Query 000204
Match_columns 1861
No_of_seqs 441 out of 1579
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 23:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0163 Myosin class VI heavy 98.9 2.3E-08 5E-13 122.6 15.2 29 838-866 1166-1194(1259)
2 PF07001 BAT2_N: BAT2 N-termin 98.5 4.1E-07 8.9E-12 99.7 10.7 67 8-100 16-82 (189)
3 KOG1029 Endocytic adaptor prot 98.4 5.4E-06 1.2E-10 103.0 17.5 28 564-591 315-345 (1118)
4 PTZ00121 MAEBL; Provisional 98.3 1.8E-05 3.8E-10 103.2 17.7 9 83-91 604-612 (2084)
5 PTZ00121 MAEBL; Provisional 98.2 3.5E-05 7.6E-10 100.6 18.8 8 318-325 832-839 (2084)
6 KOG1029 Endocytic adaptor prot 98.1 5.3E-05 1.1E-09 94.6 16.2 17 74-91 87-103 (1118)
7 PTZ00266 NIMA-related protein 97.8 0.00026 5.6E-09 93.3 15.6 23 934-956 782-804 (1021)
8 KOG4364 Chromatin assembly fac 97.7 0.0093 2E-07 74.9 25.4 44 809-854 492-537 (811)
9 PTZ00266 NIMA-related protein 97.7 0.00048 1E-08 90.9 15.4 15 52-66 25-39 (1021)
10 KOG2891 Surface glycoprotein [ 97.6 0.00084 1.8E-08 77.0 13.7 33 530-562 210-253 (445)
11 KOG4364 Chromatin assembly fac 97.5 0.0019 4.1E-08 80.7 16.7 23 1271-1293 749-771 (811)
12 PRK09510 tolA cell envelope in 97.5 0.0056 1.2E-07 74.1 19.4 20 872-891 348-370 (387)
13 KOG0163 Myosin class VI heavy 97.4 0.0026 5.6E-08 80.1 15.2 45 848-895 1212-1256(1259)
14 KOG4661 Hsp27-ERE-TATA-binding 97.1 0.032 6.9E-07 69.1 19.5 18 322-339 355-372 (940)
15 KOG2891 Surface glycoprotein [ 97.0 0.028 6.2E-07 65.0 17.3 8 388-395 157-164 (445)
16 PRK09510 tolA cell envelope in 96.9 0.067 1.5E-06 65.2 20.8 18 904-921 351-368 (387)
17 PF05262 Borrelia_P83: Borreli 96.9 0.024 5.3E-07 70.5 17.2 10 879-888 479-488 (489)
18 TIGR02794 tolA_full TolA prote 96.6 0.12 2.5E-06 62.3 19.0 10 842-851 289-298 (346)
19 COG3064 TolA Membrane protein 96.5 0.17 3.7E-06 59.9 18.8 9 829-837 336-344 (387)
20 KOG4661 Hsp27-ERE-TATA-binding 96.4 0.02 4.3E-07 70.8 11.7 19 237-256 257-275 (940)
21 KOG1144 Translation initiation 96.0 0.022 4.7E-07 72.7 9.2 11 1355-1365 939-949 (1064)
22 KOG1144 Translation initiation 95.9 0.048 1E-06 69.9 11.8 11 1132-1142 730-740 (1064)
23 KOG2072 Translation initiation 95.9 1.1 2.4E-05 58.6 23.1 13 763-775 898-910 (988)
24 KOG4817 Unnamed protein [Funct 95.0 0.6 1.3E-05 56.5 15.7 64 8-95 15-78 (468)
25 KOG2412 Nuclear-export-signal 95.0 0.73 1.6E-05 58.0 17.0 35 806-840 420-454 (591)
26 KOG2412 Nuclear-export-signal 94.5 1.7 3.6E-05 55.1 18.3 35 817-851 409-446 (591)
27 KOG0742 AAA+-type ATPase [Post 94.4 6.3 0.00014 49.2 22.3 12 721-732 252-263 (630)
28 PF09726 Macoilin: Transmembra 94.3 0.71 1.5E-05 60.3 15.4 9 188-196 196-204 (697)
29 PF13904 DUF4207: Domain of un 93.3 3 6.6E-05 48.8 16.9 9 547-555 89-97 (264)
30 KOG3054 Uncharacterized conser 92.1 1.4 3.1E-05 51.2 11.8 6 762-767 250-255 (299)
31 PF09726 Macoilin: Transmembra 91.6 6 0.00013 52.1 18.1 8 747-754 667-674 (697)
32 PF12037 DUF3523: Domain of un 90.9 18 0.00038 43.4 19.2 10 508-517 26-35 (276)
33 KOG3654 Uncharacterized CH dom 87.3 3.2 7E-05 52.1 10.3 17 75-91 17-33 (708)
34 PRK00409 recombination and DNA 84.9 20 0.00044 48.0 16.6 11 841-851 734-744 (782)
35 PRK00409 recombination and DNA 82.8 33 0.00071 46.2 17.2 12 277-288 222-233 (782)
36 PLN03086 PRLI-interacting fact 82.5 7 0.00015 50.5 10.6 9 817-825 186-194 (567)
37 PRK12705 hypothetical protein; 81.8 19 0.00041 46.2 13.9 13 547-559 21-33 (508)
38 TIGR01069 mutS2 MutS2 family p 81.0 38 0.00082 45.5 16.8 12 277-288 217-228 (771)
39 TIGR01069 mutS2 MutS2 family p 80.8 33 0.00071 46.1 16.2 9 842-850 724-732 (771)
40 KOG1103 Predicted coiled-coil 80.7 54 0.0012 40.3 16.2 97 913-1025 399-502 (561)
41 PF02029 Caldesmon: Caldesmon; 80.2 6.9 0.00015 49.8 9.4 10 876-885 460-469 (492)
42 COG4942 Membrane-bound metallo 77.9 91 0.002 39.6 17.5 8 786-793 357-364 (420)
43 PF12128 DUF3584: Protein of u 77.7 79 0.0017 44.5 18.9 21 1220-1240 1159-1179(1201)
44 PLN03086 PRLI-interacting fact 76.5 15 0.00032 47.7 10.8 6 1133-1138 432-437 (567)
45 KOG0980 Actin-binding protein 76.5 2.3E+02 0.0049 39.1 21.0 23 515-537 301-323 (980)
46 PRK11637 AmiB activator; Provi 76.3 1E+02 0.0022 38.4 17.6 6 851-856 387-392 (428)
47 KOG1103 Predicted coiled-coil 75.8 1.3E+02 0.0028 37.3 17.3 19 518-536 51-72 (561)
48 KOG2689 Predicted ubiquitin re 74.9 25 0.00053 42.2 11.1 10 802-811 253-262 (290)
49 KOG0579 Ste20-like serine/thre 74.5 64 0.0014 42.8 15.2 12 182-193 472-483 (1187)
50 PF09731 Mitofilin: Mitochondr 74.3 2E+02 0.0043 37.3 19.9 7 319-325 27-33 (582)
51 PLN02316 synthase/transferase 74.0 55 0.0012 45.5 15.5 12 379-390 140-151 (1036)
52 KOG3654 Uncharacterized CH dom 73.1 23 0.00049 45.1 10.7 16 205-220 119-134 (708)
53 KOG1363 Predicted regulator of 72.5 21 0.00046 45.3 10.6 9 291-299 63-71 (460)
54 KOG0579 Ste20-like serine/thre 71.5 1.3E+02 0.0029 40.0 16.9 12 346-357 574-585 (1187)
55 PRK13428 F0F1 ATP synthase sub 67.6 2.5E+02 0.0055 35.7 18.3 19 831-849 248-266 (445)
56 PLN02316 synthase/transferase 67.5 65 0.0014 44.8 14.1 9 267-275 120-128 (1036)
57 KOG1265 Phospholipase C [Lipid 66.9 2E+02 0.0042 39.7 17.3 16 318-333 752-767 (1189)
58 KOG2507 Ubiquitin regulatory p 66.7 14 0.0003 46.3 7.1 11 907-917 464-474 (506)
59 KOG3634 Troponin [Cytoskeleton 66.4 41 0.00089 41.2 10.7 15 749-763 295-309 (361)
60 PTZ00491 major vault protein; 65.9 1.8E+02 0.0039 39.9 17.1 10 150-159 198-207 (850)
61 KOG2507 Ubiquitin regulatory p 65.3 9 0.0002 47.8 5.2 6 785-790 345-350 (506)
62 PF10147 CR6_interact: Growth 65.3 2.1E+02 0.0045 33.8 15.6 6 531-536 65-70 (217)
63 KOG0921 Dosage compensation co 64.8 11 0.00024 50.6 6.2 15 45-59 1217-1231(1282)
64 PF06637 PV-1: PV-1 protein (P 64.0 2.1E+02 0.0045 36.2 15.9 15 718-732 414-428 (442)
65 KOG0994 Extracellular matrix g 63.0 2.3E+02 0.005 40.0 17.1 64 162-232 1193-1261(1758)
66 PF10168 Nup88: Nuclear pore c 62.7 1.4E+02 0.0031 40.1 15.6 15 81-95 83-97 (717)
67 KOG0161 Myosin class II heavy 62.4 2.9E+02 0.0062 41.3 19.1 15 498-512 699-713 (1930)
68 KOG2689 Predicted ubiquitin re 61.7 76 0.0016 38.3 11.5 12 810-821 250-261 (290)
69 PF06637 PV-1: PV-1 protein (P 61.5 1.8E+02 0.0038 36.8 14.7 8 518-525 138-145 (442)
70 KOG1265 Phospholipase C [Lipid 61.1 4E+02 0.0088 37.0 18.6 11 421-431 824-834 (1189)
71 KOG0161 Myosin class II heavy 61.0 2.8E+02 0.0061 41.3 18.7 9 185-193 302-310 (1930)
72 PF05914 RIB43A: RIB43A; Inte 56.0 5.2E+02 0.011 32.7 20.8 7 537-543 142-148 (379)
73 PTZ00491 major vault protein; 55.7 1.5E+02 0.0033 40.5 13.9 9 150-158 145-153 (850)
74 PF06098 Radial_spoke_3: Radia 55.6 1.1E+02 0.0024 37.2 11.8 9 336-344 3-11 (291)
75 PRK04863 mukB cell division pr 54.0 5.1E+02 0.011 38.1 19.3 16 1201-1216 1034-1049(1486)
76 KOG4722 Zn-finger protein [Gen 53.7 4.8E+02 0.01 33.5 16.5 17 189-205 82-98 (672)
77 PF15359 CDV3: Carnitine defic 53.2 34 0.00075 37.0 6.5 63 116-193 59-123 (129)
78 PRK12472 hypothetical protein; 53.1 1.6E+02 0.0035 38.1 12.9 10 469-478 122-131 (508)
79 KOG0994 Extracellular matrix g 52.0 5.8E+02 0.013 36.5 18.0 11 52-62 645-655 (1758)
80 PF04094 DUF390: Protein of un 48.6 7E+02 0.015 34.1 17.7 17 737-753 683-699 (828)
81 KOG0996 Structural maintenance 46.6 7.3E+02 0.016 35.7 18.0 13 852-864 665-677 (1293)
82 KOG3973 Uncharacterized conser 46.2 34 0.00073 42.1 5.6 29 71-99 310-338 (465)
83 KOG0681 Actin-related protein 45.7 1.3E+02 0.0029 39.4 10.7 6 281-286 23-28 (645)
84 KOG0681 Actin-related protein 44.8 1.5E+02 0.0032 38.9 10.9 11 304-314 11-21 (645)
85 KOG4403 Cell surface glycoprot 44.6 5.1E+02 0.011 33.5 15.0 8 495-502 182-189 (575)
