BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000208
(1857 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13395|TARB1_HUMAN Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1
Length = 1621
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 121/160 (75%), Gaps = 5/160 (3%)
Query: 1701 RASR-----QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTA 1755
RA+R + ++VASLID+ NL GL RTCEVF AS L + + DKQFQ +SV+A
Sbjct: 1453 RAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSA 1512
Query: 1756 EKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGI 1815
E+W+P+VEV + +L++KK EG++++G+EQTA S+ L QY FP+K++L+LG E+EGI
Sbjct: 1513 EQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGI 1572
Query: 1816 PVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
P ++I LD C+EIPQ G++RSLNVHVSGA+ +WEYTRQQ
Sbjct: 1573 PANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1612
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 1346 SGKLFLLGLLDFVVNDKDLARELYKKY---SAIHRRKVRAWQMICILSRFVDNDIVGQVT 1402
S KLF+ L +++ +L + K+Y S HR K R WQ + +L +D + + +
Sbjct: 1133 SHKLFIEDLAIKLLDKDELVSKSKKRYYVNSLQHRVKNRVWQTLLVLFPRLDQNFLNGII 1192
Query: 1403 HFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVAE 1438
+ + + NN S++ ++E I I KFP + +
Sbjct: 1193 DRIFQAGFTNNQASIKYFIEWIIILILHKFPQFLPK 1228
>sp|Q07527|TRM3_YEAST tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM3 PE=1 SV=1
Length = 1436
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 112/177 (63%), Gaps = 11/177 (6%)
Query: 1690 LQARSLAMETIR----------ASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD 1739
LQ +S A ET+ +R + ++V+SL+D+ PNL G+ R C+V L + D
Sbjct: 1259 LQTKSGAWETVLDLDNKKSNDVVTRSELIVVSSLVDKPPNLGGICRLCDVLGVGLLTVQD 1318
Query: 1740 ANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLD-QY 1798
+ + QF+ ++VTA++W+P+ EV ++ I F++ KK EG++++GLEQT S+ LD +
Sbjct: 1319 IKVKNHPQFKNVAVTADRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNF 1378
Query: 1799 MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
FPKK++++LG E GIP ++ LD C+EI Q GV+RS+N+ + A+ + YT Q
Sbjct: 1379 QFPKKSLILLGTEAFGIPGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVHSYTVQH 1435
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=trmH PE=1 SV=1
Length = 211
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 1689 VLQARSLAMETIRASRQQ-FVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQ 1747
VL+ R + + RQ+ ++ A + N + + RTC+ L A K
Sbjct: 7 VLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKI 66
Query: 1748 FQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLV 1807
+ I+ + KWV I +V N ++ LE K + GF ++ + S+ + + K TVLV
Sbjct: 67 NEGITQGSHKWVFIEKVD-NPVQKLLEFK-NRGFQIVATWLSKESVNFREVDYTKPTVLV 124
Query: 1808 LGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
+G E +G+ +I+ + D I IP G+ +SLNV V+ I L+E RQ+
Sbjct: 125 VGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQR 172
>sp|P0AGJ5|YFIF_ECOLI Uncharacterized tRNA/rRNA methyltransferase YfiF OS=Escherichia coli
(strain K12) GN=yfiF PE=3 SV=1
Length = 345
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHD-KQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL G+ R+C F G+ + DA +L + AE PI ++I + L+ +
Sbjct: 210 NLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITG---DNIVNVLDDFR 266
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
G++V+ + PL + P K VLVLG+E EG+P D ++I G V
Sbjct: 267 QAGYTVV-TTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAG 325
Query: 1838 LNVHVSGAIALWEYTRQQR 1856
LN+ V+ + L E+ RQ +
Sbjct: 326 LNISVATGVLLGEWWRQNK 344
>sp|P0AGJ6|YFIF_ECO57 Uncharacterized tRNA/rRNA methyltransferase YfiF OS=Escherichia coli
O157:H7 GN=yfiF PE=3 SV=1
Length = 345
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHD-KQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL G+ R+C F G+ + DA +L + AE PI ++I + L+ +
Sbjct: 210 NLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITG---DNIVNVLDDFR 266
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
G++V+ + PL + P K VLVLG+E EG+P D ++I G V
Sbjct: 267 QAGYTVV-TTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAG 325
Query: 1838 LNVHVSGAIALWEYTRQQR 1856
LN+ V+ + L E+ RQ +
