Query 000211
Match_columns 1852
No_of_seqs 65 out of 67
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 23:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.7 1.6E-18 3.5E-23 173.0 7.7 134 11-144 2-139 (143)
2 KOG4674 Uncharacterized conser 99.7 1.7E-08 3.6E-13 133.3 102.0 456 989-1462 792-1330(1822)
3 KOG0161 Myosin class II heavy 99.7 8E-08 1.7E-12 128.7 92.3 256 1093-1379 1608-1867(1930)
4 KOG0161 Myosin class II heavy 99.6 7E-07 1.5E-11 120.0 99.1 576 992-1638 1242-1887(1930)
5 TIGR00606 rad50 rad50. This fa 99.5 9.5E-07 2E-11 117.1 79.0 539 856-1417 358-933 (1311)
6 KOG4674 Uncharacterized conser 99.5 5.6E-06 1.2E-10 110.4 92.3 634 805-1514 821-1541(1822)
7 TIGR00606 rad50 rad50. This fa 99.4 9.2E-06 2E-10 108.0 80.4 116 459-575 220-339 (1311)
8 COG1196 Smc Chromosome segrega 99.3 6.8E-06 1.5E-10 108.1 64.8 794 819-1687 160-1029(1163)
9 TIGR02168 SMC_prok_B chromosom 99.2 0.0001 2.2E-09 94.4 69.4 82 790-871 226-307 (1179)
10 PRK02224 chromosome segregatio 99.0 5.4E-05 1.2E-09 96.4 55.4 57 1243-1303 468-524 (880)
11 TIGR02169 SMC_prok_A chromosom 99.0 0.00074 1.6E-08 87.3 66.8 30 1620-1649 984-1013(1164)
12 TIGR02168 SMC_prok_B chromosom 98.9 0.0013 2.9E-08 84.6 69.7 24 1612-1635 1004-1027(1179)
13 TIGR02169 SMC_prok_A chromosom 98.9 0.0017 3.8E-08 84.0 73.2 48 1478-1525 955-1006(1164)
14 PRK02224 chromosome segregatio 98.8 0.00037 7.9E-09 89.1 51.0 48 1233-1280 409-456 (880)
15 PRK03918 chromosome segregatio 98.8 0.00064 1.4E-08 86.6 51.5 9 1316-1324 529-537 (880)
16 PF01576 Myosin_tail_1: Myosin 98.5 3.2E-08 7E-13 126.1 0.8 781 456-1438 39-851 (859)
17 PRK03918 chromosome segregatio 98.4 0.029 6.2E-07 72.1 53.9 26 1387-1412 557-582 (880)
18 PF12128 DUF3584: Protein of u 98.3 0.061 1.3E-06 72.4 57.3 60 1063-1122 492-551 (1201)
19 COG1196 Smc Chromosome segrega 98.2 0.076 1.7E-06 71.3 70.4 81 698-778 379-459 (1163)
20 PF10174 Cast: RIM-binding pro 98.1 0.08 1.7E-06 68.6 57.6 340 966-1325 244-603 (775)
21 PF12128 DUF3584: Protein of u 98.1 0.15 3.1E-06 69.0 59.2 528 921-1493 281-842 (1201)
22 PF10174 Cast: RIM-binding pro 98.0 0.14 3E-06 66.5 60.7 143 791-962 12-165 (775)
23 KOG0996 Structural maintenance 98.0 0.2 4.4E-06 66.5 60.5 157 797-984 191-358 (1293)
24 PF05483 SCP-1: Synaptonemal c 97.8 0.22 4.7E-06 63.4 56.0 421 1197-1696 310-764 (786)
25 PF05701 WEMBL: Weak chloropla 97.8 0.19 4.2E-06 62.6 39.4 315 1015-1391 119-440 (522)
26 PF01576 Myosin_tail_1: Myosin 97.7 6.1E-06 1.3E-10 105.9 0.0 624 938-1645 116-773 (859)
27 PF00038 Filament: Intermediat 97.7 0.013 2.8E-07 66.9 25.3 291 1198-1546 5-303 (312)
28 PF07888 CALCOCO1: Calcium bin 97.7 0.077 1.7E-06 66.4 32.8 71 1050-1123 293-363 (546)
29 PF00038 Filament: Intermediat 97.5 0.038 8.2E-07 63.2 26.1 293 745-1133 5-300 (312)
30 KOG0977 Nuclear envelope prote 97.3 0.048 1E-06 68.1 25.3 204 1232-1461 172-392 (546)
