BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000210
         (1854 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
            Complex With Ca2+ And Amppnp
          Length = 494

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 1562 IGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVAVDQLVSTFSSDP-SLIA 1620
            I    +V   +  +SLLS+       L S     D+ G G ++VD+L S F  D      
Sbjct: 407  IDYSEFVTVAMDRKSLLSKD-----KLESAFQKFDQDGNGKISVDELASVFGLDHLESKT 461

Query: 1621 FAQLCCDPSWNSRSDGDFQEFCLQVLFEC 1649
            + ++      N+  D DF+EFC  +   C
Sbjct: 462  WKEMISGIDSNNDGDVDFEEFCKMIQKLC 490


>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
            Cgd5_820
 pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
            Cgd5_820
          Length = 214

 Score = 32.7 bits (73), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 1596 DKSGLGSVAVDQLVSTFSSDP-SLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDR 1654
            D+ G G ++VD+L S F  D      + ++      N+  D DF+EFC  +   C S + 
Sbjct: 153  DQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLC-SNNE 211

Query: 1655 PAL 1657
            P L
Sbjct: 212  PQL 214


>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase From
            Leishmania Donovani.
 pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase From
            Leishmania Donovani
 pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase From
            Leishmania Donovani
 pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase From
            Leishmania Donovani
          Length = 236

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 1081 SVELEVPTILQSAALMSVGLL-----YE---GSAHPQTMQILLGEIGRRSGGDNVLEREG 1132
            +VELE+P +L   A  + GLL     YE     A P+ M I  G IG+   G  V+  + 
Sbjct: 90   AVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGK---GSRVVLIDD 146

Query: 1133 HAVSAGFALGLVALGRGEDAL 1153
               + G AL  + L    DA+
Sbjct: 147  VLATGGTALSGLQLVEASDAV 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,838,351
Number of Sequences: 62578
Number of extensions: 2168975
Number of successful extensions: 4595
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4593
Number of HSP's gapped (non-prelim): 15
length of query: 1854
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1741
effective length of database: 7,902,023
effective search space: 13757422043
effective search space used: 13757422043
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)