Query 000205
Match_columns 1860
No_of_seqs 86 out of 88
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 23:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11229 DUF3028: Protein of u 100.0 3.3E-78 7.2E-83 705.6 28.8 489 1224-1798 1-550 (589)
2 PF12530 DUF3730: Protein of u 100.0 3.5E-40 7.5E-45 366.8 20.7 223 533-761 1-234 (234)
3 PF12530 DUF3730: Protein of u 98.8 1.3E-08 2.8E-13 114.9 11.6 224 82-367 2-234 (234)
4 KOG2171 Karyopherin (importin) 94.7 7.5 0.00016 53.3 26.1 91 511-605 97-190 (1075)
5 PRK09687 putative lyase; Provi 94.1 1.2 2.6E-05 52.8 15.8 183 549-765 35-220 (280)
6 PF01602 Adaptin_N: Adaptin N 93.3 1 2.3E-05 56.0 14.2 198 550-765 55-259 (526)
7 PF10508 Proteasom_PSMB: Prote 92.7 5.6 0.00012 50.9 19.4 224 493-765 75-318 (503)
8 PRK13800 putative oxidoreducta 91.4 11 0.00024 51.5 21.0 165 511-717 638-802 (897)
9 PTZ00429 beta-adaptin; Provisi 90.4 13 0.00028 50.0 19.8 199 550-765 81-284 (746)
10 PRK13800 putative oxidoreducta 89.7 13 0.00028 50.8 19.5 242 494-800 651-894 (897)
11 KOG0212 Uncharacterized conser 87.8 32 0.0007 44.8 19.4 217 132-389 13-235 (675)
12 PRK09687 putative lyase; Provi 86.0 56 0.0012 39.2 19.5 182 548-766 65-250 (280)
13 PF01602 Adaptin_N: Adaptin N 86.0 8.8 0.00019 48.0 13.6 234 549-807 91-335 (526)
14 PF10508 Proteasom_PSMB: Prote 85.0 54 0.0012 42.3 19.9 256 497-765 120-422 (503)
15 PLN03200 cellulose synthase-in 83.6 3E+02 0.0064 41.8 30.8 165 3-176 531-706 (2102)
16 cd00020 ARM Armadillo/beta-cat 79.6 10 0.00022 37.2 8.6 99 570-680 8-120 (120)
17 PTZ00429 beta-adaptin; Provisi 76.1 68 0.0015 43.6 17.1 198 12-231 150-388 (746)
18 PLN03200 cellulose synthase-in 64.6 8.1E+02 0.017 37.7 34.5 116 554-681 380-518 (2102)
19 PF13646 HEAT_2: HEAT repeats; 63.7 19 0.00042 34.2 6.2 84 944-1048 4-88 (88)
20 KOG1241 Karyopherin (importin) 59.3 67 0.0014 43.3 11.5 180 530-763 317-527 (859)
21 PF12348 CLASP_N: CLASP N term 55.6 98 0.0021 35.0 11.0 92 585-680 105-206 (228)
22 PF13646 HEAT_2: HEAT repeats; 54.5 44 0.00096 31.8 6.9 84 6-105 3-88 (88)
23 PF12717 Cnd1: non-SMC mitotic 53.1 91 0.002 34.7 10.0 105 629-735 3-110 (178)
24 PF03378 CAS_CSE1: CAS/CSE pro 45.9 5.6E+02 0.012 33.1 16.4 237 493-741 24-304 (435)
25 PF12348 CLASP_N: CLASP N term 45.4 1.4E+02 0.0031 33.7 10.2 107 648-764 91-204 (228)
26 cd00020 ARM Armadillo/beta-cat 41.0 48 0.001 32.5 5.1 91 4-95 9-106 (120)
27 PF12719 Cnd3: Nuclear condens 38.8 7.5E+02 0.016 29.8 15.3 112 627-738 77-205 (298)
28 KOG2062 26S proteasome regulat 37.9 17 0.00038 48.2 1.8 67 979-1053 553-619 (929)
29 KOG1242 Protein containing ada 37.8 2.2E+02 0.0047 37.9 11.2 221 509-743 310-548 (569)
30 COG5096 Vesicle coat complex, 37.7 6E+02 0.013 35.2 15.4 94 585-685 103-200 (757)
31 PF12830 Nipped-B_C: Sister ch 37.3 4.8E+02 0.01 29.6 12.7 155 46-228 11-176 (187)
32 PF05004 IFRD: Interferon-rela 35.7 5.7E+02 0.012 31.4 13.8 171 630-810 59-260 (309)
33 KOG2023 Nuclear transport rece 35.4 4.6E+02 0.0099 35.7 13.3 235 511-765 232-504 (885)
34 KOG1059 Vesicle coat complex A 35.0 53 0.0012 44.0 5.3 146 511-681 198-366 (877)
35 KOG1517 Guanine nucleotide bin 34.1 1.8E+02 0.0038 41.0 9.7 170 568-765 471-670 (1387)
36 PF05918 API5: Apoptosis inhib 33.8 4.9E+02 0.011 34.8 13.4 151 41-222 57-207 (556)
37 PF11864 DUF3384: Domain of un 30.8 1.3E+03 0.028 29.9 18.4 208 497-714 29-259 (464)
38 KOG1061 Vesicle coat complex A 27.4 1.9E+02 0.0042 39.2 8.5 146 6-157 125-313 (734)
39 PF09450 DUF2019: Domain of un 25.4 33 0.00072 36.2 1.1 41 23-70 34-74 (106)
40 PF07571 DUF1546: Protein of u 24.0 86 0.0019 32.0 3.6 35 1273-1308 42-78 (92)
41 PF13513 HEAT_EZ: HEAT-like re 23.8 2.9E+02 0.0063 24.7 6.6 53 704-763 1-54 (55)
42 KOG0915 Uncharacterized conser 23.7 4E+02 0.0087 39.1 10.6 182 635-838 939-1137(1702)
43 KOG1062 Vesicle coat complex A 22.8 7.2E+02 0.016 34.6 12.2 133 503-641 149-304 (866)
44 KOG2274 Predicted importin 9 [ 22.5 1.1E+03 0.023 33.5 13.7 195 548-766 461-669 (1005)
45 KOG1060 Vesicle coat complex A 22.5 1.8E+02 0.004 39.7 6.9 118 575-715 110-227 (968)
46 PF05918 API5: Apoptosis inhib 21.9 4.2E+02 0.0091 35.4 9.9 145 586-737 34-188 (556)
47 PF00514 Arm: Armadillo/beta-c 21.7 95 0.0021 26.5 3.0 28 1347-1379 12-39 (41)
48 PF13513 HEAT_EZ: HEAT-like re 20.5 1E+02 0.0022 27.6 3.0 51 628-678 1-55 (55)
49 KOG2062 26S proteasome regulat 20.0 1.3E+02 0.0028 40.8 4.9 101 937-1052 376-478 (929)
No 1
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=100.00 E-value=3.3e-78 Score=705.61 Aligned_cols=489 Identities=20% Similarity=0.318 Sum_probs=466.1
Q ss_pred HHhHHHHHHHHhhccccchhhHHHHHHHhhccCchhHHHhhcccccc------chhhHH-HHH-HHHHhhhcCCCCchhh
Q 000205 1224 VHGYRELISELLSVNKSGNFHKSLLMASCVGAGSLLACIFNEGAHSL------NVDYVN-AFL-ELFRKCYSNPYPPIIH 1295 (1860)
Q Consensus 1224 ~~~~~~l~~~l~~~~ksg~~~~~l~~a~cigag~~~~~il~~gvh~~------~~e~v~-~ll-~~~~~~yt~~~p~~~~ 1295 (1860)
||++|.|+++ |+++||| |++ |++.|||+ |+||+. +|| .|+|++.+++.|+|.|
T Consensus 1 mnklr~l~e~--~qqt~gf-------ala----------lg~~vhgls~cghgkaedl~~~ll~~w~ki~laeg~ptm~~ 61 (589)
T PF11229_consen 1 MNKLRALTEN--NQQTSGF-------ALA----------LGNIVHGLSVCGHGKAEDLGNRLLPAWIKIVLAEGCPTMQR 61 (589)
T ss_pred CcHHHHHHHh--CCCCchH-------HHH----------HHHHHhhhhhcCCcchhhhhhhHHHHHHHHHHhcCCcHHHH
Confidence 6899999999 9999999 888 99999999 999999 888 9999999999999999
Q ss_pred hhhhhhHHHhhccccccccccCCCCccccccccccCCCccccccccCcccchhhHHHHHHHHHHHccCcchhhhhhHHHH
Q 000205 1296 LGGMLGVVNALGAGAGYLIHVDPLNSSMRAGYAQKEHPYTLGPLFSDPVCEQHVTSLMQEMFLVAQTSDDHQLQQYAAWA 1375 (1860)
Q Consensus 1296 lg~m~g~vna~ga~~g~l~~~~~~~~~~~~~~~~~ess~~~gpl~~~~~~~~~~~~~~qeifl~a~~s~~~~~q~~a~w~ 1375 (1860)
|++..|+|..+|+ +|+++|++ +|.+++|+++|.| ++++|++.|-| ..|+++++|.||+|+
T Consensus 62 laa~~GlvaLvgs-e~~~iQlk---------se~~~ss~~q~~l------nevir~ltqvi----s~sg~iglQsn~~wl 121 (589)
T PF11229_consen 62 LAALNGLVALVGS-EGDLIQLK---------SEAIQSSQFQSRL------NEVIRTLTQVI----SFSGVIGLQSNAAWL 121 (589)
T ss_pred HHHhhchhheecc-ccceeeeh---------hhcccCHHHHHHH------HHHHHHHHHHH----cCccccccccchHHH
Confidence 9999999999999 99999999 9999999999999 99999999999 999999999999999
Q ss_pred HHHHHHhhhhccccCcCCcccccccCCCccccccCchhHHHHHHHHhhccCCCCCCccccchhHHHHHhhc---ccCCCC
Q 000205 1376 MSFLRCHLWSKELLNTDNNIKADLLGSKSVSQRFSNDNVVMKLGLWLSHLNYSGTDATARVVTVSTILRCL---TRAPRL 1452 (1860)
Q Consensus 1376 ~~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~~wl~~~~~~~~~~~~~~~~v~tvlrcl---~~aprl 1452 (1860)
+||||.+.+|.+|+|.++| .| ++|+||.|++++..+|+++.|++|| +.||.+.|++||++| +++.+|
T Consensus 122 LGhLhls~~ss~~srtsvP--------~d-~sYLpE~S~iRaai~f~i~~GkkGp-e~vpp~lvkvvl~~ia~vgeS~qy 191 (589)
T PF11229_consen 122 LGHLHLSTLSSSQSRTSVP--------TD-FSYLPESSFIRAAIDFLIEAGKKGP-ESVPPSLVKVVLKPIATVGESYQY 191 (589)
T ss_pred HHHHHHhhcccccCCCCCC--------Cc-cccCcchhHHHHHHHHHHHccccCC-ccCCHHHHHHHHHHhhhcCCCCCC
Confidence 9999999999999999999 66 9999999999999999999999999 899999999999999 889999
Q ss_pred CCCChHHHHHHhhhhhhhhccCCCCCCccchhhHHHHHHHHHHhhhcccCchhhhhhhccCccccchhhhhhHHHHHHhH
Q 000205 1453 PTLDWGAIIRCCMRYEAQIAKGLPPDSAYKRGILREECIQFSLAHANQFHPLLSFLDELSDLPRFKTLELNLQATLLFHL 1532 (1860)
Q Consensus 1453 p~~dwg~iirr~m~~e~~~~~~~~~~~~~~~~~lre~c~~f~~aha~~~~pll~fld~l~~~~r~~~le~n~q~~ll~~l 1532 (1860)
||+||++++.++||+|+ +++++.+|++||++||+.-.....||..=---|.|.+|+.|.+.+|+.++
T Consensus 192 PPVNWaalLsPLMRlnf-------------GeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~~tk~~L~~Sl 258 (589)
T PF11229_consen 192 PPVNWAALLSPLMRLNF-------------GEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSVNTKKYLFESL 258 (589)
T ss_pred CCccHHHHhhHHHhccc-------------cHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhHHHHHHHHHHH
Confidence 99999999999999999 89999999999999999665566666665555666699999999999999
Q ss_pred HHHHHHhchhhHHHHHHHHhhhhhhcccccccCCCCCcchHHHHHhhHHHhhhhccccccCCcchHHHHHHHHHhhcccc
Q 000205 1533 ADLIKLFSGSRLEKLFDDMADYLFSVTSYQVYNPDQKSFLRVSFWNGLHHCLEEASLDSLEHIPNMERCMEVLFALLPAS 1612 (1860)
Q Consensus 1533 ~~l~k~fs~srl~kl~~d~~~~~~s~~~~~~~~~~q~~~lr~s~w~gl~~~l~e~~~~~~~~~~~i~~c~e~l~~llp~~ 1612 (1860)
+.|||+.++++|+.|.+.++ +..|++.|+.+++.+|.+...||.|+|+.+++. ++.|+.+++|+|++|++||++
T Consensus 259 ~~wmkhVsedqiQ~Fve~l~-----vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~-~h~Ws~Lc~ttekIF~lLPn~ 332 (589)
T PF11229_consen 259 SLWMKHVSEDQIQAFVENLM-----VQQFKAASRPSNPELCQSALQGLSQAMKLPSPA-QHCWSLLCETTEKIFDLLPNK 332 (589)
T ss_pred HHHHhhCCHHHHHHHHHHHH-----HHHHhhcCCCCChHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999 999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhhccCccchHHHHHHHHHHhhhhchHHHHHHhhhhccCCCCCCchhHHHHHHHHhhhhhhhcCccccccchhhhHH
Q 000205 1613 QYAAIIGVNQKNLVEEWSAAVRCLGKARREWVLDFLQVLHVNPLQGDVQLSEVVKKMQAKAKLVRIGSFPLTELGKLKAY 1692 (1860)
Q Consensus 1613 ~~~~~~~~~~~~~~~ews~a~~cl~~~~~~wl~~~lqv~~~~~~~~~~~~~~v~kk~~~~~~l~~~g~~~~~el~~~k~~ 1692 (1860)
++++.+|.|....|||.+|+++.+.++-||++ .| ++|.+|+|+|||++|++|+..|.++.+.
