Query 000208
Match_columns 1857
No_of_seqs 313 out of 1829
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 23:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0839 RNA Methylase, SpoU fa 100.0 2E-186 5E-191 1677.5 45.2 1455 71-1857 1-1477(1477)
2 COG0566 SpoU rRNA methylases [ 100.0 7.8E-36 1.7E-40 335.5 17.2 192 1661-1856 63-258 (260)
3 TIGR00186 rRNA_methyl_3 rRNA m 100.0 6.3E-35 1.4E-39 323.8 19.4 190 1662-1855 42-237 (237)
4 PRK11181 23S rRNA (guanosine-2 100.0 5.1E-35 1.1E-39 326.0 18.1 190 1663-1856 48-243 (244)
5 PRK10864 putative methyltransf 100.0 3.1E-34 6.7E-39 332.8 20.5 190 1663-1856 153-345 (346)
6 PRK11081 tRNA guanosine-2'-O-m 100.0 3.5E-32 7.5E-37 301.5 19.0 161 1693-1856 5-166 (229)
7 TIGR00185 rRNA_methyl_2 rRNA m 100.0 4.4E-30 9.6E-35 268.9 16.2 145 1707-1856 2-148 (153)
8 PF00588 SpoU_methylase: SpoU 100.0 5E-30 1.1E-34 262.4 12.8 140 1706-1849 1-142 (142)
9 PRK10358 putative rRNA methyla 100.0 1.1E-28 2.4E-33 260.0 17.7 146 1707-1857 2-150 (157)
10 TIGR00050 rRNA_methyl_1 RNA me 99.9 2.2E-24 4.7E-29 240.0 16.4 143 1706-1855 3-157 (233)
11 PRK15114 tRNA (cytidine/uridin 99.9 1.9E-23 4E-28 234.2 16.1 144 1706-1854 4-159 (245)
12 KOG2506 SpoU rRNA Methylase fa 99.9 2.8E-23 6E-28 234.6 9.6 189 1662-1854 166-370 (371)
13 COG0219 CspR Predicted rRNA me 99.9 6.4E-22 1.4E-26 207.0 15.6 147 1707-1857 3-151 (155)
14 PRK10433 putative RNA methyltr 99.9 5.2E-22 1.1E-26 220.7 15.7 144 1706-1854 2-158 (228)
15 KOG0838 RNA Methylase, SpoU fa 99.8 1.3E-19 2.9E-24 201.7 13.5 169 1669-1855 90-271 (271)
16 COG0565 LasT rRNA methylase [T 99.7 1.1E-17 2.3E-22 186.8 14.3 142 1706-1853 4-158 (242)
17 PRK03958 tRNA 2'-O-methylase; 97.3 0.0013 2.7E-08 72.5 10.8 121 1722-1853 21-149 (176)
18 PF09936 Methyltrn_RNA_4: SAM- 96.2 0.0075 1.6E-07 66.9 5.8 133 1717-1851 25-182 (185)
19 COG4080 SpoU rRNA Methylase fa 96.0 0.042 9E-07 58.8 10.1 140 1706-1854 2-146 (147)
20 COG1303 Uncharacterized protei 94.5 0.28 6.1E-06 53.8 10.7 118 1723-1853 23-148 (179)
21 PRK12703 tRNA 2'-O-methylase; 90.9 1.4 3E-05 53.7 10.9 116 1723-1853 21-143 (339)
22 COG4752 Uncharacterized protei 76.0 6 0.00013 43.6 6.2 134 1719-1854 30-186 (190)
23 PF01994 Trm56: tRNA ribose 2' 69.6 5.2 0.00011 42.6 3.9 79 1767-1853 11-94 (120)
24 PF09895 DUF2122: RecB-family 66.9 31 0.00067 36.4 8.7 85 1760-1851 21-106 (106)
25 PRK02135 hypothetical protein; 62.0 19 0.00041 41.5 6.7 87 1760-1854 107-197 (201)
26 PF12717 Cnd1: non-SMC mitotic 60.6 58 0.0013 36.0 10.0 90 1414-1509 1-93 (178)
27 COG1385 Uncharacterized protei 57.7 29 0.00064 40.9 7.5 114 1706-1823 79-212 (246)
28 KOG0838 RNA Methylase, SpoU fa 55.4 1.3 2.8E-05 52.1 -3.8 116 1715-1850 58-189 (271)
29 PF14419 SPOUT_MTase_2: AF2226 50.1 51 0.0011 37.2 7.2 127 1718-1852 17-170 (173)
30 PF08032 SpoU_sub_bind: RNA 2' 44.2 8.4 0.00018 36.3 0.3 32 1662-1693 43-74 (76)
31 PRK11713 16S ribosomal RNA met 38.6 1.8E+02 0.004 33.8 9.9 109 1705-1823 74-198 (234)
32 PF04452 Methyltrans_RNA: RNA 37.7 52 0.0011 37.8 5.3 112 1707-1824 63-196 (225)
33 PF01603 B56: Protein phosphat 37.7 2.6E+02 0.0057 35.3 11.7 97 1392-1493 129-231 (409)
34 PF12460 MMS19_C: RNAPII trans 36.3 3.1E+02 0.0067 34.5 12.0 151 1348-1510 188-354 (415)
35 KOG0839 RNA Methylase, SpoU fa 33.8 1.5E+02 0.0032 41.8 9.0 232 354-628 238-482 (1477)
36 TIGR00046 RNA methyltransferas 31.6 2.5E+02 0.0055 32.9 9.6 112 1706-1823 77-205 (240)
37 PF04407 DUF531: Protein of un 30.9 77 0.0017 35.8 5.0 46 1801-1848 119-164 (173)
38 KOG1061 Vesicle coat complex A 30.3 7E+02 0.015 34.3 14.0 300 1120-1501 201-521 (734)
39 PF10978 DUF2785: Protein of u 30.2 64 0.0014 36.2 4.4 139 592-777 33-173 (175)
40 PF04013 Methyltrn_RNA_2: Puta 26.5 2.2E+02 0.0047 33.3 7.7 85 1762-1854 108-197 (199)
41 PTZ00429 beta-adaptin; Provisi 25.8 8.9E+02 0.019 33.5 14.2 75 1387-1464 127-206 (746)
42 PLN03076 ARF guanine nucleotid 23.0 3.5E+02 0.0077 40.4 10.4 121 507-633 1343-1493(1780)
No 1
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=100.00 E-value=2.3e-186 Score=1677.47 Aligned_cols=1455 Identities=27% Similarity=0.322 Sum_probs=1267.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcccccCCChhHHHHHHHHHhHHhHhhhccCChHHHHHHHHHhhhhhccccchhhccccccc
Q 000208 71 YIASMVGALCHLLKTLGAGYIFIAGANHDAFQSFMWKSFIPLMKMRHAFEPEVLNQISESFFDVVTKTNTWINLEKTLVP 150 (1857)
Q Consensus 71 ~~~s~~~~~chll~~~~~~~~~~~~~~~~~~~~~~w~~f~pl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~t~vp 150 (1857)
++.+.+++.||+++.+|+ .+.+++.|.|.+.||+|||+|+|+.|.|.+|.+.|.|.|+|||+.| .+||
T Consensus 1 ~~~~ll~~~~~pr~~~g~----l~~d~~~a~~le~~r~li~~~~~~~a~ds~~~~~i~E~~~evvi~~--------~lvp 68 (1477)
T KOG0839|consen 1 MVGGLLICKYLPREEQGK----LISDLIQADSLEEVRELIETSPLDIATDSNIETPIFEKITEVVIAY--------ALVP 68 (1477)
T ss_pred CchhhhhhhcchHHHHhH----HhhchhhhhhHHHHHHHHHhCchhhhhCCCCcchhhHHHHHHHHHH--------hcch
Confidence 356788999999999994 6899999999999999999999999999999999999999999988 8999
Q ss_pred ceeccccccccccccccccccccCCCCCCccCCCCCCCccchhhhhcccccccccchhhhHHHHHHHHHHHhcccCCChh
Q 000208 151 CIFSSVGFSLGVLQNEESDAIEWGSCSPFQGSKGETNASDMDKECMLSLSRSITLPTSCHILTLVMDSALRNLQAAPSTD 230 (1857)
Q Consensus 151 ~~~rs~~~~m~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l~~~l~~~~~~~~~~ 230 (1857)
+..|++|.+|||.||++++...|..+ |++ .++|+.....+.+ || |.+||.|..||+++++.++++|..+
T Consensus 69 ~l~r~~grs~g~~~~~~~~~~~~~~~----cLr----s~~~~~~v~~~~r--l~-~l~~e~l~~lln~~f~~~~a~p~ve 137 (1477)
T KOG0839|consen 69 GLAREMGRSSGAEMNKALRTSAQLLC----CLR----SVWHKFQVWMSYR--LN-DLISENLKHLLNDNFGKKIAQPFVE 137 (1477)
T ss_pred HHHHHcCcccCCCCchhchhHHhhhh----hhh----hhhHHHHHHHhcc--cc-HHHHHHHHHHHhhhhccccccHHHH
Confidence 99999999999999999999999886 444 7899999998875 99 9999999999999999999999888
Q ss_pred HHhhccchhhhhhhhHHHHHHHHHHHHHhhccccchhhhhhhhHHHHHHhhcccceeeeeccceeeechhhhHHHHHhhh
Q 000208 231 SLLENGCYAEKFAANLLWYLCNMTERLLLQSVEHRSCAIAFLLPIILKAFVSLCSSEISFHGHIYILSRKCFFKKIWKCC 310 (1857)
Q Consensus 231 ~~~~~~~~~~~~~~~l~w~l~~~~~~~~~~~~e~rsca~~~ll~~~~~~~~~~~~~~~~~~~~~~~~sr~~f~~~iw~~c 310 (1857)
++. +...|++|+-.++|+.++.+||+|++.++.|.+.+|.++++++.|+. |+|.| |
T Consensus 138 sfA----------a~~~~~~~~e~~~Ll~~s~~h~~~~v~~~~~~~~~a~s~~~~~~iv~------L~~cg--------~ 193 (1477)
T KOG0839|consen 138 SFA----------AEQNANIKHENLHLLILSLLHYLEVVYLFDECKNGASSKCLDFIIVP------LLGCG--------S 193 (1477)
T ss_pred HHh----------ccccccCcCccchHHHHHHHHHHHHHHhcccccccccchhhhhhhHH------hhcCC--------c
Confidence 877 88999999999999999999999999999999999999999999988 99999 9
Q ss_pred hhcccccchhccchhhHHHHHhhccccccCCCCCCCCCCcccchhhhhHHHHHHHHhcccCccchhhhhHHHHHHHHhhh
Q 000208 311 RTLFSLGTLERRDAFTVLSLYLSYSSYTEGSENSDRSDRGEEFDIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQI 390 (1857)
Q Consensus 311 ~~lf~lg~~er~day~ilSl~l~~~~~~~~~~~~~~~~~~~~~d~r~~~~fW~~i~~glvd~d~LvRKqs~~iLk~~l~i 390 (1857)
..+||+|..+++|||.+||.+.++ |.|.++.|||+|+.|++--...||||.++|.+-++.|
T Consensus 194 ~~~as~gS~~mrda~svLS~ca~t-------------------d~r~e~~~wDeik~~~~ag~~~vrkq~f~i~~~~l~i 254 (1477)
T KOG0839|consen 194 EEIASSGSKLMRDAISVLSKCANT-------------------DSRFEKLIWDEIKQLYAAGSQQVRKQKFSISFLLLFI 254 (1477)
T ss_pred hhhhcccchHHHHHHHHHHHHhcc-------------------cccccccchHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999871 4588999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccCCC-CCCcCCchhhhhhhhhhhhccCccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhHhh
Q 000208 391 RGENQGHSGVSDMRSQGKN-STARGMTKRDLWAVKEAKSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEA 469 (1857)
Q Consensus 391 ~~~~~~~s~~~~~~~~~~~-~~~~~~tk~~~Wa~keakslgvg~~~~s~~~~~~~~q~~w~~f~llyE~l~e~~tHlve~ 469 (1857)
.+.....++ +.+++. .+++.|+..+.|+.+|+|+||||.+..|.+..+ + .|.+|++|||||||||+|+|+|
T Consensus 255 ~aa~lt~~~----~kye~~~av~rs~~l~ad~~~~e~r~lavs~l~~s~~kgs-~---~W~~f~tl~E~LEe~q~H~i~p 326 (1477)
T KOG0839|consen 255 LAAELTPEL----IKYEKTDAVWRSIQLEADNDVHEHRKLAVSILKLSIQKGS-S---HWITFQTLFEKLEELQNHEILP 326 (1477)
T ss_pred HHhhhhHHH----HhHhhhhhHHHhhhcccccCCcchhcccHHHHHHHHhccc-h---HHHHHHHHHHHHhcccceEeec
Confidence 877766554 556666 899999999999999999999999999988877 3 9999999999999999999999
Q ss_pred hhhhhhhhhccccCCCCCCCCCCccccccccCCcccchhHHHHHHhhccCCCChhHHHHHHHhhhhhcccccccccccCC
Q 000208 470 AWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEIFDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVP 549 (1857)
Q Consensus 470 ~W~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~~iL~~rgf~h~Np~vr~~vm~sfl~i~~~~y~~~~~~~p 549 (1857)
||++.++| +| ++++||.- +.|++|+|.|||.||||-+||.+|++||+|+|++|++| +|
T Consensus 327 vwpkfdtL-~e-svr~Dg~l-----------------nqWl~v~~~R~f~hdN~~lr~~~~e~flsi~~~~~k~~---~~ 384 (1477)
T KOG0839|consen 327 VWPKFDTL-YE-SVRLDGSL-----------------NQWLAVKQDRIFIHDNEHLRHSWGEIFLSIGLKSSKES---VR 384 (1477)
T ss_pred hhhHHHHH-HH-HHHHcCch-----------------hHHHHHHHHHHHhccCCeeeehhhhhhhhhchhhhccc---ch
Confidence 99966665 89 88999433 49999999999999999999999999999999999999 55
Q ss_pred ccccchhhhhccCCCccccccCCCCcccchhHHHHHHHHHHHHhccchhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000208 550 ESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERAASFLHQYASFLDTRKQIAFLSNLASVAKQQSFGRVGLMALAECIA 629 (1857)
Q Consensus 550 ~~Fvlgpli~~lnd~~~~k~f~~kgvy~s~~i~~a~~f~~~Y~~~l~~~~~~~fl~~l~s~ak~~sf~r~~lm~l~~~ia 629 (1857)
. ||+||||.+||+|.||+|++++|+|.||++..|++|...|++|+.+++++.|+.||+|.++ +-+||.
