567788999999999999998888889999999999988 5666654 588999999999999999874 6899
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
+++|++|+|++|.+.. + ..++++++|++|++++|.++.++. +..+++|++|+++++. + ..+ ..+
T Consensus 133 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i-----~~l-------~~l 196 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-I-----SDL-------RAL 196 (291)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C-----CBC-------GGG
T ss_pred CCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-C-----CCC-------hhh
Confidence 9999999999998654 4 579999999999999999999876 9999999999997642 1 111 136
Q ss_pred hccccCcEeecccCC
Q 000202 1524 SRLQALETLSIDVHP 1538 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~ 1538 (1866)
..+++|+.|+++.++
T Consensus 197 ~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 197 AGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCTTCSEEEEEEEE
T ss_pred ccCCCCCEEECcCCc
Confidence 789999999998643
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=1e-10 Score=132.53 Aligned_cols=124 Identities=21% Similarity=0.338 Sum_probs=69.7
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++.+|.+..++ .+..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 45566666666665554 2445566666666655 34444444445566666666666666655543 35566666666
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTV 1499 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 1499 (1866)
|++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 666665555555566666666666666666555432 455555555544
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=5.6e-11 Score=132.23 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhh
Q 000202 1363 AGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETL 1441 (1866)
Q Consensus 1363 ~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i 1441 (1866)
+.+...+.+..+++|+.|++++|.+..++.+..+++|+.|++++|......|.. ++.+++|++|+|++|.+.. .|..+
T Consensus 54 n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 54 INVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp SCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHH
T ss_pred CCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHH
Confidence 344444567788999999999999988888889999999999988543334554 4789999999999999984 78889
Q ss_pred cCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceecccc
Q 000202 1442 VNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1442 ~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+.+++|++|+|++|..++.+| .+.++++|++|++++|.++.+| .+..+++|++|++.+
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 999999999999998677777 7999999999999999999988 789999999998864
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=9.2e-11 Score=136.82 Aligned_cols=157 Identities=22% Similarity=0.319 Sum_probs=130.4
Q ss_pred ccCCCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh
Q 000202 1361 ARAGLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET 1440 (1866)
Q Consensus 1361 ~~~~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~ 1440 (1866)
....+...+....+++++.|++.+|.+..++.+..+++|+.|+|++| .+..+++ +..+++|++|+|++|.++.+|..
T Consensus 27 ~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 27 GKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp TCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCCTTC
T ss_pred cCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCcCcc
Confidence 33445555567788999999999999999998889999999999988 6777777 58899999999999999998864
Q ss_pred hcCCCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCCh
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISS 1520 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 1520 (1866)
.. .+|++|+|++|.+.+ +| .++++++|++|++++|.++.+| .++.+++|++|+++++.- ..+
T Consensus 104 ~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i------~~~------- 165 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI------TNT------- 165 (263)
T ss_dssp CC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC------CBC-------
T ss_pred cc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC------cch-------
Confidence 44 999999999998654 54 6999999999999999999997 799999999999976421 111
Q ss_pred hhhhccccCcEeecccCC
Q 000202 1521 DILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1521 ~~l~~L~~L~~L~l~~~~ 1538 (1866)
..+..+++|+.|+++.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 236789999999998643
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=9e-11 Score=132.93 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=112.5
Q ss_pred ccCcEEEccCCCCCCCCC---CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG---RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~---~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
..++.|++++|.+..++. +..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 456899999999998742 578999999999988 6788888777999999999999999998875 58999999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
+|++|.+.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|++.+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 9999998888899999999999999999999988 67799999999998864
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.2e-10 Score=132.87 Aligned_cols=125 Identities=29% Similarity=0.438 Sum_probs=112.1
Q ss_pred ccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEe
Q 000202 1375 THAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILI 1451 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~ 1451 (1866)
++++.|++++|.+..++ .+..+++|+.|+|++| .+..+|...|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 78999999999999875 3678999999999988 57889988889999999999999999998865 68999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
|++|.+ ..+|..+.++++|++|++++|.++.+|.. +..+++|++|++.+
T Consensus 119 Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 119 MCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999985 58999999999999999999999998754 88899999988854
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=8e-11 Score=132.33 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=127.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++.++.+..+|.. ..++|+.|++++| .+..+++..++.+++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4677888888888742 3568999999988 67788888888999999999999999988865 6899999999999999
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
+....|..++++++|++|++++|.++.+|.. ++++++|++|++.++. +..++ ...+..+++|+.|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~-----~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ------LKSVP-----DGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CSCCC-----TTTTTTCTTCCEEECC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc------cceeC-----HHHhccCCCccEEEec
Confidence 7655555679999999999999999988765 7899999999986532 11222 2235678888888887
Q ss_pred cCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
.++. ...+++|+.|+++.|.
T Consensus 157 ~N~~--------------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 157 DNPW--------------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp SCCB--------------CCCTTTTHHHHHHHHH
T ss_pred CCCe--------------ecCCCCHHHHHHHHHh
Confidence 5431 1345566666665544
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.16 E-value=7.8e-12 Score=155.50 Aligned_cols=83 Identities=23% Similarity=0.140 Sum_probs=41.6
Q ss_pred hcCCCCcEEEccCCCCCC-----CChhhcCCCCCcEEeccccc---CcccCCccc-------cCCCCCcEEEccCCCCCc
Q 000202 1419 ELMTSLKVLNLSKTRIKS-----LPETLVNLKCLQILILRDCD---FLFVLPPEV-------GSLECLEVLDLRGTEIKM 1483 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~---~~~~lP~~i-------~~L~~L~~L~l~~~~i~~ 1483 (1866)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|. +.+.+|..+ .++++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 345555555555555542 22334455555555555542 122333333 455556666666555553
Q ss_pred -----CChhhcCCCccceecccc
Q 000202 1484 -----LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1484 -----lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|..+.++++|++|++++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHHhCCCCCEEECcC
Confidence 455555555555555543
No 126
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.14 E-value=8.8e-11 Score=143.90 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=122.9
Q ss_pred ccccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc--ccccHH
Q 000202 179 DTFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE--ETGRLD 256 (1866)
Q Consensus 179 ~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 256 (1866)
+.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+....... ......
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHH
Confidence 344556678999999999999999753 5899999999999999999998751 45554322100 001223
Q ss_pred HHHHHHHHHHhc---------------ccccc-Cccchh--HHHHHHHhhc-CcEEEEEecCCCHH---------HHHHH
Q 000202 257 DLRKELLSKLLN---------------DRNVK-NFQNIS--VNFQSKRLAR-KKVLIVFDDVNHPR---------QIELL 308 (1866)
Q Consensus 257 ~l~~~ll~~~~~---------------~~~~~-~~~~~~--~~~l~~~L~~-k~~LlVlDdv~~~~---------~~~~l 308 (1866)
.+...+...+.. ..... ...... ...+.+..+. ++++|||||++... .+..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 344444333211 00000 001111 1233333332 49999999997532 23333
Q ss_pred hhccCCCCCCCEEEEEccccchhcc-----------Ccc-ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHH
Q 000202 309 IGRLDRFASGSQVIITTRDKQVLTN-----------CEV-DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKAL 376 (1866)
Q Consensus 309 ~~~~~~~~~gs~IiiTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 376 (1866)
...... .++.++|+|++...+... .+. ...+++.+|+.+|+.+++.......... ...+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 222211 247889999887543111 111 3478999999999999998643111111 1235678999
Q ss_pred HHhCCCcceeeeecccc
Q 000202 377 KYAQGVPLALKVLGCYL 393 (1866)
Q Consensus 377 ~~~~GlPLAl~~~g~~L 393 (1866)
+.++|+|+++..++..+
T Consensus 233 ~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 99999999999887654
No 127
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=1.3e-10 Score=151.05 Aligned_cols=155 Identities=23% Similarity=0.290 Sum_probs=117.5
Q ss_pred CCCCCCCccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcC
Q 000202 1364 GLTEPPSEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVN 1443 (1866)
Q Consensus 1364 ~~~~~~~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~ 1443 (1866)
.+...+.+..+++|+.|++++|.+..++.+..+++|+.|+|++| .+..+| . +..+++|++|+|++|.+..+| .+..
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 129 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN-KIKDLS-S-LKDLKKLKSLSLEHNGISDIN-GLVH 129 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCT-T-STTCTTCCEEECTTSCCCCCG-GGGG
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC-CCCCCh-h-hccCCCCCEEEecCCCCCCCc-cccC
Confidence 34444557778888888888888888877788888888888877 555655 2 477888888888888888764 5888
Q ss_pred CCCCcEEecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhh
Q 000202 1444 LKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDIL 1523 (1866)
Q Consensus 1444 L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l 1523 (1866)
|++|+.|+|++|.+.. + ..++.|++|+.|+|++|.+..++. +..+++|++|+++++. +. .+ ..+
T Consensus 130 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~-----~l-------~~l 193 (605)
T 1m9s_A 130 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-IS-----DL-------RAL 193 (605)
T ss_dssp CTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CC-----BC-------GGG
T ss_pred CCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CC-----CC-------hHH
Confidence 8888888888888554 3 578888888888888888887766 8888888888886642 11 11 136
Q ss_pred hccccCcEeecccCC
Q 000202 1524 SRLQALETLSIDVHP 1538 (1866)
Q Consensus 1524 ~~L~~L~~L~l~~~~ 1538 (1866)
..|++|+.|+++.+.
T Consensus 194 ~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 194 AGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCSEEECCSEE
T ss_pred ccCCCCCEEEccCCc
Confidence 678888888887543
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=3.5e-10 Score=145.33 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=127.6
Q ss_pred ccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEeccc
Q 000202 1375 THAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRD 1454 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 1454 (1866)
++|+.|++++|.+..+| ..+++|+.|+|++| .+..+|. + .. +|++|+|++|.++.+|. .+++|++|+|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 67999999999999998 66899999999988 5666887 4 33 89999999999999988 689999999999
Q ss_pred ccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1455 CDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1455 ~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
|.+. .+|. .+++|++|++++|.++.+|. +. ++|++|+++++. +..+|. +........+.|+.|++
T Consensus 150 N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~------L~~lp~--~~~~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 150 NQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL------LESLPA--VPVRNHHSEETEIFFRC 214 (571)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC------CSSCCC--CC--------CCEEEEC
T ss_pred CccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC------CCchhh--HHHhhhcccccceEEec
Confidence 9865 4776 57899999999999999998 66 899999987642 223333 21111223344599999
Q ss_pred ccCCCCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
+.|. ...++..+..+++|+.|+++.|.+...
T Consensus 215 s~N~--------l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 215 RENR--------ITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSC--------CCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCc--------ceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 8543 334677788899999999999998653
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=6.4e-11 Score=129.14 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=103.1
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCC-cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhh-cCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCP-NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETL-VNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i-~~L~~L 1447 (1866)
......+++.|++.+|.+..+|.+..+. +|+.|++++| .+..+ + .++.+++|++|+|++|.++.+|+.+ +.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcc-c-ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3455678889999999988888766655 8999999887 45555 2 3477888999999999988888655 888999
Q ss_pred cEEecccccCcccCCc--cccCCCCCcEEEccCCCCCcCChh----hcCCCccceeccccc
Q 000202 1448 QILILRDCDFLFVLPP--EVGSLECLEVLDLRGTEIKMLPKE----IGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~--~i~~L~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~ 1502 (1866)
++|+|++|.+ +.+|. .++++++|++|++++|.+..+|.. ++.+++|++|++..+
T Consensus 91 ~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999998885 66776 788888999999999988888875 888888888887653
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.3e-10 Score=142.60 Aligned_cols=178 Identities=21% Similarity=0.254 Sum_probs=111.4
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHh-cCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFE-LMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~-~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++.++.+..+|.. -.+.++.|+|++| .+..++...+. .+++|++|+|++|.|..+| ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4677777777777742 1245777888776 56666666655 6778888888888777666 45777788888888887
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeec
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSI 1534 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l 1534 (1866)
.+....|..+.++.+|++|+|++|.|+.+ |..+..+++|++|+++++. +..++...+. .+..+++|+.|++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~------l~~l~~~~~~--~~~~l~~L~~L~L 170 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ------ISRFPVELIK--DGNKLPKLMLLDL 170 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCSCCGGGTC------CTTCCEEEC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc------CCeeCHHHhc--CcccCCcCCEEEC
Confidence 76555555677778888888888877766 4557777778877775431 1122211100 0145777777777
Q ss_pred ccCCCCCccccccccccccccCCCC--CCEEEeecCCccc
Q 000202 1535 DVHPGDKRWDKDVKIVITEVSGLTK--LSSLSFHFPEIEC 1572 (1866)
Q Consensus 1535 ~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~~ 1572 (1866)
+.+.... .....+..++. |+.|+++.|.+.+
T Consensus 171 ~~N~l~~-------l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 171 SSNKLKK-------LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCCC-------CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCCc-------cCHHHhhhccHhhcceEEecCCCccC
Confidence 7433221 11233445554 4678888877654
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=1.3e-10 Score=125.69 Aligned_cols=125 Identities=26% Similarity=0.247 Sum_probs=99.3
Q ss_pred ccCcEEEccCCCCC--CCCCC-CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQ--TLPGR-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~--~l~~~-~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~L 1450 (1866)
++++.|++.+|.+. .+|.. ..+++|+.|++++|. +..+ ..+..+++|++|+|++|.+.. +|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67888999998887 77754 678889999998874 5555 334778889999999998886 77777778899999
Q ss_pred ecccccCcccCC--ccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceecccccc
Q 000202 1451 ILRDCDFLFVLP--PEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVFFFG 1503 (1866)
Q Consensus 1451 ~L~~~~~~~~lP--~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~ 1503 (1866)
+|++|.+ ..+| ..++.+++|++|++++|.++.+|. .+..+++|++|++..+.
T Consensus 101 ~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 101 NLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred eccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 9988875 4444 678888889999999988888876 68888888888886643
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=1.1e-10 Score=123.47 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=94.8
Q ss_pred cccCcEEEccCCCCC--CCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhcCCCCCcE
Q 000202 1374 WTHAKMIFFMDNDLQ--TLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLVNLKCLQI 1449 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~--~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~~L~~L~~ 1449 (1866)
.++++.|++++|.+. .+|. +..+++|+.|++++| .+..+ ..++.+++|++|+|++|.+.. +|..++.+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 367888888888887 6774 367888888888877 45555 334778888888888888886 7777777888888
Q ss_pred EecccccCccc-CCccccCCCCCcEEEccCCCCCcCCh----hhcCCCccceeccc
Q 000202 1450 LILRDCDFLFV-LPPEVGSLECLEVLDLRGTEIKMLPK----EIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1450 L~L~~~~~~~~-lP~~i~~L~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~ 1500 (1866)
|++++|.+.+. .|..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888885442 23678888888888888888887765 57788888888764
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.11 E-value=5.7e-11 Score=144.66 Aligned_cols=180 Identities=17% Similarity=0.107 Sum_probs=136.7
Q ss_pred ccCcEEEccCCCCCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCC-CCChhhcCCCCCcEEec
Q 000202 1375 THAKMIFFMDNDLQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIK-SLPETLVNLKCLQILIL 1452 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~L 1452 (1866)
++++.+++.+|.+...+ ....+++|+.|++++|.....-.+.++..+++|++|+|++|.+. ..|..++.+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 57888999998887543 56688999999999885322313344588999999999999988 67888999999999999
Q ss_pred ccccCcc--cCCccccCCCCCcEEEccCC-CCCc--CChhhcCCC-ccceecccccc-ccCCCccccCCCCCCChhhhhc
Q 000202 1453 RDCDFLF--VLPPEVGSLECLEVLDLRGT-EIKM--LPKEIGKLT-SLRYLTVFFFG-SMYKSEYIKLPPDLISSDILSR 1525 (1866)
Q Consensus 1453 ~~~~~~~--~lP~~i~~L~~L~~L~l~~~-~i~~--lp~~i~~L~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~l~~ 1525 (1866)
++|..+. .+|..+.++++|++|++++| .++. +|..+++++ +|++|+++++. ..+.. .+ ...+..
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~---~l------~~~~~~ 220 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DL------STLVRR 220 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HH------HHHHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH---HH------HHHHhh
Confidence 9994343 36777889999999999999 8884 688889999 99999998764 22111 11 123667
Q ss_pred cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCC
Q 000202 1526 LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPE 1569 (1866)
Q Consensus 1526 L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 1569 (1866)
+++|+.|+++.+.... ...+..+..+++|+.|+++.|.
T Consensus 221 ~~~L~~L~l~~~~~l~------~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLK------NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCC------GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCC------HHHHHHHhCCCCCCEeeCCCCC
Confidence 8999999998654211 1245567888999999998885
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=3.3e-10 Score=139.02 Aligned_cols=152 Identities=26% Similarity=0.371 Sum_probs=125.2
Q ss_pred ccCcEEEccCCCCCCCCC--CC-CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEE
Q 000202 1375 THAKMIFFMDNDLQTLPG--RP-SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQIL 1450 (1866)
Q Consensus 1375 ~~l~~l~l~~~~l~~l~~--~~-~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L 1450 (1866)
..++.|++++|.+..++. +. .+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+.+|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 458899999999998774 44 8999999999988 6888888777999999999999999998875 68999999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCChhh----cCCCccceeccccccccCCCccccCCCCCCChhhhhcc
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEI----GKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRL 1526 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L 1526 (1866)
+|++|.+....|..+.++++|++|+|++|.++.+|..+ ..+++|++|++++.. +.. ++...+..+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~------l~~-----l~~~~~~~l 186 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK------LKK-----LPLTDLQKL 186 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC------CCC-----CCHHHHHHS
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC------CCc-----cCHHHhhhc
Confidence 99999988888889999999999999999999999875 679999999986531 111 233456667
Q ss_pred cc--CcEeecccCC
Q 000202 1527 QA--LETLSIDVHP 1538 (1866)
Q Consensus 1527 ~~--L~~L~l~~~~ 1538 (1866)
+. |+.|+++.++
T Consensus 187 ~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 187 PAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHTTEECCSSC
T ss_pred cHhhcceEEecCCC
Confidence 65 4778887654
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=1.2e-10 Score=143.30 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=117.9
Q ss_pred cccccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccc--ccccHHH
Q 000202 180 TFQSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAE--ETGRLDD 257 (1866)
Q Consensus 180 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~ 257 (1866)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||||+++++++.... .+|+... ... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCCHHH
Confidence 344456789999999999999 764 589999999999999999999876432 4555432 210 0011122
Q ss_pred HHHHHHHHHh-------------ccc---ccc----Cc-----cchhHHHHHHHhhc---CcEEEEEecCCCHH-----H
Q 000202 258 LRKELLSKLL-------------NDR---NVK----NF-----QNISVNFQSKRLAR---KKVLIVFDDVNHPR-----Q 304 (1866)
Q Consensus 258 l~~~ll~~~~-------------~~~---~~~----~~-----~~~~~~~l~~~L~~---k~~LlVlDdv~~~~-----~ 304 (1866)
+...+...+. ... ... .. .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 2222222111 000 000 00 01112223333332 49999999996522 2
Q ss_pred HHHHhhccCCCCCCCEEEEEccccchhcc----------C-cc-ceeeecCCCCHHHHHHHHHhhcCC-CCCCChhHHHH
Q 000202 305 IELLIGRLDRFASGSQVIITTRDKQVLTN----------C-EV-DHIYQMKELVHADAHKLFTQCAFR-GDHLDAGYTEL 371 (1866)
Q Consensus 305 ~~~l~~~~~~~~~gs~IiiTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~ 371 (1866)
+..++..+....++.++|+|+|....... . +. ...+++.+|+.+|+.+++...... +..+..
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----- 231 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----- 231 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----
Confidence 22222211111246789999997643210 1 11 357899999999999999864311 112221
Q ss_pred HHHHHHHhCCCcceeeeeccccc
Q 000202 372 AHKALKYAQGVPLALKVLGCYLC 394 (1866)
Q Consensus 372 ~~~i~~~~~GlPLAl~~~g~~L~ 394 (1866)
..+|++.++|+|+++..++..+.
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHc
Confidence 17899999999999999887653
No 136
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=136.60 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=136.3
Q ss_pred cccCcEEEccCCCCCC-CCC-C--CCCCcccEEEccCCcCCcccC---hhHHhcCCCCcEEEccCCCCCCCC-hhhcCCC
Q 000202 1374 WTHAKMIFFMDNDLQT-LPG-R--PSCPNLLTLFLQRNCRLRVIP---PSFFELMTSLKVLNLSKTRIKSLP-ETLVNLK 1445 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~-l~~-~--~~~~~L~~L~L~~~~~l~~~p---~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~ 1445 (1866)
+++++.|++++|.+.. .|. + ..+++|++|+|++|......+ ...+..+++|++|+|++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568999999999874 343 3 678999999999885443333 222356899999999999998766 6788999
Q ss_pred CCcEEecccccCccc--C--CccccCCCCCcEEEccCCCCCcCChh----hcCCCccceeccccccccCCCccccC-CCC
Q 000202 1446 CLQILILRDCDFLFV--L--PPEVGSLECLEVLDLRGTEIKMLPKE----IGKLTSLRYLTVFFFGSMYKSEYIKL-PPD 1516 (1866)
Q Consensus 1446 ~L~~L~L~~~~~~~~--l--P~~i~~L~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~~~~~~~~~~l-~~~ 1516 (1866)
+|++|+|++|.+.+. + +..++++++|++|++++|.++.+|.. ++.+++|++|+++++.- ... |..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l------~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL------RATVNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC------CCCCCSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC------Cccchhh
Confidence 999999999986542 2 23347889999999999999877653 57889999999876431 111 111
Q ss_pred CCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1517 LISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1517 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
. ..+..+++|+.|+++.+... .++..+. ++|+.|+++.|.+..++. ....++|+.|.+
T Consensus 244 ~---~~~~~~~~L~~L~Ls~N~l~--------~lp~~~~--~~L~~L~Ls~N~l~~~~~-----~~~l~~L~~L~L 301 (310)
T 4glp_A 244 A---PRCMWSSALNSLNLSFAGLE--------QVPKGLP--AKLRVLDLSSNRLNRAPQ-----PDELPEVDNLTL 301 (310)
T ss_dssp C---SSCCCCTTCCCEECCSSCCC--------SCCSCCC--SCCSCEECCSCCCCSCCC-----TTSCCCCSCEEC
T ss_pred H---HhccCcCcCCEEECCCCCCC--------chhhhhc--CCCCEEECCCCcCCCCch-----hhhCCCccEEEC
Confidence 0 01223468999999854432 3444443 789999999999886532 123456666665
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.08 E-value=1.2e-10 Score=144.81 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=137.2
Q ss_pred ccccccCcEEEccCCCCCCC-----C-CCCCCCcccEEEccCCc--CC-cccChhH------HhcCCCCcEEEccCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTL-----P-GRPSCPNLLTLFLQRNC--RL-RVIPPSF------FELMTSLKVLNLSKTRIK 1435 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l-----~-~~~~~~~L~~L~L~~~~--~l-~~~p~~~------~~~l~~L~~L~Ls~~~i~ 1435 (1866)
+..+++++.|++++|.+... + .+..+++|+.|+|++|. .+ ..+|..+ +..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567899999999988742 2 35678999999999862 12 2344443 367899999999999988
Q ss_pred C-----CChhhcCCCCCcEEecccccCcccC----CccccCC---------CCCcEEEccCCCCC--cCC---hhhcCCC
Q 000202 1436 S-----LPETLVNLKCLQILILRDCDFLFVL----PPEVGSL---------ECLEVLDLRGTEIK--MLP---KEIGKLT 1492 (1866)
Q Consensus 1436 ~-----lp~~i~~L~~L~~L~L~~~~~~~~l----P~~i~~L---------~~L~~L~l~~~~i~--~lp---~~i~~L~ 1492 (1866)
. +|..+..+++|++|+|++|.+.... +..+..+ ++|++|++++|.+. .+| ..+.+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 7888999999999999999875333 3334444 89999999999987 455 4678899
Q ss_pred ccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1493 SLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1493 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+|++|++.++.- .......+ ....+..+++|+.|+++.+.... .....++..+..+++|+.|+++.|.+..
T Consensus 188 ~L~~L~L~~n~l-~~~g~~~l-----~~~~l~~~~~L~~L~Ls~n~l~~---~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 188 LLHTVKMVQNGI-RPEGIEHL-----LLEGLAYCQELKVLDLQDNTFTH---LGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSSCC-CHHHHHHH-----HHTTGGGCTTCCEEECCSSCCHH---HHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred CcCEEECcCCCC-CHhHHHHH-----HHHHhhcCCCccEEECcCCCCCc---HHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 999999876521 10000000 00136788999999998654210 0113356677888999999999998775
Q ss_pred h
Q 000202 1573 V 1573 (1866)
Q Consensus 1573 ~ 1573 (1866)
.
T Consensus 259 ~ 259 (386)
T 2ca6_A 259 R 259 (386)
T ss_dssp H
T ss_pred h
Confidence 4
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=2.4e-09 Score=132.96 Aligned_cols=236 Identities=17% Similarity=0.114 Sum_probs=144.1
Q ss_pred CCceeehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-------cc-eEEEEeeccccccc-c
Q 000202 186 KDLIGVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-------EG-SYFACNVRAAEETG-R 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-------~~-~~~~~~~~~~~~~~-~ 254 (1866)
..|+||+.+++++..++.. .....+.+.|+|++|+||||||+++++.....+ .. .+|+. ... .. .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~---~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE---VGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH---HCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc---CCCC
Confidence 6899999999999988864 233456899999999999999999999764432 22 23332 211 12 3
Q ss_pred HHHHHHHHHHHHhccccccCcc--chhHHHHHHHhhcCcEEEEEecCCCHH------H-HHHHhhccCCCCCCCEEEEEc
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQ--NISVNFQSKRLARKKVLIVFDDVNHPR------Q-IELLIGRLDRFASGSQVIITT 325 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~--~~~~~~l~~~L~~k~~LlVlDdv~~~~------~-~~~l~~~~~~~~~gs~IiiTT 325 (1866)
...+..+++..+.+........ ......+.+.++.++.+|||||++... . +..+... . .+..||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 4556666666664332211111 111245556676666699999997532 2 3333332 2 678899999
Q ss_pred cccchhccC------ccceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcc-eeeeeccc
Q 000202 326 RDKQVLTNC------EVDHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPL-ALKVLGCY 392 (1866)
Q Consensus 326 R~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~~g~~ 392 (1866)
+........ .....+++++++.++..++|...+ +...... .+....+++.++ |.|. |+.++-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 876322111 112389999999999999998874 3322222 244667777777 8876 33332221
Q ss_pred c--c----CCCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHH
Q 000202 393 L--C----GRSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 393 L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~ 439 (1866)
. . .-+.+.+..++..... ..+..+++.|++.++..+..+.
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~ 294 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLI 294 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 2356777777665532 3355566777777766555444
No 139
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.07 E-value=2.6e-10 Score=112.50 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=56.1
Q ss_pred cchhcchhhHHHHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHhhhhhhhhHHHHHhhhhh
Q 000202 566 ARAYWNHTDLKQLRLKLAEVRYLLQDAVRCG-ADQNLNIDTWFKDLRGLTYEVDELIDNWEQSEI 629 (1866)
Q Consensus 566 ~~~l~~~~~l~~l~~~L~~i~a~L~dAe~~~-~~~~~~v~~Wl~qLrd~ayd~eD~lD~~~~~~~ 629 (1866)
....+...++++|+++|++|++||.||++++ +..+..++.|++|||++|||+|||||+|.+...
T Consensus 19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456668899999999999999999998763 447889999999999999999999999988764
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=1e-09 Score=121.25 Aligned_cols=121 Identities=24% Similarity=0.437 Sum_probs=98.1
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|... .++|+.|++++| .+..+|.. +..+++|++|+|++|.|+.++ ..+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56888888888888532 368899999887 56778854 478899999999999998776 468889999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
+....|..++++++|++|+|++|.++.+|.. +..+++|++|++.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 7776677888999999999999999888764 77788888887753
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.04 E-value=6.5e-10 Score=122.93 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=102.4
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChh-HHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPS-FFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~-~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~ 1455 (1866)
+.+++++|.+..+|... ..+|+.|++++| .+..+++. +++.+++|++|+|++|.++.+ |..++.+.+|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 67889999999888532 238999999988 56666653 568899999999999999877 678999999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcC-ChhhcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKML-PKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+ |..++.+++|++|++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 98877777799999999999999999866 66788899999988754
No 142
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.04 E-value=1.6e-09 Score=139.20 Aligned_cols=171 Identities=24% Similarity=0.299 Sum_probs=130.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
+++.|++++|.+..+|... +++|+.|+|++| .+..+| +.+++|++|+|++|.++.+|. +++ +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 7899999999999988633 489999999988 577888 347999999999999999998 766 9999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
.+.+ +|. .+++|++|++++|.++.+|. .+++|++|+++++. +..+|. +. ++|+.|+++
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~------L~~lp~-------l~--~~L~~L~Ls 188 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ------LTFLPE-------LP--ESLEALDVS 188 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC------CSCCCC-------CC--TTCCEEECC
T ss_pred cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC------CCCcch-------hh--CCCCEEECc
Confidence 8655 887 68999999999999999997 67899999997642 222333 22 789999998
Q ss_pred cCCCCCccccccccccccccCCCCC-------CEEEeecCCccchHHhhccCccccCCcceeEE
Q 000202 1536 VHPGDKRWDKDVKIVITEVSGLTKL-------SSLSFHFPEIECVAEFLKGSAWNNQQLTEFKF 1592 (1866)
Q Consensus 1536 ~~~~~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~l~~~~~~~~~~~~~~~~L~~l~l 1592 (1866)
.|... .++. +.. +| +.|+++.|.+..++..+.. .++|+.|.+
T Consensus 189 ~N~L~--------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~----l~~L~~L~L 237 (571)
T 3cvr_A 189 TNLLE--------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILS----LDPTCTIIL 237 (571)
T ss_dssp SSCCS--------SCCC-CC----------CCEEEECCSSCCCCCCGGGGG----SCTTEEEEC
T ss_pred CCCCC--------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhc----CCCCCEEEe
Confidence 65422 2333 333 56 9999999998877654332 345555554
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=4.6e-10 Score=145.22 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=92.7
Q ss_pred cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccc
Q 000202 1376 HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDC 1455 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 1455 (1866)
.++.|++++|.+..+|.+..+++|+.|+|++| .+..+|..+ +.+++|++|+|++|.++.+| .+++|++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcc-cccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 46788888888888888778888888888877 566777755 67888888888888888887 7888888888888888
Q ss_pred cCcccC-CccccCCCCCcEEEccCCCCCcCChhh----cCCCccceec
Q 000202 1456 DFLFVL-PPEVGSLECLEVLDLRGTEIKMLPKEI----GKLTSLRYLT 1498 (1866)
Q Consensus 1456 ~~~~~l-P~~i~~L~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~ 1498 (1866)
.+.+.. |..+++|++|++|+|++|.++.+|+.+ ..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 866554 788888888888888888887776543 2356666664
No 144
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.01 E-value=3.9e-10 Score=135.35 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=133.2
Q ss_pred cccccCcEEEccCCCCCCC-C-----CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC---CCh--h
Q 000202 1372 EEWTHAKMIFFMDNDLQTL-P-----GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS---LPE--T 1440 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l-~-----~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~---lp~--~ 1440 (1866)
..+++|+.|++++|.+... + .+..+++|+.|+|++| .+..+++..++.+++|++|+|++|.+.. +|. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 6688999999999998852 2 1246889999999988 5677777667889999999999998763 433 3
Q ss_pred hcCCCCCcEEecccccCcccCCc----cccCCCCCcEEEccCCCCCcC-ChhhcCC---CccceeccccccccCCCcccc
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPP----EVGSLECLEVLDLRGTEIKML-PKEIGKL---TSLRYLTVFFFGSMYKSEYIK 1512 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~----~i~~L~~L~~L~l~~~~i~~l-p~~i~~L---~~L~~L~l~~~~~~~~~~~~~ 1512 (1866)
++.+++|++|+|++|.+ ..+|. .++++++|++|++++|.++.+ |..++.+ ++|++|+++++. +..
T Consensus 193 ~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~------l~~ 265 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG------LEQ 265 (310)
T ss_dssp TTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC------CCS
T ss_pred hhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC------CCc
Confidence 46899999999999985 44444 257889999999999999976 8777777 699999987642 223
Q ss_pred CCCCCCChhhhhccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1513 LPPDLISSDILSRLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1513 l~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+|.. + .++|+.|+++.+.... + ..+..+++|+.|+++.|.+..
T Consensus 266 lp~~------~--~~~L~~L~Ls~N~l~~--------~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKG------L--PAKLRVLDLSSNRLNR--------A-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSC------C--CSCCSCEECCSCCCCS--------C-CCTTSCCCCSCEECSSTTTSC
T ss_pred hhhh------h--cCCCCEEECCCCcCCC--------C-chhhhCCCccEEECcCCCCCC
Confidence 3432 1 2689999998765432 2 235778999999999998753
No 145
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.00 E-value=1.1e-09 Score=136.16 Aligned_cols=241 Identities=17% Similarity=0.127 Sum_probs=139.2
Q ss_pred CCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhcccc---ceEEEEeeccccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE---GSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+.. .. ......+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~-~~---~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT-RQ---IDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH-HH---HCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC-CC---CCCHHHHH
Confidence 468999999999999998742 334568999999999999999999997766542 2333331 11 12233444
Q ss_pred HHHHHHHhccccccCccchh-HHHHHHHhh--cCcEEEEEecCCC------HHHHHHHhhccCC-CCCCCEEEEEccccc
Q 000202 260 KELLSKLLNDRNVKNFQNIS-VNFQSKRLA--RKKVLIVFDDVNH------PRQIELLIGRLDR-FASGSQVIITTRDKQ 329 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~-~~~l~~~L~--~k~~LlVlDdv~~------~~~~~~l~~~~~~-~~~gs~IiiTTR~~~ 329 (1866)
..++..+............. ...+.+.+. +++.+||||+++. .+.+..+...... ...+..+|+||++..