T Consensus 333 --------i~~~eveLYi~vAkCLSEMtd~eidrItqitK---------~n-ieKa~FVr~yLVSQGR~PL~~LnDvL~~ 394 (589)
T PF11229_consen 333 --------IQRNEVELYIGVAKCLSEMTDTEIDRITQITK---------DN-IEKAIFVRLYLVSQGRLPLMGLNDVLST 394 (589)
T ss_pred --------ccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhh---------cc-chhhhhhhheehhcccccHhHHHHHHHH
Confidence 99999999999999999999999999999988 44 8899999999999999999999999999
Q ss_pred hhcccccch--hHHHHHH--HHHhhccccch-hh-HHhHhhhcceeeccccchhHH---------HHHH-----------
Q 000205 1693 ILNFKSLGV--WDVLIEV--VAALQHAEEGV-RR-QWLVDTIEISCVSCYPSTALQ---------FVGL----------- 1746 (1860)
Q Consensus 1693 il~~~~~~~--w~vl~e~--~~al~~a~~~~-kr-qwlld~~~i~cv~~~pst~l~---------f~~l----------- 1746 (1860)
+.++.++++ ||+|+.+ +++++|+++|| || |||+|.|+.++..+|.||..| |+.+
T Consensus 395 a~~~~eket~~WmlL~sfyqarivSh~nTGV~KRmEWLLELMGyIRnvAy~Stsvqnv~~~ealDFLl~VFA~aVVaWad 474 (589)
T PF11229_consen 395 AMQHHEKETVAWMLLHSFYQARIVSHSNTGVLKRMEWLLELMGYIRNVAYQSTSVQNVDLKEALDFLLQVFAAAVVAWAD 474 (589)
T ss_pred HHhcchHHHHHHHHHHHHHHheeecccccchHHHHHHHHHHHHHHHHHHccCccccccCHHHHHHHHHHHHHHHhhhhcc
Confidence 999988887 9999999 99999999999 99 999999999999999999866 5554
Q ss_pred --------hhhcccC----------------CCcccccccccccccCccchhhhccCCChhhhhhhHHHHHHHHHh
Q 000205 1747 --------LSGSCCR----------------YMPFLILDSSTVLNDLPVTLPSLLSKPGWETVAEPFMSYLWASTE 1798 (1860)
Q Consensus 1747 --------ls~scc~----------------y~p~~~~~~~~vl~dlpvtl~sll~~~~w~~~~~~~~~~l~~~~e 1798 (1860)
+|++|.+ ..|+.++..++.|+.||.+|+.||++++|+++|++||||||++||
T Consensus 475 h~~plllg~sa~w~pw~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~lp~s~~~ll~kepwk~qt~kfidwl~si~e 550 (589)
T PF11229_consen 475 HAAPLLLGLSASWLPWHQENGPAGPASSFLGRSPMHRVTLQECLTLLPSSMLLLLQKEPWKEQTQKFIDWLFSIME 550 (589)
T ss_pred CCchhhhccccccCCCccccCCCCCchhhhcCCcchhhHHHHHHHhCchhHHHHhccCchHHHHHHHHHHHHHHHh
Confidence 6888766 577888999999999999999999999999999999999999999
No 2
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=100.00 E-value=3.5e-40 Score=366.77 Aligned_cols=223 Identities=39% Similarity=0.654 Sum_probs=206.8
Q ss_pred HHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc-ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhh
Q 000205 533 LLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS-VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGS 611 (1860)
Q Consensus 533 Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk-~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~ 611 (1860)
|+++|+|++ ++ +.+|+....+|++||+++.|+ .|+|+|+++|.+|.. +++...+++++|||+++|++++|+||+
T Consensus 1 ll~~L~~~l--~~--~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~-~~~~~~~~~~~rLl~~lw~~~~r~f~~ 75 (234)
T PF12530_consen 1 LLPLLLYKL--GK--ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVE-QGSLELRYVALRLLTLLWKANDRHFPF 75 (234)
T ss_pred ChHHHHHHh--cC--CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHhCchHHHH
Confidence 578999998 55 669999999999999999999 999999999996653 444455679999999999999999999
Q ss_pred HHhhhcC------cCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhh-ccCchhHHHHhHHHHHHhhhcccc
Q 000205 612 LQGVLQP------KLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACI-ESRDPIIQALGLQSLAYLCEADVI 684 (1860)
Q Consensus 612 LQ~lL~~------s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Cl-ks~~~~v~ALALdALssLCeaDVV 684 (1860)
|+++|.+ ...++.+..||..+++|+++|++|+.+|+||.||++.|++|+ ++++++++|+++|+|+.||+++||
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv 155 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV 155 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc
Confidence 9999987 334456789999999999999999999999999999999999 899999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHHHh---cccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHh
Q 000205 685 DFYTAWDVIAKHMLDYSLDPMLAQSLCILL---RWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEAL 761 (1860)
Q Consensus 685 Df~SAWkVLa~KL~~~~~rPlVlkSLCeLf---p~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~AL 761 (1860)
||++||++|+||+++ ++||.|++++|+|| |+|++|+++|++++.++++.||+++.+++.++++.|++|+.+||+||
T Consensus 156 d~~s~w~vl~~~l~~-~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~al 234 (234)
T PF12530_consen 156 DFYSAWKVLQKKLSL-DYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEAL 234 (234)
T ss_pred cHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhcC
Confidence 999999999999977 99999999888888 89999999999999999999999999999889999999999999986
No 3
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=98.85 E-value=1.3e-08 Score=114.94 Aligned_cols=224 Identities=25% Similarity=0.327 Sum_probs=182.0
Q ss_pred HHHHHhhhcC-CCchhHHHHHHHHHHHHHhhccccCCCccccCCCCCcceeecccCcchH-----HHHHHHHHHHHhhcc
Q 000205 82 LLELQSALEG-SDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVH-----TELVQQVLLFMTQNK 155 (1860)
Q Consensus 82 L~~L~s~L~~-ss~r~~~~lvkaI~~Ll~l~~~r~~g~~~~~~~~~HPfIsiL~sr~d~~-----~~LlqQV~~~~~q~~ 155 (1860)
|+.|+.++.. ++|++...+++++..|..-+ . +..||++++|.+..+.- ...+++++.+..+++
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~----------~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~ 70 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK----------N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND 70 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC----------c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc
Confidence 5677776644 49999999999999976544 1 34589999987766632 355799999999854
Q ss_pred cccccchhhhchhhhhhhhccCCCCCchhhHHHHHHHH---hhhhhcCCCCCCchhHHHHHHhhhcccCCcchHHHhhhh
Q 000205 156 HLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVS---SVASLCCSFPSDALPVFEVLRGCLEYLPLKNSKEQRNLE 232 (1860)
Q Consensus 156 ~~~~~~viefLrPFl~y~~c~~P~~~~~~~~~~r~Ll~---slas~~~S~~~~al~vlkLL~e~L~~l~~~d~e~~~e~~ 232 (1860)
+. ..||+|++..+..++|...++...+|+++++ +++..|+..|+...++++.+.+|+. .++.+..
T Consensus 71 r~-----f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~---~~~~~~~---- 138 (234)
T PF12530_consen 71 RH-----FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN---QSCDEVA---- 138 (234)
T ss_pred hH-----HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh---ccccHHH----
Confidence 43 4999999999999999999988999999998 5667999999999999999999998 2233321
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhHHhhhhhhhhhhHhhccccccccCCCchhHHHHHHHHHHHHhhhccccCcchhHH
Q 000205 233 FVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVLKHVLVAQFELRLQYKPELSSV 312 (1860)
Q Consensus 233 ~l~~~~vday~vllr~L~~~~~~~~~~ql~~v~l~~~ll~~c~~~~~~~gd~s~~l~ll~~ll~~qkdl~l~y~~~~~vv 312 (1860)
|..++|.+..+ | .+.+++.......++++++.+|.|.+...
T Consensus 139 ---------------------------~alale~l~~L---c---------~~~vvd~~s~w~vl~~~l~~~~rp~v~~~ 179 (234)
T PF12530_consen 139 ---------------------------QALALEALAPL---C---------EAEVVDFYSAWKVLQKKLSLDYRPLVLKS 179 (234)
T ss_pred ---------------------------HHHHHHHHHHH---H---------HHhhccHHHHHHHHHHhcCCccchHHHHH
Confidence 12233323322 3 67888888989899999999999999999
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHhhcccccccccCCCccCcchhHHHHHhH
Q 000205 313 ILYLFSILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIFPI 367 (1860)
Q Consensus 313 LisLa~lLl~s~~~~eQl~iLkl~lfLl~wk~~~~~~~~~~~c~~~~ell~v~Pi 367 (1860)
|.+++.++-+.+.+++|++.++--++.+.|+..+..+.+.+.|+.+.+..++.|+
T Consensus 180 l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~al 234 (234)
T PF12530_consen 180 LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEAL 234 (234)
T ss_pred HHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999998877663
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=7.5 Score=53.32 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=70.0
Q ss_pred cchHHHHHHHHHccC-CCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCccc--HHHHHHHHHHhhhcCCC
Q 000205 511 GSSAVDAFATVGKMD-PKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVM--IPLVVQTILPMLHKNAK 587 (1860)
Q Consensus 511 ~~~al~~L~~L~k~d-P~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~--iP~VLrtL~pmLsk~s~ 587 (1860)
++..+++++.+++.+ |. .-|-|++.|+... .++++..-++.+.+|.++|..-.+... ++-+++++..-++..+.
T Consensus 97 r~k~~dviAeia~~~l~e-~WPell~~L~q~~--~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 97 RHKLADVIAEIARNDLPE-KWPELLQFLFQST--KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS 173 (1075)
T ss_pred HHHHHHHHHHHHHhcccc-chHHHHHHHHHHh--cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc
Confidence 588999999999876 55 2489999999998 777777889999999999999988864 44555555544443455
Q ss_pred CchhHHHHHHHHHHHhhc
Q 000205 588 PVLYATATRLLCQTWEIN 605 (1860)
Q Consensus 588 ~~LrA~ALRLLtkLWkkq 605 (1860)
+ .|..|+|-+...-.-.
T Consensus 174 ~-vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 174 P-VRVAAVRALGAFAEYL 190 (1075)
T ss_pred h-HHHHHHHHHHHHHHHh
Confidence 5 8999999887655544
No 5
>PRK09687 putative lyase; Provisional
Probab=94.10 E-value=1.2 Score=52.79 Aligned_cols=183 Identities=11% Similarity=0.073 Sum_probs=127.6
Q ss_pred CCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh---cccchhhHHhhhcCcCCCCcc
Q 000205 549 VCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI---NDRAFGSLQGVLQPKLLIDFK 625 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk---qdRafP~LQ~lL~~s~~~~~~ 625 (1860)
.++.++.....+|..++. ..+++.+.+.++ +.++..|..|++.|.++=.. .++++|.|..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D------ 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS-----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED------ 102 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC------
Confidence 477888999999998885 344555555433 57889999999999997432 357999999885532
Q ss_pred chhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHH
Q 000205 626 SERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPM 705 (1860)
Q Consensus 626 ~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPl 705 (1860)
..+++.-+.+.++-++|...+....+.+..+..+..++++.+.-.+..||..+...+ +-..|-+-+. +.+|.
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~------ai~~L~~~L~--d~~~~ 174 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA------AIPLLINLLK--DPNGD 174 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH------HHHHHHHHhc--CCCHH
Confidence 357888899999999998877778888888888888888888877777776554433 3355555565 44667
Q ss_pred HHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 706 LAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 706 VlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
|...-..=++....+++ ++++.|.....+.+ + .||.+|..+|++..
T Consensus 175 VR~~A~~aLg~~~~~~~-------~~~~~L~~~L~D~~------~-~VR~~A~~aLg~~~ 220 (280)
T PRK09687 175 VRNWAAFALNSNKYDNP-------DIREAFVAMLQDKN------E-EIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHhcCCCCCH-------HHHHHHHHHhcCCC------h-HHHHHHHHHHHccC
Confidence 77666666655432222 33344444433322 2 57999999999976
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.33 E-value=1 Score=55.97 Aligned_cols=198 Identities=16% Similarity=0.205 Sum_probs=123.8
Q ss_pred CcchHHHHHhhhhhhc-cCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc--ccchhhHHhhhcCcCCCCccc
Q 000205 550 CQNKLPKLLGMLPSIA-SQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIN--DRAFGSLQGVLQPKLLIDFKS 626 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA-~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq--dRafP~LQ~lL~~s~~~~~~~ 626 (1860)
+...+.-..-.+..+. .+...+.++..+++.-|. +.++..|+.|+|.++.+...+ +-..|.+.+.+.. .
T Consensus 55 ~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~-------~ 126 (526)
T PF01602_consen 55 DLELKRLGYLYLSLYLHEDPELLILIINSLQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSD-------P 126 (526)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHS-------S
T ss_pred CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcC-------C
Confidence 4444433333333333 333456777777775554 578889999999999987322 2234444444443 2
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcchh-hHHHHHHhhccCchhHHHHhHHHHHHh-hhcccc-chH-HHHHHHHHhhcCCCC
Q 000205 627 ERNICISIAASIHDVCRKDPDRGVD-LILSVAACIESRDPIIQALGLQSLAYL-CEADVI-DFY-TAWDVIAKHMLDYSL 702 (1860)
Q Consensus 627 ewEv~IArAasIRDICk~rPdhG~D-LL~~IS~Clks~~~~v~ALALdALssL-CeaDVV-Df~-SAWkVLa~KL~~~~~ 702 (1860)
.+.++-+.+.++..+++.+|+.-.+ +++.+...+++.++.+...|+-++..+ |..+.. ++. ...+.+.+-+ . ..
T Consensus 127 ~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l-~-~~ 204 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL-S-DP 204 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH-T-CC
T ss_pred chHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc-c-cc
Confidence 4577778888999999999985444 899999999998999999999999999 555542 222 2223333333 3 56
Q ss_pred CHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 703 DPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 703 rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
+|.+...+-+++........+.+.- ..+++.+=+.-.+.+ ..|+-+|-+++..+.
