Query 000210
Match_columns 1854
No_of_seqs 265 out of 509
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 01:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 100.0 5.6E-36 1.9E-40 388.7 27.8 385 974-1483 370-780 (963)
2 4ady_A RPN2, 26S proteasome re 99.8 3.3E-18 1.1E-22 223.3 22.6 318 998-1443 363-694 (963)
3 3pbp_A Nucleoporin NUP82; beta 13.1 1.4E+02 0.0049 37.0 4.6 39 88-127 112-158 (452)
4 3ltm_A Alpha-REP4; protein eng 9.6 1.4E+03 0.048 23.7 10.7 106 1012-1144 65-170 (211)
5 3ltj_A Alpharep-4; protein eng 9.1 1.4E+03 0.05 23.3 10.7 106 1012-1144 60-165 (201)
6 1oyz_A Hypothetical protein YI 6.2 1.8E+03 0.062 23.9 10.1 86 1034-1144 132-219 (280)
7 3ltj_A Alpharep-4; protein eng 6.1 1.9E+03 0.067 22.3 10.4 88 1012-1118 91-178 (201)
8 4h3o_A Lectin; cadmium, plant 5.0 6.9E+02 0.024 24.3 4.8 14 384-397 86-99 (105)
9 1te4_A Conserved protein MTH18 4.4 1.8E+03 0.061 21.3 7.6 86 1033-1143 45-130 (131)
10 2x3m_A Hypothetical protein OR 4.1 1E+03 0.034 25.4 5.3 39 1238-1280 104-143 (239)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=100.00 E-value=5.6e-36 Score=388.68 Aligned_cols=385 Identities=17% Similarity=0.263 Sum_probs=287.4
Q ss_pred CCChhhHHHHHhhhcccCCcc---ccCCcceeecccCCCCchhhHHHHHHhhcc--CccCcCCHhhHHhhccCCC-----
Q 000210 974 LKSWPEFHNAVAAGLRLSPIQ---GKMSRTWIMYNKPEEPNITHAGLLLALGLH--GHLRALTISDIYKYFYQEH----- 1043 (1854)
Q Consensus 974 ~~~W~~FHnGVAaGL~is~~~---~~i~~sWI~~Nkp~~~~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~~~h----- 1043 (1854)
..+|+.|.+..|.|+-..... -..-...+. +...+..+..+|+||||||. ||.+. ....+.+||...+
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~-~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~~L~~~~~~~~~ 447 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLLEGKKVMAPYLP-GSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKNIIVENSGTSGD 447 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTST-TSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHSSCCSC
T ss_pred cchHHHHHHHHHhhhhccCchHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHcCccccccc
Confidence 379999999999999443221 111222221 11134468999999999994 77642 1224556665443
Q ss_pred ---hHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHcc
Q 000210 1044 ---ESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGR 1120 (1854)
Q Consensus 1044 ---e~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~ 1120 (1854)
+.+++|+.||||.+|+||+|+++.+.|.-.+ .+- +..+..+|.+||||+|+||+|..+++.|++.+..
T Consensus 448 ~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L-------~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 448 EDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL-------YND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH-------HTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------hcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 7899999999999999999999999985443 211 1245568899999999999999999999987754
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHhcCCCCcCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccc
Q 000210 1121 RSGGDNVLEREGHAVSAGFALGLVALGRGEDALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMV 1200 (1854)
Q Consensus 1121 ~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~i 1200 (1854)
. ++|.++++|++|||||++|+++.+ |.+++.|.. .+
T Consensus 519 ~-------~~e~vrR~aalgLGll~~g~~e~~----~~li~~L~~--------~~------------------------- 554 (963)
T 4ady_A 519 T-------QHGNITRGLAVGLALINYGRQELA----DDLITKMLA--------SD------------------------- 554 (963)
T ss_dssp C-------SCHHHHHHHHHHHHHHTTTCGGGG----HHHHHHHHH--------CS-------------------------
T ss_pred c-------CcHHHHHHHHHHHHhhhCCChHHH----HHHHHHHHh--------CC-------------------------
Confidence 2 267899999999999999999876 557777765 11
Q ss_pred cccccchhHHHHHHHHHhCCCCHHHHhhc-CCCCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhh
Q 000210 1201 NVDVTAPGAIIALSLMFLKTESEAIVSRL-SIPNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSN 1279 (1854)
Q Consensus 1201 n~dvt~pgA~lALgLiylkT~n~~ia~~L-~iP~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~ 1279 (1854)
-.+...||++|+||+|+||||..+.++| ++ +.++.-.|.....++|.++|+..+- +++|+++...