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 55544442211100100111 133444443 3589999999964 2334444433321 133566788888664
Q ss_pred hhccCcc-------ceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcceeee-ecccc--
Q 000202 330 VLTNCEV-------DHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPLALKV-LGCYL-- 393 (1866)
Q Consensus 330 v~~~~~~-------~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPLAl~~-~g~~L-- 393 (1866)
....... ...+++++++.++..+++...+ +...... .+....+++.++ |.|..+.. +....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4322211 1478999999999999998754 2222222 445666777777 99884332 22211
Q ss_pred ---cC---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHH
Q 000202 394 ---CG---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLR 439 (1866)
Q Consensus 394 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~ 439 (1866)
.+ -+.+..+.++.... ...+.-++..|+..++..+..++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~ 296 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVV 296 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHH
Confidence 01 24455555555432 23455566778877776555544
No 146
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=6.9e-10 Score=119.93 Aligned_cols=117 Identities=25% Similarity=0.304 Sum_probs=100.9
Q ss_pred CccccccCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC--hhhcCCCCC
Q 000202 1370 SEEEWTHAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP--ETLVNLKCL 1447 (1866)
Q Consensus 1370 ~~~~~~~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp--~~i~~L~~L 1447 (1866)
.+..+++|+.|++++|.+..++.+..+++|+.|++++|. +...++..+..+++|++|+|++|.++.+| ..++.+++|
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCC
T ss_pred HHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCC
Confidence 357789999999999999988778899999999999885 55534455578999999999999999987 789999999
Q ss_pred cEEecccccCcccCC---ccccCCCCCcEEEccCCCCCcCChh
Q 000202 1448 QILILRDCDFLFVLP---PEVGSLECLEVLDLRGTEIKMLPKE 1487 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP---~~i~~L~~L~~L~l~~~~i~~lp~~ 1487 (1866)
++|++++|.+....+ ..+..+++|++|++++|.+.++|..
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 123 KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999998654433 3899999999999999999988864
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=2e-09 Score=117.32 Aligned_cols=123 Identities=27% Similarity=0.365 Sum_probs=101.1
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++.++.+..+|. ...++|+.|++++| .+..+|+..++.+++|++|+|++|.++.+|.. ++.+.+|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567888888888874 23478999999987 57788887778899999999999999988854 688999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCChh-hcCCCccceecccc
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
.+.+..|..++++++|++|++++|.++.+|.. +..+++|++|++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 87655555678899999999999999988876 57788899888854
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.98 E-value=1.2e-09 Score=126.21 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=118.2
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++||+..++.+..++..+. ..+.+.|+|.+|+||||||+++++.....+.....-+ ...... ..+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-REIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HHHh
Confidence 34579999999999999998643 2347899999999999999999987654331110000 000000 0000
Q ss_pred HHHhccc-cccCccchhHHHHHHH--------hhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccchhc
Q 000202 264 SKLLNDR-NVKNFQNISVNFQSKR--------LARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQVLT 332 (1866)
Q Consensus 264 ~~~~~~~-~~~~~~~~~~~~l~~~--------L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~ 332 (1866)
....... ............++.. ..+++.+|||||++ +...++.+...+.....+.++|+||+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000000 0000000001111111 23467999999996 46667777766655566788999987654321
Q ss_pred c-C-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeeecc
Q 000202 333 N-C-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVLGC 391 (1866)
Q Consensus 333 ~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~g~ 391 (1866)
. . .....+++++++.+|..+++...+...... -..+....|++.++|+|..+..+..
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1 123678999999999999998776432211 1245678899999999987765543
No 149
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.96 E-value=8.2e-10 Score=116.63 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=103.5
Q ss_pred CCCcccEEEccCCcCC-cccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1395 SCPNLLTLFLQRNCRL-RVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l-~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
..++|+.|++++|... ..+|.. ++.+++|++|++++|.++.+ ..++.+++|++|+|++|.+.+.+|..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999988533 367764 47899999999999999988 78999999999999999987778888888999999
Q ss_pred EEccCCCCCcCC--hhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecc
Q 000202 1474 LDLRGTEIKMLP--KEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSID 1535 (1866)
Q Consensus 1474 L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~ 1535 (1866)
|++++|.++.+| ..++.+++|++|+++++.- ..++. .....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l------~~~~~--~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV------TNLND--YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG------GGSTT--HHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc------cchHH--HHHHHHHHCCCcccccCC
Confidence 999999999875 7799999999999876421 11111 001346778888888764
No 150
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.96 E-value=2.7e-09 Score=132.67 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=139.1
Q ss_pred CCCceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cc-eEEEEeeccccccccHH
Q 000202 185 SKDLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EG-SYFACNVRAAEETGRLD 256 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~~~~~~~~~~~~~ 256 (1866)
+..|+||+.+++++..++... ....+.+.|+|++|+||||||+++++.....+ .. .+++. .. ......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~---~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-AR---HRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TT---TSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CC---cCCCHH
Confidence 378999999999999998542 33456799999999999999999999765432 21 22332 11 222345
Q ss_pred HHHHHHHHHHhccccccCccchh-HHHHHHHh--hcCcEEEEEecCCCHH----H---HHHHhhccCCC--CCCCEEEEE
Q 000202 257 DLRKELLSKLLNDRNVKNFQNIS-VNFQSKRL--ARKKVLIVFDDVNHPR----Q---IELLIGRLDRF--ASGSQVIIT 324 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~-~~~l~~~L--~~k~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~IiiT 324 (1866)
.+...++..+............. ...+.+.+ .+++.+||||+++... . +..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 56666666664322211110111 13344444 3468899999998533 2 22223222211 446678888
Q ss_pred ccccchhccCc------c-ceeeecCCCCHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhC---CCcc-eeeeec
Q 000202 325 TRDKQVLTNCE------V-DHIYQMKELVHADAHKLFTQCA---FRGDHLDAGYTELAHKALKYAQ---GVPL-ALKVLG 390 (1866)
Q Consensus 325 TR~~~v~~~~~------~-~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---GlPL-Al~~~g 390 (1866)
|+......... . ...+.+++++.++..+++...+ +...... .+....++++++ |.|- |+.++.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 87763322111 1 1478999999999999998764 2222222 234667788887 9993 333222
Q ss_pred cccc-----C---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHH
Q 000202 391 CYLC-----G---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLL 438 (1866)
Q Consensus 391 ~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l 438 (1866)
.... + -+.+.+..++.... ...+.-++..|+.+++..+..+
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~ 299 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSI 299 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHH
Confidence 2111 1 25566666665542 1234455677877776554433
No 151
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=5.9e-10 Score=137.01 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=97.7
Q ss_pred cCcEEEccCCCCCCCCC------CCCCC-cccEEEccCCcCCcccChhHHhcC-----CCCcEEEccCCCCCCCC-hh--
Q 000202 1376 HAKMIFFMDNDLQTLPG------RPSCP-NLLTLFLQRNCRLRVIPPSFFELM-----TSLKVLNLSKTRIKSLP-ET-- 1440 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~------~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l-----~~L~~L~Ls~~~i~~lp-~~-- 1440 (1866)
+++.|++++|.+...+. +..++ +|+.|+|++| .+.......+..+ ++|++|+|++|.+...+ ..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46777777777665542 23455 6777777766 4444433333333 67777777777766433 32
Q ss_pred --hcCC-CCCcEEecccccCcccCCccc----cC-CCCCcEEEccCCCCC-----cCChhhcCCC-ccceeccccccccC
Q 000202 1441 --LVNL-KCLQILILRDCDFLFVLPPEV----GS-LECLEVLDLRGTEIK-----MLPKEIGKLT-SLRYLTVFFFGSMY 1506 (1866)
Q Consensus 1441 --i~~L-~~L~~L~L~~~~~~~~lP~~i----~~-L~~L~~L~l~~~~i~-----~lp~~i~~L~-~L~~L~l~~~~~~~ 1506 (1866)
+..+ ++|++|+|++|.+....+..+ .. .++|++|++++|.++ .++..+..++ +|++|+++++.- .
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-A 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-c
Confidence 3334 677777777777544443333 23 246777777777666 3444455555 677777655321 1
Q ss_pred CCccccCCCCCCChhhhhcc-ccCcEeecccCCCCCccccccccccccccC-CCCCCEEEeecCCccc
Q 000202 1507 KSEYIKLPPDLISSDILSRL-QALETLSIDVHPGDKRWDKDVKIVITEVSG-LTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1507 ~~~~~~l~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~ 1572 (1866)
......+ ...+..+ ++|+.|+++.+.... .....+...+.. .++|+.|+++.|.+..
T Consensus 181 ~~~~~~l------~~~l~~~~~~L~~L~Ls~N~i~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 181 SKNCAEL------AKFLASIPASVTSLDLSANLLGL---KSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GSCHHHH------HHHHHTSCTTCCEEECTTSCGGG---SCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hhhHHHH------HHHHHhCCCCCCEEECCCCCCCh---hHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 0000000 0123334 467777776543211 011112333333 3467777777776654
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=1e-09 Score=146.78 Aligned_cols=105 Identities=27% Similarity=0.295 Sum_probs=57.7
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcE
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEV 1473 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 1473 (1866)
..+++|+.|+|++| .+..+|..++ .+++|++|+|++|.|+.+|..|++|.+|++|+|++|.+. .+|..+++|.+|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 34555555555554 3445555543 455555555555555555555555555555555555533 55555555555555
Q ss_pred EEccCCCCCcCChhhcCCCccceecccc
Q 000202 1474 LDLRGTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1474 L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
|+|++|.|+.+|..|++|++|++|++++
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCC
Confidence 5555555555555555555555555543
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.90 E-value=7.3e-09 Score=117.64 Aligned_cols=184 Identities=10% Similarity=0.084 Sum_probs=114.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|++..++.+..++.... ...+.|+|.+|+|||+||+++++.+........|+..... .......+ ...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 88 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS--DERGIDVV-RHK 88 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT--CTTCHHHH-HHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc--cccChHHH-HHH
Confidence 344679999999999999998653 2238999999999999999999876443322233322211 11111111 111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchhc-cC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~~~ 338 (1866)
+........ ....++.+|||||++. ....+.+...+.....+.++|+||+...... .. ....
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 111111100 0135788999999974 4455556555554566788999987654221 11 1234
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
.+++++++.++..+++...+...... -..+....+++.++|.|..+.
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~ 201 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAI 201 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999998766321111 123567788899999997543
No 154
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.89 E-value=1.4e-09 Score=118.44 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCCCCCCccccc-cCcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh--h
Q 000202 1364 GLTEPPSEEEWT-HAKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE--T 1440 (1866)
Q Consensus 1364 ~~~~~~~~~~~~-~l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~--~ 1440 (1866)
.+...+....+. +|+.|++++|.+..++.+..+++|+.|++++| .+..+|+.+++.+++|++|+|++|.+..+|. .
T Consensus 30 ~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 108 (176)
T 1a9n_A 30 KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDP 108 (176)
T ss_dssp CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGG
T ss_pred CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCCcchhhHh
Confidence 333444455555 99999999999998888899999999999988 6778898888899999999999999999997 8
Q ss_pred hcCCCCCcEEecccccCcccCCcc----ccCCCCCcEEEccCCCCCcC
Q 000202 1441 LVNLKCLQILILRDCDFLFVLPPE----VGSLECLEVLDLRGTEIKML 1484 (1866)
Q Consensus 1441 i~~L~~L~~L~L~~~~~~~~lP~~----i~~L~~L~~L~l~~~~i~~l 1484 (1866)
++.+++|++|++++|.+. .+|.. ++.+++|++||+++|.+.+.
T Consensus 109 l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred hhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999999999964 67775 89999999999999976643
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=3.6e-09 Score=114.67 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=89.0
Q ss_pred cEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEeccccc
Q 000202 1378 KMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDCD 1456 (1866)
Q Consensus 1378 ~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 1456 (1866)
+.+++++|.+..+|... .++|+.|+|++| .+..+++..|+.+++|++|+|++|.++.+|.. +.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 57888889998888533 378999999987 57777776678899999999999999988865 5789999999999998
Q ss_pred CcccCCccccCCCCCcEEEccCCCCCcCChhhcCC
Q 000202 1457 FLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKL 1491 (1866)
Q Consensus 1457 ~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L 1491 (1866)
+....|..++++++|++|+|++|.+...|..+..+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 65443345888999999999999888777655443
No 156
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=5.3e-09 Score=115.58 Aligned_cols=106 Identities=28% Similarity=0.448 Sum_probs=95.7
Q ss_pred cCcEEEccCCCCCCCCC---CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEe
Q 000202 1376 HAKMIFFMDNDLQTLPG---RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILI 1451 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~---~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~ 1451 (1866)
+++.|++++|.+..++. +..+++|+.|+|++| .+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 88999999999998874 678999999999988 5667766666899999999999999998775 589999999999
Q ss_pred cccccCcccCCccccCCCCCcEEEccCCCCC
Q 000202 1452 LRDCDFLFVLPPEVGSLECLEVLDLRGTEIK 1482 (1866)
Q Consensus 1452 L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~ 1482 (1866)
|++|.+.+..|..++.+++|++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999998888999999999999999999887
No 157
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=7.2e-09 Score=114.44 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=85.9
Q ss_pred ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEccC
Q 000202 1399 LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLRG 1478 (1866)
Q Consensus 1399 L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 1478 (1866)
-+++++++| .+..+|..+ .++|++|+|++|.++.+|..+..+.+|++|+|++|.+....|..+.+|++|++|+|++
T Consensus 12 ~~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNK-GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCC-CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 367888876 688888765 3689999999999999999999999999999999998777777899999999999999
Q ss_pred CCCCcCCh-hhcCCCccceecccc
Q 000202 1479 TEIKMLPK-EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1479 ~~i~~lp~-~i~~L~~L~~L~l~~ 1501 (1866)
|.++.+|. .+..+++|++|++.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhCCCCCCCEEECCC
Confidence 99998865 588889999988854
No 158
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=2.4e-09 Score=143.06 Aligned_cols=148 Identities=24% Similarity=0.261 Sum_probs=92.7
Q ss_pred cCcEEEccCCCCCCCCC-CCCCCcccEE-----EccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcE
Q 000202 1376 HAKMIFFMDNDLQTLPG-RPSCPNLLTL-----FLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQI 1449 (1866)
Q Consensus 1376 ~l~~l~l~~~~l~~l~~-~~~~~~L~~L-----~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~ 1449 (1866)
+++.+.+..|.+...+. ......|..+ +++.| .+. +++..+..+.+|++|+|++|.+..+|..+.++.+|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45556666666655442 1222223222 22222 222 5566678899999999999999999999999999999
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccC
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQAL 1529 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L 1529 (1866)
|+|++|.+. .+|..+++|++|++|+|++|.|+.+|..+++|++|++|+++++. +..+|. .++.|++|
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~------l~~lp~------~~~~l~~L 318 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM------VTTLPW------EFGNLCNL 318 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC------CCCCCS------STTSCTTC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC------CCccCh------hhhcCCCc
Confidence 999999865 89999999999999999999999999999999999999997642 123333 26778888
Q ss_pred cEeecccCC
Q 000202 1530 ETLSIDVHP 1538 (1866)
Q Consensus 1530 ~~L~l~~~~ 1538 (1866)
+.|+++.+.
T Consensus 319 ~~L~L~~N~ 327 (727)
T 4b8c_D 319 QFLGVEGNP 327 (727)
T ss_dssp CCEECTTSC
T ss_pred cEEeCCCCc
Confidence 888888654
No 159
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.86 E-value=8.5e-08 Score=118.85 Aligned_cols=280 Identities=14% Similarity=0.035 Sum_probs=164.2
Q ss_pred ccchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCcccc----cc--cceEEEEEecCCC-CHHHHH
Q 000202 979 AVNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVK----VM--FHVIIWVTVSRYW-NTRKIQ 1047 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~~ 1047 (1866)
.+.|++++++++..++ .....+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +...+.
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 3567778877777665 33445689999999999999999996532111 01 2356788877766 888899
Q ss_pred HHHHHHhccCCC--CccCHHHHHHHHHHHhCCCcEEEEEeCCCCccc-------hhhhcCCCCCCCCCcEEEEccCChhh
Q 000202 1048 KQVLRQLSLHCK--DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQID-------LEAVGIPVPGSENGSKIFMASRELDV 1118 (1866)
Q Consensus 1048 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~IivTTR~~~v 1118 (1866)
..++.++..... ...........+.+.+..++.+|||||++.... +..+.... .+..||+||+....
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCch
Confidence 999988843221 122335566777888887777999999976321 22222222 57788989887532
Q ss_pred hccC------CCCcEEEecCCChHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHcC---CChH-HHHHHHHHh--h-
Q 000202 1119 CRNM------DVNMVVKLETLSMKDAWELFCKEVGG----IIQSPDIHLYARAIVKGCC---GLPL-LTIVTAKAL--A- 1181 (1866)
Q Consensus 1119 ~~~~------~~~~~~~l~~L~~~~a~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~---GlPL-Ai~~~g~~L--~- 1181 (1866)
.... .....+.+++++.++..++|...+.. ....+ +....|++.|+ |.|. |+..+-.+. +
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 11238999999999999999987531 11222 33556777777 8887 433333322 2
Q ss_pred --CCCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCCCCccccHHHHHHHHHHcCccch
Q 000202 1182 --GERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFPEDREVSIVEFIDYCIQEGIIVG 1259 (1866)
Q Consensus 1182 --~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp~~~~i~~~~Li~~W~aeG~i~~ 1259 (1866)
..-+.+.+..+++.. ....+.-+++.|+++ .|..+..++....+..+. +......-..|.-
T Consensus 254 ~~~~i~~~~v~~~~~~~-------------~~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~~-- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY-------------EQERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFKQK-- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH-------------HHHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTTCC--
T ss_pred CCCccCHHHHHHHHHHH-------------hcchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcCCC--
Confidence 123455555554331 113455667888865 344444455411101111 1111111112210
Q ss_pred hhHhHHHhHHHHHHHHHHhhhhhcc
Q 000202 1260 TLANAHKRGHQIVDVLVDASLLLIN 1284 (1866)
Q Consensus 1260 ~~~~~~~~~~~~~~~L~~~sll~~~ 1284 (1866)
.........+++.|.+.+++...
T Consensus 317 --~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 --PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --CCCHHHHHHHHHHHHhCCCEEEE
Confidence 01224456788899999999753
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=7.3e-09 Score=133.99 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=90.9
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.|+.|+|++| .+..+|. ++.+++|++|+|++|.++.+|..+++|++|++|+|++|.+.+ +| .+++|++|++|+|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5899999988 6777886 588999999999999999999999999999999999998654 78 89999999999999
Q ss_pred CCCCCcC--ChhhcCCCccceeccccc
Q 000202 1478 GTEIKML--PKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1478 ~~~i~~l--p~~i~~L~~L~~L~l~~~ 1502 (1866)
+|.++.+ |..+++|++|++|+++++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999988 889999999999998653
No 161
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.84 E-value=1.2e-08 Score=111.01 Aligned_cols=112 Identities=24% Similarity=0.290 Sum_probs=96.4
Q ss_pred cccCcEEEccCCCCCCCCC--CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEE
Q 000202 1374 WTHAKMIFFMDNDLQTLPG--RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQIL 1450 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~~--~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L 1450 (1866)
.++++.|++.+|.+..+|. +..+++|+.|++++| .+..+|+..+..+++|++|+|++|.++.+|.. +..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 3689999999999998874 578999999999988 67888888888999999999999999988865 6899999999
Q ss_pred ecccccCcccCCccccCCCCCcEEEccCCCCCcCCh
Q 000202 1451 ILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK 1486 (1866)
Q Consensus 1451 ~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~ 1486 (1866)
+|++|.+.+..+..+.++++|++|++++|.+...+.
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998664444446889999999999998875443
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1e-08 Score=110.75 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=79.8
Q ss_pred CcEEEccCCCCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChh-hcCCCCCcEEecccc
Q 000202 1377 AKMIFFMDNDLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPET-LVNLKCLQILILRDC 1455 (1866)
Q Consensus 1377 l~~l~l~~~~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 1455 (1866)
.+.+++++|.+..+|... .++|+.|+|++| .+..+++..|..+++|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 357888888888887432 377888888877 56667666667788888888888888877754 478888888888888
Q ss_pred cCcccCCccccCCCCCcEEEccCCCCCcCCh
Q 000202 1456 DFLFVLPPEVGSLECLEVLDLRGTEIKMLPK 1486 (1866)
Q Consensus 1456 ~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~ 1486 (1866)
.+.+..|..++++++|++|+|++|.+...+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7655444457788888888888887764443
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.83 E-value=2.9e-08 Score=123.19 Aligned_cols=283 Identities=13% Similarity=0.078 Sum_probs=165.3
Q ss_pred ccchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCccccc---c-cceEEEEEecCCCCHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKV---M-FHVIIWVTVSRYWNTRKIQKQV 1050 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~~~~i 1050 (1866)
.+.|++++++++..++. ....+.+.|+|++|+||||||+.+++...... . --..+|+++....+...+...+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 36678888888888873 24456789999999999999999965321110 0 1245678888878888999999
Q ss_pred HHHhccCCCC-ccCHHHHHHHHHHHh--CCCcEEEEEeCCCCcc----chhhh---cCCCCCC--CCCcEEEEccCChhh
Q 000202 1051 LRQLSLHCKD-RETDAQVAEKLWQVL--NGEKFLLLLDDVWEQI----DLEAV---GIPVPGS--ENGSKIFMASRELDV 1118 (1866)
Q Consensus 1051 ~~~l~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~----~~~~l---~~~l~~~--~~gs~IivTTR~~~v 1118 (1866)
+.+++..... .....+....+.+.+ .+++++||||+++... ..+.+ ....... ..+..+|.||+....
T Consensus 100 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 100 AEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 9999754322 223555566677776 4568999999998632 11222 1111111 345677878776532
Q ss_pred --------hccCCCCcEEEecCCChHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHcC---CChHH-HHHHHHHhh-
Q 000202 1119 --------CRNMDVNMVVKLETLSMKDAWELFCKEVGG----IIQSPDIHLYARAIVKGCC---GLPLL-TIVTAKALA- 1181 (1866)
Q Consensus 1119 --------~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~----~~~~~~~~~~~~~I~~~c~---GlPLA-i~~~g~~L~- 1181 (1866)
...+. ...+.+++++.++..+++...+.. ....++ ....+++.++ |.|-. +.++..+..
T Consensus 180 ~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 180 VENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp SSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 12221 147899999999999999877531 122222 3455777777 99943 333322221
Q ss_pred ----C--CCCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhc-CCCCCccccHHHHHHHHHH-
Q 000202 1182 ----G--ERNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCS-LFPEDREVSIVEFIDYCIQ- 1253 (1866)
Q Consensus 1182 ----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s-~Fp~~~~i~~~~Li~~W~a- 1253 (1866)
+ .-+.+.+..+.... ....+.-++..|+.+ .+..++.++ ++-....+...++.+....
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~-------------~~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEI-------------ERDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHH-------------HHHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHH-------------hhchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 12344444443321 122345567888876 344444344 3432234555544443211
Q ss_pred ---cCccchhhHhHHHhHHHHHHHHHHhhhhhc
Q 000202 1254 ---EGIIVGTLANAHKRGHQIVDVLVDASLLLI 1283 (1866)
Q Consensus 1254 ---eG~i~~~~~~~~~~~~~~~~~L~~~sll~~ 1283 (1866)
.|.- .........+++.|...+++..
T Consensus 322 ~~~~~~~----~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 322 TSTLGLE----HVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHTTCC----CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCC----CCCHHHHHHHHHHHHhCCCeEE
Confidence 2210 1123456678888999998875
No 164
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=4e-09 Score=129.53 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=128.7
Q ss_pred cccc-cCcEEEccCCCCCCCC--CCCC-----CCcccEEEccCCcCCcccChhH----HhcC-CCCcEEEccCCCCCCCC
Q 000202 1372 EEWT-HAKMIFFMDNDLQTLP--GRPS-----CPNLLTLFLQRNCRLRVIPPSF----FELM-TSLKVLNLSKTRIKSLP 1438 (1866)
Q Consensus 1372 ~~~~-~l~~l~l~~~~l~~l~--~~~~-----~~~L~~L~L~~~~~l~~~p~~~----~~~l-~~L~~L~Ls~~~i~~lp 1438 (1866)
..++ +|+.|++++|.+.... .+.. +++|+.|+|++|. +...+... +..+ ++|++|+|++|.+...+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 4456 8999999999988653 2223 3899999999884 55555442 2334 89999999999998665
Q ss_pred h-h----hcC-CCCCcEEecccccCcc----cCCccccCCC-CCcEEEccCCCCCcCCh-----hhcCC-Cccceecccc
Q 000202 1439 E-T----LVN-LKCLQILILRDCDFLF----VLPPEVGSLE-CLEVLDLRGTEIKMLPK-----EIGKL-TSLRYLTVFF 1501 (1866)
Q Consensus 1439 ~-~----i~~-L~~L~~L~L~~~~~~~----~lP~~i~~L~-~L~~L~l~~~~i~~lp~-----~i~~L-~~L~~L~l~~ 1501 (1866)
. . +.. ..+|++|+|++|.+.. .++..+..+. +|++|++++|.++..+. .+..+ ++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 3 3 334 3699999999998764 3445556666 99999999999985543 34555 5999999976
Q ss_pred ccccCCCccccCCCCCCChhhhhc-cccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecCCccc
Q 000202 1502 FGSMYKSEYIKLPPDLISSDILSR-LQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIEC 1572 (1866)
Q Consensus 1502 ~~~~~~~~~~~l~~~~~~~~~l~~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 1572 (1866)
+. +.......+ ...+.. .++|+.|+++.+..... ....+...+..+++|+.|+++.|.+..
T Consensus 206 N~-i~~~~~~~l------~~~l~~~~~~L~~L~Ls~N~l~~~---~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 206 NL-LGLKSYAEL------AYIFSSIPNHVVSLNLCLNCLHGP---SLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp SC-GGGSCHHHH------HHHHHHSCTTCCEEECCSSCCCCC---CHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CC-CChhHHHHH------HHHHhcCCCCceEEECcCCCCCcH---HHHHHHHHHhcCCCccEEEeccCCccc
Confidence 53 111110001 112444 35899999997653321 111233445778999999999987443
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.77 E-value=4.2e-08 Score=121.87 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=141.6
Q ss_pred CCCceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
++.++||+.+++++..++.. .....+.+.|+|.+|+||||||+++++...... -..+++... .......+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----IYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----TCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----cCCCHHHHH
Confidence 36799999999999998875 222234899999999999999999998765542 123333311 222334566
Q ss_pred HHHHHHHhccccccCccc-hhHHHHHHHhh--cCcEEEEEecCCC--HHHHHHHhhccCCCC----CCCEEEEEccccch
Q 000202 260 KELLSKLLNDRNVKNFQN-ISVNFQSKRLA--RKKVLIVFDDVNH--PRQIELLIGRLDRFA----SGSQVIITTRDKQV 330 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~-~~~~~l~~~L~--~k~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IiiTTR~~~v 330 (1866)
..++..+........... .....+...+. +++.+||||+++. ...+..+...+.... .+..||+||++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 666665533211011110 11123333333 5688999999974 555666655543222 36778888887643
Q ss_pred hccCc-------cceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHh---------CCCcceeeeecccc-
Q 000202 331 LTNCE-------VDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYA---------QGVPLALKVLGCYL- 393 (1866)
Q Consensus 331 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLAl~~~g~~L- 393 (1866)
..... ....+++++++.++..+++...+........-..+....+++.+ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 32221 12368999999999999998764210001112245678889999 78875433322211
Q ss_pred --c---C---CCHHHHHHHHHHhccCCCchhhhhhhcccCCCChhhHHHHHHHHHHh
Q 000202 394 --C---G---RSKEEWESAMRKLEIVPHMEIQEVLKISYDSLDDSQKRMHDLLRAMG 442 (1866)
Q Consensus 394 --~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~~~~l~~~~ 442 (1866)
. + -+.+....++..... ..+.-.+..|+.+++.++..++.+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1 133333333333321 1222334567888877766666443
No 166
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.70 E-value=3.2e-08 Score=106.77 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=83.5
Q ss_pred cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
..+.+++++| .+..+|..+ .++|++|+|++|.|+.+ |..+..+.+|++|+|++|.+.+..|..+.++++|++|+|
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678899877 678888766 47899999999999988 567899999999999999866555556789999999999
Q ss_pred cCCCCCcCChh-hcCCCccceecccc
Q 000202 1477 RGTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1477 ~~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
++|.++.+|.. +.++++|++|++.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 99999988775 88899999988864
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=6.5e-08 Score=120.00 Aligned_cols=195 Identities=13% Similarity=0.159 Sum_probs=122.6
Q ss_pred ccchhhHHHHHHHHHhc----cCCccEEEEEcCCCchHHHHHHHHhcCccccccc---ceEEEEEecCCCCHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMF---HVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
.+.||+++++.+.+++. ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...+...++
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 46788889999888885 344568999999999999999999653 22222 2456787766667778888888
Q ss_pred HHhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc------cchhhhcCCCCC-CCCCcEEEEccCChhhhcc
Q 000202 1052 RQLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ------IDLEAVGIPVPG-SENGSKIFMASRELDVCRN 1121 (1866)
Q Consensus 1052 ~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~ 1121 (1866)
.+++..... ..+..+....+.+.+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 777543221 2234555566666664 45899999999752 222222211111 2235667888886644322
Q ss_pred CC-------CCcEEEecCCChHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHcC---CChHHHHH
Q 000202 1122 MD-------VNMVVKLETLSMKDAWELFCKEVGG-IIQSPDIHLYARAIVKGCC---GLPLLTIV 1175 (1866)
Q Consensus 1122 ~~-------~~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~I~~~c~---GlPLAi~~ 1175 (1866)
.. ....+.+++++.++..+++.+.+.. .....-..+....+++.++ |.|..+..
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 21 1258999999999999999876531 0011111334555666666 99984443
No 168
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=2.6e-08 Score=120.30 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=113.1
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++|++..++.+..++..+.. ..+.|+|++|+||||+|+++++.+........++..... .... ....++++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~-~~~i~~~~ 93 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS--DDRG-IDVVRNQI 93 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT--SCCS-HHHHHTHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc--cccC-hHHHHHHH
Confidence 346799999999999999986532 228999999999999999999976432211112221111 1111 11112222
Q ss_pred HHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-ccce
Q 000202 264 SKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EVDH 338 (1866)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~~ 338 (1866)
..+..... .+ .+++.+||+||++. ....+.+...+....+++++|+||+...-. ... ....
T Consensus 94 ~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 22111000 01 34588999999975 445555555554445678888888764321 111 1235
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce-eeee
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA-LKVL 389 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA-l~~~ 389 (1866)
.+++.+++.++..+++...+...... -..+....+++.++|.|.. +..+
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999998765321111 1235678899999999953 4443
No 169
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=3.3e-08 Score=107.02 Aligned_cols=99 Identities=24% Similarity=0.303 Sum_probs=81.7
Q ss_pred ccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCC-ChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1399 LLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSL-PETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1399 L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
.+.+++++| .+..+|..+ .++|++|+|++|.++.+ |..++++++|++|+|++|.+.+..|..++++++|++|+|+
T Consensus 14 ~~~l~~~~n-~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888877 678888866 37899999999999987 5678999999999999998655433446899999999999
Q ss_pred CCCCCcCChh-hcCCCccceecccc
Q 000202 1478 GTEIKMLPKE-IGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~-i~~L~~L~~L~l~~ 1501 (1866)
+|.|+.+|.. ++++++|++|++.+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCccceeCHHHhccccCCCEEEeCC
Confidence 9999998876 88899999988854
No 170
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=5.2e-10 Score=124.47 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCCC-CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccc
Q 000202 1387 LQTLP-GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEV 1465 (1866)
Q Consensus 1387 l~~l~-~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i 1465 (1866)
+..+| .+..+++|+.|++++| .+..+| . +..+++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCC-cc
Confidence 33444 3456677777777766 455566 3 46677888888888877777777777778888888887744 355 57
Q ss_pred cCCCCCcEEEccCCCCCcCCh--hhcCCCccceecccc
Q 000202 1466 GSLECLEVLDLRGTEIKMLPK--EIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~ 1501 (1866)
+++++|++|++++|.++.+|. .+.++++|++|++.+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 777788888888887777654 577778888887755
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=8e-07 Score=110.27 Aligned_cols=287 Identities=13% Similarity=0.097 Sum_probs=165.7
Q ss_pred ccchhhHHHHHHHHHhcc----CCcc--EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVND----VTAS--KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLR 1052 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~----~~~~--vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 1052 (1866)
.+.||+++++++..++.. .... .+.|+|.+|+||||||+.+++....... ...++++++...+...+...++.
