BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000205
         (1860 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
            Ocrl
          Length = 366

 Score = 33.9 bits (76), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 1478 DSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHL 1532
            DSAY   I R+   Q    H N F  L++FL EL     + ++  N+ ATL   L
Sbjct: 278  DSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSL 332


>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
            The Endocytic Pathway
          Length = 342

 Score = 33.9 bits (76), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%)

Query: 1478 DSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHL 1532
            DSAY   I R+   Q    H N F  L++FL EL     + ++  N+ ATL   L
Sbjct: 254  DSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSL 308


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,349,321
Number of Sequences: 62578
Number of extensions: 1874532
Number of successful extensions: 3850
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3848
Number of HSP's gapped (non-prelim): 3
length of query: 1860
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1747
effective length of database: 7,902,023
effective search space: 13804834181
effective search space used: 13804834181
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)