Query 000210
Match_columns 1854
No_of_seqs 265 out of 509
Neff 5.4
Searched_HMMs 13730
Date Tue Mar 26 01:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000210.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000210hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oyza_ a.118.1.16 (A:) Hypoth 17.1 1E+02 0.0074 30.9 7.2 106 1020-1145 9-115 (276)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 12.4 32 0.0023 24.9 1.0 15 1090-1104 5-19 (32)
3 d2b5ib1 b.1.2.1 (B:6-103) Inte 12.0 41 0.003 30.8 1.8 55 78-132 15-87 (98)
4 d1kj1a_ b.78.1.1 (A:) Lectin ( 5.6 2.9E+02 0.021 24.9 4.9 15 384-398 86-100 (109)
5 d1te4a_ a.118.1.16 (A:) MTH187 5.5 7.3E+02 0.053 21.0 7.8 67 1033-1116 25-91 (111)
6 d1fs1b2 d.42.1.1 (B:2-68) Cycl 5.3 2.4E+02 0.017 23.3 3.7 31 444-474 2-32 (61)
7 d1dlpa2 b.78.1.1 (A:116-235) F 4.9 1.5E+02 0.011 27.6 2.3 15 384-398 101-115 (120)
8 d1jpca_ b.78.1.1 (A:) Lectin ( 4.8 3.4E+02 0.024 24.3 4.8 15 383-397 84-98 (108)
9 d1d3ba_ b.38.1.1 (A:) D3 core 4.0 1.4E+02 0.01 25.5 1.2 23 434-456 4-26 (72)
10 d1hv2a_ d.42.1.1 (A:) Elongin 4.0 2.6E+02 0.019 24.9 3.2 32 443-474 4-35 (99)
No 1
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=17.13 E-value=1e+02 Score=30.86 Aligned_cols=106 Identities=10% Similarity=0.038 Sum_probs=66.4
Q ss_pred HhhccCccCcCCHhhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHH
Q 000210 1020 ALGLHGHLRALTISDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVG 1099 (1854)
Q Consensus 1020 gLGLnGhL~~L~~~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglG 1099 (1854)
.+|+.+.-++.+...+++.|...+..+..-++-+|+. +|+ +.....|.--+ -+-+..++.+|+.+||
T Consensus 9 ~~~~~~~~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~--~~~--~~~~~~l~~~l---------~d~~~~vr~~a~~aL~ 75 (276)
T d1oyza_ 9 EYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQL--RGG--QDAVRLAIEFC---------SDKNYIRRDIGAFILG 75 (276)
T ss_dssp THHHHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHH--HCC--HHHHHHHHHHH---------TCSSHHHHHHHHHHHH
T ss_pred HHHhccccccCCHHHHHHHhcCCCHHHHHHHHHHHHh--hCC--HhHHHHHHHHH---------cCCCHHHHHHHHHHHH
Confidence 4677788888888899999999999999999988875 454 33333331110 1335779999999998
Q ss_pred HhhcCCCC-hhHHHHHHHHHccCCCCCCcccchhhHHHHHHHHHHHH
Q 000210 1100 LLYEGSAH-PQTMQILLGEIGRRSGGDNVLEREGHAVSAGFALGLVA 1145 (1854)
Q Consensus 1100 LLY~GS~h-r~m~e~LL~eI~~~~~~d~~~~rE~Y~laAGlALGLV~ 1145 (1854)
-+-..... ..+.+.++..+.+.+ .+.-+.+|.-+||-+.
