Query 000210
Match_columns 1854
No_of_seqs 265 out of 509
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 23:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1858 Anaphase-promoting com 100.0 8E-240 2E-244 2256.9 75.4 1432 114-1699 1-1461(1496)
2 KOG2005 26S proteasome regulat 100.0 9E-55 1.9E-59 520.1 22.7 458 974-1563 358-875 (878)
3 COG5110 RPN1 26S proteasome re 100.0 8E-46 1.7E-50 434.7 24.4 423 1011-1563 427-876 (881)
4 KOG2062 26S proteasome regulat 100.0 6.1E-35 1.3E-39 354.1 23.1 388 972-1484 351-756 (929)
5 COG5116 RPN2 26S proteasome re 99.9 1.6E-27 3.5E-32 282.3 18.3 384 973-1485 347-754 (926)
6 PF12859 Apc1: Anaphase-promot 99.6 1.3E-15 2.8E-20 154.5 9.7 104 110-227 1-105 (105)
7 KOG2062 26S proteasome regulat 99.5 6.7E-14 1.4E-18 172.6 13.2 254 1053-1398 364-636 (929)
8 COG5116 RPN2 26S proteasome re 99.2 2.3E-11 4.9E-16 146.7 8.8 276 1057-1421 363-650 (926)
9 KOG2005 26S proteasome regulat 99.0 5.6E-10 1.2E-14 137.4 9.9 102 1034-1151 419-523 (878)
10 COG5110 RPN1 26S proteasome re 98.1 4.2E-05 9.2E-10 93.7 15.7 333 997-1448 383-725 (881)
11 KOG1858 Anaphase-promoting com 97.6 6.9E-05 1.5E-09 101.2 6.4 422 976-1481 850-1365(1496)
12 PF01851 PC_rep: Proteasome/cy 95.9 0.0064 1.4E-07 50.5 2.8 28 1308-1335 1-28 (35)
13 PF01851 PC_rep: Proteasome/cy 93.1 0.12 2.6E-06 43.1 3.8 28 1093-1120 1-28 (35)
14 KOG0474 Cl- channel CLC-7 and 36.3 28 0.0006 45.8 3.2 62 983-1060 199-265 (762)
15 KOG2171 Karyopherin (importin) 33.6 1.3E+02 0.0027 42.6 8.7 142 1012-1165 329-481 (1075)
16 TIGR01909 C_GCAxxG_C_C C_GCAxx 21.6 1.5E+02 0.0032 31.7 5.0 39 1303-1341 41-79 (120)
No 1
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-240 Score=2256.88 Aligned_cols=1432 Identities=37% Similarity=0.570 Sum_probs=1198.3
Q ss_pred EEecceEEEEecCCceEeeecccceeecccCCcceeEeecc-CCCCCCCCCCCCcccccCcc-----------CCCCCcc
Q 000210 114 VLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIE-GNFPAHAPFPSSSRLLGARD-----------IPRPRRE 181 (1854)
Q Consensus 114 v~~~~~l~v~~~~Ge~~~~~lpf~Vs~vW~~~~GlLler~~-~~~~~~~~~~~~~pl~~~~~-----------~~~~~~~ 181 (1854)
|+|..|++||+.+||+++++|||+|.++|++++||||||.. ...+ +.+|+++++| +..+..|
T Consensus 1 vl~~~~~~~~~~~g~~~~~~~~f~v~~~~~~~~gllle~~~~~~~~------~~h~~~~~~~~~~~~iv~i~d~~~~~~e 74 (1496)
T KOG1858|consen 1 VLQLKALVIYDPNGEDSLVLLPFQVVNIWPTAYGLLLERHLFVYPG------SQHPLHEATPSGDSSIVMIYDAIKQQSE 74 (1496)
T ss_pred CcchhhheeeCCCCceeeeeccchHhhhccccceeEEecccccCCc------ccCcceecCCCCCcceEEeHHHHHHHHH
Confidence 58999999999999999999999999999999999999933 2222 3456666665 4445588
Q ss_pred cCCCCCCCCCCCCcccccccCccccccccccccCcccCCceeEEeecCceeccccCCCcEEEecCCccceeeeecCccee
Q 000210 182 IGHSPQNNYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEERGKLNIMRDFDERTIWTSDQIPLMASYNKGKMQH 261 (1854)
Q Consensus 182 ~g~~~~~~~~~~~t~~~~~~~~~~~~~s~f~L~hpldE~~p~~~~~~~r~~~~~d~~~~~i~ts~~~~l~~~y~~~~~~H 261 (1854)
+|..+.++|++..-+....+.++... .++++-.|++|.+|.-...+|.++...|++..+.|++ +-+++.+||..++.|
T Consensus 75 ~G~~~~~s~~~n~~~s~~S~~~aP~~-~~l~~~~p~~~~~~T~m~r~g~L~~s~~~~~~l~~~~-rk~~~ts~~q~~~sh 152 (1496)
T KOG1858|consen 75 VGNTPNQSFHLNVFSSGKSTPAAPSQ-QSLSLARPSDRTLSTDMSRRGCLNISLDPDTGLKFAG-RKSLGTSHDQIKFSH 152 (1496)
T ss_pred hcCCCccceecccCCCCCCcCcChhh-ccccccCcccccCcccchhccccccccCccccccccC-ccccCccccccccee
Confidence 89999999999988888777776665 7899999999999999999999999999999999998 778999999999999
Q ss_pred EEEEeeeeccCccccccccCCCCCCCCCCccceeeEEecC-----CCCCCCccEEEeeccCCCCcEEEeeccccceeeEE
Q 000210 262 SVWVAEVVNCIPEVASASLSDVVPAGVLPKQFLFRRIWQG-----KGAQTSASKVFLATDDDAAPIICLLLQEQKKLLAL 336 (1854)
Q Consensus 262 svw~~r~~ss~~~~s~~ss~~~~P~~~~~~eicle~iWte-----~~~~s~AsKvFlttDl~g~~~LCfL~~~~~qL~~v 336 (1854)
+.|..-..+++-..++. +..++.+|.|++|+||| ++...+|+|+|+++|++|+++.||+++++.+++.+
T Consensus 153 s~~~~~~~~sn~~~~~~------~sr~I~pe~c~~~~~te~~~~~~~a~r~ask~firtd~~~~~~n~~l~~g~~k~~~~ 226 (1496)
T KOG1858|consen 153 STQHSTHIDSNKLLSNP------RSRGIVPEVCLECLWTENRGPASGASREASKVFIRTDLSGQTFNCFLVAGFVKLSGL 226 (1496)
T ss_pred eEEeeccCCccccccCc------ccccCCccccceeeeeeeccchhhhhhhhchhhhhcccccceehhhhhhhhhhhhcc
Confidence 99997665555444332 23366778999999999 45779999999999999999999999998888788
Q ss_pred EeeeccccceeecccCCCcccccccccccceeecccccccccccccceEEecCCCeEEEeccceeeeeeccCCCcccCcc
Q 000210 337 RLQSVEINNEILFDIKPDMSWSIPAVAAAPVIVTRPRVKVGLLQYTDIVVLAPDNALLLYSGKQCLCRYMLPSSLRKGNL 416 (1854)
Q Consensus 337 rlq~~e~~~~lif~~~~~~~~~I~a~~Aapvv~tr~~~~ig~l~~~~IlVL~p~g~L~LYsG~~~v~k~~lP~~l~~~~~ 416 (1854)
-.+.+++.+.+-|..++|....+..++ +++.++..++++..+...+.|+.|...+.++.| ++++....|+.+....+
T Consensus 227 g~~tv~i~s~i~~~~~kd~~v~~~kv~--~~~t~~~~i~~~~vs~~gvsV~spe~~l~~~fg-~~Ll~~~~P~~~~e~~l 303 (1496)
T KOG1858|consen 227 GWSTVEIFSHISFEGAKDSTVAVSKVF--LSSTTSNPIPAPSVSLDGVSVKSPEKFLLMLFG-EVLLRFPAPEFLDESKL 303 (1496)
T ss_pred ccceeeecccccccCCCCccceecccc--eeeeecccccccccccccceeechhhhhhhhhc-ccccccCCcchhhhhhh
Confidence 788888888888888888765556554 566667677777777888999999999999999 78889999988755443
Q ss_pred cccccccccccccCCceeeeeccccCCeEEEEEcCCeEEEEeecCCCCcHHHHHHHHHHHHhcChhhHHHHH-HHHhhcc
Q 000210 417 SRSLEFSEAASVSHDLKIIGLADAVEGRINVMVNTGQIFRCELRQNPSSSLTNDCITAMAEGLSSNFYNYFL-VLLWGDN 495 (1854)
Q Consensus 417 ~~~~~f~~~~s~~~d~~I~~L~D~V~nRVTL~~s~G~m~RisLp~~psS~LV~~CL~ALr~iLp~~~~~~~l-v~~W~~~ 495 (1854)
++...-....+-.-++.|.+++|+|.+++|++.++|+|+|+++|..++|+|++.|++++|++|+++.+.+++ |+||..+
T Consensus 304 ~~~g~s~~~t~~~~~~~i~S~rd~V~~ev~L~~s~g~m~r~tl~~~~~S~L~~~c~~~ik~~Ls~dl~~~f~~Vkw~~~~ 383 (1496)
T KOG1858|consen 304 HDSGLSADCTSQQLKIYILSLRDPVSNEVTLERSNGRMLRITLPELATSELMLTCLATIKRDLSKDLYVQFLSVKWYVDH 383 (1496)
T ss_pred hhcccccccccchhceeeeccccccccceeeeccCceEEEeeecccchhHHHHHhHHhHhhhccHHHHhhhheeeecccc
Confidence 332221122223345789999999999999999999999999999999999999999999999999999999 8877776
Q ss_pred CCcccccCCCCchhhHHHHHHHHHHhcCCCCcCcccCCCCCCCCchHHHhcCccccccccccc--ccCcCCCCcccccCC
Q 000210 496 NSTYLSEASSDVDSEWNSFCSIIMQMGQKPSLISKQHLNSAPDSSWEFLLNSDFHKNYCKFNF--IAGISGTKPAVLVPN 573 (1854)
Q Consensus 496 na~~ls~~~~s~~~EW~~Fv~~Ll~lm~~s~~i~pKks~~~~~~dWe~Ll~S~~h~~~~~~~~--l~~~~~~~~l~~~~~ 573 (1854)
.++ +.++.+.||+.|+++++.+||.....--+..+......|.++..+.+|+..+..+. +...........+..