Sbjct: 326 LNISVATGVLLGEWWRQNK 344
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri
GN=trmH PE=3 SV=1
Length = 229
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
K +G +L + N++ + + + T +++G+EK GI + + + D I IP +G+V+
Sbjct: 87 KGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQ 146
Query: 1837 SLNVHVSGAIALWEYTRQQR 1856
SLNV V+ A+ L+E RQ++
Sbjct: 147 SLNVSVASALILYEAQRQRQ 166
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmH PE=1 SV=1
Length = 229
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
K +G +L + N++ + + + T +++G+EK GI + + + D I IP +G+V+
Sbjct: 87 KGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQ 146
Query: 1837 SLNVHVSGAIALWEYTRQQR 1856
SLNV V+ A+ L+E RQ++
Sbjct: 147 SLNVSVASALILYEAQRQRQ 166
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
O157:H7 GN=trmH PE=3 SV=1
Length = 229
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
K +G +L + N++ + + + T +++G+EK GI + + + D I IP +G+V+
Sbjct: 87 KGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQ 146
Query: 1837 SLNVHVSGAIALWEYTRQQR 1856
SLNV V+ A+ L+E RQ++
Sbjct: 147 SLNVSVASALILYEAQRQRQ 166
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr0955 PE=3 SV=1
Length = 384
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 33/174 (18%)
Query: 1701 RASRQQFVLVASLIDRIP---NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEK 1757
+A Q V +ID I NL + RT E F A G+ + Q ++ +T+
Sbjct: 209 KAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLP--------QRRVAGITST- 259
Query: 1758 WVPIVEVPVNSIKHF-----------LERKKHEGFSVLGL---EQTANSIPLDQYMFPKK 1803
+++V +++HF LE K GF + G +QTA L Q +
Sbjct: 260 ---VMKVAAGALEHFPVARVVNLSRALETLKESGFWIYGTVAGKQTA----LHQADLREP 312
Query: 1804 TVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857
LV+G E EG+ + D I IP G SLN V+ AI+L+E RQ+ F
Sbjct: 313 MGLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQRGF 366
>sp|O51468|Y516_BORBU Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0516 PE=3 SV=1
Length = 228
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 11/182 (6%)
Query: 1677 LEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLA 1736
L++EK + Q +L +ET + F+L+ I+ N + RT E F +
Sbjct: 50 LKLEKNKNVKTQTKDFENL-LETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVI 108
Query: 1737 IADANILHDKQFQL-ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLE---QTANS 1792
D L S A ++V ++ V +I + + K+ GF + + Q N
Sbjct: 109 TTQKRSAKDNSTVLRTSSGASQYVK--KMTVTNINNTINLLKNYGFWIYTGDIKGQDINK 166
Query: 1793 IPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT 1852
I ++ KK L+LG E +G+ I D I IP G + SLNV VS I ++E
Sbjct: 167 IKIND----KKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIK 222
Query: 1853 RQ 1854
RQ
Sbjct: 223 RQ 224
>sp|B1MGY6|Y572_MYCA9 Uncharacterized tRNA/rRNA methyltransferase MAB_0572 OS=Mycobacterium
abscessus (strain ATCC 19977 / DSM 44196) GN=MAB_0572
PE=3 SV=1
Length = 315
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 1701 RASRQQFVLVASLIDRIP---NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEK 1757
RA Q +LVA +D I NL + R+ F G+ I Q + SVTA
Sbjct: 161 RAEAQPALLVA--LDNISDPRNLGAIVRSVAAFGGHGVVIP--------QRRSASVTAVA 210
Query: 1758 WV----PIVEVPV---NSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGR 1810
W +PV ++ L+ + +G +++GL+ ++ LD +V+G
Sbjct: 211 WRTSAGAAARLPVARATNLTRTLKDWQDKGITIVGLDAGGDT-ELDNLDGVGDIAVVVGS 269
Query: 1811 EKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
E +G+ + DA + IP G V SLN V+ + L E RQ+R
Sbjct: 270 EGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQRR 315
>sp|O31590|TRML_BACSU Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus
subtilis (strain 168) GN=cspR PE=3 SV=2
Length = 160
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 1717 IP-NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLE- 1774
IP N +ARTC + I D + L + W + V +S++ E
Sbjct: 15 IPANTGNIARTCAATNTTLHLIRPLGFSTDDKM-LKRAGLDYWEFVNVVYHDSLEELFEA 73
Query: 1775 RKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII-HMLDACIEIPQLG 1833
KK + F + Q ++ D + V GRE G+P D+I + +D C+ +P
Sbjct: 74 YKKGKFFFITKFGQQPHT-SFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTE 132
Query: 1834 VVRSLNVHVSGAIALWEYTRQQRF 1857