T Consensus 385 ~-fi~g~~i~~Ln~s~~~sd~pl~~i~~sp~~~~a~qf~v~y~Scl~~e~~s~Fl~nlls~~t-----------l~~Civ 452 (1477)
T KOG0839|consen 385 K-FIMGLMISILNMSAFSSDLPLLTITLSPAAMSAHQFDVKYVSCLHGEKLSLFLNNLLSQTT-----------LHECIV 452 (1477)
T ss_pred h-HhhhhhhhcccchhhcccCCccccccchhHHHHHHHHhhhcccCCchhhHHHHHHHHHHhH-----------hHhhhH
Confidence 4 9999999999999999999999999999999999999999999999999999999999996 788899
Q ss_pred HhcccccccccccccccCCCCCCCCcccCCCCCCccCCchhhHHHHHHHHHhhhcccCccccccccccccccccchhhHH
Q 000208 630 SAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKSDLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEK 709 (1857)
Q Consensus 630 s~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~s~~~~n~~~r~~~~~~~~~~~~~~~~e~ 709 (1857)
++...|+++..- ...++ +...|....+|+++++.+.++||+|++| .| +.+|-.++.| ..|
T Consensus 453 ~ilfvv~al~~v------------~~e~s----L~~Ddi~~~~dvL~fv~~~~q~~inhk~-ir-l~Ti~NL~df--yak 512 (1477)
T KOG0839|consen 453 DILFVVLALLNV------------EKETS----LDPDDIYLSYDVLVFVQNNKQKTINHKH-IR-LSTIRNLYDF--YAK 512 (1477)
T ss_pred HHHHHHHHhhcc------------ccccc----cCccccHHHHHHHHHHHHhhhhhcCcch-hh-HHHHHHHHHH--HHH
Confidence 998888888421 11121 3467789999999999999999999999 87 7788776666 888
Q ss_pred HHHhhhhcccccccchhHHHHHHhcccchhhccccchHHHHHHHhcccccccccccchhHHHHHhhcccCCCcccccCCC
Q 000208 710 VLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRARVREWLSGCSKQQSANNCKSRMLVLKSLNDFPISFTSHPSL 789 (1857)
Q Consensus 710 ~l~~~~s~~~~~~i~~~~~~~~i~~iP~eft~y~g~lr~~~~~Wl~g~~~~~~n~~~~~~~~ll~~~~d~p~~f~~~~~~ 789 (1857)
|...++++.+ ||+.++.||+. +|..|.||.++-+|.. .|..|.++.+.+.+.|.+-+.|+
T Consensus 513 v~~l~~tl~~----~Lg~llsyis~-----~v~~s~l~~~~~~~iq------lN~~~~d~v~~la~~y~~l~~fh----- 572 (1477)
T KOG0839|consen 513 VEVLETTLQT----ILGKLLSYISP-----SVSASELLFTLVSHIQ------LNGGTYDYVEPLAEDYRDLAVFH----- 572 (1477)
T ss_pred HHHHHHHHHH----HHhhhhheeCc-----ccchhHHHHHHHHHHH------hccchhHhHHHHHHHhhHhhhhh-----
Confidence 9999999998 99999999997 9999999999999998 34559999999999999977776
Q ss_pred CCcccccCchhhhhhHHHHHHHHHHHhhhccCccchhHHHHHHHhcCcccccccCcccccchhhHHHHHHHHHHHHH--H
Q 000208 790 SNAFVTCDDEDLDSWESKAKRWARVFFLVIKDEQDLAPVLKFIQNGGINICKQSNHVRCISMKFLILTLNFLQEIQI--M 867 (1857)
Q Consensus 790 ~~~~~~~d~e~~~~~~~~~~~~aR~~~~~~~~e~~l~~i~~~~~~~~~~~~~~~~~~~~~~~kf~i~~~~~~~el~~--~ 867 (1857)
..|||++...|.+...+|+|++.+++++|.+++.|-.|+.+ +...+++.++....|.|++++++.+|.|+++ +
T Consensus 573 ----~~Fdd~~~~l~l~~~~~w~~mf~l~i~Ker~l~di~ifvd~-llevl~ek~~~~~~P~k~ltf~LqLLlelpn~~~ 647 (1477)
T KOG0839|consen 573 ----DWFDDLQAKLNLTTNIGWDTMFDLLISKERDLKDIDIFVDF-LLEVLKEKQDIPVYPSKALTFLLQLLLELPNNGY 647 (1477)
T ss_pred ----hhhhhhhhhhhhHhhhhHHHHHHHHhhhhhhhhhheeeech-HHHHHHhcccccccchHHHHHHHHHHHhCccccc
Confidence 57999999999999999999999999999999999999999 9999999999999999999999999999999 8
Q ss_pred HHHhhcccceecchhhccccccccccchh---hhhhhHHHhhhhhHHHHhhhhccCCCccceeccccccccCCCCCcccc
Q 000208 868 QERYSECGIRIRTKSEIDSLKTVDQFSYA---EASIFHEKLANLFPNVLEELVCFSNLSCSIFWSNIAMEETNLPSSVIG 944 (1857)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~il~~~~~~~~~~~~if~~~~~~~~~~~~~s~~~ 944 (1857)
++..+...-.+++ +.|+.++.+.+ ..+.++|+. ++.++..+.+.+.+.+| +|
T Consensus 648 ~dgsS~~l~svkn-----f~gSte~si~qiil~kssm~k~~--~l~~l~~~hIyl~~~~c----sH-------------- 702 (1477)
T KOG0839|consen 648 TDGSSTALLSVKN-----FTGSTEKSINQIILFKSSMEKFS--LLKFLFFAHIYLKTYEC----SH-------------- 702 (1477)
T ss_pred cccchHHHHhhcc-----cccchhhhhHHHHhhHhhHHHHH--HHHHHHHhhhhHhhhhh----hh--------------
Confidence 8888777766664 44655444432 356677765 78888999999999999 43
Q ss_pred ccCCCCcccccccchHHHHHHHhhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Q 000208 945 KLGGPSQRRLSFSTTTVVLQAIMSVKAVASISSWCARLKRNASIEFAYDFMWNLFWKTIQSPTSDSESGAEVCLAAYEAL 1024 (1857)
Q Consensus 945 ~~~~~~q~~l~~~~~~~~~~~i~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~l 1024 (1857)
+|| +.+++.+++|++-.|++ |++++ -++.|+|++.-.+++++-+..++|+++++++.|+|
T Consensus 703 -rg~------sipl~~Avlq~L~emkt-------c~sat------~~Laff~k~~d~~pssq~e~l~a~~~~yll~~e~l 762 (1477)
T KOG0839|consen 703 -RGD------SIPLNFAVLQSLYEMKT-------CKSAT------QCLAFFFKVKDSAPSSQFELLNAFLKTYLLNRESL 762 (1477)
T ss_pred -cCC------cccchHHHHHHHHHhhh-------hHHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhhh
Confidence 555 78999999999999998 76665 78999999999999999999999999999999999
Q ss_pred -HHHHHhhc---cccchhhhcccchhhhhhhcCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHhhhccc
Q 000208 1025 -ASALKALV---GPQALCFFKKNDKLMLSAVEGKPLLDSWVQAFLQNINALLAAGVLARARRAILLNWKWLCLESLLSLP 1100 (1857)
Q Consensus 1025 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~in~~~~~~~~~~~~~a~~~~~kW~~~~~lLs~~ 1100 (1857)
+.+.++.| +..+.++++ | .+.++...+.++|..+|..+..+||+++..||+.+.|++++-.|+|.|+=+=.-++
T Consensus 763 ~~~~~k~hvel~s~~efnl~~-n-stlls~~~~~~~l~kiI~~yih~~nq~l~~~vl~~k~~~~~ps~~wecil~ar~i~ 840 (1477)
T KOG0839|consen 763 EGNDDKLHVELRSVDEFNLKD-N-STLLSNLAVCKLLYKIIDSYIHCSNQVLDDDVLIVKFIFEKPSFIWECILSARLIL 840 (1477)
T ss_pred ccccchhhHHHHhcccccccc-c-hhHHHHHHHHHHHHHHHHHHHhccchheecchhhhhhHhhhhhHHHHHHHHHHhhh
Confidence 99999988 778888777 4 78888899999999999999999999999999999999999999999954433333
Q ss_pred cccccCCCCcccccchhhHHHHHHHHHHHHHhhCCCCchhHHhHHHHHHhhhhcCCCCCccccccCCChHHHHHHHHHHH
Q 000208 1101 YCGLENGANCSYFFSDDVVRYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQMMWHLVRSSW 1180 (1857)
Q Consensus 1101 ~~~~~~~~~~~~~~s~~~~r~~~~~~lEsL~~Ag~gs~lpil~sl~ilL~~l~~~~~~s~~ss~~g~~~~~m~~L~~ssW 1180 (1857)
-+ .-.+++.+++|.+|..+++ |++++++-+|+++|.++.....++++++ -.||.+.|+|++.+-
T Consensus 841 ke-------rdt~lslD~Ik~~fh~iv~--e~~~~sn~lp~l~Sf~la~hi~~Sgs~S------~~v~~q~~~qll~sq- 904 (1477)
T KOG0839|consen 841 KE-------RDTVLSLDLIKGLFHPIVL--EKYFGSNQLPDLLSFKLAEHIQTSGSLS------YSVNRQSLLQLLGSQ- 904 (1477)
T ss_pred Hh-------hhhhhhHHHHHHhhHHHhh--hhhcCccccchHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHH-
Confidence 33 4568999999999999999 9999999999999999999999987766 348999999999998
Q ss_pred HHhhccCCCcchhHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHhCCCCccHHHHHHHHHhhhhhcCcchhHH
Q 000208 1181 ILHISCNKRRVAPIAALLSSVLHYSVFSEEEMHMMENTPGPLKWFVEKVLEEGTKSPRTIRLAALHLTGLWLTNPWIIKY 1260 (1857)
Q Consensus 1181 ~a~~dsn~r~~a~iaAfvs~vlhpslF~~~elh~~~~~~g~lKwfv~k~L~~gs~spRi~~lla~hl~~~Wl~~P~~a~~ 1260 (1857)
++..| +.++|++++.-++| +.+.|.++| +| +|+++++++.+ +|...
T Consensus 905 -L~Ia~---~~~pIa~il~k~l~-s~~~n~dvn---------~W-----------sp~nI~lg~f~-------~p~~~-- 950 (1477)
T KOG0839|consen 905 -LTIAA---ALRPIAKILGKLLR-SAIKNEDVN---------YW-----------SPINIILGVFK-------QPQMD-- 950 (1477)
T ss_pred -HHHHH---HhHHHHHHHHHHHH-HHhcccccc---------cc-----------chhhhhHhhcc-------CCccc--
Confidence 77777 67789999999999 899999988 55 89999999988 88887
Q ss_pred HHHHHHHHhhccccccChhHHHHhhhhcccccchhhccCCCccccccccccccceehhhHHHHHHHhh-hhhhhcCChhH
Q 000208 1261 YIKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLA-DQTEIVGSAKE 1339 (1857)
Q Consensus 1261 Y~~EL~~LlLyg~v~~ded~e~elaE~~~a~tev~~la~sp~~~lte~~~ntd~y~Rv~va~~l~~L~-d~s~~v~s~~e 1339 (1857)
+|++.+..|++++||+| |...+++.|+..++|++.|.++++|++ ++.+.+++ |+ |
T Consensus 951 --kElrll~~~~s~~Fded-------------e~s~l~kg~d~~l~eV~~nar~~ar~l-a~Kl~~la~Dg-n------- 1006 (1477)
T KOG0839|consen 951 --KELRLLKPVISSLFDED-------------ENSYLIKGHDELLEEVYGNARILARVL-AIKLILLANDG-N------- 1006 (1477)
T ss_pred --hhhhhhhhhhhhhcccc-------------ccchhhcCCcHHHHHHhcchhhhhHHH-HHHHHHHhccc-c-------
Confidence 89999999999999998 345678889999999999999999999 77777786 43 2
Q ss_pred hHHHhhhhHHHHHHHHHHhcCCchhhhhhhccCcHHHHHHHHHHHHHHhhhcccChhHHHhHHHH-HHHhhhcCCChh--
Q 000208 1340 CQDALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHF-LHISLYRNNLPS-- 1416 (1857)
Q Consensus 1340 ~~~a~~s~klf~~~LL~~~~~d~dlsK~~y~~nS~~HR~KlRlWQtLCvLsp~l~~d~v~~v~d~-I~~aL~~nNlPS-- 1416 (1857)
..+.++.+.+...+.|+|.+|++|+.+|..||+|+|+||+||++++++++++++.+.|+ +..++...|+.|
T Consensus 1007 ------a~ki~lIE~l~~k~~dkD~akkry~~~Sa~HR~K~RawQlLlll~~~~~~~~~~kv~D~~iic~~~s~qq~S~~ 1080 (1477)
T KOG0839|consen 1007 ------ALKIRLIEKLTEKTNDKDKAKKRYDGASALHRVKLRAWQLLLLLLLTTNENFKNKVSDTSIICILKSIQQESSP 1080 (1477)
T ss_pred ------HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhhhhcccHhhhcch
Confidence 44556666666677799999999999999999999999999999999999999999999 666667777777
Q ss_pred -HHHHHHHHHHH----HHhhCCchhhhhhhhhhccCCCCccchHHHHHHHH-HHHHhhchhhHHHHHhhhhhhhcccccc
Q 000208 1417 -VRQYLETFAIT----IYLKFPSLVAEQLVPILRDYDMRPQALSSYVFIAA-NVILHASKAVQFRHLEDLLPPIVPLLTS 1490 (1857)
Q Consensus 1417 -VRyYIEwFiI~----il~k~P~lle~~Llp~L~D~nlrpqvlsS~v~Iaa-~VLl~~~~~~q~~~L~~lL~~IlPw~tS 1490 (1857)
+|+|+|||++. ++..+|.++++++.+.+.||..+ ..+++...|++ .++++.....|..++++++++++|||++
T Consensus 1081 ~ik~~vew~i~~~~vkfyk~fpkf~de~l~~~lenys~~-vn~~~~eki~f~~~il~~n~~ekk~~lrqllp~fl~~l~~ 1159 (1477)
T KOG0839|consen 1081 LIKVYVEWFISSKVVKFYKTFPKFADEYLFSLLENYSKP-VNVVSAEKICFMVLILLRNDPEKKYGLRQLLPRFLCTLVP 1159 (1477)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCC-cceecHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhh
Confidence 99999999984 45557778888999999999944 55666666666 4455555567789999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHhhHHHhhhcCchhHHHHHHhhccccccCCCCCCCccccccc
Q 000208 1491 HHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKNSDCTRLRASMSGYLDAYDPNLSITPAVIFVN 1570 (1857)
Q Consensus 1491 h~~sVR~fAqllv~~iL~k~w~~l~~~~s~~~~le~~~l~~l~syL~~N~e~~RlR~~~~~fl~~FdP~~d~t~~~IF~~ 1570 (1857)
|- +++..+.|++| .+...+.+|++|+..++.+.+++.+|+.|+|.|.++++|+++|||..+++|++
T Consensus 1160 hl---------~~~w~l~r~fs-Ve~t~sltp~~e~llf~~~~~~~dkN~~knw~r~q~~gfl~a~dp~t~~~pe~---- 1225 (1477)
T KOG0839|consen 1160 HL---------ASNWPLVRHFS-VELTISLTPTFEALLFDHTLRNIDKNLYKNWKRTQIFGFLRAGDPNTWDLPED---- 1225 (1477)
T ss_pred HH---------HhhhhHhhcCc-HHHHhhhhHHHHHHHHHHHHhhhccChhhhHHHHHHhhhHhhcCCcccCCccc----
Confidence 93 33333444555 44555677899999999999999999999999999999999999999999998
Q ss_pred cCCCCccccccchhHHHHHHHHHhHHHHHhHhhhcch-hhhcccccccCCCCCcccccc-cccccccccCCCCCCccccc
Q 000208 1571 RDKELEFECVPTSLMEQVLNFLNDVREDLRYSMAKDV-VTIKNESLKIGEDPDCAETLS-DLDKEESFSQLPKDSLLDFQ 1648 (1857)
Q Consensus 1571 ~p~~s~~E~iP~~~~e~v~~FL~d~~~dLr~~~~kd~-~~~kne~~~i~~~~~~~~~~~-d~~~e~s~~~~~~~~~~~~Q 1648 (1857)
||++| ++..+..+.+|+++++|-.+.... -+.+ .+.+.+.|+...+... +...+.....+-..++.+.|
T Consensus 1226 ------fe~~P--l~gnVl~e~ndid~~~rs~~v~ne~dQe~-LS~ps~~derk~~lsk~~~~~~s~~nad~~~Ets~~q 1296 (1477)
T KOG0839|consen 1226 ------FELTP--LFGNVLKEVNDIDCPYRSESVFNEYDQEK-LSVPSGTDERKLWLSKRDTNTESVNNADISCETSPLQ 1296 (1477)
T ss_pred ------eeeee--ccccHHHHHHhccchhhhHHHHhhhhHHH-hcCCcccccccccccccccccccchhhcccCccccch
Confidence 47777 777888999999988887652111 0000 0112333222222211 11111112223356788899
Q ss_pred ccccCCCCCCCCCCCCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHH
Q 000208 1649 KKITLPKHENQDNSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCE 1728 (1857)
Q Consensus 1649 KKi~p~~~~~~~~d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAe 1728 (1857)
+|+.||.....+. .+.+....+++..++..+|||++.|++|+|+|+|+|||+
T Consensus 1297 fk~~pwnt~Vsdl----------------------------d~~ks~~v~rL~~grssLIVVASLVDKppNLgGicRTcE 1348 (1477)
T KOG0839|consen 1297 FKSGPWNTRVSDL----------------------------DNKKSNDVARLGVGRSSLIVVASLVDKPPNLGGICRTCE 1348 (1477)
T ss_pred hhcccccchHHHH----------------------------HHHHHhHHHHhccCceeEEEEeecccCCCccchhhhhhh
Confidence 9999998643220 111222234566778899999999999999999999999
Q ss_pred HhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEE
Q 000208 1729 VFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVL 1808 (1857)
Q Consensus 1729 AFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVL 1808 (1857)
.|||+-+++.+-.+.++|+++..||+|+.|+|+.+|+.+++..||+++|++||+|+|+|||..++.++++.||+|.++|+
T Consensus 1349 VFgvs~LvVad~~vi~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~kK~EGyTiIglEQTakSV~Ld~fqFPkKslilL 1428 (1477)
T KOG0839|consen 1349 VFGVSLLVVADIKVINDKQFKNLSVTAERWMPIEEVKLDELASFLQEKKKEGYTIIGLEQTAKSVKLDNFQFPKKSLILL 1428 (1477)
T ss_pred hhCcceEEEeeeeeecchhhhheeeeHHhccchhccChHHHHHHHHHhhhcCcEEEeehhcccccccccccCCcceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1809 GREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1809 GNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
|+|+.|||.++++..|.||+|||.|.+|||||+|++|+++|||+||+++
T Consensus 1429 G~EkEGIPvnLl~~LD~cvEIpQ~GviRSLNVHVsgAl~iweYTrQqrl 1477 (1477)
T KOG0839|consen 1429 GTEKEGIPVNLLSELDLCVEIPQFGVIRSLNVHVSGALIIWEYTRQQRL 1477 (1477)
T ss_pred cccccCCcHHHHHHHhHheeccccceeeeeeeehhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999985
No 2
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-36 Score=335.53 Aligned_cols=192 Identities=28% Similarity=0.396 Sum_probs=169.9
Q ss_pred CCCCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhh-ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecC
Q 000208 1661 NSSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRA-SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD 1739 (1857)
Q Consensus 1661 ~d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~-~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~ 1739 (1857)
.+.+.+..+++.++++++.++|||+++.+.+++....+.+.. ...+++|++|+|+||+|+|+|+|||+|||+++|++.+
T Consensus 63 ~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~~~~~~~~~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~Vi~~~ 142 (260)
T COG0566 63 KGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPLLDDLLDAEAQPLLLVLDGVTDPHNLGAIIRTADAFGVDGVILPK 142 (260)
T ss_pred cCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccchhhhhhcccCCEEEEEecCcCCcchhhHHhhHHHhCCCEEEECC
Confidence 356778889999999999999999999987776555443321 2458999999999999999999999999999999998
Q ss_pred CC--CCCchhHHhhcCCCceeeeEEEeccC-CHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCC
Q 000208 1740 AN--ILHDKQFQLISVTAEKWVPIVEVPVN-SIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIP 1816 (1857)
Q Consensus 1740 ~~--~~~~K~vRraSmGA~~wLPI~eV~~~-dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS 1816 (1857)
++ +++++.+ |+|+||.+++|+.++ . +..++++.+++.||+|+|++..+ +.++++.++++|++||||||++|||
T Consensus 143 ~~~~~~~~~v~-r~s~Ga~~~vp~~~~--~n~~~~~~~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvlG~Eg~Gls 218 (260)
T COG0566 143 RRADPLNPKVI-RASAGAAFHVPVIRV--TNLARTLLELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVLGNEGEGLS 218 (260)
T ss_pred CccCCccceeE-EecCChheeceeEEE--eccHHHHHHHHHHcCeEEEEECCCC-CcchhhccccCCEEEEECCCCCCcC
Confidence 76 5666665 589999999999887 4 46677777777999999999864 7899999999999999999999999
Q ss_pred HHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1817 ~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
+++++.||.+|+|||.|.++|||||||+||+|||+.||++
T Consensus 219 ~~~~~~~D~~v~IPm~G~v~SLNVsvAagI~Lye~~rq~~ 258 (260)
T COG0566 219 RLLLEHADQLVRIPMAGKVESLNVSVAAGILLYEARRQRR 258 (260)
T ss_pred HHHHhhCCEEEEecCCCCcchhHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999986
No 3
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=6.3e-35 Score=323.80 Aligned_cols=190 Identities=27% Similarity=0.366 Sum_probs=166.7
Q ss_pred CCCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHh----hccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEe
Q 000208 1662 SSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIR----ASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAI 1737 (1857)
Q Consensus 1662 d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~----~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL 1737 (1857)
+.+.+..+++.+++++++.+|||++|.+.+++..+++++. ..+.+++++||+|+||+|+|+|+|||++||+++|++
T Consensus 42 ~~~~~~v~~~~l~~l~~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil 121 (237)
T TIGR00186 42 GINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVIL 121 (237)
T ss_pred CCcEEEeCHHHHHHHhCCCCCCeEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEE
Confidence 3567777999999999999999999988766554555443 223478999999999999999999999999999999
Q ss_pred cCCC--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCC
Q 000208 1738 ADAN--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGI 1815 (1857)
Q Consensus 1738 ~~~~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GL 1815 (1857)
.+.+ +++++ +.|+|+|+.+|+|+.+. .++.++++.++++||+++|++.+++ ..+.+.++++|++||||||++|+
T Consensus 122 ~~~~~~~~~~~-~~r~s~Ga~~~l~~~~~--~~~~~~l~~l~~~g~~i~~~~~~~~-~~~~~~~~~~~~~lv~GnE~~Gl 197 (237)
T TIGR00186 122 PKRRSAPLNST-VVKTSSGAVEYVPLARV--TNLSRTITKLKESGFWTVGTDLDAQ-DTLYQVKLTKPLALVVGNEGEGV 197 (237)
T ss_pred CCCCcCCCCCc-eeeeeccccceeEEEEe--CCHHHHHHHHHHCCCEEEEEecCCC-ccccccccCCCEEEEECCCCCCc
Confidence 9876 34444 44689999999999986 7999999999999999999997643 44677889999999999999999
Q ss_pred CHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhc
Q 000208 1816 PVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1816 S~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQr 1855 (1857)
|+++++.||.+|+|||.|.++|||||+|+||+|||+.||+
T Consensus 198 s~~~l~~~d~~v~IP~~g~~~SLNVsvAaaI~lye~~rqr 237 (237)
T TIGR00186 198 SRLIKENCDFLIKIPMAGKVDSLNVSVAAGILLFEIKRQR 237 (237)
T ss_pred CHHHHHhCCEEEEECCCCCCCcchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999985
No 4
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=100.00 E-value=5.1e-35 Score=326.03 Aligned_cols=190 Identities=22% Similarity=0.282 Sum_probs=166.6
Q ss_pred CCccccCHHHHHHHhcccCccchhhhhchhhh---hhHHHHhh-ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEec
Q 000208 1663 SSSFFGNREAYKQLLEIEKEDELFDQVLQARS---LAMETIRA-SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIA 1738 (1857)
Q Consensus 1663 ~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~---~sLe~l~~-~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~ 1738 (1857)
.+....+++.+++++++.+|||++|.+.+++. ..++++.. ...++++++|+|+||+|+|+|+|||++||+++|++.
T Consensus 48 i~~~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~NlGai~Rta~a~G~~~vi~~ 127 (244)
T PRK11181 48 IVIQLANRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVP 127 (244)
T ss_pred CcEEEeCHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEEC
Confidence 45667789999999999999999998865432 23444332 235699999999999999999999999999999998
Q ss_pred CCC--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCC
Q 000208 1739 DAN--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIP 1816 (1857)
Q Consensus 1739 ~~~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS 1816 (1857)
+.+ +++++.. |+|+||.+|+|+.++ +++.++++.+++.||+++|++.. ++.++.++++++|++||||||++|||
T Consensus 128 ~~~~~~~~~~~~-r~s~Ga~~~l~~~~~--~~~~~~l~~l~~~g~~i~~t~~~-~~~~~~~~~~~~~~alv~G~E~~Gls 203 (244)
T PRK11181 128 KDRSAQLNATAK-KVACGAAETVPLIRV--TNLARTMRMLQEKNIWIVGTAGE-ADHTLYQSKLTGPLALVMGAEGEGMR 203 (244)
T ss_pred CCCCCCCCCceE-EecCCHHHcCeEEEc--CCHHHHHHHHHHCCCEEEEEeCC-CCcchhhcCCCCCEEEEECCCCCCcC
Confidence 765 4555544 589999999999986 79999999999999999999864 56778889999999999999999999
Q ss_pred HHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1817 ~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
+++++.||.+|+|||.|.++|||||||+||+|||+.||++
T Consensus 204 ~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rqr~ 243 (244)
T PRK11181 204 RLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 243 (244)
T ss_pred HHHHHhCCEEEEEcCCCCCceeeHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999975
No 5
>PRK10864 putative methyltransferase; Provisional
Probab=100.00 E-value=3.1e-34 Score=332.79 Aligned_cols=190 Identities=22% Similarity=0.310 Sum_probs=167.6
Q ss_pred CCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhh--ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC
Q 000208 1663 SSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRA--SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA 1740 (1857)
Q Consensus 1663 ~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~--~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~ 1740 (1857)
.+..+.+++.+++++++++||||+|.+.++...+++.+.. ...+++||||+|+||+|+|+|+|||++||+++|++.+.
T Consensus 153 ~~v~~V~~~~l~kls~~~~hqGV~A~v~~~~~~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~ 232 (346)
T PRK10864 153 KAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA 232 (346)
T ss_pred CcEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCCCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCC
Confidence 4566779999999999999999999887655455655432 12468999999999999999999999999999999886
Q ss_pred CC-CCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHH
Q 000208 1741 NI-LHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDI 1819 (1857)
Q Consensus 1741 ~~-~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~el 1819 (1857)
.. .+++.+ ++|+|+.+++|+..+ +++.++++.+++.||+|++++... +.++.++++|+|++||||||+.|||+++
T Consensus 233 ~~~~~~kvv-RaS~Ga~~~v~i~~~--~nl~~~L~~lk~~G~~Iv~t~~~~-~~~l~~~~~~~k~aLV~GnE~~GLs~~v 308 (346)
T PRK10864 233 ALLESGAAI-RTAEGGAEHVQPITG--DSFVDVLDDFRQAGYTIVTTSSHK-GTPLFKASLPAKMVLVLGQEYDGLSDAA 308 (346)
T ss_pred CCCCchhHH-HHhcChhhcceEEEe--CCHHHHHHHHHHCCCEEEEEeCCC-CcchhhcccCCCeEEEECCCCCCCCHHH
Confidence 63 444544 589999999999885 799999999999999999998753 5789999999999999999999999999
Q ss_pred HHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1820 IHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1820 L~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
++.||.+|+|||.|.++|||||||+||+|||+.||+.