T Consensus 384 ~~~----~l~S~~~EwelF~t~~l~~mg~~~~~v~~~~~~~f~~s~~fl~~sk~~~~ss~~sdd~~~~~~~~~n~~s~~i 459 (1496)
T KOG1858|consen 384 SRP----GLPSIHSEWELFVTCLLNAMGLNTERVDYAGNFDFEGSFSFLIASKVHRPSSTGSDDRLDAFSYLSNDLSKFI 459 (1496)
T ss_pred cCC----CCCcHHHHHHHHHHHHHHHhcCcceeehhcccccccccccceeccccccCccccccccchhhhhhhccccccC
Confidence 665 44588999999999999999864432222222334456777777777665532110 000000000000000
Q ss_pred CCCCccc---cccccccchhhhhHHHHHHHHHHHHHHhcccccchhcHHHHHHHHHHHHHHhChhhHHHHHhhcCCcccc
Q 000210 574 SSRKEVD---GSLILNDSFYSELFMVSLDALHSLYESLKLDTLRKRDLELLAVLLCNVAKFLGEEYYLDHYIRDFPCLSK 650 (1854)
Q Consensus 574 s~~s~~~---~~~~~e~~~l~~~lp~Il~~LHLlyEElKLd~l~~~~l~~L~~lL~qla~~L~~~~w~dyY~~d~p~~~~ 650 (1854)
+..+..+ .+...+.. .+.++..|+++||++|||+|||++++..+..|+++|+|+|++|+|..|++||.+|||.+..
T Consensus 460 ~~d~~~~~~e~~~~~~~~-~~~~~~~i~~~LH~i~Eel~L~~l~~~~~~~L~~~L~~la~~m~~~~y~~~Y~~D~p~l~~ 538 (1496)
T KOG1858|consen 460 PEDSIKLPLEVELHPCYD-MFQSLSMIFITLHLIYEELKLDTLMKPRLPSLAELLLQLAKVMKWPAYVEYYIRDFPELFL 538 (1496)
T ss_pred ChHhhhhhHHhhhCcchh-hhhhHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHhCccHHHHHHHhccHHHHh
Confidence 1110000 01122222 4778888999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCcCCcCCCCCCcHHHHHHHHHccCCCCCCCCCCCcccccCCCchhHHHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 000210 651 KFGMSMDSVSQKNPPSLFKWLENCLEYGYNYANVNDLPPLIRKDESSVVSWARKVVSFYSLLLGAKPIGKKLPSGVFCNI 730 (1854)
Q Consensus 651 ~~~~~~~~~~~~~PPsI~~~L~~~~~~~~~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~l~~~~~~~~~~~s~~~~~i 730 (1854)
.++......+..+||+||+|+++|+++++...+|+.++.+++++ . .+ ......-........+|.+
T Consensus 539 ~~~~~~~l~~~~~Ppsi~~~l~~~l~~~~~~~~~~~l~~v~ers-y---~~----------~~~~~p~~~~~~~~~~~~~ 604 (1496)
T KOG1858|consen 539 TIGLEINLDFEHEPPSIFKWLEGCLRRSSEVPFYDFLEYVCERS-Y---VL----------TILSIPKTVSLESLRRCLI 604 (1496)
T ss_pred cchhhhhccccCCChHHHHHHHHHHhcCCCCCCccccccccccc-c---hh----------hhccccchhhHhhcchhhc
Confidence 65544333344489999999999999887777888887776544 1 11 1111111112234567777
Q ss_pred CCCCCCChHHHHHHHHHhcCCChhhhcccChhhHHHHHHHHHHhhcCCCCCCchhhhhhcCchhhccccccccccccccc
Q 000210 731 APGSFCSNEELTVLAMVGENFGLQQLDLLPCGVSLPLRHALDKCRESPPTDWPAAAYILLGREDLASSCLANTCKSKELE 810 (1854)
Q Consensus 731 ~~~~~~~~~~~~vl~m~~~~~~~~~Le~lP~GV~~PL~eaL~~cr~~pp~~w~~~~y~LIgR~DL~~~~~~~~~~~~~~~ 810 (1854)
.+.+.+...+.++.+|..++|+++++|++|+|+++||+++|+.||+.|+.+|+.++|.||+|+|++....+...+ ...+
T Consensus 605 ~~~~~s~~~~~l~~~m~~~r~~~~~~~r~p~g~~~~i~~al~~~r~~~~~~~~~~a~~Li~r~di~~~~~~~~~~-~~~~ 683 (1496)
T KOG1858|consen 605 NPVSLSMILEQLEELMTRERFTLKDLERYPFGVSLIIRTALRSAREEPSMNWPSDAYRLIKRPDIASTKQPKTGK-VVFE 683 (1496)
T ss_pred ccchhhhhHHHHHHHHHHhhhhhhhhhhcccccccHHHHHHHHHhhCCCCCCCHHHHHHhcchhhhhccCCcccc-eeee
Confidence 777777778899999999999999999999999999999999999999999999999999999998621111000 0000
Q ss_pred ccccccccccCcccccccCCCccCccccccCCCCCCCCCCCCcCCCCcccCchhhcccccccccCCcchHHHHHHhhccC
Q 000210 811 TQTNVNLISMSTPYMLHLHPVTVPSIVSDTSGLDSTKFEDTDSVDGSMTDGMEHIFASGTQLRYGRDLRLNEVRRVLCSA 890 (1854)
Q Consensus 811 ~~~~~~~~s~~~~~~~~~~p~~i~~~~~d~~~~~~~~~~d~~~~d~~~~dg~~~~~~~~~~l~F~~D~R~~Ev~~LL~ss 890 (1854)
.+.+.+ ..++..++ ... .|++.+...+++.|||++|+|++||++||+++
T Consensus 684 ~~~~~~-----------~~~~~~~s-----------~~~---------~~~~~~~~~~i~~l~f~eD~R~~~V~~lL~~~ 732 (1496)
T KOG1858|consen 684 MQVKSS-----------DVPKGTPS-----------TLR---------DDQSIDPLKKITGLIFSEDRRMAEVRSLLNSS 732 (1496)
T ss_pred hhhhcc-----------cccCCCcc-----------ccC---------cccchhhhhHhhhcccCCCccHHHHHHHhccC
Confidence 000000 00111111 011 13344445789999999999999999999999
Q ss_pred CCeeEEccCCCCCCHHHH---HHHHHHHHHHHhhccccchhhhhccccCccCccccccCceeeeeEecCCCCcEEEeCCC
Q 000210 891 RPVAIQTSVSPSATDQDL---QQAQLWHLAQRTTALPLGRGAFTLATINTLLTEAFTVPKLVLAGRLPAQQNATVNLDPN 967 (1854)
Q Consensus 891 ~p~~i~~~~~~~~sd~e~---qq~~l~~l~~RTlalpvGRgm~t~~t~~pl~Te~~~iP~l~L~g~~p~~~n~tV~ld~~ 967 (1854)
+|+.|++.+. ..+|+++ |+++++++|.||||+|||||||||+|.+|.+||.+++|++|+.|+.|+ +++||+.. +
T Consensus 733 ~pi~i~~~~~-~~~D~~~~e~q~~~l~~lc~RTma~pvGrg~l~~~T~~p~~t~~~~~p~l~~~g~~p~-~~~ti~~~-e 809 (1496)
T KOG1858|consen 733 SPIVIETEQL-KTEDLEFKEEQEKFLQQLCLRTMALPVGRGMLTYGTKVPLPTESLTIPKLNLLGRHPG-TLITIENK-E 809 (1496)
T ss_pred CCeEEEEeee-ccchhhhHHHHHHHHHHHHHHHhccchhhhhhcccccCCCcccccccchhhccccCCc-ccceecCc-h
Confidence 9999999988 6677776 777889999999999999999999999999999999999999999986 67777764 4
Q ss_pred ccCcccCCChhhHHHHHhhhcccCCccccCCcceeecccCCCCchhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHH
Q 000210 968 IRNIQELKSWPEFHNAVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTA 1047 (1854)
Q Consensus 968 ~~~~~~~~~W~~FHnGVAaGL~is~~~~~i~~sWI~~Nkp~~~~~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~ts 1047 (1854)
+.+ +++++||+||||||+||+|+|.+++||++||+||||++++++||||||||||||||+.|++||||+||+++|++||
T Consensus 810 ~~~-~~~teWp~FhngVa~GLrIsp~~~~Ids~WI~fnkp~~~~a~haGfl~glGLnGhL~~L~~~~i~qyls~~h~~tS 888 (1496)
T KOG1858|consen 810 IEN-QELTEWPEFHNGVASGLRISPFATEIDSSWIVFNKPKELTAEHAGFLFGLGLNGHLKALNTWHIYQYLSPKHEMTS 888 (1496)
T ss_pred hhc-cccccchhhHHHHHhhcccCcccccccceeEEEecCCCcchheeheeeecccccccccccHHHHHHHccCCCccee
Confidence 544 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCc-cCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCC
Q 000210 1048 VGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSV-ELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDN 1126 (1854)
Q Consensus 1048 iGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~-dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~ 1126 (1854)
|||||||||||+||||.+++|+|++|++|++|+++ |+|||+.+|+||++||||||+||+||+|+|+|+.||+|+++.|+
T Consensus 889 vgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~~~e~ 968 (1496)
T KOG1858|consen 889 VGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPPNPEN 968 (1496)
T ss_pred HHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccCchhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999998899
Q ss_pred cccchhhHHHHHHHHHHHHhcCCCCcCCchhh-HHHHHHHHhCCcccccccccccccccccccccccccccCcccccccc
Q 000210 1127 VLEREGHAVSAGFALGLVALGRGEDALGFTDT-LVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVT 1205 (1854)
Q Consensus 1127 ~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~-l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt 1205 (1854)
+++||+|++||||+||||+||+|+...|+.|. +.++|..||.|+. +|+ ....+.++++.+.|+.||++.|+||+
T Consensus 969 ~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~~~~~~l~~ym~~g~---~r~--~~~~~~~~~~~~~q~~eg~t~~~dv~ 1043 (1496)
T KOG1858|consen 969 VLEREGYKLAAGFSLGLINLGRGSNLPGMSDLKLVSRLLVYMVGGV---RRP--IDVPQNEKYRSSTQILEGSTSNLDVT 1043 (1496)
T ss_pred chhhhhhhhhcCcccceeeeccCCCCcchhcccchHHHHHHhhccc---ccc--ccccccccccchhhhccCceeeeecC
Confidence 99999999999999999999999999999999 8999999996552 232 33445555566899999999999999
Q ss_pred chhHHHHHHHHHhCCCCHHHHhhcCCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccC
Q 000210 1206 APGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRD 1285 (1854)
Q Consensus 1206 ~pgA~lALgLiylkT~n~~ia~~L~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~ 1285 (1854)
+|||+||||||||||||..||++|++|+|.|.+|++|||++++|++|++|||||.|.|+.+||.+|+|+++++....