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHHH
Confidence 356788888888777743 3334 8999999999999999999653221111 24567777777788899999998
Q ss_pred HhccCCCC-ccCHHHHHHHHHHHhC--CCcEEEEEeCCCCc--cchhhhcCCCCCC-C---CCcEEEEccCChhhhccCC
Q 000202 1053 QLSLHCKD-RETDAQVAEKLWQVLN--GEKFLLLLDDVWEQ--IDLEAVGIPVPGS-E---NGSKIFMASRELDVCRNMD 1123 (1866)
Q Consensus 1053 ~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~l~~~-~---~gs~IivTTR~~~v~~~~~ 1123 (1866)
.++..... ..........+.+.+. +++.+||||+++.. .....+...+... . .+..||+||+.........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 88654322 2234555566666553 66899999999763 3334443333211 1 3667888887664332221
Q ss_pred -------CCcEEEecCCChHHHHHHHHHHhcCC-CCCchHHHHHHHHHHHc---------CCChHHHHHHHHHhh-----
Q 000202 1124 -------VNMVVKLETLSMKDAWELFCKEVGGI-IQSPDIHLYARAIVKGC---------CGLPLLTIVTAKALA----- 1181 (1866)
Q Consensus 1124 -------~~~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~I~~~c---------~GlPLAi~~~g~~L~----- 1181 (1866)
....+.+.+++.++..+++...+... ....--.+....|++.+ +|.|..+..+.....
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 12379999999999999998765320 00111234566788888 788755444333221
Q ss_pred -CC--CCHHHHHHHhhhCCCCccccccchhhHHHHHHHhHhccCCcchhHHHHhhcCCC---CCccccHHHHHHHHHH--
Q 000202 1182 -GE--RNVSVWKHASRKFSLPITIEECCTEDLIELLKFSFDQLKDHDVKSCFLHCSLFP---EDREVSIVEFIDYCIQ-- 1253 (1866)
Q Consensus 1182 -~~--~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~Sy~~L~~~~lk~cfly~s~Fp---~~~~i~~~~Li~~W~a-- 1253 (1866)
+. -+.+....+...... ..+.-.+..||.+ .+.++..++.+. .+..+....+...+..
T Consensus 257 ~~~~~i~~~~v~~~~~~~~~-------------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 257 NGRKHIAPEDVRKSSKEVLF-------------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp TTCSSCCHHHHHHHHHHHSC-------------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHHHhh-------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 122222222221100 0111235567765 455555555443 2224555555544332
Q ss_pred --cCccchhhHhHHHhHHHHHHHHHHhhhhhcc
Q 000202 1254 --EGIIVGTLANAHKRGHQIVDVLVDASLLLIN 1284 (1866)
Q Consensus 1254 --eG~i~~~~~~~~~~~~~~~~~L~~~sll~~~ 1284 (1866)
.|... -.......+++.|.+.+++...
T Consensus 323 ~~~~~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 323 EEYGERP----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHTTCCC----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHcCCCC----CCHHHHHHHHHHHHhCCCeEEe
Confidence 12111 0123456788999999999753
No 172
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.57 E-value=3e-07 Score=105.81 Aligned_cols=195 Identities=10% Similarity=0.058 Sum_probs=111.4
Q ss_pred ccccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh-
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL- 1054 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l- 1054 (1866)
...+.|+++.++.+..++.... .+.+.|+|++|+||||||+.+++.......+.. ........ ...+....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 3356788888888888885443 357899999999999999999653221111100 00000000 00000000
Q ss_pred ----ccCCCCccCHHHHHHHHHHH-----hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhhhc-c-
Q 000202 1055 ----SLHCKDRETDAQVAEKLWQV-----LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDVCR-N- 1121 (1866)
Q Consensus 1055 ----~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~-~- 1121 (1866)
............ ...+.+. ..+++.+||+||++. ...++.+...+.....+..+|+||+...... .
T Consensus 95 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 000000011111 1122222 235679999999975 3445555444433345678888887654211 1
Q ss_pred CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1122 MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1122 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
......+++++++.++..+++.+.+....... -.+....|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11236899999999999999988764322111 13456789999999999888776544
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=2.6e-07 Score=111.71 Aligned_cols=185 Identities=18% Similarity=0.159 Sum_probs=113.7
Q ss_pred cccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
|....+++|++..++.+..++..+. ...+.|+|++|+||||+|+++++.+........++..... .... .....+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~ 95 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS--DERG-INVIRE 95 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT--CHHH-HHTTHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc--ccCc-hHHHHH
Confidence 3345679999999999999998653 2348999999999999999999976433211222221111 0000 011111
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccchh-ccC-ccc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQVL-TNC-EVD 337 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~~-~~~ 337 (1866)
.+........ ...+++.++|+|+++. .+..+.+...+.....++++|+||....-. ... ...
T Consensus 96 ~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 96 KVKEFARTKP--------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHHSCC--------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHHhhCC--------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 1111100000 0125688999999974 455666666655556678899888765321 111 123
Q ss_pred eeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceee
Q 000202 338 HIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALK 387 (1866)
Q Consensus 338 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~ 387 (1866)
..+++.+++.++..+++...+..... .-..+....+++.++|.|..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~ 209 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAI 209 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHH
Confidence 47899999999999999876532221 1224567788899999887543
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.53 E-value=4.9e-07 Score=102.35 Aligned_cols=188 Identities=11% Similarity=-0.010 Sum_probs=111.1
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
...+.|+++.++.+..++.....+.+.|+|.+|+|||++|+.+++.......-...+.+..+...+...+...+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 33567788888888888876655558999999999999999996532111111123334444333333222221111100
Q ss_pred CCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhhh-cc-CCCCcEEEecC
Q 000202 1057 HCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDVC-RN-MDVNMVVKLET 1132 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~~~l~~ 1132 (1866)
.. .-.+++.+||+||++.. ...+.+...+.....+.++|+||+..... .. ......+.+.+
T Consensus 96 ~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~ 160 (226)
T 2chg_A 96 AP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160 (226)
T ss_dssp CC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCC
Confidence 00 01357899999999763 33344433333334567888888765421 11 11124789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
++.++..+++.+.+....... -.+....|++.++|.|..+..+...+
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999987764211111 12446678899999998665544433
No 175
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=1.6e-08 Score=112.40 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=77.0
Q ss_pred cccEEEccCCc-CCcccChhHHhcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEc
Q 000202 1398 NLLTLFLQRNC-RLRVIPPSFFELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDL 1476 (1866)
Q Consensus 1398 ~L~~L~L~~~~-~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l 1476 (1866)
.|+.+.+.++. .+..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+|++|.+ ..+|..++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEEC
Confidence 45555555432 345555544 77888999999988888888 888888899999988874 477887777888899999
Q ss_pred cCCCCCcCChhhcCCCccceeccccc
Q 000202 1477 RGTEIKMLPKEIGKLTSLRYLTVFFF 1502 (1866)
Q Consensus 1477 ~~~~i~~lp~~i~~L~~L~~L~l~~~ 1502 (1866)
++|.++.+| .++++++|++|++.++
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC
Confidence 888888877 6788888888887653
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=5.1e-07 Score=110.07 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=70.3
Q ss_pred EEccCC-CCCCCCCCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccC
Q 000202 1380 IFFMDN-DLQTLPGRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1380 l~l~~~-~l~~l~~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~ 1457 (1866)
++++++ .+..+|.+..+++|+.|+|++++.+..+|+..|+.|++|++|+|++|.|+.+| ..|.+|.+|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 466666 67777776667777888887523677777666677778888888888777665 3567777888888877775
Q ss_pred cccCCcc-ccCCCCCcEEEccCCCCCc
Q 000202 1458 LFVLPPE-VGSLECLEVLDLRGTEIKM 1483 (1866)
Q Consensus 1458 ~~~lP~~-i~~L~~L~~L~l~~~~i~~ 1483 (1866)
. .+|.. +..+. |+.|+|.+|.+..
T Consensus 93 ~-~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 E-SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp S-CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred c-eeCHHHcccCC-ceEEEeeCCCccC
Confidence 4 44443 33343 7777877777663
No 177
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=3e-07 Score=111.14 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=121.0
Q ss_pred cccCcEEEccCCCCC--------------------CCC--CCCC--------CCcccEEEccCCcCCcccChhHHhcCCC
Q 000202 1374 WTHAKMIFFMDNDLQ--------------------TLP--GRPS--------CPNLLTLFLQRNCRLRVIPPSFFELMTS 1423 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~--------------------~l~--~~~~--------~~~L~~L~L~~~~~l~~~p~~~~~~l~~ 1423 (1866)
+++|+.|++++|.+. .+| .+.+ |++|+.|.|.. .+..+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 567888888887776 333 2446 88888888875 577888888888888
Q ss_pred CcEEEccCCCCCCCC-hhhcCCCCCcEEeccccc-----------------Ccc---------cCCccc-----------
Q 000202 1424 LKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCD-----------------FLF---------VLPPEV----------- 1465 (1866)
Q Consensus 1424 L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~-----------------~~~---------~lP~~i----------- 1465 (1866)
|+.|++++|.+..++ ..+..+.++.++.+.... .+. .+|..+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 888888888877665 455566666666544311 000 000000
Q ss_pred -----------------cCCCCCcEEEccCCCCCcCChh-hcCCCccceeccccccccCCCccccCCCCCCChhhhhccc
Q 000202 1466 -----------------GSLECLEVLDLRGTEIKMLPKE-IGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQ 1527 (1866)
Q Consensus 1466 -----------------~~L~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~ 1527 (1866)
..+.+|+.|+|++|.++.+|.. |.++++|+.|.+... ... ++...+.+|.
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-------i~~-----I~~~aF~~~~ 273 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------LKT-----IGQRVFSNCG 273 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-------CCE-----ECTTTTTTCT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-------cce-----ehHHHhhCCh
Confidence 0267899999999999998865 888999999987431 111 2334578888
Q ss_pred cCc-EeecccCCCCCccccccccccccccCCCCCCEEEeecCCccchH
Q 000202 1528 ALE-TLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECVA 1574 (1866)
Q Consensus 1528 ~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 1574 (1866)
+|+ .+.+.. +....-...+.+|++|+.|++..+.+..++
T Consensus 274 ~L~~~l~l~~--------~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 274 RLAGTLELPA--------SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TCCEEEEECT--------TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred hccEEEEEcc--------cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 998 888863 111223466788999999999888877664
No 178
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=7.4e-07 Score=108.59 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=86.0
Q ss_pred cEEEccCCcCCcccChhHHhcCCCCcEEEccC-CCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCCCCcEEEcc
Q 000202 1400 LTLFLQRNCRLRVIPPSFFELMTSLKVLNLSK-TRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVLDLR 1477 (1866)
Q Consensus 1400 ~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 1477 (1866)
..++++++..+..+|. +..+++|++|+|++ |.+..+| ..+++|.+|++|+|++|.+.+..|..|++|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3567776647888998 58899999999996 9999888 579999999999999999888888889999999999999
Q ss_pred CCCCCcCChhhcCCCccceecccc
Q 000202 1478 GTEIKMLPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1478 ~~~i~~lp~~i~~L~~L~~L~l~~ 1501 (1866)
+|.|+.+|..+....+|+.|++.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCccceeCHHHcccCCceEEEeeC
Confidence 999999987755544599998864
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.31 E-value=2.2e-06 Score=105.63 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=111.6
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELL 263 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1866)
...+++|++..++.+...+..+. ..+.+.|+|.+|+||||+|+++++......... ... ...... ...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-----~~~---~~~~~~-~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----ATP---CGVCDN-CREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-----SSC---CSSSHH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-----CCC---CcccHH-HHHHh
Confidence 34579999999999999997643 234788999999999999999998664322100 000 000000 00000
Q ss_pred HH----HhccccccCccchhHHHHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch-h
Q 000202 264 SK----LLNDRNVKNFQNISVNFQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV-L 331 (1866)
Q Consensus 264 ~~----~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~ 331 (1866)
.. +................+.+.+ .+++.+||+||++. ....+.+...+.....+..+|++|.+..- .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000000000111222222 34678999999973 55666666666555567778877765432 1
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeee
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKV 388 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~ 388 (1866)
... .....+++.+++.++..+++...+-.... .-..+....+++.++|.|..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~ 219 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALS 219 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHH
Confidence 111 12367899999999999999765521111 11235577899999999875543
No 180
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.31 E-value=2.2e-06 Score=103.04 Aligned_cols=180 Identities=11% Similarity=0.135 Sum_probs=110.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc-cccceEEEEeeccccccccHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR-HFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
....+++|++..++.+.+++..+. ...+.++|.+|+|||++|+++++.+.. .+...+...+................
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHH
Confidence 344679999999999999987643 223899999999999999999987632 22211111111110000000111111
Q ss_pred HHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccch-hccC-cc
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQV-LTNC-EV 336 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v-~~~~-~~ 336 (1866)
+. ... .+ .+++.++|+|+++. .+..+.+...+.....+.++|+||....- .... ..
T Consensus 92 ~~----~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 92 FA----RTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp HH----HSC---------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred HH----hcC---------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 10 000 01 25678999999974 45566777777666677888888865532 1111 12
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
...+++.+++.++..+++...+-..... -..+....+++.++|.+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3578999999999999988765322211 1245567788888888754
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=2.3e-06 Score=103.11 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=108.4
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
...+.|+++.++.+.+++.....+.+.++|++|+||||+|+.+++.-.-...-...++++.+...+...+ +.++..+..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~ 98 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQ 98 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHh
Confidence 3456788888888888887666555899999999999999999653211111112334443332222221 222222210
Q ss_pred CCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hcc-CCCCcEEEec
Q 000202 1057 HCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRN-MDVNMVVKLE 1131 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~~~~~~l~ 1131 (1866)
.. ..+ .+++.+||+||++.. ..++.+...+.....++++|+||+...- ... ......+++.
T Consensus 99 ~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 99 KK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp BC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 00 011 456899999999762 3344444333333456788888876432 111 1122489999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH-HHHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL-TIVT 1176 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA-i~~~ 1176 (1866)
+++.++..+++...+......- -.+....|++.|+|.|.. +..+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999987653211111 124567799999999954 4444
No 182
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=2.4e-06 Score=103.10 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=25.1
Q ss_pred ccccCcEeecccCCCCCccccccccccccccCCCCCCEEEeecC
Q 000202 1525 RLQALETLSIDVHPGDKRWDKDVKIVITEVSGLTKLSSLSFHFP 1568 (1866)
Q Consensus 1525 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 1568 (1866)
.+++|+.|++..+.. ...-...+.+|++|+.|++..|
T Consensus 224 ~~~~L~~l~L~~n~i-------~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 224 YMPNLVSLDISKTNA-------TTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp HCTTCCEEECTTBCC-------CEECTTTTTTCTTCCEEECCTT
T ss_pred hcCCCeEEECCCCCc-------ceecHhhhhCCCCCCEEECCcc
Confidence 378899999874321 1123345788999999988654
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.16 E-value=7e-06 Score=98.83 Aligned_cols=174 Identities=13% Similarity=0.058 Sum_probs=97.1
Q ss_pred ccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.+.|+...+..+...+. ......|.|+|++|+|||++|+.+++.. .. ..+++..+......++...
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l~~~---- 83 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDLAAI---- 83 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHHHHH----
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHHHHH----
Confidence 45666666666655552 1233568899999999999999996522 11 2234443322222221111
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--chhhhcCCCC--------C----------CCCCcEEEEcc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI--DLEAVGIPVP--------G----------SENGSKIFMAS 1113 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs~IivTT 1113 (1866)
+ ... ..+..+|+||++.... ..+.+...+. . ...+.++|.||
T Consensus 84 l-----------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 84 L-----------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp H-----------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred H-----------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1 110 1345688888887532 2222211100 0 00234666666
Q ss_pred CChhhh-ccC--CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh
Q 000202 1114 RELDVC-RNM--DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL 1180 (1866)
Q Consensus 1114 R~~~v~-~~~--~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L 1180 (1866)
...... ... ....++.+.+++.++..+++.+.+......- -.+....+++.|+|.|-.+..+...+
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 644321 111 1135899999999999999888765322111 13456778999999998877666554
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.13 E-value=6.2e-06 Score=99.28 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=104.8
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
....+|||++..++.+...+... ......|.|+|.+|+|||++|+++++.....| .++ +... ......
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~---~~~~~~-- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPA---IEKPGD-- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTT---CCSHHH--
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-eccc---cCChHH--
Confidence 34568999999999988887631 12335688999999999999999998764332 111 1111 011111
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHhh---cCcEEEEEecCCC--HHHHHHHhhccCCC------------------C
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRLA---RKKVLIVFDDVNH--PRQIELLIGRLDRF------------------A 316 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~--~~~~~~l~~~~~~~------------------~ 316 (1866)
+...+. .++.+|+||+++. ......+...+... .
T Consensus 80 -----------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 80 -----------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp -----------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred -----------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 111111 3567899999975 33334333222111 1
Q ss_pred CCCEEEEEccccchh-ccC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcceeeee
Q 000202 317 SGSQVIITTRDKQVL-TNC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLALKVL 389 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl~~~ 389 (1866)
++.++|.||...... ... ....++++.+++.+|..+++...+...... -..+....++++++|.|-.+..+
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~ 210 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRL 210 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHH
Confidence 245677766644322 111 113578999999999999988776332211 22456788999999999766544
No 185
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=6.9e-05 Score=92.34 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccCcccCCccccCCCCCcEE
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDFLFVLPPEVGSLECLEVL 1474 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 1474 (1866)
+..+..+.+.. .+..++...|.++ +|+.+.|..+ ++.++. .+.+ .+|+.+.|.. .+...-+..|.++.+|+.+
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666653 3667777777764 6888888665 666653 4444 4688888875 3333334577888888888
Q ss_pred EccCCCCCcCChhhcCCCccceecc
Q 000202 1475 DLRGTEIKMLPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1475 ~l~~~~i~~lp~~i~~L~~L~~L~l 1499 (1866)
++++|.++.+|.......+|+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred ecCCCcceEechhhEeecccCEEEe
Confidence 8888888888776444567777665
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=2.5e-07 Score=113.04 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=73.3
Q ss_pred cccCcEEEccCCCCCCCC-----C-C-CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhh----
Q 000202 1374 WTHAKMIFFMDNDLQTLP-----G-R-PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETL---- 1441 (1866)
Q Consensus 1374 ~~~l~~l~l~~~~l~~l~-----~-~-~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i---- 1441 (1866)
.++++.+++++|.+.... . + ..+++|+.|+|++|..-..-...++..+++|++|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456778888888776321 0 1 133577778887773222212233344567777888777776322 222
Q ss_pred -cCCCCCcEEecccccCcc----cCCccccCCCCCcEEEccCCCCCc-----CChhhcCCCccceecccc
Q 000202 1442 -VNLKCLQILILRDCDFLF----VLPPEVGSLECLEVLDLRGTEIKM-----LPKEIGKLTSLRYLTVFF 1501 (1866)
Q Consensus 1442 -~~L~~L~~L~L~~~~~~~----~lP~~i~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~ 1501 (1866)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.|.. ++..+...++|++|++++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 235667777777776432 244445666777777777776652 233445555555555543
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.12 E-value=2.3e-06 Score=94.24 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=41.9
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
....++||+..++++.+.+... ..+.+.|+|.+|+|||+||+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999998753 3456889999999999999999987643
No 188
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.08 E-value=1e-05 Score=95.31 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=99.7
Q ss_pred ccCCCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
....+++|++..+++|.+.+... ....+.+.|+|.+|+|||+||+++++.....| +........
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~- 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELV- 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHH-
Confidence 34567999999999998877531 12345689999999999999999998764432 111111100
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccC--
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLD-- 313 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~-- 313 (1866)
....... .......+......++.+|+||+++.. ..+..++..+.
T Consensus 89 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 89 KKFIGEG-----------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CCSTTHH-----------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HhccchH-----------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0000000 000011222233456789999999643 12333333322
Q ss_pred CCCCCCEEEEEccccchhc-----cCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 314 RFASGSQVIITTRDKQVLT-----NCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 314 ~~~~gs~IiiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
....+..||.||.....+. .......+.++.++.++..++|...+........ .....+++.+.|.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 1233567788887554332 1122457899999999999999877643221111 1134556666653
No 189
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.03 E-value=4.3e-06 Score=95.87 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred cCCCceeeh---hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVE---WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~---~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
..++|+|.+ ..++.+..+...+ ..+.+.|+|.+|+||||||+++++..........|+.. .... ...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~--~~~----- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHA--SIS----- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGG--GSC-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHH--HHH-----
Confidence 446788743 4556666666543 35678999999999999999999976654333444432 1100 000
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH--H--HHHHhhccCCC-CCCC-EEEEEccccch-hcc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR--Q--IELLIGRLDRF-ASGS-QVIITTRDKQV-LTN 333 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~gs-~IiiTTR~~~v-~~~ 333 (1866)
.. .+ +.+ .++.+|||||++... . .+.+...+... ..+. ++|+||+...- ...
T Consensus 96 ---------------~~----~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ---------------TA----LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ---------------GG----GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ---------------HH----HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 011 345789999996421 1 22232221110 1122 58888764321 111
Q ss_pred --------CccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 334 --------CEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 334 --------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
+....++++++++.++..+++...+..... .-..+....+++.++|.+-.+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l 213 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTL 213 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHH
Confidence 111268899999999999999876532111 112455677888888876433
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.03 E-value=9.6e-06 Score=101.18 Aligned_cols=178 Identities=12% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCce-eehhhH--HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 185 SKDLI-GVEWRI--KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 185 ~~~~v-Gr~~~l--~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++|| |....+ ..+......... ...+.|+|.+|+||||||+++++.....++..-++.... ..+..+
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~--------~~~~~~ 174 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS--------EKFLND 174 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH--------HHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH--------HHHHHH
Confidence 34576 654443 233333333222 567999999999999999999998766654433322111 112233
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccch------
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v------ 330 (1866)
+...+... ....+.+.++.+.-+|+|||++.. ...+.+...+.. ...|..||+||.+..-
T Consensus 175 ~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 175 LVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 33322211 112233344446779999999632 223333333211 1357789999876321
Q ss_pred ---hccCccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCc
Q 000202 331 ---LTNCEVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 331 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 383 (1866)
...+....++.+++++.++-.+++.+.+-... ..+ .+....|++.++|.+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNL 299 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 11122235788999999999888877652111 111 123556666666655
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=1.5e-05 Score=97.09 Aligned_cols=191 Identities=9% Similarity=0.114 Sum_probs=109.0
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc--cccceEEEEeeccccccccHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR--HFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....+++|++..++.+..++..+... .+.|+|.+|+||||+|+.+++.+.. .+...+.-.+... .... ....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---~~~~-~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD---ERGI-SIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS---CCCH-HHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc---ccch-HHHH
Confidence 34567999999999999999865322 2899999999999999999987542 1222221111111 0111 1122
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-cc
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EV 336 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~ 336 (1866)
+.......... ..... ......-..++-+|++|+++. ......+...+.......++|++|.... +.... ..
T Consensus 108 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 108 EKVKNFARLTV-SKPSK---HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp THHHHHHHSCC-CCCCT---THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHhhhcc-cccch---hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222111100 00000 000111123557999999874 4444555555444445677887775442 21111 11
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
...+++.+++.++..+.+...+...... -..+....|++.++|.|-.
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRR 230 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHH
Confidence 3478899999999999888765322211 1245678899999988764
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=2.1e-05 Score=95.96 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=103.7
Q ss_pred cccCCCceeehhhHHHHHHhh-hcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec-------------
Q 000202 182 QSESKDLIGVEWRIKEIESLL-RTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR------------- 247 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L-~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~------------- 247 (1866)
|....+++|.+..++.+..++ ..+. ... +.|+|..|+||||+|+.++..+...-.+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334567999999999999988 5432 233 899999999999999999985432222211111000
Q ss_pred -------cccccc---cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCC
Q 000202 248 -------AAEETG---RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRF 315 (1866)
Q Consensus 248 -------~~~~~~---~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~ 315 (1866)
...... ......++++..+.......... .+ ..+..++-++|||+++. ....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD-----SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccc-----cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000 00001122222221111000000 00 00234677999999974 44445555544444
Q ss_pred CCCCEEEEEccccc-hhccC-ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhH-HHHHHHHHHHhCCCcc
Q 000202 316 ASGSQVIITTRDKQ-VLTNC-EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGY-TELAHKALKYAQGVPL 384 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPL 384 (1866)
..+..+|+||.+.. +.... .....+++++++.++..+.+...+-.... .-. .+.+..|++.++|.+-
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r 231 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLR 231 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHH
Confidence 55778888887643 22111 12367899999999999998876522111 111 2456778888888663
No 193
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.98 E-value=3.6e-05 Score=93.45 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=106.9
Q ss_pred cchhhhhhHHHHhhcccccccccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHH
Q 000202 162 ESRLVADIANEVLERLDDTFQSESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 162 e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
++.+++.+..++..+. ++....+++|.+..++.|.+.+.. .....+.|.|+|.+|+|||+||+++++
T Consensus 63 ~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4555666666554433 333456799999999999887752 112356789999999999999999998
Q ss_pred hhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---------
Q 000202 232 KISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP--------- 302 (1866)
Q Consensus 232 ~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------- 302 (1866)
.....| +..+.... ......-.... ....+......++.+|+||+++..
T Consensus 140 ~~~~~~----~~i~~~~l--~~~~~g~~~~~----------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 140 QSGATF----FSISASSL--TSKWVGEGEKM----------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HTTCEE----EEEEGGGG--CCSSTTHHHHH----------------HHHHHHHHHHTCSEEEEEETHHHHTBC------
T ss_pred HcCCeE----EEEehHHh--hccccchHHHH----------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 763322 22211111 00000000000 001112222456789999999532
Q ss_pred ----HHHHHHhhccCC----CCCCCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHH
Q 000202 303 ----RQIELLIGRLDR----FASGSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTEL 371 (1866)
Q Consensus 303 ----~~~~~l~~~~~~----~~~gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 371 (1866)
.....++..+.. ...+..||.||.....+.. . .....+.++..+.++..+++...+-...... ..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHH
Confidence 122333332221 1234455656654322211 0 2235678899999998888876653221111 1345
Q ss_pred HHHHHHHhCCC
Q 000202 372 AHKALKYAQGV 382 (1866)
Q Consensus 372 ~~~i~~~~~Gl 382 (1866)
...+++.+.|.
T Consensus 276 l~~la~~t~G~ 286 (357)
T 3d8b_A 276 IEQIVQQSDAF 286 (357)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHcCCC
Confidence 67788888874
No 194
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=5.6e-07 Score=109.99 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=109.5
Q ss_pred CCcccEEEccCCcCCcccChhHHh-----cCCCCcEEEccCCCCCC--CChhhcCCCCCcEEecccccCcccCCccc---
Q 000202 1396 CPNLLTLFLQRNCRLRVIPPSFFE-----LMTSLKVLNLSKTRIKS--LPETLVNLKCLQILILRDCDFLFVLPPEV--- 1465 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p~~~~~-----~l~~L~~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lP~~i--- 1465 (1866)
.++|+.|+|++|. +.......+. ..++|++|+|++|.+.. +..-...+.+|+.|+|++|.+...-...+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4578899999874 4433322222 23689999999998863 22223356789999999998654333333
Q ss_pred --cCCCCCcEEEccCCCCCc-----CChhhcCCCccceeccccccccCCCccccCCCCCCChhhhhccccCcEeecccCC
Q 000202 1466 --GSLECLEVLDLRGTEIKM-----LPKEIGKLTSLRYLTVFFFGSMYKSEYIKLPPDLISSDILSRLQALETLSIDVHP 1538 (1866)
Q Consensus 1466 --~~L~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~~L~l~~~~ 1538 (1866)
...++|++|+|++|.++. ++..+..+++|++|+++++. +.......+ ...+...++|+.|+++.|.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L------~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELL------AAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHH------HHHGGGCSCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHH------HHHHhcCCCcCeEECCCCC
Confidence 246789999999998863 55667888899999887642 111000000 1235667789999998876
Q ss_pred CCCccccccccccccccCCCCCCEEEeecCCccch
Q 000202 1539 GDKRWDKDVKIVITEVSGLTKLSSLSFHFPEIECV 1573 (1866)
Q Consensus 1539 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 1573 (1866)
... .....+...+..+++|+.|++++|.+...
T Consensus 223 i~~---~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 223 AGD---TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCH---HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCH---HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 432 12234556677788899999999988754
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.95 E-value=4.2e-05 Score=91.57 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=99.3
Q ss_pred ccCCCceeehhhHHHHHHhhh----------cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLR----------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
..-.+++|.+..++.|.+.+. ......+-|.|+|.+|+|||+||+++++.....| +......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~---- 86 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD---- 86 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHH----
Confidence 344679999999999988772 1222345689999999999999999998764332 1111111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccC---CCC
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLD---RFA 316 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~ 316 (1866)
+.....+. ...............++.+|+||+++.. .....++..+. ...
T Consensus 87 ---------l~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 ---------LVSKWMGE-----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---------HHTTTGGG-----HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---------Hhhcccch-----HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 11110000 0000111222223456789999999742 11233333222 223
Q ss_pred CCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 317 SGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||.....+... .....+.++..+.++-.++|..++....... .......+++.+.|.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGY 219 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTC
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCC
Confidence 455666677654332110 1245678889999999999988774322111 123456677777763
No 196
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=1.5e-05 Score=95.95 Aligned_cols=185 Identities=13% Similarity=0.058 Sum_probs=107.8
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCccccccc-ceEEEEEecCCCCHHHHHHHHHHHhccC
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMF-HVIIWVTVSRYWNTRKIQKQVLRQLSLH 1057 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 1057 (1866)
.+.|+++.++.+.+++.....+.+.++|++|+||||+|+.+++.-.-. .+ ...+.+..+....... .+..+..+...
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 103 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINV-IREKVKEFART 103 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHT-THHHHHHHHHS
T ss_pred HhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHH-HHHHHHHHHhh
Confidence 466777888888888876666668999999999999999996532111 11 1122333222111110 01111110000
Q ss_pred CCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChhh-hccC-CCCcEEEecC
Q 000202 1058 CKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELDV-CRNM-DVNMVVKLET 1132 (1866)
Q Consensus 1058 ~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~ 1132 (1866)
..+ .+++.+||+||++.. ..++.+...+.....+.++|+||+...- .... .....+.+.+
T Consensus 104 ---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 104 ---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp ---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCC
T ss_pred ---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecC
Confidence 001 267889999999753 3444444333333456788888876432 1110 0124789999
Q ss_pred CChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 000202 1133 LSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAKALA 1181 (1866)
Q Consensus 1133 L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L~ 1181 (1866)
++.++..+++.+.+......- -.+....|++.++|.|..+..+...+.
T Consensus 169 l~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp CCHHHHHHHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999987764322111 134566788999999987665544443
No 197
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.9e-05 Score=89.09 Aligned_cols=164 Identities=10% Similarity=0.049 Sum_probs=95.0
Q ss_pred CceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEEeeccccccccHHHHH
Q 000202 187 DLIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFACNVRAAEETGRLDDLR 259 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~l~ 259 (1866)
.+.||+.+++++...|... ......+.|+|.+|+|||++|+++++++.... +...++..-.. .......+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~--~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL--ELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT--CCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc--ccCCHHHHH
Confidence 4899999999999888642 23456789999999999999999999775422 12223322211 122235566
Q ss_pred HHHHHHHhccccccCccchhHHHHHHHh------hcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCE--EEEEcccc
Q 000202 260 KELLSKLLNDRNVKNFQNISVNFQSKRL------ARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQ--VIITTRDK 328 (1866)
Q Consensus 260 ~~ll~~~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~--IiiTTR~~ 328 (1866)
..+..++.+... . .......+.+.+ .++++++|||+++.. +.+-.+... +. ...++ ||.++...
T Consensus 99 ~~I~~~L~g~~~-~--~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 99 EKIWFAISKENL-C--GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSS
T ss_pred HHHHHHhcCCCC-C--chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCc
Confidence 677777754422 1 111122333322 456799999999853 333333321 11 12333 34444432
Q ss_pred chh---------ccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 329 QVL---------TNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 329 ~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+.. ..++ ...+.+++++.+|-.+++..++
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 221 1221 2468899999999999887655
No 198
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.93 E-value=6.5e-05 Score=87.14 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=94.0
Q ss_pred CCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+..++.+.+++.. . ....+.|.|+|.+|+|||++|+++++.....| +....... ...
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~--~~~ 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEF--VEV 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTT--SSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHH--Hhh
Confidence 35788998888877765531 1 12345688999999999999999998764332 11111111 000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-----------------HHHHHHhhccCCC--
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-----------------RQIELLIGRLDRF-- 315 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~-- 315 (1866)
..... .......+.......+.+|+||+++.. ..+..++..+...