VRSLN+ + AI ++E RQQ +
Sbjct: 133 HVRSLNLSNTAAILVYEALRQQNY 156
>sp|Q9CCW4|Y324_MYCLE Uncharacterized tRNA/rRNA methyltransferase ML0324 OS=Mycobacterium
leprae (strain TN) GN=ML0324 PE=3 SV=2
Length = 309
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 173 NLGAIVRSVAAFSGHGILIP--------QRRSASVTAVAWRTSAGAAARIPVARATNLTR 224
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ +G V+GL+ ++ LD +V+G E +G+ + H D + IP
Sbjct: 225 ALKVWADQGLRVIGLDHDGDT-ALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPM 283
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQRF 1857
G V SLN V+ + L E RQ+R
Sbjct: 284 AGQVESLNASVAVGVVLAEIARQRRL 309
>sp|B8ZUB0|Y324_MYCLB Uncharacterized tRNA/rRNA methyltransferase MLBr00324
OS=Mycobacterium leprae (strain Br4923) GN=MLBr00324 PE=3
SV=2
Length = 309
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 173 NLGAIVRSVAAFSGHGILIP--------QRRSASVTAVAWRTSAGAAARIPVARATNLTR 224
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ +G V+GL+ ++ LD +V+G E +G+ + H D + IP
Sbjct: 225 ALKVWADQGLRVIGLDHDGDT-ALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPM 283
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQRF 1857
G V SLN V+ + L E RQ+R
Sbjct: 284 AGQVESLNASVAVGVVLAEIARQRRL 309
>sp|D7A3L6|TRML_STAND tRNA (cytidine(34)-2'-O)-methyltransferase OS=Starkeya novella
(strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC
12443 / NCIB 9113) GN=trmL PE=3 SV=1
Length = 158
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 1768 SIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACI 1827
S K F E ++ EG ++ L T ++ + F + V++LGRE G+P + DA I
Sbjct: 63 SFKAFEEWRRAEGRRLV-LATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADARI 121
Query: 1828 EIPQLGVVRSLNVHVSGAIALWEYTRQ 1854
IP RSLNV ++GA+ L E RQ
Sbjct: 122 VIPLNEGARSLNVALAGAMILGEALRQ 148
>sp|O30272|Y2399_ARCFU Uncharacterized tRNA/rRNA methyltransferase AF_2399 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628
/ NBRC 100126) GN=AF_2399 PE=3 SV=1
Length = 224
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHF---LER 1775
N+ RT E F A+G+ + + Q +V A + +P+ +++F +++
Sbjct: 90 NIGACIRTAEFFGAAGVVLPKRRV---GSIQEGAVKASAGA-VFHIPIARVENFASAIKK 145
Query: 1776 KKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVV 1835
K GF+ L + + + P +V+G E G+ + D ++IP +G V
Sbjct: 146 LKKLGFTTLAADLDGEDLEAVSLLLP--AAVVIGGEDRGVSRPVKKQCDFVVKIPGVGKV 203
Query: 1836 RSLNVHVSGAIALWEYTRQQ 1855
SLN+ V+ I L+ +RQ+
Sbjct: 204 NSLNLSVAAGIFLYTLSRQK 223
>sp|A0R557|Y6073_MYCS2 Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_5913
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_6073 PE=3 SV=1
Length = 314
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKW-------VPIVEVPVNSIKH 1771
NL + R+ F G+ I Q + SVTA W + ++
Sbjct: 178 NLGAIVRSVAAFAGHGVVIP--------QRRSASVTAVAWRTSAGAAARVPVARATNLNR 229
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ G ++GL+ ++ LD+ TV+V+G E +G+ + DA + IP
Sbjct: 230 TLKSFADAGLQIVGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPM 288
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQR 1856
G SLN V+ + L E RQ+R
Sbjct: 289 AGPTESLNASVAAGVVLAEIARQRR 313
>sp|A1TG08|Y5337_MYCVP Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=Mvan_5337 PE=3 SV=1
Length = 314
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 1687 DQVLQARSLAMETIRASRQQFVLVASLIDRIP---NLAGLARTCEVFKASGLAIADANIL 1743
D + +A+S AM + LVA +D I NL + R+ F G+ I
Sbjct: 152 DLLAEAKSDAMPAL--------LVA--LDNISDPRNLGAIVRSVAAFGGHGVLIP----- 196
Query: 1744 HDKQFQLISVTAEKWV----PIVEVPV---NSIKHFLERKKHEGFSVLGLEQTANSIPLD 1796
Q + SVTA W PV ++ L++ G V+GL+ ++ +D
Sbjct: 197 ---QRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQVVGLDADGDTT-VD 252
Query: 1797 QYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
Q V+V+G E +G+ + DA + IP G SLN V+ + L E RQ+R
Sbjct: 253 QIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRR 312
>sp|Q743W2|Y479_MYCPA Uncharacterized tRNA/rRNA methyltransferase MAP_0479 OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_0479
PE=3 SV=1
Length = 309
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 173 NLGAIVRSVAAFGGHGVLIP--------QRRSASVTAVAWRTSAGAAARIPVARATNLTR 224