T Consensus 1044 ~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~--- 1120 (1496)
T KOG1858|consen 1044 APGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADL--- 1120 (1496)
T ss_pred CccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhc-cccccccCCCCCCCccccccchhH
Q 000210 1286 DTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEI-KPVFATRGNAFPKGLSRYVDRCTL 1364 (1854)
Q Consensus 1286 ~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~-~pla~~~~~~~p~~~~~~l~r~t~ 1364 (1854)
.+|+|.|++.|+|+||+||||||||||||||+|..|+++|..++++|++.. .|.. .++ +.+++.|+
T Consensus 1121 ----~~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~-----~~~----~~~~~~tv 1187 (1496)
T KOG1858|consen 1121 ----QEDVDLETLSQAYVNILAGACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLK-----SND----GRVTAVTV 1187 (1496)
T ss_pred ----hhhhhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCc-----cCC----CcccchhH
Confidence 267899999999999999999999999999999999999999999998732 2322 222 34579999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCCChhhHHHHHHHHhc
Q 000210 1365 EICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYP 1444 (1854)
Q Consensus 1365 ~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~TlstS~~AIA~LlialyP 1444 (1854)
++|++++++|+|||||||||++|+|++|+||++...+++++||.|||+|||+|+||||||||||++||.+||+|+|+|||
T Consensus 1188 ~~cl~v~i~sls~vmagSgdleVlr~~r~Lr~~~~~~~~~~yg~~ma~h~alGil~lG~Gr~t~s~s~~sIa~ll~slfp 1267 (1496)
T KOG1858|consen 1188 ERCLSVLIISLSMVMAGSGDLEVLRRLRFLRSRTSPYGHMNYGAQMATHMALGILFLGGGRYTISTSNLSIAALLISLFP 1267 (1496)
T ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCCcccchhHHHHHHhhceeEecCcccccCCCcHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999778999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchhhHHHHHHHHhhccCceEEEEeeCCCCCeeEeeEEEEEecCcccccceeEEecccccCCCCcceEEEEeC
Q 000210 1445 RLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVYAPFEVTVRETEHYSETSYCEVTPCILPERAILKRVCVCG 1524 (1854)
Q Consensus 1445 ~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dvdt~~pv~vpV~v~~~~~~~~~~t~~~~~tPcLLP~~~~i~~i~v~~ 1524 (1854)
.||.+++|||||+||+||||+||+|||+|+++|+||+.||++|++|++|.+...+++ ..+|||||+.+.+++|.+++
T Consensus 1268 ~fP~~~~Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~~~~~---~iap~lLP~~~~l~~v~v~g 1344 (1496)
T KOG1858|consen 1268 HFPISPSDNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTLYSLT---EIAPILLPEYSTLSSVSVLG 1344 (1496)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccchhhhh---hcCCeeccccccchhhhhcC
Confidence 999999999999999999999999999999999999999999999999988876644 68999999999999999999
Q ss_pred CCeeeEEEeccCCCCCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCCcchhhHHHHHHhhhccCCCCCCCCCCCCCCccc
Q 000210 1525 PRYWPQVIELVPEDKPWWSYGDKNDPFNSGVLYIKRKIGACSYVDDPVGCQSLLSRAMHKVFSLTSDPSTNDKSGLGSVA 1604 (1854)
Q Consensus 1525 ~~Y~p~~id~~~~~~~~~~~~~~~~~~~~~~l~VKrr~g~lsy~~dp~g~~sll~~~~~~~~~~~~~~~~~~~~~~~~~~ 1604 (1854)
++|||+.|+.+.+. . + .-++++++++.|++.++|.+||.+++++++++..
T Consensus 1345 ~~yw~~~iel~~~~---~----~--~~ks~~l~i~~~~~~~~~~eD~~~~~~l~a~t~~--------------------- 1394 (1496)
T KOG1858|consen 1345 PNYWPVKIELSFNS---Q----H--LEKSNTLDINPRDGTLSREEDSDLFKSLLATTLP--------------------- 1394 (1496)
T ss_pred CccceEEEecccch---h----h--ccccccccccccccceeecCChhHhHHHHhhcCC---------------------
Confidence 99999999974332 1 1 1168999999999999999999999999988762
Q ss_pred hhhHhhhcCCChhHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhhcccccccccccCC
Q 000210 1605 VDQLVSTFSSDPSLIAFAQLCCDPSWNSRSDGDFQEFCLQVLFECISKDRPALLQVYLSLHTMIGSMVDQVINGHVVVGD 1684 (1854)
Q Consensus 1605 ~~~~~~~fs~d~~~~~f~~~~c~~~~~~~~~~~~~~~~~~~l~ec~~~d~~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~ 1684 (1854)
+ . ..|++||.+++|+++||++.++...+.+... +++|+++|.++.+|+ .| +.
T Consensus 1395 ~-~--~~F~s~~s~~~~~~~~~~~~~n~~~~~~~ld-----~~~~~t~~~~e~~~~---------~~-----------~~ 1446 (1496)
T KOG1858|consen 1395 P-T--SLFSSEPSLLNFASLCCDNNVNSLGDKLLLD-----FFDNVTRDRIESLSV---------LL-----------QN 1446 (1496)
T ss_pred c-c--hhccCCcHHHHHHHhhcccccccccchhhhh-----hhhhhHHHHHHhhhh---------hh-----------cc
Confidence 1 1 1899999999999999999998887754433 899999999999998 11 24
Q ss_pred ccccchhHHHHHHHH
Q 000210 1685 SLNISNLKLALAYID 1699 (1854)
Q Consensus 1685 s~~lw~lkl~~~y~~ 1699 (1854)
+...||.|++.+|..
T Consensus 1447 ~~~~~~~~~l~~~~k 1461 (1496)
T KOG1858|consen 1447 FESFWQGKLLAKLLK 1461 (1496)
T ss_pred ccchhhHHHHHHHHH
Confidence 457899999998865
No 2
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-55 Score=520.06 Aligned_cols=458 Identities=20% Similarity=0.278 Sum_probs=380.9
Q ss_pred CCChhhHHHH-HhhhcccCCcc---ccCCcceeecccCCC------------------------------CchhhHHHHH
Q 000210 974 LKSWPEFHNA-VAAGLRLSPIQ---GKMSRTWIMYNKPEE------------------------------PNITHAGLLL 1019 (1854)
Q Consensus 974 ~~~W~~FHnG-VAaGL~is~~~---~~i~~sWI~~Nkp~~------------------------------~~~~hAGfLl 1019 (1854)
+..=..|.|| |.+|..-.+.- .+-.+.|++.||-.+ -+++.||.||
T Consensus 358 qnla~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qldkylys~~~~ikaGaLL 437 (878)
T KOG2005|consen 358 QNLAATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLDKYLYSDESYIKAGALL 437 (878)
T ss_pred HHHHHHHHHHHhhcccCCCceeccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHHHHhhcCCchhhhccce
Confidence 3455789999 99999888732 235679999998531 2589999999
Q ss_pred Hhhcc--CccCcCCHh--hHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHH
Q 000210 1020 ALGLH--GHLRALTIS--DIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAAL 1095 (1854)
Q Consensus 1020 gLGLn--GhL~~L~~~--~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAl 1095 (1854)
|+|+. |.....++. .+.+|+.......+||.+||++++|.||..+++.++| .|.-.|-+.|+.|-+.|.
T Consensus 438 gigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL-------~Pi~~d~~~~~ev~~~as 510 (878)
T KOG2005|consen 438 GIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELL-------SPIMFDTKSPMEVVAFAS 510 (878)
T ss_pred eeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHH-------hHHhcCCCCchhHHHHHH
Confidence 99995 777778776 6789999999999999999999999999999999877 555557777888999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccc
Q 000210 1096 MSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNE 1175 (1854)
Q Consensus 1096 lglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~ 1175 (1854)
+++|++|+||||.+++..||+.++++...+ ..+.|.+...+|||++++|||+.. |.+++.+.. ++
T Consensus 511 lsLG~IfvGscn~dvts~ilqtlmekse~E---l~d~~~RFL~LGL~llflgkqe~~----d~~~e~~~~-i~------- 575 (878)
T KOG2005|consen 511 LSLGMIFVGSCNEDVTSSILQTLMEKSETE---LEDQWFRFLALGLALLFLGKQESV----DAVVETIKA-IE------- 575 (878)
T ss_pred hhcceeEEecCChHHHHHHHHHHHHhhhhh---hhchHHHHHHHHHHHHHhcccchH----HHHHHHHHH-hh-------
Confidence 999999999999999999999998875332 256789999999999999999876 667777766 21
Q ss_pred cccccccccccccccccccccCccccccccchhHHHHHHHHHhCCCCHHHHhhcCCCCccccccccCchhHHHHHHHHHH
Q 000210 1176 RSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIARNL 1255 (1854)
Q Consensus 1176 ~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA~lALgLiylkT~n~~ia~~L~iP~t~~~ld~vRPd~lllR~lA~~L 1255 (1854)
-.+++...++..+|+|.||||....+... +.++.
T Consensus 576 --------------------------~~~~~~~~~lv~~caYaGTGnvl~Iq~q~-------ll~~c------------- 609 (878)
T KOG2005|consen 576 --------------------------GPIRKHESILVKSCAYAGTGNVLKIQSQL-------LLSFC------------- 609 (878)
T ss_pred --------------------------hHHHHHHHHHHHHhhccccCceEEechhh-------hhhhc-------------
Confidence 22344578899999999999986554421 11100
Q ss_pred HhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHH
Q 000210 1256 IMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVY 1335 (1854)
Q Consensus 1256 ImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~ 1335 (1854)
+ + ++.+ .+..|-+ .+++.|.+|||...+..|..|.++++++|++.
