Your job contains 1 sequence.
>000208
MTSTETSSVGSLVSSLVSSFKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLSKDAIKE
GQKLDSDQCNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFE
PEVLNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQ
GSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAE
KFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRK
CFFKKIWKCCRTLFSLGTLERRDAFTVLSLYLSYSSYTEGSENSDRSDRGEEFDIRAVRE
FWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDL
WAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQ
FSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKS
YENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQ
IAFLSNLASVAKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSP
ENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCT
FEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFP
ISFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINIC
KQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASI
FHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTT
VVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAA
YEALASALKALVGPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARA
RRAILLNWKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLP
MLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSS
VLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKY
YIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSV
AVLFSKLADQTEIVGSAKECQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKV
RAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQL
VPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQ
LLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNL
SITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDVVTIKNESLKIGED
PDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSSSSFFGNREAYKQLLEIE
KEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA
NILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMF
PKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000208
(1857 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2129301 - symbol:AT4G17610 species:3702 "Arabi... 4598 0. 1
DICTYBASE|DDB_G0285499 - symbol:DDB_G0285499 "Probable me... 618 5.7e-62 5
DICTYBASE|DDB_G0278965 - symbol:DG2033 "tRNA/rRNA methylt... 422 6.7e-51 6
UNIPROTKB|Q13395 - symbol:TARBP1 "Probable methyltransfer... 468 4.9e-45 6
UNIPROTKB|J9P5E1 - symbol:TARBP1 "Uncharacterized protein... 469 1.3e-44 5
UNIPROTKB|F1PWU0 - symbol:TARBP1 "Uncharacterized protein... 469 1.5e-44 5
UNIPROTKB|F1RGW6 - symbol:TARBP1 "Uncharacterized protein... 469 2.0e-44 6
UNIPROTKB|F1N6T6 - symbol:TARBP1 "Uncharacterized protein... 462 6.9e-44 4
UNIPROTKB|F1NP06 - symbol:TARBP1 "Uncharacterized protein... 465 1.8e-42 4
ZFIN|ZDB-GENE-090313-346 - symbol:tarbp1 "TAR (HIV-1) RNA... 445 1.3e-41 4
ZFIN|ZDB-GENE-090313-347 - symbol:si:dkey-85a20.4 "si:dke... 445 1.8e-40 1
CGD|CAL0001648 - symbol:orf19.5038 species:5476 "Candida ... 395 9.6e-32 4
FB|FBgn0038953 - symbol:CG18596 species:7227 "Drosophila ... 370 9.8e-30 3
SGD|S000002270 - symbol:TRM3 "2'-O-ribose methyltransfera... 347 3.6e-26 3
WB|WBGene00020498 - symbol:T14B4.1 species:6239 "Caenorha... 329 7.0e-23 4
TIGR_CMR|CPS_0784 - symbol:CPS_0784 "RNA methyltransferas... 153 2.1e-09 1
TIGR_CMR|BA_0547 - symbol:BA_0547 "RNA methyltransferase,... 129 7.5e-07 1
TIGR_CMR|GSU_1462 - symbol:GSU_1462 "RNA methyltransferas... 141 2.1e-06 1
UNIPROTKB|P0AGJ5 - symbol:yfiF "predicted methyltransfera... 142 4.7e-06 1
TIGR_CMR|CPS_4975 - symbol:CPS_4975 "tRNA (guanosine-2'-O... 133 1.5e-05 1
UNIPROTKB|P0AGJ2 - symbol:trmH species:83333 "Escherichia... 131 2.3e-05 1
UNIPROTKB|Q3A9P4 - symbol:CHY_2335 "RNA methyltransferase... 130 3.5e-05 1
TIGR_CMR|CHY_2335 - symbol:CHY_2335 "RNA methyltransferas... 130 3.5e-05 1
>TAIR|locus:2129301 [details] [associations]
symbol:AT4G17610 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA;ISS] InterPro:IPR001537 Pfam:PF00588
EMBL:CP002687 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 IPI:IPI00544600 RefSeq:NP_193496.1 UniGene:At.54378
PRIDE:F4JP86 EnsemblPlants:AT4G17610.1 GeneID:827480
KEGG:ath:AT4G17610 OMA:AIPREFT ArrayExpress:F4JP86 Uniprot:F4JP86
Length = 1850
Score = 4598 (1623.6 bits), Expect = 0., P = 0.
Identities = 985/1873 (52%), Positives = 1253/1873 (66%)
Query: 20 FKLVPPAAIPPMLDCILTSTGSSASAIFFSLLDLS----KDAIKEGQKLDSDQCNYIASM 75
FK VPPAAIP LDC+L+STG S S +F SL++ +D + ++ DSD CN+IAS+
Sbjct: 13 FKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSDDCNHIASL 72
Query: 76 VGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVV 135
V LCHLLK G F+A NH+A Q F+W+ FIPLMKM A++ ++LN+I ESFFDVV
Sbjct: 73 VAGLCHLLKNFG----FVAADNHNALQLFVWRVFIPLMKMVRAYDLDMLNKIVESFFDVV 128
Query: 136 TKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKEC 195
+TN L +LVP + SVGFS+G+ Q+EESD I+WG + N DMD+
Sbjct: 129 IETNVLDMLGVSLVPFLLRSVGFSMGMRQHEESDFIKWGDLC----LRDSLNTIDMDENY 184
Query: 196 MLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFAANLLWYLCNMTE 255
+ LS S +P SCH+L L++++A ++ QAAP +S FAA +LW LCN TE
Sbjct: 185 IAQLSGSFPIPLSCHLLNLILNAAFQSHQAAPKVES----------FAAGMLWDLCNTTE 234
Query: 256 RLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFS 315
RLL QSVEHRSCA++FLLP I KAF S S +IS G+++ILSR F K+IW+CC+ LFS
Sbjct: 235 RLLSQSVEHRSCAVSFLLPAIFKAFSSQSSLKISHQGNLFILSRNGFIKRIWECCKKLFS 294
Query: 316 LGTLERRDAFTVXXXXXXXXXXTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGL 375
+G++ERRDA++V T+G+E+ +FD+R+ +EFW+EIK GLV +E L
Sbjct: 295 VGSIERRDAYSVLSLCLSSGSWTDGTESFVSEKDAVQFDLRSEQEFWDEIKIGLVVDESL 354
Query: 376 VRKQSLHILKAVLQIRGENQGHSGVSDMRSQGKNSTARGMTKRDLWAVKEAKSLGVGKLC 435
VRKQSLHILK+VL I ++ S + S R T + A ++ +G
Sbjct: 355 VRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTRKETWAEKEA--KSLGVGELYGS 412
Query: 436 YSTDLALKQGQQQWEAFILLYE-----MLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPG 490
+ L +QG Q + + E ++E ++ ++ +L +L D
Sbjct: 413 VDSGLTSQQGWQAFLLLYEMLEEYGTHLVEAAWSNQIDLLIKS--SLRYDGTLKSDC--N 468
Query: 491 STGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPE 550
++ H +IF+WL VLW RGF H NP VR +M+SF GIEW+ Y+ C +S+ +
Sbjct: 469 NSHHGHMETPDEEAKIFNWLEVLWNRGFRHDNPLVRCTVMESFFGIEWRRYKTCTQSMSQ 528
Query: 551 SFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASV 610
+F+LGPF+EGLNDP HHKDFG KG+Y+SRTIE AA ++ Y S L+ R ++ FL NLAS+
Sbjct: 529 TFVLGPFIEGLNDPTHHKDFGLKGIYTSRTIEGAAQYVSAYTSCLNPRNRVGFLINLASL 588
Query: 611 AKQQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSD 670
AK+QSF R G MAL +CI S A V + + + D F +E S + +D +
Sbjct: 589 AKKQSFCRAGFMALVQCIVSTAYVVGGYGDKEMGHLEDKF-SGTAQESSCGHLSQDDMTH 647
Query: 671 LLDFLRFVIESSKQHFNPNYRLRG----YSFWQFKLW-----FPVCEKVLEAAASLMCTF 721
+LD L+FV ESS+QHFN YR+R + +F L F V +KVLE AAS++
Sbjct: 648 ILDVLKFVAESSRQHFNHKYRIRASLTILNTLKFLLLIVLFHFLVYQKVLETAASVVNPC 707
Query: 722 EVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPI 781
VPL LL F+SA+PREFTD+ G LR + EWL GC+++ S + C +L SL ++
Sbjct: 708 NVPLGTLLQFVSAIPREFTDHDGLLRKMMLEWLQGCNRKTSNSLCTDGTRLLASLYEYLK 767
Query: 782 SFTSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICK 841
FTS N + DDEDL++W+S+ KRWARVFFL+I E+ L ++ F+QN G++ +
Sbjct: 768 GFTS----DNV-ESFDDEDLEAWDSQTKRWARVFFLMINKEEHLTDIIMFVQNNGLSFFQ 822
Query: 842 QSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLKTVDQFSYAEASIF 901
+ NH++ KFLI L+ L E+Q MQ+ SE +++KS I S + + +AS
Sbjct: 823 EKNHLKRAPAKFLIFILSMLLELQNMQDGISELSSSVKSKSGIGSDEQTGKQIVVDASSI 882
Query: 902 HEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTV 961
+K A + ++L+EL+ F++ SCSIFWS+ +E LP SVIGKLGGPSQRRLS TTT
Sbjct: 883 KKKFAVVLLSILKELIPFADSSCSIFWSHTTVENGALPGSVIGKLGGPSQRRLSVPTTTA 942
Query: 962 VLQAIMSVKAVASISSWCARLKRNAS-IEFAYDFMWNLFWKTIQSPTSDSESGAEVCXXX 1020
VL+A++SVK + ISS+CA+ ++ A F W TI S +SE+ AE+
Sbjct: 943 VLEAVLSVKTIGLISSYCAQFTSGVGELKLALAFFWKFTQHTISSQICNSEAAAEIYLAA 1002
Query: 1021 XXXXXXXXXXXVGPQALCFFK--KNDKLMLSAVEGKPLLDSWVQAFLQNINXXXXXXXXX 1078
V + F +ND +LS V+G+ L V AF++NIN
Sbjct: 1003 FEALASVLNAFVSLCSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRNINHLLTAGVLV 1062
Query: 1079 XXXXXXXXNWKWLCLESLLSLPYC--GLENGANCSYFFSDDVVRYIFNDLVESLENAGEG 1136
+WKWLC+ESLLS+ + + FFSDD V+ IF D+VESLENAGEG
Sbjct: 1063 RSRRAVLLSWKWLCVESLLSVMHILDARRIPEDRKSFFSDDTVKSIFQDIVESLENAGEG 1122
Query: 1137 SLLPMLRSVRLTLDLFAXXXXXXXXXXCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAA 1196
S LPML+SVRL L + A GVDTQ MW LV+S WILHISC KRRVAPIAA
Sbjct: 1123 SALPMLKSVRLALGILASGKSSLDGFS--GVDTQTMWQLVKSCWILHISCKKRRVAPIAA 1180
Query: 1197 LLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPW 1256
LLSSVLH S+FS ++MH+ E+ GPLKWFVEKVLEEG KSPRTIRLAALHL+GLWL P
Sbjct: 1181 LLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLEEGQKSPRTIRLAALHLSGLWLMYPR 1240
Query: 1257 IIKYYIKELKLLTLYGSVXXXXXXXXXXXXNYDAKTEVSLLAKSPVPELTEAFINTELYA 1316
IKYYIKEL+LLTLYGSV N DA+TEVSLLAKSP PELTE FINTELYA
Sbjct: 1241 TIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDARTEVSLLAKSPDPELTELFINTELYA 1300
Query: 1317 RVSVAVLFSKLADQTEIVGSA---KECQDAXXXXXXXXXXXXXXVVNDKDLARELYKKYS 1373
RVSVA LF KLA+ +V A ++CQDA V+DKDLA+ELYKKYS
Sbjct: 1301 RVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGKLFLLELLDAAVHDKDLAKELYKKYS 1360
Query: 1374 AIHRRKVRAWQMICILSRFVDNDIVGQV---THF-LHISLY----RNNLPSVRQYLETFA 1425
AIHRRK+RAWQMICI+SRFV NDIVGQV H LH+SL RNNLP+VRQYLETFA
Sbjct: 1361 AIHRRKIRAWQMICIMSRFVCNDIVGQVMDSVHICLHVSLQEQTERNNLPAVRQYLETFA 1420
Query: 1426 ITIYLKFPSLVAEQLVPILRDYDMRPQA--LSSYVFIAANVILHASKAVQFRHLEDLLPP 1483
I IYLKFP+LV EQLVPIL++YD + Q + + + ANVILHA K Q HL +LLPP
Sbjct: 1421 INIYLKFPALVKEQLVPILKNYDSKAQVNLRKTKMIVFANVILHAEKIAQQTHLRELLPP 1480
Query: 1484 IVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCT 1543
I+PLLTSHHHSLRGF QLLV++VL +LFP ++ +S + LEK FE+LKSYL KN DC+
Sbjct: 1481 ILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVESTSSHTISLEKLSFENLKSYLDKNPDCS 1540
Query: 1544 RLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQVLNFLNDVREDLRYSM 1603
RLRASM G+LDAYDP+ S TPA +FVNR +E EFECVPT LM+ VL+FLNDVREDLR SM
Sbjct: 1541 RLRASMEGFLDAYDPSTSATPAGVFVNRVEESEFECVPTCLMDNVLSFLNDVREDLRASM 1600
Query: 1604 AKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITLPKHENQDNSS 1663
AKDVVTIKNE KI E+P +S D+E +L + S LDFQ+KITL KHE QD SS