T Consensus 309 l~~~D~~V~IPm~G~veSLNVSvAaaI~LyE~~Rq~~ 345 (346)
T PRK10864 309 RQQGDLSVSIDGTGNVESLNVSVATGVLLAEWWRQNK 345 (346)
T ss_pred HHhCCEEEEECCCCCCCCeEHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999973
No 6
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=301.49 Aligned_cols=161 Identities=20% Similarity=0.372 Sum_probs=143.4
Q ss_pred hhhhHHHHhhc-cCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHH
Q 000208 1693 RSLAMETIRAS-RQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKH 1771 (1857)
Q Consensus 1693 R~~sLe~l~~~-r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e 1771 (1857)
|...+.++.+. .++++||+|+|+||+|+|+|+|||+|||+++|+++.+... .+...++|+||.+|+++... +++.+
T Consensus 5 r~~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~-~~~~~~~s~Ga~~wv~i~~~--~~~~~ 81 (229)
T PRK11081 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSR-MRTMGSTAAGSNSWVQVKTH--RTIGD 81 (229)
T ss_pred hHHhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCCc-cchhhhhcCCchheEEEEEe--CCHHH
Confidence 44455555543 3579999999999999999999999999999988764421 23455689999999999885 79999
Q ss_pred HHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHH
Q 000208 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEY 1851 (1857)
Q Consensus 1772 ~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEl 1851 (1857)
+++.+|+.||.|+|++..++++++.++++++|++||||||+.|||+++++.||.+|+|||.|.++|||||||+||+|||+
T Consensus 82 ~i~~lk~~g~~i~at~~~~~a~~l~~~d~~~p~alV~GnE~~GlS~e~l~~~D~~v~IPM~G~v~SLNVSvAaaIiLyE~ 161 (229)
T PRK11081 82 AVAHLKGQGMQILATHLSDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 161 (229)
T ss_pred HHHHHHhCCCEEEEEeCCCCCccHhHhcccCCeEEEECCCCCCCCHHHHhcCCCEEEEeCCCCCCceeHHHHHHHHHHHH
Confidence 99999999999999998778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 000208 1852 TRQQR 1856 (1857)
Q Consensus 1852 tRQrr 1856 (1857)
.||++
T Consensus 162 ~Rqr~ 166 (229)
T PRK11081 162 QRQRQ 166 (229)
T ss_pred HHhhc
Confidence 99985
No 7
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=99.97 E-value=4.4e-30 Score=268.90 Aligned_cols=145 Identities=27% Similarity=0.355 Sum_probs=130.6
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1707 FVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1707 LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
+-|||++++||+|+|+|+|||++||++++++.+.+ ...++.++++++|+.+++|+.+. +++.++++.+|+.| +++
T Consensus 2 ~~vvL~~v~dP~NlG~iiRta~afGv~~vi~~~~~~~~~~~~~~ra~~~~~~~~~~~~~--~~~~~~l~~l~~~g--v~~ 77 (153)
T TIGR00185 2 LNIVLYEPEIPPNTGNIARTCAATGTRLHLIEPLGFFLDDKRLKRAGLDYWEFVQLFYH--KSWEEFLEAEKPQK--LFA 77 (153)
T ss_pred eEEEEcCCCCCChHHHHHHHHHHhCCEEEEECCCCCCCccHHHHhhccchHhcCCeEEe--CCHHHHHHhCcCCC--EEE
Confidence 46899999999999999999999999888886443 45567777889999999999985 79999999999888 777
Q ss_pred EEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhC-CcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1786 LEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHML-DACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1786 te~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lc-D~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
++.. ++.++.+++++.|.+||||||++|||+++++.| |.+|+|||.|.++|||||+|+||+|||+.||++
T Consensus 78 ~~~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~~d~~v~IP~~g~~~SLNvavA~aI~lye~~rq~~ 148 (153)
T TIGR00185 78 LTKK-GTPAHSQVTYKLGDYLMFGPETRGLPQSILDNMMEQKIRIPMTNNVRSLNLSNSVAIVVYEAWRQLG 148 (153)
T ss_pred EeCC-CCCcceeeccCCCCEEEECCCCCCCCHHHHhhCCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHccC
Confidence 7764 577788889999999999999999999999999 999999999999999999999999999999975
No 8
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=99.96 E-value=5e-30 Score=262.44 Aligned_cols=140 Identities=29% Similarity=0.496 Sum_probs=122.6
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCC--CCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANI--LHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSV 1783 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~--~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~I 1783 (1857)
+++||++++++|+|+|+|+|||++||+++|+++++.. ...+.+.++|+|+.+|+|+... ++++++++.++..||++
T Consensus 1 ~l~vvl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r~s~g~~~~~~~~~~--~~~~~~l~~~~~~g~~i 78 (142)
T PF00588_consen 1 MLIVVLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLRASAGAHEHLPIRRV--DDLEEALKDLKENGYTI 78 (142)
T ss_dssp SEEEEEES-SSHHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHHHTTTGHHCSHEEEE--SSHHHHHHHHHHTTEEE
T ss_pred CEEEEEeCCCCcCcHHHHHHHHHHhCCchhheeccccccccccccccccCChhhhhheeee--ehhhhhccccccccccc
Confidence 3789999999999999999999999999999987442 3445566789999999998775 89999999999999999
Q ss_pred EEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHH
Q 000208 1784 LGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALW 1849 (1857)
Q Consensus 1784 VAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLY 1849 (1857)
+|++. ++.++.++++|+|++||||||+.|||+++++.||.+|+|||.|.++|||||+|+||+||
T Consensus 79 ~~~~~--~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~~~~~SLNva~A~~I~ly 142 (142)
T PF00588_consen 79 VATSP--GATPLYELDFPKKVALVFGNESRGLSEEVLELCDHRVSIPMYGGVDSLNVAVAAAIALY 142 (142)
T ss_dssp EEEST--TSCEGGGSHTTSSEEEEEEBTTTBS-HHHHHTSSEEEE---STTSSS--HHHHHHHHHH
T ss_pred ceeee--ccccccccccccceEEEEcCcCCCCCcccccccceEEEEcCCCCCCeeEHHHHHHHHHC
Confidence 99997 67899999999999999999999999999999999999999999999999999999998
No 9
>PRK10358 putative rRNA methylase; Provisional
Probab=99.96 E-value=1.1e-28 Score=259.99 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=124.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1707 FVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1707 LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
+.|||++++||+|+|+|+|||+|||++.+++.+.+ ++++|.+|+++++...|+++.. +.++.++++.. .++.+++
T Consensus 2 ~~ivL~~~~dPgNlGti~Rta~a~G~~~viv~~~~d~~~~k~~raag~~~~~~~~~~~--~~~l~~~l~~~--~~~~v~~ 77 (157)
T PRK10358 2 LNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTR--HHDYAAFLEAE--NPQRLFA 77 (157)
T ss_pred eEEEEeCCCCcChHHHHHHHHHHhCCEEEEECCCCCCCChHHHHhcccccccceeeEE--cCCHHHHHHhC--CCceEEE
Confidence 46899999999999999999999999888885544 6788999875555556666655 47899888743 3589999
Q ss_pred EEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHh--CCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1786 LEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM--LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1786 te~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~l--cD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
++.. ++..+.+.+++++.+||||||++|||+++++. ||.+|+|||.|.++|||||+|+||+|||+.||+++
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~lvfGnE~~GLs~~~~~~~~~d~~v~IPm~~~~eSLNvAvA~aI~lyE~~rqr~~ 150 (157)
T PRK10358 78 LTTK-GTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGY 150 (157)
T ss_pred EeCC-CCCCccccccCCCcEEEECCCCCCCCHHHHhcCCCCeEEEEcCCCCCccchHHHHHHHHHHHHHHhhcC
Confidence 9874 45566677789999999999999999999998 89999999999999999999999999999999864
No 10
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=99.92 E-value=2.2e-24 Score=239.96 Aligned_cols=143 Identities=19% Similarity=0.252 Sum_probs=121.6
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
.+.|||+++++|+|+|+|+|+|++||++++++++++....+.+.++|+||.++++..++ +++++++++.. + .++|
T Consensus 3 ~i~vvL~~~~~p~NiGaiaR~~~~fG~~~l~lv~p~~~~~~~a~~~a~ga~~~l~~~~v-~~~l~eal~~~---~-~vv~ 77 (233)
T TIGR00050 3 NIRIVLVEPSHSGNIGSIARAMKNMGLTELCLVNPKSHLEEEAYALAAGARDILDNAKV-VDDLDEALDDC---D-LVVG 77 (233)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHhCChHHhhccCEE-ECCHHHHHhcC---C-EEEE
Confidence 47899999999999999999999999999999998754445555689999999998776 58999988643 3 5888
Q ss_pred EEecCCCCCCccc------------cCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1786 LEQTANSIPLDQY------------MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1786 te~t~gSv~L~d~------------~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
++.+ +..+.+. ++.+|++||||||+.||+++.++.||.+|+|||.|.++|||||+|++|++||+.+
T Consensus 78 tt~~--~~~~~~~~~~~~~~~~~~~~~~~~~aLvFG~E~~GL~~~~l~~cd~~v~IP~~~~~~SLNla~Av~I~lye~~~ 155 (233)
T TIGR00050 78 TSAR--SRNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLTNEELLKCHVLVSIPTSEEYPSLNLSHAVAVILYELRM 155 (233)
T ss_pred ECCC--cCCCCCCcCCHHHHHHHHHhhcCCEEEEECCCCCCCCHHHHHhCCEEEEecCCCCCCeeeHHHHHHHHHHHHHH
Confidence 8753 3333332 2457899999999999999999999999999999999999999999999999988
Q ss_pred hc
Q 000208 1854 QQ 1855 (1857)
Q Consensus 1854 Qr 1855 (1857)
++
T Consensus 156 ~~ 157 (233)
T TIGR00050 156 AF 157 (233)
T ss_pred hh
Confidence 63
No 11
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=99.90 E-value=1.9e-23 Score=234.21 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=118.3
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
.+.|||++++||+|+|+|+|+|++||++++++++++........++|+||.+.++...+ +++++++++.. ..+||
T Consensus 4 ~i~vVLv~~~~pgNiGaiaRa~~~fG~~~l~lv~p~~~~~~~a~~~a~GA~~~l~~a~i-~~~l~eal~~~----~~vva 78 (245)
T PRK15114 4 NIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATI-VDTLDEALAGC----SLVVG 78 (245)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeCCCCCCcCHHHHHcCCchhhcccCeE-ecCHHHHHhcC----CEEEE
Confidence 47899999999999999999999999999999998743323345589999987766665 47888877543 36999
Q ss_pred EEecCCCCCCc------------cccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1786 LEQTANSIPLD------------QYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1786 te~t~gSv~L~------------d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
++.+.+..... ...++++++||||||+.||+++.++.||..|+|||.|.++|||||+|++|++||+.+
T Consensus 79 tt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~~v~IP~~~~~~SLNla~AvaI~lYE~~~ 158 (245)
T PRK15114 79 TSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRM 158 (245)
T ss_pred EcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCcccHHHHHHHHHHHHHH
Confidence 98654322111 123568899999999999999999999999999999999999999999999999876
Q ss_pred h
Q 000208 1854 Q 1854 (1857)
Q Consensus 1854 Q 1854 (1857)
.
T Consensus 159 ~ 159 (245)
T PRK15114 159 A 159 (245)
T ss_pred H
Confidence 4
No 12
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.8e-23 Score=234.59 Aligned_cols=189 Identities=22% Similarity=0.235 Sum_probs=143.5
Q ss_pred CCCccccCHHHHHHHhcccCccchhhhhchhhhhh----HHHH---hhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCc
Q 000208 1662 SSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLA----METI---RASRQQFVLVASLIDRIPNLAGLARTCEVFKASG 1734 (1857)
Q Consensus 1662 d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~s----Le~l---~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdg 1734 (1857)
++..+..+..+++.+++..+|+|+.+.+.+|-... +... ....-++++|+|+|+||+|+|+|+|||+|||.++
T Consensus 166 g~~i~kVks~d~K~wSsLvSP~svmaIf~~P~d~hl~k~~a~~q~~~s~~lp~~lvcdnirdpgnlgti~rsaaa~~cs~ 245 (371)
T KOG2506|consen 166 GIRIVKVKSLDMKKWSSLVSPESVMAIFLMPIDLHLDKDIATDQNKWSPSLPRVLVCDNIRDPGNLGTIVRSAAAFNCSG 245 (371)
T ss_pred CeeEEeccHHHHHHHhcccCCcchhhhccCcchhchhhhHHHHHhccCCCCCeEEEeccCCCCcchHHHHHHHhhCCCcc
Confidence 34556678999999999999999999886662211 1111 1233578999999999999999999999999999
Q ss_pred EEecCCC--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhC--CCEEEEEEecCCCCCCccc-c----CCCCEE
Q 000208 1735 LAIADAN--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHE--GFSVLGLEQTANSIPLDQY-M----FPKKTV 1805 (1857)
Q Consensus 1735 VIL~~~~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~--Gy~IVAte~t~gSv~L~d~-~----fpkKvA 1805 (1857)
+++..+| +|++|++| +++||.|.+|+.-..++.+.-++...... +..+.++.++ -++.+++ + ...+.+
T Consensus 246 v~lt~gccdpwe~kalr-ag~ga~fr~pi~~~~w~~l~l~~pp~~ad~c~~~~a~t~qr--~~~~~k~~e~ad~~~ap~~ 322 (371)
T KOG2506|consen 246 VFLTPGCCDPWEDKALR-AGRGASFRLPIVSGNWNHLKLLEPPFQADLCAGHPATTTQR--LKPVSKLVEFADSLAAPLC 322 (371)
T ss_pred eeecCCcCCccchhhhh-ccCCcceecceecCchhhhhccCChhHHhhhcCchHhhhhh--hccchhhhHHHhhccCceE
Confidence 9999998 78999987 89999999999975333333222222222 2223333332 2332221 1 247899
Q ss_pred EEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHh
Q 000208 1806 LVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1806 LVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQ 1854 (1857)
||+|.|++|+|++..+.|. .|.|||.|+++|||||+|++|+|||+.|+
T Consensus 323 liigge~~gvseea~~~~~-lvgip~a~g~dslnva~a~~illfel~r~ 370 (371)
T KOG2506|consen 323 LIIGGEGNGVSEEARKVCV-LVGIPMAGGFDSLNVAVAGGILLFELQRL 370 (371)
T ss_pred EEEccCcCCcCHHHHHHHH-HcCCcccCCcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999986 57799999999999999999999999886
No 13
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.4e-22 Score=207.04 Aligned_cols=147 Identities=28% Similarity=0.385 Sum_probs=130.7
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC-CCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1707 FVLVASLIDRIPNLAGLARTCEVFKASGLAIADA-NILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1707 LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~-~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
+-+||.+++-|+|+|+|+|||+++|+.-.++-+- ..+++|.++||++..+..+.+.+. ++++++++..+. |-++++
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~tga~LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h--~s~e~fl~~~~~-~~rl~~ 79 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAATGAELHLIEPLGFDLDDKRLKRAGLDYHEKASLTEH--DSLEAFLEAEPI-GGRLFA 79 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhcCCeEEEEccCCCccchhhhhhcccchHhhcceEEe--CCHHHHHhhccC-CceEEE
Confidence 5688889999999999999999999975555332 377899999999999999999985 899999998876 789999
Q ss_pred EEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCC-cEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1786 LEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLD-ACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1786 te~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD-~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
++. .++.++.+..|++...++||.|..|||+++++... .+++|||.+.+||||+|+++||++||..||.+|
T Consensus 80 ~tt-~~~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNLsnsvavv~yEa~RQ~~~ 151 (155)
T COG0219 80 LTT-KGTTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNLSNTVAVVLYEALRQLGF 151 (155)
T ss_pred EEe-ccccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccCCCCccchHHHHHHHHHHHHHHHhCC
Confidence 985 57889999999999999999999999999998754 569999999999999999999999999999875
No 14
>PRK10433 putative RNA methyltransferase; Provisional
Probab=99.87 E-value=5.2e-22 Score=220.73 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=121.1
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
.+.|||.++++|+|+|+++|+|++||++++++++++...+...+++++||..+++..++ +++++++++.+ + .++|
T Consensus 2 ~i~vVLv~p~~p~NiGaiaRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v-~~tL~eAl~d~---~-~vig 76 (228)
T PRK10433 2 RLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKV-FDTLAEALHDV---D-FTVA 76 (228)
T ss_pred ceEEEEEcCCCCccHHHHHHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceE-ECCHHHHHHhC---C-eEEE
Confidence 36789999999999999999999999999999988866566666789999999998886 58999998764 5 5666
Q ss_pred EEecCCCC--CCcc----------c-cCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 000208 1786 LEQTANSI--PLDQ----------Y-MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT 1852 (1857)
Q Consensus 1786 te~t~gSv--~L~d----------~-~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYElt 1852 (1857)
++...+.. ++.. . ++.++++||||+|+.||+++.++.||..|+|||.|.++|||||+|++|++||+.
T Consensus 77 ttar~~~~~~~~~~p~~~~~~l~~~~~~~~~~alvfG~E~~Gl~~~~l~~c~~~~~IP~~~~~~SLNla~A~~i~~ye~~ 156 (228)
T PRK10433 77 TTARSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLA 156 (228)
T ss_pred EccCCCCCCCcccCHHHHHHHHHhhhcccCCEEEEECCCCCCCCHHHHHhCCcEEEecCCCCCcceeHHHHHHHHHHHHH
Confidence 66543321 1111 1 134789999999999999999999999999999999999999999999999987
Q ss_pred Hh
Q 000208 1853 RQ 1854 (1857)
Q Consensus 1853 RQ 1854 (1857)
+.