86 PF07888 CALCOCO1: Calcium bin 42.6 9.7E+02 0.021 31.9 18.4 7 913-919 527-533 (546)
87 PRK12472 hypothetical protein; 42.4 4.3E+02 0.0094 34.5 14.3 10 908-917 480-489 (508)
88 KOG0933 Structural maintenance 41.7 1.2E+03 0.026 33.2 18.6 12 399-410 566-577 (1174)
89 PF04111 APG6: Autophagy prote 41.5 4.9E+02 0.011 31.9 14.3 8 717-724 166-173 (314)
90 COG4372 Uncharacterized protei 40.5 9.2E+02 0.02 31.0 18.2 12 550-561 82-93 (499)
91 PRK04863 mukB cell division pr 40.5 1.2E+03 0.025 34.7 19.5 10 867-876 759-768 (1486)
92 KOG2441 mRNA splicing factor/p 40.2 53 0.0011 41.1 6.0 8 756-763 415-422 (506)
93 TIGR02680 conserved hypothetic 40.2 8.2E+02 0.018 35.6 18.1 6 361-366 57-62 (1353)
94 KOG0982 Centrosomal protein Nu 39.8 9.8E+02 0.021 31.1 18.2 13 548-560 224-236 (502)
95 COG2433 Uncharacterized conser 38.8 8.1E+02 0.018 33.0 16.1 10 455-464 268-277 (652)
96 KOG3973 Uncharacterized conser 38.8 22 0.00047 43.7 2.6 20 36-55 441-460 (465)
97 KOG3915 Transcription regulato 37.4 3.6E+02 0.0078 34.9 12.3 20 36-55 71-90 (641)
98 KOG0976 Rho/Rac1-interacting s 34.8 1.3E+03 0.028 32.2 17.0 13 1534-1546 1197-1209(1265)
99 KOG0288 WD40 repeat protein Ti 33.4 1.2E+03 0.026 30.3 17.5 19 994-1012 380-398 (459)
100 KOG2668 Flotillins [Intracellu 32.9 1.1E+03 0.025 29.9 15.4 10 490-499 132-141 (428)
101 KOG2505 Ankyrin repeat protein 32.1 1.9E+02 0.0042 37.5 9.2 15 405-419 324-338 (591)
102 PRK07353 F0F1 ATP synthase sub 30.7 6.7E+02 0.015 26.6 15.2 91 589-679 34-124 (140)
103 KOG4572 Predicted DNA-binding 30.1 1.1E+03 0.024 32.9 15.2 15 69-84 229-243 (1424)
104 KOG3598 Thyroid hormone recept 30.0 1.3E+02 0.0027 43.1 7.5 12 153-165 1772-1783(2220)
105 TIGR02169 SMC_prok_A chromosom 29.6 1.7E+03 0.037 30.9 19.3 9 779-787 573-581 (1164)
106 PF05667 DUF812: Protein of un 29.6 1.5E+03 0.032 30.5 16.7 9 187-195 47-55 (594)
107 KOG0612 Rho-associated, coiled 29.2 7.4E+02 0.016 35.7 14.2 27 423-449 308-334 (1317)
108 KOG0345 ATP-dependent RNA heli 27.9 2.4E+02 0.0052 36.7 9.0 12 375-386 351-362 (567)
109 COG4499 Predicted membrane pro 27.9 1.8E+02 0.0038 36.9 7.7 19 545-563 344-362 (434)
110 KOG3915 Transcription regulato 27.2 5.7E+02 0.012 33.3 11.7 8 177-184 178-185 (641)
111 KOG2751 Beclin-like protein [S 25.5 1.6E+03 0.035 29.3 16.4 21 531-551 124-144 (447)
112 COG0711 AtpF F0F1-type ATP syn 23.8 1E+03 0.022 26.4 15.5 94 575-668 35-128 (161)
113 KOG0971 Microtubule-associated 23.2 2.3E+03 0.051 30.4 16.6 181 552-732 251-487 (1243)
114 TIGR01144 ATP_synt_b ATP synth 22.9 9.5E+02 0.021 25.7 16.3 119 589-707 24-142 (147)
115 COG4907 Predicted membrane pro 20.9 68 0.0015 41.0 2.6 26 41-107 569-594 (595)
116 KOG0996 Structural maintenance 20.8 2.8E+03 0.061 30.4 17.2 8 1227-1234 1167-1174(1293)
117 KOG0717 Molecular chaperone (D 20.8 2E+03 0.044 28.8 16.3 7 530-536 139-145 (508)
118 KOG2441 mRNA splicing factor/p 20.3 4.3E+02 0.0093 33.8 8.9 6 474-479 173-178 (506)
119 KOG2129 Uncharacterized conser 20.2 8.5E+02 0.018 31.5 11.3 112 512-641 216-328 (552)
120 PF15176 LRR19-TM: Leucine-ric 20.2 44 0.00096 35.1 0.8 7 1674-1680 83-89 (102)
121 PF07415 Herpes_LMP2: Gammaher 20.1 36 0.00077 42.0 0.1 42 92-133 13-54 (489)
No 1
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=98.87 E-value=2.3e-08 Score=122.58 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.5
Q ss_pred cccCCcccccCCCCccccccccccccccc
Q 000204 838 VSRGQRWNMSGDGDHYGRNIEMESDFHEN 866 (1861)
Q Consensus 838 ~~~p~~W~ApgDGd~~gRq~eIdSdq~EN 866 (1861)
..+..+|++|+||.||.||+++|++.+.-
T Consensus 1166 ~~k~gmWyaHFdGq~I~RQm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1166 NTKRGMWYAHFDGQWIARQMELHPDKPPI 1194 (1259)
T ss_pred CCccceEEEecCcHHHHhhheecCCCCCe
Confidence 46789999999999999999999887654
No 2
>PF07001 BAT2_N: BAT2 N-terminus; InterPro: IPR009738 This entry represents the N terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin [].
Probab=98.53 E-value=4.1e-07 Score=99.67 Aligned_cols=67 Identities=33% Similarity=0.434 Sum_probs=46.3
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCcccccCCCccccCCCCCCCcccccc
Q 000204 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (1861)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~g~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (1861)
.||.++|||..|--.+.--+ -....-..||.+|++- +.. --||||.||||||.||
T Consensus 16 ~Ky~~l~in~~YkGks~e~q------------------k~~~~~~hGmqsLGKv------~~a-RRmPpPaNLPSLKaEn 70 (189)
T PF07001_consen 16 PKYSSLNINSLYKGKSLEPQ------------------KSTVPRRHGMQSLGKV------PSA-RRMPPPANLPSLKAEN 70 (189)
T ss_pred ccceeechhhhhcCCccccc------------------cCCccCCCcceecccc------ccc-ccCCCCCCCcchhhhc
Confidence 38999999999933332200 0122236799999982 111 2289999999999999
Q ss_pred cccCCCCCCCCCC
Q 000204 88 ERFDSSGSNGGPA 100 (1861)
Q Consensus 88 ~~~d~~~~~~~~~ 100 (1861)
.++|++-.. .|.
T Consensus 71 ~GnDpnv~l-VP~ 82 (189)
T PF07001_consen 71 KGNDPNVSL-VPK 82 (189)
T ss_pred cCCCCCcee-ecC
Confidence 999977666 454
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=5.4e-06 Score=102.98 Aligned_cols=28 Identities=43% Similarity=0.593 Sum_probs=13.6
Q ss_pred CCchhhhHH---HHHHHHHhHHHHHHHHHHH
Q 000204 564 HDPVRESFE---AELERVQKMQEQERQRIIE 591 (1861)
Q Consensus 564 EdkrREelE---eElERkrKeEEEERqRqEE 591 (1861)
+|++++.++ +|++++++..+++.+|+.|
T Consensus 315 EDKrkeNy~kGqaELerRRq~leeqqqrere 345 (1118)
T KOG1029|consen 315 EDKRKENYEKGQAELERRRQALEEQQQRERE 345 (1118)
T ss_pred hhhhHHhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444443 5566665555554444333
No 4
>PTZ00121 MAEBL; Provisional
Probab=98.27 E-value=1.8e-05 Score=103.16 Aligned_cols=9 Identities=56% Similarity=0.663 Sum_probs=5.5
Q ss_pred ccccccccC
Q 000204 83 LRKEHERFD 91 (1861)
Q Consensus 83 lrkeh~~~d 91 (1861)
--+.-+|||
T Consensus 604 q~~~m~rfd 612 (2084)
T PTZ00121 604 QQKFMERFD 612 (2084)
T ss_pred HHHHHHhcC
Confidence 345666776
No 5
>PTZ00121 MAEBL; Provisional
Probab=98.22 E-value=3.5e-05 Score=100.56 Aligned_cols=8 Identities=38% Similarity=0.704 Sum_probs=3.8
Q ss_pred ccccCCCC
Q 000204 318 AYWEGDFD 325 (1861)
Q Consensus 318 ~~w~~~fd 325 (1861)
|.|+.+|+
T Consensus 832 pC~e~~~~ 839 (2084)
T PTZ00121 832 PCLEGSFG 839 (2084)
T ss_pred ccCCCCCC
Confidence 44544444
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=5.3e-05 Score=94.64 Aligned_cols=17 Identities=47% Similarity=0.677 Sum_probs=9.3
Q ss_pred cCCCCCCCcccccccccC
Q 000204 74 VPPPLNLPSLRKEHERFD 91 (1861)
Q Consensus 74 vp~plnlpslrkeh~~~d 91 (1861)
||+-|- |||-|---+|-
T Consensus 87 lP~~LP-Psll~~~~~~~ 103 (1118)
T KOG1029|consen 87 LPPVLP-PSLLKQPPRNA 103 (1118)
T ss_pred CCCCCC-hHHhccCCcCC
Confidence 344333 56777666655
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.79 E-value=0.00026 Score=93.28 Aligned_cols=23 Identities=30% Similarity=0.141 Sum_probs=12.2
Q ss_pred CCCCCCCCccccccccccccccc
Q 000204 934 ENECPSPSTFQENEVEYNRLLRS 956 (1861)
Q Consensus 934 ~~~~~~~s~f~~~~~~~~~~~r~ 956 (1861)
++--|+-++=+--|..|+|.-|.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~ 804 (1021)
T PTZ00266 782 EAVNPICSAEAHYERVYNHGNRG 804 (1021)
T ss_pred hhccchhccCCchhccccCCccc
Confidence 34444444544456666666555
No 8
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.68 E-value=0.0093 Score=74.88 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=30.9
Q ss_pred cccCCCCCccccccccccccCCc--chhhhccccCCcccccCCCCccc
Q 000204 809 KEFYGGPGIMSSRNYYKAGILEP--HMDEFTVSRGQRWNMSGDGDHYG 854 (1861)
Q Consensus 809 lefyggaGFVKKrPY~kGgttD~--h~DDY~~~~p~~W~ApgDGd~~g 854 (1861)
-.|||.+. ||...++++.+-- .+.||.++.++-|--.-.|.-+.