Sbjct: 1601 AKDVVTIKNEGFKIDEEPKRRLIMSTTDEE----RLSEPSSLDFQRKITLSKHEKQDASS 1656
Query: 1664 SSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGL 1723
+S N E YK+L E+EKEDEL Q+L++RS+ +E +++ RQ +LVASL+DRIPNLAGL
Sbjct: 1657 TSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLILVASLVDRIPNLAGL 1716
Query: 1724 ARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSV 1783
ARTCEVFKAS LA+ADA+I+HDKQFQLISVTAEKWVPI+EVPVNS+K FLE+KK EGFS+
Sbjct: 1717 ARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSI 1776
Query: 1784 LGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVS 1843
LGLEQTANS+ LD+Y FPKKTVLVLGREKEGIPVDIIH+LDACIEIPQLGVVRSLNVHVS
Sbjct: 1777 LGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVS 1836
Query: 1844 GAIALWEYTRQQR 1856
GAIALWEYTRQQR
Sbjct: 1837 GAIALWEYTRQQR 1849
>DICTYBASE|DDB_G0285499 [details] [associations]
symbol:DDB_G0285499 "Probable methyltransferase
TARBP1" species:44689 "Dictyostelium discoideum" [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 dictyBase:DDB_G0285499 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
RefSeq:XP_638091.1 ProteinModelPortal:Q54N52
EnsemblProtists:DDB0186533 GeneID:8625137 KEGG:ddi:DDB_G0285499
InParanoid:Q54N52 OMA:EIFNIEC ProtClustDB:CLSZ2846707
Uniprot:Q54N52
Length = 1677
Score = 618 (222.6 bits), Expect = 5.7e-62, Sum P(5) = 5.7e-62
Identities = 159/506 (31%), Positives = 272/506 (53%)
Query: 1361 DKD-LARELYKKYSAIHRRKVRAWQMICILSRFVD---NDIVGQVTHFLHISLYRNNLPS 1416
DK+ L ++ Y + IHR KVR WQ +CILS+F+ N+ + ++ + + NLPS
Sbjct: 1192 DKEFLKKKEYILNTPIHRLKVRIWQSLCILSKFIQPNSNEQMNEIGSAIVKIFHLFNLPS 1251
Query: 1417 VRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRH 1476
+R+Y+ F + + ++ L+ +L + ++R LSS V A ++L+ Q
Sbjct: 1252 IRKYVNIFLVNFMKRHHEIIEIHLIQLLDNLNVRGDILSSIVVTAGYILLNIENNNQL-- 1309
Query: 1477 LEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKS-- 1534
+ + I+ L TS H ++ ++ Q+ + T D ++K+ + + LK
Sbjct: 1310 YQKVFNRILSLTTSGHQVVKTIASSIIVQI----YDT-DNKLAEKLSSDSTMLAFLKQLH 1364
Query: 1535 -YLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVNRDKELEFECVPTSLMEQ-VLNFL 1592
+ N + +D N + + V D + + P+ ++ + FL
Sbjct: 1365 YFFTNNQQAFKSLEKQKQVMDLEKKNQFSSSSFQNVFYDTPVLEQLSPSEIISPGIFEFL 1424
Query: 1593 NDVREDLRYSMAKDVVT-IKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKI 1651
+ YS+ + ++++ L+ + + + ++ +S + +K I
Sbjct: 1425 LSSND---YSIGNPLEKQLRDKLLEKSKYLPKVIGVDNGNENDSDDDDENHKENNIKKLI 1481
Query: 1652 --TLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVL 1709
T E DN+ +S+ + L++E DEL ++ +RQ ++
Sbjct: 1482 SNTDDIDEYIDNNPTSYQKKILPWSNDLDLETRDEL-------------VVKKARQSIII 1528
Query: 1710 VASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSI 1769
VAS ID+IPNLAGLARTCE+F L ++D I +K+FQ I+VTAEKW+P+ EV N +
Sbjct: 1529 VASFIDKIPNLAGLARTCEIFNIECLVVSDLKIRDNKEFQNITVTAEKWLPMEEVAENDL 1588
Query: 1770 KHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEI 1829
K +L KK +G+S+LG+EQT++S+ L+++ FP+K+VLVLG+EKEGIP + I++LD CIEI
Sbjct: 1589 KQYLLLKKSQGYSLLGVEQTSSSVLLNKFEFPQKSVLVLGKEKEGIPTEFINLLDKCIEI 1648
Query: 1830 PQLGVVRSLNVHVSGAIALWEYTRQQ 1855
PQLG++RSLNVHVSG++ +W+Y RQQ
Sbjct: 1649 PQLGIIRSLNVHVSGSLMIWDYFRQQ 1674
Score = 119 (46.9 bits), Expect = 5.7e-62, Sum P(5) = 5.7e-62
Identities = 41/185 (22%), Positives = 82/185 (44%)
Query: 446 QQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGE 505
Q+ W F L+YE L++++ HL++ W +L++ S + P S+ + + G
Sbjct: 362 QKLWNTFFLIYESLDDFTIHLIQPVWKEIDSLVIGSS---SSSPMSSPSSKE------GL 412
Query: 506 IFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPV 565
F+W+ +L++R H NP V +++ L K Y +P F+ G ++ +++
Sbjct: 413 DFEWVEILFKRCLNHQNPAVIKVLIIDVLNS--KQY---IPYLPIEFISGTLIQSISNAA 467
Query: 566 HHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALA 625
+K T+ TI ++ ++ + K I + N V Q V ++
Sbjct: 468 LYKGV-TESTIHVATINFFTNYYQSLSTIKEKSKFIQTIINCLVVNHFQKELLVNIIKFI 526
Query: 626 ECIAS 630
E I +
Sbjct: 527 ETITN 531
Score = 59 (25.8 bits), Expect = 5.7e-62, Sum P(5) = 5.7e-62
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 361 FWEEIKRGLVD-EEGLVRKQSLHILKAVLQIRGENQ 395
FW+ I GL D + L RK+S ++LK ++I E +
Sbjct: 302 FWQSIINGLNDINDSLNRKRSSYLLKKSIKISIEKE 337
Score = 48 (22.0 bits), Expect = 5.7e-62, Sum P(5) = 5.7e-62
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 1172 MWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMME---NTP 1219
M L +SS H++ NK ++ L+S L S F +E + E NTP
Sbjct: 1156 MGKLSKSSSSHHMNENKNKIIEFINLISMKLLNSNFDKEFLKKKEYILNTP 1206
Score = 44 (20.5 bits), Expect = 1.5e-61, Sum P(5) = 1.5e-61
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 1209 EEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKLL 1268
EEE+ N LK + K+L + + L + T +W P I Y+ E+
Sbjct: 1026 EEEIFNHHNL---LKEYFYKLLNQSSLVIGLYNLLIMKTTMIWKEYPEIAILYVDEIYES 1082
Query: 1269 TLYG 1272
++G
Sbjct: 1083 LVFG 1086
Score = 41 (19.5 bits), Expect = 9.7e-54, Sum P(4) = 9.7e-54
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1296 LLAKSPVPELTEAFINTELYARVSVAVLFSKLADQT 1331
L +K +P L FI+ L +S A L+ + + T
Sbjct: 441 LNSKQYIPYLPIEFISGTLIQSISNAALYKGVTEST 476
Score = 39 (18.8 bits), Expect = 5.7e-62, Sum P(5) = 5.7e-62
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 32 LDCILT-STGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNY 71
LDCIL ++ + I L++ K +I + L+S+ NY
Sbjct: 32 LDCILIIDDNNNNNNILEQLIEKLK-SISNIEYLNSNNINY 71
Score = 39 (18.8 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 49 SLLDLSKDAIKEGQKLDSDQCNYIASM 75
S LD + K Q L+ Q NYI ++
Sbjct: 744 SFLDFLLNNFKNQQLLNQLQSNYIPTL 770
>DICTYBASE|DDB_G0278965 [details] [associations]
symbol:DG2033 "tRNA/rRNA methyltransferase SpoU
family protein" species:44689 "Dictyostelium discoideum"
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0032259
"methylation" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR001537 Pfam:PF00588
dictyBase:DDB_G0278965 GenomeReviews:CM000152_GR EMBL:AAFI02000026
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
ProtClustDB:CLSZ2846707 RefSeq:XP_641892.2
ProteinModelPortal:Q54XF8 EnsemblProtists:DDB0220033 GeneID:8621818
KEGG:ddi:DDB_G0278965 InParanoid:Q54XF8 OMA:FWIRILY Uniprot:Q54XF8
Length = 1680
Score = 422 (153.6 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 76/155 (49%), Positives = 112/155 (72%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVP 1760
+ SRQ ++ +LI+ PN+AGL RTCE+F +AI + +L D QFQ +SV+AEKWVP
Sbjct: 1518 KKSRQSIIVCGTLIENTPNIAGLIRTCEIFNVEEVAIPNNKLLSDPQFQRVSVSAEKWVP 1577
Query: 1761 IVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII 1820
+EV ++ +L+ KK +G+S+LG+EQT+ S L + FP K +L+LG+E+ GIP + +
Sbjct: 1578 TIEVTKPNLLDYLKLKKKQGYSILGVEQTSQSKRLSSFQFPNKCLLLLGQEQNGIPAEYL 1637
Query: 1821 HMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
++D +EI QLG +RSLNVHVSG+I +WEYT+QQ
Sbjct: 1638 SIIDYAVEIEQLGQIRSLNVHVSGSIVIWEYTQQQ 1672
Score = 140 (54.3 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 48/210 (22%), Positives = 96/210 (45%)
Query: 1363 DLARELYKKYSAIHRRKVRAWQMICILSRFVD-------NDIVGQVTHFLHISLYRNNLP 1415
+L++ Y + S +++ K + W+ +C L+ V ND+ +V+ + +L N
Sbjct: 1132 ELSKREYSQQSRLNKIKCKLWRTLCSLTHIVSFTSGGESNDLYEKVSDLMWKTLELKNHG 1191
Query: 1416 SVRQYLETFAITIYLKFPSL--VAEQLVPILR-DYDMRPQALSSYVFIAANVILHASKAV 1472
+VR ++ F + + +K P++ +QL+ + + Q +S + I++ + +
Sbjct: 1192 NVRYLIQLFIVNVLIKSPNIQITNQQLINRMELSINADYQISASLIIISSTFLYYLLNNY 1251
Query: 1473 QFRHLED----LLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSC 1528
Q H +D L I+P T HH++R +QL +Y ++ K F L + L
Sbjct: 1252 Q-DHYQDCVINLFKTILPWSTDFHHAVRTTSQLAIYSIINKKFKILQQFNDNQFILS--- 1307
Query: 1529 FEDLKSYLAKNSDCTRLRASMSGYLDAYDP 1558
L +YL + RLR + ++ DP
Sbjct: 1308 ---LYNYLDTHKIQKRLREKQTLFIQNDDP 1334
Score = 87 (35.7 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 28/117 (23%), Positives = 48/117 (41%)
Query: 428 SLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDN 487
++ + + + L Q+QW F LYE +E +HL W L L DN
Sbjct: 352 TVALPSMLWKNQLPKNWEQKQWNLFFSLYECFDETKSHLFIPVWVQIHNLSANVKLD-DN 410
Query: 488 LPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRY-MIMQSFLGIEWKSYEN 543
+ P+ I+ W+ +L+ RGF H N ++ +I+ + + Y N
Sbjct: 411 FT--------QYSNPTS-IYFWIRILYLRGFNHININIKKRVILDALADVSIVPYLN 458
Score = 72 (30.4 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 353 FDIRAVREFWEEIKRGLVDEEGLVRKQSLHILK 385
F+I E+W + L+D++ L RKQ++H+LK
Sbjct: 318 FNIIEKVEYWNILFESLIDKDSLPRKQAIHLLK 350
Score = 70 (29.7 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 34/186 (18%), Positives = 76/186 (40%)
Query: 1088 WKWLCLESLLSLPYCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRL 1147
+KW C+ S+L Y + ++ ++ + + F+ + +L+NA L+P+ + +
Sbjct: 861 YKWTCIHSIL---YSNSSSSSSSTFSYDQEKT---FDLAISALDNATGSVLIPIFECLSI 914
Query: 1148 TLDLFAXXXXXXXXXXCRGVDTQMMWHLVRSSWILHISCNKRRVAPIAALLSSVLHYSVF 1207
+ + + M L + S+ L S + R+ + +++L SV
Sbjct: 915 VISANKKQDDTNLITS----NEEYMNQLFKQSY-LAFSDSNRKPNNLCVAFTNLLFNSVL 969
Query: 1208 SEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKYYIKELKL 1267
E + T +K ++++ L + +S R H G+W + ++ E+
Sbjct: 970 FENPV-----TIPLIKEYLKQTLGDWGESARISCGLLSHCCGIWSKKTNTLPIFLNEIMD 1024
Query: 1268 LTLYGS 1273
L L S
Sbjct: 1025 LCLLTS 1030
Score = 57 (25.1 bits), Expect = 7.2e-48, Sum P(6) = 7.2e-48
Identities = 35/149 (23%), Positives = 68/149 (45%)
Query: 699 QFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISA---LPREFTDYGG--SLRARVRE- 752
Q+ L+F + E E + L +P+ + +H +SA L FT Y S+ +R
Sbjct: 372 QWNLFFSLYECFDETKSHLF----IPVWVQIHNLSANVKLDDNFTQYSNPTSIYFWIRIL 427
Query: 753 WLSGCS------KQQSANNCKSRMLVLKSLNDFPISFTSH--PSLS--NAFVTCDDEDLD 802
+L G + K++ + + + ++ LN + I F+ P L +A+ + +L+
Sbjct: 428 YLRGFNHININIKKRVILDALADVSIVPYLNGYGIEFSEFQLPLLKALDAYELSNPYELE 487
Query: 803 SWESKAKRWARVFFLVIKDEQDLAPVLKF 831
+ +R + F+ IK DL +L+F
Sbjct: 488 RNKELGERLSTYFYHCIKSTSDLEVLLQF 516
Score = 43 (20.2 bits), Expect = 5.3e-32, Sum P(3) = 5.3e-32
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 44 SAIFFSLLDLSKDAIKEGQ 62
S I SLLD+SK IK+ Q
Sbjct: 1387 SVIPMSLLDISKRLIKDFQ 1405
Score = 41 (19.5 bits), Expect = 6.7e-51, Sum P(6) = 6.7e-51
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1624 AETLSDLDKEESFSQLPKDSLLDFQKKIT 1652
+ET+ + + S +D +LDFQ++IT
Sbjct: 1466 SETIINSETSNIPSSTEED-ILDFQRRIT 1493
