Query 000205
Match_columns 1860
No_of_seqs 86 out of 88
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 01:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 97.5 0.45 1.5E-05 60.7 40.8 428 550-1053 26-472 (852)
2 1b3u_A Protein (protein phosph 97.4 0.013 4.6E-07 69.5 23.2 228 512-765 66-309 (588)
3 4fdd_A Transportin-1; heat rep 96.9 0.49 1.7E-05 60.3 31.8 226 511-765 232-470 (852)
4 1u6g_C TIP120 protein, CAND1; 96.9 2.1 7.1E-05 56.9 38.3 134 4-152 8-143 (1230)
5 2jdq_A Importin alpha-1 subuni 96.5 0.094 3.2E-06 60.4 19.5 231 511-765 37-304 (450)
6 3ltm_A Alpha-REP4; protein eng 96.4 0.067 2.3E-06 56.2 16.3 173 549-766 31-203 (211)
7 1b3u_A Protein (protein phosph 96.4 0.17 5.8E-06 60.2 21.2 175 573-765 11-192 (588)
8 4hxt_A De novo protein OR329; 96.3 0.076 2.6E-06 56.1 15.7 195 550-765 15-240 (252)
9 2jdq_A Importin alpha-1 subuni 96.0 0.12 4.1E-06 59.5 17.0 268 512-805 83-390 (450)
10 2vgl_B AP-2 complex subunit be 96.0 0.061 2.1E-06 66.4 15.0 194 550-765 62-267 (591)
11 3ltj_A Alpharep-4; protein eng 95.9 0.18 6.2E-06 52.5 16.3 173 548-765 25-197 (201)
12 3ltm_A Alpha-REP4; protein eng 95.9 0.13 4.3E-06 54.1 15.2 185 564-800 14-198 (211)
13 1oyz_A Hypothetical protein YI 95.8 0.26 8.7E-06 54.1 17.3 205 512-765 41-249 (280)
14 2bpt_A Importin beta-1 subunit 95.7 4.7 0.00016 50.5 30.4 205 551-765 345-584 (861)
15 1wa5_B Importin alpha subunit; 95.7 0.36 1.2E-05 58.0 19.8 229 511-765 190-456 (530)
16 1oyz_A Hypothetical protein YI 95.6 0.082 2.8E-06 57.9 12.6 186 549-765 35-220 (280)
17 1wa5_B Importin alpha subunit; 95.5 1.1 3.6E-05 54.0 23.0 269 512-805 105-412 (530)
18 3tjz_B Coatomer subunit gamma; 95.4 0.27 9.1E-06 58.4 16.9 209 531-765 63-278 (355)
19 4b8j_A Importin subunit alpha- 95.2 1.1 3.8E-05 53.5 21.7 273 511-806 91-401 (528)
20 4hxt_A De novo protein OR329; 95.0 0.34 1.2E-05 51.1 14.8 216 571-808 4-244 (252)
21 1ibr_B P95, importin beta-1 su 95.0 0.95 3.2E-05 52.1 19.6 164 512-682 107-290 (462)
22 4b8j_A Importin subunit alpha- 95.0 0.22 7.7E-06 59.5 14.9 272 511-807 135-445 (528)
23 3ltj_A Alpharep-4; protein eng 94.8 0.47 1.6E-05 49.4 14.9 173 581-801 22-194 (201)
24 2vgl_B AP-2 complex subunit be 94.7 0.36 1.2E-05 59.6 16.0 229 512-765 67-310 (591)
25 4db8_A Armadillo-repeat protei 94.6 0.5 1.7E-05 50.4 14.9 194 550-764 25-249 (252)
26 1qgr_A Protein (importin beta 94.4 15 0.00051 46.2 44.6 159 512-681 107-289 (876)
27 4db6_A Armadillo repeat protei 93.9 0.63 2.2E-05 48.4 13.4 164 585-764 23-207 (210)
28 4db8_A Armadillo-repeat protei 93.1 1.4 4.9E-05 46.9 14.9 177 568-765 11-208 (252)
29 1w63_A Adapter-related protein 92.5 0.7 2.4E-05 57.6 13.1 144 566-719 100-263 (618)
30 4db6_A Armadillo repeat protei 91.9 0.95 3.3E-05 47.1 11.4 165 500-681 16-210 (210)
31 1w63_A Adapter-related protein 91.4 2.7 9.3E-05 52.4 16.6 197 549-765 119-341 (618)
32 1ibr_B P95, importin beta-1 su 91.3 0.47 1.6E-05 54.6 9.0 131 549-680 229-395 (462)
33 3ul1_B Importin subunit alpha- 91.2 3.9 0.00013 49.5 17.2 253 533-805 101-387 (510)
34 2qk2_A LP04448P; mini spindles 90.7 2.9 9.8E-05 45.3 14.0 158 626-800 27-200 (242)
35 3tpo_A Importin subunit alpha- 89.9 5.4 0.00018 48.4 17.0 252 533-804 120-405 (529)
36 2bpt_A Importin beta-1 subunit 89.7 50 0.0017 41.4 41.9 220 531-765 178-439 (861)
37 2qk2_A LP04448P; mini spindles 89.0 4.1 0.00014 44.1 13.5 163 585-765 26-204 (242)
38 1qgr_A Protein (importin beta 88.0 5.5 0.00019 50.0 15.6 164 587-764 341-535 (876)
39 1jdh_A Beta-catenin; beta-cate 87.8 19 0.00064 42.5 19.1 179 550-741 30-238 (529)
40 1u6g_C TIP120 protein, CAND1; 87.5 91 0.0031 41.6 41.6 104 7-110 138-244 (1230)
41 2vgl_A Adaptor protein complex 87.4 4 0.00014 51.3 13.8 146 568-719 106-270 (621)
42 3ul1_B Importin subunit alpha- 87.3 8.3 0.00028 46.7 16.1 267 511-805 118-430 (510)
43 2z6g_A B-catenin; FULL-length, 87.1 11 0.00036 48.6 17.7 229 512-764 378-661 (780)
44 2z6h_A Catenin beta-1, beta-ca 86.4 37 0.0013 42.1 21.5 179 549-740 26-234 (644)
45 3tpo_A Importin subunit alpha- 86.3 8.6 0.00029 46.6 15.5 270 511-805 137-449 (529)
46 1jdh_A Beta-catenin; beta-cate 84.2 11 0.00037 44.5 14.6 229 511-765 34-294 (529)
47 2z6h_A Catenin beta-1, beta-ca 83.2 24 0.00084 43.7 17.8 120 511-646 31-172 (644)
48 2z6g_A B-catenin; FULL-length, 79.3 33 0.0011 44.1 17.5 120 550-680 163-305 (780)
49 2qk1_A Protein STU2; STU2P, XM 75.4 8.9 0.0003 42.7 9.5 164 626-804 28-219 (249)
50 1xqr_A HSPBP1 protein; armadil 72.2 10 0.00035 43.6 9.2 131 586-740 94-238 (296)
51 1xqr_A HSPBP1 protein; armadil 67.8 41 0.0014 38.7 12.9 160 589-764 55-236 (296)
52 2qk1_A Protein STU2; STU2P, XM 65.9 86 0.0029 34.8 14.7 165 511-680 33-220 (249)
53 3now_A UNC-45 protein, SD10334 63.6 68 0.0023 42.1 15.1 156 511-682 553-739 (810)
54 4ady_A RPN2, 26S proteasome re 62.0 9.7 0.00033 50.6 7.1 89 950-1052 483-571 (963)
55 1te4_A Conserved protein MTH18 60.9 4.4 0.00015 40.0 2.9 105 550-676 25-129 (131)
56 2vgl_A Adaptor protein complex 59.6 28 0.00097 43.7 10.4 124 550-681 124-271 (621)
57 3now_A UNC-45 protein, SD10334 57.5 1.6E+02 0.0056 38.7 17.0 270 512-805 397-737 (810)
58 4ady_A RPN2, 26S proteasome re 54.5 19 0.00063 48.1 7.7 73 979-1059 576-656 (963)
59 4ffb_C Protein STU2; tubulin f 45.5 2.1E+02 0.0073 31.6 13.5 162 627-803 22-210 (278)
60 1te4_A Conserved protein MTH18 43.6 40 0.0014 33.1 6.5 24 46-69 45-68 (131)
61 1wa5_C Importin alpha RE-expor 38.8 57 0.002 42.5 8.7 131 626-765 373-524 (960)
62 1lsh_A Lipovitellin (LV-1N, LV 36.1 4.3E+02 0.015 35.6 16.4 189 551-763 339-540 (1056)
63 3m1i_C Exportin-1; heat repeat 35.8 1.3E+02 0.0046 39.6 11.5 263 494-764 234-567 (1049)
64 1xm9_A Plakophilin 1; armadill 34.8 3.7E+02 0.013 32.1 14.2 146 570-741 3-173 (457)
65 1xm9_A Plakophilin 1; armadill 31.1 2.1E+02 0.0073 34.1 11.3 140 608-765 284-448 (457)
66 3l9t_A Putative uncharacterize 29.7 3.2E+02 0.011 31.2 11.6 83 585-677 82-165 (240)
67 2of3_A ZYG-9; multifunctional 29.0 2.5E+02 0.0086 32.3 10.8 172 512-694 64-247 (266)
68 2db0_A 253AA long hypothetical 28.8 1.6E+02 0.0056 33.1 8.8 125 512-647 88-214 (253)
69 3tjz_B Coatomer subunit gamma; 27.2 1.3E+02 0.0043 35.9 8.2 81 632-714 119-200 (355)
70 3l6x_A Catenin delta-1; cateni 27.1 4.7E+02 0.016 33.1 13.8 150 607-765 308-478 (584)
71 3oc3_A Helicase MOT1, MOT1; re 22.6 5.1E+02 0.017 33.6 12.3 184 591-800 245-431 (800)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.51 E-value=0.45 Score=60.65 Aligned_cols=428 Identities=12% Similarity=0.052 Sum_probs=212.5
Q ss_pred CcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccch-----hhHHhhhcCcCCCCc
Q 000205 550 CQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAF-----GSLQGVLQPKLLIDF 624 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRaf-----P~LQ~lL~~s~~~~~ 624 (1860)
|+..+..--+.|-.+..++...+....++. .+ ++.++..|-.|.-++-...+++.+.. ..+...+... ..
T Consensus 26 d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~-~~-~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~-l~-- 100 (852)
T 4fdd_A 26 DTTIQRTVQQKLEQLNQYPDFNNYLIFVLT-KL-KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN-IG-- 100 (852)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TC-TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT-TT--
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHHh-cc-CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH-Hc--
Confidence 334444444444444444433333344433 11 12344555555544444433322222 2233333221 11
Q ss_pred cchhhHHHHHHHHHHHHhhcCC-CcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHH-----HHHHHHHhhc
Q 000205 625 KSERNICISIAASIHDVCRKDP-DRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYT-----AWDVIAKHML 698 (1860)
Q Consensus 625 ~~ewEv~IArAasIRDICk~rP-dhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~S-----AWkVLa~KL~ 698 (1860)
+....++-..|.++..|.+.++ ++=-|+++.+-+++.+.++...-.|+.++..+|+.-.-.+.+ .++.+-+.+-
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~ 180 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 180 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH
Confidence 2234677888999999999875 467789999999999988989999999999999864322211 1455555544
Q ss_pred CC--CCCHHHHHHHHHHhcc-cCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCccccccccc-C
Q 000205 699 DY--SLDPMLAQSLCILLRW-GAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNI-L 774 (1860)
Q Consensus 699 ~~--~~rPlVlkSLCeLfp~-gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~i-P 774 (1860)
.. +.+|.|..+-+.-+.. .......+.....+++..|+....+++ + +||.+|+++|+..-- .-|+.+ |
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~----~---~vr~~a~~~L~~l~~-~~~~~~~~ 252 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE----P---EVRKNVCRALVMLLE-VRMDRLLP 252 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC----H---HHHHHHHHHHHHHHH-HCHHHHGG
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC----H---HHHHHHHHHHHHHHH-hCHHHHHH
Confidence 32 5577777666666532 122234444556688889988765433 2 568889888875431 111111 1
Q ss_pred Cccc--chHHHHHhccChHHHHHHHHHHHHHHHHHHhhcccccccccCCCcchhhhhhcchhhhhhc-cccccccCCCce
Q 000205 775 DFKQ--RSFEILISETNPVVLRAMEGFQVKIITHEHSNRRRFVKEKKVPGSKIEKLLDIFPRVIFSS-DKKIYARELPGA 851 (1860)
Q Consensus 775 d~~g--s~y~qLLsetn~sVL~A~eeLLtslIk~E~~~~rR~vy~ktvagsk~~Kll~~IP~~LlK~-ye~nKqp~~PGa 851 (1860)
.+.+ ....++++..+.++....-+|+..+.+.++. +.. + ..-..+ .+|..+-++ |.+.. .
T Consensus 253 ~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~-----~-~~~~~~---l~p~ll~~l~~~e~d-~----- 315 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDV-----L-VRHLPK---LIPVLVNGMKYSDID-I----- 315 (852)
T ss_dssp GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHH-----H-TTTHHH---HHHHHHHHTSCCHHH-H-----
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHH-----H-HHHHHH---HHHHHHHHcCCcHhH-H-----
Confidence 0000 0123345556677888878887776654311 000 0 000111 133322211 10000 0
Q ss_pred eeeccccCcccccccccccchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhhhHHHHHHHHHHHHHHHhhhcccccCCch
Q 000205 852 ALLCLSFTRKDLRNQGEARGLQNVLSGYENALIDIAASFQLSRNIFVALLSLQSWKFFMQRWVRAIIMSIDAKAESIVPD 931 (1860)
Q Consensus 852 lLLcy~~~p~~~~~~g~sk~l~~~~~aY~q~L~~li~ev~iSrdw~~aLll~qSW~~FM~Rw~~Avv~~r~gKe~~e~~~ 931 (1860)
.++--++ ..|.+.++ .-.-.+..++--+.|..+++.. + +
T Consensus 316 ~~~~~d~-~ed~~~dd-~~~~~~vr~~a~~~L~~la~~~--------------------------------~-------~ 354 (852)
T 4fdd_A 316 ILLKGDV-EGGSGGDD-TISDWNLRKCSAAALDVLANVY--------------------------------R-------D 354 (852)
T ss_dssp HHHHC--------------CCCCHHHHHHHHHHHHHHHH--------------------------------G-------G
T ss_pred HHhcCCc-cccccccc-ccccchHHHHHHHHHHHHHHhc--------------------------------c-------H
Confidence 0000000 00000000 0000000111111111111111 0 0
Q ss_pred hhhhhHHHHHHHHHHHhhccCccchhhHHHHHHhhhhhccCccchhhhhhHHHHHHhhhhccccccchhHHHHhhhhhcc
Q 000205 932 RTFKAANDILKTLMRVAEESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSS 1011 (1860)
Q Consensus 932 K~~~Aa~Dil~~~ik~a~~ssP~v~gNsiLAL~gLa~~v~~~~h~v~ssas~fLl~wL~q~eh~h~qwsAaisLGll~~s 1011 (1860)
. ....++..+......+.|.++.-++.|+|.++-..+.............|++-+.. ++.+=++.|+-.+|-++..
T Consensus 355 ~---~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 355 E---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp G---GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHH
T ss_pred H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 0 11122222233333457899999999999997655431111225556666666643 4444456677788877765
Q ss_pred ccccch-hHHHHHHHHHHHHHhcccccceechhhhhhHHhhhh
Q 000205 1012 LHLTDH-KQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQD 1053 (1860)
Q Consensus 1012 lh~tD~-k~k~~~Is~Ll~vls~s~S~~Vkgacgl~LG~~c~~ 1053 (1860)
+.+.+. +...+.+..+++.+.+ ++..|+.++..+||.+|..
T Consensus 431 ~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 431 VVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 533222 2233555666666544 4568888888898888753
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.38 E-value=0.013 Score=69.53 Aligned_cols=228 Identities=9% Similarity=0.022 Sum_probs=141.1
Q ss_pred chHHHHHHHHHccC--CCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc---cHHHHHHHHHHhhhcCC
Q 000205 512 SSAVDAFATVGKMD--PKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV---MIPLVVQTILPMLHKNA 586 (1860)
Q Consensus 512 ~~al~~L~~L~k~d--P~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~---~iP~VLrtL~pmLsk~s 586 (1860)
..+.+.+..+.... +.+ ...+++++.... . ..++.++..-.++|-.++.+-. ..+.++.++..+ .++.
T Consensus 66 ~~~~~~L~~~~~~~~~~~~-~~~ll~~L~~l~---~--~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l-~~~~ 138 (588)
T 1b3u_A 66 LALAEQLGTFTTLVGGPEY-VHCLLPPLESLA---T--VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGGD 138 (588)
T ss_dssp HHHHHHHTTCSGGGTSGGG-GGGGHHHHHHHT---T--SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTCS
T ss_pred HHHHHHHHHHHhccCcHHH-HHHHHHHHHHHH---h--CchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hcCC
Confidence 33555554443321 223 355666665432 2 3477888888888888776431 122334444422 2345
Q ss_pred CCchhHHHHHHHHHHHhhc-----ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC--cchhhHHHHHHh
Q 000205 587 KPVLYATATRLLCQTWEIN-----DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD--RGVDLILSVAAC 659 (1860)
Q Consensus 587 ~~~LrA~ALRLLtkLWkkq-----dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd--hG~DLL~~IS~C 659 (1860)
.+..|..|.+++..+..+- +.+.|.+.+++.+ ..++++.+.+.++-.+|+.-+. .-.++++.+..+
T Consensus 139 ~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-------~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 211 (588)
T 1b3u_A 139 WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-------DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL 211 (588)
T ss_dssp SHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTC-------SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH
Confidence 6778899999998887653 3456666665543 3678889999999999988774 335788888888
Q ss_pred hccCchhHHHHhHHHHHHhhhcccc-chHH-HHHHHHHhhcCCCCCHHHHHHHHHHhcccCC--ChHHhHHHHHHHHHHH
Q 000205 660 IESRDPIIQALGLQSLAYLCEADVI-DFYT-AWDVIAKHMLDYSLDPMLAQSLCILLRWGAM--DAEAYSEASRTVLKIL 735 (1860)
Q Consensus 660 lks~~~~v~ALALdALssLCeaDVV-Df~S-AWkVLa~KL~~~~~rPlVlkSLCeLfp~gav--daeeYee~~~~VI~~L 735 (1860)
.+++++.+...|++++..+++.--- ++.. ....+.+-+ + +.++.|.++.|+.|+.... +.+. ...+++..+
T Consensus 212 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~-d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l 286 (588)
T 1b3u_A 212 ASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA-E-DKSWRVRYMVADKFTELQKAVGPEI---TKTDLVPAF 286 (588)
T ss_dssp HTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHH-T-CSSHHHHHHHHHTHHHHHHHHCHHH---HHHTHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc-c-CCCHHHHHHHHHHHHHHHHHhCccc---chhHHHHHH
Confidence 8888899988999999988874210 1111 112222222 3 6688899999888864332 2222 344556665
Q ss_pred HHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 736 WDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 736 W~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
-+...+++ + .||.+|..+|+.+-
T Consensus 287 ~~~l~d~~------~-~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 287 QNLMKDCE------A-EVRAAASHKVKEFC 309 (588)
T ss_dssp HHHHTCSS------H-HHHHHHHHHHHHHH
T ss_pred HHHhCCCc------H-HHHHHHHHHHHHHH
Confidence 55543322 2 57899999888765
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.89 E-value=0.49 Score=60.26 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=131.2
Q ss_pred cchHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCch
Q 000205 511 GSSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVL 590 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~L 590 (1860)
++.+++.+..+++..|..-.+++..++-+.+...+ ..++.++...++.+..++.++.+-. .+.|.+ +.+
T Consensus 232 r~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~l~~l~~~~~~~~----~~~~~~-----~~l 300 (852)
T 4fdd_A 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQPICKD----VLVRHL-----PKL 300 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTSTTHHH----HHTTTH-----HHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHhcchhHHH----HHHHHH-----HHH
Confidence 36699999999987765423443333322221123 3467788888888888887653211 111111 001
Q ss_pred hHHHHHHHH-----HHHhhcccchhhHHhhhcCcCCCC-ccchhhHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhhccC
Q 000205 591 YATATRLLC-----QTWEINDRAFGSLQGVLQPKLLID-FKSERNICISIAASIHDVCRKDPD-RGVDLILSVAACIESR 663 (1860)
Q Consensus 591 rA~ALRLLt-----kLWkkqdRafP~LQ~lL~~s~~~~-~~~ewEv~IArAasIRDICk~rPd-hG~DLL~~IS~Clks~ 663 (1860)
-+..++.+. ..|.++|- .+.+.-+ ....|.++.+.+.++..+++..|+ --..+++.+.+++++.