31 KOG0978 E3 ubiquitin ligase in 97.3 1.2 2.5E-05 57.7 44.8 293 902-1229 327-642 (698)
32 PRK01156 chromosome segregatio 97.3 1.3 2.9E-05 58.0 52.1 38 1133-1170 344-381 (895)
33 PF05622 HOOK: HOOK protein; 97.2 0.00024 5.2E-09 89.8 4.3 472 1006-1532 176-671 (713)
34 PF07888 CALCOCO1: Calcium bin 97.2 0.43 9.3E-06 60.1 31.3 154 966-1122 184-337 (546)
35 KOG4673 Transcription factor T 97.2 1.5 3.2E-05 56.2 38.2 265 956-1253 452-749 (961)
36 PF05622 HOOK: HOOK protein; 97.1 0.00029 6.3E-09 89.1 3.7 52 741-792 176-227 (713)
37 PF05483 SCP-1: Synaptonemal c 97.1 1.6 3.5E-05 56.0 52.5 367 1034-1430 318-734 (786)
38 PF05701 WEMBL: Weak chloropla 97.1 1.5 3.3E-05 54.9 41.1 318 1024-1410 32-361 (522)
39 KOG0978 E3 ubiquitin ligase in 97.0 2.1 4.5E-05 55.5 47.2 253 949-1204 275-548 (698)
40 PF05557 MAD: Mitotic checkpoi 97.0 0.0027 5.9E-08 80.6 10.4 357 709-1121 61-431 (722)
41 KOG0976 Rho/Rac1-interacting s 97.0 2.3 5E-05 55.3 43.2 302 1092-1466 95-399 (1265)
42 KOG0977 Nuclear envelope prote 96.9 0.28 6.1E-06 61.6 26.4 280 1198-1512 43-363 (546)
43 COG0419 SbcC ATPase involved i 96.5 5.1 0.00011 53.3 56.5 61 1341-1406 583-643 (908)
44 KOG0976 Rho/Rac1-interacting s 96.4 5.3 0.00011 52.2 41.7 210 1238-1493 286-502 (1265)
45 KOG4643 Uncharacterized coiled 96.3 6.9 0.00015 52.4 43.7 197 962-1182 130-331 (1195)
46 PHA02562 46 endonuclease subun 96.3 0.77 1.7E-05 56.5 24.0 224 299-566 170-404 (562)
47 PRK01156 chromosome segregatio 96.2 7.3 0.00016 51.4 59.7 40 1006-1045 343-382 (895)
48 KOG0996 Structural maintenance 96.1 9.9 0.00021 51.7 53.0 59 1356-1414 776-834 (1293)
49 COG0419 SbcC ATPase involved i 96.0 9.3 0.0002 50.9 54.3 50 1159-1213 586-635 (908)
50 PF09730 BicD: Microtubule-ass 95.8 1.9 4.2E-05 56.1 25.3 158 1371-1539 19-206 (717)
51 PRK04778 septation ring format 95.8 8.9 0.00019 48.7 36.9 188 1039-1226 111-335 (569)
52 PF05557 MAD: Mitotic checkpoi 95.6 0.027 5.8E-07 72.0 8.1 66 1238-1307 259-324 (722)
53 KOG4643 Uncharacterized coiled 95.4 16 0.00034 49.3 42.7 211 1156-1384 233-462 (1195)
54 KOG0612 Rho-associated, coiled 95.4 18 0.00039 49.6 45.1 120 954-1090 526-645 (1317)
55 KOG0999 Microtubule-associated 95.3 12 0.00027 47.5 49.9 134 910-1053 32-169 (772)
56 PF15070 GOLGA2L5: Putative go 95.3 14 0.0003 48.0 33.4 148 968-1122 88-235 (617)
57 KOG0250 DNA repair protein RAD 95.0 21 0.00045 48.6 45.5 136 918-1090 327-465 (1074)
58 PRK04778 septation ring format 95.0 15 0.00032 46.8 34.8 346 828-1212 109-508 (569)
59 KOG0971 Microtubule-associated 94.9 14 0.0003 49.3 28.0 148 1153-1307 225-387 (1243)
60 KOG0995 Centromere-associated 94.7 18 0.00039 46.4 32.6 119 1272-1414 402-520 (581)
61 PHA02562 46 endonuclease subun 94.3 5.6 0.00012 49.2 22.5 106 812-931 215-323 (562)