Score = 40 (19.1 bits), Expect = 9.2e-39, Sum P(4) = 9.2e-39
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 662 NFPCNDKSDLLDFLR 676
N P + + D+LDF R
Sbjct: 1476 NIPSSTEEDILDFQR 1490
Score = 38 (18.4 bits), Expect = 1.1e-47, Sum P(6) = 1.1e-47
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 1264 ELKLLTLYGSVXXXXXXXXXXXXNYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVL 1323
+ K ++ + +YD + L A S + T + + ++ +S+ +
Sbjct: 860 QYKWTCIHSILYSNSSSSSSSTFSYDQEKTFDL-AISALDNATGSVL-IPIFECLSIVIS 917
Query: 1324 FSKLADQTEIVGSAKE 1339
+K D T ++ S +E
Sbjct: 918 ANKKQDDTNLITSNEE 933
>UNIPROTKB|Q13395 [details] [associations]
symbol:TARBP1 "Probable methyltransferase TARBP1"
species:9606 "Homo sapiens" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] InterPro:IPR001537
InterPro:IPR016024 Pfam:PF00588 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AL355472 eggNOG:COG0566 EMBL:U38847
EMBL:AL136124 IPI:IPI00298447 PIR:S62356 RefSeq:NP_005637.3
UniGene:Hs.498115 PDB:2HA8 PDBsum:2HA8 ProteinModelPortal:Q13395
SMR:Q13395 IntAct:Q13395 STRING:Q13395 PhosphoSite:Q13395
DMDM:74739787 PaxDb:Q13395 PRIDE:Q13395 DNASU:6894
Ensembl:ENST00000040877 GeneID:6894 KEGG:hsa:6894 UCSC:uc001hwd.3
CTD:6894 GeneCards:GC01M234527 HGNC:HGNC:11568 HPA:CAB020810
HPA:HPA024632 MIM:605052 neXtProt:NX_Q13395 PharmGKB:PA36333
HOGENOM:HOG000154511 HOVERGEN:HBG094026 InParanoid:Q13395
OMA:TVFRRDQ OrthoDB:EOG4S7JP4 PhylomeDB:Q13395 BindingDB:Q13395
ChEMBL:CHEMBL2807 ChiTaRS:TARBP1 EvolutionaryTrace:Q13395
GenomeRNAi:6894 NextBio:26945 Bgee:Q13395 CleanEx:HS_TARBP1
Genevestigator:Q13395 InterPro:IPR025806 Uniprot:Q13395
Length = 1621
Score = 468 (169.8 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 85/153 (55%), Positives = 118/153 (77%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
S + ++VASLID+ NL GL RTCEVF AS L + + DKQFQ +SV+AE+W+P+V
Sbjct: 1460 SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLV 1519
Query: 1763 EVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM 1822
EV + +L++KK EG++++G+EQTA S+ L QY FP+K++L+LG E+EGIP ++I
Sbjct: 1520 EVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQ 1579
Query: 1823 LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1580 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612
Score = 90 (36.7 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 1361 DKD-LARELYKKY---SAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPS 1416
DKD L + K+Y S HR K R WQ + +L +D + + + + + + NN S
Sbjct: 1147 DKDELVSKSKKRYYVNSLQHRVKNRVWQTLLVLFPRLDQNFLNGIIDRIFQAGFTNNQAS 1206
Query: 1417 VRQYLETFAITIYLKFPSLV 1436
++ ++E I I KFP +
Sbjct: 1207 IKYFIEWIIILILHKFPQFL 1226
Score = 65 (27.9 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 315 SLGTLERRDAFTVXXXXXXXXXXTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEG 374
SLG+ + V G + + R R D R FW ++ GL +
Sbjct: 220 SLGSGRVEEKLLVLSALAEKLLPEPGGDRA-RGAREAGPDARRCWRFWRTVQAGLGQADA 278
Query: 375 LVRKQSLHILKAVLQIRGE 393
L RK++ ++L+ +++ E
Sbjct: 279 LTRKRARYLLQRAVEVSAE 297
Score = 61 (26.5 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 37/184 (20%), Positives = 77/184 (41%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGEIF 507
WE +IL+ E LE H+++ ++ L ++++ +N G W+ PS
Sbjct: 329 WENYILIMETLEGNQIHVIKPVLP-KLNNLFEYAVSEEN--GC-------WLFHPS---- 374
Query: 508 DWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHH 567
W +++R F N + + FL + + E F++GP M+ L++ +
Sbjct: 375 -WHMCIYKRMFESENKILSKEGVIHFLELYETKILPFSPEFSE-FIIGPLMDALSESSLY 432
Query: 568 KDFGTKGVYSSRTIE-RAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAE 626
+ + S + + FL Y S L + +FL + + V ++ L++
Sbjct: 433 SRSPGQPIGSCSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIRKMTSRHWCAVPILFLSK 492
Query: 627 CIAS 630
+A+
Sbjct: 493 ALAN 496
Score = 53 (23.7 bits), Expect = 3.2e-44, Sum P(6) = 3.2e-44
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 582 ERAASFLHQYASFLDTRK----QIAFLSN-LASVAKQQSFGRVGLMALAECIASAACGVA 636
E +SFL ++ + +R I FLS LA+V + ++ G GL+AL + I C +
Sbjct: 464 EIKSSFLLKFIRKMTSRHWCAVPILFLSKALANVPRHKALGIDGLLALRDVIH---CTMI 520
Query: 637 AH---IENKAEC 645
H + A+C
Sbjct: 521 THQILLRGAAQC 532
Score = 49 (22.3 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 1193 PIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWL 1252
P+ + LSS+ + + PL+ VLEE + S ++ A ++ W+
Sbjct: 837 PLESFLSSLQLNQTLQKPHAEEQSSYAHPLE--CSSVLEESSSSQGWGKIVAQYIHDQWV 894
Query: 1253 TNPWIIKYY 1261
+++K Y
Sbjct: 895 CLSFLLKKY 903
Score = 45 (20.9 bits), Expect = 2.4e-40, Sum P(5) = 2.4e-40
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 927 FWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWC 979
FW + E NL +S+ L S L T + + ++ +A+ + WC
Sbjct: 1229 FWDCFSYGEENLKTSICTFLAVLSH--LDIITQNIPEKKLILKQALIVVLQWC 1279
Score = 43 (20.2 bits), Expect = 4.8e-42, Sum P(4) = 4.8e-42
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1126 LVESLENAGEGSLLPMLRSVR 1146
L E+ G L+P+LRS+R
Sbjct: 57 LPEAAREVAAGYLVPLLRSLR 77
Score = 42 (19.8 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 686 FNPNYRLRGYSFWQFKLWFPVCEKVL 711
FN N+ +R Y+ K + VC KVL
Sbjct: 1280 FNHNFSVRLYALVALKKLWTVC-KVL 1304
Score = 42 (19.8 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 19/92 (20%), Positives = 39/92 (42%)
Query: 257 LLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTLFSL 316
++ Q++ + + L ++L+ C + +F +Y L KK+W C+ L
Sbjct: 1256 IITQNIPEKKLILKQALIVVLQ----WCFNH-NFSVRLYALVA---LKKLWTVCKVL--- 1304
Query: 317 GTLERRDAFT-VXXXXXXXXXXTEGSENSDRS 347
++E DA T V G+ N+ ++
Sbjct: 1305 -SVEEFDALTPVIESSLHQVESMHGAGNAKKN 1335
Score = 41 (19.5 bits), Expect = 6.1e-45, Sum P(5) = 6.1e-45
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 812 ARVFFLVIKDEQDLAP-VLKFIQNGG----INIC----KQSNH-VRCISMKFLIL 856
A +F V + +Q L V FI+N G NI K+ +H VR ++KFL L
Sbjct: 1072 ACIFGTVFRRDQRLVQDVQTFIENLGHDCAANIVMENTKREDHYVRICAVKFLCL 1126
Score = 39 (18.8 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 27/134 (20%), Positives = 54/134 (40%)
Query: 124 LNQISESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSK 183
LN +S K++ W E +P F + SL VL + +E G + + G +
Sbjct: 602 LNAYVKSIVQEYVKSSAWETGENCFMPDWFEAKLVSLMVLLAVD---VE-GMKTQYSGKQ 657
Query: 184 GETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSLLENGCYAEKFA 243
N + + +L + + T+ ++ L D L+ L +T L + ++ +
Sbjct: 658 RTENVLRIFLDPLLDVLMKFS--TNAYMPLLKTDRCLQLLLKLLNTCRLKGSSAQDDEVS 715
Query: 244 ANLLWYLCNMTERL 257
L + + TE +
Sbjct: 716 TVLQNFFMSTTESI 729
Score = 39 (18.8 bits), Expect = 7.6e-40, Sum P(6) = 7.6e-40
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1493 HSLRGFTQLLVYQVLCKLFPTLD 1515
+SL+ + V+Q L LFP LD
Sbjct: 1162 NSLQHRVKNRVWQTLLVLFPRLD 1184
Score = 37 (18.1 bits), Expect = 4.9e-45, Sum P(6) = 4.9e-45
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 1115 SDDVVRYIFNDLVESLENAGEGSLLPMLRSVR 1146
+++V+R + L++ L + +P+L++ R
Sbjct: 659 TENVLRIFLDPLLDVLMKFSTNAYMPLLKTDR 690
Score = 37 (18.1 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 522 NPQVRYMIMQSFLGIEWKSYENC-------AKSVPESFLLGPFMEGL 561
N V+ ++ + W++ ENC AK V LL +EG+
Sbjct: 603 NAYVKSIVQEYVKSSAWETGENCFMPDWFEAKLVSLMVLLAVDVEGM 649
Score = 37 (18.1 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 544 CAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQ 590
CA VP FL + L + HK G G+ + R + HQ
Sbjct: 483 CA--VPILFL----SKALANVPRHKALGIDGLLALRDVIHCTMITHQ 523
>UNIPROTKB|J9P5E1 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001537
InterPro:IPR016024 Pfam:PF00588 SUPFAM:SSF48371 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 InterPro:IPR025806
GeneTree:ENSGT00390000003939 EMBL:AAEX03002692 PROSITE:PS51624
EMBL:AAEX03002691 Ensembl:ENSCAFT00000045343 Uniprot:J9P5E1
Length = 1415
Score = 469 (170.2 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 86/153 (56%), Positives = 118/153 (77%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
S + ++VASLID+ NL GL RTCEVF AS L + + DKQFQ +SV+AE+W+P+V
Sbjct: 1255 SISRLIVVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRDKQFQSLSVSAEQWLPLV 1314
Query: 1763 EVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM 1822
EV + FL++KK EG++V+G+EQTA S+ L QY FP++++L+LG E+EGIP ++I
Sbjct: 1315 EVKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQE 1374
Query: 1823 LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1375 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1407
Score = 84 (34.6 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 1361 DKD-LARELYKKY---SAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPS 1416
DKD L + +Y S HR K R WQ + +L D + + ++ + + + NN S
Sbjct: 942 DKDDLVSKCRTRYYVNSQQHRVKNRIWQTLLVLFPSFDQNFLNRIIDKIFQAGFINNQAS 1001
Query: 1417 VRQYLETFAITIYLKFPSLV 1436
++ ++E I I KFP +
Sbjct: 1002 IKYFIEWIIILILHKFPQFL 1021
Score = 61 (26.5 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 340 GSENSDRSDRGEEFDIRAVREFWEEIKRGLVD-EEGLVRKQSLHILKAVLQIRGE 393
G+ R+ R E D R FW ++ GL ++ L R+++ ++L+ +++ E
Sbjct: 38 GAGRGPRA-REEGPDARRCWRFWRTVQAGLAQAQDALTRRRARYLLQRAVEVSAE 91
Score = 53 (23.7 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 36/184 (19%), Positives = 77/184 (41%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGEIF 507
WE +IL+ E LE H+++ ++ L ++++ ++ G W+ PS
Sbjct: 123 WENYILIMETLEGNQIHVIKPVLP-KLKSLFEYAVSEED--GC-------WLFHPS---- 168
Query: 508 DWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDP-VH 566
W +++R F N + + FL + + E F++GP M+ L++ ++
Sbjct: 169 -WHMCIYKRMFESENKILTKEGVIHFLELYETKILPFSPEFSE-FIIGPLMDALSESSLY 226
Query: 567 HKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAE 626
+ G S + FL Y S L + +FL + + + ++ L++
Sbjct: 227 IRSPGQLIGSGSPLGLKLQKFLVTYVSLLPEEIKSSFLLKFIQKMTSRHWCGIPILFLSK 286
Query: 627 CIAS 630
+A+
Sbjct: 287 ALAN 290
Score = 50 (22.7 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1115 SDDVVRYIFNDLVESLENAGEGSLLPMLRSVR 1146
+ +V+R + L+ESL G + +P+L++ R
Sbjct: 454 TQNVLRIFLDPLLESLMKFGTNAYMPLLKTDR 485
Score = 50 (22.7 bits), Expect = 2.6e-44, Sum P(5) = 2.6e-44
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 582 ERAASFLHQYASFLDTRK----QIAFLSN-LASVAKQQSFGRVGLMALAECIASAACGVA 636
E +SFL ++ + +R I FLS LA+V + ++ G GL+AL + + C +
Sbjct: 258 EIKSSFLLKFIQKMTSRHWCGIPILFLSKALANVPRCKALGVDGLLALRDVLQ---CTMI 314