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ G V+GL+ +++ LD V+V+G E +G+ + D + IP
Sbjct: 225 TLQDWADRGLRVIGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPM 283
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQR 1856
G SLN V+ + L E +RQ+R
Sbjct: 284 AGSAESLNASVAAGVVLAEISRQRR 308
>sp|A0QAB6|Y574_MYCA1 Uncharacterized tRNA/rRNA methyltransferase MAV_0574 OS=Mycobacterium
avium (strain 104) GN=MAV_0574 PE=3 SV=1
Length = 309
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 173 NLGAIVRSVAAFGGHGVLIP--------QRRSASVTAVAWRTSAGAAARIPVARATNLTR 224
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ G V+GL+ ++ LD V+V+G E +G+ + D + IP
Sbjct: 225 TLQDWADRGLRVIGLDAGGDTT-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPM 283
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQR 1856
G SLN V+ + L E +RQ+R
Sbjct: 284 AGSAESLNASVAAGVVLAEISRQRR 308
>sp|P32813|TRML_GEOSE Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus
stearothermophilus PE=3 SV=1
Length = 157
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 3/143 (2%)
Query: 1717 IP-NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLER 1775
IP N +ARTC + I D + L + W + +S+ HF ++
Sbjct: 12 IPANTGNIARTCAATNTALHLIRPLGFSTDDK-MLRRAGLDYWEFVNIHYYDSLDHFFQQ 70
Query: 1776 KKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII-HMLDACIEIPQLGV 1834
++ F + D K+ + GRE G+P +++ D C+ IP
Sbjct: 71 NQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDRCLRIPMTEN 130
Query: 1835 VRSLNVHVSGAIALWEYTRQQRF 1857
VR+LN+ + AI ++E RQQ F
Sbjct: 131 VRALNLSNTAAILVYEALRQQSF 153
>sp|P74516|TRML_SYNY3 Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1
Length = 153
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 1718 PNLAGLARTCEVFKASGLAIADANILHDKQFQL----ISVTAEKWVPIVEVPV-NSIKHF 1772
PN +ARTC A+G + +++ F+L + + P V++ NS + F
Sbjct: 13 PNTGNIARTC---AATG---TELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEF 66
Query: 1773 LERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPV---DIIHMLDACIEI 1829
+ + +G ++LG T ++ Y + L++G E +G+P D+ L CI +
Sbjct: 67 ITHWRGQGGNLLGFSVTG-TVNFWDYTYQSTDWLMMGSETDGLPQMMRDLSTQL-LCIPM 124
Query: 1830 PQLGVVRSLNVHVSGAIALWEYTRQQR 1856
P VRSLN+ S AIAL+E RQ R
Sbjct: 125 PH-SEVRSLNLASSAAIALFEAGRQLR 150
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter
sp. (strain ADP1) GN=rlmB PE=3 SV=1
Length = 248
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQL------ISVTAEKWVPIVEVPVNSIKHF 1772
NL RT A+ + IA + D+ L ++ + V ++V N +
Sbjct: 110 NLGACIRT-----AAAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTL 163
Query: 1773 LERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQL 1832
K H V+G ++P+ +Y F +V+G E G+ D + IP
Sbjct: 164 AHIKAHFFVKVVGTMLDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMS 223
Query: 1833 GVVRSLNVHVSGAIALWEYTRQQ 1855
G ++SLNV V+ +AL+E RQ+
Sbjct: 224 GNLQSLNVSVAAGMALYEACRQR 246
>sp|A4T5L0|Y1447_MYCGI Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447
PE=3 SV=1
Length = 314
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ + Q + SVTA W PV ++
Sbjct: 177 NLGAIVRSVAAFGGHGVVLP--------QRRSASVTAVAWRTSAGAAARTPVARATNLNR 228
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L++ G V+GL+ ++ +D+ T++V+G E +G+ + D + IP
Sbjct: 229 TLKQYADAGLQVVGLDAGGDTT-IDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPM 287
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQRF 1857
G SLN V+ + L E RQ+R
Sbjct: 288 AGPTESLNASVAAGVVLAEIARQRRL 313
>sp|B2IBT9|TRML_BEII9 tRNA (cytidine(34)-2'-O)-methyltransferase OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=trmL PE=3 SV=2
Length = 160
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 1784 LGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVS 1843
L L T S P + F +L++GRE G+P + DA + IP +RSLNV V+
Sbjct: 75 LVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVVIPLRPPMRSLNVAVA 134
Query: 1844 GAIALWEYTRQ 1854
A+ L E RQ
Sbjct: 135 AAMVLGEALRQ 145
>sp|Q9CJP3|RLMB_PASMU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pasteurella
multocida (strain Pm70) GN=rlmB PE=3 SV=1
Length = 245
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 17/199 (8%)
Query: 1667 FGNREAYKQLLEIEKEDELFDQVLQARSLA---METIRASRQQ-FVLVASLIDRIPNLAG 1722
