Query 000208
Match_columns 1857
No_of_seqs 313 out of 1829
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 01:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gz0_A Hypothetical tRNA/RRNA 100.0 2.6E-35 8.8E-40 328.1 16.3 190 1663-1856 58-253 (253)
2 3nk6_A 23S rRNA methyltransfer 100.0 1.4E-35 4.9E-40 334.2 14.1 188 1662-1855 76-267 (277)
3 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 4.1E-35 1.4E-39 330.0 15.3 189 1663-1857 74-263 (274)
4 1x7o_A Avirb, rRNA methyltrans 100.0 7.1E-35 2.4E-39 329.9 13.7 189 1663-1856 83-279 (287)
5 2ha8_A TAR (HIV-1) RNA loop bi 100.0 3.6E-34 1.2E-38 305.4 12.4 155 1703-1857 23-177 (184)
6 2i6d_A RNA methyltransferase, 100.0 2E-34 6.7E-39 321.6 10.6 184 1663-1855 64-257 (257)
7 3e5y_A TRMH family RNA methylt 100.0 1.8E-33 6.3E-38 294.0 10.6 149 1706-1857 5-156 (160)
8 3n4j_A RNA methyltransferase; 100.0 4.1E-33 1.4E-37 292.9 13.1 149 1706-1857 4-158 (165)
9 1v2x_A TRNA (GM18) methyltrans 100.0 6.8E-33 2.3E-37 297.7 13.2 162 1692-1856 7-169 (194)
10 1zjr_A TRNA (guanosine-2'-O-)- 100.0 2.1E-32 7.2E-37 297.6 14.5 161 1693-1855 11-172 (211)
11 3l8u_A SMU.1707C, putative rRN 100.0 3E-31 1E-35 283.4 14.2 149 1703-1857 14-167 (182)
12 3kty_A Probable methyltransfer 100.0 5.7E-30 1.9E-34 270.1 9.9 145 1705-1855 9-172 (173)
13 3ilk_A Uncharacterized tRNA/RR 99.9 6.8E-27 2.3E-31 260.0 9.7 145 1705-1855 6-160 (244)
14 3onp_A TRNA/RRNA methyltransfe 99.9 2.9E-26 9.8E-31 255.5 11.4 143 1706-1855 4-162 (249)
15 3ic6_A Putative methylase fami 99.9 1.8E-26 6.3E-31 253.7 9.1 146 1705-1855 16-194 (223)
16 3dcm_X AdoMet, uncharacterized 99.4 5.9E-13 2E-17 144.1 10.6 132 1720-1853 31-185 (192)
17 2o3a_A UPF0106 protein AF_0751 91.7 0.3 1E-05 52.6 7.2 114 1723-1852 24-143 (178)
18 2yy8_A ATRM56, UPF0106 protein 90.5 0.35 1.2E-05 52.9 6.4 116 1723-1853 21-147 (201)
19 2qmm_A UPF0217 protein AF_1056 78.6 5.1 0.00017 44.3 8.4 88 1760-1855 105-196 (197)
20 3kw2_A Probable R-RNA methyltr 69.3 8.4 0.00029 43.7 7.5 118 1705-1824 77-212 (257)
21 1vhk_A Hypothetical protein YQ 59.0 23 0.00077 40.4 8.5 142 1706-1850 82-250 (268)
22 3aia_A UPF0217 protein MJ1640; 58.1 34 0.0012 38.2 9.5 87 1760-1854 116-206 (211)
23 2qwv_A UPF0217 protein VC_A105 56.3 27 0.00091 39.1 8.2 85 1762-1854 116-204 (208)
24 4a5u_A RNA replicase polyprote 38.9 12 0.00042 40.2 2.1 59 21-84 50-116 (160)
25 2vgl_B AP-2 complex subunit be 35.7 1.3E+02 0.0045 36.9 10.7 63 1385-1448 106-173 (591)
26 2qk2_A LP04448P; mini spindles 34.4 3.1E+02 0.011 29.2 12.2 128 1378-1508 73-205 (242)
27 4fdd_A Transportin-1; heat rep 30.3 7E+02 0.024 31.6 16.2 129 1378-1509 337-472 (852)
28 2jak_A Serine/threonine-protei 28.4 4.7E+02 0.016 31.7 13.4 109 1389-1505 167-282 (392)
29 1vhy_A Hypothetical protein HI 28.1 52 0.0018 37.3 5.0 112 1706-1823 81-210 (257)
30 2bpt_A Importin beta-1 subunit 23.7 5.8E+02 0.02 31.7 13.6 137 1398-1539 322-466 (861)
31 4e8b_A Ribosomal RNA small sub 23.6 1.2E+02 0.0041 34.2 6.9 112 1706-1823 79-207 (251)
32 2npp_B PP2A, B subunit, serine 23.3 5E+02 0.017 32.0 12.5 109 1389-1505 155-270 (449)
33 2vgl_A Adaptor protein complex 20.3 1.6E+02 0.0054 36.9 7.7 74 1384-1459 130-209 (621)
34 1v6z_A Hypothetical protein TT 20.2 53 0.0018 36.6 3.0 110 1706-1824 72-195 (228)
35 1z85_A Hypothetical protein TM 20.1 36 0.0012 38.2 1.7 126 1706-1844 86-220 (234)
No 1
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=2.6e-35 Score=328.05 Aligned_cols=190 Identities=22% Similarity=0.288 Sum_probs=167.2
Q ss_pred CCccccCHHHHHHHhcccCccchhhhhchhhh---hhHHHHhh-ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEec
Q 000208 1663 SSSFFGNREAYKQLLEIEKEDELFDQVLQARS---LAMETIRA-SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIA 1738 (1857)
Q Consensus 1663 ~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~---~sLe~l~~-~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~ 1738 (1857)
.+.+..+++.+++++++.+|||++|.+.+++. ..+..+.. ...+++||||+++||+|+|+|+|||++||+++|+++
T Consensus 58 i~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~ 137 (253)
T 1gz0_A 58 VVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVP 137 (253)
T ss_dssp CEEEEECSHHHHHTTTSCCCTTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcEEEeCHHHHHHHhCCCCCcEEEEEEeccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEe
Confidence 45666788999999999999999998865443 34444432 235799999999999999999999999999999998
Q ss_pred CCC--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCC
Q 000208 1739 DAN--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIP 1816 (1857)
Q Consensus 1739 ~~~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS 1816 (1857)
+++ +++++ +.|+|+||.+|+|+.++ .++.++++.+++.|++++|++. .++.+++++++++|++||||||++|||
T Consensus 138 ~~~~~~~~~~-~~ras~Ga~~~l~~~~~--~~~~~~l~~l~~~g~~i~~~~~-~~~~~~~~~~~~~~~alv~G~E~~Gls 213 (253)
T 1gz0_A 138 KDRSAQLNAT-AKKVACGAAESVPLIRV--TNLARTMRMLQEENIWIVGTAG-EADHTLYQSKMTGRLALVMGAEGEGMR 213 (253)
T ss_dssp SSSSCCCCHH-HHHHHTTHHHHSCEEEE--SCHHHHHHHHHHTTCEEEEECT-TCSEEGGGSCCCSSEEEEEEBTTTBSC
T ss_pred CCCCCCCCHH-HHhhhcchheEEEEEEe--CCHHHHHHHHHHCCCEEEEEEC-CCCcchhhccCCCCEEEEECCCCcCcC
Confidence 876 45554 55689999999999986 7999999999999999999985 467789999999999999999999999
Q ss_pred HHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1817 VDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1817 ~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
+++++.||.+|+|||.|.++|||||+|+||+|||+.||++
T Consensus 214 ~~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~ 253 (253)
T 1gz0_A 214 RLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 253 (253)
T ss_dssp HHHHHTCSEEEECCCSSSSCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCEEEEECCCCCCCceeHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999974
No 2
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.4e-35 Score=334.24 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=163.5
Q ss_pred CCCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecC-C
Q 000208 1662 SSSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD-A 1740 (1857)
Q Consensus 1662 d~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~-~ 1740 (1857)
+.+.+..+++.+++++++.+|||++|.+.++...+++++.....+ +||||+|+||+|+|+|+|||++||+++|++.+ +
T Consensus 76 ~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~~~~~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil~~~~ 154 (277)
T 3nk6_A 76 EIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSD 154 (277)
T ss_dssp TCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHHHHHHHCSC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCC
T ss_pred CCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHHHHhccCCC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEEcCCC
Confidence 356777899999999999999999998876645566666543446 99999999999999999999999999999998 6
Q ss_pred C--CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCcc-ccCCCCEEEEECCCCCCCCH
Q 000208 1741 N--ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQ-YMFPKKTVLVLGREKEGIPV 1817 (1857)
Q Consensus 1741 ~--~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d-~~fpkKvALVLGNEg~GLS~ 1817 (1857)
+ +++++ +.|+|+||.+|+|+.++ ++.++++.+++.||+++|++.+ ++.++++ .++++|++||||||++|||+
T Consensus 155 ~~~~~~~~-v~ras~Ga~~~l~i~~~---~l~~~l~~lk~~g~~v~~~~~~-~~~~~~~~~~~~~~~alv~GnE~~Gls~ 229 (277)
T 3nk6_A 155 LATIADRR-LLRASRGYVFSLPVVLA---DREEAVSFLRDNDIALMVLDTD-GDLGVKDLGDRADRMALVFGSEKGGPSG 229 (277)
T ss_dssp CSCTTCHH-HHHHTTTCTTTSCEEEC---CHHHHHHHHHHTTCCEEEECTT-CSEEGGGGGGCCSCCEEEEEBTTTBSCH
T ss_pred CcCCCCHH-HHHHhCChhhcCeEEEE---CHHHHHHHHHhcCCeEEEEecC-CCcchhhhhccCCCEEEEECCCCCCCCH
Confidence 5 34544 55589999999999984 9999999999999999999975 5778999 99999999999999999999
Q ss_pred HHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhc
Q 000208 1818 DIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1818 elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQr 1855 (1857)
++++.||.+|+|||.|.++|||||||+||+|||+.||+
T Consensus 230 ~~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~ 267 (277)
T 3nk6_A 230 LFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARN 267 (277)
T ss_dssp HHHHHCSCEEECCCSSTTCCCCHHHHHHHHHHHTHHHH
T ss_pred HHHHhCCeEEEECCCCCCCCchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999997
No 3
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=4.1e-35 Score=330.00 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=165.3
Q ss_pred CCccccCHHHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-
Q 000208 1663 SSSFFGNREAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN- 1741 (1857)
Q Consensus 1663 ~p~~v~see~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~- 1741 (1857)
.+.+..+++.+++++++.+|||++|.+.++. .+++++.....+++||||+|+||+|+|+|+|||++||+++|++.++.