62 PRK11637 AmiB activator; Provi 94.2 11 0.00025 46.0 24.4 74 301-374 45-118 (428)
63 KOG4673 Transcription factor T 94.0 28 0.0006 45.6 40.1 272 975-1278 289-565 (961)
64 PF09730 BicD: Microtubule-ass 93.9 31 0.00067 45.7 43.0 236 1316-1584 370-686 (717)
65 PRK04863 mukB cell division pr 93.5 50 0.0011 47.0 65.9 188 522-735 347-539 (1486)
66 KOG0994 Extracellular matrix g 93.5 42 0.00092 46.1 42.3 110 967-1085 1171-1284(1758)
67 PRK11637 AmiB activator; Provi 93.5 5.9 0.00013 48.3 20.4 45 1385-1429 172-216 (428)
68 PF14662 CCDC155: Coiled-coil 93.5 9.2 0.0002 43.4 19.9 97 1043-1150 18-114 (193)
69 PF06160 EzrA: Septation ring 92.8 38 0.00082 43.4 40.9 336 1040-1395 108-501 (560)
70 KOG0980 Actin-binding protein 92.3 13 0.00029 49.3 21.7 149 459-620 462-614 (980)
71 KOG0946 ER-Golgi vesicle-tethe 92.0 8.7 0.00019 50.6 19.5 91 1195-1285 679-772 (970)
72 PRK04863 mukB cell division pr 92.0 77 0.0017 45.3 57.2 196 1092-1296 452-678 (1486)
73 PF15070 GOLGA2L5: Putative go 91.4 58 0.0013 42.6 31.5 225 987-1225 79-310 (617)
74 KOG0946 ER-Golgi vesicle-tethe 91.0 56 0.0012 43.7 24.8 71 1425-1502 848-918 (970)
75 PF13514 AAA_27: AAA domain 90.7 84 0.0018 43.3 60.8 101 842-953 740-840 (1111)
76 PF10473 CENP-F_leu_zip: Leuci 90.6 20 0.00044 38.9 17.8 123 463-592 3-138 (140)
77 PF09726 Macoilin: Transmembra 89.7 70 0.0015 42.5 24.8 202 826-1130 455-656 (697)
78 PF09789 DUF2353: Uncharacteri 89.0 27 0.00058 42.4 18.9 193 465-698 11-228 (319)
79 KOG0971 Microtubule-associated 88.8 1.1E+02 0.0023 41.7 37.1 43 697-739 513-555 (1243)
80 PF09789 DUF2353: Uncharacteri 87.9 75 0.0016 38.8 23.2 266 1014-1305 4-317 (319)
81 PF08317 Spc7: Spc7 kinetochor 87.8 16 0.00034 43.6 16.1 171 1130-1303 114-291 (325)
82 TIGR03185 DNA_S_dndD DNA sulfu 87.5 1E+02 0.0022 40.1 24.3 45 1590-1634 372-417 (650)
83 PF08317 Spc7: Spc7 kinetochor 87.4 26 0.00057 41.8 17.6 133 459-595 152-291 (325)
84 KOG0612 Rho-associated, coiled 87.2 1.5E+02 0.0033 41.6 46.3 66 1161-1226 583-648 (1317)
85 cd08389 C2A_Synaptotagmin-14_1 87.0 1.2 2.6E-05 45.4 5.7 94 24-125 25-123 (124)
86 PF14662 CCDC155: Coiled-coil 86.6 67 0.0014 36.9 20.4 53 1063-1115 3-55 (193)
87 PF04849 HAP1_N: HAP1 N-termin 86.5 36 0.00079 41.1 17.9 27 1069-1095 161-187 (306)
88 KOG0963 Transcription factor/C 85.7 1.3E+02 0.0029 39.5 28.6 292 1197-1525 29-362 (629)
89 PF05667 DUF812: Protein of un 85.7 1E+02 0.0023 40.2 22.6 144 1374-1541 428-590 (594)
90 TIGR01005 eps_transp_fam exopo 85.2 30 0.00065 45.1 18.0 208 1331-1540 174-387 (754)
91 PF09787 Golgin_A5: Golgin sub 85.1 1.1E+02 0.0023 39.1 22.0 158 991-1148 176-354 (511)
92 smart00787 Spc7 Spc7 kinetocho 84.9 72 0.0016 38.6 19.5 180 906-1091 65-262 (312)
93 PRK09039 hypothetical protein; 84.8 33 0.00072 41.5 16.9 125 456-589 53-199 (343)
94 KOG0995 Centromere-associated 84.8 1.4E+02 0.003 39.0 30.9 194 767-1012 230-424 (581)