F NR+ + E E + +V A+ L ++T+ ++ +LV + NL
Sbjct: 52 FVNRQTLDKKAEGEVHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGA 111
Query: 1723 LARTCEVFKASGLAIADANILHDKQFQLISVT------AEKWVPIVEVPVNSIKHFLERK 1776
RT A + + DK QL ++ A + VP++ V N + E +
Sbjct: 112 CLRT-----ADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRV-TNLARTLRELQ 165
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
+ V+G A + L Q LV+G E EG+ D I IP G V
Sbjct: 166 QKHNIWVVGTAGEATNT-LYQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVS 224
Query: 1837 SLNVHVSGAIALWEYTRQQ 1855
SLNV V+ + L+E RQ+
Sbjct: 225 SLNVSVATGVCLFEIVRQR 243
>sp|Q8Z182|RLMB_SALTI 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella typhi
GN=rlmB PE=3 SV=1
Length = 243
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 1738 ADANILH------DKQFQL------ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785
ADA +H D+ QL ++ A + VP++ V ++ + + E ++G
Sbjct: 116 ADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRV--TNLARTMRMLQEENIWIVG 173
Query: 1786 LEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGA 1845
A+ L Q P + LV+G E EG+ D I IP G V SLNV V+
Sbjct: 174 TAGEADHT-LYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATG 232
Query: 1846 IALWEYTRQQ 1855
I L+E RQ+
Sbjct: 233 ICLFEAVRQR 242
>sp|Q8ZKA2|RLMB_SALTY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rlmB
PE=3 SV=1
Length = 243
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 1738 ADANILH------DKQFQL------ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785
ADA +H D+ QL ++ A + VP++ V ++ + + E ++G
Sbjct: 116 ADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRV--TNLARTMRMLQEENIWIVG 173
Query: 1786 LEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGA 1845
A+ L Q P + LV+G E EG+ D I IP G V SLNV V+
Sbjct: 174 TAGEADHT-LYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATG 232
Query: 1846 IALWEYTRQQ 1855
I L+E RQ+
Sbjct: 233 ICLFEAVRQR 242
>sp|P44906|RLMB_HAEIN 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rlmB PE=1 SV=1
Length = 246
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Query: 1667 FGNREAYKQLLEIEKEDELFDQVLQARSLA---METIRASRQQ-FVLVASLIDRIPNLAG 1722
F NR+ + + E + +V A+ L ++ I A++Q +LV + NL
Sbjct: 52 FVNRQTLDKKADGEVHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGA 111
Query: 1723 LARTCEVFKASGLAIADANILHDKQFQLISVT------AEKWVPIVEVPVNSIKHFLERK 1776
RT + A + + DK QL S+ A + VP++ V N + + +
Sbjct: 112 CLRTADAAGAVAVIVP-----KDKSAQLTSIARKVACGAAETVPLIRV-TNLSRTLRDLQ 165
Query: 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVR 1836
++ V+G A + Q LV+G E EG+ D I IP G V
Sbjct: 166 QNHNIWVVGTAGEATET-IYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVS 224
Query: 1837 SLNVHVSGAIALWEYTRQQ 1855
SLNV V+ + L+E RQ+
Sbjct: 225 SLNVSVATGVCLFEIVRQR 243
>sp|P18644|TSNR_STRAJ rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces azureus
GN=tsnR PE=1 SV=1
Length = 269
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 8/179 (4%)
Query: 1675 QLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASG 1734
QL + E++ + F R I ASR+ V+V + + N+ + RT ASG
Sbjct: 86 QLFKGERKAKTFGIARVPRPARFGDI-ASRRGDVVVLDGVKIVGNIGAIVRTSLALGASG 144
Query: 1735 LAIADANI--LHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANS 1792
+ + D++I + D++ Q S +P+V F+ + G ++ L+ +
Sbjct: 145 IILVDSDITSIADRRLQRASRGYVFSLPVVLSGREEAIAFI---RDSGMQLMTLKADGDI 201
Query: 1793 IPLDQYMFPKKTVLVLGREKEGIPVDII-HMLDACIEIPQLGVVRSLNVHVSGAIALWE 1850
+ P + L+ G EK G P D+ A + IP + SLNV VS IAL E
Sbjct: 202 SVKELGDNPDRLALLFGSEKGG-PSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHE 259
>sp|P47588|TRML_MYCGE Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG346 PE=3 SV=1
Length = 166
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 9/147 (6%)
Query: 1717 IPNLAG-LARTCEVFKASGLAIADANI-LHDKQFQLISVTAEKWVPIVEVPVNSIKHFLE 1774
IPN G + R+C FKA+ I L+DK+ ++ W I S +HFL+
Sbjct: 15 IPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKR--MVRAGLNCWDKIQLFEHKSWEHFLQ 72
Query: 1775 RKKHEGFSVLGLEQTANSIPLDQYM---FPKKTVLVLGREKEGIPVDII-HMLDACIEIP 1830
E ++ L ++ + P M P + V G+E +G+P I+ + I IP
Sbjct: 73 ATT-ENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIMDNFKQNQIRIP 131
Query: 1831 QLGVVRSLNVHVSGAIALWEYTRQQRF 1857
VRS+N+ + L+EY++Q ++
Sbjct: 132 IWNSVRSINLANAVVCILYEYSKQNQY 158
>sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG
12228) GN=rlmB PE=3 SV=1
Length = 248
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 1719 NLAGLARTCEVFKASGLAI-ADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL RT + + + D + + + ++ A + +P+V V ++ LE+ +
Sbjct: 110 NLGACLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLV--AVTNLARTLEKLQ 167
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
G V+G A+ L Q TVLV+G E +G+ D +P G V S
Sbjct: 168 QRGLWVVGTAGEADKT-LYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSS 226
Query: 1838 LNVHVSGAIALWEYTRQQ 1855
LNV V+ + L+E RQ+
Sbjct: 227 LNVSVATGVCLFEILRQR 244
>sp|Q87VK2|RLMB_PSESM 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmB PE=3 SV=1
Length = 250
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAI---ADANILHDKQFQLISVTAEK 1757
R+ +LV + NL RT + A LA+ D + + ++ A +
Sbjct: 92 RSEGPPLLLVLDGVTDPHNLGACLRTADA--AGALAVIVPKDKSATLTPAVRKVACGAAE 149
Query: 1758 WVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPV 1817
+P+V V ++ LE+ + G V+G A + L Q T++++G E +G+
Sbjct: 150 VIPLV--AVTNLARTLEKLQQRGLWVVGTAGEA-EVELYQQDLTGPTIIIMGAEGKGMRR 206
Query: 1818 DIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
D + +P G V SLNV V+ + L+E RQ+
Sbjct: 207 LTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 1686 FDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHD 1745
FD+ LQ + + +R V++ ++ NL + RT + ASG+ DA I+
Sbjct: 81 FDEFLQKQK------KKARYSTVIILDGLEDPHNLGSILRTAD---ASGV---DAVIIPK 128
Query: 1746 KQFQLISVTAEK-------WVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQY 1798
++ ++ T K VP++ V ++ ++ K GF + G E N+
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRV--TNLSKTIDELKDNGFWIAGTEAN-NATDYRDL 185
Query: 1799 MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
+V+G E +G+ + D I+IP +G V SLN V+ ++ ++E R++
Sbjct: 186 QADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKR 242
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 1686 FDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHD 1745
FD+ LQ + + +R V++ ++ NL + RT + ASG+ DA I+
Sbjct: 81 FDEFLQKQK------KKARYSTVIILDGLEDPHNLGSILRTAD---ASGV---DAVIIPK 128
Query: 1746 KQFQLISVTAEK-------WVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQY 1798
++ ++ T K VP++ V ++ ++ K GF + G E N+
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRV--TNLSKTIDELKDNGFWIAGTEAN-NATDYRDL 185
Query: 1799 MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
+V+G E +G+ + D I+IP +G V SLN V+ ++ ++E R++
Sbjct: 186 QADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKR 242
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIV 1762
+ Q F L+ ++ NL + RT + A G+ I + L + A+ +
Sbjct: 94 NEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKR-----RAVGLTTTVAKASTGAI 148
Query: 1763 E-VPVNSIKHF---LERKKHEGFSVLGLEQTANS--IPLDQYMFPKKTVLVLGREKEGIP 1816
E +PV + + LE K G V+G + +A +D M LV+G E +G+
Sbjct: 149 EHIPVARVTNLARTLEEMKERGIWVVGTDASAREDFRNMDGNM---PLALVIGSEGKGMG 205
Query: 1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
+ D I++P G V SLN V+ + ++E R++
Sbjct: 206 RLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKR 244
>sp|Q8Y016|RLMB_RALSO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmB PE=3 SV=1
Length = 249
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 1719 NLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL R + A +A D ++ + ++ A + VP + V ++ L +
Sbjct: 109 NLGACLRVADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYITV--TNLARTLRELQ 166
Query: 1778 HEGFSVLGLEQTANSIPLDQYM--FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVV 1835
G V+G TA+ D Y F LV+G E EG+ D + IP G V
Sbjct: 167 QRGVWVIG---TADEAEQDLYRADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSV 223
Query: 1836 RSLNVHVSGAIALWEYTRQQ 1855
SLNV V+ + L+E RQ+
Sbjct: 224 ESLNVSVASGVCLFEAVRQR 243
>sp|Q7VTK4|RLMB_BORPE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=rlmB PE=3 SV=1
Length = 245
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 1719 NLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL RT + +A D + + Q ++ A VP + V N + E K+