T Consensus 74 ~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~-~~l~~~~~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~~ 152 (274)
T 1ipa_A 74 LALLEVSEAVLKKLSVRDNPAGLIALARMPE-RTLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVD 152 (274)
T ss_dssp CEEEEECHHHHHHHCCSSSCCSEEEEEECCC-CCCCCCCCCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESCCC
T ss_pred ccEEEeCHHHHHHHhCCCCCCeEEEEEeCCC-CCHHHHhccCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCCcC
Confidence 4567789999999999999999999886543 23333211234589999999999999999999999999999998874
Q ss_pred CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHH
Q 000208 1742 ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIH 1821 (1857)
Q Consensus 1742 ~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~ 1821 (1857)
+++++ +.|+|+||.+|+|+.+ .++.++++.+++.||+++|++.+ ++.+++++++++|++||||||++|||+++++
T Consensus 153 ~~~~~-v~ras~Ga~~~l~~~~---~~l~~~l~~l~~~g~~i~~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~ 227 (274)
T 1ipa_A 153 LYSPQ-VIRNSTGVVFSLRTLA---ASESEVLDWIKQHNLPLVATTPH-AEALYWEANLRPPVAIAVGPEHEGLRAAWLE 227 (274)
T ss_dssp TTCHH-HHHHTTTGGGTSCEEE---ECHHHHHHHHHHTTCCEEEECTT-CSSBGGGSCCCSSEEEEECCTTSCCCHHHHH
T ss_pred cCCHH-HHHHcCChhhcceeEe---CCHHHHHHHHHHcCCEEEEEeCC-CCcchhhcCCCCCEEEEECCCCcCCCHHHHH
Confidence 34444 5568999999999987 59999999999999999999976 5678999999999999999999999999999
Q ss_pred hCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1822 MLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1822 lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
.||.+|+|||.|.++|||||||+||+|||+.||+++
T Consensus 228 ~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~~ 263 (274)
T 1ipa_A 228 AAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLL 263 (274)
T ss_dssp HCSEEEBCCCCSSCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred hCCeEEEECCCCCCCceeHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999864
No 4
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=7.1e-35 Score=329.92 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=167.1
Q ss_pred CCccccCHHHHHHHhccc-CccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC
Q 000208 1663 SSSFFGNREAYKQLLEIE-KEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN 1741 (1857)
Q Consensus 1663 ~p~~v~see~l~~Ls~~e-~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~ 1741 (1857)
.+.+..+++.+++++++. +|||++|.+.++. .+++++.....+++||||+|+||+|+|+|+|||++||+++|++++++
T Consensus 83 ~~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~-~~l~~~~~~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~ 161 (287)
T 1x7o_A 83 TEQIAMAPDLLMELGEKNEAPPEVVAVVEMPA-DDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHA 161 (287)
T ss_dssp SEEEEECHHHHTTSSCSSSCCCSEEEEEECCC-CCGGGSCCCTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CcEEEeCHHHHHHHhCCCCCCCcEEEEEecCC-CCHHHHhcccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCC
Confidence 356677999999999999 9999999886544 34444332225789999999999999999999999999999999876
Q ss_pred --CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHH---hhCCCE--EEEEEecCCCCCCccccCCCCEEEEECCCCCC
Q 000208 1742 --ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERK---KHEGFS--VLGLEQTANSIPLDQYMFPKKTVLVLGREKEG 1814 (1857)
Q Consensus 1742 --~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~L---K~~Gy~--IVAte~t~gSv~L~d~~fpkKvALVLGNEg~G 1814 (1857)
+++++ +.++|+||.+|+|+.++ .++.++++.+ ++.||+ ++|++.+ ++.++++++++++++||||||++|
T Consensus 162 ~d~~~~k-v~ras~Ga~~~l~i~~~--~~l~~~l~~l~~~~~~g~~~~i~~~~~~-~~~~~~~~~~~~~~alV~GnE~~G 237 (287)
T 1x7o_A 162 ADVYDPK-SVRSSTGSLFSLPAVRV--PSPGEVMDWVEARRAAGTPIVLVGTDEH-GDCDVFDFDFTQPTLLLIGNETAG 237 (287)
T ss_dssp SCTTSHH-HHHHTTTGGGTSCEEEE--SSHHHHHHHHHHHHHHTCCCEEEEECTT-CSEEGGGSCTTSCEEEEECBTTTB
T ss_pred cCccCHH-HHhhhcCcceeeeEEEe--CCHHHHHHHHHHHHhcCCceEEEEEECC-CCccHhhcCCCCCEEEEECCCCCC
Confidence 44555 45589999999999985 7999999999 999999 9999975 677899999999999999999999
Q ss_pred CCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhcc
Q 000208 1815 IPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1856 (1857)
Q Consensus 1815 LS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr 1856 (1857)
||+++++.||.+|+|||.|.++|||||||+||+|||+.||++
T Consensus 238 ls~~~~~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~ 279 (287)
T 1x7o_A 238 LSNAWRTLCDYTVSIPMAGSASSLNAANAATAILYEAVRQRI 279 (287)
T ss_dssp SCHHHHHHCSEEEECCCSSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHhCCeEEEECCCCCCCceEHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999974
No 5
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=305.35 Aligned_cols=155 Identities=55% Similarity=0.969 Sum_probs=143.9
Q ss_pred ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCE
Q 000208 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFS 1782 (1857)
Q Consensus 1703 ~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~ 1782 (1857)
+..+++|||++|+||+|+|+|+|||++||+++|++.+...++++.++++|+||.+|+|+.++.++++.++++.+|+.||+
T Consensus 23 ~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~g~~ 102 (184)
T 2ha8_A 23 SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYT 102 (184)
T ss_dssp CCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTCE
T ss_pred CCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECCCCCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHCCCE
Confidence 34578999999999999999999999999999999876677788888899999999999986457999999999999999
Q ss_pred EEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1783 VLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1783 IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
++|++.+.++.++.++++++|++||||||++|||+++++.||.+|+|||.|.++|||||+|+||+|||+.||+.+
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~ 177 (184)
T 2ha8_A 103 IIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLL 177 (184)
T ss_dssp EEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCCSSSSCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCCCCCCcchHHHHHHHHHHHHHHHhhc
Confidence 999998767789999999999999999999999999999999999999999999999999999999999999753
No 6
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=2e-34 Score=321.60 Aligned_cols=184 Identities=18% Similarity=0.217 Sum_probs=158.4
Q ss_pred CCccccCH-HHHHHHhcccCccchhhhhchhhhhhHHHHhhccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC
Q 000208 1663 SSSFFGNR-EAYKQLLEIEKEDELFDQVLQARSLAMETIRASRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN 1741 (1857)
Q Consensus 1663 ~p~~v~se-e~l~~Ls~~e~~qGIlAlv~~~R~~sLe~l~~~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~ 1741 (1857)
.+.+..++ +.+++++++.+|||++|.+.++. .+++++ .+++||||+|+||+|+|+|+|||++||+++|++++++
T Consensus 64 ~~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~-~~l~~~----~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~ 138 (257)
T 2i6d_A 64 AEVVELPESFDFKRISTQTTPQPLMAVFDLPA-EPEPVV----EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGS 138 (257)
T ss_dssp CEEEEECTTCCGGGTCCSSSCCSEEEEEECCC-CCCCCC----CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred CCEEEeChHHHHHHHhcCCCCCeEEEEEECCC-CChHHh----CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCC
Confidence 45566678 88999999999999999886543 222222 2689999999999999999999999999999999876
Q ss_pred --CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccc--cCCCCEEEEECCCCCCCCH
Q 000208 1742 --ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQY--MFPKKTVLVLGREKEGIPV 1817 (1857)
Q Consensus 1742 --~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~--~fpkKvALVLGNEg~GLS~ 1817 (1857)
+++++ +.++|+||.+|+|+... .++.++++.+++.||+++|++.+ ++.+++++ ++++|++||||||++|||+
T Consensus 139 ~~~~~~~-v~ras~Ga~~~l~~~~~--~~l~~~l~~l~~~g~~i~~~~~~-~~~~~~~~~~~~~~~~alv~GnE~~Gls~ 214 (257)
T 2i6d_A 139 ADVFSPK-VVQASMGALARVQPTPL--KNTVDTLAYFRRQGIPVYGAFLD-GQSLYEAPLPNFTEPAILVLGSEGRGISP 214 (257)
T ss_dssp CCTTSHH-HHHTSTTGGGTCEEEEC--SCHHHHHHHHHHTTCCEEEEEEE-EEETTTSCCCCTTSCEEEEEEBTTTBSCH
T ss_pred CCcCCHH-HheecCCcceeeeEEEe--CCHHHHHHHHHHCCCEEEEEECC-CCccHHHhhhCcCCCEEEEECCCCCCCCH
Confidence 44555 45689999999999842 79999999999999999999976 45788888 8999999999999999999
Q ss_pred HHHHhCCcEEEEcCC-----CCCCcccHHHHHHHHHHHHHHhc
Q 000208 1818 DIIHMLDACIEIPQL-----GVVRSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1818 elL~lcD~~V~IPM~-----G~VrSLNVAVAAAIlLYEltRQr 1855 (1857)
++++.||.+|+|||. |.++|||||+|+||+|||+.||+
T Consensus 215 ~~~~~~d~~v~IPm~~~~~~g~~~SLNvsvAaaI~lye~~rq~ 257 (257)
T 2i6d_A 215 EVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 257 (257)
T ss_dssp HHHTTCSEEEECCCCSSCC----CCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCeEEEECCCcCCCCCCCCChhHHHHHHHHHHHHHhcC
Confidence 999999999999999 99999999999999999999985
No 7
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=100.00 E-value=1.8e-33 Score=294.03 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=138.1
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVL 1784 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IV 1784 (1857)
.++|||++++||+|+|+|+|||++||++.+++.+.+ ...++.++|+|+|+.+|+|+.++ +++.++++.+|++||+++
T Consensus 5 ~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~--~~l~~~l~~l~~~g~~i~ 82 (160)
T 3e5y_A 5 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVH--RDWDAFVAAEAPDPARMF 82 (160)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEE--SSHHHHHHHHCCCGGGEE
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcCCchhhcceEEe--CCHHHHHHHHHhCCCEEE
Confidence 489999999999999999999999999887776654 45667777899999999999986 799999999999999999
Q ss_pred EEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHh--CCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1785 GLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM--LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1785 Ate~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~l--cD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
|++.+ ++.+++++++++|++||||||++|||+++++. ||.+|+|||.|.++|||||||+||+|||+.||+++