T Consensus 492 P~YyGTWr--KKS~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS 537 (811)
T KOG4364|consen 492 PGYYGTWR--KKSQVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLS 537 (811)
T ss_pred Cccccccc--ccccccccCCcccccccccccccCcccccccCCCcccc
Confidence 45787776 5555566665543 56789999999998877776443
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=97.67 E-value=0.00048 Score=90.92 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.2
Q ss_pred CCceEEeeccCcccc
Q 000204 52 GGGMLVLSRPRSSQK 66 (1861)
Q Consensus 52 ~ggm~vlsr~r~~~~ 66 (1861)
+=|.|.|.+.+.+..
T Consensus 25 gFGtVYLAkdk~tg~ 39 (1021)
T PTZ00266 25 RFGEVFLVKHKRTQE 39 (1021)
T ss_pred CCeEEEEEEECCCCe
Confidence 446777777765543
No 10
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=97.58 E-value=0.00084 Score=77.03 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCCCc-----------hhhhhHHHHhhhhhhhccc
Q 000204 530 KDFGSSSFDGRDPF-----------SAGLVGVVKKKKDVLKQTD 562 (1861)
Q Consensus 530 kDFg~S~fDgrDpf-----------~~~~~s~VKKKKEelKrae 562 (1861)
..|-.|+|+++..| ++.+|..++.+|...+-.+
T Consensus 210 iq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~ 253 (445)
T KOG2891|consen 210 IQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDD 253 (445)
T ss_pred ceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCC
Confidence 35889999999988 4566666777766655443
No 11
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=97.53 E-value=0.0019 Score=80.69 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=15.8
Q ss_pred CCcccceEEeeecccCCCCCCCC
Q 000204 1271 SQAETPVKLQFGLFSGPSLIPSP 1293 (1861)
Q Consensus 1271 ~~~e~pv~lqfglfsgpslipsp 1293 (1861)
-+.-+||+-|+-.-.||+--|-|
T Consensus 749 q~~~lqv~~qw~y~l~~~~sp~~ 771 (811)
T KOG4364|consen 749 QDSRLQVKKQWLYKLGLSPSPDK 771 (811)
T ss_pred ccccccccceeeeeecCCCCCCC
Confidence 34678888888877777644443
No 12
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.47 E-value=0.0056 Score=74.10 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=9.6
Q ss_pred CCccccc---CCCCCCCCCCCCC
Q 000204 872 GDVGWGQ---GRYRGNVHPPYPD 891 (1861)
Q Consensus 872 GD~gW~~---~sS~~~PfPP~pe 891 (1861)
||..|-. ..-+..+||++|.
T Consensus 348 Gd~aldrAA~~Aar~a~lP~pP~ 370 (387)
T PRK09510 348 GDPALCQAALAAAKTAKIPKPPS 370 (387)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCc
Confidence 4544443 2244456665553
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=97.38 E-value=0.0026 Score=80.10 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=32.2
Q ss_pred CCCCccccccccccccccccccccCCcccccCCCCCCCCCCCCCccCC
Q 000204 848 GDGDHYGRNIEMESDFHENITERYGDVGWGQGRYRGNVHPPYPDRIYP 895 (1861)
Q Consensus 848 gDGd~~gRq~eIdSdq~ENigerfGD~gW~~~sS~~~PfPP~peRmyq 895 (1861)
..|..-.|..+|.+..++..|+|+|+..+.+ ... .-|.+|..|.|
T Consensus 1212 eTgL~rKrGAEI~~~eFe~~W~r~Ggk~~~~-~~~--a~p~~~~a~~q 1256 (1259)
T KOG0163|consen 1212 ETGLTRKRGAEILEHEFEREWERNGGKAYKN-LGA--AKPNGPAAAMQ 1256 (1259)
T ss_pred hhccccccccccChHHHHHHHHHhCcHHhHh-hcc--cCCCchHHHHh
Confidence 4455677899999999999999999988877 222 34445544444
No 14
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.06 E-value=0.032 Score=69.13 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCCCc
Q 000204 322 GDFDMPRPSVLPHKPAHN 339 (1861)
Q Consensus 322 ~~fd~~~~~~~p~k~~~~ 339 (1861)
+-|||---.-||+-|.-.
T Consensus 355 rKfdfdAcnevpPapkeS 372 (940)
T KOG4661|consen 355 RKFDFDACNEVPPAPKES 372 (940)
T ss_pred ccccccccccCCCCCccc
Confidence 467887777777665554
No 15
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.99 E-value=0.028 Score=65.05 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=4.2
Q ss_pred cccCCccc
Q 000204 388 LQKDGFGA 395 (1861)
Q Consensus 388 l~k~w~~a 395 (1861)
|+-.||.-
T Consensus 157 ip~kwf~l 164 (445)
T KOG2891|consen 157 IPCKWFAL 164 (445)
T ss_pred Ccceeeee
Confidence 44456644
No 16
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=96.93 E-value=0.067 Score=65.17 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=7.5
Q ss_pred cccccccccCCCCCCCCC
Q 000204 904 SFGRSRYSMRHPRVLPPP 921 (1861)
Q Consensus 904 ~~~r~rys~rqprvlppp 921 (1861)
.|-|.-.....-.+||+|
T Consensus 351 aldrAA~~Aar~a~lP~p 368 (387)
T PRK09510 351 ALCQAALAAAKTAKIPKP 368 (387)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 455533333333444544
No 17
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=96.90 E-value=0.024 Score=70.52 Aligned_cols=10 Identities=0% Similarity=-0.250 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 000204 879 GRYRGNVHPP 888 (1861)
Q Consensus 879 ~sS~~~PfPP 888 (1861)
|.-...||.|
T Consensus 479 S~~eV~P~T~ 488 (489)
T PF05262_consen 479 SEVEVLPFTS 488 (489)
T ss_pred CccccCCCCC
Confidence 3444445544
No 18
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=96.55 E-value=0.12 Score=62.33 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.6
Q ss_pred CcccccCCCC
Q 000204 842 QRWNMSGDGD 851 (1861)
Q Consensus 842 ~~W~ApgDGd 851 (1861)
..+.+..||.
T Consensus 289 V~I~L~pdG~ 298 (346)
T TIGR02794 289 LRIRLAPDGT 298 (346)
T ss_pred EEEEECCCCC
Confidence 3344445554
No 19
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.17 Score=59.92 Aligned_cols=9 Identities=0% Similarity=0.043 Sum_probs=3.4
Q ss_pred CCcchhhhc
Q 000204 829 LEPHMDEFT 837 (1861)
Q Consensus 829 tD~h~DDY~ 837 (1861)
+|.++-+|.
T Consensus 336 pdGtl~~~~ 344 (387)
T COG3064 336 PDGTLLDIK 344 (387)
T ss_pred CCcceeecc
Confidence 333333333
No 20
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.43 E-value=0.02 Score=70.79 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=11.1
Q ss_pred CcccccCCCcccCCccccCC
Q 000204 237 MSPRLQSGQDVVGSRLRENG 256 (1861)
Q Consensus 237 m~pq~~~~~~~~g~~~~~~~ 256 (1861)
..|-+.+-+.+.|.+ ++++
T Consensus 257 eedlfdSahpeegDl-Dlas 275 (940)
T KOG4661|consen 257 EEDLFDSAHPEEGDL-DLAS 275 (940)
T ss_pred ccccccccCCccccc-cccc
Confidence 455566667777665 4443
No 21
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.022 Score=72.75 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=6.4
Q ss_pred CCCCccccccC
Q 000204 1355 NVPANFSLNQN 1365 (1861)
Q Consensus 1355 ~~~~~~~~nqn 1365 (1861)
.+.++|.||+-
T Consensus 939 ~ilpn~ifN~R 949 (1064)
T KOG1144|consen 939 QILPNCIFNKR 949 (1064)
T ss_pred hhhhHhhccCC
Confidence 34556667654
No 22
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.048 Score=69.85 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=5.9
Q ss_pred cceeeecccce
Q 000204 1132 SNLVLGFNEGV 1142 (1861)
Q Consensus 1132 ~~~vlgf~egv 1142 (1861)
|-+|||=-.|-
T Consensus 730 D~IvvcG~~Gp 740 (1064)
T KOG1144|consen 730 DQIVVCGLQGP 740 (1064)
T ss_pred CEEEEcCCCCc
Confidence 56666544443
No 23
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=1.1 Score=58.61 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=8.9
Q ss_pred CCCCCCcCccccc
Q 000204 763 RGKPFNSWRRDAF 775 (1861)
Q Consensus 763 R~Kp~~sw~R~~~ 775 (1861)
|+-+.+.|+|...
T Consensus 898 ~a~~~~~WrR~a~ 910 (988)
T KOG2072|consen 898 RAPEEAEWRRGAG 910 (988)
T ss_pred CCCcchHHhhccC
Confidence 4456778888763
No 24
>KOG4817 consensus Unnamed protein [Function unknown]
Probab=94.99 E-value=0.6 Score=56.46 Aligned_cols=64 Identities=33% Similarity=0.459 Sum_probs=41.4
Q ss_pred cceEEeecccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCceEEeeccCcccccCCCccccCCCCCCCcccccc
Q 000204 8 NKFVSVNLNKSYGQSYHQHQNNHHHNLSHSGYYGSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEH 87 (1861)
Q Consensus 8 ~k~~svnln~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~g~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh 87 (1861)
.||--|-||..|--.-.- .+- ..-..-+-||-.|.+ + ..---.|||-||||||-|-
T Consensus 15 ~K~talsin~~ykg~~~~-----------~aq------R~~vp~RhGmQslGK------a-~v~rrmpPPAnLPSLkaEn 70 (468)
T KOG4817|consen 15 PKFTALSINRMYKGSREP-----------SAQ------RNQVPRRHGMQSLGK------A-KVPRRMPPPANLPSLKAEN 70 (468)
T ss_pred cCcceeehhhhhcCCcCC-----------ccc------ccCCCccchhhhhcc------c-cccccCCCCCCCcchhhcc
Confidence 588888888888433100 000 112223678877764 1 2223579999999999999
Q ss_pred cccCCCCC
Q 000204 88 ERFDSSGS 95 (1861)
Q Consensus 88 ~~~d~~~~ 95 (1861)
-+.|++-.