95 PF04849 HAP1_N: HAP1 N-termin 84.4 53 0.0012 39.8 18.0 201 1176-1412 55-260 (306)
96 KOG4593 Mitotic checkpoint pro 84.0 1.6E+02 0.0035 39.2 43.8 279 1245-1557 287-586 (716)
97 PF13851 GAS: Growth-arrest sp 83.3 16 0.00035 41.2 12.6 164 709-881 27-200 (201)
98 PF10473 CENP-F_leu_zip: Leuci 82.6 47 0.001 36.3 15.2 115 1004-1121 5-119 (140)
99 KOG0250 DNA repair protein RAD 82.6 2.2E+02 0.0048 39.6 25.0 127 1181-1310 296-423 (1074)
100 TIGR03007 pepcterm_ChnLen poly 82.5 39 0.00084 41.8 16.6 93 1342-1440 166-273 (498)
101 PF09726 Macoilin: Transmembra 82.3 1.9E+02 0.004 38.7 23.1 228 967-1213 418-659 (697)
102 PF00261 Tropomyosin: Tropomyo 81.9 1E+02 0.0023 35.4 20.8 55 1053-1107 21-75 (237)
103 PF12718 Tropomyosin_1: Tropom 81.4 26 0.00057 37.8 12.8 114 1242-1369 27-140 (143)
104 KOG0962 DNA repair protein RAD 81.2 2.7E+02 0.0058 39.6 71.5 109 459-568 219-331 (1294)
105 KOG4593 Mitotic checkpoint pro 81.1 2.1E+02 0.0045 38.3 47.0 526 751-1362 53-618 (716)
106 KOG0994 Extracellular matrix g 80.2 2.7E+02 0.006 39.2 41.0 241 937-1187 1196-1503(1758)
107 PF09787 Golgin_A5: Golgin sub 80.1 1.8E+02 0.004 37.1 25.5 29 1259-1287 387-415 (511)
108 PF05010 TACC: Transforming ac 79.2 1.3E+02 0.0028 34.8 18.2 83 1009-1094 23-109 (207)
109 PF07426 Dynactin_p22: Dynacti 79.1 18 0.0004 40.2 11.1 152 707-881 3-162 (174)
110 TIGR00634 recN DNA repair prot 78.1 1.3E+02 0.0027 38.7 19.4 83 1223-1305 281-363 (563)
111 PRK06568 F0F1 ATP synthase sub 77.0 92 0.002 34.4 15.4 109 458-603 30-138 (154)
112 PF12718 Tropomyosin_1: Tropom 76.7 1.2E+02 0.0026 33.0 16.2 131 1256-1400 6-136 (143)
113 PF11559 ADIP: Afadin- and alp 76.5 41 0.00089 35.8 12.4 113 1343-1455 37-149 (151)
114 KOG0980 Actin-binding protein 76.2 3.1E+02 0.0068 37.6 24.2 91 1359-1449 439-536 (980)
115 PF15254 CCDC14: Coiled-coil d 75.9 1.9E+02 0.0041 39.1 19.8 119 1175-1307 429-555 (861)
116 PF15397 DUF4618: Domain of un 75.6 1.9E+02 0.004 34.7 19.5 33 1038-1070 11-43 (258)
117 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.8 91 0.002 33.0 14.3 105 459-563 6-113 (132)
118 PRK09039 hypothetical protein; 74.5 1.3E+02 0.0029 36.6 17.4 140 1335-1486 35-184 (343)
119 KOG1853 LIS1-interacting prote 74.3 30 0.00064 41.0 11.3 129 1397-1525 49-191 (333)
120 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.3 51 0.0011 34.9 12.0 114 1392-1511 2-118 (132)
121 KOG0933 Structural maintenance 72.9 4E+02 0.0086 37.3 50.1 126 1331-1478 735-861 (1174)
122 PF05010 TACC: Transforming ac 72.1 2E+02 0.0043 33.4 19.2 86 1339-1424 120-206 (207)
123 PF05911 DUF869: Plant protein 71.8 3.8E+02 0.0081 36.5 44.9 41 1152-1192 673-713 (769)
124 KOG1029 Endocytic adaptor prot 70.9 1.5E+02 0.0033 39.9 17.2 209 1343-1563 415-634 (1118)
125 cd04043 C2_Munc13_fungal C2 do 70.3 15 0.00033 36.8 7.2 107 22-140 8-121 (126)