Sbjct: 109 NLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTV-TNLARTMRELKE 167
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
+ + V +Q S + Q + V+G E EG+ D + IP LG V S
Sbjct: 168 RDVWLVGTDDQAGES--MHQVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVES 225
Query: 1838 LNVHVSGAIALWEYTRQQR 1856
LNV V+ A+ L+E RQ++
Sbjct: 226 LNVSVASAVCLYESVRQRQ 244
>sp|Q7W7I7|RLMB_BORPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=rlmB PE=3 SV=1
Length = 245
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 1719 NLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL RT + +A D + + Q ++ A VP + V N + E K+
Sbjct: 109 NLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTV-TNLARTMRELKE 167
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
+ + V +Q S + Q + V+G E EG+ D + IP LG V S
Sbjct: 168 RDVWLVGTDDQAGES--MHQVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVES 225
Query: 1838 LNVHVSGAIALWEYTRQQR 1856
LNV V+ A+ L+E RQ++
Sbjct: 226 LNVSVASAVCLYESVRQRQ 244
>sp|Q7WKX5|RLMB_BORBR 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=rlmB PE=3 SV=1
Length = 245
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 1719 NLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKK 1777
NL RT + +A D + + Q ++ A VP + V N + E K+
Sbjct: 109 NLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTV-TNLARTMRELKE 167
Query: 1778 HEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRS 1837
+ + V +Q S + Q + V+G E EG+ D + IP LG V S
Sbjct: 168 RDVWLVGTDDQAGES--MHQVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVES 225
Query: 1838 LNVHVSGAIALWEYTRQQR 1856
LNV V+ A+ L+E RQ++
Sbjct: 226 LNVSVASAVCLYESVRQRQ 244
>sp|B2HJ20|Y5079_MYCMM Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=MMAR_5079 PE=3 SV=1
Length = 310
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 174 NLGAIVRSVAAFGGHGVLIP--------QRRSASVTAVAWRTSAGAAARMPVARATNLTR 225
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ G V+GL+ ++ +D V+V+G E +G+ + D + +P
Sbjct: 226 ALKDWADRGVRVVGLDAGGDT-AIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPM 284
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQR 1856
G SLN V+ + L E RQ+R
Sbjct: 285 AGPTESLNASVAAGVVLAEIARQRR 309
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155 OS=Mycobacterium
ulcerans (strain Agy99) GN=MUL_4155 PE=3 SV=1
Length = 310
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWV----PIVEVPV---NSIKH 1771
NL + R+ F G+ I Q + SVTA W +PV ++
Sbjct: 174 NLGAIVRSVAAFGGHGVLIP--------QRRSASVTAVAWRTSAGAAARMPVARATNLTR 225
Query: 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831
L+ G V+GL+ ++ +D V+V+G E +G+ + D + +P
Sbjct: 226 ALKDWADRGVRVVGLDAGGDT-AIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPM 284
Query: 1832 LGVVRSLNVHVSGAIALWEYTRQQR 1856
G SLN V+ + L E RQ+R
Sbjct: 285 AGPTESLNASVAAGVVLAEIARQRR 309
>sp|Q88DE7|RLMB_PSEPK 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
putida (strain KT2440) GN=rlmB PE=3 SV=1
Length = 248
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
Query: 1701 RASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAI-ADANILHDKQFQLISVTAEKWV 1759
R +LV + NL RT + A+ + + D + + ++ A + +
Sbjct: 92 RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVI 151
Query: 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDI 1819
P+V V ++ LE+ + G V+G A + Q V+++G E +G+
Sbjct: 152 PLV--AVTNLARTLEKLQQRGLWVVGTAGEAEQ-EIYQQDLTGPLVMIMGAEGKGMRRLT 208
Query: 1820 IHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856
D +++P G V SLNV V+ + L+E RQ++
Sbjct: 209 REHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQ 245
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1673 PE=3 SV=1
Length = 274
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1779 EGFSVLGLEQTANSIPLDQYM----FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGV 1834
E F GL+ A Q + F + T+++ G E +G+ ++ + + IPQ
Sbjct: 187 EKFHTQGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTTHQVAIPQAPQ 246
Query: 1835 VRSLNVHVSGAIALWEYTRQQ 1855
V SLNV ++ + L+E RQQ
Sbjct: 247 VESLNVAIAVGVMLYEARRQQ 267
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 9/158 (5%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPI 1761
