Query 000204
Match_columns 1861
No_of_seqs 441 out of 1579
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 01:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 87.6 3.8 0.00013 59.7 15.1 8 1205-1212 2685-2692(3245)
2 3vkg_A Dynein heavy chain, cyt 83.9 13 0.00044 54.6 17.4 13 547-559 1904-1916(3245)
3 3h8d_A Myosin-VI; myosin VI, m 80.6 0.23 7.9E-06 51.4 -1.1 27 839-865 34-60 (141)
4 2zuo_A MVP, major vault protei 78.1 99 0.0034 40.5 20.5 12 150-161 146-157 (861)
5 2dfs_A Myosin-5A; myosin-V, in 74.2 20 0.00067 47.8 13.6 20 154-173 241-260 (1080)
6 2zuo_A MVP, major vault protei 73.9 1.1E+02 0.0036 40.2 19.2 12 150-161 199-210 (861)
7 3oja_A Leucine-rich immune mol 73.0 62 0.0021 38.5 16.3 8 570-577 325-332 (487)
8 2b5u_A Colicin E3; high resolu 71.4 1.5E+02 0.005 36.9 18.7 7 504-510 269-275 (551)
9 2dfs_A Myosin-5A; myosin-V, in 69.7 94 0.0032 41.6 18.3 13 251-263 435-447 (1080)
10 1f5n_A Interferon-induced guan 68.3 60 0.0021 40.7 15.3 7 56-62 42-48 (592)
11 2pk2_A Cyclin-T1, protein TAT; 67.6 1.1 3.8E-05 52.4 0.0 14 42-55 291-304 (358)
12 1i84_S Smooth muscle myosin he 62.9 22 0.00076 47.5 10.7 20 154-173 268-287 (1184)
13 1i84_S Smooth muscle myosin he 62.5 9.9 0.00034 50.8 7.3 20 174-193 382-401 (1184)
14 2pk2_A Cyclin-T1, protein TAT; 38.5 6.6 0.00022 46.0 0.0 10 45-54 297-306 (358)
15 2b5u_A Colicin E3; high resolu 31.2 8.9E+02 0.03 30.4 18.5 13 529-543 271-283 (551)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.59 E-value=3.8 Score=59.69 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=5.5
Q ss_pred hhHHHHHh
Q 000204 1205 ETDKAIQD 1212 (1861)
Q Consensus 1205 e~ek~~q~ 1212 (1861)
-||++|..
T Consensus 2685 ~A~~~i~~ 2692 (3245)
T 3vkg_A 2685 LAEKSIYA 2692 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47777765
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=83.89 E-value=13 Score=54.57 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=6.1
Q ss_pred hhHHHHhhhhhhh
Q 000204 547 LVGVVKKKKDVLK 559 (1861)
Q Consensus 547 ~~s~VKKKKEelK 559 (1861)
+..++.+|+.++.
T Consensus 1904 y~~ll~~K~~el~ 1916 (3245)
T 3vkg_A 1904 VVLLINEKRDQLE 1916 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555443
No 3
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=80.62 E-value=0.23 Score=51.38 Aligned_cols=27 Identities=22% Similarity=0.376 Sum_probs=24.0
Q ss_pred ccCCcccccCCCCcccccccccccccc
Q 000204 839 SRGQRWNMSGDGDHYGRNIEMESDFHE 865 (1861)
Q Consensus 839 ~~p~~W~ApgDGd~~gRq~eIdSdq~E 865 (1861)
.+..+|++||||.||.|||++|++...