126 PF00261 Tropomyosin: Tropomyo 70.1 2.1E+02 0.0046 33.0 21.8 216 1065-1312 5-221 (237)
127 PRK10929 putative mechanosensi 69.8 4.8E+02 0.01 36.9 32.5 362 1097-1516 24-422 (1109)
128 cd04052 C2B_Tricalbin-like C2 68.5 4.4 9.6E-05 40.3 3.0 52 88-140 57-109 (111)
129 PF14197 Cep57_CLD_2: Centroso 68.4 25 0.00053 34.2 7.7 64 309-372 4-67 (69)
130 cd08682 C2_Rab11-FIP_classI C2 67.5 5.7 0.00012 40.1 3.6 109 23-138 7-126 (126)
131 TIGR03185 DNA_S_dndD DNA sulfu 67.0 4E+02 0.0086 35.0 29.8 25 704-728 393-417 (650)
132 PF15066 CAGE1: Cancer-associa 66.8 2.1E+02 0.0045 36.8 16.7 143 1008-1150 330-504 (527)
133 cd08373 C2A_Ferlin C2 domain f 66.2 9.4 0.0002 38.6 4.8 51 96-147 70-123 (127)
134 PF07106 TBPIP: Tat binding pr 66.1 13 0.00027 40.3 6.0 78 305-387 74-151 (169)
135 COG1340 Uncharacterized archae 64.8 3.3E+02 0.0072 33.3 22.5 42 1209-1250 56-97 (294)
136 PF08614 ATG16: Autophagy prot 64.3 34 0.00073 38.1 9.0 122 997-1135 69-190 (194)
137 PF14915 CCDC144C: CCDC144C pr 63.9 3.5E+02 0.0076 33.2 25.8 282 826-1147 1-294 (305)
138 PF07798 DUF1640: Protein of u 63.2 54 0.0012 36.1 10.2 78 1444-1521 21-103 (177)
139 PRK10869 recombination and rep 62.2 2.7E+02 0.0058 36.1 17.3 64 1242-1305 295-358 (553)
140 KOG2008 BTK-associated SH3-dom 62.1 3.1E+02 0.0067 33.9 16.4 145 1291-1459 48-203 (426)
141 cd08376 C2B_MCTP_PRT C2 domain 61.9 13 0.00028 36.7 4.8 43 94-139 72-114 (116)
142 COG3883 Uncharacterized protei 61.7 3.6E+02 0.0078 32.6 17.1 53 1442-1494 165-217 (265)
143 PF15397 DUF4618: Domain of un 61.2 3.6E+02 0.0078 32.4 18.9 204 1115-1403 18-224 (258)
144 cd08391 C2A_C2C_Synaptotagmin_ 60.2 14 0.0003 36.5 4.6 40 97-138 81-120 (121)
145 PRK11281 hypothetical protein; 60.0 7.1E+02 0.015 35.4 28.3 73 1178-1250 239-320 (1113)
146 KOG0804 Cytoplasmic Zn-finger 59.8 82 0.0018 40.0 11.8 12 1456-1467 438-449 (493)
147 KOG0979 Structural maintenance 59.8 6.8E+02 0.015 35.2 23.7 137 1131-1268 695-846 (1072)
148 PRK10884 SH3 domain-containing 59.5 37 0.00081 38.8 8.4 75 299-373 89-167 (206)
149 KOG1937 Uncharacterized conser 59.3 5.1E+02 0.011 33.5 26.7 72 1383-1458 386-457 (521)
150 PF06818 Fez1: Fez1; InterPro 59.2 1.1E+02 0.0025 35.3 12.0 63 1285-1350 7-69 (202)
151 PF11559 ADIP: Afadin- and alp 58.9 2.6E+02 0.0055 30.0 16.2 108 456-574 31-138 (151)
152 TIGR01005 eps_transp_fam exopo 58.9 4.7E+02 0.01 34.7 19.0 91 461-551 235-344 (754)
153 COG1579 Zn-ribbon protein, pos 57.2 4E+02 0.0087 31.7 16.4 45 1442-1486 92-136 (239)
154 KOG2991 Splicing regulator [RN 57.1 4.1E+02 0.009 32.2 16.0 64 345-408 129-204 (330)
155 PF10212 TTKRSYEDQ: Predicted 57.1 76 0.0016 40.9 11.1 103 1338-1468 414-516 (518)
156 PF10186 Atg14: UV radiation r 56.7 2.3E+02 0.005 32.4 14.0 56 1003-1058 21-81 (302)
157 cd04044 C2A_Tricalbin-like C2 56.4 19 0.0004 35.7 4.9 77 56-140 45-123 (124)