T Consensus 301 ~p~ll~~l~~~e~d~~~~~~d~---------~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~ 371 (852)
T 4fdd_A 301 IPVLVNGMKYSDIDIILLKGDV---------EGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH 371 (852)
T ss_dssp HHHHHHHTSCCHHHHHHHHC---------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCcHhHHHHhcCCc---------ccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 111111110 11221110 0000000 014678888899999999988775 2234666667788888
Q ss_pred chhHHHHhHHHHHHhhhccc--c--chHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCCh--HHhHHHHHHHHHHHHH
Q 000205 664 DPIIQALGLQSLAYLCEADV--I--DFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDA--EAYSEASRTVLKILWD 737 (1860)
Q Consensus 664 ~~~v~ALALdALssLCeaDV--V--Df~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavda--eeYee~~~~VI~~LW~ 737 (1860)
++.+...|+.++..+++.-- + -+-.....+-+.+. +.+|.|..+.|.-++..+... +..+....+++..|.+
T Consensus 372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~ 449 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449 (852)
T ss_dssp SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 88888889999998887432 1 12345666666665 568999998888886444221 1234456678888887
Q ss_pred hccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 738 TGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 738 ~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.-.+.+ .+|+.+|..||+++-
T Consensus 450 ~L~d~~-------~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 450 RILDSN-------KRVQEAACSAFATLE 470 (852)
T ss_dssp HHTCSS-------HHHHHHHHHHHHHHH
T ss_pred HHhCCC-------HHHHHHHHHHHHHHH
Confidence 654322 267999999998875
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.86 E-value=2.1 Score=56.90 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=87.5
Q ss_pred cchhhhhcCCCCchhhHHHHHHHHHhhhcCCCCCCCCCc-hhHHHHHhhhcCCChhhHHHHHHHHHHHhhc-Cccchhhh
Q 000205 4 YSPLLEKARVPQPSLQKFAVVSIFSKLRTSPAHLGPDSE-PGRDAITQCLNSSSPAVVDQTVREFCRLVAD-SKFDLSLG 81 (1860)
Q Consensus 4 ~~~l~~~t~vp~p~lq~~av~s~f~~l~~~p~~~~~~~~-~~~eal~~~l~S~~~~v~~~av~~L~rLv~~-g~ld~~~~ 81 (1860)
+..|++|..-|+|...+-|...+...+...+..++++.. .--..|-..+.++|+.|=..|+..|..++.. +.=.+.+.
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 567999999999999999999998777664444432211 2234566677899999999999999999863 21234556
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHHHhhccccCCCccccCCCCCcceeecccCcchHHHHHHHHHHHHh
Q 000205 82 LLELQSALEGSDPKFVTLFVKALGYLVRLGFERFNGSWKLGATENHPFIKILSSRNEVHTELVQQVLLFMT 152 (1860)
Q Consensus 82 L~~L~s~L~~ss~r~~~~lvkaI~~Ll~l~~~r~~g~~~~~~~~~HPfIsiL~sr~d~~~~LlqQV~~~~~ 152 (1860)
+..|+..|...+++.-....++++.+...--.... .+.+ ....|++++..+...+.
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~---------~~~~------~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS---------GSAL------AANVCKKITGRLTSAIA 143 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--------------CCT------HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc---------ccch------HHHHHHHHHHHHHHHHc
Confidence 77777777665664445566777776542211100 0111 12468888887777665
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.52 E-value=0.094 Score=60.42 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=153.5
Q ss_pred cchHHHHHHHHHc--cCCCCC--c--hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHH
Q 000205 511 GSSAVDAFATVGK--MDPKLG--V--PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLV 574 (1860)
Q Consensus 511 ~~~al~~L~~L~k--~dP~qa--v--p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~V 574 (1860)
+..++..+..+.. .+|... + +.+++.|.-.+ .. +.++.++...+..|..++.+. ..+|.+
T Consensus 37 r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L--~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 112 (450)
T 2jdq_A 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFL--KR--KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112 (450)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHH--TC--TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHH--CC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHH
Confidence 3557777776643 223210 0 14566666666 33 337888888899998888742 345555
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcC
Q 000205 575 VQTILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKD 645 (1860)
Q Consensus 575 LrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~r 645 (1860)
++.+. ..++..|..|+..+..+-... ..+.|.|-++|..+ ..+++....+.++..+|+..
T Consensus 113 ~~lL~-----~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~------~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 113 IELLS-----SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ------NRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHTT-----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC------CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHc-----CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC------CCHHHHHHHHHHHHHHhCCC
Confidence 55543 357788999999999887654 35677777777642 35778888899999999876
Q ss_pred -CC----cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhcc--ccch---HHHHHHHHHhhcCCCCCHHHHHHHHHHhc
Q 000205 646 -PD----RGVDLILSVAACIESRDPIIQALGLQSLAYLCEAD--VIDF---YTAWDVIAKHMLDYSLDPMLAQSLCILLR 715 (1860)
Q Consensus 646 -Pd----hG~DLL~~IS~Clks~~~~v~ALALdALssLCeaD--VVDf---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp 715 (1860)
|. .-.+.++.+-..++++++.+...+..+|..||+.. .... ......|-+-+. +.++.+....+..++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVG 259 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHHHHHH
Confidence 53 23567888888888889999999999999999853 1111 123344555554 457888888888887
Q ss_pred ccCCChHHhHH-H-HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 716 WGAMDAEAYSE-A-SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 716 ~gavdaeeYee-~-~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
......++..+ . ...++..|-++-.+.+ .+|+.+|..+|++..
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPK-------ESIKKEACWTISNIT 304 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-------HHHHHHHHHHHHHHT
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCCC-------HHHHHHHHHHHHHHH
Confidence 66554333222 1 2257888888765432 157889999988764
No 6
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.44 E-value=0.067 Score=56.18 Aligned_cols=173 Identities=14% Similarity=0.053 Sum_probs=121.0
Q ss_pred CCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchh
Q 000205 549 VCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSER 628 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ew 628 (1860)
.++..+...++.|..++. +..+|.+++.+. +.++..|..|++.+.++- .+.+.|.|.++|.+. ..
T Consensus 31 ~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~-----~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~~~-------~~ 95 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD-ERAVEPLIKALK-----DEDAWVRRAAADALGQIG--DERAVEPLIKALKDE-------DG 95 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-----CSCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCS-------SH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc-----CCCHHHHHHHHHHHHhhC--CHHHHHHHHHHHcCC-------CH
Confidence 478888888888888876 345666665543 467888999999998864 567889999888653 35
Q ss_pred hHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHH
Q 000205 629 NICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQ 708 (1860)
Q Consensus 629 Ev~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlk 708 (1860)
++..+.+.++..+. ..+.++.+-++++++++.+...|+++|..+...+. ...|.+-+. +.+|.|..
T Consensus 96 ~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~--d~~~~vr~ 161 (211)
T 3ltm_A 96 WVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA------VEPLIKALK--DEDGWVRQ 161 (211)
T ss_dssp HHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG------HHHHHHHTT--CSSHHHHH
T ss_pred HHHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHHc--CCCHHHHH
Confidence 56666666666662 24577888888899899999999999999976654 445666564 55788888
Q ss_pred HHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc
Q 000205 709 SLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV 766 (1860)
Q Consensus 709 SLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I 766 (1860)
..++-++.... .+++..|-++..++++ .||.+|.++|+.+.-
T Consensus 162 ~a~~aL~~~~~---------~~~~~~L~~~l~d~~~-------~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 162 SAADALGEIGG---------ERVRAAMEKLAETGTG-------FARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHCS---------HHHHHHHHHHHHHCCH-------HHHHHHHHHHHC---
T ss_pred HHHHHHHHhCc---------hhHHHHHHHHHhCCCH-------HHHHHHHHHHHhcCC
Confidence 88887764432 2344445554433332 579999999998763
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.38 E-value=0.17 Score=60.19 Aligned_cols=175 Identities=12% Similarity=0.077 Sum_probs=113.8
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc--ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhc--CCCc
Q 000205 573 LVVQTILPMLHKNAKPVLYATATRLLCQTWEIN--DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRK--DPDR 648 (1860)
Q Consensus 573 ~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq--dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~--rPdh 648 (1860)
++-.++. .+. +.++..|-.|++.+.+++... ++..+.+-..|... .++++|++.+.+.++.+++.. .+++
T Consensus 11 ~i~~l~~-~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~----~d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 11 PIAVLID-ELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDT----IYDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHHHH-HTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHT----CCCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred cHHHHHH-Hhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 3555555 332 467788999999999988753 33444444444321 123568888888888888875 3346
Q ss_pred chhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHH---HhhcCCCCCHHHHHHHHHHhcccCCChHHhH
Q 000205 649 GVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIA---KHMLDYSLDPMLAQSLCILLRWGAMDAEAYS 725 (1860)
Q Consensus 649 G~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa---~KL~~~~~rPlVlkSLCeLfp~gavdaeeYe 725 (1860)
...+++.+.....++++.+...|.++|..+++.--- -..|+.+- .++.. ++.+.+..+-+.+++.......+
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~~~~~~~-- 159 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVCYPRVSS-- 159 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHHTTTSCH--
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhcCH--
Confidence 788999998888777899999999999999975321 11222222 23334 55788888888887643322211
Q ss_pred HHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 726 EASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 726 e~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
....+++..+.+...+++ + .||.+|.++|+.+-
T Consensus 160 ~~~~~l~~~l~~l~~d~~----~---~VR~~a~~~l~~l~ 192 (588)
T 1b3u_A 160 AVKAELRQYFRNLCSDDT----P---MVRRAAASKLGEFA 192 (588)
T ss_dssp HHHHHHHHHHHHHHTCSC----H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHHH
Confidence 245677777777654332 2 57999999998764
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.28 E-value=0.076 Score=56.06 Aligned_cols=195 Identities=15% Similarity=0.094 Sum_probs=135.0
Q ss_pred CcchHHHHHhhhhhhccCcc----------cHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcc---------cchh
Q 000205 550 CQNKLPKLLGMLPSIASQSV----------MIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIND---------RAFG 610 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk~----------~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqd---------RafP 610 (1860)
++..+..-+.+|-.++.+.. .+|.+++.+. ..++..+..|++.+..+-..++ .+.|
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 47777888888888876653 3444444433 3567889999999998887633 4677
Q ss_pred hHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcch-----hhHHHHHHhhccCchhHHHHhHHHHHHhhhcccc-
Q 000205 611 SLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGV-----DLILSVAACIESRDPIIQALGLQSLAYLCEADVI- 684 (1860)
Q Consensus 611 ~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~-----DLL~~IS~Clks~~~~v~ALALdALssLCeaDVV- 684 (1860)
.|-++|... ..++....+.++..+|..+|+.-. ..++.+-++++++++.+...++.+|..||...--
T Consensus 90 ~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 90 VLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 777777642 467888899999999987776322 3567777888898999999999999999984311
Q ss_pred -ch---HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHH--HHHHHHHHHHHhccccCCCchhhHHHHHHHHH
Q 000205 685 -DF---YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSE--ASRTVLKILWDTGTTTHLGHELQWAKARASAF 758 (1860)
Q Consensus 685 -Df---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee--~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy 758 (1860)
.. ..+-..|-+-+. +.+|.+...-+..+........+.-+ ....++..|-++..+.+ + +|+..|.
T Consensus 163 ~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~---~v~~~a~ 233 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD----S---EVQKEAQ 233 (252)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC----H---HHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc----H---HHHHHHH
Confidence 11 224455555565 45788888888888766654333222 23457888888776543 2 5688888
Q ss_pred HHhhcCc
Q 000205 759 EALTQYE 765 (1860)
Q Consensus 759 ~ALs~F~ 765 (1860)
.+|++..
T Consensus 234 ~~L~~l~ 240 (252)
T 4hxt_A 234 RALENIK 240 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887755
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.04 E-value=0.12 Score=59.51 Aligned_cols=268 Identities=10% Similarity=0.074 Sum_probs=163.5
Q ss_pred chHHHHHHHHHccCCCCC----chhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHHH
Q 000205 512 SSAVDAFATVGKMDPKLG----VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQT 577 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~qa----vp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLrt 577 (1860)
..++.++..++..++... -...++.|+-.+ .. .++.++..-+.+|-.++.+. ..+|.+++.
T Consensus 83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL--~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL--SS---EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT--TC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH--cC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 445555555554332210 022456655555 22 37888888888888888764 345555555
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc
Q 000205 578 ILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR 648 (1860)
Q Consensus 578 L~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh 648 (1860)
+. .+.++..+..|++.+..+-... ..+.|.|-++|... ..++....+.+++.+|...|+.
T Consensus 158 l~----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 158 FS----KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-------DTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp TT----SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSSHHH
T ss_pred hc----CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHCCCcHH
Confidence 43 2356788999999999888654 34667777776542 3567778889999999876541
Q ss_pred -----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc------cchHHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 649 -----GVDLILSVAACIESRDPIIQALGLQSLAYLCEADV------IDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 649 -----G~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV------VDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
....++.+-..++++++.+...|+.+|..||..+- ++- .....|-+-+.+ .+|.+.+..|..++..
T Consensus 227 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~--~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNC-SALQSLLHLLSS--PKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT-THHHHHHHHTTC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHC-ccHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 12467777788888889999999999999997631 221 345556666664 4789999999999766
Q ss_pred CCCh-HHhHHHH-HHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCccc----ccccccCCcccchHHHHHhccChH
Q 000205 718 AMDA-EAYSEAS-RTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVS----HIDKNILDFKQRSFEILISETNPV 791 (1860)
Q Consensus 718 avda-eeYee~~-~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie----~Lpe~iPd~~gs~y~qLLsetn~s 791 (1860)
+... +..+... ..++..|-+.-.+.++ +|+.+|..+|+++-.. ++..-+...--....+++...++.
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 376 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEF-------RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCH-------HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHH
Confidence 6533 2222222 3566666665443332 5788888888887432 222110000001234445555566
Q ss_pred HHHHHHHHHHHHHH
Q 000205 792 VLRAMEGFQVKIIT 805 (1860)
Q Consensus 792 VL~A~eeLLtslIk 805 (1860)
+....-..+..+++
T Consensus 377 v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 377 IVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555555544
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.95 E-value=0.061 Score=66.39 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=131.3
Q ss_pred CcchHHHHHhhhhhhcc-CcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhh----HHhhhcCcCCCCc
Q 000205 550 CQNKLPKLLGMLPSIAS-QSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGS----LQGVLQPKLLIDF 624 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~-hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~----LQ~lL~~s~~~~~ 624 (1860)
++..+......+-.++. +...+..++.++..-|+ +.++..|..|+|-++.+. .+...+. +.+.|.+
T Consensus 62 ~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~-~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d------ 132 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCE-DPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKD------ 132 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSS-SSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSC------
T ss_pred CHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCC------
Confidence 44444333333433433 33444556666664554 578899999999999885 3334444 5555543
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCcc--hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc----cchH-HHHHHHHHhh
Q 000205 625 KSERNICISIAASIHDVCRKDPDRG--VDLILSVAACIESRDPIIQALGLQSLAYLCEADV----IDFY-TAWDVIAKHM 697 (1860)
Q Consensus 625 ~~ewEv~IArAasIRDICk~rPdhG--~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV----VDf~-SAWkVLa~KL 697 (1860)
....++-+.+.|+..+|+..|+.- .++++.+.++++++++.+.+.|+.+|..+|+.+- +++. .+..-|-+.+
T Consensus 133 -~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l 211 (591)
T 2vgl_B 133 -EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL 211 (591)
T ss_dssp -SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC
Confidence 256778888999999999999833 3689999999999999999999999999999863 4442 2244444445
Q ss_pred cCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 698 LDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 698 ~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
. +.+|.....+.++++...... ++...++++.+=....+.++ .|+-+|-+++..+.
T Consensus 212 ~--~~~~~~q~~il~~l~~l~~~~---~~~~~~~l~~l~~~l~~~~~-------~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 212 N--ECTEWGQIFILDCLSNYNPKD---DREAQSICERVTPRLSHANS-------AVVLSAVKVLMKFL 267 (591)
T ss_dssp H--HCCHHHHHHHHHHHHTSCCCS---HHHHHHHHHHHTTCSCSSTT-------HHHHHHHHHHHHSC
T ss_pred C--CCCchHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHh
Confidence 4 347999888889886554322 23355677777665554432 56889999988875
No 11
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.94 E-value=0.18 Score=52.53 Aligned_cols=173 Identities=14% Similarity=0.059 Sum_probs=120.8
Q ss_pred cCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccch
Q 000205 548 VVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSE 627 (1860)
Q Consensus 548 e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~e 627 (1860)
..++..+..-++.|..++.. ..+|.+++.+. +.++..|..|++.+.++ ..+.+.|.|.++|.+. .
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~-----~~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~d~-------~ 89 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDE-RAVEPLIKALK-----DEDAWVRRAAADALGQI--GDERAVEPLIKALKDE-------D 89 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT-----CSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCS-------S
T ss_pred CCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc-----CCCHHHHHHHHHHHHhh--CCHHHHHHHHHHHcCC-------C
Confidence 34788888889999888753 45666665543 57788899999999887 3567899999888653 3
Q ss_pred hhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHH
Q 000205 628 RNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLA 707 (1860)
Q Consensus 628 wEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVl 707 (1860)
.++..+.+.++..+. ..+.++.+-++++++++.+...|..+|..+...+. ...|.+.+.+ .+|.|.
T Consensus 90 ~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~L~~~l~d--~~~~vr 155 (201)
T 3ltj_A 90 GWVRQSAAVALGQIG------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERA------VEPLIKALKD--EDGWVR 155 (201)
T ss_dssp HHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGG------HHHHHHHTTC--SSHHHH
T ss_pred HHHHHHHHHHHHHhC------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHH------HHHHHHHHcC--CCHHHH
Confidence 556666666666552 23577778888888899999999999999876544 4456666654 578888
Q ss_pred HHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 708 QSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 708 kSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
...++-++.... .+++..|.++..+.+ + .||.+|.++|++.+
T Consensus 156 ~~A~~aL~~~~~---------~~~~~~L~~~l~d~~----~---~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 156 QSAADALGEIGG---------ERVRAAMEKLAETGT----G---FARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHCS---------HHHHHHHHHHHHHCC----H---HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCc---------hhHHHHHHHHHhCCC----H---HHHHHHHHHHHHHH
Confidence 888777754321 234444555443322 2 57999999998765
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.93 E-value=0.13 Score=54.10 Aligned_cols=185 Identities=11% Similarity=0.102 Sum_probs=125.6
Q ss_pred hccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhh
Q 000205 564 IASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCR 643 (1860)
Q Consensus 564 LA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk 643 (1860)
+..++..+|.+++.+. +.++..|..|++.+.++ ..+.+.|.|.++|.+. .+++....+.++..+.
T Consensus 14 ~~~~~~~~~~L~~~L~-----~~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~~~- 78 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQ-----DDSYYVRRAAAYALGKI--GDERAVEPLIKALKDE-------DAWVRRAAADALGQIG- 78 (211)
T ss_dssp --CCGGGHHHHHHHTT-----CSSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCS-------CHHHHHHHHHHHHHHC-
T ss_pred hhcCHhHHHHHHHHHc-----CCCHHHHHHHHHHHHHh--CCccHHHHHHHHHcCC-------CHHHHHHHHHHHHhhC-
Confidence 4566777777777654 57788899999999876 3468899999988753 4566666666666663
Q ss_pred cCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHH
Q 000205 644 KDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEA 723 (1860)
Q Consensus 644 ~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaee 723 (1860)
..+.++.+-++++++++.+...|+++|..+...+++ ..|.+-+. +.+|.|....++-++..+.+
T Consensus 79 -----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~------~~L~~~l~--d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 79 -----DERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV------EPLIKALK--DEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH------HHHHHHTT--CSSHHHHHHHHHHHHHHCCG---
T ss_pred -----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH------HHHHHHHh--CCCHHHHHHHHHHHHHcCCH---
Confidence 245778888888999999999999999999876544 45555554 56899988888888644321
Q ss_pred hHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCcccchHHHHHhccChHHHHHHHHHH
Q 000205 724 YSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQ 800 (1860)
Q Consensus 724 Yee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLL 800 (1860)
+.+..|-.+..+.+ + .||.+|..+|+.+.- |+.+| ...+++...++.|..+...-+
T Consensus 143 ------~~~~~L~~~l~d~~----~---~vr~~a~~aL~~~~~---~~~~~-----~L~~~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 143 ------RAVEPLIKALKDED----G---WVRQSAADALGEIGG---ERVRA-----AMEKLAETGTGFARKVAVNYL 198 (211)
T ss_dssp ------GGHHHHHHHTTCSS----H---HHHHHHHHHHHHHCS---HHHHH-----HHHHHHHHCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCC----H---HHHHHHHHHHHHhCc---hhHHH-----HHHHHHhCCCHHHHHHHHHHH
Confidence 24455555543322 2 579999999998853 11111 244455556666666665555
No 13
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.75 E-value=0.26 Score=54.06 Aligned_cols=205 Identities=13% Similarity=-0.005 Sum_probs=136.3
Q ss_pred chHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchh
Q 000205 512 SSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLY 591 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~Lr 591 (1860)
..|+..|..++. +..++.+.-.+ + ..++.++.....+|..++.....++.++..+..++.++.++..|
T Consensus 41 ~~A~~~L~~~~~-------~~~~~~L~~~l---~--d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr 108 (280)
T 1oyz_A 41 ISSARVLQLRGG-------QDAVRLAIEFC---S--DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVR 108 (280)
T ss_dssp HHHHHHHHHHCC-------HHHHHHHHHHH---T--CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHccCC-------chHHHHHHHHH---c--CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHH
Confidence 557777776651 33455555444 2 34788888899999999877777888877775444446788899
Q ss_pred HHHHHHHHHHHhh----cccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhH
Q 000205 592 ATATRLLCQTWEI----NDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPII 667 (1860)
Q Consensus 592 A~ALRLLtkLWkk----qdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v 667 (1860)
..+++.+.++-.. .+.+.|.|.++|.+. .+++..+.+.++..+.. .+.++.+-++++++++.+
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~-------~~~vR~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~v 175 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAFDK-------STNVRRATAFAISVIND------KATIPLLINLLKDPNGDV 175 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhhCC-------CHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHH
Confidence 9999999999865 446667777666542 45666666666665532 247888888888889999
Q ss_pred HHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCch
Q 000205 668 QALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHE 747 (1860)
Q Consensus 668 ~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D 747 (1860)
...|..+|..+... --.+...|.+.+.+ .+|.|....++-++..+ +. .++..|-..-.+ +
T Consensus 176 r~~a~~aL~~~~~~----~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~~~-~~--------~~~~~L~~~l~d--~--- 235 (280)
T 1oyz_A 176 RNWAAFAININKYD----NSDIRDCFVEMLQD--KNEEVRIEAIIGLSYRK-DK--------RVLSVLCDELKK--N--- 235 (280)
T ss_dssp HHHHHHHHHHHTCC----CHHHHHHHHHHTTC--SCHHHHHHHHHHHHHTT-CG--------GGHHHHHHHHTS--S---
T ss_pred HHHHHHHHHhhccC----cHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhC-CH--------hhHHHHHHHhcC--c---
Confidence 99999999887521 23455666666654 47888888888886544 21 123333332221 1
Q ss_pred hhHHHHHHHHHHHhhcCc
Q 000205 748 LQWAKARASAFEALTQYE 765 (1860)
Q Consensus 748 ~~~~rVrsAAy~ALs~F~ 765 (1860)
.||.+|..||+.+.