T Consensus 71 ~g~dpn~~ 78 (468)
T KOG4817|consen 71 HGSDPNNL 78 (468)
T ss_pred cCCCCCce
Confidence 99998743
No 25
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.97 E-value=0.73 Score=58.03 Aligned_cols=35 Identities=6% Similarity=-0.080 Sum_probs=30.3
Q ss_pred CCccccCCCCCccccccccccccCCcchhhhcccc
Q 000204 806 VPRKEFYGGPGIMSSRNYYKAGILEPHMDEFTVSR 840 (1861)
Q Consensus 806 fprlefyggaGFVKKrPY~kGgttD~h~DDY~~~~ 840 (1861)
||++--...+.+.|+|||..+..++...++|.++-
T Consensus 420 ~Pdv~dlllA~l~KkCP~~VPf~~~~~~Eq~~k~m 454 (591)
T KOG2412|consen 420 FPDVGDLLLARLHKKCPYVVPFHIVNSTEQYQKMM 454 (591)
T ss_pred CchHHHHHHHHHHhcCCccccccccCcHHHHHHhh
Confidence 77877777888999999999999999888997653
No 26
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=94.46 E-value=1.7 Score=55.06 Aligned_cols=35 Identities=3% Similarity=-0.148 Sum_probs=24.8
Q ss_pred ccccccccccccCCc---chhhhccccCCcccccCCCC
Q 000204 817 IMSSRNYYKAGILEP---HMDEFTVSRGQRWNMSGDGD 851 (1861)
Q Consensus 817 FVKKrPY~kGgttD~---h~DDY~~~~p~~W~ApgDGd 851 (1861)
|.+.+-|.--.++|- .++.+++.||-...++=+.+
T Consensus 409 la~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~~~~~ 446 (591)
T KOG2412|consen 409 LAKVILYIWSQFPDVGDLLLARLHKKCPYVVPFHIVNS 446 (591)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcCCccccccccCc
Confidence 447787876666665 88888998887666665544
No 27
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=6.3 Score=49.22 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=7.3
Q ss_pred hHHHHHHhhhcC
Q 000204 721 DGERMVERITTS 732 (1861)
Q Consensus 721 D~eRmvERItTS 732 (1861)
+.+.+++.|+|.
T Consensus 252 eRekwl~aInTt 263 (630)
T KOG0742|consen 252 EREKWLEAINTT 263 (630)
T ss_pred HHHHHHHHHhhh
Confidence 445566666665
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.25 E-value=0.71 Score=60.33 Aligned_cols=9 Identities=56% Similarity=0.693 Sum_probs=5.0
Q ss_pred cccccccCC
Q 000204 188 SLQAALPAA 196 (1861)
Q Consensus 188 sl~a~~p~~ 196 (1861)
.|+-+||+.
T Consensus 196 ~l~~~lp~~ 204 (697)
T PF09726_consen 196 LLQQALPPE 204 (697)
T ss_pred HHHHhCCCc
Confidence 455566554
No 29
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=93.32 E-value=3 Score=48.82 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.1
Q ss_pred hhHHHHhhh
Q 000204 547 LVGVVKKKK 555 (1861)
Q Consensus 547 ~~s~VKKKK 555 (1861)
...|+..|.
T Consensus 89 ye~Wl~~K~ 97 (264)
T PF13904_consen 89 YEEWLSAKE 97 (264)
T ss_pred HHHHHHHHH
Confidence 345544443
No 30
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=1.4 Score=51.21 Aligned_cols=6 Identities=67% Similarity=0.911 Sum_probs=3.0
Q ss_pred cCCCCC
Q 000204 762 DRGKPF 767 (1861)
Q Consensus 762 dR~Kp~ 767 (1861)
||||+|
T Consensus 250 DRGKfI 255 (299)
T KOG3054|consen 250 DRGKFI 255 (299)
T ss_pred CCCceE
Confidence 665433
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.64 E-value=6 Score=52.15 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=3.4
Q ss_pred CCCCcccC
Q 000204 747 SSRNQFAR 754 (1861)
Q Consensus 747 v~RvhTSr 754 (1861)
..++++|.
T Consensus 667 ~~~~~~~~ 674 (697)
T PF09726_consen 667 AITPPTPH 674 (697)
T ss_pred CCCCCCcc
Confidence 33444443
No 32
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=90.93 E-value=18 Score=43.40 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=4.0
Q ss_pred CCcCCCCccc
Q 000204 508 NFSRDKRPLL 517 (1861)
Q Consensus 508 nFgrEkRll~ 517 (1861)
+++.||..+.
T Consensus 26 ~~~FDP~aLE 35 (276)
T PF12037_consen 26 ASGFDPEALE 35 (276)
T ss_pred cCCCCcHHHH
Confidence 3344443333
No 33
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=87.25 E-value=3.2 Score=52.07 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.5
Q ss_pred CCCCCCCcccccccccC
Q 000204 75 PPPLNLPSLRKEHERFD 91 (1861)
Q Consensus 75 p~plnlpslrkeh~~~d 91 (1861)
+.||---+-.++||--|
T Consensus 17 s~~l~ed~~~~~~ed~d 33 (708)
T KOG3654|consen 17 SKPLSEDPTKAPVEDPD 33 (708)
T ss_pred CcccccccccCCcCCCc
Confidence 45555555566777666
No 34
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.92 E-value=20 Score=47.96 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=5.9
Q ss_pred CCcccccCCCC
Q 000204 841 GQRWNMSGDGD 851 (1861)
Q Consensus 841 p~~W~ApgDGd 851 (1861)
...|=+||-|.
T Consensus 734 ~~v~IIHGkGt 744 (782)
T PRK00409 734 GEVLIIHGKGT 744 (782)
T ss_pred CEEEEEcCCCh
Confidence 44555565554
No 35
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.79 E-value=33 Score=46.16 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=5.7
Q ss_pred cCCCCCCeeecC
Q 000204 277 YFPGPLPLVRLK 288 (1861)
Q Consensus 277 ~~~gplplvrl~ 288 (1861)
+|.-|..+|-|+
T Consensus 222 ~y~ep~~~~~ln 233 (782)
T PRK00409 222 LYIEPQSVVELN 233 (782)
T ss_pred EEEEcHHHHHHH
Confidence 444454455444
No 36
>PLN03086 PRLI-interacting factor K; Provisional
Probab=82.51 E-value=7 Score=50.45 Aligned_cols=9 Identities=0% Similarity=-0.415 Sum_probs=4.5
Q ss_pred ccccccccc
Q 000204 817 IMSSRNYYK 825 (1861)
Q Consensus 817 FVKKrPY~k 825 (1861)
|+|-.|-..
T Consensus 186 ~vklqP~~~ 194 (567)
T PLN03086 186 YAKLQPDGV 194 (567)
T ss_pred EEEEeeccC
Confidence 555555443
No 37
>PRK12705 hypothetical protein; Provisional
Probab=81.81 E-value=19 Score=46.22 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=7.5
Q ss_pred hhHHHHhhhhhhh
Q 000204 547 LVGVVKKKKDVLK 559 (1861)
Q Consensus 547 ~~s~VKKKKEelK 559 (1861)
+..++++++.+.+
T Consensus 21 ~~~~~~~~~~~~~ 33 (508)
T PRK12705 21 LVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666665555
No 38
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.00 E-value=38 Score=45.52 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=6.5
Q ss_pred cCCCCCCeeecC
Q 000204 277 YFPGPLPLVRLK 288 (1861)
Q Consensus 277 ~~~gplplvrl~ 288 (1861)
+|.-|..+|-||
T Consensus 217 ~~~ep~~~~~ln 228 (771)
T TIGR01069 217 FYIEPQAIVKLN 228 (771)
T ss_pred EEEEcHHHHHHH
Confidence 455555555555
No 39
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.83 E-value=33 Score=46.09 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.1
Q ss_pred CcccccCCC
Q 000204 842 QRWNMSGDG 850 (1861)
Q Consensus 842 ~~W~ApgDG 850 (1861)
..+=+||-|
T Consensus 724 ~v~IIHGkG 732 (771)
T TIGR01069 724 VVLIIHGKG 732 (771)
T ss_pred EEEEEcCCC
Confidence 334445544
No 40
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.66 E-value=54 Score=40.34 Aligned_cols=97 Identities=20% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCCCCCCCCccccccCCCCCCCCCC---CCCCcccccccc----cccccccccccccccccccccccCCccccccCCCCc
Q 000204 913 RHPRVLPPPTLTSMQKPSYRRENEC---PSPSTFQENEVE----YNRLLRSESISLAGLDRSEQHNLAQPEIIDVQPEST 985 (1861)
Q Consensus 913 rqprvlppp~~~~~~~~s~~~~~~~---~~~s~f~~~~~~----~~~~~r~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 985 (1861)
+-||-+|||..+.+-++ ..|.+-. |+-|+..-.-+- --. .=.-+..-++|.++||-...|-- ++
T Consensus 399 gcP~~ie~~VpmPsPl~-S~GsslspS~~ASSSlt~~pcSSPV~~k~-llGssaSSp~~qssyqvginqrf-------ha 469 (561)
T KOG1103|consen 399 GCPRAIEPAVPMPSPLM-SIGSSLSPSLPASSSLTPRPCSSPVKKKP-LLGSSASSPAVQSSYQVGINQRF-------HA 469 (561)
T ss_pred CCCCCCCCCCCCCCccc-ccccccCCCCcccccCCCCCCCCcccccc-ccccccCChhhhhhhhhcchhhh-------hh
Confidence 45777777766666663 3443322 222222211110 000 00113345677778876333221 11
Q ss_pred hhhhhccccccccccCCCcceeecCCCCCCCCCCCccccc
Q 000204 986 ENEEQNLERSTTSRCDSQSSLSVSSAPDSPVHLSHDDLDV 1025 (1861)
Q Consensus 986 ~~e~~~~~r~~~~~~~sqsslsvsspp~sp~h~shdd~d~ 1025 (1861)
-.|++- ++.-.|-|+|.--| ||+- .||-|=.|-
T Consensus 470 --aRhkf~--aqad~dqqasgl~s-p~s~--dLSP~L~d~ 502 (561)
T KOG1103|consen 470 --ARHKFA--AQADMDQQASGLNS-PASM--DLSPDLEDL 502 (561)
T ss_pred --ccchhh--hcccCcccccccCC-CccC--CCCccHHHH
Confidence 234454 46677888776543 3332 245544443
No 41
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=80.17 E-value=6.9 Score=49.77 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.5
Q ss_pred cccCCCCCCC
Q 000204 876 WGQGRYRGNV 885 (1861)
Q Consensus 876 W~~~sS~~~P 885 (1861)
|+...+.++.
T Consensus 460 w~~~~~e~~~ 469 (492)
T PF02029_consen 460 WLTKTPEGSK 469 (492)
T ss_pred hhcCCCCCCC
Confidence 6655555553
No 42
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.87 E-value=91 Score=39.58 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=4.6
Q ss_pred cccccCCC
Q 000204 786 QDAENGHY 793 (1861)
Q Consensus 786 qdqENG~~ 793 (1861)
-||-+||+
T Consensus 357 ldhG~gy~ 364 (420)
T COG4942 357 LDHGGGYH 364 (420)
T ss_pred EEcCCccE
Confidence 45656655
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.70 E-value=79 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=11.5
Q ss_pred cchhhhhhhhcccccCccccc
Q 000204 1220 TQLSAASELMDHLNANSCSVV 1240 (1861)
Q Consensus 1220 ~~~~~~~~~~~~~~a~~~s~~ 1240 (1861)
.+..-.-.+++-|+..-|+..
T Consensus 1159 L~~~Nv~~l~~~~~~nnI~li 1179 (1201)
T PF12128_consen 1159 LHPNNVKKLLDMCNSNNISLI 1179 (1201)
T ss_pred CChHHHHHHHHHHHhCCceEE
Confidence 444445556666666545444
No 44
>PLN03086 PRLI-interacting factor K; Provisional
Probab=76.55 E-value=15 Score=47.67 Aligned_cols=6 Identities=17% Similarity=-0.130 Sum_probs=2.7
Q ss_pred ceeeec
Q 000204 1133 NLVLGF 1138 (1861)
Q Consensus 1133 ~~vlgf 1138 (1861)
|.|+|=
T Consensus 432 ~~V~Cp 437 (567)
T PLN03086 432 HNVVCP 437 (567)
T ss_pred cceeCC
Confidence 444443
No 45
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.46 E-value=2.3e+02 Score=39.05 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=13.3
Q ss_pred ccccCCCCCCCCcccccCCCCCC
Q 000204 515 PLLKREEPYQDDPFMKDFGSSSF 537 (1861)
Q Consensus 515 ll~KsEKpy~EDpfmkDFg~S~f 537 (1861)
..+-...|-.+|+|..+|+..+.