T Consensus 79 ~~~~~----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 IGGLG----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp STTHH----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ccChh----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00000 000011222223456789999999853 1233343333221
Q ss_pred CCCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 316 ASGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
..+..||.||.....+.. . .....+.++..+.++-.+++...+.... ...........+++.+.|.+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCC
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCC
Confidence 234566667755432211 1 1245778999999999999887653211 11111223456666666654
No 199
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.91 E-value=6.8e-05 Score=87.89 Aligned_cols=165 Identities=8% Similarity=0.046 Sum_probs=99.0
Q ss_pred cchhhHHHHHHHHHh----ccCCccEEEEEcCCCchHHHHHHHHhcCccccc------ccceEEEEEecCCCCHHHHHHH
Q 000202 980 VNYTQRNVRKIFRYV----NDVTASKIGVYGVGGIGKTAALKALISYPEVKV------MFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
..+|+++++++...+ .....+.+-|+|.+|+|||++++.|.+.-.... .| ..+.++.....+...+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 347888888887776 345667889999999999999999965432111 12 3456777777788899999
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHHh---CCCcEEEEEeCCCCccchhhhcCCC--CCCCC-CcEEEEccCChhh-----
Q 000202 1050 VLRQLSLHCKDRETDAQVAEKLWQVL---NGEKFLLLLDDVWEQIDLEAVGIPV--PGSEN-GSKIFMASRELDV----- 1118 (1866)
Q Consensus 1050 i~~~l~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l--~~~~~-gs~IivTTR~~~v----- 1118 (1866)
|++++...........+....+.+.+ .+++++||||+++...+-+.+...+ +.... ...||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 99999654322222222233333333 4578999999998643212111111 11111 1233334433222
Q ss_pred ----hccCCCCcEEEecCCChHHHHHHHHHHh
Q 000202 1119 ----CRNMDVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1119 ----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
...++ ...+.+++++.++-.+++.+++
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12222 2478999999999999998776
No 200
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.90 E-value=3e-05 Score=93.82 Aligned_cols=168 Identities=15% Similarity=0.217 Sum_probs=101.6
Q ss_pred cCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
...+++|++..++.+..++... ......|.|+|.+|+|||+||++++++....| +..... .......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~-----~~~~~~--~~~~~~~--- 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI-----KTTAAP--MIEKSGD--- 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE-----EEEEGG--GCCSHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe-----EEecch--hccchhH---
Confidence 4567999999999999888742 23345689999999999999999988764433 211111 0010011
Q ss_pred HHHHHHhccccccCccchhHHHHHHHh--hcCcEEEEEecCCC--HHHHHHHhhccCCCC------------------CC
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRL--ARKKVLIVFDDVNH--PRQIELLIGRLDRFA------------------SG 318 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~------------------~g 318 (1866)
+...+ ..+..+|+||+++. ......+...+.... ++
T Consensus 97 ----------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 97 ----------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ----------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ----------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 11111 23567899999974 344444443332211 12
Q ss_pred CEEEEEccccchhc-cC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 319 SQVIITTRDKQVLT-NC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 319 s~IiiTTR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
.++|.||....... .. .....+++++++.++..+++...+-... ..-..+....+++.++|.|-.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~ 222 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRI 222 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHH
Confidence 45666665432211 10 1236799999999999999887653211 112345677788888998843
No 201
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=2.8e-05 Score=99.42 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=100.2
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---------------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---------------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR 247 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---------------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 247 (1866)
....+++|++..++++..++... ....+.+.|+|.+|+||||+|+++++... ++ .+.+ +..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-NAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-CTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-eCC
Confidence 34567999999999999998741 01346899999999999999999999772 21 1111 111
Q ss_pred cccccccHHHHHHHHHHHHhccccccCccchhHHHH-HHHhhcCcEEEEEecCCCH-----HHHHHHhhccCCCCCCCEE
Q 000202 248 AAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQ-SKRLARKKVLIVFDDVNHP-----RQIELLIGRLDRFASGSQV 321 (1866)
Q Consensus 248 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~I 321 (1866)
. ... .......+........ ......... ......++.+||||+++.. ..+..+...+.. .+..|
T Consensus 112 ~---~~~-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~i 182 (516)
T 1sxj_A 112 D---VRS-KTLLNAGVKNALDNMS---VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPL 182 (516)
T ss_dssp S---CCC-HHHHHHTGGGGTTBCC---STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCE
T ss_pred C---cch-HHHHHHHHHHHhcccc---HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCE
Confidence 1 111 1222222211111111 000000000 0012357889999999642 112333322221 23446
Q ss_pred EEEccccc---hhccCccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCCc
Q 000202 322 IITTRDKQ---VLTNCEVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 322 iiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 383 (1866)
|+++.+.. +.........+++++++.++..+.+...+.... ... .+....|++.++|.+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDI 245 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcH
Confidence 66554432 211112345789999999999988876653211 112 234677888888844
No 202
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.86 E-value=5.9e-05 Score=90.62 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=100.6
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....+++|.+..++.+..++..+. ...++.+.|.+|+|||++|+++++.....| +.+. ... .. ....++.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-~~~----~~-~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-GSD----CK-IDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-TTT----CC-HHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-ccc----cC-HHHHHHH
Confidence 345789999999999999998543 345778889999999999999998774322 2222 111 11 1111222
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH---HHHHHHhhccCCCCCCCEEEEEccccchhc-cC-ccc
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP---RQIELLIGRLDRFASGSQVIITTRDKQVLT-NC-EVD 337 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~~-~~~ 337 (1866)
+........ ..+++.+||+|+++.. +..+.+...+.....+.++|+||....-.. .. ...
T Consensus 93 ~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 211111100 1236789999999864 345555554443345678888887653211 11 113
Q ss_pred eeeecCCCCHHHHHHHHH-------hhcCCCC-CCChhHHHHHHHHHHHhCCCcc
Q 000202 338 HIYQMKELVHADAHKLFT-------QCAFRGD-HLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 338 ~~~~l~~L~~~ea~~Lf~-------~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.++++++++.++-.+++. ..+.... ..++ .+....+++.++|.+-
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFR 210 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHH
Confidence 578999999888433322 2111111 1111 2456667777777654
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.84 E-value=0.00011 Score=86.95 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=97.4
Q ss_pred cccCCCceeehhhHHHHHHhhhcC----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 182 QSESKDLIGVEWRIKEIESLLRTG----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
+....+++|.+..++.+.+.+... ....+.+.|+|.+|+||||+|+++++.....| +..+......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhh
Confidence 344568999999999998877421 11345789999999999999999998764332 1111111000
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhc---cCCC
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGR---LDRF 315 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~---~~~~ 315 (1866)
. .. ..........+......++.+|+||+++.. .....++.. .+..
T Consensus 93 ~-----------------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 93 K-----------------YV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp S-----------------SC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred c-----------------cc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 0 00 000000011122223456789999999642 111222222 1111
Q ss_pred --CCCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 316 --ASGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 316 --~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
+.+..||.||.....+... .....+.++..+.++..+++...+-...... ..+....+++.+.|.+-
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSG 226 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCH
Confidence 2345566677654322110 1235677888888888888876553221111 13456778888888764
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.81 E-value=7.9e-05 Score=92.60 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=98.9
Q ss_pred cccCCCceeehhhH---HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 182 QSESKDLIGVEWRI---KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 182 ~~~~~~~vGr~~~l---~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
|.....+||.+..+ ..+...+..+. ...+.|+|.+|+||||||+.+++.....|. ..... ......
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~-----~l~a~---~~~~~~- 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE-----RISAV---TSGVKE- 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE-----EEETT---TCCHHH-
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE-----EEEec---cCCHHH-
Confidence 34456899999888 77888887543 467899999999999999999997654432 11111 111111
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEE-Eccccch--hcc
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVII-TTRDKQV--LTN 333 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii-TTR~~~v--~~~ 333 (1866)
.++++... .......++.+|+||+++. ..+.+.|+..+.. + ...+|. ||.+... ...
T Consensus 91 ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 11111110 1111245788999999975 3344455554443 2 233443 5555421 111
Q ss_pred -CccceeeecCCCCHHHHHHHHHhhcCCCC-----CCChhHHHHHHHHHHHhCCCc
Q 000202 334 -CEVDHIYQMKELVHADAHKLFTQCAFRGD-----HLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 334 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.....++.+++++.++..+++.+.+-... ....-..+....+++.++|.+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~ 208 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH
Confidence 12245788999999999998877653210 111123455667777777754
No 205
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00027 Score=84.24 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
-.+++|.+...+.|.+.+.. .....+.|.|+|.+|+|||+||+++++.... .-|+...... ...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~-l~~- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSD-LVS- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCS-SCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHH-HHh-
Confidence 45788888888888776531 1123467899999999999999999987621 1222211110 000
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCC---CCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDR---FASG 318 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~g 318 (1866)
... .................++.+|+||+++.. .....++..+.. ...+
T Consensus 85 --------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 --------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp --------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred --------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 000 000000111122223457789999999753 122333333222 2334
Q ss_pred CEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 319 SQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 319 s~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
..||.||.....+... .....+.++..+.++-.+++..+.-...... .......+++.+.|.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGY 214 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTC
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCC
Confidence 4555566544322110 2245678888898888888887663221111 123456677777665
No 206
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.80 E-value=0.00017 Score=88.29 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=102.0
Q ss_pred CCCceeehhhHHHH---HHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeec-c-ccccccHHHHH
Q 000202 185 SKDLIGVEWRIKEI---ESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVR-A-AEETGRLDDLR 259 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l---~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~-~-~~~~~~~~~l~ 259 (1866)
..+|||++..++.+ ...+..+....+.+.|+|.+|+|||++|+++++......+ |+.... . ...........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 56899999997764 4444444333468999999999999999999998754322 222111 1 00111112233
Q ss_pred HHHHHHHhccc--------------------c----------ccCccchhHHHHHHH-----hhcC----cEEEEEecCC
Q 000202 260 KELLSKLLNDR--------------------N----------VKNFQNISVNFQSKR-----LARK----KVLIVFDDVN 300 (1866)
Q Consensus 260 ~~ll~~~~~~~--------------------~----------~~~~~~~~~~~l~~~-----L~~k----~~LlVlDdv~ 300 (1866)
.+.+....+.. . ...........+.+. ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33322211100 0 000000001111111 1223 3599999997
Q ss_pred C--HHHHHHHhhccCCCCCCCEEEEEccc-----------------cchhccCccceeeecCCCCHHHHHHHHHhhcCCC
Q 000202 301 H--PRQIELLIGRLDRFASGSQVIITTRD-----------------KQVLTNCEVDHIYQMKELVHADAHKLFTQCAFRG 361 (1866)
Q Consensus 301 ~--~~~~~~l~~~~~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 361 (1866)
. .+....+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+-..
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHc
Confidence 4 45556666555443333 34444431 11111 12457999999999999998765322
Q ss_pred CCCChhHHHHHHHHHHHhC-CCcce
Q 000202 362 DHLDAGYTELAHKALKYAQ-GVPLA 385 (1866)
Q Consensus 362 ~~~~~~~~~~~~~i~~~~~-GlPLA 385 (1866)
.. .-..+....+++.+. |.|-.
T Consensus 276 ~~--~~~~~~l~~l~~~~~~G~~r~ 298 (368)
T 3uk6_A 276 DV--EMSEDAYTVLTRIGLETSLRY 298 (368)
T ss_dssp TC--CBCHHHHHHHHHHHHHSCHHH
T ss_pred CC--CCCHHHHHHHHHHhcCCCHHH
Confidence 11 122456777888887 66643
No 207
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.79 E-value=0.00012 Score=90.18 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=57.0
Q ss_pred cccccCcEEEccCCCCCCCCC-CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcE
Q 000202 1372 EEWTHAKMIFFMDNDLQTLPG-RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQI 1449 (1866)
Q Consensus 1372 ~~~~~l~~l~l~~~~l~~l~~-~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~ 1449 (1866)
..+.+|+.+.+..|.+..++. ...+.+|+.+.|..+ +..++...|.++++|+.++|..+ ++.++. .+.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 344455555555555554442 112455555555422 44555555555555555555542 344432 2223 45555
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCC-----cCCh-hhcCCCccceecc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIK-----MLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~-----~lp~-~i~~L~~L~~L~l 1499 (1866)
+.|.+ .+...-+..|.++.+|+.+++.++.+. .++. .+..+++|+.+.+
T Consensus 253 i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 253 VKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 55532 222222334555555555555554433 2322 2455555555544
No 208
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.78 E-value=6.9e-05 Score=87.45 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=89.8
Q ss_pred CceeehhhHHHHHH-------hhhc-CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 187 DLIGVEWRIKEIES-------LLRT-GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~-------~L~~-~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
.++|....++++.. .+.. .....+.+.|+|.+|+|||+||+++++.....| +.+...... ........
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~~ 109 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETAK 109 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHHH
Confidence 56777666555544 3321 233567899999999999999999998743322 111111100 00000000
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH------------HHHHHHhhccCC---CCCCCEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP------------RQIELLIGRLDR---FASGSQVII 323 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~Iii 323 (1866)
.. .....+......+..+|+||+++.. ..++.+...+.. .+....||.
T Consensus 110 ~~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 110 CQ-----------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HH-----------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HH-----------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 00 0011222223456789999998642 223444333322 223344666
Q ss_pred Eccccchhcc---Cc-cceeeecCCCCH-HHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 324 TTRDKQVLTN---CE-VDHIYQMKELVH-ADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 324 TTR~~~v~~~---~~-~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
||.....+.. .+ ....+++++++. ++-.+++.... ... .+....+++.+.|.+
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKK 230 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSE
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCC
Confidence 7776644332 11 145688999988 55555554421 111 345778888888865
No 209
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.78 E-value=0.00097 Score=82.34 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecc
Q 000202 1393 RPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILR 1453 (1866)
Q Consensus 1393 ~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~ 1453 (1866)
+.+|.+|+.+.+.. .+..++...|.++.+|+.++|..+ ++.++ ..+.++.+|+.+.+.
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 45667777777753 366666666677777777777543 44444 345555666655443
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.77 E-value=6e-05 Score=90.52 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCce-eehhh--HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHH
Q 000202 185 SKDLI-GVEWR--IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKE 261 (1866)
Q Consensus 185 ~~~~v-Gr~~~--l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1866)
.++|| |.... ...+..+...+......+.|+|.+|+||||||+++++.....-...+++. . ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHHHH
Confidence 45676 54333 23445555443323457899999999999999999997654311223332 1 112222
Q ss_pred HHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----HHHHHHhhccCC-CCCCCEEEEEccccch------
Q 000202 262 LLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----RQIELLIGRLDR-FASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 262 ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTTR~~~v------ 330 (1866)
+...+... ........+. +..+|+|||++.. ...+.+...+.. ...|.+||+||.+..-
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 22222111 0111222232 3678999999642 222223222211 1346688888864321
Q ss_pred ---hccCccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 331 ---LTNCEVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 331 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
...+....++++++ +.++-.+++...+...... -..+....+++++ |.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~ 200 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KN 200 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SS
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CC
Confidence 11112225688999 9999999888766321111 1134455666666 54
No 211
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.77 E-value=0.00027 Score=88.27 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=100.5
Q ss_pred ccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
....+++|.+...+.|.+.+.. .....+.|.|+|.+|+|||+||+++++... ..-|+.....
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~---- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS---- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH----
Confidence 3456799999999988877631 112346789999999999999999998762 1122221111
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCC---C
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRF---A 316 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~ 316 (1866)
.+. ....+. ...............++.+|+||+++.. .....++..+... .
T Consensus 203 ----~l~----~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 ----DLV----SKWLGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHH----hhhcch-----HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 011 111111 1111112222233457889999999853 2334455444332 3
Q ss_pred CCCEEEEEccccchhccC---ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 317 SGSQVIITTRDKQVLTNC---EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||.....+... .....+.++..+.++..++|..++..... .-.......|++.+.|.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~ 336 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGY 336 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTC
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCC
Confidence 456677677654322110 22356788888888888888877632211 11123456777777774
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.76 E-value=0.00021 Score=86.56 Aligned_cols=175 Identities=16% Similarity=0.144 Sum_probs=96.1
Q ss_pred cCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..++.|.+.+.. .....+-|.|+|.+|+|||+||+++++.....| +......
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~----- 119 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSD----- 119 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHH-----
Confidence 446799999999988887631 112234588999999999999999999764332 1111111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH-------------HHHHHhhccC---CCCC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR-------------QIELLIGRLD---RFAS 317 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~---~~~~ 317 (1866)
+ .....+ ................++.+|+||+++... ....++..+. ....
T Consensus 120 ----l----~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 120 ----L----VSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ----H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ----H----hhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 100000 000001112222234578899999997421 1233333222 1133
Q ss_pred CCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCC
Q 000202 318 GSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 318 gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 382 (1866)
+..||.||.....+.. . .....+.++..+.++-.+++..+........ .......|++.+.|.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGY 252 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTC
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCC
Confidence 5556666654432211 0 2345678899999999999887763322111 133456677777774
No 213
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.74 E-value=0.00028 Score=84.71 Aligned_cols=177 Identities=13% Similarity=0.133 Sum_probs=98.8
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhcc---
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLND--- 269 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--- 269 (1866)
...+.+...+..+. -.+.+.++|..|+|||++|+.+++.+........ ..+ .... ....+......+
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~-----~~c---~~c~-~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-----KSC---GHCR-GCQLMQAGTHPDYYT 78 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT-----BCC---SCSH-HHHHHHHTCCTTEEE
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC-----CCC---CCCH-HHHHHhcCCCCCEEE
Confidence 34555666665432 3457899999999999999999986643321000 000 0000 000000000000
Q ss_pred cccc-CccchhHH---HHHHHh-----hcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-cc
Q 000202 270 RNVK-NFQNISVN---FQSKRL-----ARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EV 336 (1866)
Q Consensus 270 ~~~~-~~~~~~~~---~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~ 336 (1866)
-... .......+ .+.+.+ .+++-++|+|+++. .+..+.++..+....+++.+|++|.+.+ +.... ..
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 0000 00001111 111121 34678899999984 5566777777666566778887776653 22211 22
Q ss_pred ceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCccee
Q 000202 337 DHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLAL 386 (1866)
Q Consensus 337 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLAl 386 (1866)
...+++++++.++..+.+.... ... .+.+..+++.++|.|..+
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAA 201 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHH
Confidence 4578999999999999988765 111 345677889999988644
No 214
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.74 E-value=0.00015 Score=86.83 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=107.1
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..+.|+++.++.+.+++.....+.+.++|.+|+|||++|+.+++.-. ...+. ..+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----------
Confidence 34667788888888888766655689999999999999999955311 11111 122333332111110
Q ss_pred CCCCccCHHHHHHHHHHH--h-CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhcc-CCCCcEEE
Q 000202 1057 HCKDRETDAQVAEKLWQV--L-NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRN-MDVNMVVK 1129 (1866)
Q Consensus 1057 ~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~ 1129 (1866)
..+........ + .+++.+||+|+++.. ...+.+...+.....+.++|+||.... +... ......+.
T Consensus 85 -------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~ 157 (319)
T 2chq_A 85 -------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (319)
T ss_dssp -------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEE
T ss_pred -------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEE
Confidence 01111111111 1 256889999999753 344555555544445677888876544 2111 11124899
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++.++..+++.+.+......- -.+....++..++|.+..+.....
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 158 FKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999987764322111 133456788899999876554433
No 215
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.73 E-value=0.00024 Score=87.45 Aligned_cols=177 Identities=15% Similarity=0.109 Sum_probs=96.3
Q ss_pred ccCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
....+++|.+..++.|...+.. .....+.|.|+|.+|+|||+||++++++....| +..+.... .
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l--~ 185 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASL--T 185 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHh--h
Confidence 3456899999999999988731 011245789999999999999999988754332 22211110 0
Q ss_pred ccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccC----CC
Q 000202 253 GRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLD----RF 315 (1866)
Q Consensus 253 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~----~~ 315 (1866)
. .. .+ .........+.......+.+|+||+++.. .....++..+. ..
T Consensus 186 ~---~~--------~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 S---KY--------VG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c---cc--------cc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0 00 00 00000011122222445679999999642 11222222221 11
Q ss_pred CCCCEEEEEccccchhcc-C--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCc
Q 000202 316 ASGSQVIITTRDKQVLTN-C--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVP 383 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 383 (1866)
.....||.||.....+.. . .....+.++..+.++..+++...+-...... ..+....+++.+.|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYS 318 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCC
Confidence 223455556654322211 0 1234678999999999999987663322111 2345677888888854
No 216
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.69 E-value=6.8e-05 Score=81.73 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=41.7
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
....++||+.+++.+.+.+... ..+.+.|+|.+|+|||+||+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999998753 3456789999999999999999987644
No 217
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00024 Score=85.86 Aligned_cols=179 Identities=12% Similarity=0.187 Sum_probs=101.5
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKEL 262 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1866)
....++|.+..++.|...+..+. ...+.++|.+|+||||+|+.+++.+... +... +... .. ........+ ++.
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~~-~~-~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VLEL-NA-SDDRGIDVV-RNQ 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EEEE-CT-TSCCSHHHH-HTH
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EEEE-cC-cccccHHHH-HHH
Confidence 34568899988999998888653 2228999999999999999999875432 2111 1111 10 000111111 111
Q ss_pred HHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc-hhccC-ccce
Q 000202 263 LSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ-VLTNC-EVDH 338 (1866)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~~-~~~~ 338 (1866)
......... ...+.+-++|+|+++. ....+.+...+.......++|++|.... +.... ....
T Consensus 97 i~~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 97 IKDFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 111110000 0123467899999963 4455555555444455677877775442 11111 1134
Q ss_pred eeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 339 IYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 339 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
.+++.+++.++..+.+...+-.... .-..+....+++.++|.+-
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMR 206 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 7889999999988887765421111 1123456778888888764
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=0.0005 Score=81.26 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=89.7
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
..+++|.+..+++|.+.+.. +-...+.|.|+|.+|+|||+||+++++.....| +....
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~-----i~v~~------ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----ISIKG------ 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE-----EEECH------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE-----EEEEh------
Confidence 45689999988888877642 123456789999999999999999998764322 22111
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH----------------HHHHHhhccCCC--
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR----------------QIELLIGRLDRF-- 315 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 315 (1866)
..+. ....+.. .......+.......+.+|+||+++... ....++..+...
T Consensus 83 --~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 --PELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --HHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1122 2222211 1111223333345578999999997421 123333333211
Q ss_pred CCCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 316 ASGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 316 ~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
..+..||.||.....+.. . .....+.++..+.++-.+++....
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 234567777765533221 1 224578899999999888887665
No 219
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.67 E-value=9.5e-05 Score=88.13 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred CceeehhhHHHHHHhhhcC-------------CCCcEEEEEEecCCCchhHHHHHHHHhhhcccc--ceEEEEeeccccc
Q 000202 187 DLIGVEWRIKEIESLLRTG-------------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFE--GSYFACNVRAAEE 251 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~-------------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~ 251 (1866)
.++|.+..++.+.+++... ......+.|+|.+|+|||++|+++++.+..... ..-++...... .
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-L 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG-T
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH-h
Confidence 5889998888888765421 234557899999999999999999986644221 11222221110 0
Q ss_pred cccHHHHHHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCC-----------CHHHHHHHhhccCCCCCCC
Q 000202 252 TGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVN-----------HPRQIELLIGRLDRFASGS 319 (1866)
Q Consensus 252 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs 319 (1866)
.. .........+...+ ..+..+|+||+++ +......+...+.....+.
T Consensus 111 ~~--------------------~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 111 VG--------------------QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CC--------------------SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hh--------------------hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 00 00000001111111 1134699999997 4555666666655555677
Q ss_pred EEEEEccccc----------hhccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 320 QVIITTRDKQ----------VLTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 320 ~IiiTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.||.||.... +... ....+++++++.++-.+++...+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 8888885432 2222 23678999999999999887665
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.62 E-value=1.8e-05 Score=83.79 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=39.1
Q ss_pred ccccccEEeEecCccCccccchhhhhh----ccccceeeeccccccceecccCccccccccCCCCcCEEeccCCccccc
Q 000202 1715 SFAELRILSIHACRHLEYVFTCSMIQF----LAKLEELTVEYCLAVKSIILDGEITYSSCIMLPSLKKLRLHHLPELAN 1789 (1866)
Q Consensus 1715 ~~p~L~~L~I~~C~~L~~l~~~~~l~~----L~sLe~L~I~~C~~L~~l~~~~~~~~~~~~~lp~L~~L~L~~c~~L~~ 1789 (1866)
.+++|++|++++|+++++-.. ..+.. .++|++|+|++|++++.--. ..+..+|+|++|+|++||.++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGI------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHH------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHH------HHHhcCCCCCEEECCCCCCCCc
Confidence 356677777777776665321 11222 23577777777766643211 1133567777777777776654
No 221
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=2.9e-05 Score=82.16 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=40.6
Q ss_pred CCcEEEecccCCccEeccCCCccccccccccccccccccccccccccccccc--ccccccEEeEecCccCccccchhhhh
Q 000202 1663 GLKFCIISECLKIKTVVDTKEHTTAVFPSLENLTLNHLWDLTCIWQGILPEG--SFAELRILSIHACRHLEYVFTCSMIQ 1740 (1866)
Q Consensus 1663 ~L~~L~l~~c~~l~~i~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~--~~p~L~~L~I~~C~~L~~l~~~~~l~ 1740 (1866)
.|+.|++++|. ++..+-. ....+++|+.|++++|..+++.....+... ..++|++|+|++|+++++... ..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred eEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 45555555554 3332211 123455555555555555544221111111 123555555555555554321 2234
Q ss_pred hccccceeeeccccccc
Q 000202 1741 FLAKLEELTVEYCLAVK 1757 (1866)
Q Consensus 1741 ~L~sLe~L~I~~C~~L~ 1757 (1866)
++++|++|+|++|+.++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 45555555555555554
No 222
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.002 Score=79.42 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred ccccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCC
Q 000202 1371 EEEWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCL 1447 (1866)
Q Consensus 1371 ~~~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L 1447 (1866)
+..+.+|+.+.+.. .+..++ .+.+|.+|+.+.+..+ +..++...|..+..|+.+.+..+ +..+. ..+.+...+
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 55667888888864 466665 4678999999999754 77888888899999988777544 33333 345555444
Q ss_pred cEEecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1448 QILILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1448 ~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
..........+ -...+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+
T Consensus 143 ~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l 192 (394)
T 4fs7_A 143 EITIPEGVTVI--GDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKL 192 (394)
T ss_dssp EEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccCcccccc--chhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEc
Confidence 44444333322 2346788899999998754 445544 3677888888766
No 223
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.56 E-value=8.7e-05 Score=77.22 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=36.5
Q ss_pred CceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 187 DLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
++||++..++++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988876422233457899999999999999998854
No 224
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=8.2e-05 Score=81.53 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.4
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.|++++++++.+.+.....+.+.|+|.+|+|||+||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHH
Confidence 34678888999999998776667789999999999999999965
No 225
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=0.00035 Score=86.99 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=101.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccccc--ceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMF--HVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLN 1076 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 1076 (1866)
...+.|+|.+|+||||||+.+++.. ...+ ..+++++.. .+..++...+... . ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 5678899999999999999996532 2222 123455433 3344444444321 1 122334444
Q ss_pred CCcEEEEEeCCCCcc----chhhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHH
Q 000202 1077 GEKFLLLLDDVWEQI----DLEAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELF 1142 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf 1142 (1866)
.+..+|+|||++... .-+.+...+.. ...|..||+||.... +...+....++.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 466799999997532 12222221110 134678888887631 2222333357899999999999999
Q ss_pred HHHhc--CCCCCchHHHHHHHHHHHcCCChHHHHHHHHHh------hC-CCCHHHHHHHhhhC
Q 000202 1143 CKEVG--GIIQSPDIHLYARAIVKGCCGLPLLTIVTAKAL------AG-ERNVSVWKHASRKF 1196 (1866)
Q Consensus 1143 ~~~~~--~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~~L------~~-~~~~~~w~~~~~~~ 1196 (1866)
.+.+. +...++ +....|++.++|.+-.+.-+...+ .+ .-+.+.++.++...
T Consensus 273 ~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87764 222222 235568888999886443322211 12 24566777776543
No 226
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.48 E-value=0.00033 Score=85.91 Aligned_cols=192 Identities=9% Similarity=0.036 Sum_probs=103.1
Q ss_pred ccchhhHHHHHHHHHhccCC-ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHh---
Q 000202 979 AVNYTQRNVRKIFRYVNDVT-ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQL--- 1054 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~-~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l--- 1054 (1866)
.+.|+++.++.+.+.+.... ...+.|+|..|+||||+|+.+.+.......+. ..++........+...-
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 89 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFVD 89 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCSS
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCCc
Confidence 46678888888888875544 35688999999999999999864321111100 00000000011111000
Q ss_pred ----ccC-CCCccCHHHHHHHHHHH-hCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChhh-hcc-CCC
Q 000202 1055 ----SLH-CKDRETDAQVAEKLWQV-LNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELDV-CRN-MDV 1124 (1866)
Q Consensus 1055 ----~~~-~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~ 1124 (1866)
... ........++...+... ..+++.+||+||++. ...++.+...+.....+..+|++|.+..- ... ...
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 169 (373)
T 1jr3_A 90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (373)
T ss_dssp CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT
T ss_pred eEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh
Confidence 000 00111222222211110 135678999999975 23344444333323345677777764432 111 112
Q ss_pred CcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1125 NMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1125 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
...+++.+++.++..+++.+.+....... -.+....|++.++|.|..+..+..
T Consensus 170 ~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 170 CLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred eeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 36889999999999999987653211111 123466789999999987765543
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00054 Score=82.16 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=98.8
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcc
Confidence 345788999999888876542 233456789999999999999999999765543 22222111000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+++ ....-...+++|++|+++.. ..+..++..+..
T Consensus 222 ~vGese~~vr~l--------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVREL--------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHH--------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHH--------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 0 001111111 12223457899999999741 123344444433
Q ss_pred CC--CCCEEEEEccccchhcc-----CccceeeecCCCCHHHHHHHHHhhcCCCCC-CChhHHHHHHHHHHHhCCC
Q 000202 315 FA--SGSQVIITTRDKQVLTN-----CEVDHIYQMKELVHADAHKLFTQCAFRGDH-LDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 315 ~~--~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 382 (1866)
+. .+..||.||...+.+.. -..+..++++..+.++-.++|..+.-+... ...+ ...+++.+.|.
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 32 34455667765544321 123578889999999999999876532211 1112 34556666663
No 228
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0012 Score=80.79 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=91.7
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....| +.....+....
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccc
Confidence 345788999999888876542 233467899999999999999999999765443 22222211000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+ ......-...+++|++|+++.. ..+..++..+..
T Consensus 255 ~~Gese~~ir--------------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 255 YIGESARIIR--------------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSSHHHHHHH--------------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHH--------------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 0 0011111 1112223567899999999731 123344444332
Q ss_pred C--CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 315 F--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 315 ~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+ ..+..||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh
Confidence 2 2355677787665543321 135678899999998888888665
No 229
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.41 E-value=0.0019 Score=74.71 Aligned_cols=153 Identities=13% Similarity=0.198 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.|.++|.+|+|||++|+.+++.. .. ..+.+..+.-.+. ............+.......
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV---------------IGGLGAARVRSLFKEARARA 98 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS---------------STTHHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh---------------ccChhHHHHHHHHHHHHhcC
Confidence 3457899999999999999996532 11 1233443321110 00001112222233333456
Q ss_pred cEEEEEeCCCCc-------------cc----hhhhcCCCCC--CCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1079 KFLLLLDDVWEQ-------------ID----LEAVGIPVPG--SENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1079 r~LlVlDdv~~~-------------~~----~~~l~~~l~~--~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
..+|+||+++.. .. +..+...+.. ...+..||.||...... +....+..+.++..+
T Consensus 99 ~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 99 PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 799999999753 00 1112111111 12345666677654421 111234678899999
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1135 MKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.++-.+++...+...............+++.+.|.+-
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 9999999987764333222233334678888888754
No 230
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.39 E-value=5.4e-05 Score=86.54 Aligned_cols=166 Identities=10% Similarity=0.009 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCH
Q 000202 985 RNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETD 1064 (1866)
Q Consensus 985 ~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 1064 (1866)
..++.+..+......+.+.|+|.+|+||||||+.+++... .....+.|+.++...+. +..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~------~~~------------ 97 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI------STA------------ 97 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS------CGG------------
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH------HHH------------
Confidence 4455555555444567899999999999999999965322 22234556665432110 000
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCcc--c--hhhhcCCCCC-CCCC-cEEEEccCChh---------hhccCCCCcEEE
Q 000202 1065 AQVAEKLWQVLNGEKFLLLLDDVWEQI--D--LEAVGIPVPG-SENG-SKIFMASRELD---------VCRNMDVNMVVK 1129 (1866)
Q Consensus 1065 ~~~~~~l~~~L~~kr~LlVlDdv~~~~--~--~~~l~~~l~~-~~~g-s~IivTTR~~~---------v~~~~~~~~~~~ 1129 (1866)
..+.+ .+..+||+||++... . .+.+...+.. ...+ .++|+||+... +...+.....+.
T Consensus 98 ------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~ 170 (242)
T 3bos_A 98 ------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQ 170 (242)
T ss_dssp ------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEE
T ss_pred ------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEE
Confidence 00011 345689999997531 1 2222221110 0122 24777776432 111111226899
Q ss_pred ecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 000202 1130 LETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTAK 1178 (1866)
Q Consensus 1130 l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g~ 1178 (1866)
+.+++.++..+++.+.+...... --.+....+++.++|.+-.+..+..
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999998776422111 1134566788899998866654433
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00042 Score=84.57 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=91.1
Q ss_pred ccCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccc
Q 000202 183 SESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEE 251 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (1866)
..-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.........
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhh
Confidence 3446889999999888775421 223467899999999999999999999765443 2222222100
Q ss_pred cc--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccC
Q 000202 252 TG--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLD 313 (1866)
Q Consensus 252 ~~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 313 (1866)
.. ......+.+ ....-...+++|++|+++.. ..+..++..+.
T Consensus 254 ~~vGese~~ir~l--------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 254 MYIGEGAKLVRDA--------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp SCSSHHHHHHHHH--------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHH--------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 00 001111111 11122456899999998631 11334444444
Q ss_pred CCCC--CCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 314 RFAS--GSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 314 ~~~~--gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+.. +.-||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 3332 44566677766544321 235678899999998888887654
No 232
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=0.00087 Score=78.65 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=88.8
Q ss_pred cchhhHHHHHHHHHhcc-------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 980 VNYTQRNVRKIFRYVND-------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 980 ~~~~~~~~~~i~~~l~~-------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
+.|.++.++++.+.+.. .....+.|+|.+|+|||+||+.+++.. .. ..+.+..+.-.+
T Consensus 19 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~~~---- 89 (285)
T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSELVK---- 89 (285)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC----
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHHHH----
Confidence 44555555555555421 344568899999999999999996532 11 122233221110
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc----------------cchhhhcCCCC--CCCCCcE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ----------------IDLEAVGIPVP--GSENGSK 1108 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~ 1108 (1866)
.. ...........+......+..+|+||+++.. ..+..+...+. ....+..