T Consensus 236 ----~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 236 ----TVYDDIIEAAGELG 249 (280)
T ss_dssp ----SCCHHHHHHHHHHC
T ss_pred ----cHHHHHHHHHHhcC
Confidence 14778888888765
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.70 E-value=4.7 Score=50.46 Aligned_cols=205 Identities=11% Similarity=0.018 Sum_probs=118.1
Q ss_pred cchHHHHHhhhhhhccC--cccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcc---------cchhhHHhhhcCc
Q 000205 551 QNKLPKLLGMLPSIASQ--SVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIND---------RAFGSLQGVLQPK 619 (1860)
Q Consensus 551 p~l~l~LL~tLPsLA~h--k~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqd---------RafP~LQ~lL~~s 619 (1860)
+..+.....+|-.++.+ ...+|.++..+..+++ +.+...|..|+..+..+-+.-. .+.|.|.+.+.+
T Consensus 345 ~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d- 422 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND- 422 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-
T ss_pred CcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-
Confidence 45555555555554432 4568888888887775 4567788888988888765432 223333333332
Q ss_pred CCCCccchhhHHHHHHHHHHHHhhcC------CCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhc------cccchH
Q 000205 620 LLIDFKSERNICISIAASIHDVCRKD------PDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEA------DVIDFY 687 (1860)
Q Consensus 620 ~~~~~~~ewEv~IArAasIRDICk~r------PdhG~DLL~~IS~Clks~~~~v~ALALdALssLCea------DVVDf~ 687 (1860)
...+++.+.+.++-.+|..- +++-.++++.+-.+++++ +.+...|..++..+|+. +.+..|
T Consensus 423 ------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 423 ------QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp ------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred ------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 24555556666777777652 236778888888888775 77788888888888875 334322
Q ss_pred --HHHHHHHHhhcCCCCCHHHHHHHHHHh----cccCCChHH-hHHHHHHHHHHHHHhccc-----cCCCchhhHHHHHH
Q 000205 688 --TAWDVIAKHMLDYSLDPMLAQSLCILL----RWGAMDAEA-YSEASRTVLKILWDTGTT-----THLGHELQWAKARA 755 (1860)
Q Consensus 688 --SAWkVLa~KL~~~~~rPlVlkSLCeLf----p~gavdaee-Yee~~~~VI~~LW~~T~s-----~d~n~D~~~~rVrs 755 (1860)
..+..|-+-+...+.++.+....++.+ .....+... .++....+++.|.+...- ++. .+.....++.
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~-~~~~~~~~~~ 574 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE-DAQSLQELQS 574 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChh-hHHHHHHHHH
Confidence 345667777765343355554444444 333322222 334444455555543100 000 0122346788
Q ss_pred HHHHHhhcCc
Q 000205 756 SAFEALTQYE 765 (1860)
Q Consensus 756 AAy~ALs~F~ 765 (1860)
.+..+|+.+-
T Consensus 575 ~~~~~l~~l~ 584 (861)
T 2bpt_A 575 NILTVLAAVI 584 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887653
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.69 E-value=0.36 Score=57.97 Aligned_cols=229 Identities=8% Similarity=0.020 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHccCCCCC----chhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKLG----VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQ 576 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qa----vp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLr 576 (1860)
+..|+.+|..++..+|... -...++.|+-.+ .. .++.+....+.+|-.++.++ ..+|.+++
T Consensus 190 r~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 264 (530)
T 1wa5_B 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF--NS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 264 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG--GS---CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh--cc---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH
Confidence 4678888888876543210 011244444444 21 46788888899998888765 34555544
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHHhhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC
Q 000205 577 TILPMLHKNAKPVLYATATRLLCQTWEIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD 647 (1860)
Q Consensus 577 tL~pmLsk~s~~~LrA~ALRLLtkLWkkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd 647 (1860)
. +. ..++..+.-|+..+..+-...+ .+.|.|-.+|... .+++....+.++..+|...++
T Consensus 265 l----L~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~ 332 (530)
T 1wa5_B 265 L----IY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-------STLVQTPALRAVGNIVTGNDL 332 (530)
T ss_dssp H----TT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHH
T ss_pred H----Hc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-------ChhhHHHHHHHHHHHHcCCHH
Confidence 4 33 3567778888888888876533 6777787777642 477888888999999987765
Q ss_pred cc-----hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccch-----HHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 648 RG-----VDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDF-----YTAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 648 hG-----~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf-----~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
.. ..+++.+-.++++.++.+...|+.+|..|+....-.+ ......|-.-+.+ .++.+.+..|..+...
T Consensus 333 ~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 333 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNA 410 (530)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 22 2466777788888888999999999999986432111 1223344444433 3566666666655432
Q ss_pred CCC-hH--HhHHH--HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 718 AMD-AE--AYSEA--SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 718 avd-ae--eYee~--~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
... .. ++-+. ...++..|-++..+.+ + +|+..|..+|.++-
T Consensus 411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~---~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD----N---RIIEVTLDALENIL 456 (530)
T ss_dssp HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC----H---HHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC----H---HHHHHHHHHHHHHH
Confidence 211 11 22111 2347777777655433 2 45777777777654
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.59 E-value=0.082 Score=57.94 Aligned_cols=186 Identities=8% Similarity=0.020 Sum_probs=125.2
Q ss_pred CCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchh
Q 000205 549 VCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSER 628 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ew 628 (1860)
.++..+..-..+|..++. +..+|.+++.+. +.++..|..|++.+.++-. .+..++.+-++|...- ..+..+
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-----d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~~--~~d~~~ 105 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS-----DKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNMA--LNDKSA 105 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT-----CSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHHH--HHCSCH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc-----CCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHH--hcCCCH
Confidence 477888888888888873 445555554443 5677889999999988753 2334444444332100 011357
Q ss_pred hHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHH
Q 000205 629 NICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQ 708 (1860)
Q Consensus 629 Ev~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlk 708 (1860)
++..+.+.++..+|..+|....+.++.+..+++++++.+...|..+|..+...++ ...|.+-+. +.+|.|..
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~------~~~L~~~l~--d~~~~vr~ 177 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKAT------IPLLINLLK--DPNGDVRN 177 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CC------HHHHHHHHT--CSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHH------HHHHHHHHc--CCCHHHHH
Confidence 7888899999999988887778899999999999999999999999988877554 344555554 45788887
Q ss_pred HHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 709 SLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 709 SLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
..+.-++....+. .+++..|.....+++ + .||.+|..+|++..
T Consensus 178 ~a~~aL~~~~~~~-------~~~~~~L~~~l~d~~----~---~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 178 WAAFAININKYDN-------SDIRDCFVEMLQDKN----E---EVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHTCCC-------HHHHHHHHHHTTCSC----H---HHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccCc-------HHHHHHHHHHhcCCC----H---HHHHHHHHHHHHhC
Confidence 7777775443222 234555555544322 2 57999999999886
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.54 E-value=1.1 Score=53.97 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=167.6
Q ss_pred chHHHHHHHHHccC--CCC-C--chhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHH
Q 000205 512 SSAVDAFATVGKMD--PKL-G--VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQ 576 (1860)
Q Consensus 512 ~~al~~L~~L~k~d--P~q-a--vp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLr 576 (1860)
..++..+..+.... |.. . -...++.|+-.+ .. ..++.++...+.+|-.++.+. -.+|.+++
T Consensus 105 ~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L--~~--~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 180 (530)
T 1wa5_B 105 LSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM--RE--NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ 180 (530)
T ss_dssp HHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT--ST--TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh--CC--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH
Confidence 55777777765542 210 0 012456666655 33 237888888899998888753 45777777
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcC-C
Q 000205 577 TILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKD-P 646 (1860)
Q Consensus 577 tL~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~r-P 646 (1860)
.+. ..++..+..|++.+..+-... ..+.|.|-++|.. ...++....+.++..+|... |
T Consensus 181 lL~-----~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 181 LLY-----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-------NKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHH-----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-------CCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHc-----CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-------CCHHHHHHHHHHHHHHhCCCCC
Confidence 776 257888999999999887643 3467777777764 24567778889999999876 5
Q ss_pred C----cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc--cch-H--HHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 647 D----RGVDLILSVAACIESRDPIIQALGLQSLAYLCEADV--IDF-Y--TAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 647 d----hG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV--VDf-~--SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
. .-...++.+-..+++.++.+...|+.+|..||...- +.. . ..-..|-.-+.+ .++.+....++.++..
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQTPALRAVGNI 326 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHHHHHHHHHHH
Confidence 3 224567777788888889999999999999997531 111 1 223445555553 4788888888888766
Q ss_pred CCChHHh-HH-HHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc---cccccccCCcccchHHHHHhccChHH
Q 000205 718 AMDAEAY-SE-ASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV---SHIDKNILDFKQRSFEILISETNPVV 792 (1860)
Q Consensus 718 avdaeeY-ee-~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I---e~Lpe~iPd~~gs~y~qLLsetn~sV 792 (1860)
....++. +. ....++..|-.+-.+.+ + .|+.+|..+|++..- +++..-+...--....+++...++++
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~------~-~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPK------E-NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSC------H-HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCC------H-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 6443322 22 22367777777655432 1 568888888887652 12111100000012344555556666
Q ss_pred HHHHHHHHHHHHH
Q 000205 793 LRAMEGFQVKIIT 805 (1860)
Q Consensus 793 L~A~eeLLtslIk 805 (1860)
.......+..+..
T Consensus 400 ~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 400 KKEACWAISNASS 412 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6655555555544
No 18
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.43 E-value=0.27 Score=58.39 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=120.7
Q ss_pred hhHHHHHHH---HhhcccCccCCcchHHHHHhhhhhhcc-CcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc-
Q 000205 531 PLLLAILFY---SNMFTRKDVVCQNKLPKLLGMLPSIAS-QSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIN- 605 (1860)
Q Consensus 531 p~Ll~VL~f---kL~~~k~~e~~p~l~l~LL~tLPsLA~-hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq- 605 (1860)
......+|| |+ ++++ |...+..++-.+-.++. ...++ +|..+|+.=++ ++++-.|+.|+|-||++=..+
T Consensus 63 ~~e~t~lf~~v~kl-~~s~---d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~~m 136 (355)
T 3tjz_B 63 TTEATEAFFAMTKL-FQSN---DPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMT-GKEDSYRGPAVRALCQITDSTM 136 (355)
T ss_dssp HHHHHHHHHHHHGG-GGCC---CHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHH-SSCHHHHHHHHHHHHHHCCTTT
T ss_pred hhHHHHHHHHHHHH-hcCC---CHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcC-CCcHhHHHHHHHHHhcCCCHHH
Confidence 334556666 23 2332 34444433333333333 35566 77877764343 578999999999999994332
Q ss_pred -ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhcccc
Q 000205 606 -DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVI 684 (1860)
Q Consensus 606 -dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVV 684 (1860)
+-+.|.+.+.|.+. .--++=+.+-|+-.+|...||.=..++..+++++.++|+.+++-|+-+++.+|++|-.
T Consensus 137 ~~~l~~~lk~~L~d~-------~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 137 LQAIERYMKQAIVDK-------VPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp HHHHHHHHHHHHTCS-------SHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 23344444444432 2234455556677889999985556899999999999999999999999999998732
Q ss_pred chHHHHHHHHHhhcCC-CCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhc
Q 000205 685 DFYTAWDVIAKHMLDY-SLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQ 763 (1860)
Q Consensus 685 Df~SAWkVLa~KL~~~-~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~ 763 (1860)
+-.-+-+++... -..|...-.+.++++....+. -++.+.++++.|=..-.+.++ .|.=+|-+++-.
T Consensus 210 ----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d--~~~~~~~~~~~l~~~L~~~~~-------aVvyEa~k~I~~ 276 (355)
T 3tjz_B 210 ----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE--DGSRDSPLFDFIESCLRNKHE-------MVVYEAASAIVN 276 (355)
T ss_dssp ----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCCCSSH-------HHHHHHHHHHTC
T ss_pred ----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHcCCCh-------HHHHHHHHHHHh
Confidence 333344445442 236887777777664333221 134566777777776554432 457788888877
Q ss_pred Cc
Q 000205 764 YE 765 (1860)
Q Consensus 764 F~ 765 (1860)
++
T Consensus 277 l~ 278 (355)
T 3tjz_B 277 LP 278 (355)
T ss_dssp --
T ss_pred cc
Confidence 54
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.22 E-value=1.1 Score=53.54 Aligned_cols=273 Identities=13% Similarity=0.059 Sum_probs=167.8
Q ss_pred cchHHHHHHHHHccCCCCCc-----hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKLGV-----PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVV 575 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qav-----p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VL 575 (1860)
+..|+..+..++...+.... ...++.|+-.+ .. ..++.++..-+.+|-.++.+. -.+|.++
T Consensus 91 ~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL--~~--~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 166 (528)
T 4b8j_A 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL--TR--EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166 (528)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH--TC--TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh--CC--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence 35677778777655431100 12355656555 33 335888999999999888863 2455555
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHHhhccc---------chhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCC
Q 000205 576 QTILPMLHKNAKPVLYATATRLLCQTWEINDR---------AFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDP 646 (1860)
Q Consensus 576 rtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdR---------afP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rP 646 (1860)
+.+. ..++..+..|+..+..+-...+. +.|.|-++|... ...++....+.++..+|...|
T Consensus 167 ~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~------~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 167 KLLG-----SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH------TKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHTT-----CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT------CCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhc-----CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCCC
Confidence 5543 35778899999999988765442 556666666432 356788888999999999877
Q ss_pred Ccc----hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccch-----HHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 647 DRG----VDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDF-----YTAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 647 dhG----~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf-----~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
... ...++.+-..+.+.++.+...|+.+|..||...--.+ ......|-+-+.. .++.+....+..++..
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHH
Confidence 533 4567777788888899999999999999997532111 1234455555554 3688888888888766
Q ss_pred CCChHH-hHH-HHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc---cccccccCCcccchHHHHHhccChHH
Q 000205 718 AMDAEA-YSE-ASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV---SHIDKNILDFKQRSFEILISETNPVV 792 (1860)
Q Consensus 718 avdaee-Yee-~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I---e~Lpe~iPd~~gs~y~qLLsetn~sV 792 (1860)
.....+ .+. ....++..|-++-.+.. ++ .|+.+|..+|++..- +.+...+...-=....+++...+.++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~---~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNL---KK---SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCC---CH---HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCC---cH---HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 553322 222 22456777777654431 11 567888888877642 11111000000012445555556666
Q ss_pred HHHHHHHHHHHHHH
Q 000205 793 LRAMEGFQVKIITH 806 (1860)
Q Consensus 793 L~A~eeLLtslIk~ 806 (1860)
...+...+..+...
T Consensus 388 ~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 388 KKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 66666666555544
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.04 E-value=0.34 Score=51.10 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHH
Q 000205 571 IPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDV 641 (1860)
Q Consensus 571 iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDI 641 (1860)
+|.+++.++ ..++..+.-|++.+..+-..++ .+.|.|-++|... ..++....+.++..+
T Consensus 4 i~~L~~~L~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 4 VEKLVKLLT-----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANI 71 (252)
T ss_dssp HHHHHHHTT-----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 444444443 3457778888888888877665 4677777777653 367788889999999
Q ss_pred hhcCCCcch-----hhHHHHHHhhccCchhHHHHhHHHHHHhhhccc--cch---HHHHHHHHHhhcCCCCCHHHHHHHH
Q 000205 642 CRKDPDRGV-----DLILSVAACIESRDPIIQALGLQSLAYLCEADV--IDF---YTAWDVIAKHMLDYSLDPMLAQSLC 711 (1860)
Q Consensus 642 Ck~rPdhG~-----DLL~~IS~Clks~~~~v~ALALdALssLCeaDV--VDf---~SAWkVLa~KL~~~~~rPlVlkSLC 711 (1860)
|..+|+.-. ..++.+-.+++++++.+...|+.+|..||..+- .+. ......|-+-+.+ .+|.+...-|
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~ 149 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAA 149 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHH
Confidence 988775222 457777788888899999999999999995321 110 1345566655654 4688999999
Q ss_pred HHhcccCCChHHhHH--HHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCc---c-cchHHHHH
Q 000205 712 ILLRWGAMDAEAYSE--ASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDF---K-QRSFEILI 785 (1860)
Q Consensus 712 eLfp~gavdaeeYee--~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~---~-gs~y~qLL 785 (1860)
..+.....+.++..+ ....++..|-++..+.+ + .|+..|..+|++.--. -++....+ . -....+++
T Consensus 150 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~---~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD----S---EVQKEAARALANIASG-PTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----H---HHHHHHHHHHHHHTTS-BHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC----H---HHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence 999877665443322 23568888888766433 2 5678888888776521 11110000 0 01344555
Q ss_pred hccChHHHHHHHHHHHHHHHHHH
Q 000205 786 SETNPVVLRAMEGFQVKIITHEH 808 (1860)
Q Consensus 786 setn~sVL~A~eeLLtslIk~E~ 808 (1860)
...++++....-..+..+....-
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred CCCcHHHHHHHHHHHHHHHcCCC
Confidence 66667777777777766655443
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.04 E-value=0.95 Score=52.08 Aligned_cols=164 Identities=14% Similarity=0.115 Sum_probs=104.1
Q ss_pred chHHHHHHHHHccC-CCCCchhHHHHHHHHhhcccCccC-CcchHHHHHhhhhhhccC------cccHHHHHHHHHHhhh
Q 000205 512 SSAVDAFATVGKMD-PKLGVPLLLAILFYSNMFTRKDVV-CQNKLPKLLGMLPSIASQ------SVMIPLVVQTILPMLH 583 (1860)
Q Consensus 512 ~~al~~L~~L~k~d-P~qavp~Ll~VL~fkL~~~k~~e~-~p~l~l~LL~tLPsLA~h------k~~iP~VLrtL~pmLs 583 (1860)
..+.++++.+++.+ |...-|.+++.++-.+ .. .. ++..+...+.+|-.+..+ ...++.++..+...+.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l--~~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 182 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANV--TN--PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH--HC--TTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHh--cc--CCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhC
Confidence 67888888888875 5322488888888776 22 22 556666666665554432 2334566666665664
Q ss_pred cCC-CCchhHHHHHHHHHHHhh---c--ccch-hhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC----cch-h
Q 000205 584 KNA-KPVLYATATRLLCQTWEI---N--DRAF-GSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD----RGV-D 651 (1860)
Q Consensus 584 k~s-~~~LrA~ALRLLtkLWkk---q--dRaf-P~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd----hG~-D 651 (1860)
... ++..|..|++.+..+-.. + ...+ +++-..+... ..+...++..+.+.++..++...|+ +-. +
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~ 259 (462)
T 1ibr_B 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA---TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259 (462)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH---TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 577889999998874321 1 0001 1222222111 0123457777888899999988774 334 7
Q ss_pred hHHHHHHhhccCchhHHHHhHHHHHHhhhcc
Q 000205 652 LILSVAACIESRDPIIQALGLQSLAYLCEAD 682 (1860)
Q Consensus 652 LL~~IS~Clks~~~~v~ALALdALssLCeaD 682 (1860)
+++.+-.+.++.++.+...|++.+..+|+..
