BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000205
(1860 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2AKG8|FOCAD_MOUSE Focadhesin OS=Mus musculus GN=Focad PE=2 SV=1
Length = 1798
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 104/442 (23%), Positives = 174/442 (39%), Gaps = 62/442 (14%)
Query: 530 VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPV 589
VP L+ +L + + D V N + L LP++ V + +++ I + P
Sbjct: 486 VPNLIPVLMF-KLGRPLDPVSYNHI---LYTLPTLGVHKVCVGQILRVIQLL---GTTPR 538
Query: 590 LYATATRLLCQTWEINDRAFGSLQGVL----QPKLLIDFKSERNICISIAASIHDVCRKD 645
L A RLL WE DR + LQ + P L + + + I+ AASI D+C++
Sbjct: 539 LRAVTLRLLTSLWEKQDRVYPELQRFMAVSDAPSLSVGKELQWEKLIAKAASIRDICKQR 598
Query: 646 P-DRGVDLILSVAA----CIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY 700
P G D++ +++ C + AL LQ L LC+A+V+ + W+ ++ L
Sbjct: 599 PYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPK-LSC 657
Query: 701 SLDPMLAQSLCILLRWG---AMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASA 757
+ P++ ++L L ++ Y VL LW T T A S
Sbjct: 658 DMRPLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLW-THTQNKNPTVASAAYKSLSH 716
Query: 758 FEALTQYEVSHIDKNI-----------------LDFKQRSFEILISETNPVVLRAMEGFQ 800
F A ++ + H+ + I L F L++ T P VL A+E F
Sbjct: 717 FSA-GEHTILHLPEKIRPEMPVPGELDEEESVDLSIPGACFLRLLTITAPSVLPALEEFF 775
Query: 801 VKIITHEHSNRRRFVKEKKVPG---SKIEKLLDIFPRVI---FSSDKKIYARE-LPGAAL 853
++ E N R + + G S K + P I + ++K+ + L G L
Sbjct: 776 TSLVRQEMVNMPRGIYHSALKGGVRSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGML 835
Query: 854 LCLSFTR------KDLRNQGEARGL---QNVLSGYENALIDIAASFQLSRNIFVALLSLQ 904
C K L +RG Q L+ + ++ + R IF+ Q
Sbjct: 836 FCYDLAMYQSKDGKPLNRLMASRGRSFKQTTLALIHEVHVQLS---EWHRAIFLP----Q 888
Query: 905 SWKFFMQRWVRAIIMSIDAKAE 926
+W +M R AI+ A+ E
Sbjct: 889 AWLAYMTRAYHAILQGRIAELE 910
>sp|Q5VW36|FOCAD_HUMAN Focadhesin OS=Homo sapiens GN=FOCAD PE=1 SV=1
Length = 1801
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 163/413 (39%), Gaps = 67/413 (16%)
Query: 557 LLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVL 616
+L LP + V I +++ I + P L A RLL WE DR + LQ +
Sbjct: 509 ILYTLPKLGVHKVCIGQILRIIQLL---GTTPRLRAVTLRLLTSLWEKQDRVYPELQRFM 565
Query: 617 Q----PKLLIDFKSERNICISIAASIHDVCRKDP-DRGVDLILSVAA----CIESRDPII 667
P L + + + I+ AASI D+C++ P G D++ +++ C +
Sbjct: 566 AVSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATP 625
Query: 668 QALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWG---AMDAEAY 724
AL LQ L LC+A+V+ + W+ ++ L P++ ++L L ++ Y
Sbjct: 626 AALVLQGLHALCQAEVVCIRSTWNALSPK-LSCDTRPLILKTLSELFSLVPSLTVNTTEY 684
Query: 725 SEASRTVLKILWDTGTTTHLGHE---LQWAKARASAFEALTQYEVSHIDKNI-------- 773
VL LW TH ++ + A R+ A ++ + H+ + I
Sbjct: 685 ENFKVQVLSFLW-----THTQNKDPIVANAAYRSLANFTAGEHTILHLPEKIRPEIPIPE 739
Query: 774 ------------LDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVP 821
L + L+S T P+VL A+E F ++ E N R + +
Sbjct: 740 ELDDDEDVEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTSLVKQEMVNMPRGIYHSALK 799
Query: 822 G---SKIEKLLDIFPRVI---FSSDKKIYARE-LPGAALLCLSFTR------KDLRNQGE 868
G S K + P I + ++K+ + L G L C + K L
Sbjct: 800 GGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDVSMYQSKDGKPLNRLMA 859
Query: 869 ARGL---QNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAII 918
+RG Q L+ I ++ + R IF+ Q+W +M R AI+
Sbjct: 860 SRGRSFKQTSLALVHEVHIQLS---EWHRAIFLP----QAWLAYMNRAYHAIL 905
>sp|Q68X51|LPXB_RICTY Lipid-A-disaccharide synthase OS=Rickettsia typhi (strain ATCC VR-144
/ Wilmington) GN=lpxB PE=3 SV=1
Length = 380
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 1718 GVRRQWLVDTIE-ISCVSCYPSTALQFVGLLSGSCCRYMPFLILDSSTVLND---LPVTL 1773
+R+++ +D E I CV+ G G R++P I + D L +
Sbjct: 176 ALRKEFKIDDNESILCVT---------FGTRKGEILRHLPIFITAIQKISKDYKNLRIIF 226
Query: 1774 PSLLSKPGWETVAEPFM-----SYLWASTERIYNWVVTDVTSSQSSPSTQPIDESENDM 1827
P L P E + +PF+ +YL+ S+ER+ + V+D+ ++S +T I S M
Sbjct: 227 P--LVHPDHEAIIKPFLENVQFNYLFLSSERLKAYAVSDLALAKSGTNTLEISASGTPM 283
>sp|Q9ZDK7|LPXB_RICPR Lipid-A-disaccharide synthase OS=Rickettsia prowazekii (strain Madrid
E) GN=lpxB PE=3 SV=1
Length = 380
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 1718 GVRRQWLVDTIE-ISCVSCYPSTALQFVGLLSGSCCRYMPFLI---LDSSTVLNDLPVTL 1773
+R++ +D E I CV+ +G G R++P I + S +L +
Sbjct: 176 ALRKELKIDENERILCVT---------LGTRKGEILRHLPIFIDAIQEISKDYKNLTIIF 226
Query: 1774 PSLLSKPGWETVAEPFM-----SYLWASTERIYNWVVTDVTSSQSSPSTQPIDESENDM 1827
P L+ P E + +PF+ +YL+ S ER+ + V+D+ ++S +T I S M
Sbjct: 227 P--LAHPDHEAIIKPFLDNIQFNYLFLSNERLKAYAVSDLALAKSGTNTLEISASGTPM 283
>sp|Q01968|OCRL_HUMAN Inositol polyphosphate 5-phosphatase OCRL-1 OS=Homo sapiens GN=OCRL
PE=1 SV=3
Length = 901
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 1478 DSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHL 1532
DSAY I R+ Q H N F L++FL EL + ++ N+ ATL L
Sbjct: 813 DSAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSL 867
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 654,226,626
Number of Sequences: 539616
Number of extensions: 26745980
Number of successful extensions: 62263
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 62250
Number of HSP's gapped (non-prelim): 15
length of query: 1860
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1728
effective length of database: 120,340,147
effective search space: 207947774016
effective search space used: 207947774016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)