T Consensus 90 ----------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 90 ----------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp ----------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred ----------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 00 0001111222223333456789999999642 01111111111 1223566
Q ss_pred EEEccCChhhhc-----cCCCCcEEEecCCChHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCC
Q 000202 1109 IFMASRELDVCR-----NMDVNMVVKLETLSMKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1109 IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~Gl 1169 (1866)
||.||....... .......+.+...+.++..++|...+..... ..++ ..++..+.|.
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 777877543321 1123457899999999999999887754322 2223 4466667764
No 233
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.34 E-value=0.00052 Score=86.15 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCceeehhhHHHHHHhhhcC-----------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRTG-----------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.+++|.+..+++|.+++... ....+-|.|+|.+|+|||++|++++++....| +..+...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~------ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPE------ 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchH------
Confidence 46999999999998887532 23455689999999999999999988763322 2221111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCC--CCCCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDR--FASGS 319 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs 319 (1866)
+. ..+.+ .........+.....+++.+|+||+++.. .....|+..+.. ...+.
T Consensus 274 ---l~----~~~~g-----~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 ---IM----SKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ---HH----TSCTT-----HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ---hh----hhhcc-----hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 10 00000 00000112233334567789999999411 122333333221 12344
Q ss_pred EEEEEccccchhc-c----CccceeeecCCCCHHHHHHHHHhhcC
Q 000202 320 QVIITTRDKQVLT-N----CEVDHIYQMKELVHADAHKLFTQCAF 359 (1866)
Q Consensus 320 ~IiiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 359 (1866)
+||.||....-+. . ......+.++..+.++-.++|..++-
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 5666666443211 1 12245688999999999999987763
No 234
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.33 E-value=8e-05 Score=90.02 Aligned_cols=57 Identities=21% Similarity=0.110 Sum_probs=28.0
Q ss_pred hcCCCCcEEEccCCCCCCCChhhcCCCCCcEEecccccCcccCCcccc--CCCCCcEEEcc
Q 000202 1419 ELMTSLKVLNLSKTRIKSLPETLVNLKCLQILILRDCDFLFVLPPEVG--SLECLEVLDLR 1477 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lP~~i~--~L~~L~~L~l~ 1477 (1866)
..+++|+.|+|++|.-..+|. + .+++|+.|+|..|.+.......++ .+++|++|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445666666666553223333 2 255666666665543222112222 45666666654
No 235
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.30 E-value=0.0013 Score=81.81 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=96.2
Q ss_pred ccccchhhHHH---HHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC-CCHHHHHHHHHH
Q 000202 977 VTAVNYTQRNV---RKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY-WNTRKIQKQVLR 1052 (1866)
Q Consensus 977 ~~~~~~~~~~~---~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~ 1052 (1866)
+..++|.+..+ ..+...+.....+.+.+||.+|+||||||+.+.+.. ...| +.++-. .....+ +.+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f-----~~l~a~~~~~~~i-r~~~~ 96 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA--NADV-----ERISAVTSGVKEI-REAIE 96 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT--TCEE-----EEEETTTCCHHHH-HHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh--CCCe-----EEEEeccCCHHHH-HHHHH
Confidence 33455665555 556666666666789999999999999999996532 2222 222211 222222 11111
Q ss_pred HhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEE-ccCChh--hhc-cCCCCc
Q 000202 1053 QLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFM-ASRELD--VCR-NMDVNM 1126 (1866)
Q Consensus 1053 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iiv-TTR~~~--v~~-~~~~~~ 1126 (1866)
.. ......+++.+|+||++... ...+.+...+.. + ...+|. ||.+.. +.. ...-..
T Consensus 97 ~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 97 RA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp HH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred HH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCcee
Confidence 11 01112567899999999863 333333333322 1 223333 444432 111 111224
Q ss_pred EEEecCCChHHHHHHHHHHhcCCC-----CCc-hHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1127 VVKLETLSMKDAWELFCKEVGGII-----QSP-DIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1127 ~~~l~~L~~~~a~~Lf~~~~~~~~-----~~~-~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
++.+++++.++...++.+.+.... ... --.+....|++.++|.+-.+..+-
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 789999999999999988764311 111 123456678888999886554433
No 236
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.29 E-value=0.00013 Score=88.14 Aligned_cols=102 Identities=21% Similarity=0.255 Sum_probs=45.6
Q ss_pred CCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCC-CChhhc--CCCCCcEEecccc--cC-----cccCCcc
Q 000202 1395 SCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKS-LPETLV--NLKCLQILILRDC--DF-----LFVLPPE 1464 (1866)
Q Consensus 1395 ~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~-lp~~i~--~L~~L~~L~L~~~--~~-----~~~lP~~ 1464 (1866)
.+++|+.|.|++|..+ .++. + . +++|+.|+|..|.+.. ....++ .+++|++|+|+.+ .. ...+...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3455666666554222 2222 1 2 4566666666555431 112232 4566666665421 10 0011111
Q ss_pred c--cCCCCCcEEEccCCCCCc-CChhh---cCCCccceeccc
Q 000202 1465 V--GSLECLEVLDLRGTEIKM-LPKEI---GKLTSLRYLTVF 1500 (1866)
Q Consensus 1465 i--~~L~~L~~L~l~~~~i~~-lp~~i---~~L~~L~~L~l~ 1500 (1866)
+ +.+++|++|+|++|.+.. .+..+ ..+++|++|+++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 1 235666666666665541 11122 235566666664
No 237
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0014 Score=79.69 Aligned_cols=169 Identities=17% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc-
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG- 253 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~- 253 (1866)
.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+.....
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5788999999888875431 234567899999999999999999999875543 222111110000
Q ss_pred -cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCCC
Q 000202 254 -RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRFA 316 (1866)
Q Consensus 254 -~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 316 (1866)
......+ ......-...+++|++|+++.. ..+..++..+..+.
T Consensus 285 Gesek~ir--------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 285 GEGARMVR--------------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp SHHHHHHH--------------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHH--------------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 0011111 1122223567899999999741 11223333333222
Q ss_pred --CCCEEEEEccccchhcc----C-ccceeeecCCCCHHHHHHHHHhhcCCCC-CCChhHHHHHHHHHHHhCCC
Q 000202 317 --SGSQVIITTRDKQVLTN----C-EVDHIYQMKELVHADAHKLFTQCAFRGD-HLDAGYTELAHKALKYAQGV 382 (1866)
Q Consensus 317 --~gs~IiiTTR~~~v~~~----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~Gl 382 (1866)
.+..||.||...+.+.. - ..+..++++..+.++-.++|..+.-+-. ....+ ...+++.+.|.
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 23345667755543321 1 2367889999999999999987663221 11112 34466666664
No 238
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0015 Score=78.47 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=89.7
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEET 252 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (1866)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||++++++....| +.....+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 345788999999888875531 223467799999999999999999999865543 22222221000
Q ss_pred c--cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCC
Q 000202 253 G--RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDR 314 (1866)
Q Consensus 253 ~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 314 (1866)
. ......+.+ ....-...+++|++|+++.. ..+..++..+..
T Consensus 256 ~vGesek~ir~l--------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 256 YLGDGPRLCRQI--------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp SSSHHHHHHHHH--------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHH--------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 0 001111111 11222456899999998631 123334333332
Q ss_pred C--CCCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 315 F--ASGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 315 ~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
+ ..+..||.||...+.+... ..+..++++..+.++-.++|..+.
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 2 2344566677655544322 235678899999999889998766
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.24 E-value=0.0007 Score=92.07 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=42.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.....+|||+.++..+...|.... ...+.|+|.+|+||||||+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345679999999999999987543 234789999999999999999997643
No 240
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.21 E-value=0.0011 Score=83.47 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=83.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-----cceEEEE-eeccccccccHH
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-----EGSYFAC-NVRAAEETGRLD 256 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~-~~~~~~~~~~~~ 256 (1866)
.....+|||+.+++.+...|.... ..-+.|+|.+|+|||+||+.+++.+...+ ...-++. +..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 345679999999999999997533 23467999999999999999999864432 1111221 100
Q ss_pred HHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch------
Q 000202 257 DLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV------ 330 (1866)
Q Consensus 257 ~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v------ 330 (1866)
.... ..........+...-..++.+|++| -..+....+...+. ....++|.+|.....
T Consensus 246 -------~~~~-----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -------TKYR-----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -------cccc-----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000 0111111223333334567899999 22233333444433 223566666654431
Q ss_pred hccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 331 LTNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 331 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.... ....++.+++++.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1100 123468999999999999998654
No 241
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00079 Score=81.81 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=104.4
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
..+.|+++.++.+..++.....+.+.++|.+|+||||+|+.+.+.......+. ....+..+.......+ ++....+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHhh
Confidence 34567777788888888766545588999999999999999965321111111 1223333332233222 222222211
Q ss_pred CCC-CccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEec
Q 000202 1057 HCK-DRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1057 ~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~ 1131 (1866)
... ..... .....-.++.-+|++|++... ...+.+...+.......++|++|.... +.... .....+.+.
T Consensus 116 ~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 116 LTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp SCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred hcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 100 00000 000011245679999998652 223333332222234567777765433 21111 012478999
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
+++.++....+.+.+......- -.+....|++.++|.|-.+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999887764322111 13456778999999997655443
No 242
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.0017 Score=71.71 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCceeehh----hHHHHHHhhhcCCCC--cEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 185 SKDLIGVEW----RIKEIESLLRTGSAG--VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 185 ~~~~vGr~~----~l~~l~~~L~~~~~~--~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
.++|++.+. .++.+.+++...... .+.+.|+|.+|+|||+||+++++.........+|+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456776543 344455555543222 26789999999999999999999776554445554
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.17 E-value=0.00035 Score=79.86 Aligned_cols=79 Identities=25% Similarity=0.246 Sum_probs=59.2
Q ss_pred hcCCCCcEEEccCCCCCCCC---hhhcCCCCCcEEecccccCcccCCccccCCC--CCcEEEccCCCCC-cCCh------
Q 000202 1419 ELMTSLKVLNLSKTRIKSLP---ETLVNLKCLQILILRDCDFLFVLPPEVGSLE--CLEVLDLRGTEIK-MLPK------ 1486 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~--~L~~L~l~~~~i~-~lp~------ 1486 (1866)
.++++|+.|+|++|.|+.++ ..+..+++|++|+|++|.+.+. ..+..+. +|++|+|++|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56889999999999988654 6677899999999999986543 3455555 8999999999886 3442
Q ss_pred -hhcCCCccceecc
Q 000202 1487 -EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1487 -~i~~L~~L~~L~l 1499 (1866)
.+..+++|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2566777777764
No 244
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.00074 Score=73.09 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCcee----ehhhHHHHHHhhhcCC-CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIG----VEWRIKEIESLLRTGS-AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vG----r~~~l~~l~~~L~~~~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|++ ....++.+.+++..-. .....++|+|.+|+||||||+++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44554 3333444444443211 1246799999999999999999999765
No 245
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.0014 Score=77.00 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=90.2
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh---ccccceEEEEeeccccccccHHHHHHHHHHHH
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS---RHFEGSYFACNVRAAEETGRLDDLRKELLSKL 266 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 266 (1866)
|-+..++.+...+..+. .....++|.+|+||||+|+.+++... ..++....+...+ .... .+-.+++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~~-id~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENIG-IDDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCBC-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCCC-HHHHHHHHHHH
Confidence 34566777888887654 56888999999999999999987521 1123333332111 0111 11122333332
Q ss_pred hccccccCccchhHHHHHHHhhcCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEcccc-chhccCccceeeecC
Q 000202 267 LNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDK-QVLTNCEVDHIYQMK 343 (1866)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~l~ 343 (1866)
.... ..+++-++|+|+++ +....+.++..+....+.+.+|++|.+. .+....... +++++
T Consensus 75 ~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 2111 12456788999997 4566777777776666788888877554 333333334 89999
Q ss_pred CCCHHHHHHHHHhhc
Q 000202 344 ELVHADAHKLFTQCA 358 (1866)
Q Consensus 344 ~L~~~ea~~Lf~~~a 358 (1866)
+++.++..+.+....
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998887665
No 246
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00087 Score=81.74 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
-.+..|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45788999999888776541 33446779999999999999999999976544
No 247
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.14 E-value=0.0013 Score=78.40 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCceeehhhHHHHHHhhhcC-------CCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 186 KDLIGVEWRIKEIESLLRTG-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789988888888777642 112457999999999999999999996644
No 248
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.13 E-value=0.03 Score=68.78 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCCCC-cccEEEccCCcCCcccChhHHhcCCCCcEEEccCCC---CCCCC-hhhcCCCCCcEEecccccCcccCCccccC
Q 000202 1393 RPSCP-NLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTR---IKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGS 1467 (1866)
Q Consensus 1393 ~~~~~-~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~---i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~ 1467 (1866)
+.+|. .|+.+.+.. .+..+....|.++.+|+.+.+..+. ++.++ ..+..+.+|+.+.+..+ ....-...+..
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 34453 467777753 3667777777777778777776653 44554 34556666776665443 12222234566
Q ss_pred CCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1468 LECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1468 L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+|+.+.+..+ +..++. .+..+.+|+.+.+
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred hcccccccccce-eeeecccceecccccccccc
Confidence 777777777543 333432 3556666666655
No 249
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00023 Score=77.51 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=44.9
Q ss_pred hcCCCCcEEEccCCCCC-----CCChhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEc--cCCCCCc----
Q 000202 1419 ELMTSLKVLNLSKTRIK-----SLPETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDL--RGTEIKM---- 1483 (1866)
Q Consensus 1419 ~~l~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l--~~~~i~~---- 1483 (1866)
...++|++|+|++|.|. .+...+...++|++|+|++|.+... +...+...++|++|+| ++|.|..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 33456666666666665 2334455556666666666654322 3344555566666666 5566552
Q ss_pred -CChhhcCCCccceeccc
Q 000202 1484 -LPKEIGKLTSLRYLTVF 1500 (1866)
Q Consensus 1484 -lp~~i~~L~~L~~L~l~ 1500 (1866)
+...+...++|++|++.
T Consensus 142 ~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhCCCcCEEecc
Confidence 33334444556666554
No 250
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.11 E-value=0.00046 Score=78.87 Aligned_cols=79 Identities=30% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCcccEEEccCCcCCcccC--hhHHhcCCCCcEEEccCCCCCCCChhhcCCC--CCcEEecccccCcccCCc-------c
Q 000202 1396 CPNLLTLFLQRNCRLRVIP--PSFFELMTSLKVLNLSKTRIKSLPETLVNLK--CLQILILRDCDFLFVLPP-------E 1464 (1866)
Q Consensus 1396 ~~~L~~L~L~~~~~l~~~p--~~~~~~l~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lP~-------~ 1464 (1866)
+++|+.|+|++|. +..++ +..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3445555555542 33222 12346789999999999998876 3355555 899999999998776763 3
Q ss_pred ccCCCCCcEEEc
Q 000202 1465 VGSLECLEVLDL 1476 (1866)
Q Consensus 1465 i~~L~~L~~L~l 1476 (1866)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899998873
No 251
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.0013 Score=79.96 Aligned_cols=193 Identities=11% Similarity=0.079 Sum_probs=96.1
Q ss_pred ccchhhHHHHHHHHHh-ccCCccEEEEEcCCCchHHHHHHHHhcC--ccccc--ccce--------------------EE
Q 000202 979 AVNYTQRNVRKIFRYV-NDVTASKIGVYGVGGIGKTAALKALISY--PEVKV--MFHV--------------------II 1033 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l-~~~~~~vi~I~G~gGvGKTtLa~~v~~~--~~~~~--~F~~--------------------~~ 1033 (1866)
.+.|.+..++.+.+++ .....+.+.|+|..|+||||+|+.+... ....+ .++. .+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 4566777777777777 5555445899999999999999988551 10000 0110 11
Q ss_pred EEEecCC-CCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEE
Q 000202 1034 WVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIF 1110 (1866)
Q Consensus 1034 wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Ii 1110 (1866)
.+..+.. .......++++..+.....- .... .+. .+.++.-++|||++..- ...+.+...+.....+..+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 95 EITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp EECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEE
T ss_pred EecHhhcCCcchHHHHHHHHHHHHhccc----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEE
Confidence 1111110 00000122222222111000 0000 000 02346679999999862 22233332222122456777
Q ss_pred EccCChh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1111 MASRELD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1111 vTTR~~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
++|.+.. +.... .-...+++++++.++..+.+.+.+......-+-.+....|++.++|.+-.+..+.
T Consensus 169 l~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 7776532 21111 1126789999999999999887663211100002345668888999886554443
No 252
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.09 E-value=0.0019 Score=74.38 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=37.2
Q ss_pred cCCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+..++++.+.+.. . ....+-+.|+|.+|+||||||+++++...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 345788988888777665431 0 11234588999999999999999998764
No 253
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.02 E-value=0.0013 Score=78.19 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=37.7
Q ss_pred CCceeehhhHHHHHHhhhc------------CCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRT------------GSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~------------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.+..++.+...+.. .......+.|+|.+|+|||++|+++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999888888877653 011234688999999999999999998763
No 254
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.019 Score=68.14 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=84.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||+||+++++... .. ..+.+..+.-.+ .. .......+...+...-..+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--------------~~-~g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--------------KW-LGESEKLVKNLFQLARENK 105 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC--------------SS-CCSCHHHHHHHHHHHHHTS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh--------------hh-hhHHHHHHHHHHHHHHhcC
Confidence 35688999999999999999965321 11 122333332110 00 0111222222222223467
Q ss_pred cEEEEEeCCCCcc--------c-----hhhhcCC---CCCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHH
Q 000202 1079 KFLLLLDDVWEQI--------D-----LEAVGIP---VPGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1079 r~LlVlDdv~~~~--------~-----~~~l~~~---l~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~ 1137 (1866)
..+|+||+++... . ...+... +.....+-.||.||..... .+ ..+..+.+...+.++
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHH
Confidence 8999999997530 0 0111111 1111234455556654432 22 334678899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP-LLTIVTA 1177 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP-LAi~~~g 1177 (1866)
-.+++..++........ ......|++.+.|.. -.|..+.
T Consensus 184 r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999887754332111 234566888888874 3344443
No 255
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00029 Score=73.02 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-.++|++..++++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3689999999988888763222233588999999999999999887543
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.0026 Score=85.61 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=86.0
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc------ccceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH------FEGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....++||+.+++.+.+.|.... ..-+.|+|.+|+|||++|+.+++++... ....+|..+.....
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 44679999999999999987543 3457899999999999999999876432 12223322111100
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------HHHHHHhhccCCCCCCCEEEEEccc
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------RQIELLIGRLDRFASGSQVIITTRD 327 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~ 327 (1866)
.+..............+......++.+|++|+++.. .+...++..+.. ..+.++|.+|..
T Consensus 255 ---------~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 255 ---------AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp ---------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred ---------ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 000000000000111222222345789999999743 222223322222 234566666654
Q ss_pred cchhcc------C-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 328 KQVLTN------C-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 328 ~~v~~~------~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
...... . .....+.++.++.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 321110 1 122468899999999888886543
No 257
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.99 E-value=0.0009 Score=77.57 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=35.1
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999888776653222234688999999999999999998643
No 258
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.98 E-value=0.0038 Score=75.17 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=94.0
Q ss_pred ccccchhhHHHHHHHHHhc-----cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVN-----DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVL 1051 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~-----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 1051 (1866)
+..+.|++..++++..++. ......|.|+|.+|+|||++|+.+.+. .... .+.++.+.......+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCSHHHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccchhHH-----
Confidence 3456677777766666663 233456889999999999999999542 2222 222332221111111
Q ss_pred HHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--cchhhhcCCCC------------------CCCCCcEEEE
Q 000202 1052 RQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--IDLEAVGIPVP------------------GSENGSKIFM 1111 (1866)
Q Consensus 1052 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~l~------------------~~~~gs~Iiv 1111 (1866)
...+.. ..+..+|+||++... .....+...+. ...++..+|.
T Consensus 98 ----------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 98 ----------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp ----------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred ----------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111111 235568888888752 11111111110 0011346666
Q ss_pred ccCChhhhc---cCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000202 1112 ASRELDVCR---NMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVTA 1177 (1866)
Q Consensus 1112 TTR~~~v~~---~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~g 1177 (1866)
+|....... .-.....+.+.+++.++...++.+.+...... --.+....|++.+.|.|-.+..+.
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666533211 01224689999999999999998776432211 123456678888999985554443
No 259
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.98 E-value=0.0069 Score=70.32 Aligned_cols=149 Identities=11% Similarity=0.079 Sum_probs=76.9
Q ss_pred cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh
Q 000202 996 DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL 1075 (1866)
Q Consensus 996 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 1075 (1866)
......+.|+|.+|+|||+||+.+++. .. .. .+.+..+.. +.. .........+...+....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~-------------~~g-~~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK-------------MIG-FSETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG-------------CTT-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH-------------hcC-CchHHHHHHHHHHHHHHH
Confidence 445567889999999999999999653 11 11 122222210 000 000000111222233334
Q ss_pred CCCcEEEEEeCCCCc------------cchhhhcCCCC---CCCCCcEEEEccCChhhhcc---C-CCCcEEEecCCCh-
Q 000202 1076 NGEKFLLLLDDVWEQ------------IDLEAVGIPVP---GSENGSKIFMASRELDVCRN---M-DVNMVVKLETLSM- 1135 (1866)
Q Consensus 1076 ~~kr~LlVlDdv~~~------------~~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~---~-~~~~~~~l~~L~~- 1135 (1866)
..+..+|+||++... ...+.+...+. .......||.||........ . .....+.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 567899999998532 11122222221 12233456777776644322 1 1246788999988
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1136 KDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
++...++.+.. .. . .+....|++.+.|.
T Consensus 202 ~~i~~i~~~~~-~~--~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 202 EQLLEALELLG-NF--K---DKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHHHHHT-CS--C---HHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcC-CC--C---HHHHHHHHHHhcCC
Confidence 66655555432 11 1 23456677777773
No 260
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.97 E-value=0.0041 Score=77.21 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 185 SKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
..+++|.+..++++.+.+.. +..-.+-|.|+|++|+|||+||++++.+....| +.....++. ..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~--~~ 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFV--EL 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTT--TC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHH--HH
Confidence 35688988887777665431 111234588999999999999999998764332 111111110 00
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH----------------HHHHHHhhccCCC--C
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP----------------RQIELLIGRLDRF--A 316 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 316 (1866)
+. +. ........+.......+.+|+||+++.. ..+..++..+..+ .
T Consensus 89 ~~-----------g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 FV-----------GV-----GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp CT-----------TH-----HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred Hh-----------cc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 00 0000112333344567899999999531 1234444333221 2
Q ss_pred CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+..||.||...+.+... .....+.++..+.++-.+++..++
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 355677777665443211 124477888888888778887665
No 261
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.96 E-value=0.0018 Score=82.50 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=98.7
Q ss_pred ccccchhhHHHHHHHHHhcc-----------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecC
Q 000202 977 VTAVNYTQRNVRKIFRYVND-----------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSR 1039 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~-----------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 1039 (1866)
+..+.|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 34567777888888887743 134688999999999999999996532 12 233444444
Q ss_pred CCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHH--HhCCCcEEEEEeCCCCcc-----chhhhcCCCCCCCCCcEEEEc
Q 000202 1040 YWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQ--VLNGEKFLLLLDDVWEQI-----DLEAVGIPVPGSENGSKIFMA 1112 (1866)
Q Consensus 1040 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~L~~kr~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IivT 1112 (1866)
..+.. +....+........ ... ......+ ...+++.+|++|++.... .+..+...+.. .+..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~---~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVG---YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STT---TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHH---HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 33332 22222221111000 000 0000000 123578999999997531 11222221111 22345555
Q ss_pred cCChh---hhccCCCCcEEEecCCChHHHHHHHHHHhcC--CCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 000202 1113 SRELD---VCRNMDVNMVVKLETLSMKDAWELFCKEVGG--IIQSPDIHLYARAIVKGCCGLP-LLTIVT 1176 (1866)
Q Consensus 1113 TR~~~---v~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~--~~~~~~~~~~~~~I~~~c~GlP-LAi~~~ 1176 (1866)
+.+.. +.........+.+++++.++..+.+.+.+.. ....+ +....|++.++|.+ -|+..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 54322 2222222457899999999999988776532 22222 23556888899954 444444
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.95 E-value=0.0007 Score=73.30 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=59.0
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-..+-|+|+.|.||||||+.+.+.-.....+. .+++ +..+++..+...+.............+.-+|||||++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~ 110 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLG 110 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCC
Confidence 46789999999999999999986543222222 2233 4555555554443322111122233456689999998
Q ss_pred C--CChHHHHHHHHhcccCCCCCcEEEEecCC
Q 000202 789 D--IDDEELHNFRLLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 789 ~--~~~~~w~~~~~~l~~~~~~gs~iivttr~ 818 (1866)
. .+...-..+...+.....+|..||+||..
T Consensus 111 ~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 111 SERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4 33333234544443322357778888764
No 263
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.92 E-value=0.0055 Score=82.28 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=83.8
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc------cceEEEEeeccccccccHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF------EGSYFACNVRAAEETGRLDD 257 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 257 (1866)
....+|||+.+++.+...|.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 44679999999999999997533 23478999999999999999999763321 111111100
Q ss_pred HHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch------h
Q 000202 258 LRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV------L 331 (1866)
Q Consensus 258 l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v------~ 331 (1866)
..... ..........+......++.+|++| ...+....+.+.+. ....++|.||..... -
T Consensus 245 -----g~~~~-----G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -----GTKYR-----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----ccccc-----chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 00000 0111112233333344678899999 22233334444433 234567766654431 0
Q ss_pred ccC-ccceeeecCCCCHHHHHHHHHhhc
Q 000202 332 TNC-EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 332 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
... .....+.++.++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 000 112568999999999999998554
No 264
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.89 E-value=0.00066 Score=78.88 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred cCCCceeehhhHHHHHHhhhc----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..++.+.+.+.. +....+.+.|+|.+|+|||+||++++++....|-. + ..... ..
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~--~~ 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSF--IE 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTT--TT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHH--HH
Confidence 346799999988888876641 11122347899999999999999999976443311 1 01110 00
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCHH-----------------HHHHHhhccCCCC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHPR-----------------QIELLIGRLDRFA 316 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~~ 316 (1866)
...+... .. ....+......++.+|+||+++... .+..++..+....
T Consensus 83 -----------~~~~~~~-~~----~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 83 -----------MFVGLGA-SR----VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp -----------SCSSSCS-SS----SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred -----------hhcchHH-HH----HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0000000 00 1122233334567899999996421 1223333332221
Q ss_pred ---CCCEEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 317 ---SGSQVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 317 ---~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
....||.||.....+.. . .....+.++..+.++-.+++...+
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 22456667765542211 1 123457788888888777776554
No 265
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.82 E-value=0.002 Score=76.00 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=38.3
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888876533334468899999999999999999853
No 266
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.82 E-value=0.015 Score=70.22 Aligned_cols=158 Identities=10% Similarity=0.002 Sum_probs=82.1
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLN 1076 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~ 1076 (1866)
..+.|.|+|..|+|||+||+.+++.. .. ..+.++.+.-.+. . ..........+ ...-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~--------------~--~g~~~~~~~~~~~~a~~ 174 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK--------------W--VGEGEKMVRALFAVARC 174 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS--------------S--TTHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc--------------c--cchHHHHHHHHHHHHHh
Confidence 34578899999999999999996532 11 2234444321110 0 00111111122 22223
Q ss_pred CCcEEEEEeCCCCc-------------cchhhhcCCCC----CCCCCcEEEEccCChhhhc-c--CCCCcEEEecCCChH
Q 000202 1077 GEKFLLLLDDVWEQ-------------IDLEAVGIPVP----GSENGSKIFMASRELDVCR-N--MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1077 ~kr~LlVlDdv~~~-------------~~~~~l~~~l~----~~~~gs~IivTTR~~~v~~-~--~~~~~~~~l~~L~~~ 1136 (1866)
.+..+|+||++... .....+...+. ....+..||.||....... . -.....+.+...+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 56789999999431 01112211111 1123445565665432211 0 123357788899999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCC-hHHHHHHH
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCGL-PLLTIVTA 1177 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLAi~~~g 1177 (1866)
+..+++...+......- ..+....|++.+.|. +-.|..+.
T Consensus 255 ~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99888877664321111 123456688888884 44454443
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.81 E-value=0.0039 Score=74.01 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
....|.|+|.+|+|||++|+.+++...........-++.++.. .+..... ..........+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~~-g~~~~~~~~~~~~~--- 129 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQYI-GHTAPKTKEVLKRA--- 129 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSST-TCHHHHHHHHHHHH---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhcc-cccHHHHHHHHHhc---
Confidence 3446889999999999999988553222111111112333210 0111000 00111112222222
Q ss_pred CcEEEEEeCCCC-----------ccchhhhcCCCCCCCCCcEEEEccCChh----------hhccCCCCcEEEecCCChH
Q 000202 1078 EKFLLLLDDVWE-----------QIDLEAVGIPVPGSENGSKIFMASRELD----------VCRNMDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1078 kr~LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~IivTTR~~~----------v~~~~~~~~~~~l~~L~~~ 1136 (1866)
+..+|+||++.. ......+...+.....+..||.||.... +...+ ...+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 345999999973 2223333333333344567888876432 22221 367899999999
Q ss_pred HHHHHHHHHhc
Q 000202 1137 DAWELFCKEVG 1147 (1866)
Q Consensus 1137 ~a~~Lf~~~~~ 1147 (1866)
+-.+++...+.
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 268
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.74 E-value=0.0066 Score=72.56 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred ccccchhhHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.++.++.+.+++..... .++.+.|..|+|||++|+.+.+... ...+.++.+. .... ..+.++....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~-~~~~-~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSD-CKID-FVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTT-CCHH-HHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccc-cCHH-HHHHHHHHHH
Confidence 34566777778888888865543 5677778899999999999954321 1233444333 2222 2222221111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc---chhhhcCCCCCCCCCcEEEEccCChhh-----hccCCCCcE
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI---DLEAVGIPVPGSENGSKIFMASRELDV-----CRNMDVNMV 1127 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~IivTTR~~~v-----~~~~~~~~~ 1127 (1866)
... ...+++.+|++|++.... ..+.+...+.....+.++|+||....- ...+ .+
T Consensus 98 ~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~ 159 (324)
T 3u61_B 98 SAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RV 159 (324)
T ss_dssp HBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EE
T ss_pred hhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cE
Confidence 000 012477899999998643 333333322222245678888776442 1222 47
Q ss_pred EEecCCChHHHHHHHH-------HHhc--CCCCCchHHHHHHHHHHHcCCChHHHH
Q 000202 1128 VKLETLSMKDAWELFC-------KEVG--GIIQSPDIHLYARAIVKGCCGLPLLTI 1174 (1866)
Q Consensus 1128 ~~l~~L~~~~a~~Lf~-------~~~~--~~~~~~~~~~~~~~I~~~c~GlPLAi~ 1174 (1866)
+++++++.++-.+++. +.+. +..-.+ .+....|++.++|.+-.+.
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 8999999888544332 2221 111111 2455667888888765443
No 269
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0065 Score=73.12 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=93.4
Q ss_pred ccccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcccccccc-eEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 977 VTAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPEVKVMFH-VIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
+..+.|.+..++.+...+...+.+.+.++|..|+||||+|+.+...-.- ..+. ...-++.+.......+. .+...+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVR-NQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHH-THHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHH-HHHHHHH
Confidence 3345566666677777776665555899999999999999999543111 1111 11222222222222111 1111111
Q ss_pred cCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCChh-hhccC-CCCcEEEec
Q 000202 1056 LHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASRELD-VCRNM-DVNMVVKLE 1131 (1866)
Q Consensus 1056 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~ 1131 (1866)
... ..+.+.+-++|+|++.. ....+.+...+.......++|++|.... +.... .-...+.+.
T Consensus 102 ~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 102 STR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred hhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 000 00123467889999864 2233333322222224566777765432 11110 112478899
Q ss_pred CCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHH
Q 000202 1132 TLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLL 1172 (1866)
Q Consensus 1132 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLA 1172 (1866)
+++.++..+.+.+.+......- -.+..+.|++.++|.+--
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 9999998888876663211111 123456688888887753
No 270
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.70 E-value=0.0063 Score=72.92 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhccCCc-cEEEEEcCCCchHHHHHHHHhcCcc---cc-----------------cccceEEEEEecCCCC
Q 000202 984 QRNVRKIFRYVNDVTA-SKIGVYGVGGIGKTAALKALISYPE---VK-----------------VMFHVIIWVTVSRYWN 1042 (1866)
Q Consensus 984 ~~~~~~i~~~l~~~~~-~vi~I~G~gGvGKTtLa~~v~~~~~---~~-----------------~~F~~~~wv~vs~~~~ 1042 (1866)
.+..+.+.+.+...+. ..+.++|..|+||||+|+.+.+.-. .. .+++ ..++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc---
Confidence 3455666666655554 4688999999999999999854211 00 0122 12222110
Q ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-----CCCcEEEEEeCCCCc--cchhhhcCCCCCCCCCcEEEEccCC
Q 000202 1043 TRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-----NGEKFLLLLDDVWEQ--IDLEAVGIPVPGSENGSKIFMASRE 1115 (1866)
Q Consensus 1043 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~ 1115 (1866)
.......+++. .+.+.+ .+++-++|+|+++.- ...+.+...+.....+..+|++|.+
T Consensus 84 ---------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 84 ---------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp ---------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred ---------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 00111122221 222222 356788999999753 3334444434333346677777765
Q ss_pred hh-hhccC-CCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000202 1116 LD-VCRNM-DVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIV 1175 (1866)
Q Consensus 1116 ~~-v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~ 1175 (1866)
.+ +.... .-...+++++++.++..+.+.+.. ... .+.+..+++.++|.|..+..