Query: 637 AH---IENKAEC 645
H + A+C
Sbjct: 315 THQILLRGAAQC 326
Score = 50 (22.7 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 274 PIILKAFVSL---CSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFT 326
PI+ +A + + C + +F +Y L KKIW C+TL +E DA T
Sbjct: 1061 PILKQALIIVLQWCFNH-NFSIRLYALVA---LKKIWSMCKTL----NMEEFDALT 1108
Score = 43 (20.2 bits), Expect = 4.0e-39, Sum P(5) = 4.0e-39
Identities = 21/88 (23%), Positives = 35/88 (39%)
Query: 927 FWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNA 986
FW + E NL +S+ L S L T + + + +A+ + WC N
Sbjct: 1024 FWDCFSYGEENLKTSICTFLSVLSH--LDIITQNIPEKKPILKQALIIVLQWC--FNHNF 1079
Query: 987 SIEF----AYDFMWNLFWKTIQSPTSDS 1010
SI A +W++ KT+ D+
Sbjct: 1080 SIRLYALVALKKIWSMC-KTLNMEEFDA 1106
Score = 38 (18.4 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 686 FNPNYRLRGYSFWQFKLWFPVCEKV-LEAAASLMCTFEVPL 725
FN N+ +R Y+ K + +C+ + +E +L E L
Sbjct: 1075 FNHNFSIRLYALVALKKIWSMCKTLNMEEFDALTSVIESSL 1115
Score = 37 (18.1 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 812 ARVFFLVIKDEQDLAP-VLKFIQNGG--------INICKQSNH-VRCISMKFLIL 856
A VF V + +Q L V +I+N G I K+ +H VR ++KFL L
Sbjct: 867 ACVFGTVFRRDQRLIQDVQTYIENLGHDCAANMVIENTKREDHYVRICAVKFLCL 921
>UNIPROTKB|F1PWU0 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 OMA:TVFRRDQ InterPro:IPR025806
GeneTree:ENSGT00390000003939 EMBL:AAEX03002692 PROSITE:PS51624
EMBL:AAEX03002691 Ensembl:ENSCAFT00000018299 Uniprot:F1PWU0
Length = 1435
Score = 469 (170.2 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 86/153 (56%), Positives = 118/153 (77%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
S + ++VASLID+ NL GL RTCEVF AS L + + DKQFQ +SV+AE+W+P+V
Sbjct: 1274 SISRLIVVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRDKQFQSLSVSAEQWLPLV 1333
Query: 1763 EVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM 1822
EV + FL++KK EG++V+G+EQTA S+ L QY FP++++L+LG E+EGIP ++I
Sbjct: 1334 EVKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQE 1393
Query: 1823 LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1394 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1426
Score = 84 (34.6 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 1361 DKD-LARELYKKY---SAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPS 1416
DKD L + +Y S HR K R WQ + +L D + + ++ + + + NN S
Sbjct: 961 DKDDLVSKCRTRYYVNSQQHRVKNRIWQTLLVLFPSFDQNFLNRIIDKIFQAGFINNQAS 1020
Query: 1417 VRQYLETFAITIYLKFPSLV 1436
++ ++E I I KFP +
Sbjct: 1021 IKYFIEWIIILILHKFPQFL 1040
Score = 61 (26.5 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 340 GSENSDRSDRGEEFDIRAVREFWEEIKRGLVD-EEGLVRKQSLHILKAVLQIRGE 393
G+ R+ R E D R FW ++ GL ++ L R+++ ++L+ +++ E
Sbjct: 53 GAGRGPRA-REEGPDARRCWRFWRTVQAGLAQAQDALTRRRARYLLQRAVEVSAE 106
Score = 53 (23.7 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 36/184 (19%), Positives = 77/184 (41%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGEIF 507
WE +IL+ E LE H+++ ++ L ++++ ++ G W+ PS
Sbjct: 138 WENYILIMETLEGNQIHVIKPVLP-KLKSLFEYAVSEED--GC-------WLFHPS---- 183
Query: 508 DWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDP-VH 566
W +++R F N + + FL + + E F++GP M+ L++ ++
Sbjct: 184 -WHMCIYKRMFESENKILTKEGVIHFLELYETKILPFSPEFSE-FIIGPLMDALSESSLY 241
Query: 567 HKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAE 626
+ G S + FL Y S L + +FL + + + ++ L++
Sbjct: 242 IRSPGQLIGSGSPLGLKLQKFLVTYVSLLPEEIKSSFLLKFIQKMTSRHWCGIPILFLSK 301
Query: 627 CIAS 630
+A+
Sbjct: 302 ALAN 305
Score = 50 (22.7 bits), Expect = 1.5e-44, Sum P(5) = 1.5e-44
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1115 SDDVVRYIFNDLVESLENAGEGSLLPMLRSVR 1146
+ +V+R + L+ESL G + +P+L++ R
Sbjct: 471 TQNVLRIFLDPLLESLMKFGTNAYMPLLKTDR 502
Score = 50 (22.7 bits), Expect = 2.9e-39, Sum P(2) = 2.9e-39
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 274 PIILKAFVSL---CSSEISFHGHIYILSRKCFFKKIWKCCRTLFSLGTLERRDAFT 326
PI+ +A + + C + +F +Y L KKIW C+TL +E DA T
Sbjct: 1080 PILKQALIIVLQWCFNH-NFSIRLYALVA---LKKIWSMCKTL----NMEEFDALT 1127
Score = 45 (20.9 bits), Expect = 9.6e-44, Sum P(5) = 9.6e-44
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 582 ERAASFLHQYASFLDTRK----QIAFLSN-LASVAKQQSFGRVGLMALA 625
E +SFL ++ + +R I FLS LA+V + ++ G GL+AL+
Sbjct: 273 EIKSSFLLKFIQKMTSRHWCGIPILFLSKALANVPRCKALGVDGLLALS 321
Score = 43 (20.2 bits), Expect = 6.4e-40, Sum P(4) = 6.4e-40
Identities = 21/88 (23%), Positives = 35/88 (39%)
Query: 927 FWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNA 986
FW + E NL +S+ L S L T + + + +A+ + WC N
Sbjct: 1043 FWDCFSYGEENLKTSICTFLSVLSH--LDIITQNIPEKKPILKQALIIVLQWC--FNHNF 1098
Query: 987 SIEF----AYDFMWNLFWKTIQSPTSDS 1010
SI A +W++ KT+ D+
Sbjct: 1099 SIRLYALVALKKIWSMC-KTLNMEEFDA 1125
Score = 38 (18.4 bits), Expect = 2.1e-39, Sum P(4) = 2.1e-39
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 686 FNPNYRLRGYSFWQFKLWFPVCEKV-LEAAASLMCTFEVPL 725
FN N+ +R Y+ K + +C+ + +E +L E L
Sbjct: 1094 FNHNFSIRLYALVALKKIWSMCKTLNMEEFDALTSVIESSL 1134
>UNIPROTKB|F1RGW6 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 PROSITE:PS51624
EMBL:CT737201 EMBL:CU329680 Ensembl:ENSSSCT00000011124
Uniprot:F1RGW6
Length = 1625
Score = 469 (170.2 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 85/153 (55%), Positives = 118/153 (77%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
S + V+VASLID+ NL GL RTCEVF AS L ++ + DKQFQ +SV+AE+W+P+V
Sbjct: 1464 SISRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQCIRDKQFQHLSVSAEQWLPLV 1523
Query: 1763 EVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM 1822
EV + +L+ KK EG++++G+EQTA S+ L Q+ FP+K++L+LG E+EGIP ++I
Sbjct: 1524 EVKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLLLLGNEREGIPANLIQQ 1583
Query: 1823 LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1584 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1616
Score = 81 (33.6 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 1361 DKD-LARELYKKY---SAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPS 1416
DKD L + +Y S HR K R WQ + +L D + + ++ + + + NN S
Sbjct: 1151 DKDELVSKSKTRYYVNSHQHRVKNRIWQTLLVLFPRFDQNFLNRIIDKIFQAGFINNQAS 1210
Query: 1417 VRQYLETFAITIYLKFPSLV 1436
++ ++E I I KFP +
Sbjct: 1211 IKYFIEWIIILILHKFPQFL 1230
Score = 64 (27.6 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 354 DIRAVREFWEEIKRGLV-DEEGLVRKQSLHILKAVLQIRGENQG 396
D R FW ++ GL E+ L RK++ ++L+ +++ E QG
Sbjct: 257 DARRCWRFWRTVQAGLAWAEDALTRKRARYLLQRAVEVSAE-QG 299
Score = 63 (27.2 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 37/184 (20%), Positives = 77/184 (41%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGEIF 507
WE +IL+ E LE H+++ ++ L ++++ +N G W+ PS
Sbjct: 329 WENYILIMETLEGNQIHVIKPVLP-KLNNLFEYAVSEEN--GC-------WLFHPS---- 374
Query: 508 DWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDPVHH 567
W +++R F N + + FL + + E F++GP M+ L++ +
Sbjct: 375 -WHLCIYKRMFESENKILTKEGVTHFLELYETRVLPFSPEFSE-FIIGPLMDALSESSLY 432
Query: 568 KDFGTKGVYSSRTIE-RAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAE 626
+ + S + + FL Y S L + +FL + + + ++ L++
Sbjct: 433 SRSPGQLIGSGSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIQKMTSRHWCAIPILFLSK 492
Query: 627 CIAS 630
+AS
Sbjct: 493 ALAS 496
Score = 54 (24.1 bits), Expect = 1.7e-43, Sum P(6) = 1.7e-43
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 582 ERAASFLHQYASFLDTRK----QIAFLSN-LASVAKQQSFGRVGLMALAECIASAACGVA 636
E +SFL ++ + +R I FLS LASV + ++ G GL+AL + + C +
Sbjct: 464 EIKSSFLLKFIQKMTSRHWCAIPILFLSKALASVPRCKALGVEGLLALRDVLQ---CTMI 520
Query: 637 AH---IENKAEC 645
H + A+C
Sbjct: 521 THQILLRGAAQC 532
Score = 46 (21.3 bits), Expect = 2.5e-40, Sum P(5) = 2.5e-40
Identities = 18/79 (22%), Positives = 29/79 (36%)
Query: 927 FWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNA 986
FW + E NL +S+ L S L T + + ++ +A+ + WC N
Sbjct: 1233 FWDCFSYGEENLKTSICTFLSVLSH--LDIITENIPEKKLILKQALIIVLHWC--FNHNF 1288
Query: 987 SIEFAYDFMWNLFWKTIQS 1005
SI W +S
Sbjct: 1289 SIRLYAMVALKKIWSMCKS 1307
Score = 44 (20.5 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 1115 SDDVVRYIFNDLVESLENAGEGSLLPMLRSVR 1146
+ +V+R + L+++L G + +P+L++ R
Sbjct: 660 TQNVLRIFLDPLLDALVKFGTNAYMPLLKTDR 691
Score = 44 (20.5 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 304 KKIWKCCRTLFSLGTLERRDAFT 326
KKIW C++L +E DA T
Sbjct: 1299 KKIWSMCKSLH----IEELDALT 1317
Score = 43 (20.2 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1182 LHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIR 1241
LH+ +R PI ++S +++ S+ H+ E G E L GT+ R +
Sbjct: 765 LHLKTGWKRGNPIWRVISPLINASI-----RHLQETGSGQ-----EPTL--GTQIQRAVS 812
Query: 1242 LAAL 1245
+AAL
Sbjct: 813 MAAL 816
Score = 43 (20.2 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 43/199 (21%), Positives = 71/199 (35%)
Query: 1294 VSLLAKSPVPELTEAFINTE--LYARVSVAVLFSKLADQTEIVGSAKECQDAXXXXXXXX 1351
+S L + + L E E L ++ AV + LA E + E Q
Sbjct: 781 ISPLINASIRHLQETGSGQEPTLGTQIQRAVSMAALAKVCEAIDQKSELQPDSLDAGPME 840
Query: 1352 XXXXXXVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYR 1411
+N + L K + R V+ W ++C S F + Q +
Sbjct: 841 RFLSSLQLN-----QTLQKPLTEEDGRYVQPWSVVCTGS-FSEESSSSQGWGKIVAQYIH 894
Query: 1412 NNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKA 1471
+ + L+ + I P+ +E L P+L M + L S + A IL + +
Sbjct: 895 DQWVCLSFLLKKYHTLI----PTSESEILEPVLPAVQMPVRTLQSA--LEALTILPSDQV 948
Query: 1472 VQFRHLEDLLPPIVPLLTS 1490
+ H +L P LLTS
Sbjct: 949 LPVFHCMKILVP--KLLTS 965
Score = 42 (19.8 bits), Expect = 8.4e-41, Sum P(4) = 8.4e-41
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 686 FNPNYRLRGYSFWQFKLWFPVCEKV-LEAAASLMCTFEVPLE 726
FN N+ +R Y+ K + +C+ + +E +L E L+
Sbjct: 1284 FNHNFSIRLYAMVALKKIWSMCKSLHIEELDALTSVIESSLD 1325
Score = 39 (18.8 bits), Expect = 3.8e-40, Sum P(6) = 3.8e-40
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1488 LTSHHHSLRGFTQLLVYQVLCKLFPTLD 1515
+ SH H ++ ++Q L LFP D
Sbjct: 1165 VNSHQHRVKN----RIWQTLLVLFPRFD 1188
Score = 38 (18.4 bits), Expect = 6.5e-44, Sum P(5) = 6.5e-44
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 812 ARVFFLVIKDEQDLAPVLK-FIQNGG--------INICKQSNH-VRCISMKFLIL 856
A VF V + +Q L ++ F++N G I K+ +H VR ++KFL L
Sbjct: 1076 ACVFGTVFRRDQRLIQDIQTFVENLGHDCAANVVIENTKREDHYVRICAVKFLCL 1130
Score = 38 (18.4 bits), Expect = 7.2e-42, Sum P(6) = 7.2e-42