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K~P 60 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDKPP 60 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSSCC
T ss_pred cccceEEEeeCChhhheeeeeCCCCCC
Confidence 578999999999999999999987643
No 4
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=78.12 E-value=99 Score=40.47 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=7.3
Q ss_pred CCcccccCCCCC
Q 000204 150 DGVGVYVPPSVR 161 (1861)
Q Consensus 150 ~~~~~~~~~s~~ 161 (1861)
.++|.|.|..--
T Consensus 146 ~gPGtY~P~veE 157 (861)
T 2zuo_A 146 EGPGTYIPQKEV 157 (861)
T ss_dssp CSSCCCCSSSCC
T ss_pred ECCceecCCCce
Confidence 566777776433
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.25 E-value=20 Score=47.84 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=11.0
Q ss_pred cccCCCCCcCCCCCCCCCCC
Q 000204 154 VYVPPSVRSGTVGPALSSFA 173 (1861)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (1861)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 35555555555555666665
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=73.87 E-value=1.1e+02 Score=40.18 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=7.0
Q ss_pred CCcccccCCCCC
Q 000204 150 DGVGVYVPPSVR 161 (1861)
Q Consensus 150 ~~~~~~~~~s~~ 161 (1861)
++.|.|+|..--
T Consensus 199 t~~gayiP~v~E 210 (861)
T 2zuo_A 199 RSVGAYLPAVFE 210 (861)
T ss_dssp CSSSCCCCTTCC
T ss_pred eccceecCCCce
Confidence 346667666554
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.02 E-value=62 Score=38.50 Aligned_cols=8 Identities=38% Similarity=0.301 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q 000204 570 SFEAELER 577 (1861)
Q Consensus 570 elEeElER 577 (1861)
+++.|++.
T Consensus 325 eF~~Eve~ 332 (487)
T 3oja_A 325 TERLECER 332 (487)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 8
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=71.39 E-value=1.5e+02 Score=36.91 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.1
Q ss_pred CCCCCCc
Q 000204 504 DPMHNFS 510 (1861)
Q Consensus 504 DP~~nFg 510 (1861)
|=+++|.
T Consensus 269 DAII~FP 275 (551)
T 2b5u_A 269 DAVIRFP 275 (551)
T ss_dssp EEEEECC
T ss_pred ceEEECC
Confidence 3344444
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.72 E-value=94 Score=41.62 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=8.2
Q ss_pred ccccCCCCCCCCC
Q 000204 251 RLRENGGINHDTG 263 (1861)
Q Consensus 251 ~~~~~~~~~~~~g 263 (1861)
.|+-.|-+.|..+
T Consensus 435 vLDI~GFE~f~~N 447 (1080)
T 2dfs_A 435 VLDIYGFETFEIN 447 (1080)
T ss_dssp EEEECCCCCCSSB
T ss_pred eeccCCccccCcC
Confidence 4466777777655
No 10
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.29 E-value=60 Score=40.73 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.4
Q ss_pred EEeeccC
Q 000204 56 LVLSRPR 62 (1861)
Q Consensus 56 ~vlsr~r 62 (1861)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3455554
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=67.63 E-value=1.1 Score=52.45 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000204 42 SNRARPTGGGGGGM 55 (1861)
Q Consensus 42 ~~~~~~~~g~~ggm 55 (1861)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444555554
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.88 E-value=22 Score=47.51 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=12.0
Q ss_pred cccCCCCCcCCCCCCCCCCC
Q 000204 154 VYVPPSVRSGTVGPALSSFA 173 (1861)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (1861)
.|+---.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 45555556555566666666
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.48 E-value=9.9 Score=50.77 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=12.1
Q ss_pred ccccceeeccCCCccccccc
Q 000204 174 PAEKASVLRGEDFPSLQAAL 193 (1861)
Q Consensus 174 ~~e~~~vlrgedfpsl~a~~ 193 (1861)
.+++|+-|=|=|.-.|..+|
T Consensus 382 ~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 382 AAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHh
Confidence 45666666666655555555
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=38.53 E-value=6.6 Score=46.04 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=0.0
Q ss_pred CCCCCCCCCc
Q 000204 45 ARPTGGGGGG 54 (1861)
Q Consensus 45 ~~~~~g~~gg 54 (1861)
||+|+||+||
T Consensus 297 ~~~~~~~~~~ 306 (358)
T 2pk2_A 297 GGGTSGGVPG 306 (358)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
Confidence 3333444333
No 15
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.15 E-value=8.9e+02 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=6.7
Q ss_pred cccCCCCCCCCCCCc
Q 000204 529 MKDFGSSSFDGRDPF 543 (1861)
Q Consensus 529 mkDFg~S~fDgrDpf 543 (1861)
..+|+. ..+++|.
T Consensus 271 II~FPe--~Sg~ePl 283 (551)
T 2b5u_A 271 VIRFPK--DSGHNAV 283 (551)
T ss_dssp EEECCG--GGCCCCE
T ss_pred EEECCC--CCCCCce
Confidence 456665 2245555
Done!