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~~---~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TMS---QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CCC---HHHHHHHHHHTTTCHHHHHH
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 43 32211 123579999999999999888765 111 23456788999999965543
No 271
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.69 E-value=0.00057 Score=74.27 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=59.8
Q ss_pred HHhcCCCCcEEEccCC-CCC-----CCChhhcCCCCCcEEecccccCccc----CCccccCCCCCcEEEccCCCCCc---
Q 000202 1417 FFELMTSLKVLNLSKT-RIK-----SLPETLVNLKCLQILILRDCDFLFV----LPPEVGSLECLEVLDLRGTEIKM--- 1483 (1866)
Q Consensus 1417 ~~~~l~~L~~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~~~~~----lP~~i~~L~~L~~L~l~~~~i~~--- 1483 (1866)
.+...+.|++|+|++| .+. .+...+....+|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3466788999999999 876 3556677788999999999985432 33445566789999999998873
Q ss_pred --CChhhcCCCccceecc
Q 000202 1484 --LPKEIGKLTSLRYLTV 1499 (1866)
Q Consensus 1484 --lp~~i~~L~~L~~L~l 1499 (1866)
+...+...++|++|++
T Consensus 111 ~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 111 LALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHhCCCceEEEe
Confidence 3445555666666665
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.69 E-value=0.0047 Score=81.11 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=87.1
Q ss_pred CCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeecccccccc
Q 000202 186 KDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGR 254 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (1866)
.++.|.+..+++|.+.+.. +....+-|.++|.+|+|||+||++++++....| +..+..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~------ 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPE------ 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHH------
Confidence 4688999999888876531 123467799999999999999999998764432 2222111
Q ss_pred HHHHHHHHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCCH-------------HHHHHHhhccCCCC--CCC
Q 000202 255 LDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNHP-------------RQIELLIGRLDRFA--SGS 319 (1866)
Q Consensus 255 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs 319 (1866)
+.+...+ ..............+..+.+|+||+++.. ..+..++..+.... .+.
T Consensus 274 -------l~sk~~g-----ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -------IMSKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -------HHSSCTT-----HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -------hhcccch-----HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1100000 00000112222233567899999998631 12233333222221 233
Q ss_pred EEEEEccccchhcc-C----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 320 QVIITTRDKQVLTN-C----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 320 ~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
-||.||...+.+.. . .-+..++++..+.++-.++|..+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 45556655433321 1 235678899999999999998766
No 273
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.69 E-value=0.0066 Score=72.73 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=92.4
Q ss_pred cCCCceeehhhHHHHHHhhhcC---CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHH
Q 000202 184 ESKDLIGVEWRIKEIESLLRTG---SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRK 260 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 260 (1866)
....++|.+..++.+...+..+ ......++|+|.+|+||||||+.++......|. ...+. ......++.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-----~~sg~--~~~~~~~l~- 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-----VTSGP--VLVKQGDMA- 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-----EEETT--TCCSHHHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-----EEech--HhcCHHHHH-
Confidence 3456889888888877776532 223456899999999999999999997644321 11111 000001110
Q ss_pred HHHHHHhccccccCccchhHHHHHHHhhcCcEEEEEecCCC--HHHHHHHhhccCCCC--------C----------CCE
Q 000202 261 ELLSKLLNDRNVKNFQNISVNFQSKRLARKKVLIVFDDVNH--PRQIELLIGRLDRFA--------S----------GSQ 320 (1866)
Q Consensus 261 ~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~--------~----------gs~ 320 (1866)
.+...+ .++-++++|+++. ....+.+...+.... . ...
T Consensus 95 ---------------------~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 ---------------------AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ---------------------HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ---------------------HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 001111 2344677888763 233333332211110 0 112
Q ss_pred EE-EEccccchhccC--ccceeeecCCCCHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhCCCcce
Q 000202 321 VI-ITTRDKQVLTNC--EVDHIYQMKELVHADAHKLFTQCAFRGDHLDAGYTELAHKALKYAQGVPLA 385 (1866)
Q Consensus 321 Ii-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLA 385 (1866)
++ .|++...+.... .....+.+++.+.++-.+++.+.+-... ..-..+.+..|++.++|.|-.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHH
Confidence 22 344433221111 1123578999999999999987652111 112245678889999998853
No 274
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.004 Score=64.71 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
-..++|+|..|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999996654
No 275
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.66 E-value=0.0081 Score=75.30 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred CCCceeehhhHHHHHHhh---hcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 185 SKDLIGVEWRIKEIESLL---RTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L---~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+++|.+..++.+..++ ..+....+-+.++|++|+|||+||+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 368999999887655544 33333345689999999999999999998764
No 276
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.66 E-value=0.015 Score=69.23 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=82.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhCCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLNGE 1078 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~~k 1078 (1866)
+-|.++|.+|+|||+||+++++. .... .+.++.+ .+ ... ...........+ ...-..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------~l----~~~------~~g~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------DL----VSK------WMGESEKLVKQLFAMARENK 110 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------HH----HTT------TGGGHHHHHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------HH----hhc------ccchHHHHHHHHHHHHHhcC
Confidence 46889999999999999999653 2211 2223221 11 100 011112222222 2223456
Q ss_pred cEEEEEeCCCCccc-------------hhhhcCC---CCCCCCCcEEEEccCChhhhcc---CCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQID-------------LEAVGIP---VPGSENGSKIFMASRELDVCRN---MDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 1139 (1866)
..+|+||++..... ...+... +.....+..||.||........ -.....+.+...+.++-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~ 190 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHH
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHH
Confidence 78999999974210 1112111 1112334556667765433110 023457788899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 000202 1140 ELFCKEVGGIIQSPDIHLYARAIVKGCCGL-PLLTIVT 1176 (1866)
Q Consensus 1140 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLAi~~~ 1176 (1866)
++|...+........ ......|++.+.|. +-.|..+
T Consensus 191 ~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 191 TMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 999988765432211 22345678888874 4334333
No 277
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.65 E-value=0.0084 Score=73.09 Aligned_cols=49 Identities=10% Similarity=-0.085 Sum_probs=32.3
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcC-CChHHHHH
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCC-GLPLLTIV 1175 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~-GlPLAi~~ 1175 (1866)
..+.+.+++.++..+++.+.+......- -.+....|++.+. |.|-.+..
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~-~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVEM-SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHSCHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCHHHHHH
Confidence 3579999999999999987764321111 1334566788887 77754443
No 278
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.0064 Score=72.63 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=82.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
...+.|+|.+|+||||||+.+++..... .+ .+++++. ..+...+...+... .. ..+...+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TI----NEFRNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CH----HHHHHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cH----HHHHHHhc-C
Confidence 4568899999999999999996532211 11 2344543 23333443333211 11 11222222 3
Q ss_pred cEEEEEeCCCCcc---ch-hhhcCCCCC-CCCCcEEEEccCChh---------hhccCCCCcEEEecCCChHHHHHHHHH
Q 000202 1079 KFLLLLDDVWEQI---DL-EAVGIPVPG-SENGSKIFMASRELD---------VCRNMDVNMVVKLETLSMKDAWELFCK 1144 (1866)
Q Consensus 1079 r~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~~a~~Lf~~ 1144 (1866)
..+|+|||+.... .+ +.+...+.. ...|..||+||.... +...+....++.+++ +.++..+++.+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 5689999997532 11 222221110 124567888776431 122222336789999 99999999987
Q ss_pred HhcCCCCCchHHHHHHHHHHHcCCChH
Q 000202 1145 EVGGIIQSPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1145 ~~~~~~~~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.+......- -.+....|++.+ |..-
T Consensus 178 ~~~~~~~~l-~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFNLEL-RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-SSHH
T ss_pred HHHhcCCCC-CHHHHHHHHHhC-CCHH
Confidence 764221111 123456677777 7654
No 279
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.53 E-value=0.029 Score=69.81 Aligned_cols=152 Identities=12% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+.|.++|++|+|||+||+.+++... . .-++.++.. + +.... .+. .......+. ...-..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~-~---l~~~~---~g~---~~~~~~~~f---~~a~~~~ 227 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSS-D---LVSKW---LGE---SEKLVKNLF---QLARENK 227 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-------------------CCCTHHHHH---HHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHH-H---HHhhh---cch---HHHHHHHHH---HHHHHcC
Confidence 45788999999999999999965321 1 122333321 1 11100 010 111122222 2222456
Q ss_pred cEEEEEeCCCCcc-------------chhhhcCCCCC---CCCCcEEEEccCChhhhcc---CCCCcEEEecCCChHHHH
Q 000202 1079 KFLLLLDDVWEQI-------------DLEAVGIPVPG---SENGSKIFMASRELDVCRN---MDVNMVVKLETLSMKDAW 1139 (1866)
Q Consensus 1079 r~LlVlDdv~~~~-------------~~~~l~~~l~~---~~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~ 1139 (1866)
..+|+||++.... ....+...+.. ...+..||.||........ -..+..+.+...+.++..
T Consensus 228 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 228 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHH
Confidence 7899999997530 11223333322 2345667767765432110 123457888888999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1140 ELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1140 ~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+|..++........ ......|++.+.|..
T Consensus 308 ~il~~~l~~~~~~l~-~~~l~~la~~t~G~s 337 (444)
T 2zan_A 308 AMFRLHLGSTQNSLT-EADFQELGRKTDGYS 337 (444)
T ss_dssp HHHHHHHTTSCEECC-HHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCCCC-HHHHHHHHHHcCCCC
Confidence 999887754321111 233456888888854
No 280
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.52 E-value=0.029 Score=67.66 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=78.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-|.++|.+|+|||+||+++++.. .. ..+.+..+ .+.. .. .......+...+...-..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~------~l~~--------~~-~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS------DLVS--------KW-MGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH------HHHS--------CC----CHHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH------HHhh--------hh-cchHHHHHHHHHHHHHHcCC
Confidence 347899999999999999996532 11 12223222 1111 00 01111222222222334578
Q ss_pred EEEEEeCCCCccc-------------hhhhcCCC---CCCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHHH
Q 000202 1080 FLLLLDDVWEQID-------------LEAVGIPV---PGSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1080 ~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a 1138 (1866)
.+|+||++..... ...+...+ .....+..||.||..... .+ .....+.+...+.++-
T Consensus 145 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp EEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred eEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 9999999974210 11121111 111234556666665432 22 3346788999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCCC
Q 000202 1139 WELFCKEVGGIIQSPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1139 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~Gl 1169 (1866)
.+++...+........ ......|++.+.|.
T Consensus 223 ~~il~~~l~~~~~~~~-~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 223 TTMFEINVGDTPSVLT-KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHTTSCBCCC-HHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHcCCC
Confidence 9999887754422111 22345678888885
No 281
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.50 E-value=0.0056 Score=82.20 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCceeehhhHHHHHHhhhcCC-------CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHH
Q 000202 186 KDLIGVEWRIKEIESLLRTGS-------AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDL 258 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~-------~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 258 (1866)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+++++.....-...+.+. ..++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999999988887776321 12336899999999999999999987633222222332 22211110000
Q ss_pred HHHHHHHHhccccccCccchhHHHHHHHh-hcCcEEEEEecCCC--HHHHHHHhhccCC-----------CCCCCEEEEE
Q 000202 259 RKELLSKLLNDRNVKNFQNISVNFQSKRL-ARKKVLIVFDDVNH--PRQIELLIGRLDR-----------FASGSQVIIT 324 (1866)
Q Consensus 259 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~gs~IiiT 324 (1866)
...+...+ +...-+|+||+++. .+....|+..+.. .....+||+|
T Consensus 568 ---------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ---------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ------------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00011111 23345899999974 4444554443322 1134688888
Q ss_pred cccc-----------------chhccCccceeeecCCCCHHHHHHHHHhhc
Q 000202 325 TRDK-----------------QVLTNCEVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 325 TR~~-----------------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
|... .+... .+.++.+.+++.++-.+++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 11122 23578899999988887776543
No 282
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.49 E-value=0.0024 Score=69.23 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=37.3
Q ss_pred cccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 978 TAVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 978 ~~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.|++.+++.+.+.+.......+.|+|.+|+||||||+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHH
Confidence 34678888999999998776667788999999999999999965
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.46 E-value=0.048 Score=66.73 Aligned_cols=177 Identities=11% Similarity=-0.007 Sum_probs=89.8
Q ss_pred ccchhhHHHHHHHHHhc------------cCCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 979 AVNYTQRNVRKIFRYVN------------DVTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
.+.|.+..++.+...+. ....+-|.|+|..|+|||+||+.+++.. .. ..+.++.+.-.+ ..
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~--~~ 188 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTS--KY 188 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC------
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhc--cc
Confidence 45566666666666551 1223578899999999999999995431 11 122333322111 00
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc--------c-----chhhhcCCC---CC-CCCCcEE
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ--------I-----DLEAVGIPV---PG-SENGSKI 1109 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--------~-----~~~~l~~~l---~~-~~~gs~I 1109 (1866)
. ......+...+...-.....+|+||+++.. . ....+...+ .. ....-.|
T Consensus 189 ~-------------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 189 V-------------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred c-------------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 0 001111112222222345689999999642 0 011111111 11 1123455
Q ss_pred EEccCChhhhcc---CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000202 1110 FMASRELDVCRN---MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVT 1176 (1866)
Q Consensus 1110 ivTTR~~~v~~~---~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~ 1176 (1866)
|.||........ -.....+.+...+.++..+++...+......-. .+....|++.+.|..- +|..+
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 556654332110 122356889999999999999877754322111 2345678888888654 44443
No 284
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.047 Score=67.07 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=38.6
Q ss_pred CCCCCcccEEEccCC--cCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCCccccCCC
Q 000202 1393 RPSCPNLLTLFLQRN--CRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLPPEVGSLE 1469 (1866)
Q Consensus 1393 ~~~~~~L~~L~L~~~--~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP~~i~~L~ 1469 (1866)
+.+|.+|+.+.+..| ..+..++...|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+. ...-...+..+.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceeccc
Confidence 455566666655443 1244555555555555555544332 33333 234455555555554321 111122344455
Q ss_pred CCcEEEcc
Q 000202 1470 CLEVLDLR 1477 (1866)
Q Consensus 1470 ~L~~L~l~ 1477 (1866)
+|+.+.+.
T Consensus 161 ~L~~i~~~ 168 (394)
T 4gt6_A 161 SLHTVTLP 168 (394)
T ss_dssp TCCEEECC
T ss_pred cccccccc
Confidence 55555554
No 285
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.44 E-value=0.052 Score=63.69 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=89.6
Q ss_pred ccchhhHHHHHHHHHhcc------------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 979 AVNYTQRNVRKIFRYVND------------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~------------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
.+.|.+..++.+...+.. .....|.|+|.+|+||||+|+.+++.. .. ..+.++.+.-.+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS---- 92 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS----
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh----
Confidence 344555555555554411 234578899999999999999996532 11 122334332110
Q ss_pred HHHHHHHhccCCCCccCHHHHHHH-HHHHhCCCcEEEEEeCCCCccc-------------hhhhc---CCCCCC--CCCc
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEK-LWQVLNGEKFLLLLDDVWEQID-------------LEAVG---IPVPGS--ENGS 1107 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~---~~l~~~--~~gs 1107 (1866)
.. .......... +......+..+|+||++..... ...+. ..++.. +.+.
T Consensus 93 ----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 0111122222 2222345678999999964210 00111 111111 1334
Q ss_pred EEEEccCChhh-----hccCCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000202 1108 KIFMASRELDV-----CRNMDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPL-LTIVT 1176 (1866)
Q Consensus 1108 ~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPL-Ai~~~ 1176 (1866)
.||.||..... .+. ....+.+...+.++...++...+......-. .+....+++.+.|.+- ++..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 56667765432 222 2356778888888888888776543221111 2345668888888875 44333
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.40 E-value=0.0046 Score=72.48 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567899999999999999999998743
No 287
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.027 Score=70.30 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCceeehhhHHHHHHhhhc---C-------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT---G-------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETG 253 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~---~-------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (1866)
...+++|.+..+.++.++... . ..-.+-|.|+|.+|+||||||++++......| +.+ +...+..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i-~g~~~~~-- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITA-SGSDFVE-- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEE-EGGGGTS--
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ehhHHHH--
Confidence 346788988887777665431 0 01123489999999999999999998764221 222 1111110
Q ss_pred cHHHHHHHHHHHHhccccccCccchhHHHHHHHhh----cCcEEEEEecCCCH----------------HHHHHHhhccC
Q 000202 254 RLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA----RKKVLIVFDDVNHP----------------RQIELLIGRLD 313 (1866)
Q Consensus 254 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 313 (1866)
.. .......++..++ ..+.++++|+++.. ..+..++..+.
T Consensus 103 ~~--------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 103 MF--------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp SC--------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred hh--------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 00 0000111222222 23579999999521 12344444433
Q ss_pred CCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHHHHHHHhhc
Q 000202 314 RFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADAHKLFTQCA 358 (1866)
Q Consensus 314 ~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 358 (1866)
.+. .+..||.||...+++... .....+.++..+.++-.+++..++
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 222 234556666666553321 124577888888888888887665
No 288
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.013 Score=67.05 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=34.5
Q ss_pred cCCCceeehhhHHHHHHhhhc--C--------CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRT--G--------SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+....++..+... . -.-.+-+.|+|.+|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677877766666554321 0 00112389999999999999999998764
No 289
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.29 E-value=0.035 Score=65.25 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=80.3
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
..+.|.++|.+|+|||+||+.+++.. ... ++.+. ...+.. ...... . ..+...+......
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~~~l~~----~~~g~~--~---~~~~~~f~~a~~~ 107 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----GPELLT----MWFGES--E---ANVREIFDKARQA 107 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----HHHHHH----HHHTTC--T---THHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----hHHHHh----hhcCch--H---HHHHHHHHHHHhc
Confidence 34578999999999999999996532 111 22222 222222 221111 1 1122223333345
Q ss_pred CcEEEEEeCCCCcc----------------chhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI----------------DLEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
...+|+||++.... ....+...+. ....+..||.||...... +.......+.+...+
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence 67999999997410 0111211111 112345677777655332 111234678999999
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCChH
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLPL 1171 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlPL 1171 (1866)
.++-.+++......... ..++. .++..+.|.|-
T Consensus 188 ~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 188 EKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred HHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 99988888777643321 12233 34556666653
No 290
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.0079 Score=70.57 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc-cccccceEEEEEecC-CCCHHHHHHHHHHHhccCCCCccC
Q 000202 986 NVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE-VKVMFHVIIWVTVSR-YWNTRKIQKQVLRQLSLHCKDRET 1063 (1866)
Q Consensus 986 ~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~ 1063 (1866)
-++.+.+.+...+.+..-++|+.|+||||+|+.+.+... ..........+..+. ...+..+ +++.+.+....
T Consensus 5 ~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p----- 78 (305)
T 2gno_A 5 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP----- 78 (305)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC-----
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc-----
Confidence 345555666555566888999999999999999965210 111122234444332 2232222 23333332111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCC--ccchhhhcCCCCCCCCCcEEEEccCCh-hhhccCCCCcEEEecCCChHHHHH
Q 000202 1064 DAQVAEKLWQVLNGEKFLLLLDDVWE--QIDLEAVGIPVPGSENGSKIFMASREL-DVCRNMDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L~~~~a~~ 1140 (1866)
..+++-++|+|+++. ....+.+...+......+.+|++|.+. .+....... +++++++++++..+
T Consensus 79 -----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~ 146 (305)
T 2gno_A 79 -----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRD 146 (305)
T ss_dssp -----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHH
T ss_pred -----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHH
Confidence 134567889999975 334555544443333567777766543 343333334 89999999999999
Q ss_pred HHHHHh
Q 000202 1141 LFCKEV 1146 (1866)
Q Consensus 1141 Lf~~~~ 1146 (1866)
.+.+.+
T Consensus 147 ~L~~~~ 152 (305)
T 2gno_A 147 LVKEKI 152 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887766
No 291
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.09 E-value=0.0082 Score=57.82 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=48.0
Q ss_pred CCccEEEccccccccCchHHHHHHHHhhCCCceEeeCCCCCCCCCchhHHHHhhhcceEEEEeccCcccchhhHHHHHHH
Q 000202 14 KMYDVFLSFRGEDTRDNFTSHLYSALCQNNVETFIDNDLKRGDEIPESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 93 (1866)
Q Consensus 14 ~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 93 (1866)
.+|.+||||+.+|. ...|...|.+.|+... | ..|+.|.++||+.++....|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 57999999999993 3333344445566433 2 568899999999999999999999998766
Q ss_pred HH
Q 000202 94 LE 95 (1866)
Q Consensus 94 ~~ 95 (1866)
.+
T Consensus 64 ~~ 65 (111)
T 1eiw_A 64 RK 65 (111)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 292
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.08 E-value=0.023 Score=65.72 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=67.3
Q ss_pred EEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH-hhcC
Q 000202 212 LGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR-LARK 290 (1866)
Q Consensus 212 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~-L~~k 290 (1866)
++|+|.+|+||||||+.++...... .+.+. ..... ........+. + ..+.+. ....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~-~~~~~~~~~~-i-----------------~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELL-NMYVGESERA-V-----------------RQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTC-SSTTHHHHHH-H-----------------HHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHH-hhhhhHHHHH-H-----------------HHHHHHHHhcC
Confidence 9999999999999999999865432 22222 11110 0000000000 0 111111 1345
Q ss_pred cEEEEEecCCCH-------------HHHHHHhhccCCCC--CCCEEEEEccccchhccC-----ccceeeecCCCCHHHH
Q 000202 291 KVLIVFDDVNHP-------------RQIELLIGRLDRFA--SGSQVIITTRDKQVLTNC-----EVDHIYQMKELVHADA 350 (1866)
Q Consensus 291 ~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 350 (1866)
+.++++|+++.. .....+...+..+. ...-++.+|...+++... ..+..+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 688999998641 11222333222211 233455677766654321 2356778999999988
Q ss_pred HHHHHhhc
Q 000202 351 HKLFTQCA 358 (1866)
Q Consensus 351 ~~Lf~~~a 358 (1866)
.++|..+.
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887665
No 293
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.06 E-value=0.0038 Score=68.81 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=50.7
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccCC
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVCD 789 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~~ 789 (1866)
..+-|+|+.|.||||||+.+++.-. ......++++.+ +++..+...+.............+.-+|||||++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~ 126 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGA 126 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 5677999999999999999996543 223344565433 34433332221100000011112233899999976
Q ss_pred CChHHHHH--HH-HhcccCCCCCcEEEEecCC
Q 000202 790 IDDEELHN--FR-LLISNMRDSGSCFLVTTHS 818 (1866)
Q Consensus 790 ~~~~~w~~--~~-~~l~~~~~~gs~iivttr~ 818 (1866)
.....|.. +. ..+......+.++|+||..
T Consensus 127 ~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 127 EAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp C---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 43223221 22 1222111235677887764
No 294
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.05 E-value=0.012 Score=70.50 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=39.5
Q ss_pred CCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 185 SKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 185 ~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...++|++..++.+...+..+. -+.++|.+|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3579999999988888776532 58899999999999999999876443
No 295
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.01 E-value=0.021 Score=76.46 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=41.9
Q ss_pred cCCCceeehhhHHHHHHhhhc-----------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 184 ESKDLIGVEWRIKEIESLLRT-----------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+++|.+..+++|.+++.. +-.....|.|+|.+|+||||||++++......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 345799999999999888753 22334579999999999999999999876443
No 296
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.085 Score=63.30 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=81.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|-++|++|.|||.||+++++... .. .+.+..+.-.+ .. .......+.+.+...-...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~s--------------k~-vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD--CK---FIRVSGAELVQ--------------KY-IGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT--CE---EEEEEGGGGSC--------------SS-TTHHHHHHHHHHHHHHHTC
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC--CC---ceEEEhHHhhc--------------cc-cchHHHHHHHHHHHHHHhC
Confidence 34578999999999999999965322 11 23344332111 00 0111111222222233457
Q ss_pred cEEEEEeCCCCcc----------c------hhhhcCCCCC--CCCCcEEEEccCChhhh-----ccCCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI----------D------LEAVGIPVPG--SENGSKIFMASRELDVC-----RNMDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~----------~------~~~l~~~l~~--~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~ 1135 (1866)
.++|++|+++... + ...+...+.+ ...+-.||.||...+.. +....+..+.+..-+.
T Consensus 242 P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH
T ss_pred CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH
Confidence 8999999997420 0 1112111111 22344566677765542 2224567899999999
Q ss_pred HHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
++-.++|..+....... -++. .|++.+.|.-
T Consensus 322 ~~R~~Il~~~~~~~~l~~dvdl~----~lA~~t~G~S 354 (405)
T 4b4t_J 322 AARAEILRIHSRKMNLTRGINLR----KVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHTTSBCCSSCCHH----HHHHHCCSCC
T ss_pred HHHHHHHHHHhcCCCCCccCCHH----HHHHHCCCCC
Confidence 99999998777554322 2343 4667777754
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.96 E-value=0.026 Score=65.64 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=36.3
Q ss_pred ccCCCceeehhhHHHHHHhhhcC---------C-CCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 183 SESKDLIGVEWRIKEIESLLRTG---------S-AGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~---------~-~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...++++|.+...+++..+...- + .-.+-+.|+|.+|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34457888887777766544310 0 0112389999999999999999998764
No 298
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.68 E-value=0.03 Score=69.53 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=90.6
Q ss_pred ccccchhhHHHHHHHHHhccC---------CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHH
Q 000202 977 VTAVNYTQRNVRKIFRYVNDV---------TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQ 1047 (1866)
Q Consensus 977 ~~~~~~~~~~~~~i~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 1047 (1866)
+.|...-.+++.+++..+... ..+-|.++|++|+|||+||+.+.+.. ... .+.++.+.-...
T Consensus 18 i~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~---- 88 (476)
T 2ce7_A 18 VGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL---- 88 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC----
T ss_pred hCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH----
Confidence 333333344555555555321 12348899999999999999996532 111 223333321110
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCc----------------cchhhhcCCCC--CCCCCcEE
Q 000202 1048 KQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQ----------------IDLEAVGIPVP--GSENGSKI 1109 (1866)
Q Consensus 1048 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~I 1109 (1866)
. ...........+.....+..++|+||++... .....+...+. ....+-.|
T Consensus 89 ----------~-~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 89 ----------F-VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred ----------H-hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 0 0001122223344445567899999999541 01122221111 11235567
Q ss_pred EEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1110 FMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1110 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
|.||...+.... ...+..+.+...+.++-.+++..++......++.. ...|++.+.|..
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 777776654221 12345788898888888888877765432222110 233677788876
No 299
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.67 E-value=0.028 Score=68.53 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+.++|.+|+|||++|+++++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998763
No 300
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.60 E-value=0.0037 Score=64.72 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhcC
Q 000202 982 YTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 982 ~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
|....+.++.+.+ .... .-|.|+|..|+|||++|+.+++.
T Consensus 5 G~s~~~~~~~~~~~~~a~~~-~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 5 GRSEWINQYRRRLQQLSETD-IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSSHHHHHHHHHHHHHTTCC-SCEEEESSTTSSHHHHHHHHHHS
T ss_pred eCCHHHHHHHHHHHHHhCCC-CCEEEECCCCCCHHHHHHHHHHh
Confidence 4444455555444 2233 34679999999999999999764
No 301
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.55 E-value=0.02 Score=71.77 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=75.5
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCc---cccccc-ce-EEEEEecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYP---EVKVMF-HV-IIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~---~~~~~F-~~-~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++|++++++.++..+......-+.++|.+|+|||++|+.+++.- .+.... +. .+.++.+ ..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~ 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TK 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------cc
Confidence 467888999999998866555667899999999999999995431 111111 11 1122222 00
Q ss_pred hccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCccchhhhcCCCCCCCCCcEEEEccCChh------hhcc-CCCCc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQIDLEAVGIPVPGSENGSKIFMASRELD------VCRN-MDVNM 1126 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~------v~~~-~~~~~ 1126 (1866)
..+. .......+. ...-.....+|++| -..+....+...+.. ..-++|.+|.... +-.. ..-..
T Consensus 248 ~~g~--~e~~~~~~~---~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 248 YRGE--FEDRLKKVM---DEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp -------CTTHHHHH---HHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred ccch--HHHHHHHHH---HHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 0000 011112222 22223567889999 222222334443332 1245555554433 1000 00113
Q ss_pred EEEecCCChHHHHHHHHHHhc
Q 000202 1127 VVKLETLSMKDAWELFCKEVG 1147 (1866)
Q Consensus 1127 ~~~l~~L~~~~a~~Lf~~~~~ 1147 (1866)
++.+...+.++..+++...+.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTT
T ss_pred cceeCCCCHHHHHHHHHHHHH
Confidence 689999999999999986553
No 302
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.067 Score=65.31 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=80.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|.|||+||+++++.... . .+.+..+.-.+ .. .......+.......-...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~--~---~~~v~~s~l~s--------------k~-~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA--N---FIFSPASGIVD--------------KY-IGESARIIREMFAYAKEHE 274 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGTCC--------------SS-SSHHHHHHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehhhhcc--------------cc-chHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999653221 1 22334332111 00 0111111122222233467
Q ss_pred cEEEEEeCCCCcc--------c--------hhhhcCCCC--CCCCCcEEEEccCChhhhcc-----CCCCcEEEecCCCh
Q 000202 1079 KFLLLLDDVWEQI--------D--------LEAVGIPVP--GSENGSKIFMASRELDVCRN-----MDVNMVVKLETLSM 1135 (1866)
Q Consensus 1079 r~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~ 1135 (1866)
.++|++|+++... . ...+...+. ....+..||.||...+.... ...+..+.+...+.
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCH
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCH
Confidence 8999999997410 0 111221111 12234567778876654322 12356788888888
Q ss_pred HHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1136 KDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1136 ~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
++-.++|..+...... ..++. .+++.+.|.-
T Consensus 355 ~~R~~Il~~~~~~~~~~~d~dl~----~lA~~t~G~s 387 (437)
T 4b4t_L 355 AGRLEIFKIHTAKVKKTGEFDFE----AAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHHTSCBCSCCCHH----HHHHTCCSCC
T ss_pred HHHHHHHHHHhcCCCCCcccCHH----HHHHhCCCCC
Confidence 8888898877654322 22343 4666777754
No 303
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.52 E-value=0.099 Score=66.70 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=36.4
Q ss_pred CceeehhhHHHHHHhhhc----CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 187 DLIGVEWRIKEIESLLRT----GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~----~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+|.+...+.+.+.+.. .......+.++|.+|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 478887777666554331 111345799999999999999999998765443
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.46 E-value=0.023 Score=77.22 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=36.0
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.++|+++++..++..+.....+.+.++|.+|+||||+|+.+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4678889999999988665555678999999999999999965
No 305
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.15 Score=62.13 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=81.0
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
..+-|.++|++|.|||.||+++++... .. .+.+..+.-. ... .......+...+...-..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~L~--------------sk~-vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSELV--------------QKY-VGEGARMVRELFEMARTK 301 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGC--------------CCS-SSHHHHHHHHHHHHHHHT
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHHhh--------------ccc-CCHHHHHHHHHHHHHHhc
Confidence 345688999999999999999965322 11 2233333211 000 011111122222233346
Q ss_pred CcEEEEEeCCCCcc--------c--------hhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI--------D--------LEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++... . ...+...+. ....+-.||.||...+.. +....+..+.+...+
T Consensus 302 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd 381 (467)
T 4b4t_H 302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381 (467)
T ss_dssp CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCC
T ss_pred CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcC
Confidence 78999999997420 0 011111111 112334556677655442 222356788999999
Q ss_pred hHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQS--PDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~~--~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+....... -++ ..|++.|.|.-
T Consensus 382 ~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 382 LEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp HHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 999999998777554322 233 34667777753
No 306
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.092 Score=64.04 Aligned_cols=147 Identities=11% Similarity=0.143 Sum_probs=77.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHH-HHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLW-QVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~L~~ 1077 (1866)
.+-|-++|++|.|||.||+++++... . ..+.++.+.-. ... ....+.....+. ..-..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~--~---~f~~v~~s~l~--------------~~~--vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN--A---TFLKLAAPQLV--------------QMY--IGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT--C---EEEEEEGGGGC--------------SSC--SSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC--C---CEEEEehhhhh--------------hcc--cchHHHHHHHHHHHHHhc
Confidence 45688999999999999999965321 1 12233333210 000 111111122222 22234
Q ss_pred CcEEEEEeCCCCc-------c-----c----hhhhcCCCCC--CCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQ-------I-----D----LEAVGIPVPG--SENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~-------~-----~----~~~l~~~l~~--~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++.. . . ...+...+.+ ...+-.||.||...+.... ...+..+.+...+
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd 353 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence 6799999998631 0 0 1112222221 1234456667776654322 1335678898889
Q ss_pred hHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+..... ..-++. .|++.+.|.-
T Consensus 354 ~~~R~~Il~~~~~~~~~~~dvdl~----~lA~~t~G~s 387 (434)
T 4b4t_M 354 EDSRAQILQIHSRKMTTDDDINWQ----ELARSTDEFN 387 (434)
T ss_dssp HHHHHHHHHHHHHHSCBCSCCCHH----HHHHHCSSCC
T ss_pred HHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 8888888876654322 222333 4666777753
No 307
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.23 E-value=0.041 Score=56.58 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=61.7
Q ss_pred ccccchhhHHHHHHHhhhhhhccCCceEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHH
Q 000202 683 DLAVSERDLVHFINKVNYELLRDVNMVRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAV 762 (1866)
Q Consensus 683 ~~~g~~~d~~~li~~l~~~~~~~~~~l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~ 762 (1866)
.++|......++...+..-.. ....| =|+|..|.|||++|+.+++... -++.++..--..+....++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~---~~~~v-ll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK---RTSPV-FLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMPMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT---CSSCE-EEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC---CCCcE-EEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhhhhHHH
Confidence 356776666666665543221 12344 4899999999999999987543 23333322111111111111
Q ss_pred HHHHHHhhhhhhhccCeEEEEEEccCCCChHHHHHHHHhcccCCCCCcEEEEecC
Q 000202 763 QFSEIRRAENMADLSERLLVVLDDVCDIDDEELHNFRLLISNMRDSGSCFLVTTH 817 (1866)
Q Consensus 763 ~~~~~~~~~~~~~~~~r~LlVlddv~~~~~~~w~~~~~~l~~~~~~gs~iivttr 817 (1866)
. .+.-.++||++-.........+...+......+.+||.||.