158 PF10267 Tmemb_cc2: Predicted 56.1 89 0.0019 39.1 11.3 79 308-393 210-288 (395)
159 PF04012 PspA_IM30: PspA/IM30 55.9 3.4E+02 0.0074 30.6 15.0 96 1391-1486 35-138 (221)
160 cd04033 C2_NEDD4_NEDD4L C2 dom 55.1 20 0.00044 36.2 5.0 45 96-140 80-133 (133)
161 cd08388 C2A_Synaptotagmin-4-11 53.7 15 0.00033 37.8 3.9 32 94-125 95-127 (128)
162 PF04156 IncA: IncA protein; 53.3 2.1E+02 0.0045 31.4 12.5 74 1340-1413 77-150 (191)
163 PRK10869 recombination and rep 53.0 6.4E+02 0.014 32.8 18.7 70 952-1028 281-350 (553)
164 PF05667 DUF812: Protein of un 52.1 7.1E+02 0.015 33.1 25.2 64 1043-1106 422-485 (594)
165 PF02183 HALZ: Homeobox associ 51.8 30 0.00066 31.3 4.9 42 488-540 2-43 (45)
166 KOG4687 Uncharacterized coiled 51.4 3.7E+02 0.0081 32.7 14.6 140 465-609 32-189 (389)
167 COG1579 Zn-ribbon protein, pos 51.0 5E+02 0.011 31.0 15.6 28 1249-1276 148-175 (239)
168 KOG0979 Structural maintenance 50.1 9.4E+02 0.02 33.9 20.3 112 1338-1453 774-898 (1072)
169 PF12325 TMF_TATA_bd: TATA ele 50.1 63 0.0014 34.5 7.7 87 1233-1326 20-110 (120)
170 KOG0999 Microtubule-associated 49.8 7.6E+02 0.017 32.8 33.8 306 1062-1399 37-373 (772)
171 PF11932 DUF3450: Protein of u 49.3 2.4E+02 0.0051 32.7 12.7 29 522-550 93-122 (251)
172 PRK11546 zraP zinc resistance 48.6 86 0.0019 34.5 8.6 92 1017-1117 3-110 (143)
173 PF13851 GAS: Growth-arrest sp 48.2 4.1E+02 0.0089 30.4 14.1 138 800-971 13-150 (201)
174 PF13949 ALIX_LYPXL_bnd: ALIX 47.6 5.1E+02 0.011 30.1 21.2 232 793-1033 26-286 (296)
175 PF09304 Cortex-I_coil: Cortex 47.3 1.4E+02 0.0031 31.7 9.5 72 1203-1274 4-75 (107)
176 KOG2991 Splicing regulator [RN 47.1 6.1E+02 0.013 30.9 19.5 181 495-729 119-312 (330)
177 PF03999 MAP65_ASE1: Microtubu 47.0 6.4 0.00014 50.5 0.0 186 835-1040 81-278 (619)
178 PF10212 TTKRSYEDQ: Predicted 47.0 3E+02 0.0064 35.9 13.9 352 704-1100 78-494 (518)
179 cd08521 C2A_SLP C2 domain firs 46.0 28 0.0006 34.6 4.3 28 85-112 83-112 (123)
180 PF00769 ERM: Ezrin/radixin/mo 45.4 4.2E+02 0.009 31.2 13.9 31 474-504 2-32 (246)
181 cd08690 C2_Freud-1 C2 domain f 45.2 47 0.001 36.4 6.1 61 84-145 77-142 (155)
182 KOG0239 Kinesin (KAR3 subfamil 45.2 4.1E+02 0.0089 35.6 15.3 95 1289-1388 221-315 (670)
183 cd04014 C2_PKC_epsilon C2 doma 45.0 25 0.00054 35.9 3.8 55 84-141 73-130 (132)
184 PF06008 Laminin_I: Laminin Do 44.8 5.7E+02 0.012 29.9 20.3 122 1061-1196 17-143 (264)
185 cd08393 C2A_SLP-1_2 C2 domain 44.7 47 0.001 34.1 5.7 42 82-124 81-124 (125)
186 KOG4460 Nuclear pore complex, 44.6 2.3E+02 0.0049 37.1 12.3 136 458-597 590-726 (741)
187 KOG1937 Uncharacterized conser 44.2 8.5E+02 0.018 31.7 19.6 35 1241-1275 453-487 (521)
188 smart00787 Spc7 Spc7 kinetocho 44.2 6.9E+02 0.015 30.6 18.1 134 461-595 142-286 (312)
189 PRK10884 SH3 domain-containing 44.0 89 0.0019 35.9 8.2 28 993-1020 84-111 (206)