T Consensus 205 ~~~~q~~il~~l~~~~~~~~~~~~~-~~~i~~l~~~l~s~~-------~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYAPMEPEDADK-NRIIEPLLNLLQSSS-------PSVVYEAIRLIIKLS 259 (526)
T ss_dssp SHHHHHHHHHHHTTSTSSSHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhcccCChhhhhH-HHHHHHHHHHhhccc-------cHHHHHHHHHHHHhh
Confidence 9999999999997655433332210 444444444433322 245777777766433
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.68 E-value=5.6 Score=50.87 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhHhcCCCc--cchHHHHHHHHHccCCCC----CchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhcc
Q 000205 493 MSMLLGAIASVLVIHPSL--GSSAVDAFATVGKMDPKL----GVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIAS 566 (1860)
Q Consensus 493 ~p~~L~LlLsaLLlh~s~--~~~al~~L~~L~k~dP~q----avp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~ 566 (1860)
.|.....+..+ +.|++. ++.+++.+..++...... .-..+++.+++.+ . ..+..+...-...|-.++.
T Consensus 75 ~~~~~~~L~~g-L~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L----~-~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 75 LPQYQPFLQRG-LTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL----R-DPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH----c-CCcHHHHHHHHHHHHHHhC
Confidence 55555555554 557775 355777777776554220 1145677777776 2 3466778888888888888
Q ss_pred CcccHHHH-----HHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHH
Q 000205 567 QSVMIPLV-----VQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDV 641 (1860)
Q Consensus 567 hk~~iP~V-----LrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDI 641 (1860)
++..+..+ +..|..++++ .+...|...+.+++++=++++..+.....
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~--------------------------- 200 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVN--------------------------- 200 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHh---------------------------
Confidence 88766655 5555555542 24445555556666555555444433331
Q ss_pred hhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc-cchHH---HHHHHHHhhcCCCCCH----HHHHHHHHH
Q 000205 642 CRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADV-IDFYT---AWDVIAKHMLDYSLDP----MLAQSLCIL 713 (1860)
Q Consensus 642 Ck~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV-VDf~S---AWkVLa~KL~~~~~rP----lVlkSLCeL 713 (1860)
..++..+=+++++++.-++.-+++-+..|++..- ..+.. ..+.|...+.+...+| ..+-+.-.|
T Consensus 201 --------sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 201 --------SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred --------ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 1144444455555555555555555555554322 22221 2233444444444444 333455577
Q ss_pred hcccCC-ChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 714 LRWGAM-DAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 714 fp~gav-daeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
|+..+. +..+.-+..-+++..|.+...+.|+ ..+..|+++||...
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~-------~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQDP-------TIREVAFDTLGQIG 318 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHHh
Confidence 765443 4433333344567777787665554 34788888888665
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.36 E-value=11 Score=51.47 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=89.3
Q ss_pred cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCch
Q 000205 511 GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVL 590 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~L 590 (1860)
++.|++.|..+. +..+ ++.|.-.+ + +.++.++..-+++|-.++......+.+.+.++ +.++..
T Consensus 638 R~~Av~~L~~~~---~~~~----~~~L~~aL---~--D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~-----~~d~~V 700 (897)
T PRK13800 638 RRTAVAVLTETT---PPGF----GPALVAAL---G--DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG-----SPDPVV 700 (897)
T ss_pred HHHHHHHHhhhc---chhH----HHHHHHHH---c--CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc-----CCCHHH
Confidence 355777776664 2222 33333332 2 34777888888888777544333443433333 356778
Q ss_pred hHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHH
Q 000205 591 YATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQAL 670 (1860)
Q Consensus 591 rA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~AL 670 (1860)
|..|++.|..++.... +.|.++|.+. +.+++.+.+.++..+ ++. ..+...++++++.+...
T Consensus 701 R~~A~~aL~~~~~~~~---~~l~~~L~D~-------d~~VR~~Av~aL~~~---~~~------~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 701 RAAALDVLRALRAGDA---ALFAAALGDP-------DHRVRIEAVRALVSV---DDV------ESVAGAATDENREVRIA 761 (897)
T ss_pred HHHHHHHHHhhccCCH---HHHHHHhcCC-------CHHHHHHHHHHHhcc---cCc------HHHHHHhcCCCHHHHHH
Confidence 8888888887764332 2334444432 344554444444443 221 23445566667777777
Q ss_pred hHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 671 GLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 671 ALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
+.++|..+...+... ...|..-+. +.+|.|..+..+-|+..
T Consensus 762 aa~aL~~~~~~~~~~----~~~L~~ll~--D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 762 VAKGLATLGAGGAPA----GDAVRALTG--DPDPLVRAAALAALAEL 802 (897)
T ss_pred HHHHHHHhccccchh----HHHHHHHhc--CCCHHHHHHHHHHHHhc
Confidence 777777776544311 223333333 34577777777777533
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=90.41 E-value=13 Score=50.01 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred CcchHHHHHhhhhhhcc-CcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchh
Q 000205 550 CQNKLPKLLGMLPSIAS-QSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSER 628 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~-hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ew 628 (1860)
|.+.+.-+..-|-..+. +..-.-+++.+++.=+. +.+|..|+.|||-|+.+=. +-..+.+...+...- .+..-
T Consensus 81 d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk~L---~D~~p 154 (746)
T PTZ00429 81 DLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRRAV---ADPDP 154 (746)
T ss_pred CHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHh---cCCCH
Confidence 34444444333434444 34434456666663333 5789999999999997532 224444433332210 11245
Q ss_pred hHHHHHHHHHHHHhhcCCCc--chhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCC-CCCHH
Q 000205 629 NICISIAASIHDVCRKDPDR--GVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY-SLDPM 705 (1860)
Q Consensus 629 Ev~IArAasIRDICk~rPdh--G~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~-~~rPl 705 (1860)
.++-+.|.|+..+-+.+|+. ..+++..+.+++.+.++.+++-|+-++.++|+.+--.+--+.+.+.+-+... +-+|+
T Consensus 155 YVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW 234 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW 234 (746)
T ss_pred HHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH
Confidence 67777888999999999983 5678999999999999999999999999999876311212222222222211 33566
Q ss_pred HHHHHHHHhcccC-CChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 706 LAQSLCILLRWGA-MDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 706 VlkSLCeLfp~ga-vdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
..-.+.+++.... .+.++. .++++.+=...+|.++ .|.-+|-+++-++.
T Consensus 235 ~Qi~IL~lL~~y~P~~~~e~----~~il~~l~~~Lq~~N~-------AVVl~Aik~il~l~ 284 (746)
T PTZ00429 235 GQLYILELLAAQRPSDKESA----ETLLTRVLPRMSHQNP-------AVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhc
Confidence 6666666663222 233333 4555555554454332 45666666655443
No 10
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.66 E-value=13 Score=50.78 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=138.1
Q ss_pred HHHHHHHHHhHhcCCCc--cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccH
Q 000205 494 SMLLGAIASVLVIHPSL--GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMI 571 (1860)
Q Consensus 494 p~~L~LlLsaLLlh~s~--~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~i 571 (1860)
|..+..+..+ +-++.. +..+++.|..++...+.. + .+.-.+ . ..+|.++...++.|..+.... .
T Consensus 651 ~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~--~----~L~~~L--~---~~d~~VR~~A~~aL~~~~~~~--~ 716 (897)
T PRK13800 651 PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPA--P----ALRDHL--G---SPDPVVRAAALDVLRALRAGD--A 716 (897)
T ss_pred hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCch--H----HHHHHh--c---CCCHHHHHHHHHHHHhhccCC--H
Confidence 3334444433 333432 355777777775433321 2 222223 1 247788888888888776432 2
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchh
Q 000205 572 PLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVD 651 (1860)
Q Consensus 572 P~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~D 651 (1860)
+.+++ +|. +.++..|.-|++-|.++ . .-+.|..++.+ ..++++.+.|.++-.+...++. .
T Consensus 717 ~~l~~----~L~-D~d~~VR~~Av~aL~~~---~--~~~~l~~~l~D-------~~~~VR~~aa~aL~~~~~~~~~-~-- 776 (897)
T PRK13800 717 ALFAA----ALG-DPDHRVRIEAVRALVSV---D--DVESVAGAATD-------ENREVRIAVAKGLATLGAGGAP-A-- 776 (897)
T ss_pred HHHHH----Hhc-CCCHHHHHHHHHHHhcc---c--CcHHHHHHhcC-------CCHHHHHHHHHHHHHhccccch-h--
Confidence 33333 343 56777888888888764 1 12455555544 3578888888888877554442 1
Q ss_pred hHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHH
Q 000205 652 LILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTV 731 (1860)
Q Consensus 652 LL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~V 731 (1860)
++.+...++++++.+.+.|+.+|..+...+.+. ..+..-+. +.+|.|..+..+-++...- .+.. ..+
T Consensus 777 -~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~-----~~l~~aL~--d~d~~VR~~Aa~aL~~l~~-~~a~----~~L 843 (897)
T PRK13800 777 -GDAVRALTGDPDPLVRAAALAALAELGCPPDDV-----AAATAALR--ASAWQVRQGAARALAGAAA-DVAV----PAL 843 (897)
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhH-----HHHHHHhc--CCChHHHHHHHHHHHhccc-cchH----HHH
Confidence 455567777778888888888888887553221 12334444 3468888777777753321 1111 222
Q ss_pred HHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCcccchHHHHHhccChHHHHHHHHHH
Q 000205 732 LKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQ 800 (1860)
Q Consensus 732 I~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLL 800 (1860)
+..| .+++ + .||.+|-.+|+.+.. =|. ......+++++.+++|..+...-+
T Consensus 844 ~~~L----~D~~------~-~VR~~A~~aL~~~~~--~~~-----a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 844 VEAL----TDPH------L-DVRKAAVLALTRWPG--DPA-----ARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred HHHh----cCCC------H-HHHHHHHHHHhccCC--CHH-----HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222 2222 2 678999999988521 111 122456777888888877765544
No 11
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.78 E-value=32 Score=44.78 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=126.1
Q ss_pred ecccCcchHHHHHHHHHHHHhhcccccccchhhhchhhhhhhhccCCCCCchhhHHHHHHHHhhhhhcCCCCCCchhHHH
Q 000205 132 ILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCCSFPSDALPVFE 211 (1860)
Q Consensus 132 iL~sr~d~~~~LlqQV~~~~~q~~~~~~~~viefLrPFl~y~~c~~P~~~~~~~~~~r~Ll~slas~~~S~~~~al~vlk 211 (1860)
++|.|..+--|+=.+|..+++.++..-...+|+.|.-=+.|+.-. | + +. -.|+|-.|-.-+=..+.+.++=+
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~-n---~-rk---GgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA-N---M-RK---GGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc-c---c-cc---chHHHHHHHHHHhccccHHHHHH
Confidence 468888888999999999999988887888999887666665544 2 2 22 34555433222224445668888
Q ss_pred HHHhhhcccCCcchHHHhhhhhhHHHHHHHHHHHHHHHHhcCcchhHHhhhhhhhhhhHhhccccccccCCCchhHHHHH
Q 000205 212 VLRGCLEYLPLKNSKEQRNLEFVLDCMVDSYIVVLRHLVSNGLLVTEAQMSGMELLGTVLSLYTSPFKQSGGVEHIVEVL 291 (1860)
Q Consensus 212 LL~e~L~~l~~~d~e~~~e~~~l~~~~vday~vllr~L~~~~~~~~~~ql~~v~l~~~ll~~c~~~~~~~gd~s~~l~ll 291 (1860)
++...+.||...|..-. .|-++=..-+.+-++.....+...+..+ .|...---....+.--|++
T Consensus 85 iv~Pv~~cf~D~d~~vR--------yyACEsLYNiaKv~k~~v~~~Fn~iFdv--------L~klsaDsd~~V~~~aeLL 148 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVR--------YYACESLYNIAKVAKGEVLVYFNEIFDV--------LCKLSADSDQNVRGGAELL 148 (675)
T ss_pred hhHHHHHhccCccceee--------eHhHHHHHHHHHHhccCcccchHHHHHH--------HHHHhcCCccccccHHHHH
Confidence 99999999999987532 1222222244556666666666666666 2322222222334444566
Q ss_pred HHHHHH--Hh---hhccccCcchhHHHHHHHH-HHhcChhhHHHHHHHHHHHHHhhcccccccccCCCccCcchhHHHHH
Q 000205 292 KHVLVA--QF---ELRLQYKPELSSVILYLFS-ILIDSELEHEQLCILKFLLFLINWKSENEYGFGGATCDLSEELLLIF 365 (1860)
Q Consensus 292 ~~ll~~--qk---dl~l~y~~~~~vvLisLa~-lLl~s~~~~eQl~iLkl~lfLl~wk~~~~~~~~~~~c~~~~ell~v~ 365 (1860)
-|++-. .+ .|. +++ .+-.|-+ |-...+. -=.|+++|=.-=-...+..-|+.-. -+..