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 522 NPQVRYMIMQSFLGIEWKSYENC-------AKSVPESFLLGPFMEGLNDPVHHK 568
N V+ +I + W+ ENC AK V LL +EG+ K
Sbjct: 604 NAYVKNLIHEYIKSPAWERGENCCMPDWFEAKLVAMMVLLAVDVEGMKSQYSEK 657
Score = 37 (18.1 bits), Expect = 2.8e-40, Sum P(4) = 2.8e-40
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 1510 LFPTLD----FGTSQKMPLEKS--CFEDLKSYL 1536
L P LD FGT+ MPL K+ C + L L
Sbjct: 668 LDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLL 700
>UNIPROTKB|F1N6T6 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 EMBL:DAAA02061448
EMBL:DAAA02061449 EMBL:DAAA02061450 IPI:IPI00705077
Ensembl:ENSBTAT00000005936 PROSITE:PS51624 Uniprot:F1N6T6
Length = 1313
Score = 462 (167.7 bits), Expect = 6.9e-44, Sum P(4) = 6.9e-44
Identities = 87/170 (51%), Positives = 125/170 (73%)
Query: 1686 FDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHD 1745
FD L + A + + S + ++VASLID+ NL GL RTCEVF A+ L + + D
Sbjct: 1136 FDLELVFQDRAAK-LGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRD 1194
Query: 1746 KQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTV 1805
KQFQ +SV+AE+W+P+VEV + +L++KK EG++++G+EQTA S+ L +Y FP+K++
Sbjct: 1195 KQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSL 1254
Query: 1806 LVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
L+LG E+EGIP ++I LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1255 LLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1304
Score = 85 (35.0 bits), Expect = 6.9e-44, Sum P(4) = 6.9e-44
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1365 ARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETF 1424
+R Y S HR K R WQ++ +L D + + ++ + + + NN S++ ++E
Sbjct: 847 SRTRYYVNSQQHRVKNRIWQILLVLFPKFDQNFLNKIIDKIFQAGFINNQASIKYFIEWI 906
Query: 1425 AITIYLKFPSLV 1436
I I KFP +
Sbjct: 907 IILILHKFPQFL 918
Score = 71 (30.1 bits), Expect = 6.9e-44, Sum P(4) = 6.9e-44
Identities = 40/185 (21%), Positives = 81/185 (43%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGEIF 507
WE +IL+ E LE H+++ ++ L ++++ +N G W+ PS
Sbjct: 20 WENYILIMETLEGNQIHVIKPVLP-KLNGLFEYAVSEEN--GC-------WLFHPS---- 65
Query: 508 DWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDP-VH 566
W +++R F N + + FL + + + E F++GP M+ L++ ++
Sbjct: 66 -WHLCIYKRMFESENKILTKEGVTHFLELYETRILPFSPEISE-FIIGPLMDALSESSLY 123
Query: 567 HKDFGTK-GVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALA 625
+ G G S + + FL Y SFL + +FL + + V ++ L+
Sbjct: 124 SRSPGQLIGSVSPLGL-KLQKFLVTYISFLPEEIKSSFLLKFIQKMTSRHWCAVPILFLS 182
Query: 626 ECIAS 630
+ +A+
Sbjct: 183 KALAN 187
Score = 55 (24.4 bits), Expect = 1.8e-39, Sum P(5) = 1.8e-39
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 927 FWSNIAMEETNLPSSVIGKLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNA 986
FW+ + E NL +S+ L S L T T++ + ++ +A+ + WC N
Sbjct: 921 FWNCFSYGEENLKTSICTFLSVLSH--LDVITETILEKKLILKQALTIVLQWC--FNHNF 976
Query: 987 SI 988
SI
Sbjct: 977 SI 978
Score = 48 (22.0 bits), Expect = 1.7e-41, Sum P(4) = 1.7e-41
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 582 ERAASFLHQYASFLDTRK----QIAFLSN-LASVAKQQSFGRVGLMALA 625
E +SFL ++ + +R I FLS LA+V + ++ G GL+AL+
Sbjct: 155 EIKSSFLLKFIQKMTSRHWCAVPILFLSKALANVPRCKALGMEGLLALS 203
Score = 44 (20.5 bits), Expect = 6.9e-44, Sum P(4) = 6.9e-44
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 1115 SDDVVRYIFNDLVESLENAGEGSLLPMLRSVR 1146
+ +V+R + L+++L G + +P+L++ R
Sbjct: 353 TQNVLRIFLDPLLDALVKFGTNAYMPLLKTDR 384
Score = 44 (20.5 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 686 FNPNYRLRGYSFWQFKLWFPVCEKV-LEAAASLMCTFEVPL 725
FN N+ +R Y+ K + +C+ + +E A+L E L
Sbjct: 972 FNHNFSIRLYALVALKKIWSMCKGLHIEELAALTSVIESSL 1012
Score = 39 (18.8 bits), Expect = 1.6e-39, Sum P(3) = 1.6e-39
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1533 KSYLAKNSDCTRLRASMSGYLDAYDPNL 1560
+SY ++S C+ + L+AY NL
Sbjct: 276 ESYFKQSSSCSSTGLHETSSLNAYVRNL 303
Score = 39 (18.8 bits), Expect = 1.8e-39, Sum P(5) = 1.8e-39
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1186 CNKRRVAPIAALLSSVLHYSVFSEEEMH 1213
C + +AAL +SV+ S+ E MH
Sbjct: 993 CKGLHIEELAAL-TSVIESSLSQVENMH 1019
Score = 38 (18.4 bits), Expect = 4.2e-36, Sum P(3) = 4.2e-36
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 275 IILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCCRTL 313
+ILK +++ H L KKIW C+ L
Sbjct: 958 LILKQALTIVLQWCFNHNFSIRLYALVALKKIWSMCKGL 996
Score = 37 (18.1 bits), Expect = 3.7e-43, Sum P(4) = 3.7e-43
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 838 NICKQSNHVRCISMKFLILTLNFLQEIQIMQERYSECGIRIRTKSEIDS 886
N ++ ++VR ++KFL L ++ E + I++ K E+ S
Sbjct: 800 NTKREDHYVRICAVKFLCLLDGSNMSHKLFME---DLAIKLLDKDELVS 845
Score = 37 (18.1 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 1510 LFPTLD----FGTSQKMPLEKS--CFEDLKSYL 1536
L P LD FGT+ MPL K+ C + L L
Sbjct: 361 LDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLL 393
>UNIPROTKB|F1NP06 [details] [associations]
symbol:TARBP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 OMA:TVFRRDQ
InterPro:IPR025806 GeneTree:ENSGT00390000003939 PROSITE:PS51624
EMBL:AADN02051900 EMBL:AADN02051901 EMBL:AADN02051902
IPI:IPI00583004 Ensembl:ENSGALT00000017913 Uniprot:F1NP06
Length = 1311
Score = 465 (168.7 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 87/169 (51%), Positives = 124/169 (73%)
Query: 1687 DQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDK 1746
+ VLQ R+ + S + ++VASLID+ NL GL RT E+F AS L + + + DK
Sbjct: 1138 EMVLQDRAAKLGK---SNSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYVQDK 1194
Query: 1747 QFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVL 1806
QFQ +SV+AE+W+P+VEV + + +L++KK EG++ +G+EQTA S L +Y FP+K++L
Sbjct: 1195 QFQHLSVSAEQWLPLVEVKPSQLVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEKSLL 1254
Query: 1807 VLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
+LG E EGIP ++IH LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1255 LLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1303
Score = 75 (31.5 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 28/157 (17%), Positives = 71/157 (45%)
Query: 1365 ARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETF 1424
+R Y S HR K R WQ + +L +D + + + + + NN SV+ ++E
Sbjct: 846 SRTRYYANSLQHRIKNRVWQTLLVLLPKLDQKFLCGILDKVFQAGFGNNQASVKYFIEWI 905
Query: 1425 AITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAAN---VILHASKAVQFRHLEDLL 1481
I K+P + + D + ++ +++ + ++ ++ + S+ L+ L
Sbjct: 906 VILSLHKYPQFLNKFWDCFCYDEEKLKTSICTFLSVLSHFDTILQNTSEKKPI--LKKAL 963
Query: 1482 PPIVPLLTSHHHSLRGFTQLLVYQV--LCKLFPTLDF 1516
++ +H+ S+R + + + ++ +C++ +F
Sbjct: 964 LVVLQWCFNHNFSVRLYALVALKKIWAMCRMLDVEEF 1000
Score = 66 (28.3 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 43/187 (22%), Positives = 78/187 (41%)
Query: 447 QQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWI-KPSGE 505
Q WE +IL+ E LEE H+++ ++ L + ++ G G W+ PS
Sbjct: 16 QFWETYILIMETLEENQIHVIKPVLP-KLNSLYELAIS-----GKEGC----WLFHPS-- 63
Query: 506 IFDWLSVLWERGFCHGNPQVRYMIMQSFLGI-EWKSYENCAKSVPESFLLGPFMEGLNDP 564
W +++R F N + + FL + E K N + E F++GP M+ L++
Sbjct: 64 ---WHMCIYKRMFESENKTLTKEGVLHFLELYETKHLPN-SLGFSE-FVIGPLMDALSES 118
Query: 565 -VHHKDFGT-KGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLM 622
++ + G G + R FL Y L ++ FL + + V ++
Sbjct: 119 SLYSRTPGQLMGACPPLGM-RLQKFLTTYVMLLPEEEKGGFLLKFIQKMTNRHWCAVPIL 177
Query: 623 ALAECIA 629
L+ +A
Sbjct: 178 FLSMALA 184
Score = 49 (22.3 bits), Expect = 8.2e-38, Sum P(4) = 8.2e-38
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 237 CY-AEKFAANLLWYLCNMTE-RLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHI 294
CY EK ++ +L ++ +LQ+ + + L ++L+ C + +F +
Sbjct: 925 CYDEEKLKTSICTFLSVLSHFDTILQNTSEKKPILKKALLVVLQ----WCFNH-NFSVRL 979
Query: 295 YILSRKCFFKKIWKCCRTL 313
Y L KKIW CR L
Sbjct: 980 YALVA---LKKIWAMCRML 995
Score = 45 (20.9 bits), Expect = 2.7e-40, Sum P(4) = 2.7e-40
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 197 LSLSRSITLPTSCHILTLVMDSALRNLQAAPSTDSL 232
L LS S LPT + ++ + ++++RN + ST+ L
Sbjct: 456 LQLS-SKKLPTIRNFISSLTNASIRNFRETNSTEEL 490
Score = 44 (20.5 bits), Expect = 8.2e-38, Sum P(4) = 8.2e-38
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 475 ITLLLQFSLPH-DNLPGSTGRAHQNWIKPSGEIF 507
+T +++ SL +N+ G TG A +NW + F
Sbjct: 1003 LTPVIESSLQQVENMHG-TGNARRNWQRIQDHFF 1035
Score = 42 (19.8 bits), Expect = 1.8e-42, Sum P(4) = 1.8e-42
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 841 KQSNHVRCISMKFL-------ILTLNFLQEIQIMQERYSECGIRIRTKSEIDSLK 888
+ ++VR ++KFL IL +F+++I I E R RT+ +SL+
Sbjct: 802 RDDHYVRICAIKFLCLLDGSNILHKSFMEDIVIKLLEKDELVSRSRTRYYANSLQ 856
Score = 40 (19.1 bits), Expect = 3.0e-42, Sum P(4) = 3.0e-42
Identities = 14/62 (22%), Positives = 31/62 (50%)
Query: 1091 LCLESLLSLPYCGLENGANCSYFFSDDV---VRYIFNDLVESLENAGEGSLLPMLRSVRL 1147
LC+E+ L + + + +N F ++ VR+IF++ V + + +G ++ + L
Sbjct: 652 LCIEAF-DLAWKIISSLSNTQLIFWSNLKAFVRFIFDNEVLAAAASAKGQAYAKIKEIIL 710
Query: 1148 TL 1149
L
Sbjct: 711 KL 712
Score = 39 (18.8 bits), Expect = 1.8e-39, Sum P(4) = 1.8e-39
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 807 KAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRC-ISMKFLILTLNFLQEIQ 865
+ +++ + +++ +E+ +LKFIQ K +N C + + FL + L ++ +
Sbjct: 138 RLQKFLTTYVMLLPEEEKGGFLLKFIQ-------KMTNRHWCAVPILFLSMALAYVPTCK 190
Query: 866 IM 867
++
Sbjct: 191 VL 192
>ZFIN|ZDB-GENE-090313-346 [details] [associations]
symbol:tarbp1 "TAR (HIV-1) RNA binding protein 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 InterPro:IPR016024 Pfam:PF00588
ZFIN:ZDB-GENE-090313-346 SUPFAM:SSF48371 GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 InterPro:IPR025806
GeneTree:ENSGT00390000003939 PROSITE:PS51624 EMBL:BX324188
IPI:IPI00961853 Ensembl:ENSDART00000113259 Uniprot:F1R356
Length = 1578
Score = 445 (161.7 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 87/175 (49%), Positives = 124/175 (70%)
Query: 1680 EKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD 1739
E+E EL + Q R+L + + +S ++VASLID+ NL GL RTCE+F A L +
Sbjct: 1403 EQEPEL---MAQQRALRLGKLTSS---LLVVASLIDKPTNLGGLCRTCEIFGAKALVLDS 1456
Query: 1740 ANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYM 1799
++DKQFQ +SV++E W+P++EV + FL+ KK EG+ V+G+EQT+NS L Y