T Consensus 76 ~l~~~~~~~~~~~~~l~~~~l~d~-------~~~vr~~a~~aL~~~~ 115 (276)
T d1oyza_ 76 QIKICKKCEDNVFNILNNMALNDK-------SACVRATAIESTAQRC 115 (276)
T ss_dssp HSCCCTTTHHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHH
T ss_pred HhccccccccchHHHHHHHHhcCC-------ChhHHHHHHHHHHHHc
Confidence 66544333 334444554443322 2233455666666543
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.42 E-value=32 Score=24.91 Aligned_cols=15 Identities=47% Similarity=0.809 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHhhcC
Q 000210 1090 LQSAALMSVGLLYEG 1104 (1854)
Q Consensus 1090 vQtaAllglGLLY~G 1104 (1854)
+--||+++.||+|+|
T Consensus 5 il~aa~lsfglifvg 19 (32)
T d2e74f1 5 MLYAALLSFGLIFVG 19 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 456899999999987
No 3
>d2b5ib1 b.1.2.1 (B:6-103) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.98 E-value=41 Score=30.77 Aligned_cols=55 Identities=20% Similarity=0.392 Sum_probs=37.9
Q ss_pred EEEecCCe-------eE-Ee------eecC-ccceeeee-ccc--CCCccceEEEEecceEEEEecCCceEee
Q 000210 78 IIWTTGAR-------VF-KR------FTLP-SQVITVCW-CHI--GDISEALLCVLQIESLTIYNTSGEVISI 132 (1854)
Q Consensus 78 vvWs~G~~-------v~-k~------ft~~-~~v~~A~w-c~f--~~~~e~~lCv~~~~~l~v~~~~Ge~~~~ 132 (1854)
++||.+.. |+ |. =+|+ .||-+|.| |++ |.+.-.++=+.|.-.|+|+|-.||....
T Consensus 15 C~Wsp~~~l~~~sC~i~a~s~~r~wn~~cEL~pv~~~swaCnLilg~p~~Q~LT~~D~~~lsV~C~ege~wr~ 87 (98)
T d2b5ib1 15 CVWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRV 87 (98)
T ss_dssp EEEEC------CCEEEEEEETTSSCCEEEECEECSTTCEEEEEECSSTTCCCCCTTCCEEEEEEECCTTSCEE
T ss_pred EEecCCCCcccceeEEEeecCCccccceeEEEEcCCCceEeeeeecCccccceEeEeEEEEEEEEecCCCeEE
Confidence 58888853 32 22 3466 79999999 777 4444467777888899999999998544
No 4
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]}
Probab=5.57 E-value=2.9e+02 Score=24.93 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=13.0
Q ss_pred eEEecCCCeEEEecc
Q 000210 384 IVVLAPDNALLLYSG 398 (1854)
Q Consensus 384 IlVL~p~g~L~LYsG 398 (1854)
.++|.++|+|+||..
T Consensus 86 ~l~L~ddGNlvly~~ 100 (109)
T d1kj1a_ 86 VLVLQEDGNVVIYGS 100 (109)
T ss_dssp EEEECTTSCEEEECC
T ss_pred EEEEeCCCcEEEECC
Confidence 678999999999953
No 5
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.46 E-value=7.3e+02 Score=21.02 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=41.8
Q ss_pred hhHHhhccCCChHHHHHHHHHHHHhhcCCCCHHHHHHHhcccCCCCCCCccCCcchHhHHHHHHHHHHhhcCCCChhHHH
Q 000210 1033 SDIYKYFYQEHESTAVGLMLGLAASYRGTMQPVISKSLYVHIPARHPSSVELEVPTILQSAALMSVGLLYEGSAHPQTMQ 1112 (1854)
Q Consensus 1033 ~~i~~YL~~~he~tsiGlLLGlsaS~~GTmD~~ltklLsvHi~alLP~~~dl~vs~~vQtaAllglGLLY~GS~hr~m~e 1112 (1854)
..+.+.|..++..+...++..|+- .| +......|.-.+ -+-++.|+.+|+.+||-+ +.....+
T Consensus 25 ~~L~~~l~d~~~~vR~~a~~~L~~--~~--~~~~~~~L~~~l---------~d~~~~VR~~a~~aL~~i----~~~~~~~ 87 (111)
T d1te4a_ 25 EPLLESLSNEDWRIRGAAAWIIGN--FQ--DERAVEPLIKLL---------EDDSGFVRSGAARSLEQI----GGERVRA 87 (111)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGG--GC--SHHHHHHHHHHH---------HHCCTHHHHHHHHHHHHH----CSHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh--cc--hhhhHHHHHhhh---------ccchhHHHHHHHHHHHHh----CccchHH
Confidence 356778888888998888877753 33 333333331111 123567999999999966 3455656
Q ss_pred HHHH
Q 000210 1113 ILLG 1116 (1854)
Q Consensus 1113 ~LL~ 1116 (1854)
.|..