T Consensus 149 dRLikdIVte~~~tFs---L~~---~ipLL~eriy~~n~~---------tR~flv~Wl~~Lds~P~~~m~~yl~--~~ld 211 (675)
T KOG0212|consen 149 DRLIKDIVTESASTFS---LPE---FIPLLRERIYVINPM---------TRQFLVSWLYVLDSVPDLEMISYLP--SLLD 211 (675)
T ss_pred HHHHHHhccccccccC---HHH---HHHHHHHHHhcCCch---------HHHHHHHHHHHHhcCCcHHHHhcch--HHHH
Confidence 666543 11 233 222 2222222 2122221 1245566643222212222222222 3667
Q ss_pred hHhHhccCCCcchHHHHHHHHHHH
Q 000205 366 PILNLMSSPSKSVKGVASDLLVLL 389 (1860)
Q Consensus 366 PiiqllSspS~s~k~lA~~lL~~v 389 (1860)
+.++.||-+++.+..+++.++.-+
T Consensus 212 GLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 212 GLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHH
Confidence 799999999999999999988877
No 12
>PRK09687 putative lyase; Provisional
Probab=86.03 E-value=56 Score=39.18 Aligned_cols=182 Identities=9% Similarity=-0.015 Sum_probs=120.2
Q ss_pred cCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh----cccchhhHHhhhcCcCCCC
Q 000205 548 VVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI----NDRAFGSLQGVLQPKLLID 623 (1860)
Q Consensus 548 e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk----qdRafP~LQ~lL~~s~~~~ 623 (1860)
..+|..+..-...|-.++..+...+-++..|..++.++..+..|.-|+..|-.+=.. .+++...+...+.+
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D----- 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD----- 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC-----
Confidence 348899999999999998765433445555554544567788899999998876111 23445555554444
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCC
Q 000205 624 FKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLD 703 (1860)
Q Consensus 624 ~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~r 703 (1860)
..|+++.+-+.++-.+ .+.+-++.+-.+++++++.+-.-|..||-.++. +--.+-..|-+.+. +.+
T Consensus 140 --~~~~VR~~a~~aLg~~------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~----~~~~~~~~L~~~L~--D~~ 205 (280)
T PRK09687 140 --KSTNVRFAVAFALSVI------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY----DNPDIREAFVAMLQ--DKN 205 (280)
T ss_pred --CCHHHHHHHHHHHhcc------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC----CCHHHHHHHHHHhc--CCC
Confidence 3678888777777433 246788888889999999999999999988832 12244455666665 457
Q ss_pred HHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc
Q 000205 704 PMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV 766 (1860)
Q Consensus 704 PlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I 766 (1860)
+.|...-..-++.... ..++..|=+...+.+ ++..|..|||++.=
T Consensus 206 ~~VR~~A~~aLg~~~~---------~~av~~Li~~L~~~~---------~~~~a~~ALg~ig~ 250 (280)
T PRK09687 206 EEIRIEAIIGLALRKD---------KRVLSVLIKELKKGT---------VGDLIIEAAGELGD 250 (280)
T ss_pred hHHHHHHHHHHHccCC---------hhHHHHHHHHHcCCc---------hHHHHHHHHHhcCC
Confidence 7777777776654221 134444545443321 36789999999884
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=86.00 E-value=8.8 Score=47.98 Aligned_cols=234 Identities=13% Similarity=0.152 Sum_probs=147.2
Q ss_pred CCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhh-----HHhhhcCcCCCC
Q 000205 549 VCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGS-----LQGVLQPKLLID 623 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~-----LQ~lL~~s~~~~ 623 (1860)
.||..+-.-|.+|..++ ++..+|.++..+...+. +++|..|-.|+-.+.++-+..+..++. +.++|.+
T Consensus 91 ~n~~~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d----- 163 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIR-TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD----- 163 (526)
T ss_dssp SSHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH-----
T ss_pred CCHHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC-----
Confidence 36777788899999988 55666777777776776 788899999999999999887766544 4444432
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH----HhhccCchhHHHHhHHHHHHhhhccccch--HHHHHHHHHhh
Q 000205 624 FKSERNICISIAASIHDVCRKDPDRGVDLILSVA----ACIESRDPIIQALGLQSLAYLCEADVIDF--YTAWDVIAKHM 697 (1860)
Q Consensus 624 ~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS----~Clks~~~~v~ALALdALssLCeaDVVDf--~SAWkVLa~KL 697 (1860)
....+..+...++.+| +..|+...+++..+- ..+...+|-.+.-.++.+..++..+--+. ...-+.+.+.+
T Consensus 164 --~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l 240 (526)
T PF01602_consen 164 --KDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLL 240 (526)
T ss_dssp --SSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHh
Confidence 2355666666666777 444443336666664 45577899999999999999998777666 45666666666
Q ss_pred cCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCcc
Q 000205 698 LDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFK 777 (1860)
Q Consensus 698 ~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~ 777 (1860)
.. ..|.|.-+.++++-...-+.. ....+++.|=.+..++++ .++-.|+.+|...--.. |..+- ..
T Consensus 241 ~s--~~~~V~~e~~~~i~~l~~~~~----~~~~~~~~L~~lL~s~~~-------nvr~~~L~~L~~l~~~~-~~~v~-~~ 305 (526)
T PF01602_consen 241 QS--SSPSVVYEAIRLIIKLSPSPE----LLQKAINPLIKLLSSSDP-------NVRYIALDSLSQLAQSN-PPAVF-NQ 305 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHHHTSSSH-------HHHHHHHHHHHHHCCHC-HHHHG-TH
T ss_pred hc--cccHHHHHHHHHHHHhhcchH----HHHhhHHHHHHHhhcccc-------hhehhHHHHHHHhhccc-chhhh-hh
Confidence 63 467777777777754333333 555556666665554442 35777777777665443 22111 00
Q ss_pred cchHHHHHhccChHHHHHHHHHHHHHHHHH
Q 000205 778 QRSFEILISETNPVVLRAMEGFQVKIITHE 807 (1860)
Q Consensus 778 gs~y~qLLsetn~sVL~A~eeLLtslIk~E 807 (1860)
......+....+..+....-+.+.++...+
T Consensus 306 ~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 306 SLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred hhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 111122223455566666666665665543
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.97 E-value=54 Score=42.31 Aligned_cols=256 Identities=18% Similarity=0.185 Sum_probs=145.3
Q ss_pred HHHHHHhHhcCCCc--cchHHHHHHHHHccCCCCCc---hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccH
Q 000205 497 LGAIASVLVIHPSL--GSSAVDAFATVGKMDPKLGV---PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMI 571 (1860)
Q Consensus 497 L~LlLsaLLlh~s~--~~~al~~L~~L~k~dP~qav---p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~i 571 (1860)
+.-.+...+-+++. ...|.+++..+++..+.... +++..-| -.+ .+ ..++..+..+++.+..++.+....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L-~~l--~~--~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKL-KSL--MS--QSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHH-HHH--Hh--ccCHHHHHHHHHHHHHHHhcCHHH
Confidence 34444455566654 37799999999976443320 1112222 222 22 226788999999999998876333
Q ss_pred HHHHH---HHHHhhh--cCCCCchhHHHHHHHHHHHh--------hcccchhhHHhhhcCcCCCCccchhhHHHHHHHHH
Q 000205 572 PLVVQ---TILPMLH--KNAKPVLYATATRLLCQTWE--------INDRAFGSLQGVLQPKLLIDFKSERNICISIAASI 638 (1860)
Q Consensus 572 P~VLr---tL~pmLs--k~s~~~LrA~ALRLLtkLWk--------kqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasI 638 (1860)
-.+.. ++..++. ++.+..++.-++.+++++=+ .+..+++.|..++......+ ....=...+++...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC-cccchhhhhHHHHH
Confidence 32222 3432222 14566678899999999955 33456777777776542211 00111122333333
Q ss_pred HHHhhcCCCcc----hhhHHHHHHhhccCchhHHHHhHHHHHHhhhc----ccc------chHHHHHHHHHhhcCC--CC
Q 000205 639 HDVCRKDPDRG----VDLILSVAACIESRDPIIQALGLQSLAYLCEA----DVI------DFYTAWDVIAKHMLDY--SL 702 (1860)
Q Consensus 639 RDICk~rPdhG----~DLL~~IS~Clks~~~~v~ALALdALssLCea----DVV------Df~SAWkVLa~KL~~~--~~ 702 (1860)
-.+....|..- -+++..+..+.++.+++....|+|++..+|.. .++ .+..+++.++...... +-
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHH
Confidence 33333333211 24777777899999999999999999999954 234 2334566666666551 23
Q ss_pred CHHHHHHHHHHhcccCC-Ch--------HHhHHHHHHHHH-HHHHhccccCCCchhhHHHHHHHHHH---HhhcCc
Q 000205 703 DPMLAQSLCILLRWGAM-DA--------EAYSEASRTVLK-ILWDTGTTTHLGHELQWAKARASAFE---ALTQYE 765 (1860)
Q Consensus 703 rPlVlkSLCeLfp~gav-da--------eeYee~~~~VI~-~LW~~T~s~d~n~D~~~~rVrsAAy~---ALs~F~ 765 (1860)
+-..+.++..+|..+.. .+ .-|+.+..+-.. .++.+.+.. -..+|.|||+ +|+.|+
T Consensus 354 k~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-------F~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 354 KLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-------FPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-------chHHHHHHHHHHHHHhcCH
Confidence 66788888899855443 11 224444444444 555554321 1245777765 455555
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=83.56 E-value=3e+02 Score=41.78 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=104.9
Q ss_pred ccchhhhhcCCCCchhhHHHHHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcCcc------
Q 000205 3 SYSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKF------ 76 (1860)
Q Consensus 3 ~~~~l~~~t~vp~p~lq~~av~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g~l------ 76 (1860)
...+|++-.+...|..|+.|+.++|+=+... +.+ .-..+-.++.++++.+...+.+.|-++++.+.-
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~------d~~-~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTA------DAA-TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc------chh-HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 3557888888889999999999999644432 122 124466779999999999999988666552211
Q ss_pred --chhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHhhccccCCCccccCCCCCcceeecccCcc-hHHHHHHHHHHHHhh
Q 000205 77 --DLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNE-VHTELVQQVLLFMTQ 153 (1860)
Q Consensus 77 --d~~~~L~~L~s~L~~ss~r~~~~lvkaI~~Ll~l~~~r~~g~~~~~~~~~HPfIsiL~sr~d-~~~~LlqQV~~~~~q 153 (1860)
.-+.++..|...|...+++-..-...+|..+-...- ...+.-...---.|+|..|.++.+ ...+-..-+..+...
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~--d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ--DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh--HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 135688888887776666666555555555432111 101111122234799999998877 777777777777753
Q ss_pred cccccccchh--hhchhhhhhhhcc
Q 000205 154 NKHLGMVEVC--EFLRPFFNFSILR 176 (1860)
Q Consensus 154 ~~~~~~~~vi--efLrPFl~y~~c~ 176 (1860)
.++.-...++ +.++|+...+=+.
T Consensus 682 ~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 682 IKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 3322122333 4688877777544
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=79.58 E-value=10 Score=37.18 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh---------cccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHH
Q 000205 570 MIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI---------NDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHD 640 (1860)
Q Consensus 570 ~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk---------qdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRD 640 (1860)
.+|.++..+. +.++..+..++..+..+... +..++|.+.++|..+ ..++....+.++..
T Consensus 8 ~i~~l~~~l~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-------~~~v~~~a~~~L~~ 75 (120)
T cd00020 8 GLPALVSLLS-----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-------DEEVVKAALWALRN 75 (120)
T ss_pred ChHHHHHHHH-----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-------CHHHHHHHHHHHHH
Confidence 4455555544 24567777888887777765 346677777776652 45777888899999
Q ss_pred HhhcCCC-----cchhhHHHHHHhhccCchhHHHHhHHHHHHhhh
Q 000205 641 VCRKDPD-----RGVDLILSVAACIESRDPIIQALGLQSLAYLCE 680 (1860)
Q Consensus 641 ICk~rPd-----hG~DLL~~IS~Clks~~~~v~ALALdALssLCe 680 (1860)
+|...|. ....+++.+-+++++.+..+.-.++.++..||+
T Consensus 76 l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 76 LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 9987763 223467788888888888888899999998885
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=76.13 E-value=68 Score=43.58 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred CCCCchhhHHHHHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcC--ccchhh-hHHHHHhh
Q 000205 12 RVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADS--KFDLSL-GLLELQSA 88 (1860)
Q Consensus 12 ~vp~p~lq~~av~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g--~ld~~~-~L~~L~s~ 88 (1860)
.=+.|-.-|-|+.++++-.+..|+.. ++. .=.+-|..++..+||.|+..|+..|.+...++ .+++.. .+..|+..
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pelv-~~~-~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~ 227 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQLF-YQQ-DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYH 227 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcccc-ccc-chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 45789999999999996666677654 111 12356777999999999999999999987664 122221 11222222
Q ss_pred hcCCCc----------------------------------hhHHHHHHHHHHHHHhhccccCCCccc-cCC--CCCccee
Q 000205 89 LEGSDP----------------------------------KFVTLFVKALGYLVRLGFERFNGSWKL-GAT--ENHPFIK 131 (1860)
Q Consensus 89 L~~ss~----------------------------------r~~~~lvkaI~~Ll~l~~~r~~g~~~~-~~~--~~HPfIs 131 (1860)
|...++ +|-++...++--++.+.-.- ..... ++. -.-|+|+
T Consensus 228 L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~ 305 (746)
T PTZ00429 228 LPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--SQELIERCTVRVNTALLT 305 (746)
T ss_pred hhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHH
Confidence 222111 12222222222222221000 00000 000 1158899
Q ss_pred ecccCcchHHHHHHHHHHHHhhcccccccchhhhchhhhhhhhccCCCCCchhhHHHH-HHHHhhhhhcCCCCCCchhHH
Q 000205 132 ILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVR-QLVSSVASLCCSFPSDALPVF 210 (1860)
Q Consensus 132 iL~sr~d~~~~LlqQV~~~~~q~~~~~~~~viefLrPFl~y~~c~~P~~~~~~~~~~r-~Ll~slas~~~S~~~~al~vl 210 (1860)
++++.++.+-..++.|..+++.++ +.+.|.+...||+ + +++......+ .++-.++ ++ -.+-
T Consensus 306 L~ss~~eiqyvaLr~I~~i~~~~P--------~lf~~~~~~Ff~~-~-~Dp~yIK~~KLeIL~~La-----ne---~Nv~ 367 (746)
T PTZ00429 306 LSRRDAETQYIVCKNIHALLVIFP--------NLLRTNLDSFYVR-Y-SDPPFVKLEKLRLLLKLV-----TP---SVAP 367 (746)
T ss_pred hhCCCccHHHHHHHHHHHHHHHCH--------HHHHHHHHhhhcc-c-CCcHHHHHHHHHHHHHHc-----Cc---ccHH
Confidence 988889999999999998888765 3456677777777 2 3333221111 1122222 11 2244
Q ss_pred HHHHhhhcccCCcchHHHhhh
Q 000205 211 EVLRGCLEYLPLKNSKEQRNL 231 (1860)
Q Consensus 211 kLL~e~L~~l~~~d~e~~~e~ 231 (1860)
+++-|...|...-|.+-+++.