Sbjct: 1457 LRHVNDKQFQALSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYT 1516
Query: 1800 FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
FP+K++L+LG E+EGIP +++ +LD C+EIPQ GV RSLNVHVS A+ +WEYTRQ
Sbjct: 1517 FPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 1571
Score = 93 (37.8 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 38/153 (24%), Positives = 76/153 (49%)
Query: 1361 DKDLARELYKKYS-AI-HRRKVRAWQMICILSRFVDNDIVGQ-VTHFLHISLYRNNLPSV 1417
D ++++ + YS +I HR K RAWQ + +L + ++ V + V + + + +N SV
Sbjct: 1110 DAEISKSKVRYYSNSIQHRVKSRAWQTLLLLLHQLRDEFVSECVLSRVCEAGFSSNQASV 1169
Query: 1418 RQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSY--VFIAANVILH--ASKAVQ 1473
+ +E I + + PS + D++ ++ ++ V + NV+L A KAVQ
Sbjct: 1170 KYLIEWTLILVLQRSPSHIQSLWNCFSLDHEKTKTSICTFLSVLVHLNVLLPKLADKAVQ 1229
Query: 1474 FRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQV 1506
+R ++ + SH+ S+R + L + +V
Sbjct: 1230 WRRAVEVS---LQWCFSHNFSVRLYALLALKRV 1259
Score = 58 (25.5 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 28/121 (23%), Positives = 54/121 (44%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFD 508
WE + L+ E LEE H++ N +I +L++ + ++ G PS
Sbjct: 311 WEDYALVLETLEENQIHVIRPVLN-RIDMLVETTTT--DIQGGL-------FSPS----- 355
Query: 509 WLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESFLLGPFMEGLNDP-VHH 567
WL +++R F N V + L ++ A + + F++GP M+ L + ++H
Sbjct: 356 WLLCVYQRMFHSENKAVMKEGVHHLLQLKALHQPAFALAFSQ-FVIGPLMDVLAESSLYH 414
Query: 568 K 568
+
Sbjct: 415 R 415
Score = 50 (22.7 bits), Expect = 1.3e-41, Sum P(4) = 1.3e-41
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 354 DIRAVREFWEEIKRGLVDEEGLVRKQSLHIL 384
D R + F+ ++ GL + + RK++L++L
Sbjct: 240 DPRRSQRFFRAVQDGLTHRDSVTRKRALYLL 270
Score = 47 (21.6 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 356 RAVREFWEEIKRGLVDEEGLVRKQSLHILKAVL 388
+ +REFWE+ LV E + + +H+++ VL
Sbjct: 305 KLLREFWEDY--ALVLET--LEENQIHVIRPVL 333
Score = 39 (18.8 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1304 ELTEAFINTELYARVSVAVLFSKLADQ 1330
E T+ I T L V + VL KLAD+
Sbjct: 1200 EKTKTSICTFLSVLVHLNVLLPKLADK 1226
Score = 37 (18.1 bits), Expect = 7.1e-34, Sum P(4) = 7.1e-34
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 436 YSTDLALKQGQQQWEAFILL-YEMLEEYSTHLV 467
YS + + + W+ +LL +++ +E+ + V
Sbjct: 1121 YSNSIQHRVKSRAWQTLLLLLHQLRDEFVSECV 1153
>ZFIN|ZDB-GENE-090313-347 [details] [associations]
symbol:si:dkey-85a20.4 "si:dkey-85a20.4"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001537 Pfam:PF00588 ZFIN:ZDB-GENE-090313-347
GO:GO:0003723 GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0566 OrthoDB:EOG4S7JP4 GeneTree:ENSGT00390000003939
EMBL:BX324188 IPI:IPI00929029 UniGene:Dr.158172
Ensembl:ENSDART00000135999 Uniprot:B8A4Z4
Length = 191
Score = 445 (161.7 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 87/175 (49%), Positives = 124/175 (70%)
Query: 1680 EKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD 1739
E+E EL + Q R+L + + +S ++VASLID+ NL GL RTCE+F A L +
Sbjct: 16 EQEPEL---MAQQRALRLGKLTSS---LLVVASLIDKPTNLGGLCRTCEIFGAKALVLDS 69
Query: 1740 ANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYM 1799
++DKQFQ +SV++E W+P++EV + FL+ KK EG+ V+G+EQT+NS L Y
Sbjct: 70 LRHVNDKQFQALSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYT 129
Query: 1800 FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
FP+K++L+LG E+EGIP +++ +LD C+EIPQ GV RSLNVHVS A+ +WEYTRQ
Sbjct: 130 FPEKSLLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 184
>CGD|CAL0001648 [details] [associations]
symbol:orf19.5038 species:5476 "Candida albicans" [GO:0016423
"tRNA (guanine) methyltransferase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030488 "tRNA
methylation" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
CGD:CAL0001648 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 KO:K15333 EMBL:AACQ01000259
EMBL:AACQ01000258 RefSeq:XP_710540.1 RefSeq:XP_710551.1
ProteinModelPortal:Q59LD8 STRING:Q59LD8 GeneID:3647846
GeneID:3647851 KEGG:cal:CaO19.12505 KEGG:cal:CaO19.5038
Uniprot:Q59LD8
Length = 1440
Score = 395 (144.1 bits), Expect = 9.6e-32, Sum P(4) = 9.6e-32
Identities = 90/270 (33%), Positives = 159/270 (58%)
Query: 1589 LNFLNDVREDLRYSMAKDVVTIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQ 1648
L+F+ D +Y +++D + + IG+DP +++ +EE K L+ +
Sbjct: 1178 LDFIKKENFD-KY-LSQDQINLLKYD--IGQDPQLW-MINEEKEEEEEEDYDKKRKLNLK 1232
Query: 1649 KKITLPKHENQDN--SSSSFFGNRE-AYKQLLEIEKEDELFDQVLQARSLAMETIRASRQ 1705
K I P N SSSSF + A+ +++ D + D V + ++ R
Sbjct: 1233 KPIVTPIKPVDSNEVSSSSFLQTKSGAWNTIMDA---DAVVDDVNNTNN-SVRGSEIPRS 1288
Query: 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVP 1765
+ ++V+SL+D+ PNL G+ R C+V A L + D + + F+ ++VTA++W+P++EV
Sbjct: 1289 ELIVVSSLVDKPPNLGGICRLCDVLGAGLLTLHDIEVKNHINFKTVAVTADQWMPMIEVK 1348
Query: 1766 VNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYM-FPKKTVLVLGREKEGIPVDIIHMLD 1824
+ +IK +L KK EG++++GLEQT SI L+ + FPKK+++++G+E+EGIP D++ LD
Sbjct: 1349 MENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIPGDLLAELD 1408
Query: 1825 ACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
C+EI Q+G+VRS+N+ + AI + Y+ Q
Sbjct: 1409 FCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1438
Score = 60 (26.2 bits), Expect = 9.6e-32, Sum P(4) = 9.6e-32
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 1415 PSVRQYLETFAITIYLKFPSLVAEQLV-PILRDYD-MRPQALSSYVFIAANVILHASKAV 1472
P VR Y+E + I + L ++L+ + + + ++P ++SY+ I I S
Sbjct: 1018 PMVRSYIE-WIIALKLSDNGNYVDKLLNELFQKINILKPSVVTSYLKILFLFIQQQSTTK 1076
Query: 1473 QFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQV 1506
+ + L LL ++P T +R F+ L+ +
Sbjct: 1077 ECQLLTKLLYTVIPGCTVSRKMIRHFSLSLIISI 1110
Score = 57 (25.1 bits), Expect = 9.6e-32, Sum P(4) = 9.6e-32
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 360 EFWEEIKRGLVDEEGLVRKQSLHILKAVL-QIRGENQGHSGVSDMRSQGK--NSTARGMT 416
++W+ +++GL+ + RK SL IL+ L I + V ++ + K N +R MT
Sbjct: 250 DYWKSLQQGLISDSHEYRKFSLSILQVSLTSINTDLNNDYIVWEITDKQKYLNEWSRYMT 309
Query: 417 KRDLWAV 423
++ A+
Sbjct: 310 LYEIIAI 316
Score = 49 (22.3 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 128 SESFFDVVTKTNTWINLEKTLVPCIFSSVGFSLGVLQ 164
+++F ++ K++ W +L++ L+ FSL +LQ
Sbjct: 239 NDTFQTIIQKSDYWKSLQQGLISDSHEYRKFSLSILQ 275
Score = 47 (21.6 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 173 WGSCSPFQGSKGETNA-SDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTD- 230
WG C G + + +LS+ S L H L ++ + L NL A + +
Sbjct: 344 WGWCLLSTGLQATLESVRKFTLRLLLSIP-SENLYLIKHGLPILEKAFLPNLMNASNLNV 402
Query: 231 SLLENGCYAEKFAANLLWYLCNMTERL 257
+ N ++A L Y+CNM + L
Sbjct: 403 KITSNDKLDCEYAYQLKNYICNMVKNL 429
Score = 47 (21.6 bits), Expect = 4.4e-31, Sum P(5) = 4.4e-31
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 448 QWEAFILLYEMLE-EYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTG 493
+W ++ LYE++ + S + EA N IT L+ P +P S G
Sbjct: 303 EWSRYMTLYEIIAIDTSLNQAEAGQN-DITGLIS---PTSLIPSSWG 345
Score = 44 (20.5 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 30/144 (20%), Positives = 59/144 (40%)
Query: 354 DIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGEN----QGHSGVSDM-RSQGK 408
D + + WE IK + E + ++ L+ + QI + + + + D R
Sbjct: 644 DNEDISKLWETIKNEIQSNEYRILEECLYKFRLFNQIYKNSTFQFENITTIIDFHRIMLN 703
Query: 409 NSTARGMTKRDLWAVKEAKSLGVGKLCYST-DLALKQGQQQWEAFILLYEMLEEYSTHLV 467
NS T R + +K+ + LG Y+T +L ++ A I + +L+ + +V
Sbjct: 704 NSYETSKTSRFFYKLKD-EILGE---YYTTLNLTFEKTTTNTNASINISAILDVLNPGIV 759
Query: 468 EAAWNHQITLLLQFSLPHDNLPGS 491
+ N+ + L+ L P S
Sbjct: 760 QNKANYNMVNLVYHYLEITETPES 783
Score = 40 (19.1 bits), Expect = 1.3e-30, Sum P(4) = 1.3e-30
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 58 IKEGQKLDSDQCNYIASMVGALCHLLKTL 86
I KLD C Y + +C+++K L
Sbjct: 404 ITSNDKLD---CEYAYQLKNYICNMVKNL 429
Score = 39 (18.8 bits), Expect = 6.7e-30, Sum P(4) = 6.7e-30
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 722 EVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQ 761
E LEI+L F+ +P+ D + R+ + L G K+Q
Sbjct: 71 ENELEIILKFVYKIPQLKQD----ILERIIQLLYGYIKEQ 106
Score = 38 (18.4 bits), Expect = 9.6e-32, Sum P(4) = 9.6e-32
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 825 LAPVLKFIQNGGINICKQSNH 845
L+ + KFI++ G + K+ NH
Sbjct: 523 LSTLNKFIKHNGFELLKE-NH 542
Score = 37 (18.1 bits), Expect = 8.5e-30, Sum P(4) = 8.5e-30
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 841 KQSNHVRCISMKFLILTLNFLQEI 864
KQ + + I+ LIL FLQ +
Sbjct: 126 KQDSTIDLITSDELILLFQFLQSL 149
>FB|FBgn0038953 [details] [associations]
symbol:CG18596 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
EMBL:AE014297 GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0566 GeneTree:ENSGT00390000003939
EMBL:AY069719 RefSeq:NP_651031.1 UniGene:Dm.1987 SMR:Q9VD22
MINT:MINT-1669476 EnsemblMetazoa:FBtr0084216 GeneID:42622
KEGG:dme:Dmel_CG18596 UCSC:CG18596-RA FlyBase:FBgn0038953
InParanoid:Q9VD22 OMA:MENLEEQ OrthoDB:EOG4F7M1M GenomeRNAi:42622
NextBio:829741 Uniprot:Q9VD22
Length = 1136
Score = 370 (135.3 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 72/149 (48%), Positives = 103/149 (69%)
Query: 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVP 1765
+ ++VASLID++PNL GLARTCEV + L + + F +S+TAEK + I+EV
Sbjct: 985 ELIVVASLIDKLPNLGGLARTCEVLGVNTLILGLKSQAEKSDFTNLSMTAEKTLNILEVN 1044
Query: 1766 VNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDA 1825
S+ FL K+ EG+ ++G EQTA+S + FPKK++L+LG EK GIP ++I LD
Sbjct: 1045 PESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDY 1104
Query: 1826 CIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
+EIPQ G+VRSLNVHV+G++ +WEY +Q
Sbjct: 1105 AVEIPQYGLVRSLNVHVAGSLFIWEYCKQ 1133
Score = 67 (28.6 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 441 ALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNL 488
AL+ + QW A++ + E LEE +HLV + TLL + L +NL
Sbjct: 200 ALQCSEVQWSAYVGIMENLEEQQSHLVLPTLS---TLLPRMGLMSNNL 244
Score = 51 (23.0 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 27/132 (20%), Positives = 61/132 (46%)
Query: 1376 HRRKVRAWQMICILS-RFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPS 1434
HR K+R + + LS R+ +D + + L ++ P++ ++ + ++ L
Sbjct: 728 HRMKMRIGKALLDLSDRWKWSDNLWEAV------LCPSDQPNI-SFMYEYLVSKMLPSID 780