T Consensus 157 ~~ 158 (228)
T PRK10433 157 GL 158 (228)
T ss_pred Hh
Confidence 64
No 15
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=201.72 Aligned_cols=169 Identities=21% Similarity=0.316 Sum_probs=146.1
Q ss_pred CHHHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchh
Q 000208 1669 NREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQ 1747 (1857)
Q Consensus 1669 see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~ 1747 (1857)
+.+.++.++++..|+|++-. ..+.+++|.+.||+|+|+|+|+|++||++++.++... ....+.
T Consensus 90 s~h~L~~~t~~r~h~g~~le----------------asl~vylde~tDp~n~gaI~rsA~~lg~~~v~lv~~n~s~lS~~ 153 (271)
T KOG0838|consen 90 SKHDLNSLTDFRPHNGILLE----------------ASLCVYLDEVTDPQNIGAIIRSAYFLGADGVLLVKGNSSPLSPV 153 (271)
T ss_pred ChhhHHHHHhhccccceEEe----------------eEEEeeccCccCCcchHHHHHhHHHhcCCceEEEeccCCCCchh
Confidence 66778888888888887532 2389999999999999999999999999999998765 344577
Q ss_pred HHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCC------CCCCccccCCCCEEEEECCCCCCCCHHHHH
Q 000208 1748 FQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTAN------SIPLDQYMFPKKTVLVLGREKEGIPVDIIH 1821 (1857)
Q Consensus 1748 vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~g------Sv~L~d~~fpkKvALVLGNEg~GLS~elL~ 1821 (1857)
++++|+||.+|+|+.++ ++-.++++..+++|+.++++....+ ...+......+|+++|+|||+.|+++.++.
T Consensus 154 vskss~gale~l~I~q~--~~~~efl~vsvaaG~~l~~t~~~~~~~~~~~~~~l~~~~~~~Pv~lv~Gneg~Gi~~~vl~ 231 (271)
T KOG0838|consen 154 VSKSSAGALEVLPIRQV--DNPLEFLNVSVAAGIRLHGTCSWAPASKTISAVSLKFIDPEEPVALVLGNEGAGIRPGVLE 231 (271)
T ss_pred HHHhhhchhheeeHHHc--CCHHHHHHHHHhCceEEEEeecCcCCcccccchhhhhcCCCCCeEEEecccccccChhhhh
Confidence 88899999999999996 7899999999999999999875443 345666677899999999999999999999
Q ss_pred hCCcEEEEcCC------CCCCcccHHHHHHHHHHHHHHhc
Q 000208 1822 MLDACIEIPQL------GVVRSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1822 lcD~~V~IPM~------G~VrSLNVAVAAAIlLYEltRQr 1855 (1857)
.||..+.||+. +.++||||+||+++++|++..++
T Consensus 232 ~~d~~~si~~n~~~~d~~~v~SlNvSvaa~ll~~~~~~~k 271 (271)
T KOG0838|consen 232 LCDLRVSIPGNGFEKDNGAVDSLNVSVAAGLLLYHFLNEK 271 (271)
T ss_pred ccceeEecCCCccccCCcceeeccchHHHHHHHHHHhhcC
Confidence 99999999993 24799999999999999998763
No 16
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.1e-17 Score=186.79 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=118.6
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLG 1785 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVA 1785 (1857)
.+.|||-.++.|+|+|+++|.++.||++.+++++++...+.+.+..|+||..-+.-.++ ++++++++..+. .++|
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i-~~tL~eAl~d~~----~v~a 78 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKI-VDTLEEALADCD----LVVA 78 (242)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCee-ecCHHHHhcCCC----EEEE
Confidence 45677778999999999999999999999999998865555566679999999999888 799999987552 6777
Q ss_pred EEecCCCCCCccccC-------------CCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 000208 1786 LEQTANSIPLDQYMF-------------PKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT 1852 (1857)
Q Consensus 1786 te~t~gSv~L~d~~f-------------pkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYElt 1852 (1857)
|+.+.... ...... .+|++||||+|..||+.+.++.||..|+||+.+.+.|||+|+|++|++||+.
T Consensus 79 Ttar~r~~-~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p~Y~sLNLa~AV~ii~YEl~ 157 (242)
T COG0565 79 TTARSRDL-LRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVLVTIPANPDYPSLNLAQAVQVILYELR 157 (242)
T ss_pred eccccCcc-cccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEEEecCCCCccccccHHHHHHHHHHHHH
Confidence 77432211 111111 2699999999999999999999999999999999999999999999999997
Q ss_pred H
Q 000208 1853 R 1853 (1857)
Q Consensus 1853 R 1853 (1857)
+
T Consensus 158 ~ 158 (242)
T COG0565 158 K 158 (242)
T ss_pred H
Confidence 6
No 17
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=97.33 E-value=0.0013 Score=72.52 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=80.9
Q ss_pred HHHHHHHHhCCCcEEecCCCCCCchhHHh--hcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCC--CCCcc
Q 000208 1722 GLARTCEVFKASGLAIADANILHDKQFQL--ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANS--IPLDQ 1797 (1857)
Q Consensus 1722 AIiRTAeAFGVdgVIL~~~~~~~~K~vRr--aSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gS--v~L~d 1797 (1857)
-++|||-+||+++++++.+..-....+++ .-=|..|.+.+. +++.+++++.+..| .++-+..++.. ..+.+
T Consensus 21 hvartARafGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~----~s~~~~i~~~k~~G-~vvhLtmyga~~~~~~~~ 95 (176)
T PRK03958 21 HVGLTARALGADKIILASNDEHVKESVEDIVERWGGPFEVEVT----KSWKKEIREWKDGG-IVVHLTMYGENIQDVEPE 95 (176)
T ss_pred HHHHHHHHcCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEc----CCHHHHHHHHHhCC-cEEEEEEecCCccchHHH
Confidence 48999999999999998753111111111 122666663333 69999999998655 55555544211 12222
Q ss_pred cc----CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1798 YM----FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1798 ~~----fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
+. -.+|..+||| +.|+|+++.+.||..|. .|..+= -|-.|+||+|-.+..
T Consensus 96 ir~~~~~~~p~LIvvG--g~gvp~evye~aDynlg---vg~qpH-SvrAAlAI~LDRL~~ 149 (176)
T PRK03958 96 IREAHRKGEPLLIVVG--AEKVPREVYELADWNVA---VGNQPH-SEVAALAVFLDRLFE 149 (176)
T ss_pred HHHhhccCCcEEEEEc--CCCCCHHHHhhCCEEec---cCCCCh-HHHHHHHHHHHHhcC
Confidence 21 1578999999 88999999999999993 344444 677888888876654
No 18
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=96.17 E-value=0.0075 Score=66.88 Aligned_cols=133 Identities=22% Similarity=0.276 Sum_probs=67.3
Q ss_pred CCCH--HHHHHHHHHhCCCcEEecCCCCCCchhHHh------hcCCCce------eeeEEEeccCCHHHHHHHHhh-CC-
Q 000208 1717 IPNL--AGLARTCEVFKASGLAIADANILHDKQFQL------ISVTAEK------WVPIVEVPVNSIKHFLERKKH-EG- 1780 (1857)
Q Consensus 1717 P~NL--GAIiRTAeAFGVdgVIL~~~~~~~~K~vRr------aSmGA~~------wLPI~eV~~~dL~e~Le~LK~-~G- 1780 (1857)
..|+ =-|.|+|..+|+.+.+++.+-.-...-+.+ -+-|+.+ -+..+++ .+++++++++..+ +|
T Consensus 25 vTNlDlHDIAR~~rTYgv~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~-~~sle~a~~~I~~~~G~ 103 (185)
T PF09936_consen 25 VTNLDLHDIARSARTYGVKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRV-VDSLEEAIEDIEEEEGK 103 (185)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEE-ESSHHHHHHHHHHHHSS
T ss_pred eccccHHhhhhhhhccCCcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhcc-HhhHHHHHHHHHHHhCC
Confidence 3454 459999999999999998752111111111 1233321 1223343 3689988887654 34
Q ss_pred -CEEEEEEecC--CCCCCccc-----cCCCCEEEEECCCCCCCCHHHHHhCCcEEE-EcCCCCCCcccHHHHHHHHHHHH
Q 000208 1781 -FSVLGLEQTA--NSIPLDQY-----MFPKKTVLVLGREKEGIPVDIIHMLDACIE-IPQLGVVRSLNVHVSGAIALWEY 1851 (1857)
Q Consensus 1781 -y~IVAte~t~--gSv~L~d~-----~fpkKvALVLGNEg~GLS~elL~lcD~~V~-IPM~G~VrSLNVAVAAAIlLYEl 1851 (1857)
-.+++|+... +..++.+. .-.+|+.|+||. +.||++++++.||..++ |-..|..+=|-|=.|+||+|=-+
T Consensus 104 ~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~LllFGT-GwGL~~ev~~~~D~iLePI~g~~~YNHLSVRsAvAIiLDRL 182 (185)
T PF09936_consen 104 RPLLVATSARKYPNTISYAELRRMLEEEDRPVLLLFGT-GWGLAPEVMEQCDYILEPIRGAGDYNHLSVRSAVAIILDRL 182 (185)
T ss_dssp --EEEE--SS--SS-B-HHHHHHHHHH--S-EEEEE---TT---HHHHTT-SEEB--TTTTSS-----HHHHHHHHHHHH
T ss_pred CCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEEEecC-CCCCCHHHHHhcCeeEcccccCCCCccchHHHHHHHHHHHH
Confidence 5677777542 22333222 136889999997 78999999999998776 43445678899999999998544
No 19
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=96.01 E-value=0.042 Score=58.83 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=94.5
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC--CC-C-chhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCC
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN--IL-H-DKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGF 1781 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~--~~-~-~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy 1781 (1857)
.+++|+.++..++-+=-+.|+|..||++.++++... .. + -+.+.+.+-- .-.|+... +++.++++-++.+-.
T Consensus 2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k--~G~~vlvf--~dL~DAlevL~P~v~ 77 (147)
T COG4080 2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFK--LGKPVLVF--PDLDDALEVLRPDVT 77 (147)
T ss_pred cEEEEEecCCchHHHHHHHHHHcccCccEEEEEecccHhhhhccHHHHHHHHH--hCCcEEEe--hhHHHHHHhcCCceE
Confidence 478999999999999999999999999999998643 11 1 1222222211 12566665 799999999986533
Q ss_pred EEEEEEecCCCCCCcccc-CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHh
Q 000208 1782 SVLGLEQTANSIPLDQYM-FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1782 ~IVAte~t~gSv~L~d~~-fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQ 1854 (1857)
-.++.+ +.+.+++.--. ..+++++||+.=..|+++..+++-+..++| ..+.+-++ .++||+|||+.+.
T Consensus 78 ll~~~~-~~~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~-ve~~VG~~---g~lAi~Lyell~~ 146 (147)
T COG4080 78 LLVGSA-SEGEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI-VEADVGEL---GALAIFLYELLKA 146 (147)
T ss_pred EEecCc-ccccccCCccccccceEEEEEecCCCCcChhhcccCCcEEEE-EeccchHH---HHHHHHHHHHHcc
Confidence 333322 22333322111 234889999988889999999977777777 44444333 5789999999763
No 20
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.55 E-value=0.28 Score=53.82 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=82.3
Q ss_pred HHHHHHHhCCCcEEecCCCC-CCchhHHh--hcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCcccc
Q 000208 1723 LARTCEVFKASGLAIADANI-LHDKQFQL--ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYM 1799 (1857)
Q Consensus 1723 IiRTAeAFGVdgVIL~~~~~-~~~K~vRr--aSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~ 1799 (1857)
++-||-|||++++++.+.+. .--..++. ..-|..|.+... .+|...++..++ |-.++-+++= +.++.++.
T Consensus 23 V~LtARAfGA~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~----~nw~~~i~~wk~-gG~vvHLTMY--G~~i~dv~ 95 (179)
T COG1303 23 VALTARAFGADGILLDGEEDEKVVESVEDVVERWGGPFFVKFG----VNWRKVIREWKE-GGIVVHLTMY--GLNIDDVI 95 (179)
T ss_pred hhhhhHhhCCceEEEcCcccHHHHHHHHHHHHhcCCCEEEEEc----ccHHHHHHHhhc-CCEEEEEEec--CCcchhhh
Confidence 67799999999999986541 11111111 245666655554 489999999988 7788877763 45665543
Q ss_pred -----CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1800 -----FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1800 -----fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
-.++..+|+|.|+ +|.++-++||..|.|-..+. | =-.|.||.|--+..
T Consensus 96 ~ei~~~~k~~lvvVGaeK--Vp~evYelADyNV~VgnQPH--S--EVaaLAvFLDRl~~ 148 (179)
T COG1303 96 DEIRESKKDVLVVVGAEK--VPGEVYELADYNVSVGNQPH--S--EVAALAVFLDRLFE 148 (179)
T ss_pred HHHHhcCCcEEEEEcccc--CCHHHhhhcccceecCCCcc--H--HHHHHHHHHHHHhC
Confidence 2455899999998 99999999999999866643 2 13466777766654
No 21
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=90.93 E-value=1.4 Score=53.71 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=80.5
Q ss_pred HHHHHHHhCCCcEEecCCCCCCchhHHh--hcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCcc---
Q 000208 1723 LARTCEVFKASGLAIADANILHDKQFQL--ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQ--- 1797 (1857)
Q Consensus 1723 IiRTAeAFGVdgVIL~~~~~~~~K~vRr--aSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d--- 1797 (1857)
++-||-|||++++++.+...---..++. ..-|..|.+... .+|...++.. .| .||-+++= +.++.+
T Consensus 21 v~l~ara~ga~~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~----~~~~~~~~~~--~g-~vvhltmy--g~~~~~~~~ 91 (339)
T PRK12703 21 VALTARAFGASSILVDERDETLENTIKKVVDNFGGSFEIKTG----IEWKSEFKKF--HG-IRVHLTMY--GRPIEDVID 91 (339)
T ss_pred HHHHHHHhcCCeeEecCCcHhHHHHHHHHHHhcCCCeEEEec----cCHHHHHHhc--CC-EEEEEecC--CCchHHHHH
Confidence 6779999999999998653211112222 245667766553 4888888766 35 88877763 455544
Q ss_pred -cc-CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1798 -YM-FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1798 -~~-fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
+. ..++..+|+|.|+ +|.++-+.||..|.|--.+.-+ ..|.||+|..+..