T Consensus 555 -dp~vRygaa~alglAyaGTGn~~aIq~LL~~-----~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L 620 (963)
T 4ady_A 555 -ESLLRYGGAFTIALAYAGTGNNSAVKRLLHV-----AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLL 620 (963)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH-----HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTG
T ss_pred -CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHH
Confidence 1123569999999999999999988855 54 2222233444788999999988762 4566655432
Q ss_pred hhhccCCCCCcccCChHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhhhhccccccccCCCCCCCccccc
Q 000210 1280 VEALRDDTSDVDEMDAETFVQAYVNIVAGACISLGLRFAGTKNANVQELLYGYAVYFLNEIKPVFATRGNAFPKGLSRYV 1359 (1854)
Q Consensus 1280 ~~~~~~~~~~~~~~d~e~~~qay~~IiaGaclAlGLryAGT~n~~A~~~Ll~y~~~fl~~~~pla~~~~~~~p~~~~~~l 1359 (1854)
.+ .-| + +|+.||++|+|+-+||+++.+|.++|..+.. .+ ++.+
T Consensus 621 ~~----------~~d------~--~VR~gAalALGli~aGn~~~~aid~L~~L~~-----------D~--------d~~V 663 (963)
T 4ady_A 621 SK----------SHN------A--HVRCGTAFALGIACAGKGLQSAIDVLDPLTK-----------DP--------VDFV 663 (963)
T ss_dssp GG----------CSC------H--HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-----------CS--------SHHH
T ss_pred Hh----------cCC------H--HHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-----------CC--------CHHH
Confidence 21 122 1 5999999999999999999999998765421 00 1234
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCC------
Q 000210 1360 DRCTLEICLHLVVLSLSVVMAGSGHL---QTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFST------ 1430 (1854)
Q Consensus 1360 ~r~t~~~cl~v~~lALslVmAGTGdl---~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~Tlst------ 1430 (1854)
++. +++|||+|++||+|. +|...+|+|.+++.. .|..-.+.|++++|||++++|||+.|+++
T Consensus 664 rq~--------Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d-k~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~ 734 (963)
T 4ady_A 664 RQA--------AMIALSMILIQQTEKLNPQVADINKNFLSVITN-KHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTG 734 (963)
T ss_dssp HHH--------HHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTC
T ss_pred HHH--------HHHHHHHHhcCCccccchHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCC
Confidence 443 799999999999999 999999999988763 33456799999999999999999999997
Q ss_pred --ChhhHHHHHHHHhccCCCCCCCchhhHHHHHHHHhhccCceEEEEeeC-CCCCe
Q 000210 1431 --NNNSIAALFISLYPRLPSGPNDNRCHLQAFRHLYVLATEARWIQTVDV-DTGLP 1483 (1854)
Q Consensus 1431 --S~~AIA~LlialyP~fP~~~~Dn~~HLQalRHl~vLAvePR~Lv~~Dv-dt~~p 1483 (1854)
++.|+|||+++...| ||.+|.||.+||+.|||||++|+ |.+.|
T Consensus 735 ~~~~~a~~Gl~~f~q~w----------yw~pl~~~lsla~~Pt~li~l~e~dL~~p 780 (963)
T 4ady_A 735 TLDTKSVVGLVMFSQFW----------YWFPLAHFLSLSFTPTTVIGIRGSDQAIP 780 (963)
T ss_dssp CBCHHHHHHHHHHTTTT----------TCGGGGGGGGGGEEECBEEEEETTTTBEE
T ss_pred CCCHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCcEEEEecccccCCC
Confidence 268999999975332 33348999999999999999999 86534
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.78 E-value=3.3e-18 Score=223.26 Aligned_cols=318 Identities=17% Similarity=0.197 Sum_probs=211.2
Q ss_pred CcceeecccCCCCchhhHHHHHHhhcc--CccCcCCHhhHHhhcc---CCChHHHHHHHHHHHHhhcCCCCHHHHHHHhc
Q 000210 998 SRTWIMYNKPEEPNITHAGLLLALGLH--GHLRALTISDIYKYFY---QEHESTAVGLMLGLAASYRGTMQPVISKSLYV 1072 (1854)
Q Consensus 998 ~~sWI~~Nkp~~~~~~hAGfLlgLGLn--GhL~~L~~~~i~~YL~---~~he~tsiGlLLGlsaS~~GTmD~~ltklLsv 1072 (1854)
..+|+..|+ +....|++.+||+. ||.+. ....+.+||. ...+.+..|+|+|+|..+.|+.++ +..+|.-