T Consensus 260 l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 7777777888888999999999999999874
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.03 E-value=0.22 Score=59.51 Aligned_cols=272 Identities=11% Similarity=0.080 Sum_probs=168.6
Q ss_pred cchHHHHHHHHHccCCCCCc----hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc----------cHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKLGV----PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV----------MIPLVVQ 576 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qav----p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~----------~iP~VLr 576 (1860)
+..|+.+|..++..++.... ...++.|+-.+ .. .++.++...+.+|-.++.+.. .+|.+++
T Consensus 135 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~---~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~ 209 (528)
T 4b8j_A 135 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--GS---SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209 (528)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT--TC---SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh--cC---CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHH
Confidence 46678888888765443210 12355555554 22 377888888888888876532 3444444
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHHhhc--------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc
Q 000205 577 TILPMLHKNAKPVLYATATRLLCQTWEIN--------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR 648 (1860)
Q Consensus 577 tL~pmLsk~s~~~LrA~ALRLLtkLWkkq--------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh 648 (1860)
++.++.++..+..++..+..+-... ..+.|.|-++|... ..++....+.++..+|...++.
T Consensus 210 ----lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~~~~~ 278 (528)
T 4b8j_A 210 ----QLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-------DEEVLTDACWALSYLSDGTNDK 278 (528)
T ss_dssp ----TCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSSCHHH
T ss_pred ----HHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCCHHH
Confidence 3433456778888888888887653 34677777777542 4678888889999999765542
Q ss_pred -----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhcc------ccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhccc
Q 000205 649 -----GVDLILSVAACIESRDPIIQALGLQSLAYLCEAD------VIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWG 717 (1860)
Q Consensus 649 -----G~DLL~~IS~Clks~~~~v~ALALdALssLCeaD------VVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~g 717 (1860)
....++.+-.++.+.++.+...|+.+|..||... +++ ......|-.-+.. +.++.+.+..|..++..
T Consensus 279 ~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~-~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 279 IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQ-NLKKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHS-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcC-CCcHHHHHHHHHHHHHH
Confidence 2246777778888888999999999999999743 122 2345566666665 54889999999888765
Q ss_pred CCChHH-hHHH-HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCc----ccchHHHHHhccChH
Q 000205 718 AMDAEA-YSEA-SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDF----KQRSFEILISETNPV 791 (1860)
Q Consensus 718 avdaee-Yee~-~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~----~gs~y~qLLsetn~s 791 (1860)
+....+ .... ...++..|-+.-.+.+ + +|+.+|..+|+++...-=|+....+ .-.....++...++.
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~---~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 429 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTAE----F---DIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR 429 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHSC----H---HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcCC----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 543322 2222 2355666666544332 2 5688888888876532111111100 011345566666777
Q ss_pred HHHHHHHHHHHHHHHH
Q 000205 792 VLRAMEGFQVKIITHE 807 (1860)
Q Consensus 792 VL~A~eeLLtslIk~E 807 (1860)
+....-..+..+++..
T Consensus 430 v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 430 IVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665543
No 23
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.83 E-value=0.47 Score=49.42 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=114.5
Q ss_pred hhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhh
Q 000205 581 MLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACI 660 (1860)
Q Consensus 581 mLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Cl 660 (1860)
+|. +.++..|..|++.+.++- .+.+.|.|.++|.+. .+++....+.++..+ . ..+.++.+-+.+
T Consensus 22 ~L~-~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~-------~~~vr~~a~~~L~~~---~---~~~~~~~L~~~l 85 (201)
T 3ltj_A 22 NLQ-DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDE-------DAWVRRAAADALGQI---G---DERAVEPLIKAL 85 (201)
T ss_dssp HTT-CSCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCS-------SHHHHHHHHHHHHHH---C---CGGGHHHHHHHT
T ss_pred Hhc-CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCC-------CHHHHHHHHHHHHhh---C---CHHHHHHHHHHH
Confidence 443 577888999999988753 357899999988643 344555555555554 2 235677888888
Q ss_pred ccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhcc
Q 000205 661 ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGT 740 (1860)
Q Consensus 661 ks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~ 740 (1860)
+++++.+...|+++|..+...+ +...|.+.+. +.+|.|....++-++.... .+.+..|-.+..
T Consensus 86 ~d~~~~vr~~a~~aL~~~~~~~------~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~ 148 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGDER------AVEPLIKALK--DEDWFVRIAAAFALGEIGD---------ERAVEPLIKALK 148 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGG------GHHHHHHHTT--CSSHHHHHHHHHHHHHHTC---------GGGHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHc--CCCHHHHHHHHHHHHHhCC---------HHHHHHHHHHHc
Confidence 8889999999999999987754 4455666664 5589999888888864432 124445555543
Q ss_pred ccCCCchhhHHHHHHHHHHHhhcCcccccccccCCcccchHHHHHhccChHHHHHHHHHHH
Q 000205 741 TTHLGHELQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQV 801 (1860)
Q Consensus 741 s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLLt 801 (1860)
+++ + .||.+|..+|+.+.-. +.+| ...+++...++.|..+...-+.
T Consensus 149 d~~----~---~vr~~A~~aL~~~~~~---~~~~-----~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 149 DED----G---WVRQSAADALGEIGGE---RVRA-----AMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp CSS----H---HHHHHHHHHHHHHCSH---HHHH-----HHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCC----H---HHHHHHHHHHHHhCch---hHHH-----HHHHHHhCCCHHHHHHHHHHHH
Confidence 322 2 5799999999998521 1111 2344555666666666555443
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.72 E-value=0.36 Score=59.59 Aligned_cols=229 Identities=11% Similarity=0.107 Sum_probs=145.3
Q ss_pred chHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchh
Q 000205 512 SSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLY 591 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~Lr 591 (1860)
+.++-.+..+++.+|... ...+..+.--+ + ..||..+-.-|.+|..++ .....+.++..+...+. +.++..|
T Consensus 67 rl~yl~l~~~~~~~~e~~-~l~~n~l~kdL---~--~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~L~-d~~~~VR 138 (591)
T 2vgl_B 67 KLVYLYLMNYAKSQPDMA-IMAVNSFVKDC---E--DPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKCLK-DEDPYVR 138 (591)
T ss_dssp HHHHHHHHHHHHHSHHHH-HTTHHHHGGGS---S--SSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHHSS-CSCHHHH
T ss_pred HHHHHHHHHHcccCchHH-HHHHHHHHHHc---C--CCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHcC-CCChHHH
Confidence 446666666777655542 22222221111 2 247777777799999987 44556666666665664 7889999
Q ss_pred HHHHHHHHHHHhhccc------chhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-chhh----HHHHHHhh
Q 000205 592 ATATRLLCQTWEINDR------AFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-GVDL----ILSVAACI 660 (1860)
Q Consensus 592 A~ALRLLtkLWkkqdR------afP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-G~DL----L~~IS~Cl 660 (1860)
..|...+.++.++++. .+|.|.++|.+. ...+..+.+.++-++|..+|+. -.++ +..+-..+
T Consensus 139 k~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~-------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l 211 (591)
T 2vgl_B 139 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS-------NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL 211 (591)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC
Confidence 9999999999998775 456777777643 3467788889999999999963 2333 33333445
Q ss_pred ccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccC--C--ChHHhHHHHHHHHHHHH
Q 000205 661 ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGA--M--DAEAYSEASRTVLKILW 736 (1860)
Q Consensus 661 ks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~ga--v--daeeYee~~~~VI~~LW 736 (1860)
.+.++-.+...++.+..+|..+-=+....-+.+.+.++ ..+|.|...-++.+.... + +.+........+...|=
T Consensus 212 ~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~--~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 212 NECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS--HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp HHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC--SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 55678888999999999996543333334445555555 357888888888885443 2 22223333334444333
Q ss_pred HhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 737 DTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 737 ~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
... +++ + .||-.|..+|+..-
T Consensus 290 ~L~-~~d----~---~vr~~aL~~l~~i~ 310 (591)
T 2vgl_B 290 TLL-SGE----P---EVQYVALRNINLIV 310 (591)
T ss_dssp HHT-TSC----H---HHHHHHHHHHHHHH
T ss_pred HHh-cCC----c---cHHHHHHHHHHHHH
Confidence 332 222 2 45888888887654
No 25
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.61 E-value=0.5 Score=50.45 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=128.3
Q ss_pred CcchHHHHHhhhhhhccC----------cccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcc---------cchh
Q 000205 550 CQNKLPKLLGMLPSIASQ----------SVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIND---------RAFG 610 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~h----------k~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqd---------RafP 610 (1860)
++..+..-+.+|-.+... .-.+|.+++. |. ..++..+.-|++.+..+-..++ .+.|
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~l----L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL----LS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHG----GG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHH----Hc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 667777766666443331 1234444444 43 3457788888888888876433 3677
Q ss_pred hHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc--
Q 000205 611 SLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVDLILSVAACIESRDPIIQALGLQSLAYLCEADV-- 683 (1860)
Q Consensus 611 ~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV-- 683 (1860)
.|-++|... ..++....+.++..+|...+.+ ....++.+-++++++++.+...|+.+|..||..+-
T Consensus 100 ~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 100 ALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHcCC-------CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 777777652 4677888889999998876643 23467777788888899999999999999998541
Q ss_pred cch---HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHH-hHHH-HHHHHHHHHHhccccCCCchhhHHHHHHHHH
Q 000205 684 IDF---YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEA-YSEA-SRTVLKILWDTGTTTHLGHELQWAKARASAF 758 (1860)
Q Consensus 684 VDf---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaee-Yee~-~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy 758 (1860)
... ..+-..|-.-+.+ .+|.+...-|..+.......++ ...+ ...++..|-++..+.++ +|+..|.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-------~v~~~A~ 243 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE-------KIQKEAQ 243 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSS-------HHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCH-------HHHHHHH
Confidence 111 2234455555554 3788888888888765543322 2222 33478888887765543 5688888
Q ss_pred HHhhcC
Q 000205 759 EALTQY 764 (1860)
Q Consensus 759 ~ALs~F 764 (1860)
.+|++.
T Consensus 244 ~~L~~l 249 (252)
T 4db8_A 244 EALEKL 249 (252)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 888765
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.39 E-value=15 Score=46.18 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=89.0
Q ss_pred chHHHHHHHHHccC-CCCCchhHHHHHHHHhhcccCccC-CcchHHHHHhhhhhhccC------cccHHHHHHHHHHhhh
Q 000205 512 SSAVDAFATVGKMD-PKLGVPLLLAILFYSNMFTRKDVV-CQNKLPKLLGMLPSIASQ------SVMIPLVVQTILPMLH 583 (1860)
Q Consensus 512 ~~al~~L~~L~k~d-P~qavp~Ll~VL~fkL~~~k~~e~-~p~l~l~LL~tLPsLA~h------k~~iP~VLrtL~pmLs 583 (1860)
..+++++..+++.+ |....|.+++.++-.+ .. +. ++..+...+++|..+... ...++.++..+...+.
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l--~~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~ 182 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPELIPQLVANV--TN--PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHH--HC--TTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHHHHH--hC--CCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhc
Confidence 56777777777654 3122477888877776 22 22 566666677777666543 2335555555554554
Q ss_pred cC-CCCchhHHHHHHHHHHHhhcc----------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc----
Q 000205 584 KN-AKPVLYATATRLLCQTWEIND----------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR---- 648 (1860)
Q Consensus 584 k~-s~~~LrA~ALRLLtkLWkkqd----------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh---- 648 (1860)
.+ .++..|..|++.+..+-..-+ .+.+.+...+. +.+.+++.+...++..+++..|+.
T Consensus 183 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 255 (876)
T 1qgr_A 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-------CPDTRVRVAALQNLVKIMSLYYQYMETY 255 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-------CSSHHHHHHHHHHHHHHHHHSGGGCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22 146778888888887653211 12223332221 123455556666677777666642
Q ss_pred ch-hhHHHHHHhhccCchhHHHHhHHHHHHhhhc
Q 000205 649 GV-DLILSVAACIESRDPIIQALGLQSLAYLCEA 681 (1860)
Q Consensus 649 G~-DLL~~IS~Clks~~~~v~ALALdALssLCea 681 (1860)
=. +++..+-.+.++.++.+...|++.+..+|+.
T Consensus 256 ~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 256 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 11 4555555555555666666666666666654
No 27
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.85 E-value=0.63 Score=48.42 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=108.9
Q ss_pred CCCCchhHHHHHHHHHHHhhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----ch
Q 000205 585 NAKPVLYATATRLLCQTWEIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GV 650 (1860)
Q Consensus 585 ~s~~~LrA~ALRLLtkLWkkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~ 650 (1860)
..++..+.-|++.+..+-..++ .+.|.|-++|... ..++....+.++..+|..+|+. ..
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 3566677777777777764432 3567777777653 3567778888999999877752 13
Q ss_pred hhHHHHHHhhccCchhHHHHhHHHHHHhhhccccc--h---HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHh-
Q 000205 651 DLILSVAACIESRDPIIQALGLQSLAYLCEADVID--F---YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAY- 724 (1860)
Q Consensus 651 DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVD--f---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeY- 724 (1860)
+.|+.+-.++++.++.+...|..+|..||..+--. . ...-..|-+-+.+ .++.+.+.-|..+.....+.++.
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCcHHH
Confidence 35677778889889999999999999999643211 1 1234555555654 37888888888886555443332
Q ss_pred HHH-HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 725 SEA-SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 725 ee~-~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
..+ ...+++.|-++..+.++ +|+.+|..+|+++
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~-------~v~~~a~~aL~~l 207 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENE-------KIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCH-------HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCCCH-------HHHHHHHHHHHHH
Confidence 222 34578888887665432 4577777777653
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.11 E-value=1.4 Score=46.94 Aligned_cols=177 Identities=14% Similarity=0.069 Sum_probs=118.8
Q ss_pred cccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh---------cccchhhHHhhhcCcCCCCccchhhHHHHHHHHH
Q 000205 568 SVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI---------NDRAFGSLQGVLQPKLLIDFKSERNICISIAASI 638 (1860)
Q Consensus 568 k~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk---------qdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasI 638 (1860)
+.-+|.+.+.|+ .+++..+.-|.+.+.++-.. +..+.|.|-++|... ..++....+.++
T Consensus 11 ~~~~~~~~~~L~-----s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L 78 (252)
T 4db8_A 11 GSELPQMTQQLN-----SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWAL 78 (252)
T ss_dssp TCSHHHHHHHHH-----SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHH
T ss_pred cchHHHHHHHHc-----CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHH
Confidence 344555555555 35666777777777554332 234567777777653 267788888999
Q ss_pred HHHhhcCCCcch-----hhHHHHHHhhccCchhHHHHhHHHHHHhhhccccc-----hHHHHHHHHHhhcCCCCCHHHHH
Q 000205 639 HDVCRKDPDRGV-----DLILSVAACIESRDPIIQALGLQSLAYLCEADVID-----FYTAWDVIAKHMLDYSLDPMLAQ 708 (1860)
Q Consensus 639 RDICk~rPdhG~-----DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVD-----f~SAWkVLa~KL~~~~~rPlVlk 708 (1860)
..+|..+|+.-. ..++.+-+.++++++.+...|+.+|..||..+-.. -..+...|-+-+.+ .++.+..
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~ 156 (252)
T 4db8_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQ 156 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC--CCHHHHH
Confidence 999987775222 25666778888889999999999999999875322 11355666666764 4888888
Q ss_pred HHHHHhcccCCChHHhHHH--HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 709 SLCILLRWGAMDAEAYSEA--SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 709 SLCeLfp~gavdaeeYee~--~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.-|..+.......++..+. ...++..|-++-.+.+ + +|+..|..+|+++-
T Consensus 157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~---~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN----E---QILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSS----H---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCC----H---HHHHHHHHHHHHHh
Confidence 8888887766644333222 3567888888765433 2 46788888887764
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.47 E-value=0.7 Score=57.61 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=103.0
Q ss_pred cCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccc----hhhHHhhhcCcCCCCccchhhHHHHHHHHHHHH
Q 000205 566 SQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRA----FGSLQGVLQPKLLIDFKSERNICISIAASIHDV 641 (1860)
Q Consensus 566 ~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRa----fP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDI 641 (1860)
.+...+.+++.++..-|. +.++..|+.|+|.++.+-. +.. .|.+.+.|.+. ...++-+.+.|+..+
T Consensus 100 ~~~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~--~~~~~~l~~~l~~~L~~~-------~~~VRk~A~~al~~l 169 (618)
T 1w63_A 100 ERQDVHLLMTNCIKNDLN-HSTQFVQGLALCTLGCMGS--SEMCRDLAGEVEKLLKTS-------NSYLRKKAALCAVHV 169 (618)
T ss_dssp CCHHHHHHHHHHHHHHHS-CSSSHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHSC-------CHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 344545566677664554 6889999999999999974 334 56666666542 457888889999999
Q ss_pred hhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccc------cchH-HHHHHHHHhhcC---------CCCCHH
Q 000205 642 CRKDPDRGVDLILSVAACIESRDPIIQALGLQSLAYLCEADV------IDFY-TAWDVIAKHMLD---------YSLDPM 705 (1860)
Q Consensus 642 Ck~rPdhG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDV------VDf~-SAWkVLa~KL~~---------~~~rPl 705 (1860)
++..|+.=.+++..+...+.++++.++..|+.++..+|+.+- ..+. ..++.|..-... .-.+|.
T Consensus 170 ~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 170 IRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp HHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred HHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 999998666889999999999999999999999999998641 1111 123333322110 024799
Q ss_pred HHHHHHHHhcccCC
Q 000205 706 LAQSLCILLRWGAM 719 (1860)
Q Consensus 706 VlkSLCeLfp~gav 719 (1860)
....+.++|+....
T Consensus 250 ~q~~il~~L~~l~~ 263 (618)
T 1w63_A 250 LQVRILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999975554
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.92 E-value=0.95 Score=47.05 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=112.3
Q ss_pred HHHhHhcCCCc--cchHHHHHHHHHccCCCCC----chhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc-c---
Q 000205 500 IASVLVIHPSL--GSSAVDAFATVGKMDPKLG----VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS-V--- 569 (1860)
Q Consensus 500 lLsaLLlh~s~--~~~al~~L~~L~k~dP~qa----vp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk-~--- 569 (1860)
.+..|+-+++. +..++..|..++..++... -...++.++-.+ . ..++.++..-+.+|-.++.+. .
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~---~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL--S---SPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT--T---CSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH--c---CCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 44555655554 3668888888886554431 012355555555 2 237888889999999988643 2
Q ss_pred ------cHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHH
Q 000205 570 ------MIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISI 634 (1860)
Q Consensus 570 ------~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IAr 634 (1860)
.+|.+++.+. +.++..+.-|...+..+=..+ ..+.|.|-++|... ..++....
T Consensus 91 ~i~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~v~~~a 158 (210)
T 4db6_A 91 AVIDAGALPALVQLLS-----SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEA 158 (210)
T ss_dssp HHHHTTCHHHHHHHTT-----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHc-----CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-------CHHHHHHH
Confidence 4566655543 356788888888888886432 34567777777642 45778888
Q ss_pred HHHHHHHhhcCCCc-----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhc
Q 000205 635 AASIHDVCRKDPDR-----GVDLILSVAACIESRDPIIQALGLQSLAYLCEA 681 (1860)
Q Consensus 635 AasIRDICk~rPdh-----G~DLL~~IS~Clks~~~~v~ALALdALssLCea 681 (1860)
+.++..+|...|+. ....++.+.+.+++.++.+...|..+|..||++
T Consensus 159 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 88999999976652 224567777888888999999999999999863
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.41 E-value=2.7 Score=52.41 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=118.2
Q ss_pred CCcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhccc----chhhHHhhhcCcCCCCc
Q 000205 549 VCQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDR----AFGSLQGVLQPKLLIDF 624 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdR----afP~LQ~lL~~s~~~~~ 624 (1860)
.||..+-.-|.+|..++. +..++.++..+...|. +.++..|-.|+..+.++.++.+. .+|.++++|.+.