T Consensus 92 ~i~~~~~~~~~vvg~~k--vp~~~y~~ad~nv~v~~qphse----vaala~fld~~~~ 143 (339)
T PRK12703 92 EIRESGKDVMVLVGSEK--VPIEAYEIADYNVSVTNQPISE----VSALAIFLDRYFD 143 (339)
T ss_pred HHhccCCCEEEEECCCc--CCHHHHhhcccceeeCCCChHH----HHHHHHHHHHhcc
Confidence 33 3578999999998 9999999999999997665432 3567788876654
No 22
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.00 E-value=6 Score=43.58 Aligned_cols=134 Identities=20% Similarity=0.258 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHhCCCcEEecCCCCCCchhHHh------hcCCCc------eeeeEEEeccCCHHHHHHHH-hhCCC--EE
Q 000208 1719 NLAGLARTCEVFKASGLAIADANILHDKQFQL------ISVTAE------KWVPIVEVPVNSIKHFLERK-KHEGF--SV 1783 (1857)
Q Consensus 1719 NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRr------aSmGA~------~wLPI~eV~~~dL~e~Le~L-K~~Gy--~I 1783 (1857)
-+--|+|+|.+..+.+..++-+-......+.+ ..-|.. +-+.++++. ..+++.+++. |.+|- -+
T Consensus 30 D~HDIaR~artYeikgYyiV~pidAQ~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~-~~le~ViEdIEk~eG~rPLi 108 (190)
T COG4752 30 DLHDIARPARTYEIKGYYIVQPIDAQRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLA-YTLEEVIEDIEKEEGRRPLI 108 (190)
T ss_pred cHhhhcccccceeeccEEEEeecHHHHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHH-HHHHHHHHHHHhhcCCCceE
Confidence 45679999999999998887542111111111 111111 111222221 2455555554 33454 35
Q ss_pred EEEEecC--CCCCCccc-----cCCCCEEEEECCCCCCCCHHHHHhCCcEEE-EcCCCCCCcccHHHHHHHHHHHHHHh
Q 000208 1784 LGLEQTA--NSIPLDQY-----MFPKKTVLVLGREKEGIPVDIIHMLDACIE-IPQLGVVRSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1784 VAte~t~--gSv~L~d~-----~fpkKvALVLGNEg~GLS~elL~lcD~~V~-IPM~G~VrSLNVAVAAAIlLYEltRQ 1854 (1857)
++++.+. ++.++... .-.++..++||. |.|||+++++..|..++ |--.+...-|.|-+|+||++-.+...
T Consensus 109 ~~TsAr~~~N~isy~~lr~~I~e~dkp~LilfGT-GwGlpde~m~~sDYiLEPIra~sd~NHLSVRaAvAIIlDRLfge 186 (190)
T COG4752 109 VGTSARTYPNTISYSWLRNEIQERDKPWLILFGT-GWGLPDELMNTSDYILEPIRAASDWNHLSVRAAVAIILDRLFGE 186 (190)
T ss_pred EeccccccCCcccHHHHHHHHhhcCCcEEEEecC-CCCCCHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHHhcc
Confidence 6665432 22222221 124778888886 78999999999999877 55567788899999999999877644
No 23
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=69.60 E-value=5.2 Score=42.59 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCHHHHHHHHhhCCCEEEEEEecCCCCCCcc----cc-CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHH
Q 000208 1767 NSIKHFLERKKHEGFSVLGLEQTANSIPLDQ----YM-FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVH 1841 (1857)
Q Consensus 1767 ~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d----~~-fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVA 1841 (1857)
.++..+++..|+.|..|+-+++= +.++.+ +. -.++..+|+|.|+ +|.++-+.||..|.|--.+.-+ .
T Consensus 11 ~~w~~~i~~wK~~~G~VVHLTMY--G~~i~dvi~~Ir~~~~~~lvVVGaeK--VP~evYe~ADyNVaVgnQPHSE----V 82 (120)
T PF01994_consen 11 VSWKSYIREWKEKGGKVVHLTMY--GENIDDVIDEIRESCKDLLVVVGAEK--VPGEVYELADYNVAVGNQPHSE----V 82 (120)
T ss_dssp S-HHHHHHC----SSEEEEE-TT--SEEHHHCHHHHHHCTSEEEEEE-SS-----CCHHHHSSEEEESSSS---H----H
T ss_pred CCHHHHHHHhcccCCeEEEEEec--CCchHHHHHHHhccCCCEEEEECCCc--CCHHHHhhCCcceeeCCCChHH----H
Confidence 58999999999999999988763 455444 33 5688999999998 9999999999999997665422 3
Q ss_pred HHHHHHHHHHHH
Q 000208 1842 VSGAIALWEYTR 1853 (1857)
Q Consensus 1842 VAAAIlLYEltR 1853 (1857)
.|.||.|..+..
T Consensus 83 AALAvFLDrl~~ 94 (120)
T PF01994_consen 83 AALAVFLDRLFE 94 (120)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhcC
Confidence 577888877654
No 24
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=66.90 E-value=31 Score=36.43 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=59.2
Q ss_pred eEEEeccCCHHHHHHHHhhCCCEEEEEEecCCC-CCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcc
Q 000208 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANS-IPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSL 1838 (1857)
Q Consensus 1760 PI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gS-v~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSL 1838 (1857)
++... +|+.++++-++. -.|+.++..... ..+......+|+++||+....|.++..++.. ..|+|. +.-+-+
T Consensus 21 ~livl--pdl~DAiEvl~p--~~V~~i~~~~~~~~~~~~~~~~~rvllVf~G~d~gfsk~El~~g-~~v~~~--~v~~~i 93 (106)
T PF09895_consen 21 SLIVL--PDLKDAIEVLKP--DVVYLISRSGEEEEKLEFLKIEGRVLLVFSGSDPGFSKIELELG-EAVYIR--GVERDI 93 (106)
T ss_pred cEEEe--CCHHHHHHhcCC--cEEEEEcCcccccccccccCcCCcEEEEEeCCCCCCChhHhcCC-ceEEee--ccCcCc
Confidence 44443 799999999874 477777754332 2334456678999999999999999999984 456653 222345
Q ss_pred cHHHHHHHHHHHH
Q 000208 1839 NVHVSGAIALWEY 1851 (1857)
Q Consensus 1839 NVAVAAAIlLYEl 1851 (1857)
-.-..+||+||++
T Consensus 94 G~~g~~ai~Ly~L 106 (106)
T PF09895_consen 94 GPIGEAAIILYEL 106 (106)
T ss_pred ChHHHHHHHHhcC
Confidence 5557788999864
No 25
>PRK02135 hypothetical protein; Provisional
Probab=62.01 E-value=19 Score=41.53 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=68.7
Q ss_pred eEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhC----CcEEEEcCCCCC
Q 000208 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHML----DACIEIPQLGVV 1835 (1857)
Q Consensus 1760 PI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lc----D~~V~IPM~G~V 1835 (1857)
|-+.+.-.++++.++++ .+|+++|-+.. ++.++.+..+++..++|+| ...|+|++..+.. +..|.| +-
T Consensus 107 pGi~V~~~~fe~ll~~~-~e~~~l~~L~e--~G~~i~~~~~~~~~~FvLg-DH~~~~~ee~~~L~~~ga~~iSl----GP 178 (201)
T PRK02135 107 PGIYVRRRGFEDLLEEL-AEGKTLYYLHE--DGEDIRDVEFPENPVFVLG-DHIGFTEEEENLLKRLGAEKISL----GP 178 (201)
T ss_pred CCEEEecCCHHHHHHHH-hcCCcEEEEeC--CCCchhhccCCCCCEEEEe-CCCCCCHHHHHHHHHhCCeEEEe----Cc
Confidence 33344346899999998 78999998874 5788999999999999999 7889999987643 567776 33
Q ss_pred CcccHHHHHHHHHHHHHHh
Q 000208 1836 RSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1836 rSLNVAVAAAIlLYEltRQ 1854 (1857)
.+|=.+++.+++-+|+=+.
T Consensus 179 ~~l~AshcI~~vhn~LD~~ 197 (201)
T PRK02135 179 KMLHADHCITLIHNELDRR 197 (201)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 6899999999998888654
No 26
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=60.58 E-value=58 Score=36.02 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHhhCCchhh---hhhhhhhccCCCCccchHHHHHHHHHHHHhhchhhHHHHHhhhhhhhcccccc
Q 000208 1414 LPSVRQYLETFAITIYLKFPSLVA---EQLVPILRDYDMRPQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTS 1490 (1857)
Q Consensus 1414 lPSVRyYIEwFiI~il~k~P~lle---~~Llp~L~D~nlrpqvlsS~v~Iaa~VLl~~~~~~q~~~L~~lL~~IlPw~tS 1490 (1857)
.|.||--+=..+-=++.+||++++ +.+...|.|.+ |.+=...+.+..+.+.....+.+. +++..++--...
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~--~~VR~~al~~Ls~Li~~d~ik~k~----~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDED--PLVRKTALLVLSHLILEDMIKVKG----QLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCceeehh----hhhHHHHHHHcC
Confidence 367777776777788999999877 45666677776 555555565666666554333322 233444455588
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 000208 1491 HHHSLRGFTQLLVYQVLCK 1509 (1857)
Q Consensus 1491 h~~sVR~fAqllv~~iL~k 1509 (1857)
-+..||.+|..++..+.++
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999887775
No 27
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.65 E-value=29 Score=40.92 Aligned_cols=114 Identities=24% Similarity=0.282 Sum_probs=71.9
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC--CC--CC-ch-----hHHhhcCCC-----ceeeeEEEeccCCHH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA--NI--LH-DK-----QFQLISVTA-----EKWVPIVEVPVNSIK 1770 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~--~~--~~-~K-----~vRraSmGA-----~~wLPI~eV~~~dL~ 1770 (1857)
.+.++ -.+-++-++=-|+|-|.-+|++.++.... +. +. .+ ..++....| ..++|-+.. +.++.
T Consensus 79 ~i~l~-~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~-~~~~~ 156 (246)
T COG1385 79 KITLA-QAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKP-PESLK 156 (246)
T ss_pred eEEEE-EEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchhHHHHHHHHHHHHHHhcCCCcCCeeec-hhhHH
Confidence 34444 35668889999999999999999988653 21 12 11 233332222 236777765 56888
Q ss_pred HHHHHHhhCCCEEEEEEecCCCCCCcc-----ccCCCCEEEEECCCCCCCCHHHHHhC
Q 000208 1771 HFLERKKHEGFSVLGLEQTANSIPLDQ-----YMFPKKTVLVLGREKEGIPVDIIHML 1823 (1857)
Q Consensus 1771 e~Le~LK~~Gy~IVAte~t~gSv~L~d-----~~fpkKvALVLGNEg~GLS~elL~lc 1823 (1857)
++++.........+..+... ...... ...+++.++++|.|| |+|++.++..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~l 212 (246)
T COG1385 157 ELLKEIDDEDALKLIYEEKA-KEGLLALPLLEALPEGKVLLIIGPEG-GFSEDEIELL 212 (246)
T ss_pred HHHHhcccchhhhheecccc-ccccccchhhhcccCCcEEEEECCCC-CCCHHHHHHH
Confidence 88887764332333333222 222222 235799999999999 9999988653
No 28
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=55.42 E-value=1.3 Score=52.15 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=71.6
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEE------e
Q 000208 1715 DRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLE------Q 1788 (1857)
Q Consensus 1715 dDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte------~ 1788 (1857)
.+-.|.|..++.|..|+++.+..+.... +..+..+++....+.....|. ++.+. .
T Consensus 58 ~kR~~~~~~~~~~~~~~~~e~~~v~~~~------------------~~~~s~h~L~~~t~~r~h~g~-~leasl~vylde 118 (271)
T KOG0838|consen 58 GKRDCRGLLLQSATDFRSTEFELVLRRD------------------IEAVSKHDLNSLTDFRPHNGI-LLEASLCVYLDE 118 (271)
T ss_pred ccccceeeeeccccccCcceeeehhhhh------------------hhccChhhHHHHHhhccccce-EEeeEEEeeccC
Confidence 4456778888899999998887765431 111111334444433223332 22221 1
Q ss_pred cCCCCCCcc------ccCCCCEEEEECCCCCCCCHHHHH---hCCcEEEEcCCC-CCCcccHHHHHHHHHHH
Q 000208 1789 TANSIPLDQ------YMFPKKTVLVLGREKEGIPVDIIH---MLDACIEIPQLG-VVRSLNVHVSGAIALWE 1850 (1857)
Q Consensus 1789 t~gSv~L~d------~~fpkKvALVLGNEg~GLS~elL~---lcD~~V~IPM~G-~VrSLNVAVAAAIlLYE 1850 (1857)
..+...+-. +-.-+++.++-||+ .++++.+.+ .|+..+.||+.+ ..+||||++|+||.++.
T Consensus 119 ~tDp~n~gaI~rsA~~lg~~~v~lv~~n~-s~lS~~vskss~gale~l~I~q~~~~~efl~vsvaaG~~l~~ 189 (271)
T KOG0838|consen 119 VTDPQNIGAIIRSAYFLGADGVLLVKGNS-SPLSPVVSKSSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHG 189 (271)
T ss_pred ccCCcchHHHHHhHHHhcCCceEEEeccC-CCCchhHHHhhhchhheeeHHHcCCHHHHHHHHHhCceEEEE
Confidence 001111100 11247899999999 899998875 478899999986 57999999999987754
No 29
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=50.15 E-value=51 Score=37.16 Aligned_cols=127 Identities=20% Similarity=0.347 Sum_probs=83.0
Q ss_pred CCHHH-HHHHHHHhCCCcEEecCCCCCCch-----------------hHHhhcCCC-ceeeeEEEeccCCHHHHHHHHhh
Q 000208 1718 PNLAG-LARTCEVFKASGLAIADANILHDK-----------------QFQLISVTA-EKWVPIVEVPVNSIKHFLERKKH 1778 (1857)
Q Consensus 1718 ~NLGA-IiRTAeAFGVdgVIL~~~~~~~~K-----------------~vRraSmGA-~~wLPI~eV~~~dL~e~Le~LK~ 1778 (1857)
.++|- |-|.+-+|++..+++......+.. .+++-|-|- ...+|+.. -|+-.+... .
T Consensus 17 r~mGerIGRaaQ~FEV~eLiiap~~~vda~eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V---~DlYQ~vRd--R 91 (173)
T PF14419_consen 17 RKMGERIGRAAQAFEVKELIIAPKEKVDAYELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYV---QDLYQVVRD--R 91 (173)
T ss_pred HHHHHHHhHHHhhcchheEEEeccCccCHHHHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeH---HHHHHHHHh--c
Confidence 46776 899999999999999876543322 223334443 25566654 367777766 3
Q ss_pred CCCEEEEEEecCCCCCCcc--------ccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHH
Q 000208 1779 EGFSVLGLEQTANSIPLDQ--------YMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWE 1850 (1857)
Q Consensus 1779 ~Gy~IVAte~t~gSv~L~d--------~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYE 1850 (1857)
.|-.+|.+++.+ .++.+ +...+++.+++|+ ..|||.-+...||.+|-+--.-.+..=-+.-|+.|++|.
T Consensus 92 ~~~~lIvtdPkG--~~is~vk~~L~~~~r~~~eV~v~iGS-ReGiP~GlfRfAd~VvDlaP~~t~aTe~~ipsaliAl~~ 168 (173)
T PF14419_consen 92 KGEPLIVTDPKG--DPISEVKDKLAEDLRYAKEVVVFIGS-REGIPRGLFRFADYVVDLAPGVTFATEHAIPSALIALWT 168 (173)
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHhhCcEEEEEEEc-ccCCChhHHHHhhhhhhcCCceEEeehhhhHHHHHHHHH
Confidence 567889898753 44443 3345677888886 569999999999998876544333334445556666665
Q ss_pred HH
Q 000208 1851 YT 1852 (1857)
Q Consensus 1851 lt 1852 (1857)
..