S +L+ I NL RT + +A D + + ++ A + VP
Sbjct: 93 SEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPY 152
Query: 1762 VEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYM--FPKKTVLVLGREKEGIPVDI 1819
+ V ++ L K G ++G + N+ D Y P V+G E +G+
Sbjct: 153 ITV--TNLARTLRELKEYGIWIIGTDMGGNA---DLYHCDLPDSAAWVMGNEGDGMRRLT 207
Query: 1820 IHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857
D + IP G V S+NV VS + L E TR+QR
Sbjct: 208 REHCDMLVSIPMFGTVESMNVSVSAGMVLSE-TRRQRV 244
>sp|Q9PC00|RLMB_XYLFA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain 9a5c) GN=rlmB PE=3 SV=1
Length = 249
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 4/155 (2%)
Query: 1702 ASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAI-ADANILHDKQFQLISVTAEKWVP 1760
A Q +LV + NL R+ + + I D ++ + + S A +P
Sbjct: 95 AGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLP 154
Query: 1761 IVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDII 1820
++ V VN + E +K + + + GLE A + L K LVLG E +G+
Sbjct: 155 VIAV-VNLARSLRELQKQDVW-IYGLEGEAET-SLYALDLRGKVALVLGGEADGLRRLTR 211
Query: 1821 HMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
D IP G V SLNV V+ + L+E RQ+
Sbjct: 212 EHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQR 246
>sp|Q9JZR3|RLMB_NEIMB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmB PE=3 SV=1
Length = 250
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 5/156 (3%)
Query: 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASG-LAIADANILHDKQFQLISVTAEKWVPI 1761
S +L+ I NL RT + +A D + + ++ A + VP
Sbjct: 93 SEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPY 152
Query: 1762 VEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIH 1821
+ V ++ L K G ++G + + S L P V+G E +G+
Sbjct: 153 ITV--TNLARTLRELKEYGIWIIGTDMSGES-DLYHCNLPDSAAWVMGNEGDGMRRLTRE 209
Query: 1822 MLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857
D + IP G V S+NV VS + L E TR+QR
Sbjct: 210 HCDMLVSIPMFGTVESMNVSVSAGMVLSE-TRRQRV 244
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 1708 VLVASLIDRIPNLAGLARTCEVFKASGLAIADA-NILHDKQFQLISVTAEKWVPIVEVPV 1766
VL+ ++ NL + RT + G+ I ++ + S A + VP++ V
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRV-- 154
Query: 1767 NSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDAC 1826
++ ++ K GF V G E N+ +V+G E +G+ + D
Sbjct: 155 TNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFY 213
Query: 1827 IEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
I+IP +G V SLN V+ ++ ++E R++
Sbjct: 214 IKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 1708 VLVASLIDRIPNLAGLARTCEVFKASGLAIADA-NILHDKQFQLISVTAEKWVPIVEVPV 1766
VL+ ++ NL + RT + G+ I ++ + S A + VP++ V
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRV-- 154
Query: 1767 NSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDAC 1826
++ ++ K GF V G E N+ +V+G E +G+ + D
Sbjct: 155 TNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFY 213
Query: 1827 IEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
I+IP +G V SLN V+ ++ ++E R++
Sbjct: 214 IKIPMVGHVNSLNASVAASLMMYEVFRKR 242
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
Query: 1708 VLVASLIDRIPNLAGLARTCEVFKASGLAIADA-NILHDKQFQLISVTAEKWVPIVEVPV 1766
VL+ ++ NL + RT + G+ I ++ + S A + VP++ V
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRV-- 154
Query: 1767 NSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDAC 1826
++ ++ K GF V G E N+ +V+G E +G+ + D
Sbjct: 155 TNLAKTIDELKDNGFWVAGTEAN-NATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFY 213
Query: 1827 IEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855
I+IP +G V SLN V+ ++ ++E R++
Sbjct: 214 IKIPMVGHVNSLNASVAASLMMYEVFRKR 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,036,818
Number of Sequences: 539616
Number of extensions: 27393934
Number of successful extensions: 61500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 61431
Number of HSP's gapped (non-prelim): 136
length of query: 1857
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1725
effective length of database: 120,340,147
effective search space: 207586753575
effective search space used: 207586753575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)