T Consensus 368 ~IL~EL~eYa~d~D~ef~r~a 388 (746)
T PTZ00429 368 EILKELAEYASGVDMVFVVEV 388 (746)
T ss_pred HHHHHHHHHhhcCCHHHHHHH
Confidence 555677777775566544443
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=64.62 E-value=8.1e+02 Score=37.66 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=75.1
Q ss_pred HHHHHhhhhhhcc---------CcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh---------cccchhhHHhh
Q 000205 554 LPKLLGMLPSIAS---------QSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI---------NDRAFGSLQGV 615 (1860)
Q Consensus 554 ~l~LL~tLPsLA~---------hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk---------qdRafP~LQ~l 615 (1860)
.-...++|.++.. |...+++.++.+. + .+...+.-+...+..+=.. +.-+.|.|-++
T Consensus 380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~-~----~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~L 454 (2102)
T PLN03200 380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLIT-M----ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISL 454 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhc-c----CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHH
Confidence 4555666644333 4466777777776 3 2334455555544333333 23378888888
Q ss_pred hcCcCCCCccchhhHHHHHHHHHHHHhhcCCC-c----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhc
Q 000205 616 LQPKLLIDFKSERNICISIAASIHDVCRKDPD-R----GVDLILSVAACIESRDPIIQALGLQSLAYLCEA 681 (1860)
Q Consensus 616 L~~s~~~~~~~ewEv~IArAasIRDICk~rPd-h----G~DLL~~IS~Clks~~~~v~ALALdALssLCea 681 (1860)
|..+ ..+.+...+.+++-++..+++ . ....|+++-+.+++.++.++--|.-+|..||.+
T Consensus 455 L~s~-------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~ 518 (2102)
T PLN03200 455 LGLS-------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH 518 (2102)
T ss_pred HcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 8863 223444556778888877765 2 246788888899888888888899999999963
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=63.66 E-value=19 Score=34.17 Aligned_cols=84 Identities=26% Similarity=0.367 Sum_probs=59.2
Q ss_pred HHHHh-hccCccchhhHHHHHHhhhhhccCccchhhhhhHHHHHHhhhhccccccchhHHHHhhhhhccccccchhHHHH
Q 000205 944 LMRVA-EESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQ 1022 (1860)
Q Consensus 944 ~ik~a-~~ssP~v~gNsiLAL~gLa~~v~~~~h~v~ssas~fLl~wL~q~eh~h~qwsAaisLGll~~slh~tD~k~k~~ 1022 (1860)
+++.. +...|.++.+++.+||-+ -...+...|.+.+ ++++..-++.|+.+||-+- .-+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~----------~~~ 62 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELL-KDEDPMVRRAAARALGRIG----------DPE 62 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH----------HHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC----------CHH
Confidence 34433 688899999999999933 1246677888877 4455555577777888651 234
Q ss_pred HHHHHHHHHhcccccceechhhhhhH
Q 000205 1023 NITGLLEVLSSSRSILVRGACGIGLG 1048 (1860)
Q Consensus 1023 ~Is~Ll~vls~s~S~~Vkgacgl~LG 1048 (1860)
.+-.|.+.+.++++..|+-+|.-+||
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 66777778888888888988888887
No 20
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.33 E-value=67 Score=43.34 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=100.7
Q ss_pred chhHHHHHHHHhhcccCccC------Ccch-HHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHH---
Q 000205 530 VPLLLAILFYSNMFTRKDVV------CQNK-LPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLC--- 599 (1860)
Q Consensus 530 vp~Ll~VL~fkL~~~k~~e~------~p~l-~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLt--- 599 (1860)
.+.++|+|+-++ +|.++. +|.+ .-.+|+.++....++ .+|.|+-+|..-+. +|..|-.-.--|+
T Consensus 317 ~~~v~P~Ll~~L--~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~---~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 317 LQDVVPVLLELL--TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQ---NPDWRNREAAVMAFGS 390 (859)
T ss_pred HhHhhHHHHHHH--HhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcC---CcchhhhhHHHHHHHh
Confidence 456778888777 553331 1222 344566666666555 47789999874443 3333322222221
Q ss_pred --------HHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC--cchhhHHHHHH-hhccCchhHH
Q 000205 600 --------QTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD--RGVDLILSVAA-CIESRDPIIQ 668 (1860)
Q Consensus 600 --------kLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd--hG~DLL~~IS~-Clks~~~~v~ 668 (1860)
++=.+-..+-|.+-.++.++.. | +.=+.|-++-.||..-|+ -.++.+..+.. |.+.
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl------~-VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g------ 457 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDPSL------W-VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG------ 457 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCchh------h-hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH------
Confidence 2223344566677766664321 2 223556678888888886 34444444432 2222
Q ss_pred HHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccC-------CC---hHHhHHHHHHHHHHHHHh
Q 000205 669 ALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGA-------MD---AEAYSEASRTVLKILWDT 738 (1860)
Q Consensus 669 ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~ga-------vd---aeeYee~~~~VI~~LW~~ 738 (1860)
..+.|.|...-|+=|..++ ++ ++.+..+...+|+.|=..
T Consensus 458 -------------------------------L~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 458 -------------------------------LNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred -------------------------------hhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 1336666666666653221 11 123447788899999888
Q ss_pred ccccCCCchhhHHHHHHHHHHHhhc
Q 000205 739 GTTTHLGHELQWAKARASAFEALTQ 763 (1860)
Q Consensus 739 T~s~d~n~D~~~~rVrsAAy~ALs~ 763 (1860)
|...|.|.. ..|++||+||.+
T Consensus 507 tdr~dgnqs----NLR~AAYeALmE 527 (859)
T KOG1241|consen 507 TDRADGNQS----NLRSAAYEALME 527 (859)
T ss_pred ccccccchh----hHHHHHHHHHHH
Confidence 876553322 349999999974
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=55.62 E-value=98 Score=34.95 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHHHHHHhhcccchhhH-HhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCC------C-cc--hhhHH
Q 000205 585 NAKPVLYATATRLLCQTWEINDRAFGSL-QGVLQPKLLIDFKSERNICISIAASIHDVCRKDP------D-RG--VDLIL 654 (1860)
Q Consensus 585 ~s~~~LrA~ALRLLtkLWkkqdRafP~L-Q~lL~~s~~~~~~~ewEv~IArAasIRDICk~rP------d-hG--~DLL~ 654 (1860)
+++..++.-|.+.+..+|+.-+ ..|.+ ...+.... .+....++...+..+..+....| + ++ .++++
T Consensus 105 ~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~---~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~ 180 (228)
T PF12348_consen 105 DSKKFIREAANNALDAIIESCS-YSPKILLEILSQGL---KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK 180 (228)
T ss_dssp ---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHT---T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH
Confidence 3566778888888888888766 22333 33333211 12356677778888888888877 2 22 46888
Q ss_pred HHHHhhccCchhHHHHhHHHHHHhhh
Q 000205 655 SVAACIESRDPIIQALGLQSLAYLCE 680 (1860)
Q Consensus 655 ~IS~Clks~~~~v~ALALdALssLCe 680 (1860)
.|..|+.+.++.+-..|-+++..+.+
T Consensus 181 ~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 181 ALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999888833
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=54.52 E-value=44 Score=31.75 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=60.2
Q ss_pred hhhhhc-CCCCchhhHHHHHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcCccchhhhHHH
Q 000205 6 PLLEKA-RVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLE 84 (1860)
Q Consensus 6 ~l~~~t-~vp~p~lq~~av~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g~ld~~~~L~~ 84 (1860)
.|++.. .=|.|.+++.|+-.+- ++ ..+..-+.|..+++++||.|...|+++|-++ .-.+++..
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~-~~---------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------~~~~~~~~ 66 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG-EL---------GDPEAIPALIELLKDEDPMVRRAAARALGRI------GDPEAIPA 66 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH-CC---------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCC------HHHHTHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH-Hc---------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh------CCHHHHHH
Confidence 356666 6788999988777665 22 2346678889999999999999999999876 34668888
Q ss_pred HHhhhcCCCchhH-HHHHHHHH
Q 000205 85 LQSALEGSDPKFV-TLFVKALG 105 (1860)
Q Consensus 85 L~s~L~~ss~r~~-~~lvkaI~ 105 (1860)
|..++...+...+ ...++++|
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhcC
Confidence 8888877654443 44555543
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=53.12 E-value=91 Score=34.66 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHH-HHHHHhhcCCCCCHHHH
Q 000205 629 NICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAW-DVIAKHMLDYSLDPMLA 707 (1860)
Q Consensus 629 Ev~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAW-kVLa~KL~~~~~rPlVl 707 (1860)
.++.....++-|.|...|.-=+..++.+..|+.++++.+.--|+-.|+.|-.+|-+-+...- ..+..-+. |.+|.|.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~--D~~~~Ir 80 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV--DENPEIR 80 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc--CCCHHHH
Confidence 45566778899999999986777899999999999999999999999999999998888775 44444453 6789998
Q ss_pred HHHHHHhcccCC--ChHHhHHHHHHHHHHH
Q 000205 708 QSLCILLRWGAM--DAEAYSEASRTVLKIL 735 (1860)
Q Consensus 708 kSLCeLfp~gav--daeeYee~~~~VI~~L 735 (1860)
.....||..... +.+.+....-++|..|
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 888888853332 2344433344444433
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=45.91 E-value=5.6e+02 Score=33.10 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhHhcCCCcc-chHHHHHHHHHccCCCCCc---hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccC-
Q 000205 493 MSMLLGAIASVLVIHPSLG-SSAVDAFATVGKMDPKLGV---PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQ- 567 (1860)
Q Consensus 493 ~p~~L~LlLsaLLlh~s~~-~~al~~L~~L~k~dP~qav---p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~h- 567 (1860)
....+.-+...+-..++.+ +-+.+++.++......... +.++.-|.-.+..-.++++||..-+.+.+++..+-..
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 3445555555555544432 3355555554333222221 3334434433333345678999999999999777432
Q ss_pred ----c--------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcc-c----chhhHHhhhcCcCCCCccchhhH
Q 000205 568 ----S--------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIND-R----AFGSLQGVLQPKLLIDFKSERNI 630 (1860)
Q Consensus 568 ----k--------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqd-R----afP~LQ~lL~~s~~~~~~~ewEv 630 (1860)
. ..+|+...+ |. ++=....|-+..++..+-+.++ . .|-.|-..|... .-||.
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~I----Lq-~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p------~lWe~ 172 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEI----LQ-QDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP------ALWER 172 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHH----HH-TT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG------GGGGS
T ss_pred cCCChhHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc------chhcc
Confidence 1 233444444 43 2345678889999999999887 3 333333333322 24552
Q ss_pred ---HHHHHHHHHHHhhcCCCc------chhhHHHHHHhhccC-chhHHHHhHHHHHHhhhccccchH--HHHHHHHHhhc
Q 000205 631 ---CISIAASIHDVCRKDPDR------GVDLILSVAACIESR-DPIIQALGLQSLAYLCEADVIDFY--TAWDVIAKHML 698 (1860)
Q Consensus 631 ---~IArAasIRDICk~rPdh------G~DLL~~IS~Clks~-~~~v~ALALdALssLCeaDVVDf~--SAWkVLa~KL~ 698 (1860)
.=|.+.-++...+.+|.. =.-++.-.++|+.++ +..-.---|++|-.-|..++++-| +-|..+=.|+.
T Consensus 173 ~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 173 RGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp TTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 234444555666677752 134455556788776 344444568999999999988765 67899999999
Q ss_pred CCCCCHHHHHHHHHHhcccCC--------C--hHHhHHHHHHHHHHHHHhccc
Q 000205 699 DYSLDPMLAQSLCILLRWGAM--------D--AEAYSEASRTVLKILWDTGTT 741 (1860)
Q Consensus 699 ~~~~rPlVlkSLCeLfp~gav--------d--aeeYee~~~~VI~~LW~~T~s 741 (1860)
+ .+-+...+.++.|+..... + ..-.+.....+++.+|--+..
T Consensus 253 ~-skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~ 304 (435)
T PF03378_consen 253 S-SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQ 304 (435)
T ss_dssp H-C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGG
T ss_pred h-CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchh
Confidence 8 7789999999999842221 1 122455677888888865443
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=45.36 E-value=1.4e+02 Score=33.68 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=60.3
Q ss_pred cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhc-----ccCCChH
Q 000205 648 RGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLR-----WGAMDAE 722 (1860)
Q Consensus 648 hG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp-----~gavdae 722 (1860)
+...+++.+=++..+.+..+...|.++|..+|++-.......-..+..-.. .++|.+....++++. ++ .+..
T Consensus 91 ~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~-~~~~ 167 (228)
T PF12348_consen 91 YADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKWG-SDSS 167 (228)
T ss_dssp HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT------G
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHcc-chHh
Confidence 456677777677777788888899999999998644112112344444443 568888888777772 22 1122
Q ss_pred Hh--HHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 723 AY--SEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 723 eY--ee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
.. .....+++..+=......+ + .||.+|-+++..|
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~----~---~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDAD----P---EVREAARECLWAL 204 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-----H---HHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCC----H---HHHHHHHHHHHHH
Confidence 22 2234666666666554332 3 5688888888777
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=41.04 E-value=48 Score=32.47 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=60.2
Q ss_pred cchhhhhcCCCCchhhHHHHHHHHHhhhcC-CCCCCCC-CchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcCccc----
Q 000205 4 YSPLLEKARVPQPSLQKFAVVSIFSKLRTS-PAHLGPD-SEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFD---- 77 (1860)
Q Consensus 4 ~~~l~~~t~vp~p~lq~~av~s~f~~l~~~-p~~~~~~-~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g~ld---- 77 (1860)
...|++..+=++|.+.+-|+..+. .+... |+....- ...+=+.+..++.++++.|...|+..|.+|+.++.-.
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALS-NLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHH-HHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 345666666677888888887766 45543 4332110 2366778888999999999999999999999876311
Q ss_pred -hhhhHHHHHhhhcCCCch
Q 000205 78 -LSLGLLELQSALEGSDPK 95 (1860)
Q Consensus 78 -~~~~L~~L~s~L~~ss~r 95 (1860)
-+.++..|+..|...+.+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~ 106 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNED 106 (120)
T ss_pred HHCCChHHHHHHHhcCCHH
Confidence 122566666655544433
No 27
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.76 E-value=7.5e+02 Score=29.84 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHhhcCC----C---------cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccch-HHHHHH
Q 000205 627 ERNICISIAASIHDVCRKDP----D---------RGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDF-YTAWDV 692 (1860)
Q Consensus 627 ewEv~IArAasIRDICk~rP----d---------hG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf-~SAWkV 692 (1860)
+.++.+....++-|+-..++ + .+.+++..+.+.++++++.+++.|.||++-|-=++.++- ......