T Consensus 169 v~ 170 (173)
T PF14419_consen 169 VY 170 (173)
T ss_pred HH
Confidence 43
No 30
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=44.16 E-value=8.4 Score=36.25 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=23.2
Q ss_pred CCCccccCHHHHHHHhcccCccchhhhhchhh
Q 000208 1662 SSSSFFGNREAYKQLLEIEKEDELFDQVLQAR 1693 (1857)
Q Consensus 1662 d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R 1693 (1857)
+.+....+++.+++++++.+|||++|.+.+++
T Consensus 43 ~i~v~~v~~~~l~~ls~~~~hQGv~a~v~~~~ 74 (76)
T PF08032_consen 43 GIPVYEVSKKVLDKLSDTENHQGVVAVVKPPQ 74 (76)
T ss_dssp T-EEEEE-HHHHHHCTTTSS-TTEEEEEE---
T ss_pred CCeEEEeCHHHHHHHcCCCCCCeEEEEEeCCC
Confidence 46677889999999999999999999875543
No 31
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=38.62 E-value=1.8e+02 Score=33.77 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=64.9
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC--CC---Cch------hH----HhhcC-CCceeeeEEEeccCC
Q 000208 1705 QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN--IL---HDK------QF----QLISV-TAEKWVPIVEVPVNS 1768 (1857)
Q Consensus 1705 ~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~--~~---~~K------~v----RraSm-GA~~wLPI~eV~~~d 1768 (1857)
.++.++.. +-++..+--+++.|.-+||+.++..... .. ..+ .. +.|+. +-.-|+|-... +.+
T Consensus 74 ~~l~l~~a-l~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~-~~~ 151 (234)
T PRK11713 74 LRLTLAQA-LPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRP-PIS 151 (234)
T ss_pred CeEEEEEe-ecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcC-cCC
Confidence 34555554 4478899999999999999999986432 11 111 11 11221 22347888775 467
Q ss_pred HHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhC
Q 000208 1769 IKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHML 1823 (1857)
Q Consensus 1769 L~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lc 1823 (1857)
+.++++..... .+ .+ .....++. .-++++++++|.|| |.+++.++..
T Consensus 152 ~~~~l~~~~~~--~~--~~--~~~~~l~~-~~~~~i~viIGPEG-Gfs~~Ei~~l 198 (234)
T PRK11713 152 LKEFLEELLPA--DL--KA--GLKLVLHP-EAGGKVLLLIGPEG-GFSPEEIELL 198 (234)
T ss_pred HHHHHhhcccc--cc--ch--hhhhhcCc-CCCCeEEEEECCCC-CCCHHHHHHH
Confidence 88877654321 11 00 00111111 12346899999999 9999987654
No 32
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=37.72 E-value=52 Score=37.85 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=59.3
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-C-CC---c------hhHHhhc-----CCCceeeeEEEeccCCHH
Q 000208 1707 FVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-I-LH---D------KQFQLIS-----VTAEKWVPIVEVPVNSIK 1770 (1857)
Q Consensus 1707 LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~-~~---~------K~vRraS-----mGA~~wLPI~eV~~~dL~ 1770 (1857)
+.++. .+-++..+--+++-|.-+|++.++..... . .. . ...++.. ..-..++|-... +.++.
T Consensus 63 i~L~~-al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~-~~~l~ 140 (225)
T PF04452_consen 63 ITLAQ-ALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEP-PISLK 140 (225)
T ss_dssp EEEEE-E--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEE-EEEHH
T ss_pred EEEEE-EEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeec-cccHH
Confidence 55554 45678999999999999999999986432 2 11 1 1111211 112346676654 46899
Q ss_pred HHHHHHhhCCCEEEEEEecCCCCCCcccc--CCC----CEEEEECCCCCCCCHHHHHhCC
Q 000208 1771 HFLERKKHEGFSVLGLEQTANSIPLDQYM--FPK----KTVLVLGREKEGIPVDIIHMLD 1824 (1857)
Q Consensus 1771 e~Le~LK~~Gy~IVAte~t~gSv~L~d~~--fpk----KvALVLGNEg~GLS~elL~lcD 1824 (1857)
++++....... +++-+.. ...+.... ... ++++++|.|| |.+++.++..-
T Consensus 141 ~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~~~ 196 (225)
T PF04452_consen 141 ELLEDIPDEDL-LILDEDE--EPSLSSLSEILNSEKSFSIAIIIGPEG-GFSEEEIEFLK 196 (225)
T ss_dssp HHHHHSSECSE-EEE-TTT--TCBGGGCSHTTSCHHC-EEEEEE--TT----HHHHHHHH
T ss_pred HHhhccccCCE-EEEcccc--cccccchhhhhhcccCCcEEEEECCCC-CCCHHHHHHHH
Confidence 99887655443 4443321 22222222 112 8999999999 99999887543
No 33
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=37.68 E-value=2.6e+02 Score=35.32 Aligned_cols=97 Identities=24% Similarity=0.402 Sum_probs=56.5
Q ss_pred ccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCchhh---hhhhhhhccC---CCCccchHHHHHHHHHHH
Q 000208 1392 FVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVA---EQLVPILRDY---DMRPQALSSYVFIAANVI 1465 (1857)
Q Consensus 1392 ~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~lle---~~Llp~L~D~---nlrpqvlsS~v~Iaa~VL 1465 (1857)
+++..++..+.+ ++..--|.-|.|+..+..+|+.++|..-. ..+...|-+| ..++.-++..+-|.++++
T Consensus 129 ~i~~~fi~~Ll~-----l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 129 YIDQKFIKKLLE-----LFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp TS-HHHHHHHHH-----TTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 344555444333 45567788899999999999999986532 2222233221 236777888999999988
Q ss_pred HhhchhhHHHHHhhhhhhhccccccCCc
Q 000208 1466 LHASKAVQFRHLEDLLPPIVPLLTSHHH 1493 (1857)
Q Consensus 1466 l~~~~~~q~~~L~~lL~~IlPw~tSh~~ 1493 (1857)
.+-.......|..-+...++|...+.+.
T Consensus 204 ~gf~~plk~eh~~fl~~vllPLh~~~~~ 231 (409)
T PF01603_consen 204 NGFAVPLKEEHKQFLRKVLLPLHKSPHL 231 (409)
T ss_dssp TT--SS--HHHHHHHHHTTGGGGGSTGG
T ss_pred hccCCCCcHHHHHHHHHHHHHHhcCCcH
Confidence 8644322223334455678888776543
No 34
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=36.33 E-value=3.1e+02 Score=34.47 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCchhhhhhhccCcHHHHHHHHHHHHHHhhhccc-ChhHHHhHHHHHHHhh-hcCCChhHHHHHHHHH
Q 000208 1348 KLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFV-DNDIVGQVTHFLHISL-YRNNLPSVRQYLETFA 1425 (1857)
Q Consensus 1348 klf~~~LL~~~~~d~dlsK~~y~~nS~~HR~KlRlWQtLCvLsp~l-~~d~v~~v~d~I~~aL-~~nNlPSVRyYIEwFi 1425 (1857)
..++.+++....+..+ ...|.-..|+||+|..+. +++.+..+.+.+.... ...+.+.-..-+|.++
T Consensus 188 ~~ll~~l~~~~~~~~~------------~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (415)
T PF12460_consen 188 EELLQSLLNLALSSED------------EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILI 255 (415)
T ss_pred HHHHHHHHHHHHcCCC------------hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHH
Q ss_pred H----HHHhhCCch--hhhhhhhhhccCCCCccchHHHHHHHHH--HHHhhch--hhH----HHHHhhhhhhhccccccC
Q 000208 1426 I----TIYLKFPSL--VAEQLVPILRDYDMRPQALSSYVFIAAN--VILHASK--AVQ----FRHLEDLLPPIVPLLTSH 1491 (1857)
Q Consensus 1426 I----~il~k~P~l--le~~Llp~L~D~nlrpqvlsS~v~Iaa~--VLl~~~~--~~q----~~~L~~lL~~IlPw~tSh 1491 (1857)
- ++++.+|.- +.+.|+.+|.|...+..+..+.-.+..- -++...+ .+. ++.+..+++.++.-..++
T Consensus 256 Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 256 WITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Q ss_pred CchhHHHHHHHHHHHHhhh
Q 000208 1492 HHSLRGFTQLLVYQVLCKL 1510 (1857)
Q Consensus 1492 ~~sVR~fAqllv~~iL~k~ 1510 (1857)
....|.-...++..+++..
T Consensus 336 ~~~~k~~yL~ALs~ll~~v 354 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNV 354 (415)
T ss_pred ChhhHHHHHHHHHHHHhhC
No 35
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=33.83 E-value=1.5e+02 Score=41.79 Aligned_cols=232 Identities=16% Similarity=0.110 Sum_probs=140.2
Q ss_pred hhhhhHHHHHHHHhcccCccchhhhhHHHHHHHHhhhccccCCCCCCCCccccC-------CCCCCcCCchhhhhhhhhh
Q 000208 354 DIRAVREFWEEIKRGLVDEEGLVRKQSLHILKAVLQIRGENQGHSGVSDMRSQG-------KNSTARGMTKRDLWAVKEA 426 (1857)
Q Consensus 354 d~r~~~~fW~~i~~glvd~d~LvRKqs~~iLk~~l~i~~~~~~~s~~~~~~~~~-------~~~~~~~~tk~~~Wa~kea 426 (1857)
+++..++||-....|++-++++.|+...|++..++..+...+.+..+.+...-+ -+|--++|+-+-.=-.+
T Consensus 238 ~~vrkq~f~i~~~~l~i~aa~lt~~~~kye~~~av~rs~~l~ad~~~~e~r~lavs~l~~s~~kgs~~W~~f~tl~E~-- 315 (1477)
T KOG0839|consen 238 QQVRKQKFSISFLLLFILAAELTPELIKYEKTDAVWRSIQLEADNDVHEHRKLAVSILKLSIQKGSSHWITFQTLFEK-- 315 (1477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhHhhhhhHHHhhhcccccCCcchhcccHHHHHHHHhccchHHHHHHHHHHH--
Confidence 789999999999999999999999999999998888888877775543333100 00111122221111111
Q ss_pred hhccCccccccchhhhhhhHHHHHHHHHHHHHHhhhhhhhHhhhhhhhhhhhccccCCCCCCCCCCccccccccCCcccc
Q 000208 427 KSLGVGKLCYSTDLALKQGQQQWEAFILLYEMLEEYSTHLVEAAWNHQITLLLQFSLPHDNLPGSTGRAHQNWIKPSGEI 506 (1857)
Q Consensus 427 kslgvg~~~~s~~~~~~~~q~~w~~f~llyE~l~e~~tHlve~~W~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1857)
..|.-.-.- .--|..|=.||||+.+-|+-- -|..-. ..-.-.+|| .-..
T Consensus 316 ----LEe~q~H~i------~pvwpkfdtL~esvr~Dg~ln---qWl~v~---~~R~f~hdN---------------~~lr 364 (1477)
T KOG0839|consen 316 ----LEELQNHEI------LPVWPKFDTLYESVRLDGSLN---QWLAVK---QDRIFIHDN---------------EHLR 364 (1477)
T ss_pred ----HhcccceEe------echhhHHHHHHHHHHHcCchh---HHHHHH---HHHHHhccC---------------Ceee
Confidence 000001111 124999999999999655531 332211 111111221 1112
Q ss_pred hhHHHHHHhhccCCCChhHHHHHHHhhhhhccc--ccccccccCCccccchhhhhccCCCccccccCCCCcccchhHHHH
Q 000208 507 FDWLSVLWERGFCHGNPQVRYMIMQSFLGIEWK--SYENCAKSVPESFLLGPFMEGLNDPVHHKDFGTKGVYSSRTIERA 584 (1857)
Q Consensus 507 f~W~~iL~~rgf~h~Np~vr~~vm~sfl~i~~~--~y~~~~~~~p~~Fvlgpli~~lnd~~~~k~f~~kgvy~s~~i~~a 584 (1857)
-.|+.+...-|.+.-=|.+++-||--++++.-+ +|... --++--+||+..++ |+ |+++++- ++.-+.-
T Consensus 365 ~~~~e~flsi~~~~~k~~~~~fi~g~~i~~Ln~s~~~sd~---pl~~i~~sp~~~~a----~q--f~v~y~S-cl~~e~~ 434 (1477)
T KOG0839|consen 365 HSWGEIFLSIGLKSSKESVRKFIMGLMISILNMSAFSSDL---PLLTITLSPAAMSA----HQ--FDVKYVS-CLHGEKL 434 (1477)
T ss_pred ehhhhhhhhhchhhhcccchhHhhhhhhhcccchhhcccC---CccccccchhHHHH----HH--HHhhhcc-cCCchhh
Confidence 278999999999999999999999999999854 55544 11233348988876 34 8887652 2344444
Q ss_pred HHHHHHHHhccc--h-hhhHHHH-HHHHHHHhhhhhhhHHHHHHHHHH
Q 000208 585 ASFLHQYASFLD--T-RKQIAFL-SNLASVAKQQSFGRVGLMALAECI 628 (1857)
Q Consensus 585 ~~f~~~Y~~~l~--~-~~~~~fl-~~l~s~ak~~sf~r~~lm~l~~~i 628 (1857)
--|+-+..+..+ . --.|-|+ ..++.+.|+-|++..++-.+-.-+
T Consensus 435 s~Fl~nlls~~tl~~Civ~ilfvv~al~~v~~e~sL~~Ddi~~~~dvL 482 (1477)
T KOG0839|consen 435 SLFLNNLLSQTTLHECIVDILFVVLALLNVEKETSLDPDDIYLSYDVL 482 (1477)
T ss_pred HHHHHHHHHHhHhHhhhHHHHHHHHHhhccccccccCccccHHHHHHH
Confidence 457777766655 2 1223343 445567778889999887544433
No 36
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=31.59 E-value=2.5e+02 Score=32.86 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=67.2
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC--CC--CC---ch---hHHh----hcC-CCceeeeEEEeccCCHH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA--NI--LH---DK---QFQL----ISV-TAEKWVPIVEVPVNSIK 1770 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~--~~--~~---~K---~vRr----aSm-GA~~wLPI~eV~~~dL~ 1770 (1857)
.+.++.. +-++.-+=-+++-|--+||+.++.... +. +. ++ ..++ |+. .-.-|+|-... +.++.
T Consensus 77 ~i~l~~a-l~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~~lP~i~~-~~~l~ 154 (240)
T TIGR00046 77 KIHLAIV-LIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRNIVPEIKP-PKNLK 154 (240)
T ss_pred EEEEEEe-ecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCCCCCEECC-cCCHH
Confidence 3555544 447889999999999999999998643 21 11 11 1222 222 22347787774 56888
Q ss_pred HHHHHHhhCCCEEEEEEecCCCCCC-cccc-CCCCEEEEECCCCCCCCHHHHHhC
Q 000208 1771 HFLERKKHEGFSVLGLEQTANSIPL-DQYM-FPKKTVLVLGREKEGIPVDIIHML 1823 (1857)
Q Consensus 1771 e~Le~LK~~Gy~IVAte~t~gSv~L-~d~~-fpkKvALVLGNEg~GLS~elL~lc 1823 (1857)
++++.....+..++. .. +..+. ..+. .++++++++|.|| |.+++.++.+
T Consensus 155 ~~l~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~v~~~IGPEG-Gfs~~Ei~~~ 205 (240)
T TIGR00046 155 EKCAEAYEEALKLNF-HP--EASPLSANLPIPAGNIVIIIGPEG-GFSEKEIQLL 205 (240)
T ss_pred HHHhhCcCCCeEEEE-CC--cccchhhhhccCCCcEEEEECCCC-CCCHHHHHHH
Confidence 887654322223333 22 11222 1111 2356999999999 9999988765
No 37
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins.