T Consensus 119 ~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~----- 191 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK----- 191 (618)
T ss_dssp SSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC-----
T ss_pred CCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC-----
Confidence 377777777899988886 4455666666665554 68899999999999999998874 445555555432
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCc---chhhHHHH----HHhhc-----------cCchhHHHHhHHHHHHhhhccccch
Q 000205 625 KSERNICISIAASIHDVCRKDPDR---GVDLILSV----AACIE-----------SRDPIIQALGLQSLAYLCEADVIDF 686 (1860)
Q Consensus 625 ~~ewEv~IArAasIRDICk~rPdh---G~DLL~~I----S~Clk-----------s~~~~v~ALALdALssLCeaDVVDf 686 (1860)
...+..+.+.++.++|..+|+. =..+++.+ ..+.+ ..++-.+...++.+..+|..+-=.-
T Consensus 192 --d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~ 269 (618)
T 1w63_A 192 --NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS 269 (618)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH
Confidence 3467788889999999988862 12333333 33332 2478888999999999998641000
Q ss_pred HHHHHHHHHhh---cCC-CCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhh
Q 000205 687 YTAWDVIAKHM---LDY-SLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALT 762 (1860)
Q Consensus 687 ~SAWkVLa~KL---~~~-~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs 762 (1860)
-..-+.|..-+ ... ...+.|..+-++.+.....+. +....+++.|=.+-.++++ .|+-.|..+|+
T Consensus 270 ~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~~~a~~~L~~~L~~~d~-------~vr~~aL~~L~ 338 (618)
T 1w63_A 270 EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLRVLAINILGRFLLNNDK-------NIRYVALTSLL 338 (618)
T ss_dssp HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHTCSST-------TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHhCCCC-------chHHHHHHHHH
Confidence 00011222211 110 123456655555554333222 2333455555555444443 23666777766
Q ss_pred cCc
Q 000205 763 QYE 765 (1860)
Q Consensus 763 ~F~ 765 (1860)
..-
T Consensus 339 ~i~ 341 (618)
T 1w63_A 339 KTV 341 (618)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.26 E-value=0.47 Score=54.60 Aligned_cols=131 Identities=10% Similarity=0.013 Sum_probs=79.8
Q ss_pred CCcchHHHHHhhhhhhccCc-----ccHH-HHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc-----------------
Q 000205 549 VCQNKLPKLLGMLPSIASQS-----VMIP-LVVQTILPMLHKNAKPVLYATATRLLCQTWEIN----------------- 605 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk-----~~iP-~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq----------------- 605 (1860)
.++.++...+++|..++.+. ..++ .++.++...+. +..+..+..|+..+..+-+..
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 36677777777776655332 1122 34444332332 456677888888877776653
Q ss_pred ------------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhhccCchhHHHHhH
Q 000205 606 ------------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD-RGVDLILSVAACIESRDPIIQALGL 672 (1860)
Q Consensus 606 ------------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd-hG~DLL~~IS~Clks~~~~v~ALAL 672 (1860)
+.+.|.+.+.|...+.-..+++|..+.+.+.++..+|...|+ .-..+++.+.+.+++.+..+.-.|+
T Consensus 308 ~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal 387 (462)
T 1ibr_B 308 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387 (462)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred cchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 233444444444322112345678888888888888888775 2234555666777777777777888
Q ss_pred HHHHHhhh
Q 000205 673 QSLAYLCE 680 (1860)
Q Consensus 673 dALssLCe 680 (1860)
.++..+++
T Consensus 388 ~~l~~l~~ 395 (462)
T 1ibr_B 388 MAFGCILE 395 (462)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHhc
Confidence 88888876
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.16 E-value=3.9 Score=49.52 Aligned_cols=253 Identities=11% Similarity=0.062 Sum_probs=143.1
Q ss_pred HHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 000205 533 LLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTW 602 (1860)
Q Consensus 533 Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLW 602 (1860)
.+|.|.-.+ .+ ..+|.++..-..+|-.++.+. -++|..++.+. ..++..+..|+..|..+-
T Consensus 101 ~ip~LV~lL--~~--~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~-----s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 101 LIPKFVSFL--GK--TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-----SPHAHISEQAVWALGNIA 171 (510)
T ss_dssp HHHHHHHHT--TC--TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH--CC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHH
Confidence 366666666 33 447888888888888887654 24666666554 367788889999888886
Q ss_pred hhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC-c----chhhHHHHHHhhccCchhHH
Q 000205 603 EIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD-R----GVDLILSVAACIESRDPIIQ 668 (1860)
Q Consensus 603 kkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd-h----G~DLL~~IS~Clks~~~~v~ 668 (1860)
...+ -+.|.|-.+|...+. ...........+.++..+|+.+.. . -...++.+.++++++++.+.
T Consensus 172 ~d~~~~r~~v~~~G~i~~Ll~lL~~~~~--~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 172 GDGSAFRDLVIKHGAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHHTCSSCG--GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred hCCHHHHHHHHHcCChHHHHHHHHhccc--hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 5432 345666666654321 112233444566788889986643 2 24577888899999999999
Q ss_pred HHhHHHHHHhhhccc--cch---HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHH--HHHHHHHHHHHhccc
Q 000205 669 ALGLQSLAYLCEADV--IDF---YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSE--ASRTVLKILWDTGTT 741 (1860)
Q Consensus 669 ALALdALssLCeaDV--VDf---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee--~~~~VI~~LW~~T~s 741 (1860)
.-|..+|..|++..- ... ...-..|-.-+.. .++.+...-++.++......+++-. ....++..|..+-.+
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence 999999999997542 111 1122333334443 3566666666666544332222211 223345555555443
Q ss_pred cCCCchhhHHHHHHHHHHHhhcCcc---cccccccCCcccchHHHHHhccChHHHHHHHHHHHHHHH
Q 000205 742 THLGHELQWAKARASAFEALTQYEV---SHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKIIT 805 (1860)
Q Consensus 742 ~d~n~D~~~~rVrsAAy~ALs~F~I---e~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLLtslIk 805 (1860)
.+ + .|+..|..+|++..- ++....+...-=.....++...+.++...+...+..+..
T Consensus 328 ~~----~---~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 328 PK----T---NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp SS----H---HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred CC----H---HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 22 1 356666667665431 111110000000124555666666666665555544443
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.67 E-value=2.9 Score=45.26 Aligned_cols=158 Identities=9% Similarity=0.060 Sum_probs=103.0
Q ss_pred chhhHHHHHHHHHHHHhhcCCC----cchhhHHHHHHhh-ccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCC
Q 000205 626 SERNICISIAASIHDVCRKDPD----RGVDLILSVAACI-ESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY 700 (1860)
Q Consensus 626 ~ewEv~IArAasIRDICk~rPd----hG~DLL~~IS~Cl-ks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~ 700 (1860)
..|..+.+-+.++..+++..|+ .=.+++..+...+ ++.++.+...|++++..||+.=-=+|..-...+-|.+-..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4799999999999999988543 2247788888888 4889999999999999999764445555554444443221
Q ss_pred --CCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc----c-----ccc
Q 000205 701 --SLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE----V-----SHI 769 (1860)
Q Consensus 701 --~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~----I-----e~L 769 (1860)
+.++.|..+.+..+....... . ...+++.|...-.+++ | +||.++...|+..- . .++
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~-~----~~~ll~~l~~~l~~~~------~-~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYAST-S----LEAQQESIVESLSNKN------P-SVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTS-C----HHHHHHHHHHHTTCSC------H-HHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcC-C----HHHHHHHHHHHHcCCC------h-HHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 567888888887774211111 1 2456777777655443 3 67899988877631 1 122
Q ss_pred ccccCCcccchHHHHHhccChHHHHHHHHHH
Q 000205 770 DKNILDFKQRSFEILISETNPVVLRAMEGFQ 800 (1860)
Q Consensus 770 pe~iPd~~gs~y~qLLsetn~sVL~A~eeLL 800 (1860)
+..+| ...+++...+++|+.+..+-+
T Consensus 175 ~~l~p-----~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 175 KLLTT-----SLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHH-----HHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHhcCCChHHHHHHHHHH
Confidence 22223 345566777888777765543
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=89.94 E-value=5.4 Score=48.40 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=147.3
Q ss_pred HHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHH
Q 000205 533 LLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTW 602 (1860)
Q Consensus 533 Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLW 602 (1860)
.+|.|...+ .+ ..+|.++..-..+|-.++.+. -++|..++.+. ..++..+..|+..|..+-
T Consensus 120 ~ip~Lv~lL--~~--~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~-----s~~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 120 LIPKFVSFL--GK--TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-----SPHAHISEQAVWALGNIA 190 (529)
T ss_dssp HHHHHHHHH--TC--TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH--cC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHh
Confidence 456666666 33 447888888888888888765 24565555443 367778888988888887
Q ss_pred hhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC-c----chhhHHHHHHhhccCchhHH
Q 000205 603 EIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD-R----GVDLILSVAACIESRDPIIQ 668 (1860)
Q Consensus 603 kkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd-h----G~DLL~~IS~Clks~~~~v~ 668 (1860)
..++ .+.|.|-.+|...+. .....+.....+.++..+|+..+. . -...++.+..++.++++.+.
T Consensus 191 ~~~~~~r~~i~~~g~i~~Ll~lL~~~~~--~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 268 (529)
T 3tpo_A 191 GAGSAFRDLVIKHGAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 268 (529)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHTTCSSCG--GGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccCHHHHHHHHHcCCcHHHHHHHhccch--hHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHH
Confidence 5433 356667766664321 112233444566788889987643 2 24577888899999999999
Q ss_pred HHhHHHHHHhhhccc--cc---hHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHh--HHHHHHHHHHHHHhccc
Q 000205 669 ALGLQSLAYLCEADV--ID---FYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAY--SEASRTVLKILWDTGTT 741 (1860)
Q Consensus 669 ALALdALssLCeaDV--VD---f~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeY--ee~~~~VI~~LW~~T~s 741 (1860)
.-|..+|.+|+.+.- .. -...-..|-.-+. ..++.+....++.++......+++ .-....++..|..+-.+
T Consensus 269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence 999999999997541 11 1122333444444 346777777777776544333322 22344567777777654
Q ss_pred cCCCchhhHHHHHHHHHHHhhcCc---ccccccccCCcccchHHHHHhccChHHHHHHHHHHHHHH
Q 000205 742 THLGHELQWAKARASAFEALTQYE---VSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQVKII 804 (1860)
Q Consensus 742 ~d~n~D~~~~rVrsAAy~ALs~F~---Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLLtslI 804 (1860)
.++ .|+..|..+|++.. -.+....+...-=.....++...+.++...+...+..+.
T Consensus 347 ~~~-------~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 347 PKT-------NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp SSH-------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred CCH-------HHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 332 45777777776543 111111000000002345556666666555554444444
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.72 E-value=50 Score=41.40 Aligned_cols=220 Identities=6% Similarity=0.010 Sum_probs=129.1
Q ss_pred hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccC---c----ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHh
Q 000205 531 PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQ---S----VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWE 603 (1860)
Q Consensus 531 p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~h---k----~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWk 603 (1860)
+.+++.++..+ .. .+.++.++...+++|-.+... . ...+.+++.+...+. +.++..|..+++++.++-+
T Consensus 178 ~~ll~~l~~~l--~~-~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 178 NNILIAIVQGA--QS-TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHHHHH--ST-TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--cC-CCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 45555555554 22 122677888888877654211 0 012445666654442 5678889999999999998
Q ss_pred hcccch-hhHH-hhhcCcCCCCccchhhHHHHHHHHHHHHhhcC-----------------CCc----chhhHHHHHHhh
Q 000205 604 INDRAF-GSLQ-GVLQPKLLIDFKSERNICISIAASIHDVCRKD-----------------PDR----GVDLILSVAACI 660 (1860)
Q Consensus 604 kqdRaf-P~LQ-~lL~~s~~~~~~~ewEv~IArAasIRDICk~r-----------------Pdh----G~DLL~~IS~Cl 660 (1860)
..+..+ |++. .++..-...-.+.+.++.......+..+|+.. |.. -.++++.+-.++
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 876544 4444 33221000011234567777777777887763 111 134555554444
Q ss_pred cc-------CchhHHHHhHHHHHHhhhc---cccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCC--hHHhHHHH
Q 000205 661 ES-------RDPIIQALGLQSLAYLCEA---DVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMD--AEAYSEAS 728 (1860)
Q Consensus 661 ks-------~~~~v~ALALdALssLCea---DVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavd--aeeYee~~ 728 (1860)
.. ++..+.-.|.+++..|++. ++++ ..-..+...+. +.++.+.++.+..++..... .+.+....
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l 409 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE--PVLEFVEQNIT--ADNWRNREAAVMAFGSIMDGPDKVQRTYYV 409 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--HHHHHHHHHcC--CCChhHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 2345555677777777653 3332 33355555555 34688888888888765533 35566667
Q ss_pred HHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 729 RTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 729 ~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.+++..|-+...+.+ ..||.+|..+|++|.
T Consensus 410 ~~il~~l~~~l~d~~-------~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 410 HQALPSILNLMNDQS-------LQVKETTAWCIGRIA 439 (861)
T ss_dssp HHHHHHHHHGGGCSC-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCc-------HHHHHHHHHHHHHHH
Confidence 788888877654332 267888988998876
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.95 E-value=4.1 Score=44.07 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=108.5
Q ss_pred CCCCchhHHHHHHHHHHHhhcc--------cchhhHHhhhc-CcCCCCccchhhHHHHHHHHHHHHhhcC-C---Ccchh
Q 000205 585 NAKPVLYATATRLLCQTWEIND--------RAFGSLQGVLQ-PKLLIDFKSERNICISIAASIHDVCRKD-P---DRGVD 651 (1860)
Q Consensus 585 ~s~~~LrA~ALRLLtkLWkkqd--------RafP~LQ~lL~-~s~~~~~~~ewEv~IArAasIRDICk~r-P---dhG~D 651 (1860)
+.+.+.|--|+..+.++-+..+ ++.+.|.+.+. +. +-++..+.+.++..+|+.= + .+-..
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-------~~~V~~~a~~~l~~la~~l~~~~~~~~~~ 98 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-------NVVLVAMAGKCLALLAKGLAKRFSNYASA 98 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3556666777777777766522 33444444442 32 3445566777777777532 2 15677
Q ss_pred hHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcc-cC-CChH-HhHHHH
Q 000205 652 LILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRW-GA-MDAE-AYSEAS 728 (1860)
Q Consensus 652 LL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~-ga-vdae-eYee~~ 728 (1860)
+++.|-.++++.++.+...|.++|..++++- .+-.....|...+.+ .+|.+....+.+++. .. .+.+ ......
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--~~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYAST--SLEAQQESIVESLSN--KNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 8888889999889999999999999999864 444556667676664 489999999999964 22 2222 234445
Q ss_pred HHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 729 RTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 729 ~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
..++..|...-.+++ + +||.+|+++|+.+-
T Consensus 175 ~~l~p~l~~~l~D~~------~-~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPD------P-TVRDSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHHHTSSC------H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC------h-HHHHHHHHHHHHHH
Confidence 677777777654332 2 78999999999865
No 38
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.02 E-value=5.5 Score=49.98 Aligned_cols=164 Identities=10% Similarity=0.099 Sum_probs=99.9
Q ss_pred CCchhHHHHHHHHHHHhhc-----ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCC-C----cchhhHHHH
Q 000205 587 KPVLYATATRLLCQTWEIN-----DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDP-D----RGVDLILSV 656 (1860)
Q Consensus 587 ~~~LrA~ALRLLtkLWkkq-----dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rP-d----hG~DLL~~I 656 (1860)
....|..|.+++..+-..- +.+.|.+...+.+ ..|.++.+...++..++...+ + +-.++++.+
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~-------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l 413 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC-------CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566777777776665442 2334444444332 368888888889988887554 2 345677777
Q ss_pred HHhhccCchhHHHHhHHHHHHhhhccc------cchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCC-----------
Q 000205 657 AACIESRDPIIQALGLQSLAYLCEADV------IDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAM----------- 719 (1860)
Q Consensus 657 S~Clks~~~~v~ALALdALssLCeaDV------VDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gav----------- 719 (1860)
-.++++.++.+...|..++..+|+.-- --+-.....+-..+.+ .|.|....|..+.....
T Consensus 414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 414 IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 788888889998899999999988621 2344556666666655 37777776666632111
Q ss_pred ----ChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 720 ----DAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 720 ----daeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
..+.......+++..|.......+. +++ .+|..|+++|+..
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~~---~~r~~~~~~l~~l 535 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDG-HQN---NLRSSAYESLMEI 535 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CST---THHHHHHHHHHHH
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCc-chh---hHHHHHHHHHHHH
Confidence 1111222345677777765443221 111 3477888887654
No 39
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=87.81 E-value=19 Score=42.49 Aligned_cols=179 Identities=11% Similarity=0.038 Sum_probs=108.7
Q ss_pred CcchHHHHHhhhhhhccCc----------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh--------cccchhh
Q 000205 550 CQNKLPKLLGMLPSIASQS----------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI--------NDRAFGS 611 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk----------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk--------qdRafP~ 611 (1860)
++..+..-..+|-.++.+. ..+|.+++.+. .+.++..+..|.+.+.++=.. +..+.|.
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~----~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~ 105 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ----NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPA 105 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHh----cCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHH
Confidence 6677777777776666543 24555555543 234667788888888876432 2356677
Q ss_pred HHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhcc----
Q 000205 612 LQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVDLILSVAACIESRDPIIQALGLQSLAYLCEAD---- 682 (1860)
Q Consensus 612 LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~DLL~~IS~Clks~~~~v~ALALdALssLCeaD---- 682 (1860)
|-++|... ..++....+.+++.+|..++++ ....++.+-+.++++++.+.+.+..+|..|+..+
T Consensus 106 L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 106 LVKMLGSP-------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HHHHTTCS-------CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCC-------CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 77776542 3567788899999999988763 2456777778888888888899999998888632
Q ss_pred --ccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHH-HHHHHHHHHHhccc
Q 000205 683 --VIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEA-SRTVLKILWDTGTT 741 (1860)
Q Consensus 683 --VVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~-~~~VI~~LW~~T~s 741 (1860)
+++- .+-..+-.-+++ ++.+.+..+.+..+.....+.+--+.. ...++..|=++..+
T Consensus 179 ~~i~~~-~~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~ 238 (529)
T 1jdh_A 179 LIILAS-GGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238 (529)
T ss_dssp HHHHHT-THHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS
T ss_pred HHHHHC-CCHHHHHHHHHh-CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC
Confidence 1111 122233333444 445555666666664444332211111 23566666665543
No 40
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=87.46 E-value=91 Score=41.61 Aligned_cols=104 Identities=16% Similarity=0.064 Sum_probs=70.7
Q ss_pred hhhhcC-CCCchhhHHHHHHHHHhhhcCCCCCCCCCchhHHHHHhhhcCCChhhHHHHHHHHHHHhhc-CccchhhhHHH
Q 000205 7 LLEKAR-VPQPSLQKFAVVSIFSKLRTSPAHLGPDSEPGRDAITQCLNSSSPAVVDQTVREFCRLVAD-SKFDLSLGLLE 84 (1860)
Q Consensus 7 l~~~t~-vp~p~lq~~av~s~f~~l~~~p~~~~~~~~~~~eal~~~l~S~~~~v~~~av~~L~rLv~~-g~ld~~~~L~~ 84 (1860)
|++-.. .++|..+..|+..+..-+...|+.+.|.-+.--+.+..++.++++.|=..|++.|..++.. +.-.++..+..
T Consensus 138 L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~ 217 (1230)
T 1u6g_C 138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217 (1230)
T ss_dssp HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHH
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444444 5778888888777776666678888766666677888899999999999999999999875 21124556777
Q ss_pred HHhhhcCC-CchhHHHHHHHHHHHHHh
Q 000205 85 LQSALEGS-DPKFVTLFVKALGYLVRL 110 (1860)
Q Consensus 85 L~s~L~~s-s~r~~~~lvkaI~~Ll~l 110 (1860)
|+..|... ++......+++++.+...
T Consensus 218 l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 218 LLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp HHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 77777443 223333456777776543
No 41
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=87.39 E-value=4 Score=51.27 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=99.2
Q ss_pred cccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhc--ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcC
Q 000205 568 SVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEIN--DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKD 645 (1860)
Q Consensus 568 k~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq--dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~r 645 (1860)
..-+-+++.+++.=++ ++++..|+.|+|.++.+-..+ +-..|.+.+.|.. .+....++=..|.|+..+++.+
T Consensus 106 ~e~~~L~iN~l~kDl~-~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~-----~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 106 SELIRLINNAIKNDLA-SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVA-----GDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHC-----SSSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHhC
Confidence 3445566666664443 578899999999999984322 2234444444411 1234566777888999999999
Q ss_pred CCcch--hhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHH----HHHHHHHhhcC--C--C-------CCHHHHH
Q 000205 646 PDRGV--DLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYT----AWDVIAKHMLD--Y--S-------LDPMLAQ 708 (1860)
Q Consensus 646 PdhG~--DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~S----AWkVLa~KL~~--~--~-------~rPlVlk 708 (1860)
|+.-. +++..+.+++++.++.++..|+-++.++|+.+--.|.. ..+.|.+-+.. + + .+|....
T Consensus 180 p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi 259 (621)
T 2vgl_A 180 PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV 259 (621)
T ss_dssp GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence 98434 89999999999999999999999999999987432211 22333322221 1 1 1699999
Q ss_pred HHHHHhcccCC
Q 000205 709 SLCILLRWGAM 719 (1860)
Q Consensus 709 SLCeLfp~gav 719 (1860)
.+.+++.....
T Consensus 260 ~il~ll~~~~~ 270 (621)
T 2vgl_A 260 KLLRLLQCYPP 270 (621)
T ss_dssp HHHHHGGGSSS
T ss_pred HHHHHHHHhCC
Confidence 99999976553
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=87.34 E-value=8.3 Score=46.70 Aligned_cols=267 Identities=10% Similarity=0.063 Sum_probs=152.6
Q ss_pred cchHHHHHHHHHccCCCCC--c--hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc----------cHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKLG--V--PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV----------MIPLVVQ 576 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qa--v--p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~----------~iP~VLr 576 (1860)
+..|+.+|+-++..++.+. + .-.+|.|...+ . ..++.++..-+.+|-.++.+.. .+|++++
T Consensus 118 q~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL--~---s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~ 192 (510)
T 3ul1_B 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--A---SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192 (510)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT--T---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH--c---CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH
Confidence 4668888888876555431 0 11355555555 2 2377888888999988887642 3444444
Q ss_pred HHHHhhhcCCCCc----hhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhh
Q 000205 577 TILPMLHKNAKPV----LYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCR 643 (1860)
Q Consensus 577 tL~pmLsk~s~~~----LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk 643 (1860)
.+. ...... ....+...+..+-+.. ..+.|.|.++|... ..|+....+.++..+|.