Query: 1435 LVAEQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHS 1494
L+ EQL +L ++P S V + L +++Q L ++ ++PL +
Sbjct: 781 LLLEQL-KLLAT--LKPSQQISLVSVVHIYCLTRWESIQHEQLVEVFAVLLPLTMGANFQ 837
Query: 1495 LRGFTQLLVYQV 1506
R QL+++++
Sbjct: 838 TRLLAQLVLHRI 849
Score = 43 (20.2 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 240 EKFAANL-LWYLCNMTERLLLQSVEHRSCA 268
E FA L L N RLL Q V HR C+
Sbjct: 822 EVFAVLLPLTMGANFQTRLLAQLVLHRICS 851
Score = 41 (19.5 bits), Expect = 9.8e-30, Sum P(3) = 9.8e-30
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 614 QSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPE 652
++F R + + E +A++ + +++ K GD +PE
Sbjct: 934 ETFKRKQSVLIPE-LATSLAALNGNVQRKMNPVGDIYPE 971
Score = 38 (18.4 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 905 LANLFPNVLEELVCFSNLSCSIFWSNIAMEE 935
LA L P+ LV ++ C W +I E+
Sbjct: 789 LATLKPSQQISLVSVVHIYCLTRWESIQHEQ 819
Score = 37 (18.1 bits), Expect = 9.9e-30, Sum P(4) = 9.9e-30
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 1117 DVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLF 1152
+ + Y+ L ++++ G L + S+ T+D +
Sbjct: 380 EAINYVIFSLSATIDSLSLGDYLLFMESLYNTIDRY 415
Score = 37 (18.1 bits), Expect = 3.0e-26, Sum P(4) = 3.0e-26
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 106 WKSFIPLMKMRHAFEPEVLNQISESFFDVVTK-TNTWINLEK 146
W +P+ R PE S +D+ T + ++LE+
Sbjct: 473 WWRLLPIFLHRELDHPEQYLDFYRSVYDLDTSFLESGVSLEQ 514
>SGD|S000002270 [details] [associations]
symbol:TRM3 "2'-O-ribose methyltransferase" species:4932
"Saccharomyces cerevisiae" [GO:0016740 "transferase activity"
evidence=IEA] [GO:0032259 "methylation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016423 "tRNA (guanine)
methyltransferase activity" evidence=IDA] [GO:0030488 "tRNA
methylation" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0009020 "tRNA
(guanosine-2'-O-)-methyltransferase activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR001537
Pfam:PF00588 SGD:S000002270 GO:GO:0005737 EMBL:BK006938
GO:GO:0003723 EMBL:X95644 eggNOG:COG0566 EMBL:Z74159 GO:GO:0016423
EMBL:Z74160 PIR:S67655 RefSeq:NP_010171.1 ProteinModelPortal:Q07527
SMR:Q07527 DIP:DIP-2598N IntAct:Q07527 MINT:MINT-657104
STRING:Q07527 PaxDb:Q07527 PeptideAtlas:Q07527 EnsemblFungi:YDL112W
GeneID:851446 KEGG:sce:YDL112W CYGD:YDL112w
GeneTree:ENSGT00390000003939 HOGENOM:HOG000141850 KO:K15333
OMA:NIQTATA OrthoDB:EOG46HKJX NextBio:968696 Genevestigator:Q07527
GO:GO:0009020 InterPro:IPR025759 Uniprot:Q07527
Length = 1436
Score = 347 (127.2 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 62/153 (40%), Positives = 104/153 (67%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
+R + ++V+SL+D+ PNL G+ R C+V L + D + + QF+ ++VTA++W+P+
Sbjct: 1282 TRSELIVVSSLVDKPPNLGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTADRWMPME 1341
Query: 1763 EVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQ-YMFPKKTVLVLGREKEGIPVDIIH 1821
EV ++ I F++ KK EG++++GLEQT S+ LD + FPKK++++LG E GIP ++
Sbjct: 1342 EVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPGTLLS 1401
Query: 1822 MLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
LD C+EI Q GV+RS+N+ + A+ + YT Q
Sbjct: 1402 ELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQ 1434
Score = 62 (26.9 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 64/300 (21%), Positives = 116/300 (38%)
Query: 1378 RKVRAWQMICILSRFVDNDIVGQVTHFLHI--SLYRNNLPSVRQYLETFA---ITIYLKF 1432
+++ WQ++ +LS N+ T + I S+ + P VR Y E F + Y K
Sbjct: 1006 QRLLQWQLL-LLSLLTTNEKKLSETSMIRILKSIEDESSPLVRVYKEWFISSKVVDYYKT 1064
Query: 1433 --PSLVAEQLVPILRDYDMRPQALSS--YVFIAANVILHASKAVQFRHLED-LLPPIVPL 1487
P + L +L D+ +S+ F+ + + K F L D + +VP
Sbjct: 1065 GNPKFAEDYLFSLLEDHSKPVFVVSAEKICFMVLKDLRNDEKKYGFTQLLDRFICTLVPN 1124
Query: 1488 LTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRA 1547
S+ +R F+ L+ L+PT S ++ E+L S K + RA
Sbjct: 1125 AASNKPLVRHFSNSLIIS----LWPTFKAYLSDHTL--RNIIENLYSNAKKTQIFGQYRA 1178
Query: 1548 SMSGYLDAYDPNLSITPAVIFVNRDKELEFEC--VPTSLMEQVLNFLN--DVREDLR--Y 1601
+ D +T V + K + +C + S+ E+ L + + D R +
Sbjct: 1179 GDANIWDLKGDR-KLTNMFGGVLK-KVTDHDCPYISESVFEKYLQEKDIVPIGTDERSLW 1236
Query: 1602 SMAKDVVT--IKNESLKIGEDP-----DCAETLSDLDKEESFSQLPKDSLLDFQKKITLP 1654
+D T + N ++ P ET+ DLD ++S + + L+ + P
Sbjct: 1237 LDKRDTNTESVNNANISCDTSPLQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKP 1296
Score = 54 (24.1 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1406 HISLYRN--NLPSVRQYLETFAITIYLKF-----PSLVAEQLV 1441
H+SL R + + + LET TIYLKF PS+ A +L+
Sbjct: 494 HLSLIRKLYDFAAEEEVLETTIQTIYLKFLLYIDPSVSASELL 536
Score = 49 (22.3 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 784 TSHPSLSNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDL 825
T+ S++NA ++CD L ++K+ W V L K D+
Sbjct: 1242 TNTESVNNANISCDTSPL---QTKSGAWETVLDLDNKKSNDV 1280
Score = 46 (21.3 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 439 DLALKQGQQQWEAFILLYEMLE-EYSTHLVEAA 470
DLA + W+ F LYEM+ + S + ++AA
Sbjct: 318 DLANIEMLGSWKKFTTLYEMIALDTSLNQIQAA 350
Score = 46 (21.3 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 1411 RNNLPSVRQYLET--FAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAANVIL-H 1467
++++ SVR+Y+ T F+IT F S + P+L + P A+S++ F V H
Sbjct: 377 KSSMESVRKYMMTLMFSITNMSAFSSNL-----PLLTK-TLLPAAMSAHYFDVKGVSCPH 430
Query: 1468 ASKAVQF 1474
K F
Sbjct: 431 GEKLSLF 437
Score = 42 (19.8 bits), Expect = 5.6e-24, Sum P(4) = 5.6e-24
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 1402 THFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIA 1461
T +L LY + PSV F + ++K + + P+ DY R A+S + +
Sbjct: 517 TIYLKFLLYID--PSVSASELLFTLVSHIKLKGGTYKYVEPLFEDY--RDLAVSHFDDLQ 572
Query: 1462 A--NVILHASKAVQFRHLEDLLPPIV 1485
A N+ + K F DLL I+
Sbjct: 573 AKENLTTNIGKDTIF----DLLASII 594
Score = 41 (19.5 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 361 FWEEIKRGLVDEEGLVRKQSLHILKAVLQ 389
+W I+ L ++ RK +L ILK +Q
Sbjct: 272 YWRHIQTELDNDVHEHRKLALSILKLTIQ 300
Score = 41 (19.5 bits), Expect = 9.0e-25, Sum P(5) = 9.0e-25
Identities = 22/92 (23%), Positives = 38/92 (41%)
Query: 1445 RDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVY 1504
+D D+ P L ++ ++ SKAV F L LL P S+ ++ T LL Y
Sbjct: 598 KDIDITPDFLIEVAKSKQDIPVYTSKAVTF--LTQLLSG-EP---SNGYTYENATALLSY 651
Query: 1505 -QVLCKLFPTLDFGTSQKMPLEKSCFEDLKSY 1535
+ +++ K +EK + K +
Sbjct: 652 PNFTISTWKSINVNNLFKSVMEKFSLDKFKFF 683
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1289 DAKTEV-SLLAKSPVPELTEAFINTELYARVSVAVL 1323
D+ EV L+ SP+ T++ I T ++ +++ V+
Sbjct: 27 DSLEEVLELIETSPLDITTDSNIETPIFEKITEQVI 62
Score = 40 (19.1 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 69 CNYIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSF-----------IPLMKMRH 117
C + ++ + H ++ IFI + F SF+W+ + LM ++
Sbjct: 784 CKLLYFIIDSYIHCSTSVSDDDIFIVKFIFEKF-SFIWECINSERLVLKERDLHLMLIKG 842
Query: 118 AFEPEVLNQISESFFDVVT 136
F P +L S + D +T
Sbjct: 843 LFHPVILYFGSNQYIDTLT 861
Score = 38 (18.4 bits), Expect = 2.2e-24, Sum P(4) = 2.2e-24
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 754 LSGCSKQQSANNCKSRM 770
L GC+ ++ A++C M
Sbjct: 188 LLGCNSEEIADSCSKLM 204
>WB|WBGene00020498 [details] [associations]
symbol:T14B4.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR001537
Pfam:PF00588 GO:GO:0009792 GO:GO:0003723 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 EMBL:FO080626 eggNOG:COG0566
GeneTree:ENSGT00390000003939 RefSeq:NP_495375.3
ProteinModelPortal:Q22484 SMR:Q22484 PaxDb:Q22484
EnsemblMetazoa:T14B4.1 GeneID:174110 KEGG:cel:CELE_T14B4.1
UCSC:T14B4.1 CTD:174110 WormBase:T14B4.1 HOGENOM:HOG000019396
InParanoid:Q22484 OMA:MSSENWQ NextBio:882553 Uniprot:Q22484
Length = 1225
Score = 329 (120.9 bits), Expect = 7.0e-23, Sum P(4) = 7.0e-23
Identities = 74/250 (29%), Positives = 132/250 (52%)
Query: 1609 TIKNESLKIGEDPDCAETLSDLDKEESFSQLPKDSLLDFQKKITL-PKHENQDNSSSSFF 1667
TI N + E + + +++++ F P + K + P EN+D
Sbjct: 982 TIPNNIIM--EMNNITHQIKSMNEDQEFLSAPSEVYSALSKNASCAPSMENED------V 1033
Query: 1668 GNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTC 1727
G E+ + E + E+ Q + + + ++VASL+D+ NL G+ RT
Sbjct: 1034 GEEESPIEFDE-QPENTNASTSFQRKIVKENELNDGGISLIVVASLVDKPNNLGGICRTS 1092
Query: 1728 EVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLE 1787
E+F L +AD + D F+ +S+++E W I V ++ +L+ + G++V+ E
Sbjct: 1093 EIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVKRTNLLPYLQNLRANGYTVIAAE 1152
Query: 1788 QTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIA 1847
QT +S+ + ++FPKK V+V+G EKEG+PV+++ +D +EI Q+G RSLNVHV+ A+
Sbjct: 1153 QTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQTVEIKQVGHTRSLNVHVTAALM 1212
Query: 1848 LWEYTRQQRF 1857
+ ++ Q RF
Sbjct: 1213 IAKFAEQVRF 1222
Score = 45 (20.9 bits), Expect = 7.0e-23, Sum P(4) = 7.0e-23
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 507 FDWLSVLWERGFCHGNPQVRYMIMQSFLGIE 537
F WL V R H N +R ++ + I+
Sbjct: 138 FQWLKVALFRAMLHTNGWIRVWAIEKSISID 168
Score = 45 (20.9 bits), Expect = 7.0e-23, Sum P(4) = 7.0e-23
Identities = 21/101 (20%), Positives = 42/101 (41%)
Query: 710 VLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLR-ARVREWLSGCS-----KQQSA 763
++E +++C V E L F + EF S R + WL+ + +
Sbjct: 828 IVEWTLAMLC---VKFEKL--FEKLIDEEFEKNMASQRIGSICSWLNVLNLIARVAPKFV 882
Query: 764 NNCKSRMLVLKSLNDFPISFTSHPSLSNAFVTCDDEDLDSW 804
++C +++V + +FP+ T+ + F T D + W
Sbjct: 883 DSCLDKVIVWCTAQNFPVRCTALAAARLMFSTFDKDRRKKW 923
Score = 43 (20.2 bits), Expect = 7.0e-23, Sum P(4) = 7.0e-23
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 449 WEAFILLYEMLEEYSTHLVEAAWNHQITLL 478
W F L E LEE H++ TLL
Sbjct: 99 WTDFYTLVEALEEPQFHIIRPVLPRFDTLL 128
Score = 43 (20.2 bits), Expect = 1.1e-22, Sum P(4) = 1.1e-22
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1114 FSDDVVRYIFNDLVESL-----ENAGEGSLLPMLRSVRLTL 1149
FS DV+ + NDL E + N G L +L+S+ + L
Sbjct: 415 FSSDVLECMKNDLGEYILTQIISNKGSKRELELLQSLHIPL 455
Score = 41 (19.5 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 805 ESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNF 860
+++A + L I+D++ + V F N ++ C+Q + + +L + F
Sbjct: 785 KTRAVELLHLLALKIEDQESASKVFDFCINCVVDPCQQFSIKLIVEWTLAMLCVKF 840
>TIGR_CMR|CPS_0784 [details] [associations]