Probab=30.88 E-value=77 Score=35.84 Aligned_cols=46 Identities=24% Similarity=0.350 Sum_probs=39.8
Q ss_pred CCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHH
Q 000208 1801 PKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIAL 1848 (1857)
Q Consensus 1801 pkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlL 1848 (1857)
.++..+++|=-++|||+++++.+...+-|- |.-=||--.+|.|++-
T Consensus 119 ~~s~~~liGLGR~GLPkei~k~a~yHLDIT--gkgiSLETCTAiG~Ip 164 (173)
T PF04407_consen 119 GKSFLLLIGLGRHGLPKEIFKMAKYHLDIT--GKGISLETCTAIGAIP 164 (173)
T ss_pred CCceEEEEecCCCCCcHHHHHhchhceeec--CCceeeehhhHHhhHH
Confidence 467899999999999999999999999987 5556999888888763
No 38
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.33 E-value=7e+02 Score=34.28 Aligned_cols=300 Identities=17% Similarity=0.191 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHhHHHHHHhhhhcCCCCCccccccCCChH-HHHHHHHHHHHHhhccCCCcchhHHHHH
Q 000208 1120 RYIFNDLVESLENAGEGSLLPMLRSVRLTLDLFASGSSGSLVSSCRGVDTQ-MMWHLVRSSWILHISCNKRRVAPIAALL 1198 (1857)
Q Consensus 1120 r~~~~~~lEsL~~Ag~gs~lpil~sl~ilL~~l~~~~~~s~~ss~~g~~~~-~m~~L~~ssW~a~~dsn~r~~a~iaAfv 1198 (1857)
..+-+..+|+|..-.+..-++|++++.-..| + +. -+++ +++++ ..|..|+.+. .+-+-+
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p---~--d~--------~ea~~i~~r~--~p~Lqh~n~a-----vvlsav 260 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVP---K--DS--------REAEDICERL--TPRLQHANSA-----VVLSAV 260 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC---C--Cc--------hhHHHHHHHh--hhhhccCCcc-----eEeehH
Confidence 3455889999999999999999999887633 1 11 1343 34443 2455555544 222225
Q ss_pred HHHhhcccccccccccccCCCChhHHHHHH----HHHhCCCCccHHHHHHHHHhhhhhcCcchhH-------------HH
Q 000208 1199 SSVLHYSVFSEEEMHMMENTPGPLKWFVEK----VLEEGTKSPRTIRLAALHLTGLWLTNPWIIK-------------YY 1261 (1857)
Q Consensus 1199 s~vlhpslF~~~elh~~~~~~g~lKwfv~k----~L~~gs~spRi~~lla~hl~~~Wl~~P~~a~-------------~Y 1261 (1857)
..++|..-. | .-....+++| ++.--+..+-+-+++..+.+-+....|.+.+ .|
T Consensus 261 Kv~l~~~~~-----~-----~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiY 330 (734)
T KOG1061|consen 261 KVILQLVKY-----L-----KQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIY 330 (734)
T ss_pred HHHHHHHHH-----H-----HHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchh
Confidence 555554311 1 0122233333 2222233347888899999999999998643 36
Q ss_pred HHHHHHHhhccccccChhHHHHhhhhcccccchhhccCCCccccccccccccceehhhHHHHHHHhhhhhhhcCChhHhH
Q 000208 1262 IKELKLLTLYGSVAFDEDFEAELAENYDAKTEVSLLAKSPVPELTEAFINTELYARVSVAVLFSKLADQTEIVGSAKECQ 1341 (1857)
Q Consensus 1262 ~~EL~~LlLyg~v~~ded~e~elaE~~~a~tev~~la~sp~~~lte~~~ntd~y~Rv~va~~l~~L~d~s~~v~s~~e~~ 1341 (1857)
+|+.+.=++++.+- +++ +++ ..+|..--+.+-+ -.++|=+ +.++++.+-.+.+.+.|.
T Consensus 331 vK~eKleil~~la~-~~n----l~q---vl~El~eYatevD----------~~fvrka----Iraig~~aik~e~~~~cv 388 (734)
T KOG1061|consen 331 VKLEKLEILIELAN-DAN----LAQ---VLAELKEYATEVD----------VDFVRKA----VRAIGRLAIKAEQSNDCV 388 (734)
T ss_pred hHHHHHHHHHHHhh-HhH----HHH---HHHHHHHhhhhhC----------HHHHHHH----HHHhhhhhhhhhhhhhhH
Confidence 67766667666431 222 111 2222211111111 1122222 222333332222234442
Q ss_pred HHhhhhHHHHHHHHHHhcCCchhhhhhhccCcHHHHHHHHHHHHHHhhhcccChhHHHhHHHHHHHhhhcCCChhHHHHH
Q 000208 1342 DALDSGKLFLLGLLDFVVNDKDLARELYKKYSAIHRRKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYL 1421 (1857)
Q Consensus 1342 ~a~~s~klf~~~LL~~~~~d~dlsK~~y~~nS~~HR~KlRlWQtLCvLsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYI 1421 (1857)
. .+++|++- |..| ..+.+. +.++-+.++.++.. +.+...+-..+..-.-|-.|.++
T Consensus 389 ~-------~lLell~~--------~~~y---vvqE~~-----vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~am 444 (734)
T KOG1061|consen 389 S-------ILLELLET--------KVDY---VVQEAI-----VVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAAL 444 (734)
T ss_pred H-------HHHHHHhh--------cccc---eeeehh-----HHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHH
Confidence 2 23444442 1222 333333 23455566665543 33444444445555668899999
Q ss_pred HHHHHHHHhhCCchhhhhhhhhhccCCCC-ccchHHHHHHHHHHHHhhchhhHHHHHhhhhhhhccccc--cCCchhHHH
Q 000208 1422 ETFAITIYLKFPSLVAEQLVPILRDYDMR-PQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLT--SHHHSLRGF 1498 (1857)
Q Consensus 1422 EwFiI~il~k~P~lle~~Llp~L~D~nlr-pqvlsS~v~Iaa~VLl~~~~~~q~~~L~~lL~~IlPw~t--Sh~~sVR~f 1498 (1857)
-|+.=.+.++.|+..+ .|=.++.+..-+ +++.-+++.-+-.+.++..... .+++..++|||+ +|++=+|-=
T Consensus 445 iWilg~y~~~i~~a~e-lL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t-----q~~l~~vL~~~~~d~~~~dlrDr 518 (734)
T KOG1061|consen 445 IWILGEYAERIENALE-LLESFLENFKDETAEVQLELLTAAIKLFLKKPTET-----QELLQGVLPLATADTDNPDLRDR 518 (734)
T ss_pred HHHHhhhhhccCcHHH-HHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH-----HHHHHHHHhhhhccccChhhhhh
Confidence 9999999999887554 333333333333 4444444443445556555333 457778999999 667778765
Q ss_pred HHH
Q 000208 1499 TQL 1501 (1857)
Q Consensus 1499 Aql 1501 (1857)
+..
T Consensus 519 ~l~ 521 (734)
T KOG1061|consen 519 GLI 521 (734)
T ss_pred HHH
Confidence 543
No 39
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=30.22 E-value=64 Score=36.18 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=93.4
Q ss_pred HhccchhhhHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHhcccccccccccccccCCCCCCCCcccCCCCCCccCCch
Q 000208 592 ASFLDTRKQIAFLSNLASVAK--QQSFGRVGLMALAECIASAACGVAAHIENKAECCGDAFPEKVPEECSPENFPCNDKS 669 (1857)
Q Consensus 592 ~~~l~~~~~~~fl~~l~s~ak--~~sf~r~~lm~l~~~ias~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1857)
+.+|++..+..++-+++.-++ +|-.|=.+=.|-|-++|=+|..++.. -|+| .++..+..
T Consensus 33 ~~fL~~~~~~~~~~~~~~Yl~~E~D~RGfv~~~GWaHa~AH~aD~l~el------------------~~~p-~~~~~~~~ 93 (175)
T PF10978_consen 33 YPFLSQEERQELIDQLIRYLLLEKDTRGFVEEKGWAHAFAHGADLLDEL------------------VQHP-ELDRADKI 93 (175)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHccccccCCccCcHHHHHHHHHHHHHHH------------------HcCC-CCCHHHHH
Confidence 677888889999999988766 56677778888888888888866555 3455 44555566
Q ss_pred hhHHHHHHHHHhhhcccCccccccccccccccccchhhHHHHHhhhhcccccccchhHHHHHHhcccchhhccccchHHH
Q 000208 670 DLLDFLRFVIESSKQHFNPNYRLRGYSFWQFKLWFPVCEKVLEAAASLMCTFEVPLEILLHFISALPREFTDYGGSLRAR 749 (1857)
Q Consensus 670 ~~~d~~~~~~e~s~~~~n~~~r~~~~~~~~~~~~~~~~e~~l~~~~s~~~~~~i~~~~~~~~i~~iP~eft~y~g~lr~~ 749 (1857)
++|+++...+-. .+++ .++-=+|....+-...++.-+++-+.++.+|..+|..|..+..+.-.
T Consensus 94 ~lL~~i~~~~~~------~~~~----------~~~~EdeRLa~~~~~~l~~~~l~~~~~~~wl~~~~~~l~~~~~~~~~- 156 (175)
T PF10978_consen 94 ELLAAILEKYKR------LSTP----------FIDGEDERLATALIELLNRNKLYQEELLSWLKSWRQDLPTQRPPYSE- 156 (175)
T ss_pred HHHHHHHHHHcC------CCcc----------eeCCChhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcccccch-
Confidence 666666332221 1222 23344444455556778888899999999999998888765321111
Q ss_pred HHHHhcccccccccccchhHHHHHhhcc
Q 000208 750 VREWLSGCSKQQSANNCKSRMLVLKSLN 777 (1857)
Q Consensus 750 ~~~Wl~g~~~~~~n~~~~~~~~ll~~~~ 777 (1857)
..|.. +.|.+++|++|+
T Consensus 157 -~~~~~----------~~N~~~fL~sLy 173 (175)
T PF10978_consen 157 -ADWYR----------FSNIKRFLRSLY 173 (175)
T ss_pred -HHHHH----------HHHHHHHHHHHh
Confidence 45555 777788887764
No 40
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=26.47 E-value=2.2e+02 Score=33.33 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=58.2
Q ss_pred EEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCC-CEEEEECCCCCCCCHHHHHh----CCcEEEEcCCCCCC
Q 000208 1762 VEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPK-KTVLVLGREKEGIPVDIIHM----LDACIEIPQLGVVR 1836 (1857)
Q Consensus 1762 ~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpk-KvALVLGNEg~GLS~elL~l----cD~~V~IPM~G~Vr 1836 (1857)
+.+.-.++++.+++++.. +++|-+. +++.++.++.++. ..++|+|- ..|+|++..+. .+..|.+-- .
T Consensus 108 i~v~~~~fe~ll~~~~~~-~~l~~L~--e~G~di~~~~~~~~d~~FVLgD-H~g~~~eee~~L~~~~a~kiSlGP----~ 179 (199)
T PF04013_consen 108 IYVRKGGFEDLLEELAEE-YPLYYLH--EDGEDIRDVEFPGNDPVFVLGD-HIGFTEEEEELLERLGAEKISLGP----K 179 (199)
T ss_dssp EEEE---HHHHHHHHHCT-SEEEEES--TTSEEGGGS---S-SEEEEEE--TT-SHHHHHHHHHCTTSEEEES-S----S
T ss_pred EEEecCCHHHHHHHHhcC-CcEEEEc--CCCCcHhhcccCCCCCeEEEeC-CCCCCHHHHHHHHHccCceEEeCC----H
Confidence 333335899999999877 8999876 5679999999998 99999995 56999887654 366777633 5
Q ss_pred cccHHHHHHHHHHHHHHh
Q 000208 1837 SLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1837 SLNVAVAAAIlLYEltRQ 1854 (1857)
||=..++..++-+|+-|.
T Consensus 180 ~lhAdhcI~ivhn~LD~~ 197 (199)
T PF04013_consen 180 SLHADHCITIVHNELDRR 197 (199)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999998664
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=25.81 E-value=8.9e+02 Score=33.47 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=55.5
Q ss_pred HhhhcccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCchhh-----hhhhhhhccCCCCccchHHHHHHH
Q 000208 1387 CILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVA-----EQLVPILRDYDMRPQALSSYVFIA 1461 (1857)
Q Consensus 1387 CvLsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~lle-----~~Llp~L~D~nlrpqvlsS~v~Ia 1461 (1857)
-.|+..-.+++++.+...|.+++.. ..|-||.=.=+.+.++++.+|++++ +.+..++.|.+ |.|+++.+...
T Consensus 127 RtLs~Ir~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~d--p~Vv~nAl~aL 203 (746)
T PTZ00429 127 RTMMCIRVSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNN--PVVASNAAAIV 203 (746)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCC--ccHHHHHHHHH
Confidence 3444455677888888889999965 5699999999999999999998753 45666666655 77777766554
Q ss_pred HHH
Q 000208 1462 ANV 1464 (1857)
Q Consensus 1462 a~V 1464 (1857)
..+
T Consensus 204 ~eI 206 (746)
T PTZ00429 204 CEV 206 (746)
T ss_pred HHH
Confidence 444
No 42
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.02 E-value=3.5e+02 Score=40.42 Aligned_cols=121 Identities=18% Similarity=0.286 Sum_probs=78.8
Q ss_pred hhHHHHHHhh---ccCCCChhHHHHHHHhhhhhcccccccccccCCccc-------cchhhhhccC---CCccccccCCC
Q 000208 507 FDWLSVLWER---GFCHGNPQVRYMIMQSFLGIEWKSYENCAKSVPESF-------LLGPFMEGLN---DPVHHKDFGTK 573 (1857)
Q Consensus 507 f~W~~iL~~r---gf~h~Np~vr~~vm~sfl~i~~~~y~~~~~~~p~~F-------vlgpli~~ln---d~~~~k~f~~k 573 (1857)
-.|+-+|... .. ++-|.||..-++.+++|. +.|+.. .|.+| |+=|+++-+. ++.++..-..+
T Consensus 1343 ~lW~pLL~~Ls~l~~-D~RlEVR~~ALqtLF~iL-~~yG~~---Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~ 1417 (1780)
T PLN03076 1343 YFWFPLLAGLSELSF-DPRPEIRKSALQVLFDTL-RNHGHL---FSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQ 1417 (1780)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHH-HHhhcc---CCHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 4798888765 55 689999999999999999 668887 89877 8889976653 34343211122
Q ss_pred Ccc-----------cchhHHHH----HHHHHHHHhccchhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHhcc
Q 000208 574 GVY-----------SSRTIERA----ASFLHQYASFLDTRKQIAFLSNLASVAKQQ--SFGRVGLMALAECIASAAC 633 (1857)
Q Consensus 574 gvy-----------~s~~i~~a----~~f~~~Y~~~l~~~~~~~fl~~l~s~ak~~--sf~r~~lm~l~~~ias~~~ 633 (1857)
+++ .+.|.-.| -..|+.|+..|.. .=-.||.-|.++.+|+ .--|.|.-+|-..|...+.
T Consensus 1418 ~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1418 GVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 222 23444444 5567777766655 3334555566666543 4557777777777766555
Done!