T Consensus 610 ----------------------------g-E----~~~~-~e~~~~~-avLgiAliAMgeeig~eM~lR~f~h~l~yge~ 654 (878)
T KOG2005|consen 610 ----------------------------G-E----HDAD-LESEQEL-AVLGIALIAMGEEIGSEMVLRHFGHLLHYGEP 654 (878)
T ss_pred ----------------------------C-C----Cccc-hhhhccc-hhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCH
Confidence 0 0 0001 1122234 49999999999999999999999999999999
Q ss_pred hhhhcccccccc-CCCCCC-Cccccccchh----HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcccCCCCcccHHHH
Q 000210 1336 FLNEIKPVFATR-GNAFPK-GLSRYVDRCT----LEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQ 1409 (1854)
Q Consensus 1336 fl~~~~pla~~~-~~~~p~-~~~~~l~r~t----~~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~~~d~~~~yG~~ 1409 (1854)
.+|+++|+|..- ...+|+ ++.++++|.+ .++.+| +++|||+|+|||+|+|+.++||+|.++|.+|. ..+
T Consensus 655 ~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~n-aIfamGLiGAGTnNARla~mLrqlaSYyyKd~----~~L 729 (878)
T KOG2005|consen 655 HIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMN-AIFAMGLIGAGTNNARLAQMLRQLASYYYKDS----KAL 729 (878)
T ss_pred HHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHH-HHHHhccccCCcchHHHHHHHHHHHHHHhccc----hhH
Confidence 999999998873 224788 7888888866 555666 89999999999999999999999999999985 499
Q ss_pred HHHHHHHHHhhcCCCceeeCC--------ChhhHHHHHHHHhccC-CCCCCCchhhHHHHHHHHhhccCceEEEEeeCCC
Q 000210 1410 MAVSLAIGFLFLGGGMRTFST--------NNNSIAALFISLYPRL-PSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDT 1480 (1854)
Q Consensus 1410 mAv~mAlGlLfLGgG~~Tlst--------S~~AIA~LlialyP~f-P~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dvdt 1480 (1854)
|.+++||||++||+|++|+++ ++.|+|+|+..+|.++ ++.+..+++|+ +.||.++|++||+++|+|++
T Consensus 730 f~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~i~l~~~~H~--~ly~Lv~amqprm~~T~~e~- 806 (878)
T KOG2005|consen 730 FVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDANIILLVKSHY--LLYFLVLAMQPRMLVTVDEE- 806 (878)
T ss_pred HHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccchhccchHHH--HHHHHHHhhCceEEEeeccc-
Confidence 999999999999999999998 3699999999999998 54444458998 89999999999999999999
Q ss_pred CCeeEeeEEEEEe------cCcccccc-eeEEecccccCCCCcceEEEEeCCCeeeEEEeccCCCCCCCCCCCCCCCCCc
Q 000210 1481 GLPVYAPFEVTVR------ETEHYSET-SYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWSYGDKNDPFNS 1553 (1854)
Q Consensus 1481 ~~pv~vpV~v~~~------~~~~~~~t-~~~~~tPcLLP~~~~i~~i~v~~~~Y~p~~id~~~~~~~~~~~~~~~~~~~~ 1553 (1854)
++|+.|||||+++ +|+||++| +|||+||+||.+. +|+|+++++|.|++-- .+
T Consensus 807 ~~pl~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahg---eRAElatd~y~p~t~~------------------lE 865 (878)
T KOG2005|consen 807 LEPLPVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHG---ERAELATDEYLPLTSH------------------LE 865 (878)
T ss_pred CccccceeeccchhhhhhccCCCceecceeccCcceecccc---hhhhhccccccccccc------------------cc
Confidence 6899999999986 79999998 7999999999999 6999999999998654 37
Q ss_pred cEEEEEeCCC
Q 000210 1554 GVLYIKRKIG 1563 (1854)
Q Consensus 1554 ~~l~VKrr~g 1563 (1854)
|++++||+|+
T Consensus 866 g~vILkkNp~ 875 (878)
T KOG2005|consen 866 GVVILKKNPD 875 (878)
T ss_pred eEEEEecCCc
Confidence 9999999996
No 3
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-46 Score=434.74 Aligned_cols=423 Identities=17% Similarity=0.245 Sum_probs=353.7
Q ss_pred chhhHHHHHHhhccC--ccCcCCHh--hHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCc
Q 000210 1011 NITHAGLLLALGLHG--HLRALTIS--DIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEV 1086 (1854)
Q Consensus 1011 ~~~hAGfLlgLGLnG--hL~~L~~~--~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~v 1086 (1854)
+++.||+|||+|+.| ....-++. .+.+||.......+++++||+++++.||..+++.++| .|.-++-+.
T Consensus 427 ~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL-------~Pi~~std~ 499 (881)
T COG5110 427 SYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELL-------QPIMFSTDS 499 (881)
T ss_pred ccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHh-------hhhhcCCCC
Confidence 479999999999975 44444444 6789999999999999999999999999999999999 666566778
Q ss_pred chHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHH
Q 000210 1087 PTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHY 1166 (1854)
Q Consensus 1087 s~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~ 1166 (1854)
|..+-+.|.+++|.+|+||||.+++..+|+.+.++...+ ....+.+..++|||.++.|+++.+ |...+.+..
T Consensus 500 pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e---~~tqw~RFlaLgLa~Lf~g~~d~~----d~v~eti~a- 571 (881)
T COG5110 500 PIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIE---SETQWFRFLALGLASLFYGRKDQV----DDVEETIMA- 571 (881)
T ss_pred cHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHccccchh----HHHHHHHHH-
Confidence 888999999999999999999999999999887654222 245688899999999999999876 667777766
Q ss_pred hCCcccccccccccccccccccccccccccCccccccccchhHHHHHHHHHhCCCCHHHHhhc-CCCCccccccccCchh
Q 000210 1167 IGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDF 1245 (1854)
Q Consensus 1167 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA~lALgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~ 1245 (1854)
++|. ++....++.=+|.|.||||..+.+.| ++-+.. .-|.
T Consensus 572 Ieg~---------------------------------ls~~~eiLv~~c~Y~GTGdvl~Iq~lLhv~~e~-~~D~----- 612 (881)
T COG5110 572 IEGA---------------------------------LSKHEEILVKGCQYVGTGDVLVIQSLLHVKDEF-TGDT----- 612 (881)
T ss_pred hcch---------------------------------hhhhHHHHHhhceecccCcHHHHHHHHhccCCC-Cccc-----
Confidence 3322 23346788899999999999988877 541111 0000
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHH
Q 000210 1246 IMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANV 1325 (1854)
Q Consensus 1246 lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A 1325 (1854)
-.+.|+..|.|+ +++-|.+|||...+..|..|.
T Consensus 613 ----------------------------------------------~k~~ea~ie~~a-~Lg~AliamGedig~eMvlRh 645 (881)
T COG5110 613 ----------------------------------------------LKNEEALIESLA-LLGCALIAMGEDIGSEMVLRH 645 (881)
T ss_pred ----------------------------------------------chhhHHHHHHHH-HhhhHHhhhcchhhHHHHHHH
Confidence 113467788886 999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccC-CCCCC-Cccccccchh----HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcccC
Q 000210 1326 QELLYGYAVYFLNEIKPVFATRG-NAFPK-GLSRYVDRCT----LEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNS 1399 (1854)
Q Consensus 1326 ~~~Ll~y~~~fl~~~~pla~~~~-~~~p~-~~~~~l~r~t----~~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~~ 1399 (1854)
+++++||+..-+|++.|+|..-. ..+|+ ++.+++.|.+ +++.+| .++|||+|+|||.|.|+.++||+|.++|.
T Consensus 646 f~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~n-tIfamGLiGAGT~NaRlaqlLrQlaSYY~ 724 (881)
T COG5110 646 FSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIIN-TIFAMGLIGAGTLNARLAQLLRQLASYYY 724 (881)
T ss_pred hhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHH-HHHHhhccccCcchHHHHHHHHHHHHHHh
Confidence 99999999999999999988732 23677 7778888866 444455 79999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhhcCCCceeeCCC--------hhhHHHHHHHHhccC-CCCCCCchhhHHHHHHHHhhccCc
Q 000210 1400 ADGHASYGIQMAVSLAIGFLFLGGGMRTFSTN--------NNSIAALFISLYPRL-PSGPNDNRCHLQAFRHLYVLATEA 1470 (1854)
Q Consensus 1400 ~d~~~~yG~~mAv~mAlGlLfLGgG~~TlstS--------~~AIA~LlialyP~f-P~~~~Dn~~HLQalRHl~vLAveP 1470 (1854)
++. ..+|.+++|||+|+||+|++|+++. +.+.|+|+...+-.. |..+..-.+|+ +.||..+++.|
T Consensus 725 kes----~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~agl~ttv~~lld~~~f~L~ssH~--l~y~l~~~irp 798 (881)
T COG5110 725 KES----KALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHA--LMYFLLCQIRP 798 (881)
T ss_pred hcc----chhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHHHHHHHHHHHccccchhhhhHH--HHHHHHhccCc
Confidence 874 3899999999999999999999984 589999999888776 54555556776 88999999999
Q ss_pred eEEEEeeCCCCCeeEeeEEEEEe------cCcccccc-eeEEecccccCCCCcceEEEEeCCCeeeEEEeccCCCCCCCC
Q 000210 1471 RWIQTVDVDTGLPVYAPFEVTVR------ETEHYSET-SYCEVTPCILPERAILKRVCVCGPRYWPQVIELVPEDKPWWS 1543 (1854)
Q Consensus 1471 R~Lv~~Dvdt~~pv~vpV~v~~~------~~~~~~~t-~~~~~tPcLLP~~~~i~~i~v~~~~Y~p~~id~~~~~~~~~~ 1543 (1854)
|++++..++ |+|+.|+|||+++ +|+|+++| ++||+||+||.+. +|+|+++++|-+.+..
T Consensus 799 ~~~vtl~e~-ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPVlL~h~---eRAEl~td~y~~~tS~---------- 864 (881)
T COG5110 799 QKYVTLSEK-GEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVLLSHK---ERAELDTDEYNVCTSY---------- 864 (881)
T ss_pred ceEEEecCC-CceeeeEEeecchhhhhhccCCCceeeeeeecCcceeeccc---hhhhcccccccchhhh----------
Confidence 999999999 8999999999986 78898888 7999999999999 6999999999998654
Q ss_pred CCCCCCCCCccEEEEEeCCC
Q 000210 1544 YGDKNDPFNSGVLYIKRKIG 1563 (1854)
Q Consensus 1544 ~~~~~~~~~~~~l~VKrr~g 1563 (1854)
-+|++++||+++
T Consensus 865 --------iEgvvILKKN~d 876 (881)
T COG5110 865 --------IEGVVILKKNPD 876 (881)
T ss_pred --------hceeEEEecCcc
Confidence 279999999996
No 4
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-35 Score=354.10 Aligned_cols=388 Identities=23% Similarity=0.292 Sum_probs=303.4
Q ss_pred ccCCChhhHHHHHhhhcccCC----ccccCCcceeecccCCCCchhhHHHHHHhhcc--CccCcCCHhhHHhhccCCChH
Q 000210 972 QELKSWPEFHNAVAAGLRLSP----IQGKMSRTWIMYNKPEEPNITHAGLLLALGLH--GHLRALTISDIYKYFYQEHES 1045 (1854)
Q Consensus 972 ~~~~~W~~FHnGVAaGL~is~----~~~~i~~sWI~~Nkp~~~~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~~~he~ 1045 (1854)
...++|+.|....+.|+ |++ ++.++...++....+.+..+..+|+||||||. ||.+.......+..=+..+|.