T Consensus 83 ~~~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~~rq~~~ 156 (160)
T 3e5y_A 83 AFTTR-GSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGF 156 (160)
T ss_dssp EECST-TCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCCSSSCCCCHHHHHHHHHHHHHHHTTT
T ss_pred EEecC-CCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCCCCCCeehHHHHHHHHHHHHHHhccC
Confidence 99975 67889999999999999999999999999999 99999999999999999999999999999999875
No 8
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=100.00 E-value=4.1e-33 Score=292.94 Aligned_cols=149 Identities=19% Similarity=0.274 Sum_probs=138.0
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhh---CCC
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKH---EGF 1781 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~---~Gy 1781 (1857)
.++|||++++||+|+|+|+|||++||++.+++.+.+ .+.++.++++|+|+.+|+|+.++ +++.++++.+|+ .|+
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~--~~l~~~l~~lk~~~~~g~ 81 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH--HDYQAFLDSEKLDSTQPA 81 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEE--SSHHHHHHHTTCCSSSCT
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhccCceeecCeEEe--CCHHHHHHHHHhhccCCC
Confidence 589999999999999999999999999888877654 45667777899999999999986 799999999998 999
Q ss_pred EEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHh--CCcEEEEcCCCCCCcccHHHHHHHHHHHHHHhccC
Q 000208 1782 SVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHM--LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1782 ~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~l--cD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
+++|++. .++.+++++++++|++||||||++|||+++++. ||.+|+|||.|.++|||||+|+||+|||+.||+++
T Consensus 82 ~i~~~~~-~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~g~~~SLNvavAaaI~lye~~rq~~~ 158 (165)
T 3n4j_A 82 RLFALTT-KGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGY 158 (165)
T ss_dssp TEEEECT-TCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEc-CCCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCCCCCceeeHHHHHHHHHHHHHHhccc
Confidence 9999996 467899999999999999999999999999999 89999999999999999999999999999999864
No 9
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=99.98 E-value=6.8e-33 Score=297.69 Aligned_cols=162 Identities=25% Similarity=0.382 Sum_probs=142.5
Q ss_pred hhhhhHHHHhh-ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHH
Q 000208 1692 ARSLAMETIRA-SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIK 1770 (1857)
Q Consensus 1692 ~R~~sLe~l~~-~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~ 1770 (1857)
.|...++++.. +..+++|||++++||+|+|+|+|||++||+++|++++++.-.+ .+.++|+|+.+|+|+..+ +++.
T Consensus 7 ~~~~~~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~~-~~~r~s~Ga~~~l~~~~~--~~l~ 83 (194)
T 1v2x_A 7 ARRRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVP-TFNETSGGSHKWVYLRVH--PDLH 83 (194)
T ss_dssp CHHHHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSC-CCCSSCSSGGGTSEEEEE--SSHH
T ss_pred hhHhhHHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCch-hhHHHCCCChheeeeEec--CCHH
Confidence 34444555443 2357999999999999999999999999999999987652113 345689999999999885 7999
Q ss_pred HHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHH
Q 000208 1771 HFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWE 1850 (1857)
Q Consensus 1771 e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYE 1850 (1857)
++++.++++||+++|++.+.++.++.++++++|++||||||++|||+++++.||.+|+|||.|.++|||||+|+||+|||
T Consensus 84 ~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~g~~~SLNvs~AaaI~lye 163 (194)
T 1v2x_A 84 EAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFE 163 (194)
T ss_dssp HHHHHHHHTTCEEEEECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCCSSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCceeHHHHHHHHHHH
Confidence 99999999999999999876788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 000208 1851 YTRQQR 1856 (1857)
Q Consensus 1851 ltRQrr 1856 (1857)
+.||++
T Consensus 164 ~~rq~~ 169 (194)
T 1v2x_A 164 AQRQRL 169 (194)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999863
No 10
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=99.97 E-value=2.1e-32 Score=297.60 Aligned_cols=161 Identities=27% Similarity=0.400 Sum_probs=143.4
Q ss_pred hhhhHHHHhhc-cCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHH
Q 000208 1693 RSLAMETIRAS-RQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKH 1771 (1857)
Q Consensus 1693 R~~sLe~l~~~-r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e 1771 (1857)
|...++++... ..+++|||++++||+|+|+|+|||++||+++|++++++.-.++.++++|+||.+|+|+.++ +++.+
T Consensus 11 ~~~~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~~~~~~r~s~Ga~~~l~~~~~--~~l~~ 88 (211)
T 1zjr_A 11 RLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKINEGITQGSHKWVFIEKV--DNPVQ 88 (211)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCCCCCHHHHTTGGGSSEEEEC--SCHHH
T ss_pred hHhhHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCchHHHHHHcCCCcccceeEec--CCHHH
Confidence 44455555432 3468999999999999999999999999999999887632244666799999999999985 79999
Q ss_pred HHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHH
Q 000208 1772 FLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEY 1851 (1857)
Q Consensus 1772 ~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEl 1851 (1857)
+++.+++.||+++|++.+.++.++.++++++|++||||||++|||+++++.||.+|+|||.|.++|||||+|+||+|||+
T Consensus 89 ~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvsvAaaI~lye~ 168 (211)
T 1zjr_A 89 KLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEA 168 (211)
T ss_dssp HHHHHHHTTCEEEEEBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCCCCCCeEEHHHHHHHHHHHH
Confidence 99999999999999998767889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 000208 1852 TRQQ 1855 (1857)
Q Consensus 1852 tRQr 1855 (1857)
.||+
T Consensus 169 ~rq~ 172 (211)
T 1zjr_A 169 QRQR 172 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
No 11
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=99.97 E-value=3e-31 Score=283.38 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=128.0
Q ss_pred ccCcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCC
Q 000208 1703 SRQQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGF 1781 (1857)
Q Consensus 1703 ~r~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy 1781 (1857)
+..+++|||++++||+|+|+|+|||++||++.+++.+.+ ...++.+.|+|+|+.+++|+.++ +++.++++.+ |+
T Consensus 14 ~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~g~~~~v~i~~~--~~l~~~l~~l---g~ 88 (182)
T 3l8u_A 14 TLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFY--DSLNDFMNIC---SG 88 (182)
T ss_dssp -CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC------CCC-CCEEEE--SSHHHHHHHC---CS
T ss_pred CCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCcChhhhCCeEEc--CCHHHHHHHC---CC
Confidence 346799999999999999999999999999988887665 34445566689999999999986 7999999887 99
Q ss_pred EEEEEEecCCCCCCccccCCC--CEEEEECCCCCCCCHHHHH-hCCcEEEEcCCC-CCCcccHHHHHHHHHHHHHHhccC
Q 000208 1782 SVLGLEQTANSIPLDQYMFPK--KTVLVLGREKEGIPVDIIH-MLDACIEIPQLG-VVRSLNVHVSGAIALWEYTRQQRF 1857 (1857)
Q Consensus 1782 ~IVAte~t~gSv~L~d~~fpk--KvALVLGNEg~GLS~elL~-lcD~~V~IPM~G-~VrSLNVAVAAAIlLYEltRQrr~ 1857 (1857)
++++++. .++.++.++++++ |++||||||+.|||+++++ .||.+|+|||.| .++|||||||+||+|||+.||+++
T Consensus 89 ~i~~~~~-~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~g~~~~SLNVsvAaaI~lyE~~rq~~~ 167 (182)
T 3l8u_A 89 KLHLITK-FANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQDF 167 (182)
T ss_dssp EEEEECS-SCSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCCTTTCSCCCHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEc-CCCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCCCCCCCCEeHHHHHHHHHHHHHHhccc
Confidence 9999986 4678999999998 9999999999999999996 999999999999 999999999999999999999864
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=99.96 E-value=5.7e-30 Score=270.06 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=124.6
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCC----CCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCC
Q 000208 1705 QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANI----LHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEG 1780 (1857)
Q Consensus 1705 ~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~----~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~G 1780 (1857)
++++|||++++||+|+|+|+|||++||+++|+++++.. .+++.+ ++|+||.+++|+.++ +++++++++.++
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~-r~a~Ga~~~l~~~~~-~~~l~~~l~~~~--- 83 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAV-ALASGALDVLERAAV-HDTLEEALAPVT--- 83 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHH-HHHTTCHHHHHTCEE-ESCHHHHHTTCS---
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHH-HHcCCHHHhhchhee-cCCHHHHHHhCC---
Confidence 47999999999999999999999999999999987653 255555 579999999997665 479999988764
Q ss_pred CEEEEEEecCC------------CCCCc---cccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHH
Q 000208 1781 FSVLGLEQTAN------------SIPLD---QYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGA 1845 (1857)
Q Consensus 1781 y~IVAte~t~g------------Sv~L~---d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAA 1845 (1857)
.++|++...+ +.++. +.++++|++||||||++|||+++++.||.+|+|||.|.++|||||+|+|
T Consensus 84 -~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~g~~~SLNvs~Aaa 162 (173)
T 3kty_A 84 -LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQ 162 (173)
T ss_dssp -EEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCCSTTCCCCHHHHHH
T ss_pred -eEEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCCCCCCeEeHHHHHH
Confidence 6899886532 13455 6778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 000208 1846 IALWEYTRQQ 1855 (1857)
Q Consensus 1846 IlLYEltRQr 1855 (1857)
|+|||+.||.