T Consensus 301 ~~pa~~~~~~~~~~~~~~~~~~~ 323 (980)
T KOG0980|consen 301 STPAGHDPEPLDLFEAEPASDPP 323 (980)
T ss_pred cccccCCCCCccccccCcccCCc
Confidence 33344455566667777775554
No 46
>PRK11637 AmiB activator; Provisional
Probab=76.34 E-value=1e+02 Score=38.45 Aligned_cols=6 Identities=0% Similarity=-0.075 Sum_probs=2.2
Q ss_pred Cccccc
Q 000204 851 DHYGRN 856 (1861)
Q Consensus 851 d~~gRq 856 (1861)
+++.++
T Consensus 387 ~~V~~G 392 (428)
T PRK11637 387 AQVRAG 392 (428)
T ss_pred CEECCC
Confidence 333333
No 47
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=75.78 E-value=1.3e+02 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=12.0
Q ss_pred cCCCCCCCCccc---ccCCCCC
Q 000204 518 KREEPYQDDPFM---KDFGSSS 536 (1861)
Q Consensus 518 KsEKpy~EDpfm---kDFg~S~ 536 (1861)
+|.+=-..|||+ .||-..+
T Consensus 51 kYGK~NinDP~~ALqRDf~~l~ 72 (561)
T KOG1103|consen 51 KYGKLNINDPFAALQRDFAILG 72 (561)
T ss_pred hhcccccCChHHHHHHHHHHHh
Confidence 455555678876 5776655
No 48
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=25 Score=42.18 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=4.8
Q ss_pred cCcCCCcccc
Q 000204 802 GGRAVPRKEF 811 (1861)
Q Consensus 802 G~R~fprlef 811 (1861)
=+++|||..|
T Consensus 253 f~t~fPR~tf 262 (290)
T KOG2689|consen 253 FHTGFPRVTF 262 (290)
T ss_pred eecCCCceec
Confidence 3455555433
No 49
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.54 E-value=64 Score=42.76 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=7.0
Q ss_pred ccCCCccccccc
Q 000204 182 RGEDFPSLQAAL 193 (1861)
Q Consensus 182 rgedfpsl~a~~ 193 (1861)
-|+-|-++|++.
T Consensus 472 ~G~~~~s~qs~~ 483 (1187)
T KOG0579|consen 472 QGSTFFSPQSSA 483 (1187)
T ss_pred cCccccCccccC
Confidence 455555666655
No 50
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=74.29 E-value=2e+02 Score=37.29 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=2.9
Q ss_pred cccCCCC
Q 000204 319 YWEGDFD 325 (1861)
Q Consensus 319 ~w~~~fd 325 (1861)
||+..|+
T Consensus 27 ~~n~~f~ 33 (582)
T PF09731_consen 27 KQNDNFR 33 (582)
T ss_pred hcChHHH
Confidence 4444443
No 51
>PLN02316 synthase/transferase
Probab=73.96 E-value=55 Score=45.49 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.2
Q ss_pred CCceeecccccc
Q 000204 379 GNMWRASSSLQK 390 (1861)
Q Consensus 379 ~~~Wr~~sPl~k 390 (1861)
+|.|++-+...+
T Consensus 140 ~~~~f~~P~~~~ 151 (1036)
T PLN02316 140 GNKLFVYPQVVK 151 (1036)
T ss_pred CCeEEecccccc
Confidence 344444444443
No 52
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=73.06 E-value=23 Score=45.10 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=7.9
Q ss_pred ccchhHhhhccccccc
Q 000204 205 DGFSQKQKQGMSQELG 220 (1861)
Q Consensus 205 ~~~~qk~k~~~~~~~~ 220 (1861)
+.+.-||+|.|+.--+
T Consensus 119 ea~fakqrqklgksaf 134 (708)
T KOG3654|consen 119 EAIFAKQRQKLGKSAF 134 (708)
T ss_pred HHHHHHHHHHhchhhe
Confidence 3444556655554433
No 53
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=72.48 E-value=21 Score=45.33 Aligned_cols=9 Identities=33% Similarity=0.590 Sum_probs=4.7
Q ss_pred CCCcccccc
Q 000204 291 SDWADDERD 299 (1861)
Q Consensus 291 sdwadderd 299 (1861)
..|-+|..+
T Consensus 63 ~~~r~~~~~ 71 (460)
T KOG1363|consen 63 FNYRDDNVD 71 (460)
T ss_pred hcccccCCC
Confidence 555555553
No 54
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.45 E-value=1.3e+02 Score=40.03 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=6.6
Q ss_pred cCCccccccccc
Q 000204 346 QRDSETGKVSSS 357 (1861)
Q Consensus 346 qr~~~~~k~~~~ 357 (1861)
+|.|+.|+|-..
T Consensus 574 ~~~~~~~~~k~q 585 (1187)
T KOG0579|consen 574 ERANAVSNIKTQ 585 (1187)
T ss_pred hhhhhhhhhhhh
Confidence 456666665533
No 55
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=67.56 E-value=2.5e+02 Score=35.75 Aligned_cols=19 Identities=26% Similarity=0.702 Sum_probs=9.8
Q ss_pred cchhhhccccCCcccccCC
Q 000204 831 PHMDEFTVSRGQRWNMSGD 849 (1861)
Q Consensus 831 ~h~DDY~~~~p~~W~ApgD 849 (1861)
+.++=-......+|..+.|
T Consensus 248 ~~~~~~~~~~~~rws~~~d 266 (445)
T PRK13428 248 PTLEVLRTAVSQRWSANSD 266 (445)
T ss_pred HHHHHHHHHHhCccCcccc
Confidence 3333333455666766644
No 56
>PLN02316 synthase/transferase
Probab=67.52 E-value=65 Score=44.83 Aligned_cols=9 Identities=44% Similarity=0.715 Sum_probs=4.2
Q ss_pred hhHhhhccc
Q 000204 267 RSEQVRKQE 275 (1861)
Q Consensus 267 ~~e~~rk~~ 275 (1861)
+.|+.||+.
T Consensus 120 ~~~~~~~~~ 128 (1036)
T PLN02316 120 ERENLRKRE 128 (1036)
T ss_pred hHHHHHHHH
Confidence 344555544
No 57
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=66.89 E-value=2e+02 Score=39.69 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=8.4
Q ss_pred ccccCCCCCCCCCCCC
Q 000204 318 AYWEGDFDMPRPSVLP 333 (1861)
Q Consensus 318 ~~w~~~fd~~~~~~~p 333 (1861)
+-|+++-=.|+--|||
T Consensus 752 pvy~eepfvF~KVvLp 767 (1189)
T KOG1265|consen 752 PVYEEEPFVFRKVVLP 767 (1189)
T ss_pred cccccCCcccceeccc
Confidence 4465543334445777
No 58
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=66.67 E-value=14 Score=46.26 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=5.5
Q ss_pred ccccccCCCCC
Q 000204 907 RSRYSMRHPRV 917 (1861)
Q Consensus 907 r~rys~rqprv 917 (1861)
|+|.-|+.|--
T Consensus 464 rsr~~~~Rp~~ 474 (506)
T KOG2507|consen 464 RSRRRMPRPAE 474 (506)
T ss_pred hhhhcCcCCcc
Confidence 55655544433
No 59
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=66.42 E-value=41 Score=41.23 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=6.4
Q ss_pred CCcccCCCCCccccC
Q 000204 749 RNQFARDNSSGFLDR 763 (1861)
Q Consensus 749 RvhTSrd~dSsf~dR 763 (1861)
+.+.+--..|+..+|
T Consensus 295 ~~~p~k~~~~sk~dr 309 (361)
T KOG3634|consen 295 RWKPPKVQISSKYDR 309 (361)
T ss_pred CCCCceeehhhhhhh
Confidence 334443334444444
No 60
>PTZ00491 major vault protein; Provisional
Probab=65.86 E-value=1.8e+02 Score=39.89 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.6
Q ss_pred CCcccccCCC
Q 000204 150 DGVGVYVPPS 159 (1861)
Q Consensus 150 ~~~~~~~~~s 159 (1861)
++.|.|+|..
T Consensus 198 t~~gaylP~v 207 (850)
T PTZ00491 198 RTPGAYLPGV 207 (850)
T ss_pred eccccccCCC
Confidence 3456666554
No 61
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=65.32 E-value=9 Score=47.79 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.3
Q ss_pred cccccc
Q 000204 785 TQDAEN 790 (1861)
Q Consensus 785 PqdqEN 790 (1861)
-|.+-+
T Consensus 345 rq~~~i 350 (506)
T KOG2507|consen 345 RQNQTI 350 (506)
T ss_pred Hhcccc
Confidence 344433
No 62
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=65.31 E-value=2.1e+02 Score=33.78 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=3.7
Q ss_pred cCCCCC
Q 000204 531 DFGSSS 536 (1861)
Q Consensus 531 DFg~S~ 536 (1861)
-||-.|
T Consensus 65 ~fGRYG 70 (217)
T PF10147_consen 65 LFGRYG 70 (217)
T ss_pred HHHhhh
Confidence 566666
No 63
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=64.79 E-value=11 Score=50.60 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=7.2
Q ss_pred CCCCCCCCCceEEee
Q 000204 45 ARPTGGGGGGMLVLS 59 (1861)
Q Consensus 45 ~~~~~g~~ggm~vls 59 (1861)
+++|+|+|||.-=.|
T Consensus 1217 ~~~Gagvg~GyrGvs 1231 (1282)
T KOG0921|consen 1217 ANYGAGVGNGYRGVS 1231 (1282)
T ss_pred CCccccccCCCcccc
Confidence 344555555653333
No 64
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=64.04 E-value=2.1e+02 Score=36.19 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=8.3
Q ss_pred CchhHHHHHHhhhcC
Q 000204 718 DWEDGERMVERITTS 732 (1861)
Q Consensus 718 DweD~eRmvERItTS 732 (1861)
|-..++..-.+|..|
T Consensus 414 dp~~leefkrriles 428 (442)
T PF06637_consen 414 DPASLEEFKRRILES 428 (442)
T ss_pred ChHHHHHHHHHHHhc
Confidence 444555556666555
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.96 E-value=2.3e+02 Score=39.99 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=35.3
Q ss_pred cCCCCCCCCCCCccccceeeccCCCccccccccCCCCchh--hhcccch---hHhhhcccccccccccCCCCCCCc
Q 000204 162 SGTVGPALSSFAPAEKASVLRGEDFPSLQAALPAASGSEK--KQKDGFS---QKQKQGMSQELGNNEQKDGCRFNA 232 (1861)
Q Consensus 162 ~~~~~~~~~~~~~~e~~~vlrgedfpsl~a~~p~~~~~~~--k~~~~~~---qk~k~~~~~~~~~~e~~~~~~~~~ 232 (1861)
+|.++|-...|..+|+-+ --+|+.|-+++++.. ++-...- .||-|.+-+.|..-|.+-.+-.++
T Consensus 1193 tGv~gay~s~f~~me~kl-------~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~ 1261 (1758)
T KOG0994|consen 1193 TGVLGAYASRFLDMEEKL-------EEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNS 1261 (1758)
T ss_pred ccCchhhHhHHHHHHHHH-------HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 566666555555554322 124566655666555 2222222 377788888888666665554433
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.66 E-value=1.4e+02 Score=40.14 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.1
Q ss_pred CcccccccccCCCCC
Q 000204 81 PSLRKEHERFDSSGS 95 (1861)
Q Consensus 81 pslrkeh~~~d~~~~ 95 (1861)
|-+--.|-.+-+.|.
