Query 000204
Match_columns 1861
No_of_seqs 441 out of 1579
Neff 3.4
Searched_HMMs 13730
Date Tue Mar 26 01:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000204.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000204hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2es4d1 a.137.15.1 (D:53-332) 47.0 19 0.0014 37.3 7.9 7 327-333 2-8 (280)
2 d1k47a2 d.58.26.4 (A:195-329) 12.6 37 0.0027 31.9 1.8 15 47-61 97-111 (135)
3 d1kvka2 d.58.26.3 (A:226-394) 3.9 1.7E+02 0.012 28.4 1.8 15 48-62 108-122 (169)
4 d1v1ha1 b.83.1.1 (A:319-392) A 3.0 2.4E+02 0.017 25.0 1.7 21 1808-1828 42-62 (74)
5 d1p9ka_ d.66.1.6 (A:) Hypothet 2.4 1.8E+02 0.013 25.3 0.1 42 1642-1685 27-74 (79)
6 d1aqta2 b.93.1.1 (A:2-86) Epsi 2.2 2.9E+02 0.021 24.0 1.3 28 1654-1681 42-70 (85)
7 d1uala_ c.116.1.4 (A:) tRNA(m1 2.0 2.9E+02 0.021 29.0 1.1 8 50-57 57-64 (252)
8 d1v9da_ a.207.1.1 (A:) Diaphan 1.8 1.2E+03 0.087 23.9 5.9 35 575-609 297-331 (332)
9 d1j20a2 d.210.1.1 (A:171-395) 1.8 3.3E+02 0.024 28.1 1.1 38 1108-1146 5-58 (225)
10 d1m7va_ d.174.1.1 (A:) Nitric 1.8 4.2E+02 0.031 29.1 2.0 53 1097-1149 135-190 (363)
No 1
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=46.95 E-value=19 Score=37.26 Aligned_cols=7 Identities=57% Similarity=1.227 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 000204 327 PRPSVLP 333 (1861)
Q Consensus 327 ~~~~~~p 333 (1861)
|-|..||
T Consensus 2 ~~~~~~p 8 (280)
T d2es4d1 2 PLPAALP 8 (280)
T ss_dssp CCSCSSC
T ss_pred CCCcCCC
Confidence 4444444
No 2
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=12.56 E-value=37 Score=31.92 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=10.7
Q ss_pred CCCCCCCceEEeecc
Q 000204 47 PTGGGGGGMLVLSRP 61 (1861)
Q Consensus 47 ~~~g~~ggm~vlsr~ 61 (1861)
.|+||||+|++|..+
T Consensus 97 ~GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 97 SGAGGGDCGIALSFD 111 (135)
T ss_dssp CSSCSSSEEEEEECS
T ss_pred ccCcCCCeEEEEecC
Confidence 445567888888864
No 3
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.92 E-value=1.7e+02 Score=28.37 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.3
Q ss_pred CCCCCCceEEeeccC
Q 000204 48 TGGGGGGMLVLSRPR 62 (1861)
Q Consensus 48 ~~g~~ggm~vlsr~r 62 (1861)
|+||||-|++|.++-
T Consensus 108 GAGgGGc~ial~~~~ 122 (169)
T d1kvka2 108 GAGGGGCGITLLKPG 122 (169)
T ss_dssp SSCSSSEEEEEECTT
T ss_pred CCCCCCeEEEEeccc
Confidence 344577788888874
No 4
>d1v1ha1 b.83.1.1 (A:319-392) Adenovirus {Human adenovirus type 2 [TaxId: 10515]}
Probab=3.02 E-value=2.4e+02 Score=24.95 Aligned_cols=21 Identities=10% Similarity=0.415 Sum_probs=15.7
Q ss_pred CcccceeeccCcccccccccc
Q 000204 1808 NLASGFIFDSENKIMDNVQTS 1828 (1861)
Q Consensus 1808 ~~~~g~~~~~~~~~~~~~~~~ 1828 (1861)
||.+||.||.|+.|.--.-+.