T Consensus 163 I~lye~~r~~ 172 (173)
T 3kty_A 163 LAAWELRYAL 172 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.93 E-value=6.8e-27 Score=260.01 Aligned_cols=145 Identities=18% Similarity=0.229 Sum_probs=122.6
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEE
Q 000208 1705 QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVL 1784 (1857)
Q Consensus 1705 ~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IV 1784 (1857)
..+.|||++++||+|+|+|+|||++||+++++++++++++++ +.++|+||.+.+|..++ ++++.++++.+ + .++
T Consensus 6 ~~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~~~~~~-a~r~A~GA~~~l~~~~~-~~~l~eal~~~---~-~vv 79 (244)
T 3ilk_A 6 ENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQ-SYALSAGAENIVKNARV-VDSFDEAVDDC---S-LVI 79 (244)
T ss_dssp TTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSCCSHH-HHHTTTTCHHHHHHCEE-ESSHHHHTTTC---S-EEE
T ss_pred cCcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCCCCCHH-HHHHcCChhheeceeEE-eCCHHHHHHhC---C-eEE
Confidence 368999999999999999999999999999999988844444 44579999999996664 57999988765 3 788
Q ss_pred EEEecCCCCCCcc----------ccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHHh
Q 000208 1785 GLEQTANSIPLDQ----------YMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1785 Ate~t~gSv~L~d----------~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltRQ 1854 (1857)
|++.+.++..... +++++|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||++||+.||
T Consensus 80 att~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lyE~~rq 159 (244)
T 3ilk_A 80 GTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMA 159 (244)
T ss_dssp EECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred EEccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCCCCCCeeeHHHHHHHHHHHHHHH
Confidence 8876543222211 245899999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 000208 1855 Q 1855 (1857)
Q Consensus 1855 r 1855 (1857)
.
T Consensus 160 ~ 160 (244)
T 3ilk_A 160 F 160 (244)
T ss_dssp H
T ss_pred h
Confidence 5
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.93 E-value=2.9e-26 Score=255.54 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=121.3
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CCCchhHHhhcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEE
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-ILHDKQFQLISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVL 1784 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~~~K~vRraSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IV 1784 (1857)
++.|||++++||+|+|+|+|||++||++++++++++ .+..+...++|+||.+.++..++ +++++++++.+ ..++
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~-~~~l~eal~~~----~~v~ 78 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGL-FPTVAEAIRDC----DYVF 78 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEE-ESSHHHHHTTC----SEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEE-eCCHHHHHHhC----CeEE
Confidence 578999999999999999999999999999999886 44434444479999988887765 57999998654 3688
Q ss_pred EEEecCCCCCCccccC---------------CCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHH
Q 000208 1785 GLEQTANSIPLDQYMF---------------PKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALW 1849 (1857)
Q Consensus 1785 Ate~t~gSv~L~d~~f---------------pkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLY 1849 (1857)
|++.+ +.++.+..+ .+|++||||||+.||++++++.||.+|+|||.|.++|||||+|+||++|
T Consensus 79 att~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~~~~~SLNva~A~aI~lY 156 (249)
T 3onp_A 79 ATTAR--GRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAY 156 (249)
T ss_dssp EEESS--CCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCCTTCCCCCHHHHHHHHHH
T ss_pred EEcCC--CCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCCCCCCceeHHHHHHHHHH
Confidence 88764 345555444 3599999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 000208 1850 EYTRQQ 1855 (1857)
Q Consensus 1850 EltRQr 1855 (1857)
|+.||+
T Consensus 157 E~~rq~ 162 (249)
T 3onp_A 157 EWRRQH 162 (249)
T ss_dssp HHHHC-
T ss_pred HHHHhh
Confidence 999986
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.93 E-value=1.8e-26 Score=253.70 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=122.2
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCCCCCc--------------------hhHHhhcCCCceeeeEEEe
Q 000208 1705 QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIADANILHD--------------------KQFQLISVTAEKWVPIVEV 1764 (1857)
Q Consensus 1705 ~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~~~~~--------------------K~vRraSmGA~~wLPI~eV 1764 (1857)
.++.|||++++||+|+|+|+|||++||+++|++++++.... +.+.++|+||.++++..++
T Consensus 16 ~~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v 95 (223)
T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI 95 (223)
T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE
T ss_pred CCEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEE
Confidence 47999999999999999999999999999999987663221 2455679999999998776
Q ss_pred ccCCHHHHHHHHhhCCCEEEEEEecCCCCC------------Cccc-cCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcC
Q 000208 1765 PVNSIKHFLERKKHEGFSVLGLEQTANSIP------------LDQY-MFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQ 1831 (1857)
Q Consensus 1765 ~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~------------L~d~-~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM 1831 (1857)
++++.++++.+ +.++|++.+.+... +.++ ++.+|++||||+|+.||++++++.||.+|+|||
T Consensus 96 -~~~l~eal~~~----~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm 170 (223)
T 3ic6_A 96 -VATLDEALADT----TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTING 170 (223)
T ss_dssp -ESCHHHHHTTE----EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCC
T ss_pred -eCCHHHHHHhC----CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecC
Confidence 57999887654 57999987543321 1122 335899999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhc
Q 000208 1832 LGVVRSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1832 ~G~VrSLNVAVAAAIlLYEltRQr 1855 (1857)
.|.++|||||+|+||+|||+.||+
T Consensus 171 ~~~~~SLNva~A~aI~lye~~rq~ 194 (223)
T 3ic6_A 171 NPDYFSLNLAQAVQVVCYEIFSQT 194 (223)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCeeEHHHHHHHHHHHHHHhh
Confidence 999999999999999999999997
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=99.40 E-value=5.9e-13 Score=144.13 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhCCCcEEecCCCCCCchhHHhh------cCCC------ceeeeEEEeccCCHHHHHHHHhh---CCCEEE
Q 000208 1720 LAGLARTCEVFKASGLAIADANILHDKQFQLI------SVTA------EKWVPIVEVPVNSIKHFLERKKH---EGFSVL 1784 (1857)
Q Consensus 1720 LGAIiRTAeAFGVdgVIL~~~~~~~~K~vRra------SmGA------~~wLPI~eV~~~dL~e~Le~LK~---~Gy~IV 1784 (1857)
+|.|+|+|..||++.++++.+........++. +.|+ ..-+...++ +++++++++...+ .+..+|
T Consensus 31 ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~v-v~sL~eAl~~~~~~~g~~p~vv 109 (192)
T 3dcm_X 31 VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKL-KSYLEDVLEDIESVEGERPLIF 109 (192)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEE-ESSHHHHHHHHHHHHSSCCEEE
T ss_pred HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeE-ECCHHHHHHHHHhhcCCccEEE
Confidence 99999999999999999999764333223332 4555 344555555 5799999988753 567889
Q ss_pred EEEecCCC--CCCccc-----cCCCCEEEEECCCCCCCCHHHHHhCCcEE-EEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1785 GLEQTANS--IPLDQY-----MFPKKTVLVLGREKEGIPVDIIHMLDACI-EIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1785 Ate~t~gS--v~L~d~-----~fpkKvALVLGNEg~GLS~elL~lcD~~V-~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
||+.+.+. .+..++ ...+|++||||+ +.||+++.++.||..+ .||..+...||||+.|++|+||++..