T Consensus 83 ~~f~v~~i~~n~~g~ 97 (717)
T PF10168_consen 83 PLFEVHQISLNPTGS 97 (717)
T ss_pred CceeEEEEEECCCCC
Confidence 445555555544443
No 67
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.38 E-value=2.9e+02 Score=41.26 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCcCC
Q 000204 498 RGFPHNDPMHNFSRD 512 (1861)
Q Consensus 498 nG~~g~DP~~nFgrE 512 (1861)
.|||+.-++.-|...
T Consensus 699 ~GfPnr~~~~eFrqR 713 (1930)
T KOG0161|consen 699 QGFPNRMPFQEFRQR 713 (1930)
T ss_pred hhCccccchHHHHHh
Confidence 456666666555433
No 68
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=76 Score=38.33 Aligned_cols=12 Identities=8% Similarity=0.002 Sum_probs=5.3
Q ss_pred ccCCCCCccccc
Q 000204 810 EFYGGPGIMSSR 821 (1861)
Q Consensus 810 efyggaGFVKKr 821 (1861)
+|....+|+++.
T Consensus 250 P~~f~t~fPR~t 261 (290)
T KOG2689|consen 250 PYSFHTGFPRVT 261 (290)
T ss_pred CeeeecCCCcee
Confidence 344444444443
No 69
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=61.46 E-value=1.8e+02 Score=36.75 Aligned_cols=8 Identities=25% Similarity=0.302 Sum_probs=3.8
Q ss_pred cCCCCCCC
Q 000204 518 KREEPYQD 525 (1861)
Q Consensus 518 KsEKpy~E 525 (1861)
.+|++..|
T Consensus 138 ~sekqc~e 145 (442)
T PF06637_consen 138 LSEKQCQE 145 (442)
T ss_pred HhHhhhhH
Confidence 34555443
No 70
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=61.09 E-value=4e+02 Score=36.99 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=5.4
Q ss_pred ccccCcccccc
Q 000204 421 KFMSSPFRDTV 431 (1861)
Q Consensus 421 kYv~Sp~R~~~ 431 (1861)
-|++--+-+.+
T Consensus 824 dyvpd~~~d~~ 834 (1189)
T KOG1265|consen 824 DYVPDDLSDLV 834 (1189)
T ss_pred ccCCchhhhHH
Confidence 45555444444
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.03 E-value=2.8e+02 Score=41.34 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=5.2
Q ss_pred CCccccccc
Q 000204 185 DFPSLQAAL 193 (1861)
Q Consensus 185 dfpsl~a~~ 193 (1861)
||.-|....
T Consensus 302 ~Y~f~~~~~ 310 (1930)
T KOG0161|consen 302 DYKFLSNGE 310 (1930)
T ss_pred hhhhhcccc
Confidence 566555555
No 72
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=55.98 E-value=5.2e+02 Score=32.67 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=3.6
Q ss_pred CCCCCCc
Q 000204 537 FDGRDPF 543 (1861)
Q Consensus 537 fDgrDpf 543 (1861)
|+|-|..
T Consensus 142 F~GEDl~ 148 (379)
T PF05914_consen 142 FDGEDLN 148 (379)
T ss_pred cccccCC
Confidence 5555444
No 73
>PTZ00491 major vault protein; Provisional
Probab=55.66 E-value=1.5e+02 Score=40.54 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=5.0
Q ss_pred CCcccccCC
Q 000204 150 DGVGVYVPP 158 (1861)
Q Consensus 150 ~~~~~~~~~ 158 (1861)
.++|.|.|-
T Consensus 145 ~gPGtYlPr 153 (850)
T PTZ00491 145 KGPGTYYPR 153 (850)
T ss_pred ECCeeecCC
Confidence 455666664
No 74
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=55.62 E-value=1.1e+02 Score=37.18 Aligned_cols=9 Identities=11% Similarity=0.309 Sum_probs=3.9
Q ss_pred CCCcccccc
Q 000204 336 PAHNVFERW 344 (1861)
Q Consensus 336 ~~~~~~~~~ 344 (1861)
|++-.||+|
T Consensus 3 ~~NiM~D~R 11 (291)
T PF06098_consen 3 YGNIMYDRR 11 (291)
T ss_pred cccccCCCC
Confidence 344444444
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.95 E-value=5.1e+02 Score=38.07 Aligned_cols=16 Identities=44% Similarity=0.555 Sum_probs=8.6
Q ss_pred chhhhhHHHHHhhhhh
Q 000204 1201 GILQETDKAIQDLVVQ 1216 (1861)
Q Consensus 1201 ~~~~e~ek~~q~l~i~ 1216 (1861)
..++|++..|++|-|+
T Consensus 1034 e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 1034 QMLQELKQELQDLGVP 1049 (1486)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3445555555555555
No 76
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=53.72 E-value=4.8e+02 Score=33.49 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=9.3
Q ss_pred ccccccCCCCchhhhcc
Q 000204 189 LQAALPAASGSEKKQKD 205 (1861)
Q Consensus 189 l~a~~p~~~~~~~k~~~ 205 (1861)
|||..|+--+++.|-++
T Consensus 82 lqagtpplqVnEEk~~a 98 (672)
T KOG4722|consen 82 LQAGTPPLQVNEEKEKA 98 (672)
T ss_pred HhcCCCCCCCchhhccc
Confidence 45555666665554443
No 77
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=53.17 E-value=34 Score=37.03 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=34.0
Q ss_pred CCCCCCCccccccccccCcccCCCCccCCCCCCCCCcccccCCCCCcCC-CCCCCCCCCccccceeec-cCCCccccccc
Q 000204 116 TGWTKPGTAVGSDQKINDKVDQGPHSVDGLSKGNDGVGVYVPPSVRSGT-VGPALSSFAPAEKASVLR-GEDFPSLQAAL 193 (1861)
Q Consensus 116 ~gw~kp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~e~~~vlr-gedfpsl~a~~ 193 (1861)
.=|.|++++.......- +... --...++|||.||.+|-.. .-....+ |==|- =+-||||+|+.
T Consensus 59 GPWnk~~~~~~~~~~~~--v~~~-------~~p~~~~gvY~PP~~R~~~~~r~~~qg------aPdI~Se~~FPSL~sta 123 (129)
T PF15359_consen 59 GPWNKSAPAQAPPAPAP--VEEP-------PEPATTSGVYRPPAARNTTTKRKRPQG------APDIFSEEQFPSLQSTA 123 (129)
T ss_pred CCCcCCCCCCCCCCCCc--cCCC-------CCCCCCCceecCcccccccccCCCCCC------CCCccccccccchHHHh
Confidence 36999887544444432 1111 1135688999999999332 1111111 01111 24799999874
No 78
>PRK12472 hypothetical protein; Provisional
Probab=53.10 E-value=1.6e+02 Score=38.11 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=5.4
Q ss_pred cccccccccc
Q 000204 469 QYGSEQYNRF 478 (1861)
Q Consensus 469 ~ygi~qynr~ 478 (1861)
.|+||..+|+
T Consensus 122 GiaIHGt~~p 131 (508)
T PRK12472 122 GIALHGGPLP 131 (508)
T ss_pred eEEEecCCCC
Confidence 3566655543
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.99 E-value=5.8e+02 Score=36.54 Aligned_cols=11 Identities=27% Similarity=0.344 Sum_probs=5.4
Q ss_pred CCceEEeeccC
Q 000204 52 GGGMLVLSRPR 62 (1861)
Q Consensus 52 ~ggm~vlsr~r 62 (1861)
+=||+++.+.|
T Consensus 645 ~c~~~~~~dd~ 655 (1758)
T KOG0994|consen 645 RCGMAIPKDDR 655 (1758)
T ss_pred ccccccccccc
Confidence 44555555443
No 80
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=48.56 E-value=7e+02 Score=34.15 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=8.1
Q ss_pred CCCcCcccccCCCCccc
Q 000204 737 SSGLHRSFDMSSRNQFA 753 (1861)
Q Consensus 737 Ssd~nd~~e~v~RvhTS 753 (1861)
++-+.++.....|+-++
T Consensus 683 ~dav~rl~ragrrvgi~ 699 (828)
T PF04094_consen 683 SDAVSRLERAGRRVGIS 699 (828)
T ss_pred hhHHHHHHhhccccccc
Confidence 34444555555555433
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.55 E-value=7.3e+02 Score=35.65 Aligned_cols=13 Identities=23% Similarity=0.120 Sum_probs=6.8
Q ss_pred ccccccccccccc
Q 000204 852 HYGRNIEMESDFH 864 (1861)
Q Consensus 852 ~~gRq~eIdSdq~ 864 (1861)
.+||..-|-++..
T Consensus 665 nLgraTFi~LDki 677 (1293)
T KOG0996|consen 665 NLGRATFIILDKI 677 (1293)
T ss_pred CCCceeEEehHhh
Confidence 3566655555433
No 82
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=46.20 E-value=34 Score=42.10 Aligned_cols=29 Identities=38% Similarity=0.804 Sum_probs=22.7
Q ss_pred ccccCCCCCCCcccccccccCCCCCCCCC
Q 000204 71 KLSVPPPLNLPSLRKEHERFDSSGSNGGP 99 (1861)
Q Consensus 71 klsvp~plnlpslrkeh~~~d~~~~~~~~ 99 (1861)
.-.||||-..||.++-..-||.-|+-||.
T Consensus 310 nE~~ppppempswqqqq~~~~~~ggrggg 338 (465)
T KOG3973|consen 310 NEMVPPPPEMPSWQQQQHTFDRQGGRGGG 338 (465)
T ss_pred ccCCCCCCCCCcHHHhcCCCCCCCCcCCC
Confidence 34589999999999998888887664443
No 83
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=45.68 E-value=1.3e+02 Score=39.35 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=3.0
Q ss_pred CCCeee
Q 000204 281 PLPLVR 286 (1861)
Q Consensus 281 plplvr 286 (1861)
+.|||-
T Consensus 23 ~~piVI 28 (645)
T KOG0681|consen 23 TIPIVI 28 (645)
T ss_pred CCcEEE
Confidence 445554
No 84
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=44.81 E-value=1.5e+02 Score=38.94 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=4.4
Q ss_pred CccccccCCCC
Q 000204 304 ITDRDRDHGFS 314 (1861)
Q Consensus 304 ~~~r~r~~g~s 314 (1861)
++++.|..+++
T Consensus 11 ~p~p~~~q~~~ 21 (645)
T KOG0681|consen 11 FPDPNREQSYS 21 (645)
T ss_pred cCCchhhhccc
Confidence 34444444433
No 85
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.63 E-value=5.1e+02 Score=33.45 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 000204 495 SGGRGFPH 502 (1861)
Q Consensus 495 ~G~nG~~g 502 (1861)
+|.+-..+
T Consensus 182 Lgikd~~h 189 (575)
T KOG4403|consen 182 LGIKDRSH 189 (575)
T ss_pred hccCchHH
Confidence 34443333
No 86
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.62 E-value=9.7e+02 Score=31.94 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 000204 913 RHPRVLP 919 (1861)
Q Consensus 913 rqprvlp 919 (1861)
-||-.+-
T Consensus 527 ~qp~p~~ 533 (546)
T PF07888_consen 527 SQPAPIS 533 (546)
T ss_pred CCCCCCC
Confidence 4444333
No 87
>PRK12472 hypothetical protein; Provisional
Probab=42.42 E-value=4.3e+02 Score=34.53 Aligned_cols=10 Identities=30% Similarity=0.560 Sum_probs=4.8
Q ss_pred cccccCCCCC
Q 000204 908 SRYSMRHPRV 917 (1861)
Q Consensus 908 ~rys~rqprv 917 (1861)
.||.-+||..