T Consensus 351 skAtNWaKFtAtAsLGv-IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~ 429 (929)
T KOG2062|consen 351 SKATNWAKFTATASLGV-IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEV 429 (929)
T ss_pred hhcchHhhhhhhhhcce-eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchh
Confidence 45689999999999999 665 23577888886554557789999999999995 898852222222222345789
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCc-cCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCC
Q 000210 1046 TAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSV-ELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGG 1124 (1854)
Q Consensus 1046 tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~-dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~ 1124 (1854)
+.+|++||+|.+.+||.|.++.+-|...+ + |-.+ .--||.+|+||+..||.+....|-|++--.+
T Consensus 430 v~hG~cLGlGLa~mGSa~~eiYe~lKevL-------y~D~Av---sGEAAgi~MGl~mlGt~~~eaiedm~~Ya~E---- 495 (929)
T KOG2062|consen 430 VRHGACLGLGLAGMGSANEEIYEKLKEVL-------YNDSAV---SGEAAGIAMGLLMLGTANQEAIEDMLTYAQE---- 495 (929)
T ss_pred hhhhhhhhccchhcccccHHHHHHHHHHH-------hccchh---hhhHHHHhhhhHhhCcCcHHHHHHHHHHhhh----
Confidence 99999999999999999999999987664 2 4333 4445669999999999999999998864222
Q ss_pred CCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccccccc
Q 000210 1125 DNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDV 1204 (1854)
Q Consensus 1125 d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dv 1204 (1854)
+++|...++.|+++.||++|+++++ |.+++.|.. . . ++ .+
T Consensus 496 ---TQHeki~RGl~vGiaL~~ygrqe~A----d~lI~el~~----d---k-dp---------------il---------- 535 (929)
T KOG2062|consen 496 ---TQHEKIIRGLAVGIALVVYGRQEDA----DPLIKELLR----D---K-DP---------------IL---------- 535 (929)
T ss_pred ---hhHHHHHHHHHHhHHHHHhhhhhhh----HHHHHHHhc----C---C-ch---------------hh----------
Confidence 5688999999999999999999987 567766654 1 1 11 12
Q ss_pred cchhHHHHHHHHHhCCCCHHHHhhc-CCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhc
Q 000210 1205 TAPGAIIALSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEAL 1283 (1854)
Q Consensus 1205 t~pgA~lALgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~ 1283 (1854)
..|.+++++|+|.||||..+.++| ++..++ .-|+|| ...++|.++|++++- +++|.++....+
T Consensus 536 -R~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVr----RaAVialGFVl~~dp--------~~~~s~V~lLse-- 599 (929)
T KOG2062|consen 536 -RYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVR----RAAVIALGFVLFRDP--------EQLPSTVSLLSE-- 599 (929)
T ss_pred -hhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHH----HHHHHHheeeEecCh--------hhchHHHHHHhh--
Confidence 248899999999999997766665 775554 334444 799999999999994 789988865542
Q ss_pred cCCCCCcccCChHHHHHHHH-HHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccccch
Q 000210 1284 RDDTSDVDEMDAETFVQAYV-NIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRC 1362 (1854)
Q Consensus 1284 ~~~~~~~~~~d~e~~~qay~-~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~l~r~ 1362 (1854)
.|. ||++|++||+|+.+|||++.+|.++|-.....- .++++++
T Consensus 600 -----------------s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~-------------------~~fVRQg 643 (929)
T KOG2062|consen 600 -----------------SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP-------------------VDFVRQG 643 (929)
T ss_pred -----------------hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh-------------------HHHHHHH
Confidence 333 799999999999999999999999886432111 2457777
Q ss_pred hHHHHHHHHHHHHHHHHhcCCchHH--HHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCC-------Chh
Q 000210 1363 TLEICLHLVVLSLSVVMAGSGHLQT--FRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFST-------NNN 1433 (1854)
Q Consensus 1363 t~~~cl~v~~lALslVmAGTGdl~v--lr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~Tlst-------S~~ 1433 (1854)
+++|+||||..-.+.-+ ...+|....+...|.|..-...|++.+|||++..||.+.|++- +-.
T Consensus 644 --------AlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~ 715 (929)
T KOG2062|consen 644 --------ALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLD 715 (929)
T ss_pred --------HHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchH
Confidence 69999999999998765 4566666667777777778899999999999999999999983 357
Q ss_pred hHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhccCceEEEEeeCCCCCee
Q 000210 1434 SIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPV 1484 (1854)
Q Consensus 1434 AIA~LlialyP~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dvdt~~pv 1484 (1854)
||+||++++. -|||.+|-||.+||..|.|+|..|.|.+.|.
T Consensus 716 ~vvGl~~Flq----------~WyWfPL~~flSLaf~PT~vigln~dLk~Pk 756 (929)
T KOG2062|consen 716 AVVGLVVFLQ----------YWYWFPLIHFLSLAFTPTTVIGLNEDLKIPK 756 (929)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHhcCcceEEEeccccCCcc
Confidence 9999999763 3455559999999999999999999998774
No 5
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-27 Score=282.31 Aligned_cols=384 Identities=21% Similarity=0.284 Sum_probs=286.5
Q ss_pred cCCChhhHHHHHhhhcccCC----ccccCCcceeecccCCCC---chhhHHHHHHhhcc--CccCcCCHhhHHhhccCCC
Q 000210 973 ELKSWPEFHNAVAAGLRLSP----IQGKMSRTWIMYNKPEEP---NITHAGLLLALGLH--GHLRALTISDIYKYFYQEH 1043 (1854)
Q Consensus 973 ~~~~W~~FHnGVAaGL~is~----~~~~i~~sWI~~Nkp~~~---~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~~~h 1043 (1854)
...+|+.|....+.|. |+. ...+|...++ |.+- .+..+|.||||||. ||-+.-.+...-+++..++
T Consensus 347 ka~nWaKFtatAslGv-IH~gn~n~~~~il~pYL----P~e~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~teD 421 (926)
T COG5116 347 KASNWAKFTATASLGV-IHLGNSNPGYEILKPYL----PSEVASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTED 421 (926)
T ss_pred hcchHhhhhhhhhcee-EeeccCCchhHhhhccC----CcccchhhhccCceeeeehhhccCcCcccHHHHHHHhCcccc
Confidence 4579999999999998 554 2345665555 5543 38899999999995 8887655555544455666
Q ss_pred h---HHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHcc
Q 000210 1044 E---STAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGR 1120 (1854)
Q Consensus 1044 e---~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~ 1120 (1854)
| ....|++||+|...+|+.|.++.+-|...+ -|-+...-.||.+|+||+..||.....++-|+.--++
T Consensus 422 e~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l---------~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~E 492 (926)
T COG5116 422 ELTPELAYGVCLGIGLINMGSANREIYEKLKELL---------KNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGE 492 (926)
T ss_pred cccHHHHHHHHhhhcchhcccccHHHHHHHHHHH---------hcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcc
Confidence 6 778999999999999999999998886553 2334456677889999999999999999988764222
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccc
Q 000210 1121 RSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMV 1200 (1854)
Q Consensus 1121 ~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~i 1200 (1854)
+++|...++.|+++.||++|+++.+ |.++..|.. ... ..+|
T Consensus 493 -------Tqhe~i~Rglgig~aLi~ygrqe~a----dd~I~ell~--------d~d---------------s~lR----- 533 (926)
T COG5116 493 -------TQHERIKRGLGIGFALILYGRQEMA----DDYINELLY--------DKD---------------SILR----- 533 (926)
T ss_pred -------hhhhhHHhhhhhhhhHhhhhhHHHH----HHHHHHHhc--------Cch---------------HHhh-----
Confidence 4588899999999999999999865 445555444 111 1122
Q ss_pred cccccchhHHHHHHHHHhCCCCHHHHhhc-CCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhh
Q 000210 1201 NVDVTAPGAIIALSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSN 1279 (1854)
Q Consensus 1201 n~dvt~pgA~lALgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~ 1279 (1854)
++.++++|++|.||||..+.+.+ ++..++ .-|+|| ...++|.++|..++. .-+|..+...
T Consensus 534 ------y~G~fs~alAy~GTgn~~vv~~lLh~avsD-~nDDVr----RAAViAlGfvc~~D~--------~~lv~tvelL 594 (926)
T COG5116 534 ------YNGVFSLALAYVGTGNLGVVSTLLHYAVSD-GNDDVR----RAAVIALGFVCCDDR--------DLLVGTVELL 594 (926)
T ss_pred ------hccHHHHHHHHhcCCcchhHhhhheeeccc-CchHHH----HHHHHheeeeEecCc--------chhhHHHHHh
Confidence 37889999999999998876665 664443 344455 799999999999995 3356555443
Q ss_pred hhhccCCCCCcccCChHHHHHHHH-HHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCcccc
Q 000210 1280 VEALRDDTSDVDEMDAETFVQAYV-NIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRY 1358 (1854)
Q Consensus 1280 ~~~~~~~~~~~~~~d~e~~~qay~-~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~ 1358 (1854)
.+ .|. +|++|.++|+|+.+|||++..|.|+|-.....- .++
T Consensus 595 s~-------------------shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~-------------------~df 636 (926)
T COG5116 595 SE-------------------SHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDT-------------------NDF 636 (926)
T ss_pred hh-------------------ccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCc-------------------HHH
Confidence 32 222 799999999999999999999999886432111 134
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCC-----
Q 000210 1359 VDRCTLEICLHLVVLSLSVVMAGSGHL---QTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFST----- 1430 (1854)
Q Consensus 1359 l~r~t~~~cl~v~~lALslVmAGTGdl---~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~Tlst----- 1430 (1854)
++++ +.+|+||+...-++- .|-|+.+.+ .++..+.|..--..+++.+|||+.-.||++.|++-
T Consensus 637 VRQ~--------AmIa~~mIl~Q~n~~Lnp~v~~I~k~f-~~vI~~Khe~glaklGA~laqGi~~aGGRNvti~l~natG 707 (926)
T COG5116 637 VRQS--------AMIAVGMILMQCNPELNPNVKRIIKKF-NRVIVDKHESGLAKLGAVLAQGISEAGGRNVTISLRNATG 707 (926)
T ss_pred HHHH--------HHHHHHHHHhhcCcccChhHHHHHHHH-HHHHhhhhHhHHHHHHHHHHhhhhhcCCceEEEEEecccC
Confidence 5565 689999998887753 344444443 34444555555688999999999999999999983
Q ss_pred --ChhhHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhccCceEEEEeeCCCCCeeE
Q 000210 1431 --NNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDVDTGLPVY 1485 (1854)
Q Consensus 1431 --S~~AIA~LlialyP~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dvdt~~pv~ 1485 (1854)
+-.+|+||++++. .|||.+|-||.+|+.-|.-+|.+|-....|..