T Consensus 110 aTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~Ip~~~eY~~Lnl~~AVaIiLdrl~g 185 (192)
T 3dcm_X 110 FTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIG 185 (192)
T ss_dssp ECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCTTTTSSCCCCCHHHHHHHHHHHHTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccCCCCCCCCccCHHHHHHHHHHHHcC
Confidence 98865332 222221 235799999999 5899999999999999 79999999999999999999999865
No 17
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=91.70 E-value=0.3 Score=52.61 Aligned_cols=114 Identities=21% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCcEEecCCCCCCchhHHh--hcCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCcc---
Q 000208 1723 LARTCEVFKASGLAIADANILHDKQFQL--ISVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQ--- 1797 (1857)
Q Consensus 1723 IiRTAeAFGVdgVIL~~~~~~~~K~vRr--aSmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d--- 1797 (1857)
++-||-|||++++++.+...---..++. -.-|..|.+. . .++..+++.. |..|+-+++= +.++.+
T Consensus 24 V~LtARAfGA~~iil~~~D~~v~esv~dV~~rwGG~F~ve--~---~~w~~~i~~w---~G~VVHLTMY--G~~i~dvi~ 93 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIK--A---VSWKKLLREF---DGLKVHLTMY--GIPLPQKLE 93 (178)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHCSCCEEE--E---CCHHHHHHHC---CSEEEEEEEE--EEEHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCCCHHHHHHHHHHHHhcCCceEEE--e---cCHHHHHHHc---CCEEEEEecC--CCchHHHHH
Confidence 6789999999999998753111111222 1346667766 3 4888888766 7788877763 344433
Q ss_pred -ccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 000208 1798 -YMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYT 1852 (1857)
Q Consensus 1798 -~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYElt 1852 (1857)
+.-.++..+|+|.|+ +|.++-+.||..|.|--++--+ ..|.||+|-.+.
T Consensus 94 ~Ir~~~~iLvVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~ 143 (178)
T 2o3a_A 94 EIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE----VAALAVFLDRVL 143 (178)
T ss_dssp HHHTCSEEEEEEC------CTTHHHHSSEEEESSSSCCCH----HHHHHHHHHHHT
T ss_pred HhhcCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhh
Confidence 223689999999998 9999999999999997665422 356777776665
No 18
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=90.50 E-value=0.35 Score=52.90 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCcEEecCCC-CCCchhHHhh--cCCCceeeeEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccc-
Q 000208 1723 LARTCEVFKASGLAIADAN-ILHDKQFQLI--SVTAEKWVPIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQY- 1798 (1857)
Q Consensus 1723 IiRTAeAFGVdgVIL~~~~-~~~~K~vRra--SmGA~~wLPI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~- 1798 (1857)
++-||-|||++++++.+.. .---..++.+ .-|..|.+... .++..+++.. |..|+-+++= +.++.+.
T Consensus 21 V~LtARAfGA~~iil~~~~D~~v~esv~dV~~rWGG~F~ve~~----~~wk~~ik~w---gG~VVHLTMY--G~~i~dvi 91 (201)
T 2yy8_A 21 VALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFN----RNWRKVMKEF---TGVKVHLTMY--GLHVDDVI 91 (201)
T ss_dssp HHHHHHHTTCSEEEESSSCCHHHHHHHHHHHHHHCSCCBCCBC----SCHHHHHHHC---CSEEEEEEEE--EEEHHHHH
T ss_pred HHHHHHHhcCCeEEEcCCcChhHHHHHHHHHHhcCCceEEEEC----CCHHHHHHhc---CCEEEEEecC--CCchHHHH
Confidence 6789999999999998863 1111112221 34566665554 4888887766 7788887763 3444332
Q ss_pred ---c----CCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHHHHHHHHHHH
Q 000208 1799 ---M----FPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTR 1853 (1857)
Q Consensus 1799 ---~----fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAAAIlLYEltR 1853 (1857)
. -.++..+|+|.|+ +|.++-+.||..|.|--++--+ ..|.||+|-.+..
T Consensus 92 ~eIr~~~~~~~~iLVVVGaeK--VP~evYelADyNVaVgnQPHSE----VAALAvFLDrl~~ 147 (201)
T 2yy8_A 92 EELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----VAALAVLLDRLLE 147 (201)
T ss_dssp HHHHHHHHTTCCEEEEECSSC--CCHHHHHHCSEEEESSSSCCCH----HHHHHHHHHHHTT
T ss_pred HHHHhhcccCCCEEEEECCCc--CCHHHHhhcCcceeeCCCChHH----HHHHHHHHHHhcC
Confidence 2 1578999999998 9999999999999997665422 3577888877654
No 19
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=78.65 E-value=5.1 Score=44.27 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=70.0
Q ss_pred eEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHH----HHHhCCcEEEEcCCCCC
Q 000208 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVD----IIHMLDACIEIPQLGVV 1835 (1857)
Q Consensus 1760 PI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~e----lL~lcD~~V~IPM~G~V 1835 (1857)
|...+.-.++++.++++++.| ++|-+.. ++.++....++++.++|+|. ..|++++ +.+.++..+.| |.
T Consensus 105 pgi~v~~~sle~ll~e~~~~~-~v~~L~E--~G~~i~~~~~~~~~~fvlGd-H~~f~~e~~~~l~~~~~~~iSi---gp- 176 (197)
T 2qmm_A 105 SGVYVSRKGLEELIEELSEKY-SIIYLKE--DGVDISNAQLPPNPLFVIGD-HEGLTEEQEKVVERYAALKLSL---SP- 176 (197)
T ss_dssp TTEEEECCCHHHHHHHHHHHS-EEEEEEE--EEEEGGGSCCCSSEEEEEEC-TTCCCHHHHHHHHTTCSEEEEC---CS-
T ss_pred CCEEEECCCHHHHHHHhhcCC-cEEEEcC--CCCCCchhhcCCCCEEEEeC-CCCCCHHHHHHHHHhcCeEEEE---CC-
Confidence 555554578999999987655 5777764 45777777788899999999 7899999 67788899998 33
Q ss_pred CcccHHHHHHHHHHHHHHhc
Q 000208 1836 RSLNVHVSGAIALWEYTRQQ 1855 (1857)
Q Consensus 1836 rSLNVAVAAAIlLYEltRQr 1855 (1857)
.+|=..++++++-|++-|.+
T Consensus 177 ~~L~A~~vi~~vh~~ld~~~ 196 (197)
T 2qmm_A 177 LSLLAEQCVVIAHHHLDRLQ 196 (197)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhhcc
Confidence 79999999999999986543
No 20
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=69.28 E-value=8.4 Score=43.74 Aligned_cols=118 Identities=6% Similarity=0.129 Sum_probs=70.3
Q ss_pred CcEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecC--CCCC---CchhHHhhcC-----CCceeeeEEEeccCCHHHHHH
Q 000208 1705 QQFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD--ANIL---HDKQFQLISV-----TAEKWVPIVEVPVNSIKHFLE 1774 (1857)
Q Consensus 1705 ~~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~--~~~~---~~K~vRraSm-----GA~~wLPI~eV~~~dL~e~Le 1774 (1857)
.++.++.-.+....-+=-+++-|--+||+.++... .+.. .....+++.. .-.-|+|-+.. +.++.++++
T Consensus 77 ~~i~L~~al~K~~dr~d~iiqKatELGV~~I~p~~s~rs~k~~~k~eRw~~I~~eAaeQs~R~~~P~v~~-~~~~~~~l~ 155 (257)
T 3kw2_A 77 DRITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRV-NIPIQTVIA 155 (257)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEE-EEEHHHHHH
T ss_pred CceEEEEecCCCcchHHHHHHHHHhhCCCEEEEEEeecchhhhhhHHHHHHHHHHHHHHcCCCcCCEecC-cCCHHHHHh
Confidence 35666654322123355679999999999998753 2221 1122222222 22457887764 468888887
Q ss_pred HHhhCCCEEEEEEecC------CCCCCcccc--CCCCEEEEECCCCCCCCHHHHHhCC
Q 000208 1775 RKKHEGFSVLGLEQTA------NSIPLDQYM--FPKKTVLVLGREKEGIPVDIIHMLD 1824 (1857)
Q Consensus 1775 ~LK~~Gy~IVAte~t~------gSv~L~d~~--fpkKvALVLGNEg~GLS~elL~lcD 1824 (1857)
.+...+..+++..... ...++.+.. .++++++++|.|| |.+++.++.+-
T Consensus 156 ~~~~~~~~li~~~~e~~~~~~~~~~~l~~~~~~~~~~v~l~IGPEG-Gfs~~Ei~~~~ 212 (257)
T 3kw2_A 156 DTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEG-DFSPSEVESAL 212 (257)
T ss_dssp HSCTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTT-CCCHHHHHHHH
T ss_pred hccccCCEEEEEcccccccccccccchhHhhccCCCcEEEEECCCC-CCCHHHHHHHH
Confidence 6544555566652211 223343322 2578999999999 99999887653
No 21
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=58.96 E-value=23 Score=40.43 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=79.8
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC--CC--CCc-------hhHHhhcC-----CCceeeeEEEeccCCH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA--NI--LHD-------KQFQLISV-----TAEKWVPIVEVPVNSI 1769 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~--~~--~~~-------K~vRraSm-----GA~~wLPI~eV~~~dL 1769 (1857)
++.++. .+-++..+--+++-|--+||+.|+.... +. +.. ...+++.. .-.-++|-+.. +.++
T Consensus 82 ~v~L~~-al~K~~r~e~ilqkatELGV~~I~p~~s~Rsv~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~-~~~~ 159 (268)
T 1vhk_A 82 KVYIAS-GLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMD-VHSF 159 (268)
T ss_dssp EEEEEE-ECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECC-CBCH
T ss_pred cEEEEE-eeecCccHHHHHHHHHHhCcCEEEEEEeeeeeeecccchhhhHHHHHHHHHHHHHHHcCCCCCcEEec-CCCH
Confidence 455555 4557788999999999999999988653 22 111 12222222 22347887764 5789
Q ss_pred HHHHHHHhhCCCEEEEEEecCC-CCCC------ccccCCCCEEEEECCCCCCCCHHHHHhCCc--EEEEcCCC-CCCccc
Q 000208 1770 KHFLERKKHEGFSVLGLEQTAN-SIPL------DQYMFPKKTVLVLGREKEGIPVDIIHMLDA--CIEIPQLG-VVRSLN 1839 (1857)
Q Consensus 1770 ~e~Le~LK~~Gy~IVAte~t~g-Sv~L------~d~~fpkKvALVLGNEg~GLS~elL~lcD~--~V~IPM~G-~VrSLN 1839 (1857)
.++++.....+..+++-+.... ..++ ....-.+++++++|.|| |.+++.++.+.. ...+-.-. ..|+=-
T Consensus 160 ~~~l~~~~~~~~~lv~~e~~~~~~~~l~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~~~~G~~~vsLG~rILRtET 238 (268)
T 1vhk_A 160 QQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGPRILRTET 238 (268)
T ss_dssp HHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTT-CCCHHHHHHHHHTTCEEECCCSSCCCTTT
T ss_pred HHHHhhCccCCeEEEEecCcccccccccccccchhccCCCcEEEEEcCCC-CCCHHHHHHHHHCCCEEecCCCCeeehHH
Confidence 9998866443455555432111 1123 22321237999999999 999998765422 33333322 234434
Q ss_pred HHHH-HHHHHHH
Q 000208 1840 VHVS-GAIALWE 1850 (1857)
Q Consensus 1840 VAVA-AAIlLYE 1850 (1857)
.+++ .|++.|.