T Consensus 363 ~~~Wl~k~~----~~~k~sA~aSLGlIh~g~~~~-gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~ 436 (963)
T 4ady_A 363 NLPWLGKAQ----NWAKFTATASLGVIHKGNLLE-GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKN 436 (963)
T ss_dssp CHHHHHHCC----THHHHHHHHHHHHHTSSCTTT-HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHH
T ss_pred chhhhhccc----hHHHHHHHHHhhhhccCchHH-HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHH
Confidence 357998765 46789999999994 77753 3457889998 567899999999999999999985 5688877
Q ss_pred ccCCCCCCC-ccCCcchHhHHHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHHhcCCCC
Q 000210 1073 HIPARHPSS-VELEVPTILQSAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVALGRGED 1151 (1854)
Q Consensus 1073 Hi~alLP~~-~dl~vs~~vQtaAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~LGkG~~ 1151 (1854)
|+.. +.. +.-+-...++.+|++||||+|+||+++++.+.|+..|.... ...+-+||+|||||++|.|+.
T Consensus 437 ~L~~--~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~--------~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 437 IIVE--NSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS--------ATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHH--HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC--------HHHHHHHHHHHHHHHTTCCCH
T ss_pred HHcC--ccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC--------HHHHHHHHHHHhhhhcccCCH
Confidence 7631 000 00001246888999999999999999999999998775432 122348999999999999976
Q ss_pred cCCchhhHHHHHHHHhCCcccccccccccccccccccccccccccCccccccccchhHHHHHHHHHhCCCCHHHHhhcCC
Q 000210 1152 ALGFTDTLVGRLFHYIGGKEVHNERSHFLSLSADENNRCAGQMMDGTMVNVDVTAPGAIIALSLMFLKTESEAIVSRLSI 1231 (1854)
Q Consensus 1152 ~~gl~D~l~e~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~eg~~in~dvt~pgA~lALgLiylkT~n~~ia~~L~i 1231 (1854)
. .++.|.+++... .+ |-...+|++|||++|+|...
T Consensus 507 ~------ai~~LL~~~~e~--~~----------------------------e~vrR~aalgLGll~~g~~e--------- 541 (963)
T 4ady_A 507 E------AIHDMFTYSQET--QH----------------------------GNITRGLAVGLALINYGRQE--------- 541 (963)
T ss_dssp H------HHHHHHHHHHHC--SC----------------------------HHHHHHHHHHHHHHTTTCGG---------
T ss_pred H------HHHHHHHHHhcc--Cc----------------------------HHHHHHHHHHHHhhhCCChH---------
Confidence 3 667777765211 00 11234799999999998531
Q ss_pred CCccccccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhchHHHHhhhhhccCCCCCcccCChHHHHHHHHHHHHHHHH
Q 000210 1232 PNTHFDLQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQIPEIVKSNVEALRDDTSDVDEMDAETFVQAYVNIVAGACI 1311 (1854)
Q Consensus 1232 P~t~~~ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqiP~~v~~~~~~~~~~~~~~~~~d~e~~~qay~~IiaGacl 1311 (1854)
+++..++.... +-| + .+.+|+++
T Consensus 542 ---------------------------------------~~~~li~~L~~----------~~d------p--~vRygaa~ 564 (963)
T 4ady_A 542 ---------------------------------------LADDLITKMLA----------SDE------S--LLRYGGAF 564 (963)
T ss_dssp ---------------------------------------GGHHHHHHHHH----------CSC------H--HHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHh----------CCC------H--HHHHHHHH
Confidence 12222221111 011 2 48999999
Q ss_pred HHHhhhhccCCHHHHHHHHHHHHH----hhhhcccccccc-CCCCCCC---ccccccchhHHHHHHHHHHHHHHHHhcCC
Q 000210 1312 SLGLRFAGTKNANVQELLYGYAVY----FLNEIKPVFATR-GNAFPKG---LSRYVDRCTLEICLHLVVLSLSVVMAGSG 1383 (1854)
Q Consensus 1312 AlGLryAGT~n~~A~~~Ll~y~~~----fl~~~~pla~~~-~~~~p~~---~~~~l~r~t~~~cl~v~~lALslVmAGTG 1383 (1854)
|+|+.||||+|..|.+-|++++.. ++++.-.++..- ....++. +.+.+.++.-...-..+++|||++.||||