T Consensus 708 ~l~~~~ivGlv~Flq----------yWYWfPL~hf~SLsf~Pttvigi~~s~~~pkF 754 (926)
T COG5116 708 ILSADRIVGLVLFLQ----------YWYWFPLIHFVSLSFLPTTVIGIRGSQAIPKF 754 (926)
T ss_pred cccHHHHHHHHHHHH----------HHHHHHHHHHHhhhcCcceeecccccccCcee
Confidence 4589999999763 44555599999999999999999988666654
No 6
>PF12859 Apc1: Anaphase-promoting complex subunit 1
Probab=99.61 E-value=1.3e-15 Score=154.47 Aligned_cols=104 Identities=28% Similarity=0.399 Sum_probs=67.6
Q ss_pred ceEEEEecceEEEEecCCceEeeecccceeecccCCcceeEeeccCC-CCCCCCCCCCcccccCccCCCCCcccCCCCCC
Q 000210 110 ALLCVLQIESLTIYNTSGEVISIPLPRTITSIWPLPFGLLLQSIEGN-FPAHAPFPSSSRLLGARDIPRPRREIGHSPQN 188 (1854)
Q Consensus 110 ~~lCv~~~~~l~v~~~~Ge~~~~~lpf~Vs~vW~~~~GlLler~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~g~~~~~ 188 (1854)
+|+||++.++++||+.+||+|+++|||+|++||++++||||||+... .+..... .++-..++.....+.. ..
T Consensus 1 ~~LcV~l~~~~~vy~~~G~~~~v~LPF~V~~~~~~~~GlLLqR~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~ 73 (105)
T PF12859_consen 1 RALCVVLKDQAHVYFPSGESYTVPLPFEVSSAWPLPRGLLLQRKPESSEPSPSSP---QPLSKPRDNSLSPSPS----LD 73 (105)
T ss_pred CEEEEEECCEEEEEeCCCCEEEEEeceEeeEEeccCCEEEEEEccCCCccccccc---cccccccccccccccc----cc
Confidence 48999999999999999999999999999999999999999994431 1111111 0111111111111110 00
Q ss_pred CCCCCCcccccccCccccccccccccCcccCCceeEEee
Q 000210 189 NYSLPSSFNHNIKGETVSMSSHLILSDLLEEPQCTYIEE 227 (1854)
Q Consensus 189 ~~~~~~t~~~~~~~~~~~~~s~f~L~hpldE~~p~~~~~ 227 (1854)
+++ ..+.+...+++.|+|.|||||++||++++
T Consensus 74 ~~~-------~~~~~~~~~p~lfsL~~PL~E~~pV~~~~ 105 (105)
T PF12859_consen 74 SSN-------PSPTSSPPLPRLFSLSDPLDEFGPVVTKQ 105 (105)
T ss_pred ccc-------ccCCCCCCCceEEEecCCcccccceEEcC
Confidence 111 11222244556689999999999999874
No 7
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.7e-14 Score=172.63 Aligned_cols=254 Identities=21% Similarity=0.309 Sum_probs=179.2
Q ss_pred HHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchh
Q 000210 1053 GLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREG 1132 (1854)
Q Consensus 1053 GlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~ 1132 (1854)
+||.-++|--.+.. ++|.-++|.=-++ -+.....+|++++||+|+|.+.. +++.|+++|.... .|.
T Consensus 364 sLGvIH~G~~~~~~-~ll~pYLP~~~~~-----~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~~~-------~e~ 429 (929)
T KOG2062|consen 364 SLGVIHRGHENQAM-KLLAPYLPKEAGE-----GSGYKEGGALYALGLIHANHGRG-ITDYLLQQLKTAE-------NEV 429 (929)
T ss_pred hcceeeccccchHH-HHhhhhCCccCCC-----CCCccccchhhhhhccccCcCcc-HHHHHHHHHHhcc-------chh
Confidence 34445666655554 5776665432222 24457789999999999999866 9999999986533 456
Q ss_pred hHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccccccccchhHHHH
Q 000210 1133 HAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIA 1212 (1854)
Q Consensus 1133 Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA~lA 1212 (1854)
.+..++|+|||..||.-+. .+.|+|+...- .+-.|+..+|.+|
T Consensus 430 v~hG~cLGlGLa~mGSa~~------eiYe~lKevLy-------------------------------~D~AvsGEAAgi~ 472 (929)
T KOG2062|consen 430 VRHGACLGLGLAGMGSANE------EIYEKLKEVLY-------------------------------NDSAVSGEAAGIA 472 (929)
T ss_pred hhhhhhhhccchhcccccH------HHHHHHHHHHh-------------------------------ccchhhhhHHHHh
Confidence 6778999999999998764 27788877441 1234677799999
Q ss_pred HHHHHhCCCCHHHHhhc-CCCCccccccccCchhHHHHHHHH--HHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCC
Q 000210 1213 LSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDFIMLRVIAR--NLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSD 1289 (1854)
Q Consensus 1213 LgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~lllR~lA~--~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~ 1289 (1854)
+||+.+||.|+.+.+.| .. ..+.+.|+ +.|-+|. .|+++..-+..+..|.+.+-
T Consensus 473 MGl~mlGt~~~eaiedm~~Y-a~ETQHek------i~RGl~vGiaL~~ygrqe~Ad~lI~el~~---------------- 529 (929)
T KOG2062|consen 473 MGLLMLGTANQEAIEDMLTY-AQETQHEK------IIRGLAVGIALVVYGRQEDADPLIKELLR---------------- 529 (929)
T ss_pred hhhHhhCcCcHHHHHHHHHH-hhhhhHHH------HHHHHHHhHHHHHhhhhhhhHHHHHHHhc----------------
Confidence 99999999999888866 33 22335666 5677775 78998887665555544321
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhh-hcccccccc-C-------CCCC-------C
Q 000210 1290 VDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLN-EIKPVFATR-G-------NAFP-------K 1353 (1854)
Q Consensus 1290 ~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~-~~~pla~~~-~-------~~~p-------~ 1353 (1854)
+.|. + +++|+++++|+.|.||+|.+|...|+||+....+ .+++.|... + ...| +
T Consensus 530 --dkdp--i------lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 530 --DKDP--I------LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred --CCch--h------hhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 2231 1 8999999999999999999999999999766653 344332221 0 0111 1
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhccc
Q 000210 1354 GLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRN 1398 (1854)
Q Consensus 1354 ~~~~~l~r~t~~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~ 1398 (1854)
+++.+++.+ +++|||+.+||||+-+.+.+|..|-++.
T Consensus 600 s~N~HVRyG--------aA~ALGIaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 600 SYNPHVRYG--------AAMALGIACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred hcChhhhhh--------HHHHHhhhhcCCCcHHHHHHHhhhhcCh
Confidence 222334444 6999999999999999999999998743
No 8
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.3e-11 Score=146.66 Aligned_cols=276 Identities=20% Similarity=0.282 Sum_probs=170.7
Q ss_pred hhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHH
Q 000210 1057 SYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVS 1136 (1854)
Q Consensus 1057 S~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~la 1136 (1854)
-++|--++.. ++|.-++ |. +-.-|.....+|++|+||+|+| -.|..+|.|+.+.+... |+.++ .....
T Consensus 363 IH~gn~n~~~-~il~pYL----P~--e~ass~~~eGGalyalGLI~Ag-fgr~~TeYL~e~~~~te--De~~~--~l~yG 430 (926)
T COG5116 363 IHLGNSNPGY-EILKPYL----PS--EVASSRQKEGGALYALGLIKAG-FGREDTEYLLEYFLDTE--DELTP--ELAYG 430 (926)
T ss_pred EeeccCCchh-HhhhccC----Cc--ccchhhhccCceeeeehhhccC-cCcccHHHHHHHhCccc--ccccH--HHHHH
Confidence 3556555543 5665553 33 2334556778899999999999 66889999997665542 22121 33445
Q ss_pred HHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccccccccchhHHHHHHHH
Q 000210 1137 AGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLM 1216 (1854)
Q Consensus 1137 AGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA~lALgLi 1216 (1854)
+++++||+++|+.+. .+.|.|..+.... -.+...+|.+..||+
T Consensus 431 ~~LGiGL~~MgSan~------eiye~lKe~l~nD-------------------------------~a~~geAa~~gMGl~ 473 (926)
T COG5116 431 VCLGIGLINMGSANR------EIYEKLKELLKND-------------------------------RALLGEAAVYGMGLL 473 (926)
T ss_pred HHhhhcchhcccccH------HHHHHHHHHHhcc-------------------------------hhhhhhhhhhcccee
Confidence 778899999998764 3778888865211 123445788999999
Q ss_pred HhCCCCHHHHhhcCCCCccccccccCchhHHHHHHHH--HHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCC
Q 000210 1217 FLKTESEAIVSRLSIPNTHFDLQYVRPDFIMLRVIAR--NLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMD 1294 (1854)
Q Consensus 1217 ylkT~n~~ia~~L~iP~t~~~ld~vRPd~lllR~lA~--~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d 1294 (1854)
.++|+..+..+.|.--..+.+.++ +.|.++. .||.+-+-+-..+.| .+... +.|
T Consensus 474 mLgt~s~eai~dm~tya~ETqhe~------i~Rglgig~aLi~ygrqe~add~I--------~ell~----------d~d 529 (926)
T COG5116 474 MLGTWSVEAIEDMRTYAGETQHER------IKRGLGIGFALILYGRQEMADDYI--------NELLY----------DKD 529 (926)
T ss_pred eecCCCHHHHHHHHHHhcchhhhh------HHhhhhhhhhHhhhhhHHHHHHHH--------HHHhc----------Cch
Confidence 999999887777732233335555 4466665 677776643333333 22211 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhh-hcccccccc-CCC-CCC-----Cccccccch-h-H
Q 000210 1295 AETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLN-EIKPVFATR-GNA-FPK-----GLSRYVDRC-T-L 1364 (1854)
Q Consensus 1295 ~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~-~~~pla~~~-~~~-~p~-----~~~~~l~r~-t-~ 1364 (1854)
+ + .++|..|++|+.|+||+|..+...|+||+....+ .+++.+.-. +-. +++ +..+.+... + .