T Consensus 239 A~i~als~l~~~ 250 (268)
T 1vhk_A 239 APLYALSAISYQ 250 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4433 3455554
No 22
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=58.06 E-value=34 Score=38.20 Aligned_cols=87 Identities=15% Similarity=0.178 Sum_probs=68.6
Q ss_pred eEEEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHH---H-HHhCCcEEEEcCCCCC
Q 000208 1760 PIVEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVD---I-IHMLDACIEIPQLGVV 1835 (1857)
Q Consensus 1760 PI~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~e---l-L~lcD~~V~IPM~G~V 1835 (1857)
|...+.-.++++.++++.+.|..+|-+... +.++....+ .+.++|+|- ..|++++ . .+.++..+.| |.
T Consensus 116 pgi~v~~~sle~ll~e~~~~~~~v~~L~E~--G~~i~~~~~-~~~~fvlGd-H~~f~~e~~~~L~~~~~~~iSi---gp- 187 (211)
T 3aia_A 116 PGIYVRRLGFRNLVLEKLEEGKNIYYLHMN--GEDVENVDI-ENPVFIIGD-HIGIGEEDERFLDEIKAKRISL---SP- 187 (211)
T ss_dssp TTEEEECCCHHHHHHHHHHTTCEEEEEEEE--EEEGGGCCC-CSEEEEEEC-SSCSCHHHHHHHHHTTCEEEEC---CS-
T ss_pred CCeEEEcCCHHHHHHHHhhcCCcEEEEcCC--CCCCccccc-CCcEEEEEC-CCCCCHHHHHHHHhhCCeEEEE---CC-
Confidence 555555578999999988777678887753 566666667 788999999 7799999 5 4567888888 22
Q ss_pred CcccHHHHHHHHHHHHHHh
Q 000208 1836 RSLNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1836 rSLNVAVAAAIlLYEltRQ 1854 (1857)
.+|=..++++++-+|+-|.
T Consensus 188 ~~L~A~hvi~~vh~~LD~~ 206 (211)
T 3aia_A 188 LELHANHCITIIHNVLDKK 206 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhccc
Confidence 7999999999999998654
No 23
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=56.27 E-value=27 Score=39.05 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=58.1
Q ss_pred EEeccCCHHHHHHHHhhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhC----CcEEEEcCCCCCCc
Q 000208 1762 VEVPVNSIKHFLERKKHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHML----DACIEIPQLGVVRS 1837 (1857)
Q Consensus 1762 ~eV~~~dL~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lc----D~~V~IPM~G~VrS 1837 (1857)
+.+.-.++++.+++++++| ++|-+.. ++.++.++.+|++.++|+| ...|+|++..+.. +..|.+ +-.+
T Consensus 116 i~v~~~~fe~ll~e~~~~~-~ly~L~e--~G~di~~~~~~~~~~FvLg-DH~g~~~eee~~L~~~~~~~iSl----GP~~ 187 (208)
T 2qwv_A 116 LTVRTISFEALLGELAEHH-SLYMMDK--KGDSIRDIKIGPNPCFILT-DHIPMPKKSGNSMKRLGVEKISL----GPKM 187 (208)
T ss_dssp EEEECCCHHHHHHHHHTTS-EEEEEEE--EEEETTTSCCCSSEEEEEC-C----------CTTTTTCEEEEC----CSSC
T ss_pred EEEecCCHHHHHHHHHhcC-cEEEEeC--CCcCHhhccCCCCCEEEEc-CCCCCCHHHHHHHHhcCCeEEEe----CchH
Confidence 3333468999999997775 5777664 5689999999999999999 7889999977654 456776 3368
Q ss_pred ccHHHHHHHHHHHHHHh
Q 000208 1838 LNVHVSGAIALWEYTRQ 1854 (1857)
Q Consensus 1838 LNVAVAAAIlLYEltRQ 1854 (1857)
|=.+++.+++-+|+-|.
T Consensus 188 l~A~hcI~~vhn~LD~~ 204 (208)
T 2qwv_A 188 LFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998553
No 24
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=38.88 E-value=12 Score=40.17 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=38.9
Q ss_pred ccCCCCCC--Ccchhhhhc----cCCCChhHHHHHHhhhhHHHhhhcCCCCccchhh--hhHHHHHHHHHHH
Q 000208 21 KLVPPAAI--PPMLDCILT----STGSSASAIFFSLLDLSKDAIKEGQKLDSDQCNY--IASMVGALCHLLK 84 (1857)
Q Consensus 21 ~~vp~~a~--p~~~dc~l~----st~~sps~lf~~ll~~~~~~~~~~~~~~~~~~~~--~~s~~~~~chll~ 84 (1857)
|.+|++-+ |+ .||.|+ +|+.|+.+|++.|-..+||-.-++ .+-.++ ..=+..||||.+.
T Consensus 50 R~~~~S~~P~P~-~~CLL~Ais~at~~s~~~LW~~Lc~~lPDSlL~n----~ei~~~GLSTDhltaLa~~~~ 116 (160)
T 4a5u_A 50 RSLPSNHLPQPT-LNCLLSAVSDQTKVSEEHLWESLQTILPDSQLSN----EETNTLGLSTEHLTALAHLYN 116 (160)
T ss_dssp ECSCCCCCCCCS-SCHHHHHHHHHHCCCHHHHHHHHTTTSCGGGTSS----HHHHHHCCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCcc-hhhhHHHHhhccCCCHHHHHHHHHHhCchhhcCc----hhhhhcCCcHHHHHHHHHHHh
Confidence 45666665 77 999995 788999999999987776632210 011111 2335889998875
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=35.72 E-value=1.3e+02 Score=36.93 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHhhhcccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCchhh-----hhhhhhhccCC
Q 000208 1385 MICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVA-----EQLVPILRDYD 1448 (1857)
Q Consensus 1385 tLCvLsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~lle-----~~Llp~L~D~n 1448 (1857)
+|..|+....+++...+...+.+++. ...|.||+-.=+.+.+++..+|+.+. +.+..+|.|.+
T Consensus 106 AL~~L~~i~~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 106 AVRTMGCIRVDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp HHHHHHTCCSGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 35666666788888888888888886 67899999999999999999999776 45666666655
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=34.39 E-value=3.1e+02 Score=29.21 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhhcccChh---HHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCC-chhhhhhhhhhccCCCCccc
Q 000208 1378 RKVRAWQMICILSRFVDND---IVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFP-SLVAEQLVPILRDYDMRPQA 1453 (1857)
Q Consensus 1378 ~KlRlWQtLCvLsp~l~~d---~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P-~lle~~Llp~L~D~nlrpqv 1453 (1857)
.+..+-++|-.|+..+.++ .+..+...+++.+.. ..+.||....-.+-.+....+ ..+-+.+...+.+.+ |++
T Consensus 73 V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~--~~v 149 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKN--PSV 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSC--HHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC--hHH
Confidence 4455666666666655554 466778888888765 458899988877777766543 223345666666554 455
Q ss_pred hHHHHHHHHHHHHhhchh-hHHHHHhhhhhhhccccccCCchhHHHHHHHHHHHHh
Q 000208 1454 LSSYVFIAANVILHASKA-VQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLC 1508 (1857)
Q Consensus 1454 lsS~v~Iaa~VLl~~~~~-~q~~~L~~lL~~IlPw~tSh~~sVR~fAqllv~~iL~ 1508 (1857)
-...+-..+.++...... ....++..+++.+++.+...+.-||..|.-.+-.+..