T Consensus 73 ~-------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 73 K-------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp H-------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred h-------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 1 12236789999887766666676666542234567777775
No 308
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.14 E-value=0.13 Score=58.70 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=75.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCc
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEK 1079 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 1079 (1866)
+-|.|+|..|+||||||+.+++.. ... .+.++.+.-.+ .. ...........+........
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~--------------~~-~~~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE--------------MF-VGVGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT--------------SC-CCCCHHHHHHHHHHHHTTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH--------------Hh-hhhhHHHHHHHHHHHHHcCC
Confidence 358899999999999999996532 111 23332221100 00 01112222333333445567
Q ss_pred EEEEEeCCCCcc----------------chhhhcCCCC--CCCCCcEEEEccCChhhh-cc----CCCCcEEEecCCChH
Q 000202 1080 FLLLLDDVWEQI----------------DLEAVGIPVP--GSENGSKIFMASRELDVC-RN----MDVNMVVKLETLSMK 1136 (1866)
Q Consensus 1080 ~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~gs~IivTTR~~~v~-~~----~~~~~~~~l~~L~~~ 1136 (1866)
.++++|++.... ....+...+. ....+..||.||...... .. ...+..+.+...+.+
T Consensus 106 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHH
Confidence 899999984210 0111111111 112345666677654421 11 123457788888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHcCC-ChH
Q 000202 1137 DAWELFCKEVGGIIQSPDIHLYARAIVKGCCG-LPL 1171 (1866)
Q Consensus 1137 ~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~G-lPL 1171 (1866)
+-.+++..........++. ....++..+.| .+-
T Consensus 186 ~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGA 219 (257)
T ss_dssp HHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHH
T ss_pred HHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHH
Confidence 8888887765433211111 12335666677 443
No 309
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.18 Score=60.71 Aligned_cols=147 Identities=11% Similarity=0.147 Sum_probs=78.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHH-HHHhCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKL-WQVLNG 1077 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~~ 1077 (1866)
.+=|-++|++|.|||.||+++++... .. .+.++.+.- ... .....+.....+ ...-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~--~~---fi~v~~s~l--------------~sk--~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS--AT---FLRIVGSEL--------------IQK--YLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT--CE---EEEEESGGG--------------CCS--SSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC--CC---EEEEEHHHh--------------hhc--cCchHHHHHHHHHHHHHhc
Confidence 45688999999999999999965322 11 223332221 000 011111222222 222245
Q ss_pred CcEEEEEeCCCCcc------------c----hhhhcCCCC--CCCCCcEEEEccCChhhhcc-----CCCCcEEEecCCC
Q 000202 1078 EKFLLLLDDVWEQI------------D----LEAVGIPVP--GSENGSKIFMASRELDVCRN-----MDVNMVVKLETLS 1134 (1866)
Q Consensus 1078 kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~ 1134 (1866)
..++|++|+++... . ...+...+. ....+-.||.||...+.... ...+..+.+..-+
T Consensus 275 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd 354 (437)
T 4b4t_I 275 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354 (437)
T ss_dssp CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCC
T ss_pred CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcC
Confidence 68999999987310 0 111111111 12234456677776655322 1234578888888
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-.++|..+...... ..++. .|++.+.|.-
T Consensus 355 ~~~R~~Il~~~l~~~~l~~dvdl~----~LA~~T~GfS 388 (437)
T 4b4t_I 355 LSTKKKILGIHTSKMNLSEDVNLE----TLVTTKDDLS 388 (437)
T ss_dssp HHHHHHHHHHHHTTSCBCSCCCHH----HHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCCC
Confidence 88888999877754432 22343 4566676653
No 310
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.23 Score=60.47 Aligned_cols=148 Identities=17% Similarity=0.225 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
.+-|.++|++|+|||+||+++++... .. .+.+..+.-.+ .. .......+...+...-...
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~--~~---~~~v~~~~l~~--------------~~-~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK--AA---FIRVNGSEFVH--------------KY-LGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT--CE---EEEEEGGGTCC--------------SS-CSHHHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC--CC---eEEEecchhhc--------------cc-cchhHHHHHHHHHHHHHcC
Confidence 45588999999999999999965322 11 22334332111 00 0111111222222233456
Q ss_pred cEEEEEeCCCCc--------c----c----hhhhcCCCC--CCCCCcEEEEccCChhhh-----ccCCCCcEEEecCCC-
Q 000202 1079 KFLLLLDDVWEQ--------I----D----LEAVGIPVP--GSENGSKIFMASRELDVC-----RNMDVNMVVKLETLS- 1134 (1866)
Q Consensus 1079 r~LlVlDdv~~~--------~----~----~~~l~~~l~--~~~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~- 1134 (1866)
.++|++|+++.. . . ...+...+. ....|-.||.||...+.. +....+..+.+..+.
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCC
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCC
Confidence 899999998621 0 0 111111111 122344566777765432 222334567786664
Q ss_pred hHHHHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCCh
Q 000202 1135 MKDAWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1135 ~~~a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~GlP 1170 (1866)
.++-..+|..+...... .-++. .+++.+.|.-
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~dl~----~lA~~t~G~s 379 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEADLD----SLIIRNDSLS 379 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTCCHH----HHHHHTTTCC
T ss_pred HHHHHHHHHHHhcCCCCCcccCHH----HHHHHCCCCC
Confidence 45555666665543322 22343 4566677653
No 311
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.99 E-value=0.15 Score=63.82 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=79.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
...-|.|+|.+|+|||++|+++.+.. .. ..+.++.+ . +. .... ..........+.....+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~--~~---~fv~vn~~------~----l~----~~~~-g~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET--GA---FFFLINGP------E----IM----SKLA-GESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC--SS---EEEEEEHH------H----HH----TSCT-THHHHHHHHHHHHHHHT
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh--CC---CEEEEEch------H----hh----hhhc-chhHHHHHHHHHHHHhc
Confidence 34568899999999999999995432 21 12233321 1 11 1000 11112223334444456
Q ss_pred CcEEEEEeCCCCc--------c-----chhhhcCCCC--CCCCCcEEEEccCChhh-----hccCCCCcEEEecCCChHH
Q 000202 1078 EKFLLLLDDVWEQ--------I-----DLEAVGIPVP--GSENGSKIFMASRELDV-----CRNMDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1078 kr~LlVlDdv~~~--------~-----~~~~l~~~l~--~~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~~ 1137 (1866)
+..+|+||+++.. . ....+...+. ....+-+||.||..... .+.......+.+...+.++
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 7899999999421 0 0111211111 11234456666665432 2212334578999999999
Q ss_pred HHHHHHHHhcCCCC--CchHHHHHHHHHHHcCCC
Q 000202 1138 AWELFCKEVGGIIQ--SPDIHLYARAIVKGCCGL 1169 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~--~~~~~~~~~~I~~~c~Gl 1169 (1866)
-.+++..++..... ..++ ..+++.+.|.
T Consensus 377 R~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred HHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 99999888754322 2223 3466667775
No 312
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.87 E-value=0.011 Score=68.31 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=44.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEe--cCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTV--SRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
+++.|+|++|+||||||.++... .-..++|++. .+..+. ...+.+.....+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHhh
Confidence 46789999999999999999653 1123456666 332111 003445555666666666
Q ss_pred CcEEEEEeCCCC
Q 000202 1078 EKFLLLLDDVWE 1089 (1866)
Q Consensus 1078 kr~LlVlDdv~~ 1089 (1866)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 66 999999854
No 313
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.84 E-value=0.11 Score=69.91 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=84.6
Q ss_pred ccchhhHHHHHHHHHhccCCccEEEEEcCCCchHHHHHHHHhcCcc---ccc-ccceEEEE-EecCCCCHHHHHHHHHHH
Q 000202 979 AVNYTQRNVRKIFRYVNDVTASKIGVYGVGGIGKTAALKALISYPE---VKV-MFHVIIWV-TVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 979 ~~~~~~~~~~~i~~~l~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~---~~~-~F~~~~wv-~vs~~~~~~~~~~~i~~~ 1053 (1866)
.++|++++++.+++.+......-+.++|.+|+||||+|+.+.+.-. +.. .....++. ..+. +
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-------
Confidence 4678889999999998766666788999999999999999964211 111 12333321 1111 0
Q ss_pred hccCCCCccCHHHHHHHHHHHh-CCCcEEEEEeCCCCc----------cc-hhhhcCCCCCCCCCcEEEEccCChhhhcc
Q 000202 1054 LSLHCKDRETDAQVAEKLWQVL-NGEKFLLLLDDVWEQ----------ID-LEAVGIPVPGSENGSKIFMASRELDVCRN 1121 (1866)
Q Consensus 1054 l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~----------~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 1121 (1866)
+. ........+.....+.+.+ ..+..+|++|++... .+ ...+...+.. .+-.+|.+|........
T Consensus 254 ~~-~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 LA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp -C-CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCC
T ss_pred hc-cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhh
Confidence 00 0111222333333333444 345789999999743 11 2223333322 23456666654332111
Q ss_pred CC-------CCcEEEecCCChHHHHHHHHHHh
Q 000202 1122 MD-------VNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1122 ~~-------~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.. -...+.+...+.++..+++...+
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 10 11368899999999888886543
No 314
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.82 E-value=0.29 Score=58.31 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=35.2
Q ss_pred cEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1126 MVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1126 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
..+.+++.+.++-.+++.+.+......- ..+.+..|++.+.|.|-.+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~~-~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVEI-EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHTSTTCHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHhcCCChHHHHHH
Confidence 4688999999999999987663221111 1345778999999999655433
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.64 E-value=0.032 Score=64.51 Aligned_cols=34 Identities=21% Similarity=0.079 Sum_probs=25.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
.+++.|+|++|+||||||.+++.. .-..+.|+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 456789999999999999999886 2223456654
No 316
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.64 E-value=0.017 Score=59.97 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=50.6
Q ss_pred eEEEEEEcCCchhHHHHHHHHhcCccccccccceEEEEECCCCcHHHHHHHHHHHHHHHHhhhhhhhccCeEEEEEEccC
Q 000202 709 VRILPISGMSGTGRTVLAQRVYSNKKVKSHFPFRFWFSVSKNLDLSTVLNAIAVQFSEIRRAENMADLSERLLVVLDDVC 788 (1866)
Q Consensus 709 l~Vi~IvG~gg~Gkttla~~v~~d~~v~~~F~~~~wv~v~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~r~LlVlddv~ 788 (1866)
-.++.|+|+.|.|||||++.+.+..... .+ ..+++...+-.+. ....+.-++||||+-
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~--------------------~~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT--------------------DAAFEAEYLAVDQVE 93 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC--------------------GGGGGCSEEEEESTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH--------------------HHHhCCCEEEEeCcc
Confidence 3578899999999999999998654321 11 2455544332221 011234588899997
Q ss_pred CCChHHHHHHHHhcccCCCCC-cEEEEecC
Q 000202 789 DIDDEELHNFRLLISNMRDSG-SCFLVTTH 817 (1866)
Q Consensus 789 ~~~~~~w~~~~~~l~~~~~~g-s~iivttr 817 (1866)
..+...-+.+...+.....+| ++||+||+
T Consensus 94 ~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 94 KLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred ccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 655433334444433222233 34888876
No 317
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.63 E-value=0.017 Score=63.92 Aligned_cols=109 Identities=17% Similarity=0.013 Sum_probs=58.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.++.|+|..|+||||++..++++...+-..+.++....... . ..++.+.++......... ....+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~------~~~i~srlG~~~~~~~~~--~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S------IRNIQSRTGTSLPSVEVE--SAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G------CSSCCCCCCCSSCCEEES--STHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H------HHHHHHhcCCCccccccC--CHHHHHHHHH
Confidence 458899999999999999999998766544444442111100 0 011122221111100111 1122333332
Q ss_pred ----cC-cEEEEEecCCC--HHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 ----RK-KVLIVFDDVNH--PRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ----~k-~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
+. .-+||+|.+.. .++++.+....+ .|-.||+|.++.+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 23 44999999863 445554433221 2788999999654
No 318
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.54 E-value=0.014 Score=67.56 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 000202 1001 KIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
-|.++|.+|+|||+||+.+++
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 377999999999999999965
No 319
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.53 E-value=0.07 Score=62.74 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.7
Q ss_pred hHHHHHHhhhcCCC-CcEEEEEEecCCCchhHHHHHHHHhhh-ccccceEEE
Q 000202 194 RIKEIESLLRTGSA-GVYKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFA 243 (1866)
Q Consensus 194 ~l~~l~~~L~~~~~-~~~~i~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 243 (1866)
.++.+.+++..... ....+.|+|.+|+|||+||.++++... ..-..+.|+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 34445556654222 246789999999999999999999766 443334444
No 320
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.51 E-value=0.12 Score=57.50 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhc-----------cCC-CCccCHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLS-----------LHC-KDRETDAQ 1066 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----------~~~-~~~~~~~~ 1066 (1866)
-.++.|+|.+|+|||||+..+.. ..-..++|++....++...+.+ +.+.++ ... .......+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999965 1224677888766556555443 222221 111 11112233
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCC
Q 000202 1067 VAEKLWQVLNGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1067 ~~~~l~~~L~~kr~LlVlDdv~~ 1089 (1866)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44445555544567899998754
No 321
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.33 E-value=0.064 Score=60.25 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
-.+++|.|.+|+|||||++.++......-..+.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999999997554332334444
No 322
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.27 E-value=0.035 Score=65.66 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+.++|..|+||||+|+.+++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4789999999999999999955
No 323
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.25 E-value=0.047 Score=60.75 Aligned_cols=45 Identities=24% Similarity=0.107 Sum_probs=30.2
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.|..++..+-..-.+++|.|.+|+||||||..++. . .-..++|+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 34444432222345899999999999999999987 2 223455654
No 324
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.20 E-value=0.57 Score=61.62 Aligned_cols=172 Identities=10% Similarity=0.174 Sum_probs=91.8
Q ss_pred CcccccchhhHHHHHHHHH-hcc---------CCccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHH
Q 000202 975 SNVTAVNYTQRNVRKIFRY-VND---------VTASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTR 1044 (1866)
Q Consensus 975 ~~~~~~~~~~~~~~~i~~~-l~~---------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 1044 (1866)
.++.|...-.+++.+++.+ +.. ...+-|.++|++|+|||+||+++++.... + .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--E---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--e---EEEEEhHH-----
Confidence 4444555445566665554 311 22356889999999999999999654322 1 23333221
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEEEEEeCCCCcc--------c-----hhhhcCCCCC--CCCCcEE
Q 000202 1045 KIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFLLLLDDVWEQI--------D-----LEAVGIPVPG--SENGSKI 1109 (1866)
Q Consensus 1045 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~~--~~~gs~I 1109 (1866)
+. .. ........+...+....+...++|+||+++... + ...+...+.. ...+-.|
T Consensus 274 -----l~----sk-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IM----SK-LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HH----SS-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hh----cc-cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 11 111122223333344446678999999996410 0 1111111111 1123345
Q ss_pred EEccCChhhh-----ccCCCCcEEEecCCChHHHHHHHHHHhcCCC--CCchHHHHHHHHHHHcCCCh
Q 000202 1110 FMASRELDVC-----RNMDVNMVVKLETLSMKDAWELFCKEVGGII--QSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1110 ivTTR~~~v~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~--~~~~~~~~~~~I~~~c~GlP 1170 (1866)
|.||...+.. +....+..+++...+.++-.++|..+..... ...++ ..|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 5566554332 1113456889999999999999987665432 12233 34677787764
No 325
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.89 E-value=0.09 Score=56.34 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=58.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHh--ccccccCccc------h---
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLL--NDRNVKNFQN------I--- 278 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~~~~~~~~~------~--- 278 (1866)
..|.|++-.|.||||+|...+-+...+=-.+.++.-.... .......+.+.+.-.+. +..-...... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3577777788999999999998766554444554322210 01111233333200000 0000000000 0
Q ss_pred hHHHHHHHhhcCcE-EEEEecCC--------CHHHHHHHhhccCCCCCCCEEEEEcccc
Q 000202 279 SVNFQSKRLARKKV-LIVFDDVN--------HPRQIELLIGRLDRFASGSQVIITTRDK 328 (1866)
Q Consensus 279 ~~~~l~~~L~~k~~-LlVlDdv~--------~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 328 (1866)
.-...++.+...+| |||||++. +.+.+-.++.. -.....||||+|+.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 00344455555544 99999983 23333333332 24567899999987
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.66 E-value=0.081 Score=64.63 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceE
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSY 241 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 241 (1866)
.++|+|.+|+|||||+..+......++...+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 5899999999999999999987665554333
No 327
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.58 E-value=0.25 Score=56.20 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=73.0
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHh-CCCcE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVL-NGEKF 1080 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~ 1080 (1866)
+.|+|..|+||||||+.++.... ...+.+... .+... . ..........+.+.. .....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~~~~~--------~--~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVEM--------F--VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHHS--------C--TTHHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------HHHHH--------H--hhHHHHHHHHHHHHHHhcCCe
Confidence 88999999999999999965322 122233211 11100 0 000111122222332 34568
Q ss_pred EEEEeCCCCc------------cc----hhhhcCCCCCCC--CCcEEEEccCChhhhcc-----CCCCcEEEecCCChHH
Q 000202 1081 LLLLDDVWEQ------------ID----LEAVGIPVPGSE--NGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1081 LlVlDdv~~~------------~~----~~~l~~~l~~~~--~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~ 1137 (1866)
++++|++... .. ...+...+..+. ....++.||...++... ...+..+.+...+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 9999999421 01 112221222222 22344456666555221 2345678899889888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1138 AWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1138 a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
-.+++...+......++. ....+++.+.|.-
T Consensus 191 r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 888887665433211110 0223566666643
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.55 E-value=0.47 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|+|..|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998553
No 329
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.46 E-value=0.022 Score=61.48 Aligned_cols=25 Identities=24% Similarity=-0.098 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++.|+|..|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877654
No 330
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.19 E-value=0.32 Score=60.75 Aligned_cols=169 Identities=12% Similarity=0.202 Sum_probs=86.8
Q ss_pred cccccchhhHHHHHHHHHhccC---------CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHH
Q 000202 976 NVTAVNYTQRNVRKIFRYVNDV---------TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKI 1046 (1866)
Q Consensus 976 ~~~~~~~~~~~~~~i~~~l~~~---------~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 1046 (1866)
++.|...-..+++++...+... -.+-|.|+|.+|+||||||+.++.... ...+.++.+.-.+.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM--- 103 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS---
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh---
Confidence 3334333344556665555321 112388999999999999999965322 12233443221100
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHhCC----CcEEEEEeCCCCc------------cc----hhhhcCCCCCC--C
Q 000202 1047 QKQVLRQLSLHCKDRETDAQVAEKLWQVLNG----EKFLLLLDDVWEQ------------ID----LEAVGIPVPGS--E 1104 (1866)
Q Consensus 1047 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~------------~~----~~~l~~~l~~~--~ 1104 (1866)
. . ......++..++. ..+++++|++... .+ ...+...+..+ .
T Consensus 104 -----------~--~---g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 104 -----------F--V---GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp -----------C--T---THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred -----------h--h---hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 0 0 0111223333332 3489999999531 01 12222222221 2
Q ss_pred CCcEEEEccCChhhhcc-----CCCCcEEEecCCChHHHHHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1105 NGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1105 ~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+..|+.||+..++... ...+..+.+...+.++-.+++..++......++. ....|+..+.|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 34456667776655321 1335688999999988888887766432211111 1233566666654
No 331
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.18 E-value=0.41 Score=55.79 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred hHHHHHHhhhcC------CCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 194 RIKEIESLLRTG------SAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 194 ~l~~l~~~L~~~------~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-.++|.+.|... .....+|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 345555665432 1235799999999999999999999876554 3334443
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.14 E-value=0.14 Score=61.13 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=65.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccccceEE-EEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYF-ACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
.+|+|.|..|.|||||.+.+...+.....+.++ +.+..++..... . ..................+.+.|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~--------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K--------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c--------cceeeeeeccccCCHHHHHHHHhh
Confidence 489999999999999999998866544333332 222111100000 0 000000000001112257888889
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccchh
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQVL 331 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 331 (1866)
..+=+|++|.+.+.+.++.+.... ..|.-||+||-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999999888777655442 2366789999877654
No 333
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.94 E-value=0.17 Score=57.76 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=62.9
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+++|+|..|+|||||++.+...+...+.+.+++....-........ .+................+.+.|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--------~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--------SIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--------SEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--------eeeeHHHhCCCHHHHHHHHHHHHh
Confidence 458999999999999999999886654445555543211000000000 000000000000111355666677
Q ss_pred cCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccch
Q 000202 289 RKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQV 330 (1866)
Q Consensus 289 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 330 (1866)
..+=+|++|...|.+....+.... ..|.-|++||-+...
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 777788999998776655544332 246678888877654
No 334
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.92 E-value=0.046 Score=64.40 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=24.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
-..++|+|.+|+|||||+..+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34789999999999999999998665544
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.90 E-value=0.71 Score=54.37 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|..|+||||+++.++...... .+.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999999865543 3344443
No 336
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.87 E-value=0.24 Score=58.89 Aligned_cols=52 Identities=19% Similarity=0.066 Sum_probs=37.1
Q ss_pred hhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 193 WRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 193 ~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
.-..+|...|. .+-..-.++.|+|.+|+||||||.+++......-..++|+.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34456666676 33334578999999999999999999986654333456764
No 337
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.82 E-value=0.39 Score=55.48 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCCcEE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGEKFL 1081 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~L 1081 (1866)
|.|+|..|+||||||+.+..... ...+.+... .+... . . ......+...+...-.....+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~~~~~----~----~-~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------DFVEM----F----V-GVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------HHHHS----T----T-THHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------HHHHH----H----h-hHHHHHHHHHHHHHHhcCCcE
Confidence 88999999999999999965322 122333211 11110 0 0 000111111222222345689
Q ss_pred EEEeCCCCc------------cch----hhhcCCCCCCCC--CcEEEEccCChhhhc-----cCCCCcEEEecCCChHHH
Q 000202 1082 LLLDDVWEQ------------IDL----EAVGIPVPGSEN--GSKIFMASRELDVCR-----NMDVNMVVKLETLSMKDA 1138 (1866)
Q Consensus 1082 lVlDdv~~~------------~~~----~~l~~~l~~~~~--gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~~a 1138 (1866)
+|+|++... ..+ ..+...+..+.. ...++.||...++.. ....+..+.+...+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 999999421 111 122222222222 234445666555422 123456888999898888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHcCCCh
Q 000202 1139 WELFCKEVGGIIQSPDIHLYARAIVKGCCGLP 1170 (1866)
Q Consensus 1139 ~~Lf~~~~~~~~~~~~~~~~~~~I~~~c~GlP 1170 (1866)
.+++...+......++. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 88887766433211111 1223666676654
No 338
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.65 E-value=0.052 Score=58.10 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+++..+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 339
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.51 E-value=0.07 Score=62.66 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHh---ccCCccEEEEEcCCCchHHHHHHHHhc
Q 000202 982 YTQRNVRKIFRYV---NDVTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 982 ~~~~~~~~i~~~l---~~~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
|....+.++.+.+ ... ...|.|+|..|+|||++|+.+++
T Consensus 6 g~s~~~~~~~~~~~~~a~~-~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 6 GSSPAMQHLLNEIAMVAPS-DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CCSHHHHHHHHHHHHHCST-TSCEEEESCTTSCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhCC-CCcEEEECCCCchHHHHHHHHHH
Confidence 3334444444443 222 33477999999999999999965
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.50 E-value=1.2 Score=54.66 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=25.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++|.++|.+|+||||+|..++......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999877654
No 341
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.47 E-value=0.23 Score=60.49 Aligned_cols=52 Identities=31% Similarity=0.494 Sum_probs=34.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLS 264 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1866)
..++|.|.+|+|||+|+..+++.+..+. +.++|. ..++ ......++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 4689999999999999999998764433 344443 3443 22233555555544
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.42 E-value=0.38 Score=55.35 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=66.9
Q ss_pred EEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHH-hCCCcE
Q 000202 1002 IGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQV-LNGEKF 1080 (1866)
Q Consensus 1002 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~ 1080 (1866)
+.++|++|+||||||+.+...... ..+.+..+.-.+. ...........+.+. -....+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999653221 2334432221110 000001111122222 234578
Q ss_pred EEEEeCCCCccc-------------hhhhcCCCCCC--CCCcEEEEccCChhhhcc-----CCCCcEEEecCCChHHHHH
Q 000202 1081 LLLLDDVWEQID-------------LEAVGIPVPGS--ENGSKIFMASRELDVCRN-----MDVNMVVKLETLSMKDAWE 1140 (1866)
Q Consensus 1081 LlVlDdv~~~~~-------------~~~l~~~l~~~--~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~~a~~ 1140 (1866)
++++|++..... ...+...+..+ ....-++.+|...++... ...+..+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999974210 01111111111 123445567776665322 2346678888888888888
Q ss_pred HHHHHhc
Q 000202 1141 LFCKEVG 1147 (1866)
Q Consensus 1141 Lf~~~~~ 1147 (1866)
+|.....
T Consensus 186 il~~~~~ 192 (274)
T 2x8a_A 186 ILKTITK 192 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 8876653
No 343
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.24 E-value=0.26 Score=55.60 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
-.++.|+|.+|+|||||++.+........ .-..++|++....++...+. .+++.++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999854211111 12567888877655554443 3334443221 0111222
Q ss_pred H---HHHHHHHHhC-CCcEEEEEeCCCC
Q 000202 1066 Q---VAEKLWQVLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1066 ~---~~~~l~~~L~-~kr~LlVlDdv~~ 1089 (1866)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4667888998753
No 344
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.17 E-value=1.1 Score=54.66 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999876654
No 345
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.14 E-value=0.13 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=22.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 458899999999999999999876544
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.06 E-value=0.17 Score=55.32 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=32.1
Q ss_pred ehhhHHHHHHhhhcC-CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 191 VEWRIKEIESLLRTG-SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
|+..++++.+.+... .....+|+|.|..|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445566665555432 23467899999999999999999988653
No 347
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.06 E-value=0.093 Score=63.52 Aligned_cols=48 Identities=23% Similarity=0.215 Sum_probs=35.8
Q ss_pred CceeehhhHHHHHHhhh-------------cCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 187 DLIGVEWRIKEIESLLR-------------TGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~-------------~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.+..++.+...+. ........|.++|.+|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788888877777662 1111345689999999999999999998763
No 348
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.98 E-value=0.35 Score=53.51 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=23.0
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-.+++|+|..|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999988654
No 349
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=91.91 E-value=0.39 Score=49.54 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=64.9
Q ss_pred CccEEEcc--------------ccccccCchHHHHHHHHhhCCCceEeeC-CCC----C----CCCCchhHHHHhhhcce
Q 000202 15 MYDVFLSF--------------RGEDTRDNFTSHLYSALCQNNVETFIDN-DLK----R----GDEIPESLLGTIEASTI 71 (1866)
Q Consensus 15 ~~dvFis~--------------~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~~~~~i~~s~~ 71 (1866)
+=-+|++| ..+| .....-|.+.-....+-.|.|. +.. - -+.|.+.+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 4455 3456666666666666567775 442 2 24578889999999999
Q ss_pred EEEEeccCcccchhhHHHHHHHHHHHhhCCCEEEEEE
Q 000202 72 SIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVF 108 (1866)
Q Consensus 72 ~i~v~S~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 108 (1866)
+|+++|++...|.|-.+|+..++. +.+.+||-|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy 116 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIY 116 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEE
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEE
Confidence 999999999999999999988872 2455666665
No 350
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.87 E-value=0.12 Score=57.03 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|.+.+........+|+|.|..|.|||||++.+...+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334343332223467899999999999999999988654
No 351
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.78 E-value=0.08 Score=56.22 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988753
No 352
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.78 E-value=0.3 Score=57.56 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=36.3
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
|...-+..|..++ .+-..-.++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4444445555555 33234458999999999999999999876544334566654
No 353
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.70 E-value=0.27 Score=58.48 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=53.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
-+++.|+|.+|+||||||.++....... =..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4689999999999999999985432211 1346788877766654 4555554321 23345555555555
Q ss_pred HhC-CCcEEEEEeCCCC
Q 000202 1074 VLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~-~kr~LlVlDdv~~ 1089 (1866)
.++ .+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 553 4556889999864
No 354
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.62 E-value=0.3 Score=56.24 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHHhhh----cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc--cceEEEE
Q 000202 196 KEIESLLR----TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF--EGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~----~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 244 (1866)
.+|...|. .+-. ..++-|+|.+|+||||||.+++......+ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~-~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQ-SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBC-SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 44555665 3222 23689999999999999999988765543 3456665
No 355
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.60 E-value=0.27 Score=60.06 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=34.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc-ccceEEEEeeccccccccHHHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH-FEGSYFACNVRAAEETGRLDDLRKELLS 264 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1866)
..++|.|.+|+|||+|+..+.+.+..+ -+.++|. .+++ ......++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc--CcHHHHHHHHhhhc
Confidence 358999999999999999999976543 3455555 4444 23333555555543
No 356
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.49 E-value=0.34 Score=58.02 Aligned_cols=56 Identities=21% Similarity=0.094 Sum_probs=38.4
Q ss_pred eehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 190 GVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+...-+..|..+|. .+-..-.++.|.|.+|+||||||.+++......-..++|+..
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34444556666665 232334588999999999999999998866544345677763
No 357
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.47 E-value=0.51 Score=56.31 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc----ccceEEEEEecCCCCHHHHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV----MFHVIIWVTVSRYWNTRKIQKQVLRQLS 1055 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 1055 (1866)
-.++.|+|.+|+||||||.++........ .-..++|++....++...+.+ +++.++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45889999999999999998854322211 124678999888777766544 344443
No 358
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.45 E-value=0.091 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 359
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.37 E-value=0.091 Score=56.60 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+.|.|.|++|+||||+|+.++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
No 360
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.35 E-value=0.36 Score=57.81 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=53.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
.+++.|.|.+|+||||||.++....... =..++|++....++.. .++.++.+.. ...+.++....+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4578899999999999998885422211 2367899988776654 2444443211 22345666666666
Q ss_pred HhCC-CcEEEEEeCCCC
Q 000202 1074 VLNG-EKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~~-kr~LlVlDdv~~ 1089 (1866)
..+. .--+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 5543 446899999853
No 361
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.30 E-value=0.89 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCchHHHHHHHHhc
Q 000202 998 TASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
...++.++|.+|+||||||+.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999954
No 362
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.28 E-value=0.32 Score=57.66 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCccccc---------cc-----ceEEEEEecCCCCHHHHHHHHHHHhccCC------
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKV---------MF-----HVIIWVTVSRYWNTRKIQKQVLRQLSLHC------ 1058 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 1058 (1866)
-+++.|+|.+|+||||||.++........ .. ..++|++....++...+.+. ++.++.+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHcCCCHHHHhcC
Confidence 45899999999999999998854221111 11 46789998888777766643 44554321
Q ss_pred ---CCccCHH---HHHHHHHHHhC--CCcEEEEEeCCC
Q 000202 1059 ---KDRETDA---QVAEKLWQVLN--GEKFLLLLDDVW 1088 (1866)
Q Consensus 1059 ---~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 1088 (1866)
....+.+ ++...+.+.++ .+--+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 23344445554 345678888874
No 363
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.27 E-value=0.23 Score=49.91 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=7.4
Q ss_pred cCCCCCcEEEccCCCC
Q 000202 1466 GSLECLEVLDLRGTEI 1481 (1866)
Q Consensus 1466 ~~L~~L~~L~l~~~~i 1481 (1866)
..+.+|++|+|++|.+
T Consensus 52 ~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 52 DALPALRTAHLGANPW 67 (130)
T ss_dssp GGCTTCCEEECCSSCC
T ss_pred hhccccCEEEecCCCe
Confidence 3444444445544433
No 364
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.24 E-value=0.25 Score=49.61 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=33.0
Q ss_pred EEEccCCcCCc--ccChhHHhcCCCCcEEEccCCCCCCCCh-hhcCCCCCcEEecccccC
Q 000202 1401 TLFLQRNCRLR--VIPPSFFELMTSLKVLNLSKTRIKSLPE-TLVNLKCLQILILRDCDF 1457 (1866)
Q Consensus 1401 ~L~L~~~~~l~--~~p~~~~~~l~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 1457 (1866)
.++.+++ .+. .+|..+ -.+|++|+|++|.|+.+|. .+..+.+|++|+|++|..