T Consensus 480 ~~~~~~~~~~ 489 (508)
T PRK12472 480 QRYPKPQPAN 489 (508)
T ss_pred ccCCCCCCCc
Confidence 4555555443
No 88
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.73 E-value=1.2e+03 Score=33.24 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=5.3
Q ss_pred CCCCCCccccCC
Q 000204 399 GDNRNGICERPS 410 (1861)
Q Consensus 399 gner~GigvRp~ 410 (1861)
|+-+-.+-++|.
T Consensus 566 g~l~rRvTiIPL 577 (1174)
T KOG0933|consen 566 GNLRRRVTIIPL 577 (1174)
T ss_pred ccccceeEEEec
Confidence 333334445554
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.52 E-value=4.9e+02 Score=31.90 Aligned_cols=8 Identities=13% Similarity=0.543 Sum_probs=3.0
Q ss_pred CCchhHHH
Q 000204 717 GDWEDGER 724 (1861)
Q Consensus 717 dDweD~eR 724 (1861)
.+|.++..
T Consensus 166 V~W~EINA 173 (314)
T PF04111_consen 166 VEWNEINA 173 (314)
T ss_dssp --HHHHHH
T ss_pred CChHHHHH
Confidence 35664433
No 90
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=40.55 E-value=9.2e+02 Score=31.04 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=5.3
Q ss_pred HHHhhhhhhhcc
Q 000204 550 VVKKKKDVLKQT 561 (1861)
Q Consensus 550 ~VKKKKEelKra 561 (1861)
-++-++++++.+
T Consensus 82 qlr~~rtel~~a 93 (499)
T COG4372 82 QLRALRTELGTA 93 (499)
T ss_pred HHHHHHHHHHHH
Confidence 344444544433
No 91
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.45 E-value=1.2e+03 Score=34.68 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=6.9
Q ss_pred cccccCCccc
Q 000204 867 ITERYGDVGW 876 (1861)
Q Consensus 867 igerfGD~gW 876 (1861)
+..+|+|..|
T Consensus 759 v~~~~~~~~~ 768 (1486)
T PRK04863 759 VVVKIADRQW 768 (1486)
T ss_pred eeeeecchhh
Confidence 5666777777
No 92
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=40.19 E-value=53 Score=41.13 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=3.9
Q ss_pred CCCccccC
Q 000204 756 NSSGFLDR 763 (1861)
Q Consensus 756 ~dSsf~dR 763 (1861)
.+|.|.++
T Consensus 415 ~dSg~~~d 422 (506)
T KOG2441|consen 415 LDSGFADD 422 (506)
T ss_pred cccccccc
Confidence 34555554
No 93
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.17 E-value=8.2e+02 Score=35.62 Aligned_cols=6 Identities=50% Similarity=1.049 Sum_probs=2.7
Q ss_pred ccCCCC
Q 000204 361 RVDPFG 366 (1861)
Q Consensus 361 ~~~~~~ 366 (1861)
.+|||+
T Consensus 57 rln~~~ 62 (1353)
T TIGR02680 57 RLEPDG 62 (1353)
T ss_pred ccCCCC
Confidence 344444
No 94
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.79 E-value=9.8e+02 Score=31.15 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=6.6
Q ss_pred hHHHHhhhhhhhc
Q 000204 548 VGVVKKKKDVLKQ 560 (1861)
Q Consensus 548 ~s~VKKKKEelKr 560 (1861)
..++++|..++..
T Consensus 224 v~flerkv~eled 236 (502)
T KOG0982|consen 224 VRFLERKVQELED 236 (502)
T ss_pred HHHHHHHHHHhhc
Confidence 3555555555443
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=8.1e+02 Score=33.04 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=4.1
Q ss_pred cccccccccC
Q 000204 455 HSFNSQRAER 464 (1861)
Q Consensus 455 sS~s~r~~Er 464 (1861)
+-.+.|+..+
T Consensus 268 ~~~S~r~~~~ 277 (652)
T COG2433 268 DLESRRGIDR 277 (652)
T ss_pred eeeccccCCH
Confidence 3334444443
No 96
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=38.79 E-value=22 Score=43.67 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000204 36 HSGYYGSNRARPTGGGGGGM 55 (1861)
Q Consensus 36 ~~g~~~~~~~~~~~g~~ggm 55 (1861)
+||+.|..+|.+||||+||+
T Consensus 441 gggr~gggrgrgggggrg~y 460 (465)
T KOG3973|consen 441 GGGRDGGGRGRGGGGGRGGY 460 (465)
T ss_pred CCCCCCCCCCCCCCCCCccc
Confidence 44444444444444555543
No 97
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.36 E-value=3.6e+02 Score=34.92 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCCCCCce
Q 000204 36 HSGYYGSNRARPTGGGGGGM 55 (1861)
Q Consensus 36 ~~g~~~~~~~~~~~g~~ggm 55 (1861)
++|+.+...+.+|+++||||
T Consensus 71 ~s~~g~~s~~~gg~~~~~g~ 90 (641)
T KOG3915|consen 71 GSGGGGGSSGNGGGGGGGGG 90 (641)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33333334444444444444
No 98
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.76 E-value=1.3e+03 Score=32.18 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=9.7
Q ss_pred CCCCccccceeEE
Q 000204 1534 PRRPRRQRTEFRV 1546 (1861)
Q Consensus 1534 ~r~~~~~rtefrv 1546 (1861)
+++.+--|||||-
T Consensus 1197 ~~tvlaeRt~l~c 1209 (1265)
T KOG0976|consen 1197 PHTVLAERTELRC 1209 (1265)
T ss_pred chhhhhhhhheee
Confidence 4567778999984
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=33.44 E-value=1.2e+03 Score=30.30 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=10.6
Q ss_pred cccccccCCCcceeecCCC
Q 000204 994 RSTTSRCDSQSSLSVSSAP 1012 (1861)
Q Consensus 994 r~~~~~~~sqsslsvsspp 1012 (1861)
|-..-+|.|-.+-.|=||-
T Consensus 380 sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred eccccccccccceeEECCC
Confidence 3345566666666665553
No 100
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=32.91 E-value=1.1e+03 Score=29.93 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=3.9
Q ss_pred cccccCCCCC
Q 000204 490 KSSFSSGGRG 499 (1861)
Q Consensus 490 K~sfs~G~nG 499 (1861)
+.++-+|+-|
T Consensus 132 va~~dl~~mG 141 (428)
T KOG2668|consen 132 VAQLDLGQMG 141 (428)
T ss_pred Hhhhhhhhcc
Confidence 3334444333
No 101
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=32.13 E-value=1.9e+02 Score=37.55 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=10.2
Q ss_pred ccccCCCcccccccc
Q 000204 405 ICERPSSLNREANKE 419 (1861)
Q Consensus 405 igvRp~S~~R~a~ke 419 (1861)
|.+.|.-.+|-+.++
T Consensus 324 ir~~PFttkRPt~~E 338 (591)
T KOG2505|consen 324 IRTFPFTTKRPTIKE 338 (591)
T ss_pred ccccCCCCCCCchHH
Confidence 446777777777766
No 102
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=30.70 E-value=6.7e+02 Score=26.57 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000204 589 IIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (1861)
Q Consensus 589 qEEEqRRrEEEaRREEEERERkEREEEEErRReEEErREReEeEEeEReEaERRAEEERkRrEEEeRRreEEEERRrEEE 668 (1861)
.++.+.+-.......++.+...+....+-+.+..+.+.+.....+..+.++.+..++.....+++..+..++.+...+.+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 113 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQ 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 000204 669 KQKLLELEERI 679 (1861)
Q Consensus 669 EqKRkEEEEre 679 (1861)
+++...+-...
T Consensus 114 ~~~a~~~l~~~ 124 (140)
T PRK07353 114 KQAALAQLEQQ 124 (140)
T ss_pred HHHHHHHHHHH
No 103
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=30.09 E-value=1.1e+03 Score=32.88 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=9.6
Q ss_pred CCccccCCCCCCCccc
Q 000204 69 VPKLSVPPPLNLPSLR 84 (1861)
Q Consensus 69 ~~klsvp~plnlpslr 84 (1861)
--|-|--.|+| |-++
T Consensus 229 elkrSTel~in-PD~~ 243 (1424)
T KOG4572|consen 229 ELKRSTELPIN-PDEK 243 (1424)
T ss_pred hhccccccCCC-CCCc
Confidence 55666667777 6554
No 104
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=30.05 E-value=1.3e+02 Score=43.15 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.9
Q ss_pred ccccCCCCCcCCC
Q 000204 153 GVYVPPSVRSGTV 165 (1861)
Q Consensus 153 ~~~~~~s~~~~~~ 165 (1861)
..|+.| .++|++
T Consensus 1772 ~yyL~P-lPlPpe 1783 (2220)
T KOG3598|consen 1772 DYYLAP-LPLPPE 1783 (2220)
T ss_pred hhhccC-CCCCcc
Confidence 456555 444443
No 105
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=29.58 E-value=1.7e+03 Score=30.89 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=4.5
Q ss_pred CCccccccc
Q 000204 779 NSSTFITQD 787 (1861)
Q Consensus 779 ~sS~FiPqd 787 (1861)
+.-+|+|-+
T Consensus 573 gr~tflpl~ 581 (1164)
T TIGR02169 573 GRATFLPLN 581 (1164)
T ss_pred CCeeeccHh
Confidence 344566543
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=29.57 E-value=1.5e+03 Score=30.55 Aligned_cols=9 Identities=56% Similarity=0.962 Sum_probs=5.2
Q ss_pred ccccccccC
Q 000204 187 PSLQAALPA 195 (1861)
Q Consensus 187 psl~a~~p~ 195 (1861)
|++.+.||.