T Consensus 530 s--~------lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~h 601 (926)
T COG5116 530 S--I------LRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFH 601 (926)
T ss_pred H--H------hhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchh
Confidence 1 2 7899999999999999999999999999655442 233322211 000 000 001111110 0 1
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhc
Q 000210 1365 EICLHLVVLSLSVVMAGSGHLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFL 1421 (1854)
Q Consensus 1365 ~~cl~v~~lALslVmAGTGdl~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfL 1421 (1854)
-.| -+++|||+.+||||+--....|..|-.+.. | =-..++-+|+|+..+
T Consensus 602 VR~--g~AvaLGiacag~G~~~a~diL~~L~~D~~-d-----fVRQ~AmIa~~mIl~ 650 (926)
T COG5116 602 VRA--GVAVALGIACAGTGDKVATDILEALMYDTN-D-----FVRQSAMIAVGMILM 650 (926)
T ss_pred hhh--hhHHHhhhhhcCCccHHHHHHHHHHhhCcH-H-----HHHHHHHHHHHHHHh
Confidence 111 268999999999999999999998875432 1 133455566666544
No 9
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.6e-10 Score=137.39 Aligned_cols=102 Identities=24% Similarity=0.422 Sum_probs=81.2
Q ss_pred hHHhhccCCChHHHHHHHHHHHHhhcCC---CCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhH
Q 000210 1034 DIYKYFYQEHESTAVGLMLGLAASYRGT---MQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQT 1110 (1854)
Q Consensus 1034 ~i~~YL~~~he~tsiGlLLGlsaS~~GT---mD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m 1110 (1854)
++.+||....+.+..|+|||+|++..|- +|+.+. +|+-|+.. -+..+..+|++|||+.|.||++..+
T Consensus 419 qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalA-LLsdyv~~---------~~s~~ri~aIlGLglayaGsq~e~V 488 (878)
T KOG2005|consen 419 QLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALA-LLSDYLQS---------SSSIHRIGAILGLGLAYAGSQREEV 488 (878)
T ss_pred HHHHHhhcCCchhhhccceeeeeeccccccccCHHHH-HHHHhccC---------CCceeehHHhhhhHHhhcCCchHHH
Confidence 6889999999999999999999999885 788875 99999742 2446889999999999999999998
Q ss_pred HHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCC
Q 000210 1111 MQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGED 1151 (1854)
Q Consensus 1111 ~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~ 1151 (1854)
.+.|..-+.....+ .|.-+ .|+|+||+|+.|..++
T Consensus 489 ~~lL~Pi~~d~~~~-----~ev~~-~aslsLG~IfvGscn~ 523 (878)
T KOG2005|consen 489 LELLSPIMFDTKSP-----MEVVA-FASLSLGMIFVGSCNE 523 (878)
T ss_pred HHHHhHHhcCCCCc-----hhHHH-HHHhhcceeEEecCCh
Confidence 88555444333222 23334 5899999999999876
No 10
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.2e-05 Score=93.67 Aligned_cols=333 Identities=17% Similarity=0.253 Sum_probs=190.0
Q ss_pred CCcceeecccCCCCc--hhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCC---HHHHHHHh
Q 000210 997 MSRTWIMYNKPEEPN--ITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQ---PVISKSLY 1071 (1854)
Q Consensus 997 i~~sWI~~Nkp~~~~--~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD---~~ltklLs 1071 (1854)
.|-+||..||-.++. ...-|.+.-|-+.-.|. .+.+||....+.+..|+|||+|+|..|-.| +.+ -+|+
T Consensus 383 ~dd~wiyk~k~~gliSa~aSIG~i~~WN~d~gl~-----~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~pal-alLs 456 (881)
T COG5110 383 LDDEWIYKCKVPGLISAFASIGVIESWNSDKGLE-----TLDKYLYADESYRKAGALLGIGLSGLRVFEERPPAL-ALLS 456 (881)
T ss_pred cchhhhhcCCCCChhheeecchhhhhhhhHhhHH-----HHHHHHhcCcccccccceeeeeecccccccccchHH-HHHH
Confidence 355999999987764 34456666666553332 578999999999999999999999987644 444 4777
Q ss_pred cccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCC
Q 000210 1072 VHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGED 1151 (1854)
Q Consensus 1072 vHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~ 1151 (1854)
-.+. +-+....+||++|||+.|.||++.++-+.|..-+.+...+ -|. +..|.|+||.|+.|..+.
T Consensus 457 ~yl~---------s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~std~p-----ie~-~~~asltLg~vFvGtcng 521 (881)
T COG5110 457 NYLQ---------SSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFSTDSP-----IEV-VFFASLTLGSVFVGTCNG 521 (881)
T ss_pred Hhcc---------CCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcCCCCc-----HHH-HHHHHHhhhheEeeccCc
Confidence 7653 2345688999999999999999999999887655443322 122 446899999999998875
Q ss_pred cCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccccccccchhH--HHHHHHHHhCCCCHH--HHh
Q 000210 1152 ALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGA--IIALSLMFLKTESEA--IVS 1227 (1854)
Q Consensus 1152 ~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA--~lALgLiylkT~n~~--ia~ 1227 (1854)
. +.-.+.+.+.. .|+.. .+ |.-+. +++||..|+|.+++. +..
T Consensus 522 D--~ts~ilqtf~E--r~~~e-~~-----------------------------tqw~RFlaLgLa~Lf~g~~d~~d~v~e 567 (881)
T COG5110 522 D--LTSLILQTFVE--RGKIE-SE-----------------------------TQWFRFLALGLASLFYGRKDQVDDVEE 567 (881)
T ss_pred h--HHHHHHHHHHH--hhhhh-hh-----------------------------hHHHHHHHHHHHHHHccccchhHHHHH
Confidence 3 11113333322 22200 00 11133 456666788877742 211
Q ss_pred hc-CCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCChHHHHHHHHHHH
Q 000210 1228 RL-SIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIV 1306 (1854)
Q Consensus 1228 ~L-~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d~e~~~qay~~Ii 1306 (1854)
-+ +| +.- +..-+.-||--.++..|.+-. .++.... ..+ +.+.+++...-+-|-
T Consensus 568 ti~aI-------eg~------ls~~~eiLv~~c~Y~GTGdvl------~Iq~lLh-----v~~--e~~~D~~k~~ea~ie 621 (881)
T COG5110 568 TIMAI-------EGA------LSKHEEILVKGCQYVGTGDVL------VIQSLLH-----VKD--EFTGDTLKNEEALIE 621 (881)
T ss_pred HHHHh-------cch------hhhhHHHHHhhceecccCcHH------HHHHHHh-----ccC--CCCcccchhhHHHHH
Confidence 11 22 110 000111233333343433322 1111111 111 234444443444466
Q ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccccchhHHHHHHHHHHHHHHHHhcCCchH
Q 000210 1307 AGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSGHLQ 1386 (1854)
Q Consensus 1307 aGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~l~r~t~~~cl~v~~lALslVmAGTGdl~ 1386 (1854)
.=|.+++++---|.- ..+-=.|.|+. +.+- |.. .++++ ++-+|+|++-+.---.+
T Consensus 622 ~~a~Lg~AliamGed-ig~eMvlRhf~-h~mh------------yg~---~hiR~--------~~PLa~gils~SnPQm~ 676 (881)
T COG5110 622 SLALLGCALIAMGED-IGSEMVLRHFS-HSMH------------YGS---SHIRS--------VLPLAYGILSPSNPQMN 676 (881)
T ss_pred HHHHhhhHHhhhcch-hhHHHHHHHhh-hHhh------------cCc---HHHHH--------HHHHHHhcccCCCcchH
Confidence 666666666555542 11211222221 1110 100 12222 46789999999999999
Q ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCCChhhHHHHHHHHhccCCC
Q 000210 1387 TFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLYPRLPS 1448 (1854)
Q Consensus 1387 vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~TlstS~~AIA~LlialyP~fP~ 1448 (1854)
||..|..-.... |- ...|-+..|+|+. |.| |+|.-+|-||-.++..|-+
T Consensus 677 vfDtL~r~shd~--dl----~v~~ntIfamGLi--GAG-----T~NaRlaqlLrQlaSYY~k 725 (881)
T COG5110 677 VFDTLERSSHDG--DL----NVIINTIFAMGLI--GAG-----TLNARLAQLLRQLASYYYK 725 (881)
T ss_pred HHHHHHHhcccc--ch----hHHHHHHHHhhcc--ccC-----cchHHHHHHHHHHHHHHhh
Confidence 998886443222 22 2444455567765 444 6899999999988866643
No 11
>KOG1858 consensus Anaphase-promoting complex (APC), subunit 1 (meiotic check point regulator/Tsg24) [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=6.9e-05 Score=101.19 Aligned_cols=422 Identities=20% Similarity=0.215 Sum_probs=220.3
Q ss_pred ChhhHHHHHhhhcccCCccccCCcceeeccc-CCCCchhhHHHHHHhhcc--CccCcCCHhhHHhhccC----C------
Q 000210 976 SWPEFHNAVAAGLRLSPIQGKMSRTWIMYNK-PEEPNITHAGLLLALGLH--GHLRALTISDIYKYFYQ----E------ 1042 (1854)
Q Consensus 976 ~W~~FHnGVAaGL~is~~~~~i~~sWI~~Nk-p~~~~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~~----~------ 1042 (1854)
.=..-|+|.--||.+...- +.-..|=.|+= .+..+...-|+|+|++-. |-...=-.-.+.-||.. .
T Consensus 850 ~~~a~haGfl~glGLnGhL-~~L~~~~i~qyls~~h~~tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~El~i 928 (1496)
T KOG1858|consen 850 ELTAEHAGFLFGLGLNGHL-KALNTWHIYQYLSPKHEMTSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATSTELNI 928 (1496)
T ss_pred Ccchheeheeeeccccccc-ccccHHHHHHHccCCCcceeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcccccC
Confidence 3345688877777777542 34456666651 112234678999999974 54332111123334332 1
Q ss_pred ChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCcc--CCcchHhHHHHHHHHHHhhcCCCCh--hHHHH-HHHH
Q 000210 1043 HESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVE--LEVPTILQSAALMSVGLLYEGSAHP--QTMQI-LLGE 1117 (1854)
Q Consensus 1043 he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~d--l~vs~~vQtaAllglGLLY~GS~hr--~m~e~-LL~e 1117 (1854)
...+++|+++|+|.-|.||+...+.++|-.-|.+.. ..| ++--.+--+|| +++||++.|-++- .|.+. +.++
T Consensus 929 ~~~iQtAaIvGlGlLy~gS~h~~iaevL~~Eigr~~--~~e~~~~rE~Y~laAG-~SLGLi~LG~G~~~~g~~d~~~~~~ 1005 (1496)
T KOG1858|consen 929 PLLIQTAAIVGLGLLYAGSAHRRIAEVLLAEIGRPP--NPENVLEREGYKLAAG-FSLGLINLGRGSNLPGMSDLKLVSR 1005 (1496)
T ss_pred chhhhhhhhhhhhheecCcchHHHHHHHHHHhcCCC--CcccchhhhhhhhhcC-cccceeeeccCCCCcchhcccchHH
Confidence 358899999999999999999999999999887632 222 23333444444 8999999887653 34443 3333
Q ss_pred Hcc-------CCCCCCcccchhh-----------------HHHHHHHHHHHHhcCCCCcCC----chhh-----------
Q 000210 1118 IGR-------RSGGDNVLEREGH-----------------AVSAGFALGLVALGRGEDALG----FTDT----------- 1158 (1854)
Q Consensus 1118 I~~-------~~~~d~~~~rE~Y-----------------~laAGlALGLV~LGkG~~~~g----l~D~----------- 1158 (1854)
+.. ++.. .-++|.| +=.|.+||||++|-.++.... ..|.