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~ 156 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSR 156 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 55666666666666666544 1 234566666788999999999999999999999999988 444433
Q ss_pred H-HHhhcC-CCCCHHHHHHHHHHhcccCCChHHh-HHHHHHHHHHHHHh
Q 000205 693 I-AKHMLD-YSLDPMLAQSLCILLRWGAMDAEAY-SEASRTVLKILWDT 738 (1860)
Q Consensus 693 L-a~KL~~-~~~rPlVlkSLCeLfp~gavdaeeY-ee~~~~VI~~LW~~ 738 (1860)
| -..+.. ...++.+.+.+.-|||..+....++ +.+.+.++..++.+
T Consensus 157 Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~ 205 (298)
T PF12719_consen 157 LLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTL 205 (298)
T ss_pred HHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3 222332 2557899999999999777665543 33444455555554
No 28
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=17 Score=48.23 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=45.6
Q ss_pred hhhHHHHHHhhhhccccccchhHHHHhhhhhccccccchhHHHHHHHHHHHHHhcccccceechhhhhhHHhhhh
Q 000205 979 STASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQD 1053 (1860)
Q Consensus 979 ssas~fLl~wL~q~eh~h~qwsAaisLGll~~slh~tD~k~k~~~Is~Ll~vls~s~S~~Vkgacgl~LG~~c~~ 1053 (1860)
..|++-||----.+-++.=++.|-++||++...= | +-.-+.+..|+++-+.+|.-+++++||++|.+
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-p-------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-P-------EQLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecC-h-------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 3455554444222345566678888999876443 3 22335566788999999999999999999983
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=37.75 E-value=2.2e+02 Score=37.87 Aligned_cols=221 Identities=11% Similarity=0.030 Sum_probs=124.6
Q ss_pred CccchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcc-hHHHHHhhh-hhhccCcccHHHHHHHHHHhhhcC-
Q 000205 509 SLGSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQN-KLPKLLGML-PSIASQSVMIPLVVQTILPMLHKN- 585 (1860)
Q Consensus 509 s~~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~-l~l~LL~tL-PsLA~hk~~iP~VLrtL~pmLsk~- 585 (1860)
+.++.+.+++..++....---+..++|.|.-.+ . +|. -..+.+++| ..=.+|.+ -++-+..|-|.|..+
T Consensus 310 evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l----~---dp~~~~~e~~~~L~~ttFV~~V-~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL----A---DPSCYTPECLDSLGATTFVAEV-DAPSLALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----c---CcccchHHHHHhhcceeeeeee-cchhHHHHHHHHHHHH
Confidence 345667888888765432222466778877776 2 222 333444433 11222221 223344444444332
Q ss_pred -----CCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC---cc-hhhHHHH
Q 000205 586 -----AKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD---RG-VDLILSV 656 (1860)
Q Consensus 586 -----s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd---hG-~DLL~~I 656 (1860)
+..+..+..+.-||++|+-.-++-|+|..++-.=...-.+.--|+ |+-+.|..|...-+ .+ .|.++.+
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv---R~vaarAL~~l~e~~g~~~f~d~~p~l 458 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV---RAVAARALGALLERLGEVSFDDLIPEL 458 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH---HHHHHHHHHHHHHHHHhhcccccccHH
Confidence 234567788999999998888888888887743100000011222 33334444332221 11 4566666
Q ss_pred H----HhhccCchhHHHHhHHHHHHhhhccccchHHHH-HHHHHhhcCCCCCHHHHHHHHHHhcccCCC-hHHhHHHHHH
Q 000205 657 A----ACIESRDPIIQALGLQSLAYLCEADVIDFYTAW-DVIAKHMLDYSLDPMLAQSLCILLRWGAMD-AEAYSEASRT 730 (1860)
Q Consensus 657 S----~Clks~~~~v~ALALdALssLCeaDVVDf~SAW-kVLa~KL~~~~~rPlVlkSLCeLfp~gavd-aeeYee~~~~ 730 (1860)
+ .|..+.+.. -+.+++.+.|+..-++-+-.| ..+-.........|.+...+..||.....- ...++....+
T Consensus 459 ~e~~~~~k~~~~~~---g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~ 535 (569)
T KOG1242|consen 459 SETLTSEKSLVDRS---GAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHE 535 (569)
T ss_pred HHhhccchhhhhhH---HHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHH
Confidence 5 343333333 446789999999999998888 333333333366777888888888654433 4567777888
Q ss_pred HHHHHHHhccccC
Q 000205 731 VLKILWDTGTTTH 743 (1860)
Q Consensus 731 VI~~LW~~T~s~d 743 (1860)
+++....-..+.+
T Consensus 536 i~~~~~k~~ad~d 548 (569)
T KOG1242|consen 536 ILDEFLKGLADND 548 (569)
T ss_pred HHHHHHHHhhhcC
Confidence 8888777655443
No 30
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=37.67 E-value=6e+02 Score=35.16 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCCCchhHHHHHHHHHHHhh--cccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC--cchhhHHHHHHhh
Q 000205 585 NAKPVLYATATRLLCQTWEI--NDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD--RGVDLILSVAACI 660 (1860)
Q Consensus 585 ~s~~~LrA~ALRLLtkLWkk--qdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd--hG~DLL~~IS~Cl 660 (1860)
+.++-+|.+|||-|+.+=.+ -+-+++-+++.+... .-.++-..|-|+.++=+.+|+ |+.-++-....-.
T Consensus 103 d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~-------~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~ 175 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP-------HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELV 175 (757)
T ss_pred CCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC-------cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHh
Confidence 58999999999999976433 244566666666542 347888899999999999997 5555777777788
Q ss_pred ccCchhHHHHhHHHHHHhhhccccc
Q 000205 661 ESRDPIIQALGLQSLAYLCEADVID 685 (1860)
Q Consensus 661 ks~~~~v~ALALdALssLCeaDVVD 685 (1860)
.+.+|.+.|-|+-+++.++.-....
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e~a~~ 200 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPELAHG 200 (757)
T ss_pred hCCCchHHHHHHHHHHHhchhhhhh
Confidence 7889999999999999999863333
No 31
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=37.31 E-value=4.8e+02 Score=29.55 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=89.7
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHHHhhcCccchhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHhhccccCCCccccCCC
Q 000205 46 DAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATE 125 (1860)
Q Consensus 46 eal~~~l~S~~~~v~~~av~~L~rLv~~g~ld~~~~L~~L~s~L~~ss~r~~~~lvkaI~~Ll~l~~~r~~g~~~~~~~~ 125 (1860)
+-|-.+|-|+++.|...|++-+---+..|..-+.+.++.|++ |+.+.-..+ .....-++..+..|
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA-L~ts~~~~i----r~~A~~~l~~l~eK---------- 75 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA-LETSPNPSI----RSRAYQLLKELHEK---------- 75 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh-hhCCCChHH----HHHHHHHHHHHHHH----------
Confidence 345669999999999999998888888899999999999999 666532222 22222222222222
Q ss_pred CCcceeecccCcchHHHHHHHHHHHHhhcc-----ccc--ccchhhhchhhhhhhhccCCCCCchhhHHHHHHHHhhhhh
Q 000205 126 NHPFIKILSSRNEVHTELVQQVLLFMTQNK-----HLG--MVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASL 198 (1860)
Q Consensus 126 ~HPfIsiL~sr~d~~~~LlqQV~~~~~q~~-----~~~--~~~viefLrPFl~y~~c~~P~~~~~~~~~~r~Ll~slas~ 198 (1860)
|| ++ .-..+.+=|..-+.-+. .++ +.....+++. +|.+++ +.. +.|..|.+.|+...-..
T Consensus 76 -~~--s~------v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~--ly~ll~-~~r-~~R~~Fl~~l~k~f~~~ 142 (187)
T PF12830_consen 76 -HE--SL------VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSR--LYSLLR-SNR-KSRRKFLKSLLKQFDFD 142 (187)
T ss_pred -hH--HH------HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHH--HHHHHh-ccc-HhHHHHHHHHHHHHHhh
Confidence 11 01 11112222222111111 110 0013334433 356666 433 55888988888775432
Q ss_pred cC----CCCCCchhHHHHHHhhhcccCCcchHHH
Q 000205 199 CC----SFPSDALPVFEVLRGCLEYLPLKNSKEQ 228 (1860)
Q Consensus 199 ~~----S~~~~al~vlkLL~e~L~~l~~~d~e~~ 228 (1860)
.. ....+-+.-+..+++.|-+++-+..|+.
T Consensus 143 ~~~~~~~~~~~~l~~~~Fla~nLA~l~y~~~~E~ 176 (187)
T PF12830_consen 143 LTKLSSESSPSDLDFLLFLAENLATLPYQTQDEV 176 (187)
T ss_pred ccccccccchhHHHHHHHHHHHHhcCCCCChhHH
Confidence 21 1112236678889999999999998876
No 32
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=35.74 E-value=5.7e+02 Score=31.44 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhcCCC------cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhc-----cccchHHHH-HHHHHhh
Q 000205 630 ICISIAASIHDVCRKDPD------RGVDLILSVAACIESRDPIIQALGLQSLAYLCEA-----DVIDFYTAW-DVIAKHM 697 (1860)
Q Consensus 630 v~IArAasIRDICk~rPd------hG~DLL~~IS~Clks~~~~v~ALALdALssLCea-----DVVDf~SAW-kVLa~KL 697 (1860)
.+.+.-..|.++++.++- +-.+++..+-+|++...+.-+++|+.++.-||=. +.-++|..- .+|.+-+
T Consensus 59 ~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l 138 (309)
T PF05004_consen 59 TREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRIL 138 (309)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 344445556666655551 3345566666888876667788888888888655 344554433 4566656
Q ss_pred cCCCCCHHHHH------HHHHHhcccCCChHHhHHHHHHHHHHHHHhc--cccCC------CchhhHHHHHHHHHHHhhc
Q 000205 698 LDYSLDPMLAQ------SLCILLRWGAMDAEAYSEASRTVLKILWDTG--TTTHL------GHELQWAKARASAFEALTQ 763 (1860)
Q Consensus 698 ~~~~~rPlVlk------SLCeLfp~gavdaeeYee~~~~VI~~LW~~T--~s~d~------n~D~~~~rVrsAAy~ALs~ 763 (1860)
.+....|.+.. ++|.|++ ..+.++++ ...+.++.+|... ..+.. +.++.++..+-.||.-|..
T Consensus 139 ~d~s~~~~~R~~~~~aLai~~fv~--~~d~~~~~-~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt 215 (309)
T PF05004_consen 139 TDSSASPKARAACLEALAICTFVG--GSDEEETE-ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLT 215 (309)
T ss_pred hCCccchHHHHHHHHHHHHHHHhh--cCChhHHH-HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHh
Confidence 65333444522 3344543 23444442 2347788777743 22211 1134444555666655542
Q ss_pred Cc-cccc----ccccCCcccchHHHHHhccChHHHHHHHHHHHHHHHHHHhh
Q 000205 764 YE-VSHI----DKNILDFKQRSFEILISETNPVVLRAMEGFQVKIITHEHSN 810 (1860)
Q Consensus 764 F~-Ie~L----pe~iPd~~gs~y~qLLsetn~sVL~A~eeLLtslIk~E~~~ 810 (1860)
.- ...+ .+.+| ....+|...+.+|+-|+++-++-+ +|+..
T Consensus 216 ~~~~~~~~~~~~~~~~-----~l~~lL~s~d~~VRiAAGEaiAll--~E~~~ 260 (309)
T PF05004_consen 216 TLPDSKLEDLLEEALP-----ALSELLDSDDVDVRIAAGEAIALL--YELAR 260 (309)
T ss_pred cCCHHHHHHHHHHHHH-----HHHHHhcCCCHHHHHHHHHHHHHH--HHHhh
Confidence 21 1111 11122 456678888899999999988444 66643
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.41 E-value=4.6e+02 Score=35.73 Aligned_cols=235 Identities=17% Similarity=0.152 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccHHHHHHHH---HHhhhcCCC
Q 000205 511 GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTI---LPMLHKNAK 587 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL---~pmLsk~s~ 587 (1860)
++.++..++-+...-|..=+|+|--+.=|-+-.++.+ |.++.++-.+-.-++|..+.|-..+...+ -|+|-.+
T Consensus 232 Rk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~-- 307 (885)
T KOG2023|consen 232 RKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG-- 307 (885)
T ss_pred HHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc--
Confidence 4779999999888777765799999999988556644 77788888888888888886543322222 2333211
Q ss_pred CchhHHHHHHHH-----------------HHHhhcccchhhHHhhhcCcC-CC---C---ccchhhHHHHHHHHHHHHhh
Q 000205 588 PVLYATATRLLC-----------------QTWEINDRAFGSLQGVLQPKL-LI---D---FKSERNICISIAASIHDVCR 643 (1860)
Q Consensus 588 ~~LrA~ALRLLt-----------------kLWkkqdRafP~LQ~lL~~s~-~~---~---~~~ewEv~IArAasIRDICk 643 (1860)
-+-.-.-+-|+- |.-|.-.+.-+..++ +++ .- + ...+|..+-..|+++-=.--
T Consensus 308 M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~---~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 308 MVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD---DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred CccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc---cccccccccccccccccccHhhccHHHHHHHHH
Confidence 000000111111 111111111122210 100 00 0 01257777666666654443
Q ss_pred cCCCcchhhHHHH----HHhhccCc---hhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCC--CCCHHHHHHHHHHh
Q 000205 644 KDPDRGVDLILSV----AACIESRD---PIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY--SLDPMLAQSLCILL 714 (1860)
Q Consensus 644 ~rPdhG~DLL~~I----S~Clks~~---~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~--~~rPlVlkSLCeLf 714 (1860)
.- |.|+++.+ .+-+.+++ -.+.-+|+-||++=|-.+.++-.+ .|-|.+..+ ++.|+|..=-|.=+
T Consensus 385 vf---~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp---eLip~l~~~L~DKkplVRsITCWTL 458 (885)
T KOG2023|consen 385 VF---GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP---ELIPFLLSLLDDKKPLVRSITCWTL 458 (885)
T ss_pred hh---HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH---HHHHHHHHHhccCccceeeeeeeeH
Confidence 33 44555444 45444432 245668899999999999998777 344443321 78899988888877
Q ss_pred cccC--CChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 715 RWGA--MDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 715 p~ga--vdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
+..+ +-.++-.++...++.-|=+-...+++ +|-.||..|.+.|+
T Consensus 459 sRys~wv~~~~~~~~f~pvL~~ll~~llD~NK-------~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 459 SRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK-------KVQEAACSAFATLE 504 (885)
T ss_pred hhhhhhHhcCChHhhhHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHH
Confidence 4322 11222445556666666554443332 67888888888776
No 34
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.99 E-value=53 Score=43.97 Aligned_cols=146 Identities=19% Similarity=0.243 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHH---hhh----hhhccCcccHHHHHHHHHHhhh
Q 000205 511 GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLL---GML----PSIASQSVMIPLVVQTILPMLH 583 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL---~tL----PsLA~hk~~iP~VLrtL~pmLs 583 (1860)
+-.|+.++.++++.+|..-.+ +..+||+++-++.+ | =+..+++ .+| |.|+. --+|++...|.+
T Consensus 198 ~SAAV~VICELArKnPknyL~--LAP~ffkllttSsN--N-WmLIKiiKLF~aLtplEPRLgK--KLieplt~li~s--- 267 (877)
T KOG1059|consen 198 VSAAVSVICELARKNPQNYLQ--LAPLFYKLLVTSSN--N-WVLIKLLKLFAALTPLEPRLGK--KLIEPITELMES--- 267 (877)
T ss_pred HHHHHHHHHHHHhhCCccccc--ccHHHHHHHhccCC--C-eehHHHHHHHhhccccCchhhh--hhhhHHHHHHHh---
Confidence 456889999999999998655 45557777666644 3 3333333 333 44442 335555555542
Q ss_pred cCCCCchhHHHHHHHHHH----Hhh-----c-------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC
Q 000205 584 KNAKPVLYATATRLLCQT----WEI-----N-------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD 647 (1860)
Q Consensus 584 k~s~~~LrA~ALRLLtkL----Wkk-----q-------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd 647 (1860)
+.|+.|+++= ... - .-+...|..++.+++ + ...+=---++..|-+.+|.