T Consensus 150 r~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 150 KSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 444444444444443211 1135678899999999999999999999887666544
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=30.34 E-value=7e+02 Score=31.64 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhcccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCch-------hhhhhhhhhccCCCC
Q 000208 1378 RKVRAWQMICILSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSL-------VAEQLVPILRDYDMR 1450 (1857)
Q Consensus 1378 ~KlRlWQtLCvLsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~l-------le~~Llp~L~D~nlr 1450 (1857)
.|..+=++|-.|+..+.++.+..+...+.+.+... .+.+|.-.=+.+-.+....+.. +-..+++.+.|.+
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~-- 413 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-- 413 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS--
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC--
Confidence 34456677777777676777777777777776544 5888876555555555443322 1235666667665
Q ss_pred ccchHHHHHHHHHHHHhhchhhHHHHHhhhhhhhccccccCCchhHHHHHHHHHHHHhh
Q 000208 1451 PQALSSYVFIAANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCK 1509 (1857)
Q Consensus 1451 pqvlsS~v~Iaa~VLl~~~~~~q~~~L~~lL~~IlPw~tSh~~sVR~fAqllv~~iL~k 1509 (1857)
+.+-.......+.+-...........+.++++.++..+.+.+..||..|-.++..+.+.
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 33333222222222221111112345667777888777788899999999888776654
No 28
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=28.36 E-value=4.7e+02 Score=31.71 Aligned_cols=109 Identities=22% Similarity=0.301 Sum_probs=65.2
Q ss_pred hhcccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCchhh-------hhhhhhhccCCCCccchHHHHHHH
Q 000208 1389 LSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLVA-------EQLVPILRDYDMRPQALSSYVFIA 1461 (1857)
Q Consensus 1389 Lsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~lle-------~~Llp~L~D~nlrpqvlsS~v~Ia 1461 (1857)
..+++|..++.++++ ++..--|-=|.|+..+.-+|+.+++.+-. +.++....+ .-+..-++.++-|.
T Consensus 167 ~k~~id~~Fi~~Ll~-----lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye-~e~~~GIaeLLeil 240 (392)
T 2jak_A 167 AKKYIDQKFVLQLLE-----LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEIL 240 (392)
T ss_dssp HTTTSCHHHHHHHHH-----HTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTS-SCCCSCHHHHHHHH
T ss_pred hhhhCCHHHHHHHHH-----HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHH
Confidence 345566666655554 45566788889999999999999886531 233333332 23556677899999
Q ss_pred HHHHHhhchhhHHHHHhhhhhhhccccccCCchhHHHHHHHHHH
Q 000208 1462 ANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQ 1505 (1857)
Q Consensus 1462 a~VLl~~~~~~q~~~L~~lL~~IlPw~tSh~~sVR~fAqllv~~ 1505 (1857)
++++..-.......|..=+...++|.-.+.... .|.+-+.++
T Consensus 241 gsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~--~y~~qL~yc 282 (392)
T 2jak_A 241 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS--VYHPQLAYC 282 (392)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG--GTHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH--HhHHHHHHH
Confidence 998886542111122222445778877765433 354444443
No 29
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=28.07 E-value=52 Score=37.29 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=65.1
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC--CC--CCchh-------HHhhcCC-----CceeeeEEEeccCCH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA--NI--LHDKQ-------FQLISVT-----AEKWVPIVEVPVNSI 1769 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~--~~--~~~K~-------vRraSmG-----A~~wLPI~eV~~~dL 1769 (1857)
++.++. .+-++..+--+++-|--+||+.|+.... +. +..+. .+++... -.-++|-+.. +.++
T Consensus 81 ~l~L~~-al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~~~kk~~Rw~~i~~eAaeQs~R~~iP~v~~-~~~~ 158 (257)
T 1vhy_A 81 KIHLGQ-VISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRP-LMKL 158 (257)
T ss_dssp CEEEEE-EC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECC-CEEH
T ss_pred eEEEEE-ecCchHHHHHHHHHHHhhCcCEEEEEEeEEEEEeccchhhhhHHHHHHHHHHHHHHHcCCCcCcEEec-cCCH
Confidence 455554 3456788899999999999999988643 32 22111 1222222 2346777764 4678
Q ss_pred HHHHHHHhhCCCEEEEEEecCCCCCCcccc--CCCCEEEEECCCCCCCCHHHHHhC
Q 000208 1770 KHFLERKKHEGFSVLGLEQTANSIPLDQYM--FPKKTVLVLGREKEGIPVDIIHML 1823 (1857)
Q Consensus 1770 ~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~--fpkKvALVLGNEg~GLS~elL~lc 1823 (1857)
.++++.. ..+..+++-+ . ...++.+.. -++++++++|.|| |.+++.++.+
T Consensus 159 ~~~l~~~-~~~~~l~~~~-~-~~~~l~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~ 210 (257)
T 1vhy_A 159 QDWCAEN-DGALKLNLHP-R-AHYSIKTLPTIPAGGVRLLIGSEG-GLSAQEIAQT 210 (257)
T ss_dssp HHHHTCC-SSCEEEEECT-T-CCCBGGGCCCCCTTCEEEEECCTT-CCCHHHHHHH
T ss_pred HHHHhcC-CCCcEEEEcC-C-CccchhhhhccCCCeEEEEEcCCC-CCCHHHHHHH
Confidence 8877632 2244444432 2 223333331 2357999999999 9999987654
No 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=23.66 E-value=5.8e+02 Score=31.69 Aligned_cols=137 Identities=11% Similarity=0.038 Sum_probs=74.4
Q ss_pred HHhHHHHHHHhhhc------CCChhHHHHHHHHHHHHHhhCCchhhhhhhhhhccCCC--CccchHHHHHHHHHHHHhhc
Q 000208 1398 VGQVTHFLHISLYR------NNLPSVRQYLETFAITIYLKFPSLVAEQLVPILRDYDM--RPQALSSYVFIAANVILHAS 1469 (1857)
Q Consensus 1398 v~~v~d~I~~aL~~------nNlPSVRyYIEwFiI~il~k~P~lle~~Llp~L~D~nl--rpqvlsS~v~Iaa~VLl~~~ 1469 (1857)
+..+...+...+.. ...++||.-....+..+...+|+.+-..++|.+...-. .+.+-...+...+.+.....
T Consensus 322 ~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 401 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence 34555556555543 24578998888888888877775544455665532211 12222223322232222211
Q ss_pred hhhHHHHHhhhhhhhccccccCCchhHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHhhHHHhhhcC
Q 000208 1470 KAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQVLCKLFPTLDFGTSQKMPLEKSCFEDLKSYLAKN 1539 (1857)
Q Consensus 1470 ~~~q~~~L~~lL~~IlPw~tSh~~sVR~fAqllv~~iL~k~w~~l~~~~s~~~~le~~~l~~l~syL~~N 1539 (1857)
...-..++.++++.+++.+.+.+..||.-+-.++-.+...+.+.+.. ...-..++..+...+.++
T Consensus 402 ~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-----~~~~~~~l~~l~~~l~~~ 466 (861)
T 2bpt_A 402 KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP-----QQHLPGVVQACLIGLQDH 466 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT-----TTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC-----HHHHHHHHHHHHHHhccC
Confidence 11113567788888999888999999987776655544432221100 111224566666667665
No 31
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=23.56 E-value=1.2e+02 Score=34.18 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=69.9
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecC--CCC--CCch-------hHHhhcCC-----CceeeeEEEeccCCH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIAD--ANI--LHDK-------QFQLISVT-----AEKWVPIVEVPVNSI 1769 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~--~~~--~~~K-------~vRraSmG-----A~~wLPI~eV~~~dL 1769 (1857)
.+.++. .+-++..+=-+++-|--+||+.++... .+. +..+ ..+++... -..|+|-+.. +.++
T Consensus 79 ~v~L~~-al~K~~r~e~ilqkatELGv~~I~p~~t~rsv~~~~~~k~~~k~~Rw~~I~~eAaeQs~R~~iP~v~~-~~~~ 156 (251)
T 4e8b_A 79 HIHLGQ-VMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRP-AMDL 156 (251)
T ss_dssp EEEEEE-ECCSSSHHHHHHHHHHHTTCCEEEEEECTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCBCC-CEEH
T ss_pred eEEEEE-EeechhHHHHHHHHHHhhCCCEEEEEEeeeEEeecchhhhhhHHHHHHHHHHHHHHhcCCCcCcEECC-cCCH
Confidence 444444 456788899999999999999998753 332 2211 11222221 2347776653 4578
Q ss_pred HHHHHHHhhCCCEEEEEEecCCCCCCccccC-CCCEEEEECCCCCCCCHHHHHhC
Q 000208 1770 KHFLERKKHEGFSVLGLEQTANSIPLDQYMF-PKKTVLVLGREKEGIPVDIIHML 1823 (1857)
Q Consensus 1770 ~e~Le~LK~~Gy~IVAte~t~gSv~L~d~~f-pkKvALVLGNEg~GLS~elL~lc 1823 (1857)
.++++.. ..+..++..+ ....++.+... ++++++++|.|| |.+++.++.+
T Consensus 157 ~~~l~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~IGPEG-Gfs~~Ei~~~ 207 (251)
T 4e8b_A 157 EAWCAEQ-DEGLKLNLHP--RASNSINTLPLPVERVRLLIGPEG-GLSADEIAMT 207 (251)
T ss_dssp HHHHHCC-CSSEEEEECT--TCSCBGGGSCSCCCEEEEEECCTT-CCCHHHHHHH
T ss_pred HHHHhhc-CcCceEeech--hhhCchhhccccCCcEEEEECCCC-CCCHHHHHHH
Confidence 7777653 2344444322 23455555544 467899999999 9999988764
No 32
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=23.31 E-value=5e+02 Score=32.02 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=62.3
Q ss_pred hhcccChhHHHhHHHHHHHhhhcCCChhHHHHHHHHHHHHHhhCCchh---h----hhhhhhhccCCCCccchHHHHHHH
Q 000208 1389 LSRFVDNDIVGQVTHFLHISLYRNNLPSVRQYLETFAITIYLKFPSLV---A----EQLVPILRDYDMRPQALSSYVFIA 1461 (1857)
Q Consensus 1389 Lsp~l~~d~v~~v~d~I~~aL~~nNlPSVRyYIEwFiI~il~k~P~ll---e----~~Llp~L~D~nlrpqvlsS~v~Ia 1461 (1857)
..+++|..++.++++ ++..--|.=|.|+..+.-+|+-++..+- . +.++...-+ .-+..-++.++-|.