190 cd08375 C2_Intersectin C2 doma 43.6 49 0.0011 34.7 5.8 106 22-137 22-133 (136)
191 PF04156 IncA: IncA protein; 43.2 1.9E+02 0.004 31.8 10.3 12 1243-1254 172-183 (191)
192 cd04042 C2A_MCTP_PRT C2 domain 43.0 34 0.00073 34.4 4.4 45 94-139 72-119 (121)
193 PF09325 Vps5: Vps5 C terminal 42.9 4.1E+02 0.0088 29.7 13.0 108 837-951 23-151 (236)
194 cd08680 C2_Kibra C2 domain fou 42.6 17 0.00036 37.9 2.2 71 37-115 41-115 (124)
195 PF08614 ATG16: Autophagy prot 42.5 1.7E+02 0.0037 32.7 10.0 88 460-547 92-182 (194)
196 TIGR03752 conj_TIGR03752 integ 42.4 66 0.0014 41.0 7.5 66 1387-1455 60-125 (472)
197 cd08685 C2_RGS-like C2 domain 42.1 20 0.00043 36.7 2.6 69 37-113 38-109 (119)
198 TIGR03007 pepcterm_ChnLen poly 41.8 8.1E+02 0.017 30.8 17.3 44 1037-1080 251-294 (498)
199 PF09728 Taxilin: Myosin-like 41.8 7.3E+02 0.016 30.3 24.8 174 1173-1362 107-304 (309)
200 TIGR03017 EpsF chain length de 41.8 7.6E+02 0.016 30.4 17.5 27 1342-1368 176-202 (444)
201 PF04111 APG6: Autophagy prote 40.8 3.5E+02 0.0077 32.8 12.9 42 461-502 41-82 (314)
202 PRK10361 DNA recombination pro 40.6 7.2E+02 0.016 32.3 15.9 66 918-983 57-122 (475)
203 cd04035 C2A_Rabphilin_Doc2 C2 40.5 43 0.00094 33.6 4.7 23 92-114 92-114 (123)
204 cd04051 C2_SRC2_like C2 domain 40.0 25 0.00053 35.4 2.9 73 58-134 44-124 (125)
205 PF04111 APG6: Autophagy prote 39.9 1.3E+02 0.0028 36.4 9.1 35 1044-1078 54-88 (314)
206 KOG4360 Uncharacterized coiled 39.8 2.9E+02 0.0062 36.0 12.1 93 1070-1162 161-264 (596)
207 KOG1899 LAR transmembrane tyro 38.6 3.6E+02 0.0079 35.9 12.9 146 1245-1420 155-311 (861)
208 PF15066 CAGE1: Cancer-associa 38.6 1E+03 0.022 31.1 19.4 129 1291-1424 341-473 (527)
209 PF08312 cwf21: cwf21 domain; 38.5 81 0.0018 28.9 5.5 39 1469-1517 6-44 (46)
210 PF06160 EzrA: Septation ring 38.1 1E+03 0.023 31.0 39.5 51 1067-1117 277-327 (560)
211 PLN03229 acetyl-coenzyme A car 38.1 1.1E+03 0.024 32.4 17.3 73 528-600 647-732 (762)
212 PF09304 Cortex-I_coil: Cortex 38.1 2.7E+02 0.0058 29.8 9.8 89 1363-1451 14-103 (107)
213 PF10481 CENP-F_N: Cenp-F N-te 38.1 2.7E+02 0.0059 33.8 11.0 44 455-499 11-54 (307)
214 PF07111 HCR: Alpha helical co 38.0 1.2E+03 0.027 31.8 45.7 128 1123-1256 206-351 (739)
215 cd04020 C2B_SLP_1-2-3-4 C2 dom 37.8 76 0.0016 34.4 6.3 86 22-113 34-126 (162)
216 PF14197 Cep57_CLD_2: Centroso 37.4 79 0.0017 30.9 5.6 47 1035-1081 21-67 (69)
217 KOG1853 LIS1-interacting prote 37.2 7.2E+02 0.016 30.2 14.0 123 1073-1212 25-148 (333)
218 KOG1899 LAR transmembrane tyro 37.2 6.4E+02 0.014 33.9 14.6 152 1176-1358 135-309 (861)
219 cd04040 C2D_Tricalbin-like C2 36.9 34 0.00073 33.8 3.2 33 95-128 73-105 (115)
220 COG4942 Membrane-bound metallo 36.0 1.1E+03 0.023 30.5 21.7 73 1036-1112 38-110 (420)
221 cd08681 C2_fungal_Inn1p-like C 35.8 34 0.00074 34.0 3.1 70 60-138 46-117 (118)