T Consensus 42 KlG~GL~fdsngaiv~klgtg 62 (74)
T d1v1ha1 42 KIGSGIDYNENGAMITKLGAG 62 (74)
T ss_dssp CBCTTEEECTTSCEEECBCTT
T ss_pred EecccceecCCCCEeecccCC
Confidence 888999999888776554443
No 5
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=2.35 E-value=1.8e+02 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred cc-cccC-CccccccccccceeEE----eecCCcccCCCCCCceeeechh
Q 000204 1642 LK-RTIR-SEDDVDASLQSGVVRV----FEQPGIEAPSDEDDFIEVRSKR 1685 (1861)
Q Consensus 1642 ~~-~~~~-~~~dv~a~lq~g~vrv----~~q~gie~p~d~d~fievrskr 1685 (1861)
|+ .|+| |..+++.-+.+|-|+| ...||-.+..+ |-|+|.-|+
T Consensus 27 L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~--d~I~vdG~~ 74 (79)
T d1p9ka_ 27 LKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAG--QTVSFAGHS 74 (79)
T ss_dssp HHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSS--EEEEETTEE
T ss_pred HHHCCCccCHHHHHHHHHhCCcccCCEEeccccccCCCC--CEEEECCEE
No 6
>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.24 E-value=2.9e+02 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=0.0
Q ss_pred cccccceeEEeecCCcccC-CCCCCceee
Q 000204 1654 ASLQSGVVRVFEQPGIEAP-SDEDDFIEV 1681 (1861)
Q Consensus 1654 a~lq~g~vrv~~q~gie~p-~d~d~fiev 1681 (1861)
+.|..|++|+..+.|-+-. .=.+||+||
T Consensus 42 ~~L~~g~v~i~~~~~~~~~~~v~gG~~~v 70 (85)
T d1aqta2 42 TAIKPGMIRIVKQHGHEEFIYLSGGILEV 70 (85)
T ss_dssp EEECSEEEEEEETTTEEEEEEESSEEEEE
T ss_pred EEecCCEEEEEECCCCEEEEEEcccEEEE
No 7
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=1.99 E-value=2.9e+02 Score=29.04 Aligned_cols=8 Identities=75% Similarity=1.444 Sum_probs=0.0
Q ss_pred CCCCceEE
Q 000204 50 GGGGGMLV 57 (1861)
Q Consensus 50 g~~ggm~v 57 (1861)
|||-||||
T Consensus 57 GGGpGMVm 64 (252)
T d1uala_ 57 GGGPGMLM 64 (252)
T ss_dssp TCCSCCEE
T ss_pred CCCCccee
No 8
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.85 E-value=1.2e+03 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000204 575 LERVQKMQEQERQRIIEEQERALELARREEEERLR 609 (1861)
Q Consensus 575 lERkrKeEEEERqRqEEEqRRrEEEaRREEEERER 609 (1861)
...-.+..++.++|++++++.++.+..+++.+++|
T Consensus 297 ~~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 9
>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.84 E-value=3.3e+02 Score=28.13 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=0.0
Q ss_pred Ccccccchhcccccccc----------------cCCCCcccceeeecccceeccC
Q 000204 1108 DENIELTQEFEGIHLEE----------------KGSPHMMSNLVLGFNEGVEVPM 1146 (1861)
Q Consensus 1108 den~~l~~~~~~~hl~~----------------k~~~~~~~~~vlgf~egv~v~m 1146 (1861)
|||| +.-.+|..-||+ ...|+.-+.|.|+|..|+=|.+
T Consensus 5 D~Nl-~~~S~Egg~Ledp~~~ppe~~~~~t~~p~~ap~~pe~v~I~F~~G~Pv~i 58 (225)
T d1j20a2 5 DANL-LHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAV 58 (225)
T ss_dssp EECS-SCEEEESGGGGCTTSCCCTTCCSSSCCGGGSCSSCEEEEEEEETTEEEEE
T ss_pred ccch-hhhhhccchhcCCCCCCChhHHhccCCHHHCCCCCEEEEEEEeeeEEEEE
No 10
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.82 E-value=4.2e+02 Score=29.11 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCccccCCCCCCcccccchhcccccccccCCCCcccceeeecc-cc--eeccCCCc
Q 000204 1097 GYQEEDVPEGDDENIELTQEFEGIHLEEKGSPHMMSNLVLGFN-EG--VEVPMPND 1149 (1861)
Q Consensus 1097 ~y~~ed~~~~~den~~l~~~~~~~hl~~k~~~~~~~~~vlgf~-eg--v~v~mp~d 1149 (1861)
||+.+..|-++--|++||+..+.+--.-|+++--+=+|||=.| +. +-.++|.|
T Consensus 135 GY~~dg~iiGDP~~vefT~~c~~lGW~~~~t~FDvLPlviq~~g~~~P~~feiP~~ 190 (363)
T d1m7va_ 135 GYESDGERIGDPASRSLTAACEQLGWRGERTDFDLLPLIFRMRGDEQPVWYELPRS 190 (363)
T ss_dssp EEC--CCCEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEEETTCSSCEEECCCTT
T ss_pred CcCCCCCccCCcchHHHHHHHHHcCCCCCCCCCCeeeEEEEeCCCCCCeeecCCHH
Done!