T Consensus 155 ~k~~id~~Fi~~Ll~-----lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e-~e~~nGIaeLLeil 228 (449)
T 2npp_B 155 AKKYIDQKFVLQLLE-----LFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE-TEHHNGIAELLEIL 228 (449)
T ss_dssp GGGTSCHHHHHHHHH-----TTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHT-CSCCSCHHHHHHHH
T ss_pred hhhhCCHHHHHHHHH-----HcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHHHHHH
Confidence 344566666655555 5666777888888888888888887542 1 222222222 12445567788888
Q ss_pred HHHHHhhchhhHHHHHhhhhhhhccccccCCchhHHHHHHHHHH
Q 000208 1462 ANVILHASKAVQFRHLEDLLPPIVPLLTSHHHSLRGFTQLLVYQ 1505 (1857)
Q Consensus 1462 a~VLl~~~~~~q~~~L~~lL~~IlPw~tSh~~sVR~fAqllv~~ 1505 (1857)
++++..-.......|..=+...++|.-.+.+.. .|.+-+.++
T Consensus 229 gSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~--~y~~qL~yc 270 (449)
T 2npp_B 229 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS--VYHPQLAYC 270 (449)
T ss_dssp HHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG--GTHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHccchhH--HhHHHHHHH
Confidence 888876432111122222455778887765533 354444443
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=20.29 E-value=1.6e+02 Score=36.86 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=56.2
Q ss_pred HHHHhhhcccChhHHHhHHHHHHHhhh-cCCChhHHHHHHHHHHHHHhhCCchhh-----hhhhhhhccCCCCccchHHH
Q 000208 1384 QMICILSRFVDNDIVGQVTHFLHISLY-RNNLPSVRQYLETFAITIYLKFPSLVA-----EQLVPILRDYDMRPQALSSY 1457 (1857)
Q Consensus 1384 QtLCvLsp~l~~d~v~~v~d~I~~aL~-~nNlPSVRyYIEwFiI~il~k~P~lle-----~~Llp~L~D~nlrpqvlsS~ 1457 (1857)
=+|..|+...++++++.+...|.+++. ....|-||+..=..+.+++..+|+.+. +.+..+|.|.+ |.+..+.
T Consensus 130 lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d--~~V~~~a 207 (621)
T 2vgl_A 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH--LGVVTAA 207 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC--HHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC--ccHHHHH
Confidence 355777777788899999999999984 578999999999999999999998766 34555666655 4555444
Q ss_pred HH
Q 000208 1458 VF 1459 (1857)
Q Consensus 1458 v~ 1459 (1857)
+.
T Consensus 208 ~~ 209 (621)
T 2vgl_A 208 TS 209 (621)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=20.15 E-value=53 Score=36.55 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=67.0
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCC--CCCC---ch---hHHhhcC-----CCceeeeEEEeccCCHHHH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADA--NILH---DK---QFQLISV-----TAEKWVPIVEVPVNSIKHF 1772 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~--~~~~---~K---~vRraSm-----GA~~wLPI~eV~~~dL~e~ 1772 (1857)
++.++. .+-++..+--+++-|--+||+.++.... +... .+ ..++... .-.-|+|-+.. +.++.++
T Consensus 72 ~v~L~~-al~K~~r~e~ilqkatELGv~~I~p~~s~rs~~~~~~~~k~~Rw~~i~~eAaeQs~r~~~P~v~~-~~~~~~~ 149 (228)
T 1v6z_A 72 EVVLYV-ALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLP-PIPLKAV 149 (228)
T ss_dssp CEEEEE-ECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECC-CEEGGGC
T ss_pred cEEEEE-EecchHHHHHHHHHHHhhCCCEEEEEEEEEEEeeccccchHHHHHHHHHHHHHHcCCCcCcEEec-CCCHHHH
Confidence 455555 4557788999999999999999988643 2211 11 1222221 22346776653 3455555
Q ss_pred HHHHhhCCCEEEEEEecCCCCCCccccC-CCCEEEEECCCCCCCCHHHHHhCC
Q 000208 1773 LERKKHEGFSVLGLEQTANSIPLDQYMF-PKKTVLVLGREKEGIPVDIIHMLD 1824 (1857)
Q Consensus 1773 Le~LK~~Gy~IVAte~t~gSv~L~d~~f-pkKvALVLGNEg~GLS~elL~lcD 1824 (1857)
++ . +..+++-+. ...++.+... ++++++++|.|| |.+++.++.+.
T Consensus 150 l~---~-~~~l~~~~~--~~~~l~~~~~~~~~~~l~IGPEG-Gfs~~Ei~~~~ 195 (228)
T 1v6z_A 150 PQ---V-AQGLVAHVG--ATARVREVLDPEKPLALAVGPEG-GFAEEEVALLE 195 (228)
T ss_dssp CC---C-SSEEEECTT--CCCCHHHHCCTTSCEEEEECCTT-CCCHHHHHHHH
T ss_pred hh---C-CCEEEEeCC--CccchhhhccCCCcEEEEEcCCC-CCCHHHHHHHH
Confidence 54 2 556665432 1233333212 368999999999 99999877543
No 35
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=20.14 E-value=36 Score=38.21 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=68.2
Q ss_pred cEEEEEeCCCCCCCHHHHHHHHHHhCCCcEEecCCC-CC---CchhHHhhcCC-----CceeeeEEEeccCCHHHHHHHH
Q 000208 1706 QFVLVASLIDRIPNLAGLARTCEVFKASGLAIADAN-IL---HDKQFQLISVT-----AEKWVPIVEVPVNSIKHFLERK 1776 (1857)
Q Consensus 1706 ~LIVVLd~IdDP~NLGAIiRTAeAFGVdgVIL~~~~-~~---~~K~vRraSmG-----A~~wLPI~eV~~~dL~e~Le~L 1776 (1857)
++.++. .+-++..+--+++-|--+||+.++..... .. .....++.... -.-|+|-+. + .++.++++..
T Consensus 86 ~i~L~~-al~K~~r~e~ilqkatELGV~~I~p~~s~s~~~~~k~eRw~~i~~eAaeQs~R~~~P~v~-~-~~~~~~l~~~ 162 (234)
T 1z85_A 86 KLSVVV-PIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVS-F-LEKLEFSGNV 162 (234)
T ss_dssp CEEEEE-ECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCCCCHHHHHHHHHHHHHHHTCSBCCEEE-E-CCSCCCCSEE
T ss_pred eEEEEE-eccchHHHHHHHHHHHHhCCCEEEEEEEEEEechhhHHHHHHHHHHHHHHcCCCccceEE-e-ccHHHHHhhC
Confidence 455555 35577888889999999999999886542 11 11222222221 234667666 2 4555544321
Q ss_pred hhCCCEEEEEEecCCCCCCccccCCCCEEEEECCCCCCCCHHHHHhCCcEEEEcCCCCCCcccHHHHH
Q 000208 1777 KHEGFSVLGLEQTANSIPLDQYMFPKKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSG 1844 (1857)
Q Consensus 1777 K~~Gy~IVAte~t~gSv~L~d~~fpkKvALVLGNEg~GLS~elL~lcD~~V~IPM~G~VrSLNVAVAA 1844 (1857)
.+. ++ -+. . .. +.+.. ++++++++|.|| |.+++.++.+... ..|..=+-+=|=.-+|+
T Consensus 163 --~~~-lv-~e~-~-~~-l~~~~-~~~i~l~IGPEG-Gfs~~Ei~~~~~~-f~~vsLG~rILRtETA~ 220 (234)
T 1z85_A 163 --ITL-DL-DAS-Q-NL-LDANL-EGSITVVVGPEG-GFSEKERELLRSS-TTIVSLGKKILRFETAA 220 (234)
T ss_dssp --EEE-CC-----C-CC-SSSCC-CSSEEEEECCTT-CCCHHHHHHHHHH-SEEC------CCHHHHH
T ss_pred --CCe-EE-ECC-c-ch-hhhcc-CCCEEEEEcCCC-CCCHHHHHHHHhh-CeEccCCCCeeEhHHHH
Confidence 122 33 221 1 12 43333 468999999999 9999988765443 44444222334444443
Done!