T Consensus 193 lL~----~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~A~~aL~~L~~ 261 (510)
T 3ul1_B 193 LLA----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTD 261 (510)
T ss_dssp HTC----SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTS
T ss_pred HHH----hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhh
Confidence 443 111111 2223444444444322 23556666666542 45677778889999987
Q ss_pred cCCCcc-----hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHH--------HHhhcCCCCCHHHHHHH
Q 000205 644 KDPDRG-----VDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVI--------AKHMLDYSLDPMLAQSL 710 (1860)
Q Consensus 644 ~rPdhG-----~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVL--------a~KL~~~~~rPlVlkSL 710 (1860)
..+++. ...++.+-+++++.++.+..-++.+|..++..+- ..+-.++ .+-+ . ..++.+.+.-
T Consensus 262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL-~-~~~~~v~~~A 336 (510)
T 3ul1_B 262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLL-T-NPKTNIQKEA 336 (510)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-CT-T-CSSHHHHHHH
T ss_pred chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH---HHHHHHhhccchHHHHHHh-c-CCCHHHHHHH
Confidence 766522 2356666788888899999999999999876431 1111222 1222 2 4578888888
Q ss_pred HHHhcccCCChHHhHHH--HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCc----ccchHHHH
Q 000205 711 CILLRWGAMDAEAYSEA--SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDF----KQRSFEIL 784 (1860)
Q Consensus 711 CeLfp~gavdaeeYee~--~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~----~gs~y~qL 784 (1860)
|..+...+....++.+. ...++..|=+.-.+.+. +|+.+|-.||+++....-++.+..+ -=.....|
T Consensus 337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~-------~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~L 409 (510)
T 3ul1_B 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-------KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHG
T ss_pred HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCH-------HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 88887776655544433 23455555554443332 5688888888876532212111000 00124556
Q ss_pred HhccChHHHHHHHHHHHHHHH
Q 000205 785 ISETNPVVLRAMEGFQVKIIT 805 (1860)
Q Consensus 785 Lsetn~sVL~A~eeLLtslIk 805 (1860)
+...++++....-+.+..+++
T Consensus 410 L~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 410 LSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp GGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 666677665555555545544
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.06 E-value=11 Score=48.56 Aligned_cols=229 Identities=14% Similarity=0.044 Sum_probs=133.8
Q ss_pred chHHHHHHHHHccCCCC-CchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHHHHHHHH
Q 000205 512 SSAVDAFATVGKMDPKL-GVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLVVQTILP 580 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~q-avp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~VLrtL~p 580 (1860)
+.++.++..++...+.+ +...+++.|.-.+ + ..++.++.....+|-.|+.+. -.+|.+++.+..
T Consensus 378 ~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL---~--~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLL---G--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT---T--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhhhHHHHHHHHH---c--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 56777787777655443 3456677766665 2 247888888888898888764 356777776652
Q ss_pred hhhcCCCCchhHHHHHHHHHHHhhc------------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc
Q 000205 581 MLHKNAKPVLYATATRLLCQTWEIN------------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR 648 (1860)
Q Consensus 581 mLsk~s~~~LrA~ALRLLtkLWkkq------------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh 648 (1860)
- +.....+..|++.+..+...+ ..+.|.|-++|... ..+++..+.+.++..+|...+.+
T Consensus 453 ~---~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~------~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 453 A---GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP------SHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp H---TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT------CCHHHHHHHHHHHHHHHSSHHHH
T ss_pred c---CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC------ChHHHHHHHHHHHHHHhcCHHHH
Confidence 1 123377888999998886532 34567777777643 34678888889999998643322
Q ss_pred ----chhhHHHHHHhhccC----------------------chhHHHHhHHHHHHhhhccc----cchHHHHHHHHHhhc
Q 000205 649 ----GVDLILSVAACIESR----------------------DPIIQALGLQSLAYLCEADV----IDFYTAWDVIAKHML 698 (1860)
Q Consensus 649 ----G~DLL~~IS~Clks~----------------------~~~v~ALALdALssLCeaDV----VDf~SAWkVLa~KL~ 698 (1860)
-..+|+.+-+.+++. .+.+...+..+|..||...- +-=..+...|-+-+.
T Consensus 524 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~ 603 (780)
T 2z6g_A 524 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY 603 (780)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG
T ss_pred HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc
Confidence 122344443332221 13345567778888774210 000112233444444
Q ss_pred CCCCCHHHHHHHHHHhcccCCChHHhHHHHHH--HHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 699 DYSLDPMLAQSLCILLRWGAMDAEAYSEASRT--VLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 699 ~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~--VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
+.++.|.+.-+..+.....+ +++.+...+ .++.|.+...+++ + .||..|-.||.+.
T Consensus 604 --~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~----~---~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 604 --SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRN----E---GVATYAAAVLFRM 661 (780)
T ss_dssp --CSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSC----H---HHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCC----H---HHHHHHHHHHHHH
Confidence 34677776666555433333 344444444 6888888865443 3 3466666666543
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=86.43 E-value=37 Score=42.08 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=107.2
Q ss_pred CCcchHHHHHhhhhhhccCcc----------cHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh--------cccchh
Q 000205 549 VCQNKLPKLLGMLPSIASQSV----------MIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI--------NDRAFG 610 (1860)
Q Consensus 549 ~~p~l~l~LL~tLPsLA~hk~----------~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk--------qdRafP 610 (1860)
.++.++..-+.+|-.++.+.. .+|.+++. |..+.++..+.-|.+.+..+-+. +..+.|
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~----L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~ 101 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT----MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHH----HHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHH----HhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHH
Confidence 367788888888877777653 24444444 43234566777777777765432 334666
Q ss_pred hHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chhhHHHHHHhhccCchhHHHHhHHHHHHhhhcc---
Q 000205 611 SLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVDLILSVAACIESRDPIIQALGLQSLAYLCEAD--- 682 (1860)
Q Consensus 611 ~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~DLL~~IS~Clks~~~~v~ALALdALssLCeaD--- 682 (1860)
.|-++|... ..++....+.+++.+|...+++ ....|+.+-+++++.++...+.+.++|..|+...
T Consensus 102 ~Lv~lL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 102 ALVKMLGSP-------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HHHHHTTCS-------SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhCC-------CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 677666542 3678888999999999987652 2456777778888888889999999999998632
Q ss_pred ---ccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHH-HHHHHHHHHHhcc
Q 000205 683 ---VIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEA-SRTVLKILWDTGT 740 (1860)
Q Consensus 683 ---VVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~-~~~VI~~LW~~T~ 740 (1860)
+++ ..+-..|-.-+++ ...+.+....+..+.....+.+--+.. ...++..|=.+..
T Consensus 175 ~~~i~~-~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 175 KLIILA-SGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp HHHHHH-TTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHH-cCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh
Confidence 111 1222334444444 344555555555554333332211111 2234555555543
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.26 E-value=8.6 Score=46.65 Aligned_cols=270 Identities=10% Similarity=0.052 Sum_probs=150.2
Q ss_pred cchHHHHHHHHHccCCCCC--c--hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc----------cHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKLG--V--PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV----------MIPLVVQ 576 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~qa--v--p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~----------~iP~VLr 576 (1860)
+..|+.+|..++..++.+. + .-.+|.|...+ + ..++.++.....+|-.++.+.. .+|++++
T Consensus 137 q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL---~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~ 211 (529)
T 3tpo_A 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL---A--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT---T--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---c--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH
Confidence 4668888888887665441 0 11355555544 2 2367888888899988887642 3444444
Q ss_pred HHHHhhhcCCCCc----hhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhh
Q 000205 577 TILPMLHKNAKPV----LYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCR 643 (1860)
Q Consensus 577 tL~pmLsk~s~~~----LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk 643 (1860)
.+. ...... +...+...+..+-+.. ..+.|.|.++|... ..|+....+.++..+|.
T Consensus 212 lL~----~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 212 LLA----VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTD 280 (529)
T ss_dssp TTC----SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHS
T ss_pred HHh----ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-------cHHHHHHHHHHHHHhhh
Confidence 332 111111 1222333343333221 33566677666542 34677778888999987
Q ss_pred cCCCcc-----hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccc-----hHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 000205 644 KDPDRG-----VDLILSVAACIESRDPIIQALGLQSLAYLCEADVID-----FYTAWDVIAKHMLDYSLDPMLAQSLCIL 713 (1860)
Q Consensus 644 ~rPdhG-----~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVD-----f~SAWkVLa~KL~~~~~rPlVlkSLCeL 713 (1860)
..+++. ...++.+-+++++.++.+..-++.+|..++..+--. -..+...|.+-+. ..++.+.+..|..
T Consensus 281 ~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~a 358 (529)
T 3tpo_A 281 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWT 358 (529)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHH
T ss_pred hhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHH
Confidence 666532 235566668888889999999999999987543100 0112223333343 4578888888888
Q ss_pred hcccCCChHHhHHH--HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcccccccccCCc---c-cchHHHHHhc
Q 000205 714 LRWGAMDAEAYSEA--SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEVSHIDKNILDF---K-QRSFEILISE 787 (1860)
Q Consensus 714 fp~gavdaeeYee~--~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~---~-gs~y~qLLse 787 (1860)
+...+....++-.. ...++..|=+.-.+.+. +|+.+|-.||+++....=++.+..+ . =.....|+..
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~-------~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-------KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCH-------HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCH-------HHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 87666554443332 22355555554443321 5677888888877532212211000 0 0124566777
Q ss_pred cChHHHHHHHHHHHHHHH
Q 000205 788 TNPVVLRAMEGFQVKIIT 805 (1860)
Q Consensus 788 tn~sVL~A~eeLLtslIk 805 (1860)
.++++....-+-+..+++
T Consensus 432 ~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 777655554444444443
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=84.18 E-value=11 Score=44.51 Aligned_cols=229 Identities=12% Similarity=0.056 Sum_probs=132.1
Q ss_pred cchHHHHHHHHHccCCCC----CchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc---------cHHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKL----GVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV---------MIPLVVQT 577 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~q----avp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~---------~iP~VLrt 577 (1860)
+..++..+..++..++.. ..+..++.+...+ .+ ..++..+..-..+|-.++.+.. .+|.+++
T Consensus 34 ~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L--~~--~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~- 108 (529)
T 1jdh_A 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM--QN--TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK- 108 (529)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHH--HH--CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHH--hc--CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHH-
Confidence 467888888887654321 0123455555555 22 2377888888888888877653 3444443
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc
Q 000205 578 ILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR 648 (1860)
Q Consensus 578 L~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh 648 (1860)
+|. ..++..+..|++.+..+-..+ ..+.|.|-++|... .+++....+.+++.+|..+|+.
T Consensus 109 ---lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-------~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 109 ---MLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-------NVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp ---HTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHc-CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHHHHhCCHHH
Confidence 443 356778889999999887763 34667777777642 3556666667888888866542
Q ss_pred ch-----hhHHHHHHhhcc-CchhHHHHhHHHHHHhhhcccc-ch---HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccC
Q 000205 649 GV-----DLILSVAACIES-RDPIIQALGLQSLAYLCEADVI-DF---YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGA 718 (1860)
Q Consensus 649 G~-----DLL~~IS~Clks-~~~~v~ALALdALssLCeaDVV-Df---~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~ga 718 (1860)
.. +.++.+-+.+++ +.......+..+|..||..+-. +. ..+...|-+-+.+ + ++.+.+..+..+....
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~-~-~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-P-SQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC-C-ChHHHHHHHHHHHHHh
Confidence 11 234444443433 3455666677778888754321 00 1344555555554 3 6777766666664322
Q ss_pred CChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCc
Q 000205 719 MDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 719 vdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.+.... +....++..|-++-.+++ + .|+..|..+|++..
T Consensus 256 ~~~~~~-~~~~~~i~~L~~ll~~~~----~---~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 256 DAATKQ-EGMEGLLGTLVQLLGSDD----I---NVVTCAAGILSNLT 294 (529)
T ss_dssp TTCTTC-SCCHHHHHHHHHHTTCSC----H---HHHHHHHHHHHHHT
T ss_pred cCChhh-HHHHhHHHHHHHHHcCCC----H---HHHHHHHHHHHHHh
Confidence 211111 112356777777654332 2 45777777777653
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=83.19 E-value=24 Score=43.69 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHccCCCC----CchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCcc---------cHHHHHHH
Q 000205 511 GSSAVDAFATVGKMDPKL----GVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQSV---------MIPLVVQT 577 (1860)
Q Consensus 511 ~~~al~~L~~L~k~dP~q----avp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk~---------~iP~VLrt 577 (1860)
+..++.+|..++..++.. ..+..++.+...+ .. ..++..+..-..+|-.|+.+.. .+|.+++
T Consensus 31 r~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L--~~--~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~- 105 (644)
T 2z6h_A 31 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM--QN--TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK- 105 (644)
T ss_dssp HHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHH--HS--CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHH-
T ss_pred HHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHH--hc--CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHH-
Confidence 477888888888765421 0123455556655 22 2367888888888888776643 3444444
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCC
Q 000205 578 ILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDP 646 (1860)
Q Consensus 578 L~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rP 646 (1860)
+|. ..++..+..|++.+..+-..+ ..+.|.|-++|...+ .+...+.+.++..+|..++
T Consensus 106 ---lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 106 ---MLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------VKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp ---HTT-CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-------HHHHHHHHHHHHHHHTTCH
T ss_pred ---HHh-CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-------HHHHHHHHHHHHHHHhcCc
Confidence 443 356778889999999987663 456677777776531 2333333446666665443
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=79.26 E-value=33 Score=44.08 Aligned_cols=120 Identities=12% Similarity=0.104 Sum_probs=86.6
Q ss_pred CcchHHHHHhhhhhhccCc----------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh--------cccchhh
Q 000205 550 CQNKLPKLLGMLPSIASQS----------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI--------NDRAFGS 611 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk----------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk--------qdRafP~ 611 (1860)
++.++..-+.+|-.++.+. .++|.+++.+. .+.++..+.-|.+.+..+=.. +..+.|.
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~----~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~ 238 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ----NTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPA 238 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHc----CCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHH
Confidence 6778888888888777653 45666666654 234677788888888875332 2356777
Q ss_pred HHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chhhHHHHHHhhccCchhHHHHhHHHHHHhhh
Q 000205 612 LQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVDLILSVAACIESRDPIIQALGLQSLAYLCE 680 (1860)
Q Consensus 612 LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~DLL~~IS~Clks~~~~v~ALALdALssLCe 680 (1860)
|-++|... ..++....+.++..+|...++. ....|+.+-+.+++++..+...++++|..||.
T Consensus 239 Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 239 LVNMLGSP-------VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHTTCS-------CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-------CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 77777642 3678888999999999988762 23456677788888888888899999998885
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=75.36 E-value=8.9 Score=42.68 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=101.0
Q ss_pred chhhHHHHHHHHHHH-HhhcCCC------cchhhHHHHHHhh-ccCchhHHHHhHHHHHHhhhccc-cchH-HHH----H
Q 000205 626 SERNICISIAASIHD-VCRKDPD------RGVDLILSVAACI-ESRDPIIQALGLQSLAYLCEADV-IDFY-TAW----D 691 (1860)
Q Consensus 626 ~ewEv~IArAasIRD-ICk~rPd------hG~DLL~~IS~Cl-ks~~~~v~ALALdALssLCeaDV-VDf~-SAW----k 691 (1860)
..|..+-+...++.. +++..|+ +-.+++..+..++ ++.|..+...|+++|..|++.=- =+|- .-- -
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp 107 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFT 107 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 478888888888888 8866443 1147788888888 78899999999999999996322 1332 111 2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhccc--CCChH-HhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcCcc--
Q 000205 692 VIAKHMLDYSLDPMLAQSLCILLRWG--AMDAE-AYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQYEV-- 766 (1860)
Q Consensus 692 VLa~KL~~~~~rPlVlkSLCeLfp~g--avdae-eYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F~I-- 766 (1860)
.|=.++. +..+.|..+...-+-.. .++.. .|. ....+++.|-..-.+++ | .|+.+|...|+.+--
T Consensus 108 ~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~-~l~~ll~~l~~~l~~k~------~-~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 108 PLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSG-RNEDMLKDILEHMKHKT------P-QIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTC-TTHHHHHHHHHHTTCSS------H-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCC-cHHHHHHHHHHHHcCCC------h-HHHHHHHHHHHHHHHHc
Confidence 2233333 45677766655544110 12111 110 13346667777655543 4 789999988887651
Q ss_pred --------ccc-ccccCCcccchHHHHHhccChHHHHHHHHHHHHHH
Q 000205 767 --------SHI-DKNILDFKQRSFEILISETNPVVLRAMEGFQVKII 804 (1860)
Q Consensus 767 --------e~L-pe~iPd~~gs~y~qLLsetn~sVL~A~eeLLtslI 804 (1860)
.++ |+.+| .-.+++..++++|+.+..+-+..+.
T Consensus 178 ~~~~~~l~~~l~~~iip-----~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVP-----IVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CSCSHHHHHHHTTTHHH-----HHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHH-----HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 123 33333 4466778888999998777665543
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.18 E-value=10 Score=43.62 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=81.5
Q ss_pred CCCchhHHHHHHHHHHHhhcc---------cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chh
Q 000205 586 AKPVLYATATRLLCQTWEIND---------RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVD 651 (1860)
Q Consensus 586 s~~~LrA~ALRLLtkLWkkqd---------RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~D 651 (1860)
+++.++.-|.+.+..++..++ -+.|.|-++|..+ ...++....+.++-.+|+.+|+. ...
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g 167 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD------ACDTVRVKALFAISCLVREQEAGLLQFLRLD 167 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC------CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC
Confidence 455566666666666666554 3566777766532 12456667778899999887741 234
Q ss_pred hHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHH
Q 000205 652 LILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTV 731 (1860)
Q Consensus 652 LL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~V 731 (1860)
.++.+-.++++.++.++.-|.-+|++||..+. -....++. .-++..++.|+... .++....+
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~---~~~~~vv~---------~g~i~~Lv~LL~~~------d~~v~~~a 229 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP---EHKGTLCS---------MGMVQQLVALVRTE------HSPFHEHV 229 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHH---------TTHHHHHHHHHTSC------CSTHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh---HHHHHHHH---------cCCHHHHHHHHcCC------ChhHHHHH
Confidence 57777788888899999999999999998631 11111111 11445666666532 22445556
Q ss_pred HHHHHHhcc
Q 000205 732 LKILWDTGT 740 (1860)
Q Consensus 732 I~~LW~~T~ 740 (1860)
+..|+++.+
T Consensus 230 l~aL~~l~~ 238 (296)
T 1xqr_A 230 LGALCSLVT 238 (296)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666666654
No 51
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=67.76 E-value=41 Score=38.66 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHHhhcc--------cchhhHHh-hhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCc-----chhhHH
Q 000205 589 VLYATATRLLCQTWEIND--------RAFGSLQG-VLQPKLLIDFKSERNICISIAASIHDVCRKDPDR-----GVDLIL 654 (1860)
Q Consensus 589 ~LrA~ALRLLtkLWkkqd--------RafP~LQ~-lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdh-----G~DLL~ 654 (1860)
..+..|+..+..+-+..| -..|.|-. +|... ..++....|.++..++..+|+. ....|+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~ 127 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 127 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 356677777777765322 34566666 55432 3567778888999999988852 234566
Q ss_pred HHHHhhccC-chhHHHHhHHHHHHhhhccc--c-ch--HHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHH-
Q 000205 655 SVAACIESR-DPIIQALGLQSLAYLCEADV--I-DF--YTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEA- 727 (1860)
Q Consensus 655 ~IS~Clks~-~~~v~ALALdALssLCeaDV--V-Df--~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~- 727 (1860)
++=.+++++ ++.+..-|+-||+.||.+.- . .| ......|.+-+.. .++.+.+..|..+...+....++-+.
T Consensus 128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~--~d~~v~~~A~~aLs~L~~~~~~~~~~v 205 (296)
T 1xqr_A 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ--QVQKLKVKSAFLLQNLLVGHPEHKGTL 205 (296)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 666777753 68899999999999997531 1 12 3467777777775 48999999999986554333333332
Q ss_pred -HHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 728 -SRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 728 -~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
...++..|=..-.++++ +|+..|..+|++.