T Consensus 47 p~~~~~l~~ 55 (594)
T PF05667_consen 47 PSLGSSLPR 55 (594)
T ss_pred ccccCCCcc
Confidence 566555555
No 107
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=29.24 E-value=7.4e+02 Score=35.74 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=20.9
Q ss_pred ccCcccccccccCCCCCCCCCCCCCCC
Q 000204 423 MSSPFRDTVQDDSGRRDIDYGPGGRQP 449 (1861)
Q Consensus 423 v~Sp~R~~~~d~sg~RD~gyg~~ggQp 449 (1861)
|+.-.+++.+.+.|.++.-.|+||=.-
T Consensus 308 VSeeakdLI~~ll~~~e~RLgrngied 334 (1317)
T KOG0612|consen 308 VSEEAKDLIEALLCDREVRLGRNGIED 334 (1317)
T ss_pred cCHHHHHHHHHHhcChhhhcccccHHH
Confidence 566677777777889998889888544
No 108
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.94 E-value=2.4e+02 Score=36.73 Aligned_cols=12 Identities=42% Similarity=0.482 Sum_probs=5.2
Q ss_pred CCCCCCceeecc
Q 000204 375 EGREGNMWRASS 386 (1861)
Q Consensus 375 ~g~e~~~Wr~~s 386 (1861)
.||+|+.-.++-
T Consensus 351 ~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 351 AGREGNAIVFLN 362 (567)
T ss_pred ccCccceEEEec
Confidence 344444444443
No 109
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.87 E-value=1.8e+02 Score=36.88 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=9.6
Q ss_pred hhhhHHHHhhhhhhhcccC
Q 000204 545 AGLVGVVKKKKDVLKQTDF 563 (1861)
Q Consensus 545 ~~~~s~VKKKKEelKrae~ 563 (1861)
..+.+++++..+..-..+.
T Consensus 344 ~~~~Al~k~~eevksn~~l 362 (434)
T COG4499 344 LTLLALTKLYEEVKSNTDL 362 (434)
T ss_pred hHHHHHHHHHHHHhcccCC
Confidence 3445666665554433443
No 110
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=27.15 E-value=5.7e+02 Score=33.31 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=3.3
Q ss_pred cceeeccC
Q 000204 177 KASVLRGE 184 (1861)
Q Consensus 177 ~~~vlrge 184 (1861)
|-|-|||-
T Consensus 178 KmVd~rG~ 185 (641)
T KOG3915|consen 178 KMVDLRGA 185 (641)
T ss_pred eeeeecCc
Confidence 33444443
No 111
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.52 E-value=1.6e+03 Score=29.30 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCchhhhhHHH
Q 000204 531 DFGSSSFDGRDPFSAGLVGVV 551 (1861)
Q Consensus 531 DFg~S~fDgrDpf~~~~~s~V 551 (1861)
|--+++++..-|.+.+.+..+
T Consensus 124 ~i~~~qt~~d~PlC~eC~d~l 144 (447)
T KOG2751|consen 124 DILSSQTQVDHPLCEECMDVL 144 (447)
T ss_pred HHhhccCCcccchHHHHHHHH
Confidence 444555666666655554443
No 112
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.80 E-value=1e+03 Score=26.45 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000204 575 LERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEER 654 (1861)
Q Consensus 575 lERkrKeEEEERqRqEEEqRRrEEEaRREEEERERkEREEEEErRReEEErREReEeEEeEReEaERRAEEERkRrEEEe 654 (1861)
++.+...-.......++.+++.+.....-+.+....+++..+......++.+...++...+.++...+..+.....-+.+
T Consensus 35 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e 114 (161)
T COG0711 35 LDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAE 114 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHH
Q 000204 655 QRIIMEEERRKHAA 668 (1861)
Q Consensus 655 RRreEEEERRrEEE 668 (1861)
+.+..++-+....+
T Consensus 115 ~~~a~~~l~~~~~~ 128 (161)
T COG0711 115 KERALEELRAEVAE 128 (161)
T ss_pred HHHHHHHHHHHHHH
No 113
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.19 E-value=2.3e+03 Score=30.43 Aligned_cols=181 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HhhhhhhhcccCCCchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q 000204 552 KKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVA----------REQEEQRRRL 621 (1861)
Q Consensus 552 KKKKEelKrae~EdkrREelEeElERkrKeEEEERqRqEEEqRRrEEEaRREEEERERkE----------REEEEErRRe 621 (1861)
|.|-.++.+-.++-+.-++++.++-.++...+.+.++...++++..+...+-+++....+ ..+||+..-+
T Consensus 251 k~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL 330 (1243)
T KOG0971|consen 251 KAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL 330 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------------------------------------HHHHHHHHHHHHHHHHh
Q 000204 622 EEETREAVWRAEQEQLEAT--------------------------------------------RKAEEQRIAREEERQRI 657 (1861)
Q Consensus 622 EEErREReEeEEeEReEaE--------------------------------------------RRAEEERkRrEEEeRRr 657 (1861)
..|-....++-++....-+ .+..-++..++.|+++-
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s 410 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS 410 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcc--chhhcccCCcccCCCCchhHHHHHHhhhcC
Q 000204 658 IMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEKSS--GLAKERDLPKMADVGDWEDGERMVERITTS 732 (1861)
Q Consensus 658 eEEEERRrEEEEqKRkEEEEreKKRQaEkEKrrkEAEAkaeEKas--~IvkEKd~~K~re~dDweD~eRmvERItTS 732 (1861)
+.+|-++.++.-.++.+..+.....-.|+-..--=+++-...... ....++...-..++.|.++++.|.+.+..+
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Es 487 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQES 487 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 114
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=22.85 E-value=9.5e+02 Score=25.67 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000204 589 IIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAA 668 (1861)
Q Consensus 589 qEEEqRRrEEEaRREEEERERkEREEEEErRReEEErREReEeEEeEReEaERRAEEERkRrEEEeRRreEEEERRrEEE 668 (1861)
..+.+..-.......++.+...+...++-+.+..+.+.+..+..+..+.++++..++.....+++..+..++.+.....+
T Consensus 24 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e 103 (147)
T TIGR01144 24 IETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAE 103 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhhhccchhhc
Q 000204 669 KQKLLELEERIAKRQAEAAKSDSNSSDIADEKSSGLAKE 707 (1861)
Q Consensus 669 EqKRkEEEEreKKRQaEkEKrrkEAEAkaeEKas~IvkE 707 (1861)
+.+...+-......-+.....+........+....+++.
T Consensus 104 ~~~a~~~l~~~~~~lA~~~a~kll~~~l~~~~~~~lid~ 142 (147)
T TIGR01144 104 KEQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDK 142 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
No 115
>COG4907 Predicted membrane protein [Function unknown]
Probab=20.85 E-value=68 Score=40.97 Aligned_cols=26 Identities=54% Similarity=0.966 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCceEEeeccCcccccCCCccccCCCCCCCcccccccccCCCCCCCCCCCCCCCCC
Q 000204 41 GSNRARPTGGGGGGMLVLSRPRSSQKAAVPKLSVPPPLNLPSLRKEHERFDSSGSNGGPAGGGVSGA 107 (1861)
Q Consensus 41 ~~~~~~~~~g~~ggm~vlsr~r~~~~~~~~klsvp~plnlpslrkeh~~~d~~~~~~~~~~~~~~g~ 107 (1861)
++.+++.+|||+||- ||..||||||+
T Consensus 569 ~S~~~~~~GGG~G~~-----------------------------------------gGg~GGGGGGa 594 (595)
T COG4907 569 SSRRSSSSGGGGGFS-----------------------------------------GGGSGGGGGGA 594 (595)
T ss_pred ccccCCCCCCCCCcC-----------------------------------------CCCCCCCCCCC
No 116
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.85 E-value=2.8e+03 Score=30.44 Aligned_cols=8 Identities=50% Similarity=0.841 Sum_probs=3.8
Q ss_pred hhhccccc
Q 000204 1227 ELMDHLNA 1234 (1861)
Q Consensus 1227 ~~~~~~~a 1234 (1861)
|+|||+|-
T Consensus 1167 ElVDslDP 1174 (1293)
T KOG0996|consen 1167 ELVDSLDP 1174 (1293)
T ss_pred EeeccCCC
Confidence 44454444
No 117
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.78 E-value=2e+03 Score=28.77 Aligned_cols=7 Identities=43% Similarity=0.515 Sum_probs=3.1
Q ss_pred ccCCCCC
Q 000204 530 KDFGSSS 536 (1861)
Q Consensus 530 kDFg~S~ 536 (1861)
++||-+.
T Consensus 139 p~fg~~~ 145 (508)
T KOG0717|consen 139 PLFGYST 145 (508)
T ss_pred ccccCCC
Confidence 3455443
No 118
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=20.27 E-value=4.3e+02 Score=33.75 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.5
Q ss_pred cccccc
Q 000204 474 QYNRFR 479 (1861)
Q Consensus 474 qynr~r 479 (1861)
||-+|.
T Consensus 173 ~YIryt 178 (506)
T KOG2441|consen 173 QYIRYT 178 (506)
T ss_pred ceeeec
Confidence 344443
No 119
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.22 E-value=8.5e+02 Score=31.51 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCcccc-CCCCCCCCcccccCCCCCCCCCCCchhhhhHHHHhhhhhhhcccCCCchhhhHHHHHHHHHhHHHHHHHHHH
Q 000204 512 DKRPLLK-REEPYQDDPFMKDFGSSSFDGRDPFSAGLVGVVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRII 590 (1861)
Q Consensus 512 EkRll~K-sEKpy~EDpfmkDFg~S~fDgrDpf~~~~~s~VKKKKEelKrae~EdkrREelEeElERkrKeEEEERqRqE 590 (1861)
|++.+.+ +++|-+.-+.+.|.--....+.|.. +.++..-..++ .|++|.+..-...++...
T Consensus 216 ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a-----~~~~~hi~~l~-------------~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 216 EKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEA-----AAEKLHIDKLQ-------------AEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHhcCcccCCCchhhhhcCccccCchH-----HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000204 591 EEQERALELARREEEERLRVAREQEEQRRRLEEETREAVWRAEQEQLEATR 641 (1861)
Q Consensus 591 EEqRRrEEEaRREEEERERkEREEEEErRReEEErREReEeEEeEReEaER 641 (1861)
++..+-++|++-.++|.+|.+++...+-.|.|.--+.-.+.+.-...-+++
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeer 328 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEER 328 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
No 120
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.15 E-value=44 Score=35.08 Aligned_cols=7 Identities=71% Similarity=1.275 Sum_probs=6.8
Q ss_pred CCCCcee
Q 000204 1674 DEDDFIE 1680 (1861)
Q Consensus 1674 d~d~fie 1680 (1861)
|||||||
T Consensus 83 DDDGFIE 89 (102)
T PF15176_consen 83 DDDGFIE 89 (102)
T ss_pred CCCcccc
Confidence 9999999
No 121
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=20.08 E-value=36 Score=41.97 Aligned_cols=42 Identities=33% Similarity=0.553 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccC
Q 000204 92 SSGSNGGPAGGGVSGAGQRPGSSGTGWTKPGTAVGSDQKIND 133 (1861)
Q Consensus 92 ~~~~~~~~~~~~~~g~g~~p~~sg~gw~kp~~~~~~~~~~~~ 133 (1861)
.-+++|||-|+-|+++-.-|+..|.-|..|+.+..++.+.++
T Consensus 13 ~p~~~~~~dg~e~~~~~~~ps~~~~~~~~~~~p~~~d~~~~~ 54 (489)
T PF07415_consen 13 PPSPHGGPDGYEGSNNSQYPSSFGSSWNSPGPPNYEDYPSNS 54 (489)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCcccCCCCC
Confidence 345677888898999999999999999999998888887764
Done!