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555544 444 666543 2457777777777777764 356677777777777653
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.17 E-value=0.18 Score=58.51 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 206 SAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 206 ~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345779999999999999999999886554
No 366
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.12 E-value=0.48 Score=54.58 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=53.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHH-HHHHHHH
Q 000202 1001 KIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQV-AEKLWQV 1074 (1866)
Q Consensus 1001 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 1074 (1866)
++-|+|.+|+|||||+.++.........=..++||+....++.. .+++++.+.. ...+.++. .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68899999999999998874322211112467899988877753 3666765432 12344444 3333222
Q ss_pred --h-CCCcEEEEEeCCCC
Q 000202 1075 --L-NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1075 --L-~~kr~LlVlDdv~~ 1089 (1866)
+ .++.-|||+|-|..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999999865
No 367
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.07 E-value=0.42 Score=56.59 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccc----cceEEEEEecCCCCHHHHHHHHHHHhccCC---------CCccCHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVM----FHVIIWVTVSRYWNTRKIQKQVLRQLSLHC---------KDRETDA 1065 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 1065 (1866)
..++.|+|.+|+||||||.++......... -..++|++....++...+.+ +++.++.+. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 458999999999999999988543221111 24678999888777766554 345554321 0111222
Q ss_pred ---HHHHHHHHHhC--CCcEEEEEeCCC
Q 000202 1066 ---QVAEKLWQVLN--GEKFLLLLDDVW 1088 (1866)
Q Consensus 1066 ---~~~~~l~~~L~--~kr~LlVlDdv~ 1088 (1866)
++...+...++ .+--+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344444443 455688888874
No 368
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.82 E-value=0.11 Score=55.25 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEEecCCCchhHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAV 229 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~ 229 (1866)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 369
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.81 E-value=0.79 Score=55.61 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcEEecccccCcccCC-ccccCCCCC
Q 000202 1394 PSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQILILRDCDFLFVLP-PEVGSLECL 1471 (1866)
Q Consensus 1394 ~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L 1471 (1866)
..+.+|..+.+..+ +..++...|..+..|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ +..++ ..+.++.+|
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred ccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 34445555554322 34444444455555555555443 33333 33445555555555432 12222 244555666
Q ss_pred cEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1472 EVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1472 ~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+.+.++.++.++. .+.++.+|+.+.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEc
Confidence 666666655655543 2555666666554
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.72 E-value=0.3 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998764
No 371
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.71 E-value=0.12 Score=60.87 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=32.6
Q ss_pred eehhhHHHHHHhhhc--CCCCcEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 190 GVEWRIKEIESLLRT--GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~--~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
+.+...+.+.+.+.. .......|.|+|++|+||||+|+.++......|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444444432 123456799999999999999999998765554
No 372
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.59 E-value=0.63 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998665
No 373
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=90.53 E-value=0.47 Score=56.72 Aligned_cols=151 Identities=9% Similarity=-0.068 Sum_probs=89.2
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh-ccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS-RHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
-.++..++|..|.||++.|.++.+.+. ..|+....+. .. .......+...+- ..-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~--------------------~~p 72 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQ--------------------AMS 72 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHH--------------------HHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhc--------------------CcC
Confidence 355789999999999999999998654 3343211111 11 1122222222211 011
Q ss_pred hhcCcEEEEEecCCC---HHHHHHHhhccCCCCCCCEEEEEccc-------cchhccC-ccceeeecCCCCHHHHHHHHH
Q 000202 287 LARKKVLIVFDDVNH---PRQIELLIGRLDRFASGSQVIITTRD-------KQVLTNC-EVDHIYQMKELVHADAHKLFT 355 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 355 (1866)
+-+++-++|+|+++. .+..+.+...+....+++.+|++|.. ..+.... ....+++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 345567888999864 45667777766665678888877643 1233221 234678899999998887776
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhCCCcc
Q 000202 356 QCAFRGDHLDAGYTELAHKALKYAQGVPL 384 (1866)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 384 (1866)
..+-... ..-..+.+..+++.++|.+.
T Consensus 153 ~~~~~~g--~~i~~~a~~~l~~~~~gdl~ 179 (343)
T 1jr3_D 153 ARAKQLN--LELDDAANQVLCYCYEGNLL 179 (343)
T ss_dssp HHHHHTT--CEECHHHHHHHHHSSTTCHH
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhchHHH
Confidence 6552111 11224556777787777543
No 374
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.48 E-value=0.39 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
...+|+++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998543
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.40 E-value=0.2 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+|.|.|++|+||||+|+.++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 376
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.39 E-value=0.31 Score=58.22 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=50.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
.+++.|.|.+|+||||||.++....... =..++|++....++.. .+..++.+.. ...+.++..+.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4589999999999999999885432211 1357899887776643 2344443211 12234444444444
Q ss_pred Hh-CCCcEEEEEeCCC
Q 000202 1074 VL-NGEKFLLLLDDVW 1088 (1866)
Q Consensus 1074 ~L-~~kr~LlVlDdv~ 1088 (1866)
.. ..+--+||+|.+.
T Consensus 136 l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 136 LARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHTCCSEEEEECGG
T ss_pred HHhccCCCEEEEcCHH
Confidence 33 2445589999874
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.36 E-value=0.13 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|+.|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 378
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.34 E-value=0.93 Score=54.94 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred ccccCcEEEccCCCCCCCC--CCCCCCcccEEEccCCcCCcccChhHHhcCCCCcEEEccCCCCCCCC-hhhcCCCCCcE
Q 000202 1373 EWTHAKMIFFMDNDLQTLP--GRPSCPNLLTLFLQRNCRLRVIPPSFFELMTSLKVLNLSKTRIKSLP-ETLVNLKCLQI 1449 (1866)
Q Consensus 1373 ~~~~l~~l~l~~~~l~~l~--~~~~~~~L~~L~L~~~~~l~~~p~~~~~~l~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~ 1449 (1866)
....++.+.+..+ +..+. .+..|..|+.+.+..+ +..++...|.++.+|+.+.+..+ +..++ ..+.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3445555555432 33222 3456777777777643 66667667777777777777543 55555 35667777777
Q ss_pred EecccccCcccCCccccCCCCCcEEEccCCCCCcCCh-hhcCCCccceecc
Q 000202 1450 LILRDCDFLFVLPPEVGSLECLEVLDLRGTEIKMLPK-EIGKLTSLRYLTV 1499 (1866)
Q Consensus 1450 L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 1499 (1866)
+.+.++.+...-+..|.++.+|+.+.|..+ ++.++. .+.++++|+.+.+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 777766543333456777777777777543 555543 3666666666654
No 379
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.29 E-value=0.14 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 380
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.22 E-value=0.12 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|+|++|+||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999988653
No 381
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.20 E-value=0.17 Score=57.13 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=28.7
Q ss_pred hhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 193 WRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 193 ~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+.++.+.+.........|+|.|++|+||||+|+.+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333322345689999999999999999998764
No 382
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.08 E-value=0.89 Score=54.15 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEE
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (1866)
..|..+|..+-..-.++.|+|.+|+||||||.+++..... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455556533344678999999999999999999885422 123466665
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.04 E-value=0.18 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|.|.|++|+||||+|+.+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 384
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.04 E-value=0.11 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
|.|.|.|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999987655444
No 385
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.03 E-value=0.38 Score=56.56 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=28.0
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
..++|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46789999999999999999999876654 3344443
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.02 E-value=0.12 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+.|.|.|++|+||||+|+.++.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998765
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.02 E-value=0.24 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|++|.||||||+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 388
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.99 E-value=1.8 Score=51.55 Aligned_cols=157 Identities=8% Similarity=-0.114 Sum_probs=91.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCC
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNG 1077 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 1077 (1866)
-.++..++|..|.||++.++.+..... ...|+....+.+....+.+++...+. ..-+.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------~~plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQ--------------------AMSLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHH--------------------HHHHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhc--------------------CcCCcc
Confidence 456888999999999999988844211 12343322223333334433332211 112456
Q ss_pred CcEEEEEeCCCC---ccchhhhcCCCCCCCCCcEEEEccCC-------hhhhccC-CCCcEEEecCCChHHHHHHHHHHh
Q 000202 1078 EKFLLLLDDVWE---QIDLEAVGIPVPGSENGSKIFMASRE-------LDVCRNM-DVNMVVKLETLSMKDAWELFCKEV 1146 (1866)
Q Consensus 1078 kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~a~~Lf~~~~ 1146 (1866)
.+-++|+|++.. ...++.+...+.....++.+|++|.. ..+.... ....+++..+++.++......+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999854 34566665544433456777766543 2233322 223688999999999888777665
Q ss_pred cCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000202 1147 GGIIQSPDIHLYARAIVKGCCGLPLLTIVT 1176 (1866)
Q Consensus 1147 ~~~~~~~~~~~~~~~I~~~c~GlPLAi~~~ 1176 (1866)
...... --.+.+..+++.++|...++...
T Consensus 156 ~~~g~~-i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE-LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE-ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC-CCHHHHHHHHHHhchHHHHHHHH
Confidence 322111 11345667888899988766543
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.95 E-value=0.37 Score=57.05 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=60.0
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhhcC
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLARK 290 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~~k 290 (1866)
.++|+|..|.|||||++.+...+.. -.+.+.+....+..... .. ..+ .-- ..........+.+.|..+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~-------~~i-~~~--~ggg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HK-------NYT-QLF--FGGNITSADCLKSCLRMR 240 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CS-------SEE-EEE--CBTTBCHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-ch-------hEE-EEE--eCCChhHHHHHHHHhhhC
Confidence 6999999999999999999876544 25566665433211100 00 000 000 001122235667778888
Q ss_pred cEEEEEecCCCHHHHHHHhhccCCCCCCC-EEEEEccccc
Q 000202 291 KVLIVFDDVNHPRQIELLIGRLDRFASGS-QVIITTRDKQ 329 (1866)
Q Consensus 291 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs-~IiiTTR~~~ 329 (1866)
+=+|++|.+.+.+.++.+... . .|. -+|+||....
T Consensus 241 p~ilildE~~~~e~~~~l~~~-~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYNVL-C---SGHKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCSTHHHHHHHHH-H---TTCCCEEEEEECSS
T ss_pred CCEEEEcCCChHHHHHHHHHH-h---cCCCEEEEEEcccH
Confidence 889999999886655544332 2 232 3677776554
No 390
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.89 E-value=0.16 Score=63.61 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=37.8
Q ss_pred CCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 186 KDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 186 ~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.+..++.+...+..+. -|.|+|.+|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHHHh
Confidence 468999999988887776543 588999999999999999998663
No 391
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.86 E-value=0.45 Score=56.10 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=42.8
Q ss_pred ceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHH
Q 000202 188 LIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSK 265 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1866)
..|...-+..|..++. +-..-.++.|.|.+|+||||||..++.....+=..++|+. .......+...++..
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 3444444555555553 2223458999999999999999999986654323445543 222334555555444
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.78 E-value=0.15 Score=61.24 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=34.7
Q ss_pred cCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 184 ESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 184 ~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+++|.+...+.+...+.... ..-|.|+|.+|+|||+||+++++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34568999886655443333211 22389999999999999999998654
No 393
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.78 E-value=0.18 Score=54.59 Aligned_cols=24 Identities=42% Similarity=0.319 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
..+|+|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 394
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.72 E-value=0.22 Score=53.53 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred ehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 191 VEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 191 r~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
...-+..+..++.. -+..+.+.|+|++|+||||+|.++++.+..
T Consensus 41 ~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33456667777764 223456899999999999999999987643
No 395
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.62 E-value=0.63 Score=56.04 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE-EeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHH
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA-CNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKR 286 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~ 286 (1866)
...+++|+|..|+|||||++.+...+.....+.+.+ ....+...... + .+................++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~-------~--~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK-------K--SIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCS-------S--SEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccC-------c--eEEEeeecCCCHHHHHHHHHHH
Confidence 345899999999999999999998665443444433 21111000000 0 0000000000001113567777
Q ss_pred hhcCcEEEEEecCCCHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 287 LARKKVLIVFDDVNHPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 287 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++..+=+|++|.+.+.+.+...+... ..|.-||.|+-...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77788899999998877665544432 34666777777654
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.57 E-value=0.25 Score=53.12 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|.|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987654
No 397
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.55 E-value=0.16 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998653
No 398
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.53 E-value=0.54 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHHHHHh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886543
No 399
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.52 E-value=0.22 Score=54.45 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+||||||+.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 400
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.52 E-value=0.18 Score=57.46 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=22.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
No 401
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.51 E-value=0.18 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988654
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.29 E-value=0.18 Score=55.25 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 403
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.27 E-value=0.11 Score=60.88 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.3
Q ss_pred EEEEEEcCCchhHHHHHHHHhcCc
Q 000202 710 RILPISGMSGTGRTVLAQRVYSNK 733 (1866)
Q Consensus 710 ~Vi~IvG~gg~Gkttla~~v~~d~ 733 (1866)
.-+-++|+.|+|||+||+.+.+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999988643
No 404
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.23 E-value=0.27 Score=51.56 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999876554
No 405
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.21 E-value=0.88 Score=55.45 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.1
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
...+|+++|.+|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999866554
No 406
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.20 E-value=0.18 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 407
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.20 E-value=0.63 Score=55.46 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCC-----CccCHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCK-----DRETDAQVAEKLWQ 1073 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 1073 (1866)
-+++.|+|.+|+||||||.++...... .=..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 468999999999999999988532221 11357888887766653 2444543211 12344555555554
Q ss_pred HhC-CCcEEEEEeCCCC
Q 000202 1074 VLN-GEKFLLLLDDVWE 1089 (1866)
Q Consensus 1074 ~L~-~kr~LlVlDdv~~ 1089 (1866)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 443 3456899999854
No 408
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.17 E-value=0.15 Score=55.78 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998875
No 409
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.16 E-value=0.078 Score=62.37 Aligned_cols=29 Identities=28% Similarity=0.142 Sum_probs=24.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
-+.++|+|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34689999999999999999999765433
No 410
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=89.11 E-value=0.29 Score=57.34 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
++.++|+|.|-|||||||.|..++.-+...=..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999998886655433344443
No 411
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.03 E-value=0.21 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.01 E-value=0.16 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|.|.|++|+||||+|+.++.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987653
No 413
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.88 E-value=1.5 Score=49.91 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|.|..|.|||||.+.++-..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998654
No 414
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.76 E-value=0.29 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+++|.|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 415
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.67 E-value=0.26 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 416
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.61 E-value=1.1 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|+|..|.|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998743
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.59 E-value=0.18 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|+.+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 418
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.57 E-value=0.22 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...|+|+|++|+||||+|+.++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999886
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.54 E-value=0.25 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.0
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|+|.|++|+||||+|+.++++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 420
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.54 E-value=0.21 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
+|+|.|++|+||||+|+.++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 421
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.53 E-value=0.35 Score=52.74 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcc---CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 984 QRNVRKIFRYVND---VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 984 ~~~~~~i~~~l~~---~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
++.++++.+.+.. ....+|+|.|..|+||||+++.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455556655532 3456899999999999999999843
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.53 E-value=0.22 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=22.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.+|+|.|++|+||||+|+.++.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 423
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.49 E-value=0.24 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..|+|.|++|+||||+|+.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 424
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.43 E-value=0.21 Score=53.02 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.6
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKAL 1019 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v 1019 (1866)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 425
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.42 E-value=0.24 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.7
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|.|++|+||||+|+.++.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 426
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.35 E-value=0.24 Score=52.26 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.|+|.|++|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 427
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.29 E-value=0.27 Score=53.66 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...+|+|.|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 428
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.29 E-value=0.36 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.+|+|.|++|+||||+|+.++.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999876543
No 429
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.25 E-value=0.62 Score=56.94 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=48.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCC-CHHHHHHHHHHHhc--------cCCCCccCHHH----
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYW-NTRKIQKQVLRQLS--------LHCKDRETDAQ---- 1066 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~---- 1066 (1866)
..++|+|..|+|||||+..+........ -+.++++.+.+.. ...++.+++...=. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 3689999999999999998854322221 2345566665543 34455554433200 00111111111
Q ss_pred HHHHHHHHh---CCCcEEEEEeCCCC
Q 000202 1067 VAEKLWQVL---NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1067 ~~~~l~~~L---~~kr~LlVlDdv~~ 1089 (1866)
..-.+.+++ +++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 011223332 68999999999954
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.17 E-value=0.25 Score=56.14 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|++|+||||+|+.+.....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999988654
No 431
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.16 E-value=0.24 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 458999999999999999999986643
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.08 E-value=0.35 Score=53.29 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=24.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|+|.|+.|+||||+|+.++.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999876543
No 433
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.07 E-value=0.72 Score=50.10 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=55.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-.+..++|..|.||||.|...+++...+-..++.+.-... ... -...+.+.+............ ..+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~----ge~~i~s~~g~~~~a~~~~~~--~~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRY----SEEDVVSHNGLKVKAVPVSAS--KDIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG--GGGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Ccc----hHHHHHhhcCCeeEEeecCCH--HHHHHHHh
Confidence 4688999999999999999999876655444444431111 100 011222322211110011111 11222223
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++--+|++|.+. +.++++.+....+ .|-.||+|.++-+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333499999985 3456644433211 3779999999664
No 434
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.06 E-value=0.28 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=22.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|+|.|.+|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988753
No 435
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.02 E-value=0.59 Score=56.04 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 195 IKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 195 l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..++...+........+|+|+|.+|+|||||+.+++......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444334467899999999999999999998765443
No 436
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.98 E-value=0.24 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...|.|.|++|+||||+|+.++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998865
No 437
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.89 E-value=0.26 Score=53.13 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcccc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRHFE 238 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (1866)
++++|.|..|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 47899999999999999999987654443
No 438
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.88 E-value=0.28 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 439
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.78 E-value=0.26 Score=53.94 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=19.9
Q ss_pred EEEEEecCCCchhHHHHHHHH
Q 000202 211 KLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
+|+|.|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 440
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.76 E-value=0.2 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|+|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45799999999999999999988653
No 441
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.68 E-value=0.27 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.2
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|++|+||||+|+.++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999998865
No 442
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.64 E-value=1.1 Score=54.18 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccc----cccceEEEEEecCCCCHHHHHHHHHHHhcc
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVK----VMFHVIIWVTVSRYWNTRKIQKQVLRQLSL 1056 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 1056 (1866)
-.++.|+|..|+|||||+..++-..... ..-..++|++....++...+. .+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCC
Confidence 3589999999999999999763211111 123467888877666655443 35555543
No 443
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.59 E-value=0.26 Score=52.17 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 000202 1000 SKIGVYGVGGIGKTAALKALI 1020 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~ 1020 (1866)
.+|.|.|+.|+||||+|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999984
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.53 E-value=0.27 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNK 232 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~ 232 (1866)
...+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999875
No 445
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.32 E-value=0.43 Score=52.41 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=26.5
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCchHHHHHHHHhc
Q 000202 986 NVRKIFRYVND--VTASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 986 ~~~~i~~~l~~--~~~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
-+++|.+.+.. ....+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555532 3456899999999999999999854
No 446
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.31 E-value=0.64 Score=56.25 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.++|.|..|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4789999999999999999986544
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.30 E-value=1.1 Score=59.90 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHhCCC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQLSLHCKDRETDAQVAEKLWQVLNGE 1078 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 1078 (1866)
...|.++|.+|+||||||+.+... ....| +.++.+. +.... .......+...+.......
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~--------------l~~~~-~g~~~~~l~~vf~~a~~~~ 297 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE--------------IMSKL-AGESESNLRKAFEEAEKNA 297 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH--------------HSSSS-TTHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH--------------hhhhh-hhhHHHHHHHHHHHHHhcC
Confidence 356899999999999999999543 22222 2333211 11100 0011112222233333456
Q ss_pred cEEEEEeCCCCcc----------------chhhhcCCCCCCCCCcEEEEccCChhhhc-cC----CCCcEEEecCCChHH
Q 000202 1079 KFLLLLDDVWEQI----------------DLEAVGIPVPGSENGSKIFMASRELDVCR-NM----DVNMVVKLETLSMKD 1137 (1866)
Q Consensus 1079 r~LlVlDdv~~~~----------------~~~~l~~~l~~~~~gs~IivTTR~~~v~~-~~----~~~~~~~l~~L~~~~ 1137 (1866)
..++++|++.... .+-.+...+.. ..+-.+|.||....-.. .. .....+.+...+.++
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccccccccccCCCCHHH
Confidence 7899999994210 01111111111 12345555655533211 11 223567788888888
Q ss_pred HHHHHHHHhcC
Q 000202 1138 AWELFCKEVGG 1148 (1866)
Q Consensus 1138 a~~Lf~~~~~~ 1148 (1866)
-.+++...+..
T Consensus 377 r~~il~~~~~~ 387 (806)
T 1ypw_A 377 RLEILQIHTKN 387 (806)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHhc
Confidence 88888766543
No 448
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.26 E-value=0.46 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 449
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.19 E-value=0.34 Score=54.69 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=27.5
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
-.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999998876544334556654
No 450
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.17 E-value=0.62 Score=56.77 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|.|-+|+|||+|+..+++...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999998654
No 451
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.17 E-value=0.99 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCc
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYP 1023 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~ 1023 (1866)
..++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999986433
No 452
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.17 E-value=0.42 Score=58.33 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=34.8
Q ss_pred CceeehhhHHHHHHhhhc------------CCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 187 DLIGVEWRIKEIESLLRT------------GSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 187 ~~vGr~~~l~~l~~~L~~------------~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|.+...+.+...+.. .....+-|.++|++|+||||+|++++......
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 567777766666554421 01123458899999999999999999876443
No 453
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.15 E-value=1 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=23.1
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
+++.|.|.+|+||||++..+.......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999998865543
No 454
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.14 E-value=0.29 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|+|..|+||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 455
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.13 E-value=0.28 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999943
No 456
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.10 E-value=0.29 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999987654
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.09 E-value=0.3 Score=53.75 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
..+|+|.|+.|+||||+|+.+..+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999987654
No 458
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.09 E-value=0.3 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
+|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 459
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.97 E-value=0.32 Score=55.62 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998653
No 460
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.96 E-value=1.1 Score=53.25 Aligned_cols=87 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCccccccc----ceEEEEEecCCCCHHHHHHHHHHHh------------ccCCCCccC
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMF----HVIIWVTVSRYWNTRKIQKQVLRQL------------SLHCKDRET 1063 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l------------~~~~~~~~~ 1063 (1866)
+++.|+|..|+|||||+..+.......... ..++|++....+....+.. +++.. .........
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~-i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE-IAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHH-HHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHH-HHHHcCCCHHHHhhCEEEEecCChHH
Q ss_pred HHHHHHHHHHHhC------CCcEEEEEeCC
Q 000202 1064 DAQVAEKLWQVLN------GEKFLLLLDDV 1087 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~------~kr~LlVlDdv 1087 (1866)
..+....+...+. .+.-+||+|.+
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCc
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.90 E-value=2.1 Score=54.18 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=27.9
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.+...|..+-..-.+++|.|.+|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344455432223458999999999999999999985544
No 462
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.90 E-value=0.3 Score=57.59 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=46.8
Q ss_pred CccEEEEEcCCCchHHHHHHHHhcCcccc-cccceEEEEEecCC-CCHHHHHHHHHHHhccCCCCccCHHH-----HHHH
Q 000202 998 TASKIGVYGVGGIGKTAALKALISYPEVK-VMFHVIIWVTVSRY-WNTRKIQKQVLRQLSLHCKDRETDAQ-----VAEK 1070 (1866)
Q Consensus 998 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~~ 1070 (1866)
.-..++|+|..|+|||||++.+.+.-..+ ..+.+ +++-+.+. ..+.++.+.+-..+-....+...... ..-.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt 251 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 251 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999885432111 23333 34666543 23333333320000001111111111 1111
Q ss_pred HHHHh--CCCcEEEEEeCCCC
Q 000202 1071 LWQVL--NGEKFLLLLDDVWE 1089 (1866)
Q Consensus 1071 l~~~L--~~kr~LlVlDdv~~ 1089 (1866)
+.+++ +++.+||++||+..
T Consensus 252 ~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 252 KAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEEEeCchH
Confidence 22233 68999999999864
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.88 E-value=0.36 Score=53.09 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 207 AGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 207 ~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 464
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.84 E-value=0.85 Score=50.81 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=29.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHH
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQ 1049 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 1049 (1866)
.+++|+|.+|+|||||++.+....... =..++|+.... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 579999999999999999985322211 12455665433 34444433
No 465
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.83 E-value=0.3 Score=53.55 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEEecCCCchhHHHHHHHH
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFN 231 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~ 231 (1866)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 466
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.82 E-value=0.42 Score=55.90 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=32.6
Q ss_pred ceeehhhHHHHHHhhhcC--CCCcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 188 LIGVEWRIKEIESLLRTG--SAGVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 188 ~vGr~~~l~~l~~~L~~~--~~~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
++|-...+..+...+... .....+|||.|..|+||||||+.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445555554444322 34567999999999999999999887554
No 467
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.81 E-value=0.32 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcC
Q 000202 999 ASKIGVYGVGGIGKTAALKALISY 1022 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~ 1022 (1866)
..+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999653
No 468
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.75 E-value=1.6 Score=53.21 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999999876654 3334443
No 469
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.69 E-value=0.44 Score=51.32 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=55.7
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEeeccccccccHHHHHHHHHHHHhccccccCccchhHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACNVRAAEETGRLDDLRKELLSKLLNDRNVKNFQNISVNFQSKRLA 288 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~L~ 288 (1866)
-++..++|..|.||||.+...+++...+-..+..+.-... .. .-...+.+.+............ ..+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d--~r----~~~~~i~s~~g~~~~a~~~~~~--~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID--NR----YSKEDVVSHMGEKEQAVAIKNS--REILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------------CEEECTTSCEEECEEESSS--THHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--cc----chHHHHHhhcCCceeeEeeCCH--HHHHHHHh
Confidence 4688999999999999999999876543333333321100 00 0000111111100000001111 22333344
Q ss_pred cCcEEEEEecCC--CHHHHHHHhhccCCCCCCCEEEEEccccc
Q 000202 289 RKKVLIVFDDVN--HPRQIELLIGRLDRFASGSQVIITTRDKQ 329 (1866)
Q Consensus 289 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 329 (1866)
++-=+|++|.+. +.++++.+....+ .|..||+|.++.+
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEecccc
Confidence 333489999875 3455555544222 2779999998653
No 470
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.67 E-value=1.3 Score=52.01 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCCCCHHHHHHHHHHH
Q 000202 999 ASKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRYWNTRKIQKQVLRQ 1053 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 1053 (1866)
-.++.|.|.+|+||||||.++.......+ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 35789999999999999999853322222 567777765 4566666666554
No 471
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.65 E-value=0.55 Score=52.32 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred HHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhh
Q 000202 197 EIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 197 ~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+...|..+-..-.+++|+|.+|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222334689999999999999999998743
No 472
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.60 E-value=0.33 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhc
Q 000202 999 ASKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 999 ~~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999943
No 473
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.55 E-value=0.66 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHhhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
.++|.|.+|+|||+|+..+++...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 578999999999999999988644
No 474
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.53 E-value=0.79 Score=56.57 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=34.9
Q ss_pred eehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEE
Q 000202 190 GVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFA 243 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (1866)
|...-+..|..++. +-..-.++.|.|.+|+||||+|.+++.....+=..++|+
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 33444445555552 323345899999999999999999998765542334554
No 475
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.52 E-value=0.37 Score=62.40 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=41.1
Q ss_pred ccCCCceeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 183 SESKDLIGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 183 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
.....++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 34467899999998888888754 378999999999999999999866544
No 476
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.45 E-value=0.34 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
...|+|.|++|+||||+|+.++.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 477
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.44 E-value=0.38 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|+|.|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 478
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.43 E-value=0.76 Score=54.80 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=38.3
Q ss_pred eehhhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 190 GVEWRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 190 Gr~~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
+...-+..|..+|. .+-..-+++.|.|.+|+||||||.+++......-..++|+..
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444455666665 332345689999999999999999999866544345677763
No 479
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.37 E-value=0.32 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.6
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...|.|.|++|+||||+|+.++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999988653
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.37 E-value=1.5 Score=54.38 Aligned_cols=71 Identities=17% Similarity=0.051 Sum_probs=42.8
Q ss_pred eeehhhHHHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhccc-cceEEEEeeccccccccHHHHHHHHHHHH
Q 000202 189 IGVEWRIKEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHF-EGSYFACNVRAAEETGRLDDLRKELLSKL 266 (1866)
Q Consensus 189 vGr~~~l~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 266 (1866)
.|...-+..|..++ .+-..-.++.|.|.+|+||||+|..++....... ..++|+.. ......+...++...
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHH
Confidence 34444455565555 3333445899999999999999999998665432 34556542 223345555555443
No 481
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.36 E-value=0.28 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.1
Q ss_pred cEEEEEEecCCCchhHHHHHHH
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVF 230 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~ 230 (1866)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999643
No 482
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.35 E-value=0.28 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred EEEEEEecCCCchhHHHHHHHHhhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3699999999999999999998653
No 483
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.35 E-value=0.48 Score=53.32 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCCcEEEEEEecCCCchhHHHHHHHHhhhc------cccceEEEE
Q 000202 196 KEIESLLRTGSAGVYKLGIWGIGGIGKTTIAGAVFNKISR------HFEGSYFAC 244 (1866)
Q Consensus 196 ~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~ 244 (1866)
..|..+|..+-..-.+++|+|.+|+||||||..++..... .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3445555432223458999999999999999999885322 124566665
No 484
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.34 E-value=0.77 Score=53.30 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhhcc
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKISRH 236 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~~~ 236 (1866)
..+|+++|.+|+||||++..++......
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999866544
No 485
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.26 E-value=0.33 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998865
No 486
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.21 E-value=0.3 Score=52.34 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=54.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCcccccccceEEEEEecCC---CCHHHHHHHHHHHhc-----cCCC-CccC-------
Q 000202 1000 SKIGVYGVGGIGKTAALKALISYPEVKVMFHVIIWVTVSRY---WNTRKIQKQVLRQLS-----LHCK-DRET------- 1063 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~-----~~~~-~~~~------- 1063 (1866)
..|-|++-.|.||||+|-.+. .+.-++=-.+.++.+.+. .....+++.+. +. .... ...+
T Consensus 29 g~i~v~tG~GkGKTTaA~Gla--lRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTA--ARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHH--HHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 345666667799999998773 222222122334433322 22233333321 10 0000 1111
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEeCCCC-----ccchhhhcCCCCCCCCCcEEEEccCChh
Q 000202 1064 DAQVAEKLWQVLNGEK-FLLLLDDVWE-----QIDLEAVGIPVPGSENGSKIFMASRELD 1117 (1866)
Q Consensus 1064 ~~~~~~~l~~~L~~kr-~LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~IivTTR~~~ 1117 (1866)
.......+++.+...+ =|||||++-. ....+.+...+.......-||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1223344555565444 5999999843 1222233222223334568999999853
No 487
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.18 E-value=0.34 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.6
Q ss_pred EEEEEEecCCCchhHHHHHHHHhh
Q 000202 210 YKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 210 ~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.+++|.|..|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
No 488
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.11 E-value=2.1 Score=53.25 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhccc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISRHF 237 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~~f 237 (1866)
.+.|.|.+|+||||++.++...+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 789999999999999999998665443
No 489
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.09 E-value=0.41 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.8
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999988653
No 490
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.03 E-value=0.36 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 491
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.02 E-value=0.35 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999854
No 492
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.94 E-value=0.28 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999886643
No 493
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.85 E-value=0.37 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCchhHHHHHHHHhh
Q 000202 209 VYKLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 209 ~~~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
..+|+|.|+.|+|||||++.++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999754
No 494
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.78 E-value=0.52 Score=56.17 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=36.5
Q ss_pred hhHHHHHHhhh-cCCCCcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEEe
Q 000202 193 WRIKEIESLLR-TGSAGVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFACN 245 (1866)
Q Consensus 193 ~~l~~l~~~L~-~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 245 (1866)
.-+..|...|. .+-..-+++.|+|.+|+||||||.+++......=..++|+..
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 33445556665 332345689999999999999999999765544345667653
No 495
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.76 E-value=1.8 Score=50.11 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=27.5
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|.+|+||||++..++...... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35689999999999999999999866543 3344443
No 496
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.69 E-value=0.31 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhc
Q 000202 1000 SKIGVYGVGGIGKTAALKALIS 1021 (1866)
Q Consensus 1000 ~vi~I~G~gGvGKTtLa~~v~~ 1021 (1866)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999943
No 497
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.68 E-value=0.58 Score=53.14 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.4
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhh
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKIS 234 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~ 234 (1866)
...+|.|.|++|+||||+|+.+..+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988653
No 498
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.68 E-value=0.39 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.1
Q ss_pred EEEEEecCCCchhHHHHHHHHhhhc
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKISR 235 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~~~ 235 (1866)
.|+|.|..|+||||+|+.+.++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 499
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.61 E-value=0.38 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHhh
Q 000202 211 KLGIWGIGGIGKTTIAGAVFNKI 233 (1866)
Q Consensus 211 ~i~I~G~gGiGKTtLA~~~~~~~ 233 (1866)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 500
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.60 E-value=0.79 Score=54.52 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred CcEEEEEEecCCCchhHHHHHHHHhhhccccceEEEE
Q 000202 208 GVYKLGIWGIGGIGKTTIAGAVFNKISRHFEGSYFAC 244 (1866)
Q Consensus 208 ~~~~i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (1866)
...+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 35689999999999999999999866543 3445544
Done!