T Consensus 206 v~~g~i~~Lv~LL~~~d~-------~v~~~al~aL~~l 236 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHS-------PFHEHVLGALCSL 236 (296)
T ss_dssp HHTTHHHHHHHHHTSCCS-------THHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCh-------hHHHHHHHHHHHH
Confidence 33577777776554443 3466666666543
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=65.90 E-value=86 Score=34.79 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=89.7
Q ss_pred cchHHHHHHH-HHccCCCCC-----chhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhcc----CcccHHHHHHHHHH
Q 000205 511 GSSAVDAFAT-VGKMDPKLG-----VPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIAS----QSVMIPLVVQTILP 580 (1860)
Q Consensus 511 ~~~al~~L~~-L~k~dP~qa-----vp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~----hk~~iP~VLrtL~p 580 (1860)
++.+++.+.. +....|... ...++-.+.-.+ ++ ..|+.+...-+++|-.|+. ..+.-|..-.++.+
T Consensus 33 Rk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l--~~--D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ 108 (249)
T 2qk1_A 33 RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHII--QK--DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP 108 (249)
T ss_dssp HHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHH--HH--CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHh--cc--CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 3556777777 654433321 123333333333 33 3466555555555544432 33331223333332
Q ss_pred hhhc--CCCCchhHHHHHHHHHHHhhcccchhh--HHhhhcCc-CCCCccchhhHHHHHHHHHHHHhhcCCCc-------
Q 000205 581 MLHK--NAKPVLYATATRLLCQTWEINDRAFGS--LQGVLQPK-LLIDFKSERNICISIAASIHDVCRKDPDR------- 648 (1860)
Q Consensus 581 mLsk--~s~~~LrA~ALRLLtkLWkkqdRafP~--LQ~lL~~s-~~~~~~~ewEv~IArAasIRDICk~rPdh------- 648 (1860)
++.+ +.++..+.-+...+-.+-+.-+...++ |..++..- ..-.+ ..|.+..+...+|..++...+.+
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~ 187 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRY 187 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 3222 455556555555555555544212222 33333210 00011 25777778888888888777642
Q ss_pred -chhhHHHHHHhhccCchhHHHHhHHHHHHhhh
Q 000205 649 -GVDLILSVAACIESRDPIIQALGLQSLAYLCE 680 (1860)
Q Consensus 649 -G~DLL~~IS~Clks~~~~v~ALALdALssLCe 680 (1860)
-.++++.+.+|+.+.++.+...|.+++..+|+
T Consensus 188 l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 25788888999999999999999999999986
No 53
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=63.59 E-value=68 Score=42.12 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHc-cCCCCCc-----hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc----------ccHHHH
Q 000205 511 GSSAVDAFATVGK-MDPKLGV-----PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS----------VMIPLV 574 (1860)
Q Consensus 511 ~~~al~~L~~L~k-~dP~qav-----p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk----------~~iP~V 574 (1860)
++.|+.+|..++. .+|.+.. ...++.|...+ . ++.+......-+.+|-.|+.+. -.+|.+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL--~--~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L 628 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL--Q--QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI 628 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTT--S--TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHh--C--CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 4778888888765 3454311 12456666666 2 2223333456677888888774 245555
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhc---------ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcC
Q 000205 575 VQTILPMLHKNAKPVLYATATRLLCQTWEIN---------DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKD 645 (1860)
Q Consensus 575 LrtL~pmLsk~s~~~LrA~ALRLLtkLWkkq---------dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~r 645 (1860)
+..+. ..++..+.-|.++++.+-... ..+.|.|-.++.. .+.++..+.+.++..++...
T Consensus 629 v~LL~-----s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s-------~d~~vq~~Aa~ALanLt~~s 696 (810)
T 3now_A 629 EYYLM-----EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED-------EDEETATACAGALAIITSVS 696 (810)
T ss_dssp HHHHH-----SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC-------SSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHc-----CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC-------CCHHHHHHHHHHHHHHhCCC
Confidence 55554 367788999999999876432 2344444444443 23466677777888887755
Q ss_pred CCcc------hhhHHHHHHhhccCchhHHHHhHHHHHHhhhcc
Q 000205 646 PDRG------VDLILSVAACIESRDPIIQALGLQSLAYLCEAD 682 (1860)
Q Consensus 646 PdhG------~DLL~~IS~Clks~~~~v~ALALdALssLCeaD 682 (1860)
|+.. ...|+.+-+.+++.+..++--|..+|..|+.++
T Consensus 697 ~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 697 VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 5311 335556666677777777777788887777653
No 54
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.03 E-value=9.7 Score=50.62 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=58.4
Q ss_pred ccCccchhhHHHHHHhhhhhccCccchhhhhhHHHHHHhhhhccccccchhHHHHhhhhhccccccchhHHHHHHHHHHH
Q 000205 950 ESMPRSAENIALAIGALCSVLPQSAHTIKSTASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLE 1029 (1860)
Q Consensus 950 ~ssP~v~gNsiLAL~gLa~~v~~~~h~v~ssas~fLl~wL~q~eh~h~qwsAaisLGll~~slh~tD~k~k~~~Is~Ll~ 1029 (1860)
.+++.+..-+++|||-. --++++. .|++-|++-+...+|+.-++.+++|||++...= + +.+..+++
T Consensus 483 dd~~~~~~~AalALGli---~vGTgn~---~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~-~-------e~~~~li~ 548 (963)
T 4ady_A 483 NDSATSGEAAALGMGLC---MLGTGKP---EAIHDMFTYSQETQHGNITRGLAVGLALINYGR-Q-------ELADDLIT 548 (963)
T ss_dssp TCCHHHHHHHHHHHHHH---HTTCCCH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-G-------GGGHHHHH
T ss_pred cCCHHHHHHHHHHHhhh---hcccCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC-h-------HHHHHHHH
Confidence 34445555666666543 2255553 445556666666677777788899999985443 1 34556677
Q ss_pred HHhcccccceechhhhhhHHhhh
Q 000205 1030 VLSSSRSILVRGACGIGLGFSCQ 1052 (1860)
Q Consensus 1030 vls~s~S~~Vkgacgl~LG~~c~ 1052 (1860)
.|..+++-.|+-+..+++|++|.
T Consensus 549 ~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 549 KMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHHHhc
Confidence 77778888888888888887755
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=60.94 E-value=4.4 Score=40.00 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=60.0
Q ss_pred CcchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhh
Q 000205 550 CQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERN 629 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewE 629 (1860)
++.++..-+..|-.++... +|.+++ +|. +.++..|..|++.+.++ .++++.|.|.++|.+ ..++
T Consensus 25 ~~~vR~~A~~~L~~~~~~~--~~~L~~----~L~-d~~~~vR~~A~~aL~~~--~~~~a~~~L~~~L~d-------~~~~ 88 (131)
T 1te4_A 25 NKWVRRDVSTALSRMGDEA--FEPLLE----SLS-NEDWRIRGAAAWIIGNF--QDERAVEPLIKLLED-------DSGF 88 (131)
T ss_dssp CCCSSSSCCSSTTSCSSTT--HHHHHH----GGG-CSCHHHHHHHHHHHGGG--CSHHHHHHHHHHHHH-------CCTH
T ss_pred CHHHHHHHHHHHHHhCchH--HHHHHH----HHc-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHcC-------CCHH
Confidence 5566666666666555432 344333 333 45666777777776654 234566777766643 2355
Q ss_pred HHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHHhHHHHH
Q 000205 630 ICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQALGLQSLA 676 (1860)
Q Consensus 630 v~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~ALALdALs 676 (1860)
++.+.+.++..++ ..+.++.+.+.++++++.+...|.++|.
T Consensus 89 VR~~A~~aL~~~~------~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 89 VRSGAARSLEQIG------GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHC------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhC------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6666666666663 2345666666666666666666665553
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=59.55 E-value=28 Score=43.67 Aligned_cols=124 Identities=12% Similarity=0.102 Sum_probs=86.3
Q ss_pred CcchHHHHHhhhhhhccCcccHHHHHHHHHHhhh-cCCCCchhHHHHHHHHHHHhhccc------chhhHHhhhcCcCCC
Q 000205 550 CQNKLPKLLGMLPSIASQSVMIPLVVQTILPMLH-KNAKPVLYATATRLLCQTWEINDR------AFGSLQGVLQPKLLI 622 (1860)
Q Consensus 550 ~p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLs-k~s~~~LrA~ALRLLtkLWkkqdR------afP~LQ~lL~~s~~~ 622 (1860)
||..+-.-|.+|..+++ +..++.++..+...+. .+.+|-.|-.|.-.+.++.++++. .++.|+++|.+.+
T Consensus 124 n~~ir~lALr~L~~i~~-~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d-- 200 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS-REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH-- 200 (621)
T ss_dssp CHHHHHHHHHHHHHHCC-HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC--
T ss_pred CHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC--
Confidence 56666667888888765 3455556665555551 267889999999999999998764 5556777775432
Q ss_pred CccchhhHHHHHHHHHHHHhhcCCCcchhhHHHH----HHhhcc------C-------chhHHHHhHHHHHHhhhc
Q 000205 623 DFKSERNICISIAASIHDVCRKDPDRGVDLILSV----AACIES------R-------DPIIQALGLQSLAYLCEA 681 (1860)
Q Consensus 623 ~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~I----S~Clks------~-------~~~v~ALALdALssLCea 681 (1860)
--+..+...++.+||..+|+.-..+++.+ .+++.. + +|-.+...++.+..+|..
T Consensus 201 -----~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 201 -----LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp -----HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred -----ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence 24667777889999999997444445433 333321 1 688999999999998864
No 57
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=57.49 E-value=1.6e+02 Score=38.66 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=153.3
Q ss_pred chHHHHHHHHHccCCC---CCc-hhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhccCc-------------------
Q 000205 512 SSAVDAFATVGKMDPK---LGV-PLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIASQS------------------- 568 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~---qav-p~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~hk------------------- 568 (1860)
+.+++.|.-+....+. .+. ...+|.|+-.+ . ..++.+....+.+|-.+++..
T Consensus 397 ~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL--~---s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~ 471 (810)
T 3now_A 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLA--R---GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQH 471 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH--H---TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCS
T ss_pred HHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh--C---CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhcc
Confidence 5577777666543221 111 23455555444 1 135667777777777776643
Q ss_pred -----------------------ccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh--------cccchhhHHhhhc
Q 000205 569 -----------------------VMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEI--------NDRAFGSLQGVLQ 617 (1860)
Q Consensus 569 -----------------------~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkk--------qdRafP~LQ~lL~ 617 (1860)
-.+|..++.+. ..++..+.-|.+.+..+=.. +--+.|.|-.+|.
T Consensus 472 v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~-----s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~ 546 (810)
T 3now_A 472 IPEEHELDDVDFINKRITVLANEGITTALCALAK-----TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546 (810)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH
T ss_pred CccccccccHHHHHHHHHHHHHCcCHHHHHHHHc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 13555555543 35678888888888887432 1234555555554
Q ss_pred CcCCCCccchhhHHHHHHHHHHHHhhc-CCCc---c---hhhHHHHHHhhccC-chhHHHHhHHHHHHhhhcc------c
Q 000205 618 PKLLIDFKSERNICISIAASIHDVCRK-DPDR---G---VDLILSVAACIESR-DPIIQALGLQSLAYLCEAD------V 683 (1860)
Q Consensus 618 ~s~~~~~~~ewEv~IArAasIRDICk~-rPdh---G---~DLL~~IS~Clks~-~~~v~ALALdALssLCeaD------V 683 (1860)
.. ..+.....|.++..+|.. +|+. + .+.|+++-+.+.++ +.....-|+.||..|+... +
T Consensus 547 s~-------~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~I 619 (810)
T 3now_A 547 EG-------TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI 619 (810)
T ss_dssp SS-------CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cC-------CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 32 234566678888888874 4541 2 45777877777654 3344456788999998762 2
Q ss_pred cchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHH--HHHHHHHHHhccccCCCchhhHHHHHHHHHHHh
Q 000205 684 IDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEAS--RTVLKILWDTGTTTHLGHELQWAKARASAFEAL 761 (1860)
Q Consensus 684 VDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~--~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~AL 761 (1860)
++ ..+|..|-.-+.. .+|.|.+.-++.+.....+.+....+. .+++..|=.+..+.+ ..+.+.+..|+..|
T Consensus 620 i~-aG~l~~Lv~LL~s--~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d----~~vq~~Aa~ALanL 692 (810)
T 3now_A 620 IK-EQGVSKIEYYLME--DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED----EETATACAGALAII 692 (810)
T ss_dssp HH-TTHHHHHHHHHHS--CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS----HHHHHHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC----HHHHHHHHHHHHHH
Confidence 33 2457777766664 478899999999887777766665555 247777777765433 22323444555555
Q ss_pred hcCcccccccccCCcc-cchHHHHHhccChHHHHHHHHHHHHHHH
Q 000205 762 TQYEVSHIDKNILDFK-QRSFEILISETNPVVLRAMEGFQVKIIT 805 (1860)
Q Consensus 762 s~F~Ie~Lpe~iPd~~-gs~y~qLLsetn~sVL~A~eeLLtslIk 805 (1860)
+.+.-..+...+-.-. -..-.+|+...+.++....-.-+..+.+
T Consensus 693 t~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 693 TSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 5532111111111000 0124456666666666555554544443
No 58
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=54.52 E-value=19 Score=48.06 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=51.0
Q ss_pred hhhHHHHHHhhhhccccccchhHHHHhhhhhccccccchhHHHHHHHHHHHHHhcccccceechhhhhhHHhhh------
Q 000205 979 STASKFLLSWLFQHEHEHRQWSAAISIGLISSSLHLTDHKQKFQNITGLLEVLSSSRSILVRGACGIGLGFSCQ------ 1052 (1860)
Q Consensus 979 ssas~fLl~wL~q~eh~h~qwsAaisLGll~~slh~tD~k~k~~~Is~Ll~vls~s~S~~Vkgacgl~LG~~c~------ 1052 (1860)
..|.+-||.-+..+..+.-++.|.+|||++...= + +.+.+++..|..+....|+.++++|||..|.
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~-------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ 647 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-Y-------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-C-------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH
Confidence 3455556666666666666678888888876542 3 2355666677778888999999999999875
Q ss_pred --hHHHHHH
Q 000205 1053 --DLLTWAA 1059 (1860)
Q Consensus 1053 --~Ll~r~~ 1059 (1860)
++|.|+.
T Consensus 648 aid~L~~L~ 656 (963)
T 4ady_A 648 AIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 3666664
No 59
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=45.48 E-value=2.1e+02 Score=31.58 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHHhhcCCC-cc--------hhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccch--HH-------
Q 000205 627 ERNICISIAASIHDVCRKDPD-RG--------VDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDF--YT------- 688 (1860)
Q Consensus 627 ewEv~IArAasIRDICk~rPd-hG--------~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf--~S------- 688 (1860)
.|=.+.+-...+..++...|. .+ .+++..+..++.+.|..++..|++++..+++.-..++ +.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 455555555555555554432 11 2345566778888899999999999999998655432 11
Q ss_pred -HHHHHHHh-hcCCCCCHHHHHHHHHHh-cccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhc--
Q 000205 689 -AWDVIAKH-MLDYSLDPMLAQSLCILL-RWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQ-- 763 (1860)
Q Consensus 689 -AWkVLa~K-L~~~~~rPlVlkSLCeLf-p~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~-- 763 (1860)
.-..|-.| +. +.++.+...-.+.+ ...... .....+++.+-....+++| +|+.++...|.+
T Consensus 102 ~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~-----~~~~~~~e~l~~~l~~Knp-------kv~~~~l~~l~~~l 167 (278)
T 4ffb_C 102 TWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLD-----TSITQSVELVIPFFEKKLP-------KLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTS-----SSSHHHHHHHGGGGGCSCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHH
Confidence 11222223 43 45666544332222 111000 0112345555555555543 677777766654
Q ss_pred --Ccccccccc--cCCcccchHHHHHhccChHHHHHHHHHHHHH
Q 000205 764 --YEVSHIDKN--ILDFKQRSFEILISETNPVVLRAMEGFQVKI 803 (1860)
Q Consensus 764 --F~Ie~Lpe~--iPd~~gs~y~qLLsetn~sVL~A~eeLLtsl 803 (1860)
|....++.+ ++.+ -..-.+++...|++|+.+..+++..+
T Consensus 168 ~~fg~~~~~~k~~l~~i-~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPEL-LKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHTTTTCCHHHHHHHH-GGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCcCCchhHHHHH-HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 444333321 1100 11345678899999999999988554
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=43.56 E-value=40 Score=33.11 Aligned_cols=24 Identities=4% Similarity=0.057 Sum_probs=11.4
Q ss_pred HHHHhhhcCCChhhHHHHHHHHHH
Q 000205 46 DAITQCLNSSSPAVVDQTVREFCR 69 (1860)
Q Consensus 46 eal~~~l~S~~~~v~~~av~~L~r 69 (1860)
+.|..++++++|.|-..|++.|.+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~ 68 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGN 68 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Confidence 444444445555544444444443
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=38.75 E-value=57 Score=42.55 Aligned_cols=131 Identities=9% Similarity=-0.034 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhhc------cCchhHHHHhHHHHHHhhhc------ccc------ch
Q 000205 626 SERNICISIAASIHDVCRKDPD-RGVDLILSVAACIE------SRDPIIQALGLQSLAYLCEA------DVI------DF 686 (1860)
Q Consensus 626 ~ewEv~IArAasIRDICk~rPd-hG~DLL~~IS~Clk------s~~~~v~ALALdALssLCea------DVV------Df 686 (1860)
+.+..+.+.+.+++.+|...++ -..-+++.|.+.+. +.+-...=.|+-++.++.+. .+- ++
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 3457788999999999999874 22233344444333 22333334455555555432 121 44
Q ss_pred HHHH-HHHHHhhcCC-CCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhcC
Q 000205 687 YTAW-DVIAKHMLDY-SLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 687 ~SAW-kVLa~KL~~~-~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
..-. +.+-|.+.+- +.+|.|..+.|.+++..+..- .++....++..+=+.-.+++ .+|+.+|..||.+|
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~-------~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDE-------YVVYTYAAITIEKI 523 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCC-------hhHHHHHHHHHHHH
Confidence 4433 4566777651 249999999999996443221 13345555555555433222 26789999999886
Q ss_pred c
Q 000205 765 E 765 (1860)
Q Consensus 765 ~ 765 (1860)
-
T Consensus 524 ~ 524 (960)
T 1wa5_C 524 L 524 (960)
T ss_dssp T
T ss_pred H
Confidence 5
No 62
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=36.12 E-value=4.3e+02 Score=35.58 Aligned_cols=189 Identities=10% Similarity=0.131 Sum_probs=103.0
Q ss_pred cchHHHHHhhhhhhccCcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHh---hcccchhhHHhhhcCcCCCCccc-
Q 000205 551 QNKLPKLLGMLPSIASQSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQTWE---INDRAFGSLQGVLQPKLLIDFKS- 626 (1860)
Q Consensus 551 p~l~l~LL~tLPsLA~hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWk---kqdRafP~LQ~lL~~s~~~~~~~- 626 (1860)
+..+.-++++||..|+.. ++-.+.+.|. ++..-..-|.+++...-. -+......+..++......+...
T Consensus 339 ~~~r~~~lDal~~aGT~~-a~~~i~~~i~------~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l 411 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMATSE-ALLFLKRTLA------SEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPIL 411 (1056)
T ss_dssp HHHHHHHHHHHHHHCSHH-HHHHHHHHHH------TTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHH
T ss_pred HHHHHHHHHHhHhcCCHH-HHHHHHHHHH------cCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHH
Confidence 445566899999988774 4444555544 222223335555553222 22233333444444321111111
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcchhhHHHHH----HhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCC--
Q 000205 627 ERNICISIAASIHDVCRKDPDRGVDLILSVA----ACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDY-- 700 (1860)
Q Consensus 627 ewEv~IArAasIRDICk~rPdhG~DLL~~IS----~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~-- 700 (1860)
.....+|-+..++..|..+|.-..+.|..+. +.++..+..-.-++|.||-.+=-- .+-++|.|-+...
T Consensus 412 ~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p------~~l~~l~~~l~~~~~ 485 (1056)
T 1lsh_A 412 RKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP------NSIKKIQRFLPGQGK 485 (1056)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG------GGHHHHHTTSTTSSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh------hHHHHHHHhhcCccc
Confidence 2347899999999999998875667777776 344555666677777777666432 3455666665431
Q ss_pred --CC-CHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCchhhHHHHHHHHHHHhhc
Q 000205 701 --SL-DPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHELQWAKARASAFEALTQ 763 (1860)
Q Consensus 701 --~~-rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D~~~~rVrsAAy~ALs~ 763 (1860)
.. .+.|..+...=|+..+ ..+|+..+++ ||.+-.+.. .++ .||.+||..|=.
T Consensus 486 ~~~~~~~rvr~aAi~ALr~~~---~~~p~~v~~i---l~~i~~n~~--e~~---EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 486 SLDEYSTRVQAEAIMALRNIA---KRDPRKVQEI---VLPIFLNVA--IKS---ELRIRSCIVFFE 540 (1056)
T ss_dssp CCCCSCHHHHHHHHHTTTTGG---GTCHHHHHHH---HHHHHHCTT--SCH---HHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHhh---hhchHHHHHH---HHHHhcCCC--CCh---HHHHHHHHHHHH
Confidence 22 2344444444343322 3355544444 555432211 133 469999998854
No 63
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=35.81 E-value=1.3e+02 Score=39.65 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhcCCCccchHHHHHHHHHccCCCCC----chhHHHHHHHHhh----------------cccCccCCcch
Q 000205 494 SMLLGAIASVLVIHPSLGSSAVDAFATVGKMDPKLG----VPLLLAILFYSNM----------------FTRKDVVCQNK 553 (1860)
Q Consensus 494 p~~L~LlLsaLLlh~s~~~~al~~L~~L~k~dP~qa----vp~Ll~VL~fkL~----------------~~k~~e~~p~l 553 (1860)
+..+.++...++..+..+..+++++.+++....... ...+..++-..+. +..+.+.+...