symbol:CPS_0784 "RNA methyltransferase, TrmH family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 Pfam:PF00588
GO:GO:0003723 GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 RefSeq:YP_267533.1
ProteinModelPortal:Q488I1 STRING:Q488I1 GeneID:3520896
KEGG:cps:CPS_0784 PATRIC:21464873 HOGENOM:HOG000023814 OMA:ELCHESV
BioCyc:CPSY167879:GI48-870-MONOMER Uniprot:Q488I1
Length = 180
Score = 153 (58.9 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 43/149 (28%), Positives = 68/149 (45%)
Query: 1708 VLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVN 1767
++V + N+ R + F + + A + DK+ + S KWV VE +
Sbjct: 31 IVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKKMKKASRNEAKWV-CVEYS-D 88
Query: 1768 SIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACI 1827
S L+ EG ++ +E S+ + +P K VLVLG E++G+ + + I
Sbjct: 89 STTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSLQQI 148
Query: 1828 EIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
IP G+ SLNV +GAI L E Q R
Sbjct: 149 HIPMFGMGNSLNVSTAGAIVLAECANQIR 177
>TIGR_CMR|BA_0547 [details] [associations]
symbol:BA_0547 "RNA methyltransferase, TrmH family, group
2" species:198094 "Bacillus anthracis str. Ames" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01885 InterPro:IPR001537
InterPro:IPR016914 Pfam:PF00588 PIRSF:PIRSF029256 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0008757 GO:GO:0008175 HOGENOM:HOG000272757 KO:K03216
OMA:EAWRQNG TIGRFAMs:TIGR00185 RefSeq:NP_843082.1
RefSeq:YP_017169.1 RefSeq:YP_026794.1 HSSP:P44868
ProteinModelPortal:Q81YT5 DNASU:1087852
EnsemblBacteria:EBBACT00000011962 EnsemblBacteria:EBBACT00000014890
EnsemblBacteria:EBBACT00000021617 GeneID:1087852 GeneID:2817158
GeneID:2847818 KEGG:ban:BA_0547 KEGG:bar:GBAA_0547 KEGG:bat:BAS0516
ProtClustDB:CLSK915854 BioCyc:BANT260799:GJAJ-576-MONOMER
BioCyc:BANT261594:GJ7F-602-MONOMER Uniprot:Q81YT5
Length = 162
Score = 129 (50.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 43/144 (29%), Positives = 63/144 (43%)
Query: 1717 IP-NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLER 1775
IP N +ARTC I D + L + W + +SI+ F E+
Sbjct: 12 IPANTGNIARTCAATGTELHLIRPLGFSTDDKM-LKRAGLDYWQHVKITYYDSIEEFYEK 70
Query: 1776 KKH-EGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM-LDACIEIPQLG 1833
K E F + + A++ D K V GRE G+P ++I D C+ IP
Sbjct: 71 NKDGEFFYLTKYGEKAHTA-FDYSKREKDYYFVFGRETNGLPANVIEENFDHCLRIPMTD 129
Query: 1834 VVRSLNVHVSGAIALWEYTRQQRF 1857
VRSLN+ + AI ++E RQQ +
Sbjct: 130 KVRSLNLSNTAAILIYEAFRQQNY 153
>TIGR_CMR|GSU_1462 [details] [associations]
symbol:GSU_1462 "RNA methyltransferase, TrmH family, group
3" species:243231 "Geobacter sulfurreducens PCA" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001537 InterPro:IPR004441
InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032 SMART:SM00967
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00186 HOGENOM:HOG000218798
KO:K03218 OMA:NITDPRN RefSeq:NP_952513.1 ProteinModelPortal:Q74D57
GeneID:2686213 KEGG:gsu:GSU1462 PATRIC:22025767
ProtClustDB:CLSK828365 BioCyc:GSUL243231:GH27-1441-MONOMER
Uniprot:Q74D57
Length = 245
Score = 141 (54.7 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 52/166 (31%), Positives = 74/166 (44%)
Query: 1696 AMETIRASRQQ-----FVLVASLIDRIPNLAGLARTCEVFKASGLAIA-DANILHDKQFQ 1749
A+E I AS Q +LV I NL L R+ A G+ I D +
Sbjct: 81 ALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAACAGAHGVIIPRDRAAGVTASVE 140
Query: 1750 LISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLG 1809
IS A + +P+ +V ++ LE K EGF G +A S L + V+V+G
Sbjct: 141 KISAGATETIPVAQV--TNVVQALETLKEEGFWAFGTADSAAS-SLYSHDLTGNVVIVIG 197
Query: 1810 REKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
E EG+ + D + IP G V SLN V+G + L+E RQ+
Sbjct: 198 GEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEVVRQR 243
>UNIPROTKB|P0AGJ5 [details] [associations]
symbol:yfiF "predicted methyltransferase" species:83333
"Escherichia coli K-12" [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR001537
InterPro:IPR013123 InterPro:IPR016479 Pfam:PF00588 Pfam:PF08032
PIRSF:PIRSF006280 SMART:SM00967 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 EMBL:D13169 EMBL:J03725
eggNOG:COG0566 PIR:D65036 RefSeq:NP_417076.1 RefSeq:YP_490809.1
ProteinModelPortal:P0AGJ5 SMR:P0AGJ5 DIP:DIP-47835N IntAct:P0AGJ5
MINT:MINT-1218417 PaxDb:P0AGJ5 PRIDE:P0AGJ5
EnsemblBacteria:EBESCT00000003960 EnsemblBacteria:EBESCT00000017378
GeneID:12934479 GeneID:947066 KEGG:ecj:Y75_p2534 KEGG:eco:b2581
PATRIC:32120563 EchoBASE:EB1734 EcoGene:EG11786
HOGENOM:HOG000218800 KO:K03214 OMA:IVRLWAT ProtClustDB:PRK10864
BioCyc:EcoCyc:EG11786-MONOMER BioCyc:ECOL316407:JW2565-MONOMER
Genevestigator:P0AGJ5 Uniprot:P0AGJ5
Length = 345
Score = 142 (55.0 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 46/157 (29%), Positives = 71/157 (45%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHD-KQFQLISVTAEKWV 1759
+A Q VL NL G+ R+C F G+ + DA +L + AE
Sbjct: 192 QAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQ 251
Query: 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDI 1819
PI ++I + L+ + G++V+ PL + P K VLVLG+E EG+P
Sbjct: 252 PITG---DNIVNVLDDFRQAGYTVVTTSSEQGK-PLFKTSLPAKMVLVLGQEYEGLPDAA 307
Query: 1820 IHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
D ++I G V LN+ V+ + L E+ RQ +
Sbjct: 308 RDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
>TIGR_CMR|CPS_4975 [details] [associations]
symbol:CPS_4975 "tRNA (guanosine-2'-O-)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006396 "RNA
processing" evidence=ISS] [GO:0009020 "tRNA
(guanosine-2'-O-)-methyltransferase activity" evidence=ISS]
InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588 Pfam:PF12105
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0001510
eggNOG:COG0566 GO:GO:0009020 HOGENOM:HOG000285175 KO:K00556
ProtClustDB:PRK11081 RefSeq:YP_271614.1 ProteinModelPortal:Q47UA9
STRING:Q47UA9 GeneID:3523112 KEGG:cps:CPS_4975 PATRIC:21472743
OMA:VEKPHNL BioCyc:CPSY167879:GI48-4976-MONOMER Uniprot:Q47UA9
Length = 235
Score = 133 (51.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 37/140 (26%), Positives = 72/140 (51%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTA---EKWVPIVEVPVNSIKHFLER 1775
NLA + RTC+ A G++ A + ++ ++ +A + W+ + + +
Sbjct: 32 NLAAVVRTCD---AIGISDVHA-VWKSEEAEVRGGSAAGSQNWIDVHNY--HKTADAIAA 85
Query: 1776 KKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVV 1835
K +G VL + ++ + + K T ++LG+EK G + + + D I IP +G+V
Sbjct: 86 LKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELADQHIVIPMVGMV 145
Query: 1836 RSLNVHVSGAIALWEYTRQQ 1855
+SLNV V+ ++ L+E RQ+
Sbjct: 146 QSLNVSVACSVVLYEAQRQR 165
>UNIPROTKB|P0AGJ2 [details] [associations]
symbol:trmH species:83333 "Escherichia coli K-12"
[GO:0009020 "tRNA (guanosine-2'-O-)-methyltransferase activity"
evidence=IEA;IMP] [GO:0030488 "tRNA methylation" evidence=TAS]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588
Pfam:PF12105 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
EMBL:L10328 eggNOG:COG0566 EMBL:M24503 GO:GO:0009020 PIR:JV0043
RefSeq:NP_418108.1 RefSeq:YP_491783.1 ProteinModelPortal:P0AGJ2
SMR:P0AGJ2 DIP:DIP-35977N IntAct:P0AGJ2 PRIDE:P0AGJ2
EnsemblBacteria:EBESCT00000003689 EnsemblBacteria:EBESCT00000016548
GeneID:12933575 GeneID:948161 KEGG:ecj:Y75_p3523 KEGG:eco:b3651
PATRIC:32122789 EchoBASE:EB0960 EcoGene:EG10967
HOGENOM:HOG000285175 KO:K00556 OMA:VHAVWPT ProtClustDB:PRK11081
BioCyc:EcoCyc:EG10967-MONOMER BioCyc:ECOL316407:JW3626-MONOMER
BioCyc:MetaCyc:EG10967-MONOMER Genevestigator:P0AGJ2 Uniprot:P0AGJ2
Length = 229
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
K +G +L + N++ + + + T +++G+EK GI + + + D I IP +G+V+
Sbjct: 87 KGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQ 146
Query: 1837 SLNVHVSGAIALWEYTRQQR 1856
SLNV V+ A+ L+E RQ++
Sbjct: 147 SLNVSVASALILYEAQRQRQ 166
>UNIPROTKB|Q3A9P4 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 38/156 (24%), Positives = 69/156 (44%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVP 1760
R + F+LV + ++ NL + R+ E F G+ I + + +A ++
Sbjct: 83 RKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTG-AVAKASAGAYLK 141
Query: 1761 IVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII 1820
+ ++ L K +G V+G + + + D F LV+G E G+ I+
Sbjct: 142 VPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWDTD-FKLPLALVIGGENVGLTSHIL 200
Query: 1821 HMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
D + IP +G + SLN V+ A+ + E RQ+R
Sbjct: 201 RECDFTVSIPMVGTINSLNASVAAALLMAEVVRQRR 236
>TIGR_CMR|CHY_2335 [details] [associations]
symbol:CHY_2335 "RNA methyltransferase, TrmH family, group
3" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] [GO:0008173 "RNA
methyltransferase activity" evidence=ISS] InterPro:IPR001537
InterPro:IPR004441 InterPro:IPR013123 Pfam:PF00588 Pfam:PF08032
SMART:SM00967 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566
TIGRFAMs:TIGR00186 HOGENOM:HOG000218798 KO:K03218
RefSeq:YP_361140.1 ProteinModelPortal:Q3A9P4 STRING:Q3A9P4
GeneID:3727244 KEGG:chy:CHY_2335 PATRIC:21277737 OMA:DKGFWIY
BioCyc:CHYD246194:GJCN-2334-MONOMER Uniprot:Q3A9P4
Length = 237
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 38/156 (24%), Positives = 69/156 (44%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVP 1760
R + F+LV + ++ NL + R+ E F G+ I + + +A ++
Sbjct: 83 RKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTG-AVAKASAGAYLK 141
Query: 1761 IVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII 1820
+ ++ L K +G V+G + + + D F LV+G E G+ I+
Sbjct: 142 VPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWDTD-FKLPLALVIGGENVGLTSHIL 200
Query: 1821 HMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
D + IP +G + SLN V+ A+ + E RQ+R
Sbjct: 201 RECDFTVSIPMVGTINSLNASVAAALLMAEVVRQRR 236
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.135 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1857 1762 0.00092 125 3 11 22 0.50 33
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 644 (68 KB)
Total size of DFA: 779 KB (2329 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 163.03u 0.13s 163.16t Elapsed: 00:00:07
Total cpu time: 163.03u 0.13s 163.16t Elapsed: 00:00:07
Start: Fri May 10 10:37:15 2013 End: Fri May 10 10:37:22 2013