T Consensus 1006 l~~ym~~g~~r~~~--~~~~~~~~~~~q~~eg~t~~~dv~~pGAviAl~mmflktnn~~Ia~~l~~p~t~yll~~vrPd~ 1083 (1496)
T KOG1858|consen 1006 LLVYMVGGVRRPID--VPQNEKYRSSTQILEGSTSNLDVTAPGAVIALGMMFLKTNNFEIANALRPPDTRYLLDFVRPDF 1083 (1496)
T ss_pred HHHHhhcccccccc--ccccccccchhhhccCceeeeecCCccHHHHHHHHHHHhchHHHHhhcCCCchhhHHhhcchHH
Confidence 322 1110 0001111 227899999999988875421 1111
Q ss_pred HHHHHHHHhCCcccccccccccccc-cccccccccccccCcc--ccccc---------cchhHHHHHHHHHhCCCCHHHH
Q 000210 1159 LVGRLFHYIGGKEVHNERSHFLSLS-ADENNRCAGQMMDGTM--VNVDV---------TAPGAIIALSLMFLKTESEAIV 1226 (1854)
Q Consensus 1159 l~e~L~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~i~eg~~--in~dv---------t~pgA~lALgLiylkT~n~~ia 1226 (1854)
+..|... .+.-+ .++ +.+. .=.+++.+.-|+++-. .++|+ .-.||++++||=|++|||-.+-
T Consensus 1084 l~lR~~a--~~lIm-W~~---I~p~~~wv~~~vp~~ir~~~~~~~dvd~~tl~q~~~~~~aGac~slgLrfagt~n~~ak 1157 (1496)
T KOG1858|consen 1084 LLLRVIA--RNLIM-WDR---IKPDYDWVKSQVPDVIREQADLQEDVDLETLSQAYVNILAGACFSLGLRFAGTGNLKAK 1157 (1496)
T ss_pred HHHHHHH--hhhhH-HHh---hCchHHHHHhhCCHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccCChhHH
Confidence 1111111 00000 000 0000 0001111111222211 12333 2349999999999999997655
Q ss_pred hhcCCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCChHHHHHHHHHHH
Q 000210 1227 SRLSIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIV 1306 (1854)
Q Consensus 1227 ~~L~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d~e~~~qay~~Ii 1306 (1854)
+-+.- +..+++| - -+.| .....+.++.-++. -++
T Consensus 1158 nil~s----~v~~fl~-------l-------------------~~~P------------~~~~~~~~~~~tv~----~cl 1191 (1496)
T KOG1858|consen 1158 NILNS----FVDDFLR-------L-------------------CSLP------------LKSNDGRVTAVTVE----RCL 1191 (1496)
T ss_pred HHHHH----HHHHHHH-------H-------------------hhcc------------CccCCCcccchhHH----HHH
Confidence 54410 1122211 0 0011 00111111111111 245
Q ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccccchhHHHHHHHHHHHHHHHHhcCC---
Q 000210 1307 AGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYVDRCTLEICLHLVVLSLSVVMAGSG--- 1383 (1854)
Q Consensus 1307 aGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~l~r~t~~~cl~v~~lALslVmAGTG--- 1383 (1854)
.-.++++.+-.|||+|.+++..+ .|++.-.. .++ .+..++ ..+.-+|+|+++.|.|
T Consensus 1192 ~v~i~sls~vmagSgdleVlr~~-----r~Lr~~~~-------~~~-----~~~yg~----~ma~h~alGil~lG~Gr~t 1250 (1496)
T KOG1858|consen 1192 SVLIISLSMVMAGSGDLEVLRRL-----RFLRSRTS-------PYG-----HMNYGA----QMATHMALGILFLGGGRYT 1250 (1496)
T ss_pred HHHHHHHHHHHhhcCchHHHHHH-----HHHHHhcc-------CCC-----cccchh----HHHHHHhhceeEecCcccc
Confidence 56678889999999999998765 34442110 011 122222 1123455666666544
Q ss_pred ----chHHHHHHHHHhcccCC---CC-------------cccHHHHHHHHHHHHHhhcCCCceeeCCCh-hhHHHHHHHH
Q 000210 1384 ----HLQTFRLLRFLRGRNSA---DG-------------HASYGIQMAVSLAIGFLFLGGGMRTFSTNN-NSIAALFISL 1442 (1854)
Q Consensus 1384 ----dl~vlr~LR~L~~~~~~---d~-------------~~~yG~~mAv~mAlGlLfLGgG~~TlstS~-~AIA~Llial 1442 (1854)
|..|+..+=.|.-+... |. .+.++...-...+.|+++++-|+++.++.. ...+-+--.+
T Consensus 1251 ~s~s~~sIa~ll~slfp~fP~~~~Dnr~hlqalR~l~~La~e~r~lip~didt~~~~l~~~~v~~k~~~~~~~~~iap~l 1330 (1496)
T KOG1858|consen 1251 ISTSNLSIAALLISLFPHFPISPSDNRYHLQALRHLYVLAVEPRLLIPRDIDTGQPCLAPLNVVQKGTTLYSLTEIAPIL 1330 (1496)
T ss_pred cCCCcHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHhcccccccccccccCceEEEeeeEEecccchhhhhhcCCee
Confidence 44555544444332211 10 133455566678999999999999999864 3444222234
Q ss_pred hccCCCCCCCchhhHHHHHH-HHhhccCceEEEEeeCCCC
Q 000210 1443 YPRLPSGPNDNRCHLQAFRH-LYVLATEARWIQTVDVDTG 1481 (1854)
Q Consensus 1443 yP~fP~~~~Dn~~HLQalRH-l~vLAvePR~Lv~~Dvdt~ 1481 (1854)
.|-|- .. .-.+..-| +|-+++|+++..-.++.++
T Consensus 1331 LP~~~---~l--~~v~v~g~~yw~~~iel~~~~~~~~ks~ 1365 (1496)
T KOG1858|consen 1331 LPEYS---TL--SSVSVLGPNYWPVKIELSFNSQHLEKSN 1365 (1496)
T ss_pred ccccc---cc--hhhhhcCCccceEEEecccchhhccccc
Confidence 44441 11 11233445 8999999988877777654
No 12
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=95.89 E-value=0.0064 Score=50.53 Aligned_cols=28 Identities=43% Similarity=0.648 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHH
Q 000210 1308 GACISLGLRFAGTKNANVQELLYGYAVY 1335 (1854)
Q Consensus 1308 GaclAlGLryAGT~n~~A~~~Ll~y~~~ 1335 (1854)
|||+||||.||||+|.++.+.|.+|+..
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~ 28 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSD 28 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCT
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999987543
No 13
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=93.13 E-value=0.12 Score=43.14 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHcc
Q 000210 1093 AALMSVGLLYEGSAHPQTMQILLGEIGR 1120 (1854)
Q Consensus 1093 aAllglGLLY~GS~hr~m~e~LL~eI~~ 1120 (1854)
+|++||||+|+||++.++.+.|...+..
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~ 28 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSD 28 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCT
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999887643
No 14
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=36.31 E-value=28 Score=45.83 Aligned_cols=62 Identities=31% Similarity=0.558 Sum_probs=50.1
Q ss_pred HHhhhcccCCccccCCcceeecccCCCCchhhHHHHHHhhc-cCccCcC-CHhhHHhhccCCC---hHHHHHHHHHHHHh
Q 000210 983 AVAAGLRLSPIQGKMSRTWIMYNKPEEPNITHAGLLLALGL-HGHLRAL-TISDIYKYFYQEH---ESTAVGLMLGLAAS 1057 (1854)
Q Consensus 983 GVAaGL~is~~~~~i~~sWI~~Nkp~~~~~~hAGfLlgLGL-nGhL~~L-~~~~i~~YL~~~h---e~tsiGlLLGlsaS 1057 (1854)
+|++||.+.+ |.+..|.|...|-|| +|.=+++ -.|-+++|..+.+ |.++.|.--|.+||
T Consensus 199 sV~gGL~~GK----------------EGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAA 262 (762)
T KOG0474|consen 199 SVAGGLAVGK----------------EGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAA 262 (762)
T ss_pred hhhhhhhccC----------------cCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHH
Confidence 5889997775 456789999999999 4655554 4578999998864 69999999999999
Q ss_pred hcC
Q 000210 1058 YRG 1060 (1854)
Q Consensus 1058 ~~G 1060 (1854)
++.
T Consensus 263 F~A 265 (762)
T KOG0474|consen 263 FRA 265 (762)
T ss_pred hCC
Confidence 864
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.60 E-value=1.3e+02 Score=42.60 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=90.2
Q ss_pred hhhHHHHHHhhccCc-cCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCC---HHHHHHHhcccCCCCCCCccCCcc
Q 000210 1012 ITHAGLLLALGLHGH-LRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQ---PVISKSLYVHIPARHPSSVELEVP 1087 (1854)
Q Consensus 1012 ~~hAGfLlgLGLnGh-L~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD---~~ltklLsvHi~alLP~~~dl~vs 1087 (1854)
++.+==.+|++|.|. +-..-..++-.+|...+-.-+.++|+.+|+..=|..| ..+-+++.+.++.| -+-.
T Consensus 329 A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l------~Dph 402 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL------NDPH 402 (1075)
T ss_pred HHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc------CCCC
Confidence 455556789999873 3333334677778888889999999999999988755 34555565554433 2456
Q ss_pred hHhHHHHHHHHHHh-------hcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHH
Q 000210 1088 TILQSAALMSVGLL-------YEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLV 1160 (1854)
Q Consensus 1088 ~~vQtaAllglGLL-------Y~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~ 1160 (1854)
+.||-||+-+||-+ .+...|.++...|+..+.+.. + ...++.||.-.+++---.-|+......|.+.
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-~-----~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm 476 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-N-----VRVQAHAAAALVNFSEECDKSILEPYLDGLM 476 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-c-----hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 89999999999976 444556666666665554432 1 2345555555555554444444434445566
Q ss_pred HHHHH
Q 000210 1161 GRLFH 1165 (1854)
Q Consensus 1161 e~L~~ 1165 (1854)
+++..
T Consensus 477 ~~~l~ 481 (1075)
T KOG2171|consen 477 EKKLL 481 (1075)
T ss_pred HHHHH
Confidence 64443
No 16
>TIGR01909 C_GCAxxG_C_C C_GCAxxG_C_C family probable redox protein. This model represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.
Probab=21.58 E-value=1.5e+02 Score=31.72 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhcc
Q 000210 1303 VNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIK 1341 (1854)
Q Consensus 1303 ~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~ 1341 (1854)
+-.++|++++||+.|+-....+..+.+..+...|.++++
T Consensus 41 CGAlsGa~~~lgl~~g~~~~~~~~~~~~~~~~el~~~F~ 79 (120)
T TIGR01909 41 CGALTGAVMALGLYFGTEGDGEQVNNTYALCAELYEKFR 79 (120)
T ss_pred hhhHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Confidence 468999999999999743333444445555555555444
Done!