T Consensus 88 ~L~~ 91 (111)
T d1te4a_ 88 AMEK 91 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 6
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=2.4e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.9
Q ss_pred eEEEEEcCCeEEEEeecCCCCcHHHHHHHHH
Q 000210 444 RINVMVNTGQIFRCELRQNPSSSLTNDCITA 474 (1854)
Q Consensus 444 RVTL~~s~G~m~RisLp~~psS~LV~~CL~A 474 (1854)
.|+|+.++|..|.+.-...-.|..++..++-
T Consensus 2 ~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~ 32 (61)
T d1fs1b2 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLED 32 (61)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHH
T ss_pred eEEEEecCCCEEEecHHHHHHhHHHHHHHhc
Confidence 5899999999999999999999999988765
No 7
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}
Probab=4.91 E-value=1.5e+02 Score=27.63 Aligned_cols=15 Identities=47% Similarity=0.957 Sum_probs=13.4
Q ss_pred eEEecCCCeEEEecc
Q 000210 384 IVVLAPDNALLLYSG 398 (1854)
Q Consensus 384 IlVL~p~g~L~LYsG 398 (1854)
.++|++||+|+||.+
T Consensus 101 ~l~Lq~DGnlvlY~~ 115 (120)
T d1dlpa2 101 VFVLQPDRNLAIYGG 115 (120)
T ss_dssp EEEECSSSCEEEECC
T ss_pred EEEECCCCcEEEeCC
Confidence 689999999999964
No 8
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]}
Probab=4.81 E-value=3.4e+02 Score=24.31 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.0
Q ss_pred ceEEecCCCeEEEec
Q 000210 383 DIVVLAPDNALLLYS 397 (1854)
Q Consensus 383 ~IlVL~p~g~L~LYs 397 (1854)
-+++|+.+|+|+||.
T Consensus 84 ~~l~L~ddGNlVly~ 98 (108)
T d1jpca_ 84 YVCILQKDRNVVIYG 98 (108)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEcCCCCEEEeC
Confidence 368899999999994
No 9
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.02 E-value=1.4e+02 Score=25.50 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=14.6
Q ss_pred eeeeccccCCeEEEEEcCCeEEE
Q 000210 434 IIGLADAVEGRINVMVNTGQIFR 456 (1854)
Q Consensus 434 I~~L~D~V~nRVTL~~s~G~m~R 456 (1854)
+.-|+.+++.+|++++.||..++
T Consensus 4 l~~L~~~~g~~V~VeLkng~~~~ 26 (72)
T d1d3ba_ 4 IKVLHEAEGHIVTCETNTGEVYR 26 (72)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEE
T ss_pred hHHHHhcCCCEEEEEECCCeEEE
Confidence 34456666777777777776544
No 10
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.00 E-value=2.6e+02 Score=24.94 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=27.5
Q ss_pred CeEEEEEcCCeEEEEeecCCCCcHHHHHHHHH
Q 000210 443 GRINVMVNTGQIFRCELRQNPSSSLTNDCITA 474 (1854)
Q Consensus 443 nRVTL~~s~G~m~RisLp~~psS~LV~~CL~A 474 (1854)
.-|+|+.++|..|.+..-..-.|..+++.|+.
T Consensus 4 ~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~ 35 (99)
T d1hv2a_ 4 DFVTLVSKDDKEYEISRSAAMISPTLKAMIEG 35 (99)
T ss_dssp SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHS
T ss_pred CeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHc
Confidence 35899999999999998888889988888764
Done!