T Consensus 565 alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 565 TIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999998753 344322222221 0011221 11222221111222337999999999999
Q ss_pred chHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHhhcCCCceeeCCChhhHHHHHHHHh
Q 000210 1384 HLQTFRLLRFLRGRNSADGHASYGIQMAVSLAIGFLFLGGGMRTFSTNNNSIAALFISLY 1443 (1854)
Q Consensus 1384 dl~vlr~LR~L~~~~~~d~~~~yG~~mAv~mAlGlLfLGgG~~TlstS~~AIA~Llialy 1443 (1854)
+.+++..|..|..+.. -.-..++-.|+|++..|--. ..+.-||.++-.+.
T Consensus 645 ~~~aid~L~~L~~D~d------~~Vrq~Ai~ALG~Ig~gtnn----a~~~rva~~l~~L~ 694 (963)
T 4ady_A 645 LQSAIDVLDPLTKDPV------DFVRQAAMIALSMILIQQTE----KLNPQVADINKNFL 694 (963)
T ss_dssp CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHSTTCCT----TTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCC------HHHHHHHHHHHHHHhcCCcc----ccchHHHHHHHHHH
Confidence 9999999999975332 23566777888888765321 11124777766554
No 3
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=13.06 E-value=1.4e+02 Score=36.98 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=31.7
Q ss_pred Eeeec-------CccceeeeecccCCCccceEEEEecc-eEEEEecCC
Q 000210 88 KRFTL-------PSQVITVCWCHIGDISEALLCVLQIE-SLTIYNTSG 127 (1854)
Q Consensus 88 k~ft~-------~~~v~~A~wc~f~~~~e~~lCv~~~~-~l~v~~~~G 127 (1854)
|+|++ .++|+||+|.+.+.. ..||-||.+| ++++|+.+=
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~-ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYR-DSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGG-GCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCC-CCeEEEEecCCEEEEEEccc
Confidence 56776 478999999999876 5588888887 799998774
No 4
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=9.60 E-value=1.4e+03 Score=23.67 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=61.7
Q ss_pred hhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhH
Q 000210 1012 ITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQ 1091 (1854)
Q Consensus 1012 ~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQ 1091 (1854)
......+.+||-.|.-.. ...+.+.|...+..+...++-+|+--.--..=+.+.++| -+-+..|+
T Consensus 65 ~vr~~a~~aL~~~~~~~~--~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l-------------~d~~~~vr 129 (211)
T 3ltm_A 65 WVRRAAADALGQIGDERA--VEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKAL-------------KDEDWFVR 129 (211)
T ss_dssp HHHHHHHHHHHHHCCGGG--HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT-------------TCSSHHHH
T ss_pred HHHHHHHHHHHhhCCHHH--HHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH-------------hCCCHHHH
Confidence 445556666666553221 225667787888888888887776432111112222222 13356789
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHH
Q 000210 1092 SAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLV 1144 (1854)
Q Consensus 1092 taAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV 1144 (1854)
.+|+.+||-+ ++....+.|+.-+.. + .+.-+.+|.-+||-+
T Consensus 130 ~~a~~aL~~~----~~~~~~~~L~~~l~d-~-------~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 130 IAAAFALGEI----GDERAVEPLIKALKD-E-------DGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHHHHH----CCGGGHHHHHHHTTC-S-------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHcC-C-------CHHHHHHHHHHHHHh
Confidence 9999999976 345666777654422 1 234466777777776
No 5
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=9.07 E-value=1.4e+03 Score=23.31 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred hhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhH
Q 000210 1012 ITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQ 1091 (1854)
Q Consensus 1012 ~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQ 1091 (1854)
......+.+||-.|.-.. ...+.+.|...+..+...++-.|+-- |. +.....|.-.+ -+-+..|+
T Consensus 60 ~vr~~a~~~L~~~~~~~~--~~~L~~~l~d~~~~vr~~a~~aL~~~--~~--~~~~~~L~~~l---------~d~~~~vr 124 (201)
T 3ltj_A 60 WVRRAAADALGQIGDERA--VEPLIKALKDEDGWVRQSAAVALGQI--GD--ERAVEPLIKAL---------KDEDWFVR 124 (201)
T ss_dssp HHHHHHHHHHHHHCCGGG--HHHHHHHTTCSSHHHHHHHHHHHHHH--CC--GGGHHHHHHHT---------TCSSHHHH
T ss_pred HHHHHHHHHHHhhCCHHH--HHHHHHHHcCCCHHHHHHHHHHHHHh--Cc--HHHHHHHHHHH---------cCCCHHHH
Confidence 455666667776554321 22566777777778888877777653 32 22222221111 12356788
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHH
Q 000210 1092 SAALMSVGLLYEGSAHPQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLV 1144 (1854)
Q Consensus 1092 taAllglGLLY~GS~hr~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV 1144 (1854)
.+|+.+||-+ +.....+.|+.-+... .+.-+.+|..|||-+
T Consensus 125 ~~a~~aL~~~----~~~~~~~~L~~~l~d~--------~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 125 IAAAFALGEI----GDERAVEPLIKALKDE--------DGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHH----TCGGGHHHHHHHTTCS--------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHh
Confidence 8888888866 2456666666544221 234466777777766
No 6
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=6.19 E-value=1.8e+03 Score=23.89 Aligned_cols=86 Identities=7% Similarity=0.072 Sum_probs=49.4
Q ss_pred hHHhhccCCChHHHHHHHHHHHHhhcCCCC--HHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHH
Q 000210 1034 DIYKYFYQEHESTAVGLMLGLAASYRGTMQ--PVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTM 1111 (1854)
Q Consensus 1034 ~i~~YL~~~he~tsiGlLLGlsaS~~GTmD--~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~ 1111 (1854)
.+.+.|...+..+...++-.|+ ..|..+ +.+.++| -+-+..|+.+|+.+||-+ |.......
T Consensus 132 ~L~~~l~d~~~~vR~~a~~aL~--~~~~~~~~~~L~~~l-------------~d~~~~vr~~a~~aL~~~--~~~~~~~~ 194 (280)
T 1oyz_A 132 QSQITAFDKSTNVRRATAFAIS--VINDKATIPLLINLL-------------KDPNGDVRNWAAFAININ--KYDNSDIR 194 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHH--TC---CCHHHHHHHH-------------TCSSHHHHHHHHHHHHHH--TCCCHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH-------------cCCCHHHHHHHHHHHHhh--ccCcHHHH
Confidence 3455677777788777777665 334321 2333333 122456888888888876 55566777
Q ss_pred HHHHHHHccCCCCCCcccchhhHHHHHHHHHHH
Q 000210 1112 QILLGEIGRRSGGDNVLEREGHAVSAGFALGLV 1144 (1854)
Q Consensus 1112 e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV 1144 (1854)
+.|+..+... +..-+..|..+||-+
T Consensus 195 ~~L~~~l~d~--------~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 195 DCFVEMLQDK--------NEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHHHHHTTCS--------CHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC--------CHHHHHHHHHHHHHh
Confidence 7776654221 233456676777765
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=6.12 E-value=1.9e+03 Score=22.26 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=56.7
Q ss_pred hhhHHHHHHhhccCccCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhH
Q 000210 1012 ITHAGLLLALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQ 1091 (1854)
Q Consensus 1012 ~~hAGfLlgLGLnGhL~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQ 1091 (1854)
......+.+||-.|.-. ....+.+.|...+..+...++-+++-- | ++.....|.-.+ -+-+..++