T Consensus 268 --------T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsD------q-NLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 268 --------TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSD------Q-NLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred --------hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCC------c-cHHHHHHHHHHHHhhhCHH
Confidence 1222222221 111 0 012344455555432 1 1222234567778888885
Q ss_pred cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhc
Q 000205 648 RGVDLILSVAACIESRDPIIQALGLQSLAYLCEA 681 (1860)
Q Consensus 648 hG~DLL~~IS~Clks~~~~v~ALALdALssLCea 681 (1860)
.=..---.|=+|+++.++.+---|||=++.+..-
T Consensus 333 ~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 333 AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 3333333445799999999888888888877654
No 35
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.11 E-value=1.8e+02 Score=40.98 Aligned_cols=170 Identities=21% Similarity=0.251 Sum_probs=86.2
Q ss_pred cccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhccc---------chhhHHhhhcCcCC---CCccchhhHHHHHH
Q 000205 568 SVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDR---------AFGSLQGVLQPKLL---IDFKSERNICISIA 635 (1860)
Q Consensus 568 k~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdR---------afP~LQ~lL~~s~~---~~~~~ewEv~IArA 635 (1860)
+.-+|+|||+|. +...|-.||+||.|--.--++ +||+..|+|..+.. +....-| ||-
T Consensus 471 PeQLPiVLQVLL-------SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIW----AKI 539 (1387)
T KOG1517|consen 471 PEQLPIVLQVLL-------SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIW----AKI 539 (1387)
T ss_pred hHhcchHHHHHH-------HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHH----HHH
Confidence 466899999976 345688999999987554444 69999998875321 1122344 333
Q ss_pred HHHHHHhhcCC--Ccchh-hHHHHH--HhhccCchhHHHHhHHHHHHhhhc-----------cccchHHHHHHHHHhhcC
Q 000205 636 ASIHDVCRKDP--DRGVD-LILSVA--ACIESRDPIIQALGLQSLAYLCEA-----------DVIDFYTAWDVIAKHMLD 699 (1860)
Q Consensus 636 asIRDICk~rP--dhG~D-LL~~IS--~Clks~~~~v~ALALdALssLCea-----------DVVDf~SAWkVLa~KL~~ 699 (1860)
-++-.-|..+= |.|.. ++..++ .-..++.-+.+|-.| +.+|.+ +.+.++. .++.+
T Consensus 540 LAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL---Aviv~nf~lGQ~acl~~~li~iCl------e~lnd 610 (1387)
T KOG1517|consen 540 LAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL---AVIVRNFKLGQKACLNGNLIGICL------EHLND 610 (1387)
T ss_pred HhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHH---HHHHcccchhHHHhccccHHHHHH------HHhcC
Confidence 44444444322 11111 000010 111112223333333 333332 1111111 12222
Q ss_pred CCCCHHHHHHHHHHhcccC--CChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 700 YSLDPMLAQSLCILLRWGA--MDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 700 ~~~rPlVlkSLCeLfp~ga--vdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
+..|+..+=+|-.++.+= .+.+.+......+.+.|...-. |+ +++||.||.=||+.|-
T Consensus 611 -~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls--D~-----vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 611 -DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS--DP-----VPEVRAAAVFALGTFL 670 (1387)
T ss_pred -CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc--Cc-----cHHHHHHHHHHHHHHh
Confidence 235777777777775322 2333344445555555555432 22 3578999999999886
No 36
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.79 E-value=4.9e+02 Score=34.81 Aligned_cols=151 Identities=16% Similarity=0.099 Sum_probs=86.6
Q ss_pred CchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcCccchhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHhhccccCCCcc
Q 000205 41 SEPGRDAITQCLNSSSPAVVDQTVREFCRLVADSKFDLSLGLLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWK 120 (1860)
Q Consensus 41 ~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g~ld~~~~L~~L~s~L~~ss~r~~~~lvkaI~~Ll~l~~~r~~g~~~ 120 (1860)
++.+=+|+.-+|..+...|=.+|.+.|-.+..+..=-+......|.-.|..-++.-+...-+++..|+.++-+.
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~------ 130 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG------ 130 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH------
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH------
Confidence 56777778888888999988899998888888866666777777777565557778888888888888776422
Q ss_pred ccCCCCCcceeecccCcchHHHHHHHHHHHHhhcccccccchhhhchhhhhhhhccCCCCCchhhHHHHHHHHhhhhhcC
Q 000205 121 LGATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHLGMVEVCEFLRPFFNFSILRMPFSDSLSSLFVRQLVSSVASLCC 200 (1860)
Q Consensus 121 ~~~~~~HPfIsiL~sr~d~~~~LlqQV~~~~~q~~~~~~~~viefLrPFl~y~~c~~P~~~~~~~~~~r~Ll~slas~~~ 200 (1860)
+-..+..||..- ...++..+..+++||+=-+.=+--++=...++...|...++..+.. .+
T Consensus 131 ------------------tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~-DV 190 (556)
T PF05918_consen 131 ------------------TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ-DV 190 (556)
T ss_dssp ------------------HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT-T-
T ss_pred ------------------HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH-hc
Confidence 233444444311 1234445677888875332221111000114577888888876553 22
Q ss_pred CCCCCchhHHHHHHhhhcccCC
Q 000205 201 SFPSDALPVFEVLRGCLEYLPL 222 (1860)
Q Consensus 201 S~~~~al~vlkLL~e~L~~l~~ 222 (1860)
+.- =+.++|+.|.++..
T Consensus 191 Tae-----EF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 191 TAE-----EFELFMSLLKSLKI 207 (556)
T ss_dssp -HH-----HHHHHHHHHHTSGG
T ss_pred cHH-----HHHHHHHHHHhCcc
Confidence 322 36777777777766
No 37
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.82 E-value=1.3e+03 Score=29.87 Aligned_cols=208 Identities=13% Similarity=0.154 Sum_probs=110.0
Q ss_pred HHHHHHhHhcCCCc---cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc-----
Q 000205 497 LGAIASVLVIHPSL---GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----- 568 (1860)
Q Consensus 497 L~LlLsaLLlh~s~---~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----- 568 (1860)
+--...-|+-+... ++.+++.+..+++.+-... . ..=..||..+ .. ..++......|++|-+|-.|.
T Consensus 29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-~-~~R~~fF~~I-~~--~~~~~d~~~~l~aL~~LT~~Grdi~~ 103 (464)
T PF11864_consen 29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-G-LMRAEFFRDI-SD--PSNDDDFDLRLEALIALTDNGRDIDF 103 (464)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-H-HHHHHHHHHH-hc--CCCchhHHHHHHHHHHHHcCCcCchh
Confidence 55555666655543 4679999999998877643 2 2444555553 33 235655566666666665555
Q ss_pred ---ccHHHHHHHHHHhhhcCCC--------CchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHH
Q 000205 569 ---VMIPLVVQTILPMLHKNAK--------PVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAAS 637 (1860)
Q Consensus 569 ---~~iP~VLrtL~pmLsk~s~--------~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAas 637 (1860)
.-.|.+.+.|.+....... ...+..+...+..-=+.-.+.|.++...++-... -.+.+.....-..
T Consensus 104 ~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~---~l~e~~i~~lv~~ 180 (464)
T PF11864_consen 104 FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFN---YLDEDEISSLVDQ 180 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHH
Confidence 3455566666544310000 0000000000000001112345555555554211 1233444455566
Q ss_pred HHHHhhcCCCcchhhHHHHH--HhhccCchhHHHHhHHHHHHhhhccc-cchH-HHHHHHHHhhcCCCCCHHHHHHHHHH
Q 000205 638 IHDVCRKDPDRGVDLILSVA--ACIESRDPIIQALGLQSLAYLCEADV-IDFY-TAWDVIAKHMLDYSLDPMLAQSLCIL 713 (1860)
Q Consensus 638 IRDICk~rPdhG~DLL~~IS--~Clks~~~~v~ALALdALssLCeaDV-VDf~-SAWkVLa~KL~~~~~rPlVlkSLCeL 713 (1860)
+-.+|+..-. ..|+-..++ .++=.-+..|..---+.|..||..-. +++. .+|+++..=++. ...-.+...||++
T Consensus 181 i~~iC~~Ts~-~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S-~~g~~~i~~L~~i 258 (464)
T PF11864_consen 181 ICTICKSTSS-EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKS-HLGHSAIRTLCDI 258 (464)
T ss_pred HHHHHhccCc-HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcC-ccHHHHHHHHHHH
Confidence 6777877664 445544444 22211233444444566788887633 2333 899999888876 6567888999999
Q ss_pred h
Q 000205 714 L 714 (1860)
Q Consensus 714 f 714 (1860)
+
T Consensus 259 L 259 (464)
T PF11864_consen 259 L 259 (464)
T ss_pred H
Confidence 9
No 38
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.39 E-value=1.9e+02 Score=39.24 Aligned_cols=146 Identities=21% Similarity=0.228 Sum_probs=91.2
Q ss_pred hhhhhcCCCCchhhHHHHHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHHhhcC----ccchhh-
Q 000205 6 PLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVADS----KFDLSL- 80 (1860)
Q Consensus 6 ~l~~~t~vp~p~lq~~av~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~g----~ld~~~- 80 (1860)
||..-.+--+|--+|-|++.+= |+..-++.+.. ++.==+.|++++..++|-||+-|+++|-..++.. .+.+++
T Consensus 125 Pl~~~l~d~~~yvRktaa~~va-kl~~~~~~~~~-~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~ 202 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVA-KLFDIDPDLVE-DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQ 202 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHH-HhhcCChhhcc-ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHH
Confidence 4555555667777777776664 66665544422 2233588999999999999999999999998873 344443
Q ss_pred hHH---------------HHHhhhcCC----------------------CchhHHHHHHHHHHHHHhhccccC-CCcccc
Q 000205 81 GLL---------------ELQSALEGS----------------------DPKFVTLFVKALGYLVRLGFERFN-GSWKLG 122 (1860)
Q Consensus 81 ~L~---------------~L~s~L~~s----------------------s~r~~~~lvkaI~~Ll~l~~~r~~-g~~~~~ 122 (1860)
.+. +.+..|... .++-+-..+|.|..++-.--+... -.++
T Consensus 203 ~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K-- 280 (734)
T KOG1061|consen 203 LINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKK-- 280 (734)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHH--
Confidence 111 112222222 222223345555544433221100 0001
Q ss_pred CCCCCcceeecccCcchHHHHHHHHHHHHhhcccc
Q 000205 123 ATENHPFIKILSSRNEVHTELVQQVLLFMTQNKHL 157 (1860)
Q Consensus 123 ~~~~HPfIsiL~sr~d~~~~LlqQV~~~~~q~~~~ 157 (1860)
-.-|+++++.+.++.+-..+.-|..+++++++.
T Consensus 281 --~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~ 313 (734)
T KOG1061|consen 281 --VAPPLVTLLSSESEIQYVALRNINLILQKRPEI 313 (734)
T ss_pred --hcccceeeecccchhhHHHHhhHHHHHHhChHH
Confidence 357999999999999999999999999998763
No 39
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=25.42 E-value=33 Score=36.22 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHH
Q 000205 23 VVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRL 70 (1860)
Q Consensus 23 v~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rL 70 (1860)
++.+|.+|++- ++.||++|..+++||||+|-.+|+..+.++
T Consensus 34 ~~~~~~eLk~r-------~gd~r~aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 34 MIRIYDELKSR-------GGDQRDALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp HHHHHHHHHHS-------TT-GGGGGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhc-------CcchHHHHHHHHcCCChhHHHHHHHHHHHh
Confidence 34566666654 567899999999999999998888877753
No 40
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.02 E-value=86 Score=31.95 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=26.8
Q ss_pred hhHH-HHHHHHHhhhcCCCCch-hhhhhhhhHHHhhcc
Q 000205 1273 DYVN-AFLELFRKCYSNPYPPI-IHLGGMLGVVNALGA 1308 (1860)
Q Consensus 1273 e~v~-~ll~~~~~~yt~~~p~~-~~lg~m~g~vna~ga 1308 (1860)
..++ .+..++.+.+.+|-.++ .|.|++.|+... |.