T Consensus 234 ~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~ 313 (1049)
T 3m1i_C 234 TNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF 313 (1049)
T ss_dssp SSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHH
T ss_pred hhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHH
Q ss_pred HHHHHhhhhhhcc-----------CcccHHHHHHHHHHhhhcCCCCchhHHHHHHHHHH----------HhhcccchhhH
Q 000205 554 LPKLLGMLPSIAS-----------QSVMIPLVVQTILPMLHKNAKPVLYATATRLLCQT----------WEINDRAFGSL 612 (1860)
Q Consensus 554 ~l~LL~tLPsLA~-----------hk~~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkL----------WkkqdRafP~L 612 (1860)
...+.+.+..++. .+..+..++..+. ...+.........++..+..+ |......++.|
T Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll-~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~L 392 (1049)
T 3m1i_C 314 LQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI-QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQL 392 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q ss_pred HhhhcCc-------------------CCCCccchhhHHHHHHHHHHHHhhcCCC-cchhhHHHHHHhhc--cCchhHHHH
Q 000205 613 QGVLQPK-------------------LLIDFKSERNICISIAASIHDVCRKDPD-RGVDLILSVAACIE--SRDPIIQAL 670 (1860)
Q Consensus 613 Q~lL~~s-------------------~~~~~~~ewEv~IArAasIRDICk~rPd-hG~DLL~~IS~Clk--s~~~~v~AL 670 (1860)
-..+... .+.+.+++|+...+.+.+++.+|...|+ -=.-+...+++.+. +.+-...-.
T Consensus 393 v~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~ea 472 (1049)
T 3m1i_C 393 RLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINT 472 (1049)
T ss_dssp HHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q ss_pred hHHHHHHhhh-------cc-ccchHHHHHHHHHhhcCCCCCHHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhcccc
Q 000205 671 GLQSLAYLCE-------AD-VIDFYTAWDVIAKHMLDYSLDPMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTT 742 (1860)
Q Consensus 671 ALdALssLCe-------aD-VVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~ 742 (1860)
++-|+.++.+ .. ...+....-.+....+..+.+|.+....|..++....-....+++...+++.|-+.-.+.
T Consensus 473 al~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~ 552 (1049)
T 3m1i_C 473 LSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHET 552 (1049)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q ss_pred CCCchhhHHHHHHHHHHHhhcC
Q 000205 743 HLGHELQWAKARASAFEALTQY 764 (1860)
Q Consensus 743 d~n~D~~~~rVrsAAy~ALs~F 764 (1860)
++ +|+.+|..|+.+|
T Consensus 553 ~~-------~V~~~A~~al~~l 567 (1049)
T 3m1i_C 553 HE-------GVQDMACDTFIKI 567 (1049)
T ss_dssp CH-------HHHHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHH
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=34.82 E-value=3.7e+02 Score=32.08 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhccc---------chhhHHhhhcCcCCCCccchhhHHHHHHHHHHH
Q 000205 570 MIPLVVQTILPMLHKNAKPVLYATATRLLCQTWEINDR---------AFGSLQGVLQPKLLIDFKSERNICISIAASIHD 640 (1860)
Q Consensus 570 ~iP~VLrtL~pmLsk~s~~~LrA~ALRLLtkLWkkqdR---------afP~LQ~lL~~s~~~~~~~ewEv~IArAasIRD 640 (1860)
.+|.+++.|. ..++..+.-|.+.+..+-..++. +.|.|-++|... ..++....+.+++.
T Consensus 3 ~l~~lv~~L~-----s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~n 70 (457)
T 1xm9_A 3 TIPKAVQYLS-----SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRN 70 (457)
T ss_dssp CHHHHHHHHH-----SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC-----CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence 4566666655 24556666666666666544432 457777777642 34667788999999
Q ss_pred HhhcCCCcc-----hhhHHHHHHhhc-cCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Q 000205 641 VCRKDPDRG-----VDLILSVAACIE-SRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSLCILL 714 (1860)
Q Consensus 641 ICk~rPdhG-----~DLL~~IS~Clk-s~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSLCeLf 714 (1860)
++..+|+.- ..-|+.+=++++ +.++.+.-.|..+|..||..+-. ...+.. -.+..+.+++
T Consensus 71 La~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~-----~~~i~~---------g~i~~Lv~ll 136 (457)
T 1xm9_A 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-----KEELIA---------DALPVLADRV 136 (457)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-----HHHHHH---------HHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHh-----HHHHHh---------ccHHHHHHHH
Confidence 999766522 223556667887 77888999999999999976321 111110 1233455555
Q ss_pred --c---c---cCCChH--HhHHHHHHHHHHHHHhccc
Q 000205 715 --R---W---GAMDAE--AYSEASRTVLKILWDTGTT 741 (1860)
Q Consensus 715 --p---~---gavdae--eYee~~~~VI~~LW~~T~s 741 (1860)
| + ...+.. ..++..+++...||+++.+
T Consensus 137 ~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173 (457)
T ss_dssp THHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred hccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence 1 0 111111 2456677888888988754
No 65
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=31.06 E-value=2.1e+02 Score=34.14 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=79.5
Q ss_pred chhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcc----------hhhHHHHHHhhccCchhHHHHhHHHHHH
Q 000205 608 AFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRG----------VDLILSVAACIESRDPIIQALGLQSLAY 677 (1860)
Q Consensus 608 afP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG----------~DLL~~IS~Clks~~~~v~ALALdALss 677 (1860)
+.|.|-.+|..+. ..++.-+.+.++.-+|..+.++. ...++.+-+.+.+.+..++.-|.-+|..
T Consensus 284 ~l~~L~~lL~~~~------~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~n 357 (457)
T 1xm9_A 284 AIRTYLNLMGKSK------KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357 (457)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcC------CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHH
Confidence 3444555554321 23566677888889998665421 3456777788988889999999999999
Q ss_pred hhhccccchHHHHHHHHH--------hhcCCCC-----CHHHHHHHHHHhcccCCChHHhHHH--HHHHHHHHHHhcccc
Q 000205 678 LCEADVIDFYTAWDVIAK--------HMLDYSL-----DPMLAQSLCILLRWGAMDAEAYSEA--SRTVLKILWDTGTTT 742 (1860)
Q Consensus 678 LCeaDVVDf~SAWkVLa~--------KL~~~~~-----rPlVlkSLCeLfp~gavdaeeYee~--~~~VI~~LW~~T~s~ 742 (1860)
|+..+-+ ..+|.. .+.. .+ .+.+....|.-+........++-.. -...++.|.+.-.+.
T Consensus 358 ls~~~~~-----~~~i~~~~i~~Lv~lL~~-~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 358 MSRHPLL-----HRVMGNQVFPEVTRLLTS-HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHTSGGG-----HHHHHHHTHHHHHHTTTS-CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT
T ss_pred HhcCHHH-----HHHHHHhhhHHHHHhccC-CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 9885422 223322 2222 11 1234444444332211111222222 236677777765554
Q ss_pred CCCchhhHHHHHHHHHHHhhcCc
Q 000205 743 HLGHELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 743 d~n~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.. .+|+.+|+..|.+|=
T Consensus 432 ~~------~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 432 AS------PKAAEAARLLLSDMW 448 (457)
T ss_dssp TC------HHHHHHHHHHHHTTS
T ss_pred Cc------HHHHHHHHHHHHHHH
Confidence 11 256888888888763
No 66
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=29.70 E-value=3.2e+02 Score=31.24 Aligned_cols=83 Identities=7% Similarity=0.074 Sum_probs=62.3
Q ss_pred CCCCchhHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhh-cCCCcchhhHHHHHHhhccC
Q 000205 585 NAKPVLYATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCR-KDPDRGVDLILSVAACIESR 663 (1860)
Q Consensus 585 ~s~~~LrA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk-~rPdhG~DLL~~IS~Clks~ 663 (1860)
.....-|-.|..++.++ .....+.|.++..+.. +..|.+.---|.+++++|. .+|+ +.++.+.+.++++
T Consensus 82 ~~~deVR~~Av~lLg~~-~~~~~~L~~ir~~va~------D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 82 SDVYQVRMYAVFLFGYL-SKDKEILIFMRDEVSK------DNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSS 151 (240)
T ss_dssp CSSHHHHHHHHHHHHHT-TTSHHHHHHHHHTGGG------CSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCS
T ss_pred CcchHHHHHHHHHHHhc-cCcHHHHHHHHHHhCC------CCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCC
Confidence 34455677888888888 5445555666553332 3468888888999999997 8998 3778888999999
Q ss_pred chhHHHHhHHHHHH
Q 000205 664 DPIIQALGLQSLAY 677 (1860)
Q Consensus 664 ~~~v~ALALdALss 677 (1860)
|+-+--+|.+++.-
T Consensus 152 n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 152 NLHTRRAATEGLRI 165 (240)
T ss_dssp SHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHhhHH
Confidence 99999999998764
No 67
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=29.02 E-value=2.5e+02 Score=32.26 Aligned_cols=172 Identities=13% Similarity=0.141 Sum_probs=93.2
Q ss_pred chHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhcc----C--ccc---HHHHH-HHHHHh
Q 000205 512 SSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIAS----Q--SVM---IPLVV-QTILPM 581 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA~----h--k~~---iP~VL-rtL~pm 581 (1860)
..+++.+......+|.-.+.++= + +|+.+--|=.+.|+.+....|+.|..+.. . ++. +..++ .++..+
T Consensus 64 ~~ale~L~~~l~~~~~~~~~~lD-l-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKl 141 (266)
T 2of3_A 64 LAALDSLVRLADTSPRSLLSNSD-L-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKT 141 (266)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHH-H-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhhChHHHHHHHH-H-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 44777777766555543212110 1 11110001124488899999988888632 1 111 12222 223322
Q ss_pred hhcCCCCchhHHHHHHHHHHHhhc--ccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHh
Q 000205 582 LHKNAKPVLYATATRLLCQTWEIN--DRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAAC 659 (1860)
Q Consensus 582 Lsk~s~~~LrA~ALRLLtkLWkkq--dRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~C 659 (1860)
+ +++...|.-+-+++..+.+.. .++|+++-..+..++ ...+|-++....++-+-.-..|..+..+.+.|-.+
T Consensus 142 -G-d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN----~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~l 215 (266)
T 2of3_A 142 -G-EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKN----ARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPF 215 (266)
T ss_dssp -G-CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSC----HHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGG
T ss_pred -C-CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHhcCCCccccccchHHHHHH
Confidence 2 567778888888887777643 346777666554321 23333333333333333333232222222788899
Q ss_pred hccCchhHHHHhHHHHHHhhhccccchHHHHHHHH
Q 000205 660 IESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIA 694 (1860)
Q Consensus 660 lks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa 694 (1860)
+++.|+.+--.|+.++.++++..-=. .|+.++
T Consensus 216 l~D~d~~VR~aAl~~lve~y~~~Gd~---v~k~lg 247 (266)
T 2of3_A 216 VGDKDVNVRNAAINVLVACFKFEGDQ---MWKAAG 247 (266)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHTTH---HHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhHH---HHHHHh
Confidence 99999999999999999877654322 355553
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=28.84 E-value=1.6e+02 Score=33.05 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=93.0
Q ss_pred chHHHHHHHHHccCCCCCchhHHHHHHHHhhcccCccCCcchHHHHHhhhhhhc-cCcccHHHHHHHHHHhhhcCCCCch
Q 000205 512 SSAVDAFATVGKMDPKLGVPLLLAILFYSNMFTRKDVVCQNKLPKLLGMLPSIA-SQSVMIPLVVQTILPMLHKNAKPVL 590 (1860)
Q Consensus 512 ~~al~~L~~L~k~dP~qavp~Ll~VL~fkL~~~k~~e~~p~l~l~LL~tLPsLA-~hk~~iP~VLrtL~pmLsk~s~~~L 590 (1860)
..+.+.+..+++..|.. +..++|++|--. + ..+|..+.-+=|.|-+.+ +++..+|.|++=|.+|++ ..+...
T Consensus 88 qeIa~a~G~la~i~Pe~-v~~vVp~lfany---r--igd~kikIn~~yaLeeIaranP~l~~~v~rdi~smlt-skd~~D 160 (253)
T 2db0_A 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANY---R--IGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLS-SKNRED 160 (253)
T ss_dssp HHHHHHHHHHHHHCHHH-HHHHHHHHHHHS---C--CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTS-CSSHHH
T ss_pred HHHHHHHhHHHHhCHHH-HHhhHHHHHHHH---h--cCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhc-CCChHH
Confidence 45788888999999998 588999976553 4 348888888888886654 567888999999999997 455667
Q ss_pred hHHHHHHHHHHHhhcccc-hhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCC
Q 000205 591 YATATRLLCQTWEINDRA-FGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPD 647 (1860)
Q Consensus 591 rA~ALRLLtkLWkkqdRa-fP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPd 647 (1860)
|-+|+..+..+=+.+.|. -|||-++...- +++.+=++.+...++-.+.+.+|-
T Consensus 161 kl~aLnFi~alGen~~~yv~PfLprL~aLL----~D~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 161 KLTALNFIEAMGENSFKYVNPFLPRIINLL----HDGDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHHHHHHHTCCTTTHHHHGGGHHHHHGGG----GCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHhccCccccCcchHHHHHHH----cCcchhhhHHHHHHHHHHHHcCHH
Confidence 888999998888888774 57777766542 122344556666778888888885
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=27.17 E-value=1.3e+02 Score=35.93 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCC-cchhhHHHHHHhhccCchhHHHHhHHHHHHhhhccccchHHHHHHHHHhhcCCCCCHHHHHHH
Q 000205 632 ISIAASIHDVCRKDPD-RGVDLILSVAACIESRDPIIQALGLQSLAYLCEADVIDFYTAWDVIAKHMLDYSLDPMLAQSL 710 (1860)
Q Consensus 632 IArAasIRDICk~rPd-hG~DLL~~IS~Clks~~~~v~ALALdALssLCeaDVVDf~SAWkVLa~KL~~~~~rPlVlkSL 710 (1860)
+-|+.|+|-.|+.+.. --.++.+.+.+|+.+++|.+...|+=+.+.|+.- .=|..-.|---.+.+-+ +++|.|...-
T Consensus 119 ~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~~~~~~l~~ll~-d~n~~V~~~A 196 (355)
T 3tjz_B 119 SYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVKRWVNEAQEAAS-SDNIMVQYHA 196 (355)
T ss_dssp HHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHTT-CSSHHHHHHH
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhc-CCCccHHHHH
Confidence 5699999999999885 7788888888999999999999999999999864 34555567444444555 7788887654
Q ss_pred HHHh
Q 000205 711 CILL 714 (1860)
Q Consensus 711 CeLf 714 (1860)
..++
T Consensus 197 l~lL 200 (355)
T 3tjz_B 197 LGLL 200 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=27.08 E-value=4.7e+02 Score=33.09 Aligned_cols=150 Identities=11% Similarity=0.043 Sum_probs=87.9
Q ss_pred cchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcc---------hhhHHHHHHhhccCchhHHHHhHHHHHH
Q 000205 607 RAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRG---------VDLILSVAACIESRDPIIQALGLQSLAY 677 (1860)
Q Consensus 607 RafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG---------~DLL~~IS~Clks~~~~v~ALALdALss 677 (1860)
.+.|.|-.+|..+ ...++.-+.+.++.-+|..+.... ..-++.|-+-+.+.+..++--|..+|..
T Consensus 308 ~~v~~Ll~LL~~s------~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~n 381 (584)
T 3l6x_A 308 EVVRIYISLLKES------KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381 (584)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHccC------CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445555555432 235666678888999997653211 2336666778888889999999999999
Q ss_pred hhhccccc-hHHHHHHHHHh---hcCCCC------CHHHHHHHHHHhcccCCChHHhHH--HHHHHHHHHHHhccccCCC
Q 000205 678 LCEADVID-FYTAWDVIAKH---MLDYSL------DPMLAQSLCILLRWGAMDAEAYSE--ASRTVLKILWDTGTTTHLG 745 (1860)
Q Consensus 678 LCeaDVVD-f~SAWkVLa~K---L~~~~~------rPlVlkSLCeLfp~gavdaeeYee--~~~~VI~~LW~~T~s~d~n 745 (1860)
|+...-.. +.. =.++.+- +..-.+ .+.++.+.|.-+........++-+ .....|..||+.-.+.+ .
T Consensus 382 Ls~~~~~~~~I~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~ 459 (584)
T 3l6x_A 382 LAVDARNKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-R 459 (584)
T ss_dssp HHTTCSCHHHHH-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-S
T ss_pred HhCChhHHHHHH-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-C
Confidence 99865321 111 1233222 222111 356677777777644333233222 24567888998765432 1
Q ss_pred chhhHHHHHHHHHHHhhcCc
Q 000205 746 HELQWAKARASAFEALTQYE 765 (1860)
Q Consensus 746 ~D~~~~rVrsAAy~ALs~F~ 765 (1860)
.+. ..+++..+...|.+|+
T Consensus 460 ~~~-v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 460 SEK-EVRAAALVLQTIWGYK 478 (584)
T ss_dssp CHH-HHHHHHHHHHHHHTSH
T ss_pred ChH-HHHHHHHHHHHHHcCH
Confidence 223 3466777777777776
No 71
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=22.57 E-value=5.1e+02 Score=33.58 Aligned_cols=184 Identities=14% Similarity=0.053 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhhcccchhhHHhhhcCcCCCCccchhhHHHHHHHHHHHHhhcCCCcchhhHHHHHHhhccCchhHHHH
Q 000205 591 YATATRLLCQTWEINDRAFGSLQGVLQPKLLIDFKSERNICISIAASIHDVCRKDPDRGVDLILSVAACIESRDPIIQAL 670 (1860)
Q Consensus 591 rA~ALRLLtkLWkkqdRafP~LQ~lL~~s~~~~~~~ewEv~IArAasIRDICk~rPdhG~DLL~~IS~Clks~~~~v~AL 670 (1860)
|-+|-+.+..+ ..=+.-|.-|..++... ...+||++-+-.-.+|-.-..-.+ =..+++.+-.++++.+.-+.|.
T Consensus 245 RETaAQtLGaL-~hLp~e~~IL~qLV~~l----~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAV 318 (800)
T 3oc3_A 245 RDAAAYLLSRI-YPLIGPNDIIEQLVGFL----DSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLL 318 (800)
T ss_dssp HHHHHHHHHHH-TTTSCSCCHHHHHTTGG----GCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHH-HhCChhHHHHHHHHhhc----CCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHH
Confidence 34444444444 33333366666666321 234799999999999988111111 1233444456777778888888
Q ss_pred hHHHHHHhhhccccch--HHHHHHHHHhhcCCCCC-HHHHHHHHHHhcccCCChHHhHHHHHHHHHHHHHhccccCCCch
Q 000205 671 GLQSLAYLCEADVIDF--YTAWDVIAKHMLDYSLD-PMLAQSLCILLRWGAMDAEAYSEASRTVLKILWDTGTTTHLGHE 747 (1860)
Q Consensus 671 ALdALssLCeaDVVDf--~SAWkVLa~KL~~~~~r-PlVlkSLCeLfp~gavdaeeYee~~~~VI~~LW~~T~s~d~n~D 747 (1860)
|-++|.-..+-+-++- -..|+.|... .+..-. -.|..=+..|+.... ++...+ +.+.+||-|-.|.-
T Consensus 319 AAetLiPIA~p~~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~-~a~~dp----~LVPRL~PFLRHtI---- 388 (800)
T 3oc3_A 319 SAELLCHFPITDSLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENP-ELSIPP----ERLKDIFPCFTSPV---- 388 (800)
T ss_dssp HHHHHTTSCCSSTHHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCT-TCCCCS----GGGGGTGGGGTCSS----
T ss_pred HHHHhhhhcchhhHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCc-ccccCh----HHHHHHHhhhcCCc----
Confidence 8888877774443332 3456666644 222111 112222222332111 111112 88999999977643
Q ss_pred hhHHHHHHHHHHHhhcCcccccccccCCcccchHHHHHhccChHHHHHHHHHH
Q 000205 748 LQWAKARASAFEALTQYEVSHIDKNILDFKQRSFEILISETNPVVLRAMEGFQ 800 (1860)
Q Consensus 748 ~~~~rVrsAAy~ALs~F~Ie~Lpe~iPd~~gs~y~qLLsetn~sVL~A~eeLL 800 (1860)
..||.+++++|..|-. .+.-+..|++++-|.+.+++....+.-
T Consensus 389 ---TSVR~AVL~TL~tfL~-------~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 389 ---PEVRTSILNMVKNLSE-------ESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ---HHHHHHHHHHTTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4789999999999871 112356799999999999888765544
Done!