T Consensus 91 ~vr~~a~~aL~~~~~~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~--~--~~~~~~~L~~~l---------~d~~~~vr 155 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDER--AVEPLIKALKDEDWFVRIAAAFALGEI--G--DERAVEPLIKAL---------KDEDGWVR 155 (201)
T ss_dssp HHHHHHHHHHHHHCCGG--GHHHHHHHTTCSSHHHHHHHHHHHHHH--T--CGGGHHHHHHHT---------TCSSHHHH
T ss_pred HHHHHHHHHHHHhCcHH--HHHHHHHHHcCCCHHHHHHHHHHHHHh--C--CHHHHHHHHHHH---------cCCCHHHH
Confidence 46677777777766432 123577888888888998888887754 3 222222221111 12356899
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHH
Q 000210 1092 SAALMSVGLLYEGSAHPQTMQILLGEI 1118 (1854)
Q Consensus 1092 taAllglGLLY~GS~hr~m~e~LL~eI 1118 (1854)
.+|+.+||-+ +.....+.|..-+
T Consensus 156 ~~A~~aL~~~----~~~~~~~~L~~~l 178 (201)
T 3ltj_A 156 QSAADALGEI----GGERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHH----CSHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CchhHHHHHHHHH
Confidence 9999999987 4577777777655
No 8
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=4.98 E-value=6.9e+02 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=12.3
Q ss_pred eEEecCCCeEEEec
Q 000210 384 IVVLAPDNALLLYS 397 (1854)
Q Consensus 384 IlVL~p~g~L~LYs 397 (1854)
.++|..+|+|+||.
T Consensus 86 ~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 86 ILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEeCCCeEEEEC
Confidence 57889999999994
No 9
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=4.36 E-value=1.8e+03 Score=21.26 Aligned_cols=86 Identities=9% Similarity=-0.069 Sum_probs=50.7
Q ss_pred hhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHH
Q 000210 1033 SDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQ 1112 (1854)
Q Consensus 1033 ~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e 1112 (1854)
..+.+.|...+..+...++-.|+- .| |+.....|.-.+ -+-+..|+.+|+.+||-+ ++....+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~--~~--~~~a~~~L~~~L---------~d~~~~VR~~A~~aL~~~----~~~~a~~ 107 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGN--FQ--DERAVEPLIKLL---------EDDSGFVRSGAARSLEQI----GGERVRA 107 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGG--GC--SHHHHHHHHHHH---------HHCCTHHHHHHHHHHHHH----CSHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh--cC--CHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHh----CcHHHHH
Confidence 456777888888888877766543 44 333322321111 123567999999999976 3567777
Q ss_pred HHHHHHccCCCCCCcccchhhHHHHHHHHHH
Q 000210 1113 ILLGEIGRRSGGDNVLEREGHAVSAGFALGL 1143 (1854)
Q Consensus 1113 ~LL~eI~~~~~~d~~~~rE~Y~laAGlALGL 1143 (1854)
.|+..+.. ++ ..-+.+|.-|||-
T Consensus 108 ~L~~~l~d---~~-----~~vr~~A~~aL~~ 130 (131)
T 1te4_A 108 AMEKLAET---GT-----GFARKVAVNYLET 130 (131)
T ss_dssp HHHHHTTS---CC-----THHHHHHHHHGGG
T ss_pred HHHHHHhC---CC-----HHHHHHHHHHHHh
Confidence 77765521 11 2345566666653
No 10
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=4.12 E-value=1e+03 Score=25.39 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=24.5
Q ss_pred ccccCchhHHHHHHHHHHHhhcCCCCChHHHHhhc-hHHHHhhh
Q 000210 1238 LQYVRPDFIMLRVIARNLIMWSRVYPSDDWIQSQI-PEIVKSNV 1280 (1854)
Q Consensus 1238 ld~vRPd~lllR~lA~~LImWd~I~pt~~wi~sqi-P~~v~~~~ 1280 (1854)
...+|||+ ...||+++---.- ...+|+.+.+ |++.++.+
T Consensus 104 akdirpdi--adalargmaglaf--grtdwvasml~P~I~R~iY 143 (239)
T 2x3m_A 104 AKDIRPDI--ADALARGMAGLAF--GRTDWVASMLDPQIMRHIY 143 (239)
T ss_dssp TTCCCHHH--HHHHHHHHHHHHH--TCHHHHGGGGCHHHHGGGT
T ss_pred hhccCccH--HHHHHhhhhcccc--cchHHHHHhhChHHHHHHH
Confidence 34689994 6677776533221 4579999977 45555544
Done!