T Consensus 42 ~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l-G~ 78 (92)
T PF07571_consen 42 PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL-GP 78 (92)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HH
Confidence 3444 67788888888776666 999999999876 65
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=23.80 E-value=2.9e+02 Score=24.65 Aligned_cols=53 Identities=21% Similarity=0.019 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcccC-CChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhc
Q 000205 704 PMLAQSLCILLRWGA-MDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQ 763 (1860)
Q Consensus 704 PlVlkSLCeLfp~ga-vdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~ 763 (1860)
|.|..+-|.-++... ...+..+.+..+++..|=....+++ + +||.+|..||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~----~---~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD----D---SVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS----H---HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC----H---HHHHHHHHHHhc
Confidence 556677777776544 3355666678888888887764332 1 679999999985
No 42
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=4e+02 Score=39.10 Aligned_cols=182 Identities=16% Similarity=0.211 Sum_probs=108.3
Q ss_pred HHHHHHHhhcCCCcch-hhHHHHH------HhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcC--CCCCHH
Q 000205 635 AASIHDVCRKDPDRGV-DLILSVA------ACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLD--YSLDPM 705 (1860)
Q Consensus 635 AasIRDICk~rPdhG~-DLL~~IS------~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~--~~~rPl 705 (1860)
-.+.||+|.--.|-|+ |||=..= +--.++-+ +|-++-+|+. .---..-...+.|-||+=. ||-++.
T Consensus 939 isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~G--aAfGf~~i~~---~a~~kl~p~l~kLIPrLyRY~yDP~~~ 1013 (1702)
T KOG0915|consen 939 ISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKG--AAFGFGAIAK---QAGEKLEPYLKKLIPRLYRYQYDPDKK 1013 (1702)
T ss_pred chHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccc--hhhchHHHHH---HHHHhhhhHHHHhhHHHhhhccCCcHH
Confidence 3567777776665332 4544431 22233233 2334444432 1233455667777777654 488999
Q ss_pred HHHHHHHHhcccCCC-hHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc----ccccccccCCcccch
Q 000205 706 LAQSLCILLRWGAMD-AEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE----VSHIDKNILDFKQRS 780 (1860)
Q Consensus 706 VlkSLCeLfp~gavd-aeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~----Ie~Lpe~iPd~~gs~ 780 (1860)
|..++.....-+..| .+.-+++.++|++.|=---+ +.+| |||.++.-||..-- .+.+-+.+| .-
T Consensus 1014 Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt------~kew-RVReasclAL~dLl~g~~~~~~~e~lp----el 1082 (1702)
T KOG0915|consen 1014 VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT------SKEW-RVREASCLALADLLQGRPFDQVKEKLP----EL 1082 (1702)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc------chhH-HHHHHHHHHHHHHHcCCChHHHHHHHH----HH
Confidence 999999999777777 45688888999998877544 3469 99999999998543 222222222 34
Q ss_pred HHHHHhccC---hHHHHHHHHHHHHHHHHHHhhcccccccccCCCcchhhhhhcchhhhhh
Q 000205 781 FEILISETN---PVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFS 838 (1860)
Q Consensus 781 y~qLLsetn---~sVL~A~eeLLtslIk~E~~~~rR~vy~ktvagsk~~Kll~~IP~~LlK 838 (1860)
|..++.--+ .+|+.|.+.+.+.+-+- ...+-.. +-+.+-..++|.|-||++-
T Consensus 1083 w~~~fRvmDDIKEsVR~aa~~~~~~lsKl-~vr~~d~-----~~~~~~~~~l~~iLPfLl~ 1137 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIKESVREAADKAARALSKL-CVRICDV-----TNGAKGKEALDIILPFLLD 1137 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccc-----CCcccHHHHHHHHHHHHhc
Confidence 776664333 35777766554333221 1111111 2244556788999999984
No 43
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.81 E-value=7.2e+02 Score=34.58 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=87.0
Q ss_pred hHhcCCCc--cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhh--------hhccCcccHH
Q 000205 503 VLVIHPSL--GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLP--------SIASQSVMIP 572 (1860)
Q Consensus 503 aLLlh~s~--~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLP--------sLA~hk~~iP 572 (1860)
=|+-|+++ ++.|+-+...+..++|.+ +.++++- +-+++ . ++|+-+...-+.-+- .+.-.+.++|
T Consensus 149 ~Ll~~~~~~irKKA~Lca~r~irK~P~l-~e~f~~~-~~~lL-~---ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~ 222 (866)
T KOG1062|consen 149 RLLQHRDPYIRKKAALCAVRFIRKVPDL-VEHFVIA-FRKLL-C---EKHHGVLIAGLHLITELCKISPDALSYFRDLVP 222 (866)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCchH-HHHhhHH-HHHHH-h---hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35555543 688888999999999998 4755554 33331 2 234444333333222 2333457999
Q ss_pred HHHHHHHHhhhcC----------CCCchhHHHHHHHHHHHhhcccchhhHHhhhcCc---CCCCccchhhHHHHHHHHHH
Q 000205 573 LVVQTILPMLHKN----------AKPVLYATATRLLCQTWEINDRAFGSLQGVLQPK---LLIDFKSERNICISIAASIH 639 (1860)
Q Consensus 573 ~VLrtL~pmLsk~----------s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s---~~~~~~~ewEv~IArAasIR 639 (1860)
..+++|..+...+ +.|=|+-..+|+|-=+=+.++++.--+.++|.+- ..+++..--.+.+-+..+|-
T Consensus 223 ~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~ 302 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIM 302 (866)
T ss_pred HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 9999998554432 5788999999999999999999999999988762 12333444456666666666
Q ss_pred HH
Q 000205 640 DV 641 (1860)
Q Consensus 640 DI 641 (1860)
+|
T Consensus 303 ~I 304 (866)
T KOG1062|consen 303 DI 304 (866)
T ss_pred hc
Confidence 66
No 44
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.51 E-value=1.1e+03 Score=33.51 Aligned_cols=195 Identities=17% Similarity=0.200 Sum_probs=110.1
Q ss_pred cCCcchHHHHHhhhhhhccCcccHHHHHHHHH----HhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCC
Q 000205 548 VVCQNKLPKLLGMLPSIASQSVMIPLVVQTIL----PMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLID 623 (1860)
Q Consensus 548 e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~----pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~ 623 (1860)
...|.+....+-+++.+..-....|..++.+. ..+..+.++..+.-|+|-.|--= +--=+-|++.++|.--..=.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-~~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-KVKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-CceeccccchHHHHHHHHHc
Confidence 45777777778888877766555555555443 12333456666666666555222 22223333333332100001
Q ss_pred ccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHH-----H-hhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhh
Q 000205 624 FKSERNICISIAASIHDVCRKDPDRGVDLILSVA-----A-CIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHM 697 (1860)
Q Consensus 624 ~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS-----~-Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL 697 (1860)
.+.+.|+...-|.++--+|+-||+-...+=..|. - -..+++|.++.++.|-+-.||++.
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~--------------- 604 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA--------------- 604 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---------------
Confidence 2357899999999999999999974444433332 2 335567899999999999999832
Q ss_pred cCCCCCHHHHHHHHHHhc-ccCCChHHhHHH---HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc
Q 000205 698 LDYSLDPMLAQSLCILLR-WGAMDAEAYSEA---SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV 766 (1860)
Q Consensus 698 ~~~~~rPlVlkSLCeLfp-~gavdaeeYee~---~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I 766 (1860)
.|++ |..-+.+=.|.. .+.-+...|... ..++|..+=+.|-++-+ -.....||.|+++-.+
T Consensus 605 ~~~g--~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~------~~l~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 605 ANYG--PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP------NLLICYAFPAVAKITL 669 (1005)
T ss_pred Hhhc--chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc------HHHHHHHhHHhHhhee
Confidence 2322 222222222221 222233444444 55555555555543322 2457889999888764
No 45
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=1.8e+02 Score=39.71 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=83.8
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHH
Q 000205 575 VQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLIL 654 (1860)
Q Consensus 575 LrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~ 654 (1860)
+.++|..|. +.++.+|+.|+|.|..+=. +-+-|-.--++...- .+-.--++-..|+||-.+=.-+|+.-.+++-
T Consensus 110 IntfQk~L~-DpN~LiRasALRvlSsIRv--p~IaPI~llAIk~~~---~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e 183 (968)
T KOG1060|consen 110 INTFQKALK-DPNQLIRASALRVLSSIRV--PMIAPIMLLAIKKAV---TDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE 183 (968)
T ss_pred HHHHHhhhc-CCcHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHh---cCCcHHHHHHHHHhhHHHhcCChhhHHHHHH
Confidence 345665664 7899999999999997521 223343333333221 1223456677899999999999984449999
Q ss_pred HHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 000205 655 SVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLR 715 (1860)
Q Consensus 655 ~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp 715 (1860)
.|..-+.+..+-++..|.=|-..-|-.. .+.|.|+.+ .+|++|+
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPer-------ldLIHknyr----------klC~ll~ 227 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPER-------LDLIHKNYR----------KLCRLLP 227 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhH-------HHHhhHHHH----------HHHhhcc
Confidence 9999999999988888887777777543 356777776 4999996
No 46
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.89 E-value=4.2e+02 Score=35.35 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=75.2
Q ss_pred CCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCC-CCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCc
Q 000205 586 AKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLL-IDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRD 664 (1860)
Q Consensus 586 s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~-~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~ 664 (1860)
++++.+-+|-+++.+-|+ -||.|++--...-. =..+++-.+++..-..+-++|+.+|+|=.-+.-.+.+++.+++
T Consensus 34 g~~k~K~Laaq~I~kffk----~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFK----HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHC----C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhccc
Confidence 345555556555555554 57777643222100 0112233455555666667899999876666667778999999
Q ss_pred hhHHHHhHHHHHHhhhccccchHHHH-HHHHHhhcCCCCCHHHHHHHHHHh-----cccC--CC-hHHhHHHHHHHHHHH
Q 000205 665 PIIQALGLQSLAYLCEADVIDFYTAW-DVIAKHMLDYSLDPMLAQSLCILL-----RWGA--MD-AEAYSEASRTVLKIL 735 (1860)
Q Consensus 665 ~~v~ALALdALssLCeaDVVDf~SAW-kVLa~KL~~~~~rPlVlkSLCeLf-----p~ga--vd-aeeYee~~~~VI~~L 735 (1860)
+.-...+=.+|..|-+.|.-+..++- +.|... . ..+..+......|+ +..+ .+ .+|-|++..+.|..+
T Consensus 110 ~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~-~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv 186 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--K-SGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV 186 (556)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--c-cCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence 99999999999999997765544433 444321 1 12345555555555 2222 22 366777766666554
Q ss_pred HH
Q 000205 736 WD 737 (1860)
Q Consensus 736 W~ 737 (1860)
=+
T Consensus 187 L~ 188 (556)
T PF05918_consen 187 LQ 188 (556)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 47
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.72 E-value=95 Score=26.47 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHccCcchhhhhhHHHHHHHH
Q 000205 1347 QHVTSLMQEMFLVAQTSDDHQLQQYAAWAMSFL 1379 (1860)
Q Consensus 1347 ~~~~~~~qeifl~a~~s~~~~~q~~a~w~~~~l 1379 (1860)
..+..+++-+ + ++|..+|.+|+|+++.|
T Consensus 12 g~i~~Lv~ll----~-~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLL----K-SPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHT----T-SSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH----c-CCCHHHHHHHHHHHHHH
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=20.50 E-value=1e+02 Score=27.60 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhhcCCC----cchhhHHHHHHhhccCchhHHHHhHHHHHHh
Q 000205 628 RNICISIAASIHDVCRKDPD----RGVDLILSVAACIESRDPIIQALGLQSLAYL 678 (1860)
Q Consensus 628 wEv~IArAasIRDICk~rPd----hG~DLL~~IS~Clks~~~~v~ALALdALssL 678 (1860)
|+++-+.+.++-.++...|+ +-.++++.+..+++++++.+...|..||..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56667777788777777775 4456777777899888888888888887643
No 49
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.3e+02 Score=40.77 Aligned_cols=101 Identities=24% Similarity=0.307 Sum_probs=65.0
Q ss_pred HHHHHHHHH-HHhhccCccchhhHHHHHHhhhhhccCccchhhhhhHHHHHHhhhhccccccchhHHHHhhhhhcccccc
Q 000205 937 ANDILKTLM-RVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLT 1015 (1860)
Q Consensus 937 a~Dil~~~i-k~a~~ssP~v~gNsiLAL~gLa~~v~~~~h~v~ssas~fLl~wL~q~eh~h~qwsAaisLGll~~slh~t 1015 (1860)
+..+++.-+ +.+..+++-..|.+.+|||-. -..|. +.+.+||++||...+.+-=|-++-+||||+.---+-
T Consensus 376 ~~~ll~pYLP~~~~~~s~y~EGGalyAlGLI-----hA~hG--~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~- 447 (929)
T KOG2062|consen 376 AMKLLAPYLPKEAGEGSGYKEGGALYALGLI-----HANHG--RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN- 447 (929)
T ss_pred HHHHhhhhCCccCCCCCCccccchhhhhhcc-----ccCcC--ccHHHHHHHHHHhccchhhhhhhhhhccchhccccc-
Confidence 445555544 556678888999999998743 23444 558899999999988887777888888886533221
Q ss_pred chhHHHHHHHHHH-HHHhcccccceechhhhhhHHhhh
Q 000205 1016 DHKQKFQNITGLL-EVLSSSRSILVRGACGIGLGFSCQ 1052 (1860)
Q Consensus 1016 D~k~k~~~Is~Ll-~vls~s~S~~Vkgacgl~LG~~c~ 1052 (1860)
+.|-.-+ ++|-.++--.. -|+|+|.|++..
T Consensus 448 ------~eiYe~lKevLy~D~AvsG-EAAgi~MGl~ml 478 (929)
T KOG2062|consen 448 ------EEIYEKLKEVLYNDSAVSG-EAAGIAMGLLML 478 (929)
T ss_pred ------HHHHHHHHHHHhccchhhh-hHHHHhhhhHhh
Confidence 2222222 33333332233 378888888744
Done!