222 PF06005 DUF904: Protein of un 35.7 3E+02 0.0064 27.3 9.2 44 459-502 7-50 (72)
223 PF03954 Lectin_N: Hepatic lec 35.7 43 0.00094 36.6 4.0 69 1232-1302 58-130 (138)
224 PF15619 Lebercilin: Ciliary p 35.3 7.5E+02 0.016 28.5 16.4 169 998-1169 15-188 (194)
225 cd04031 C2A_RIM1alpha C2 domai 35.3 49 0.0011 33.0 4.1 17 94-110 96-112 (125)
226 PF13870 DUF4201: Domain of un 35.0 6.5E+02 0.014 27.7 13.7 77 1230-1306 92-170 (177)
227 COG4477 EzrA Negative regulato 34.9 1.2E+03 0.027 30.9 28.2 290 1191-1509 154-465 (570)
228 cd04029 C2A_SLP-4_5 C2 domain 34.5 30 0.00065 35.5 2.6 79 37-125 43-125 (125)
229 PLN02939 transferase, transfer 34.4 1.4E+03 0.03 32.3 17.9 29 1252-1280 158-186 (977)
230 COG1730 GIM5 Predicted prefold 34.2 1.6E+02 0.0034 32.6 7.9 47 1003-1049 7-53 (145)
231 PF10186 Atg14: UV radiation r 33.7 7.8E+02 0.017 28.2 16.7 31 461-491 18-48 (302)
232 KOG0992 Uncharacterized conser 33.5 1.3E+03 0.028 30.6 30.1 195 983-1186 48-258 (613)
233 cd04036 C2_cPLA2 C2 domain pre 33.3 48 0.001 33.2 3.7 39 97-137 77-115 (119)
234 cd08400 C2_Ras_p21A1 C2 domain 32.2 1.1E+02 0.0023 31.5 6.0 106 22-140 11-123 (126)
235 PF08581 Tup_N: Tup N-terminal 32.0 1.7E+02 0.0036 29.5 7.0 64 1283-1356 13-76 (79)
236 cd04024 C2A_Synaptotagmin-like 31.8 41 0.0009 33.6 3.0 32 96-127 77-110 (128)
237 PF06785 UPF0242: Uncharacteri 31.8 4.3E+02 0.0093 33.0 11.5 78 1008-1085 98-186 (401)
238 COG1842 PspA Phage shock prote 31.7 2.8E+02 0.006 32.5 9.7 99 1393-1491 38-137 (225)
239 cd04022 C2A_MCTP_PRT_plant C2 31.5 49 0.0011 33.6 3.5 42 97-139 79-125 (127)
240 cd04030 C2C_KIAA1228 C2 domain 31.4 90 0.0019 31.4 5.3 28 96-124 99-126 (127)
241 PF06818 Fez1: Fez1; InterPro 31.3 9.2E+02 0.02 28.3 13.7 146 1221-1374 16-200 (202)
242 PF10211 Ax_dynein_light: Axon 31.2 2.6E+02 0.0056 31.7 9.2 50 311-364 34-85 (189)
243 COG3074 Uncharacterized protei 30.9 1.9E+02 0.004 29.1 6.9 46 343-393 29-76 (79)
244 PF14992 TMCO5: TMCO5 family 30.9 1.9E+02 0.0041 35.0 8.4 149 767-933 6-170 (280)
245 cd08401 C2A_RasA2_RasA3 C2 dom 30.8 46 0.00099 34.1 3.1 52 85-138 62-120 (121)
246 PF06476 DUF1090: Protein of u 30.8 1.1E+02 0.0025 32.3 6.0 69 1569-1637 20-92 (115)
247 COG5185 HEC1 Protein involved 30.8 1.4E+03 0.03 30.2 27.4 151 1011-1176 273-424 (622)
248 PF10168 Nup88: Nuclear pore c 30.8 1.2E+03 0.027 31.6 16.4 78 1001-1088 578-659 (717)
249 TIGR02338 gimC_beta prefoldin, 30.6 3.1E+02 0.0068 28.3 9.0 92 1003-1101 11-107 (110)
250 KOG4302 Microtubule-associated 30.5 1.5E+03 0.033 30.7 18.8 149 1194-1348 54-214 (660)
251 cd04015 C2_plant_PLD C2 domain 30.4 59 0.0013 35.0 4.0 42 97-139 111-157 (158)
252 TIGR01843 type_I_hlyD type I s 30.2 1E+03 0.022 28.5 16.9 180 1281-1467 74-274 (423)
253 cd04019 C2C_MCTP_PRT_plant C2 29.6 73 0.0016 34.2 4.5 48 94-141 73-133 (150)
254 PF10168 Nup88: Nuclear pore c 29.4 8.6E+02 0.019 33.0 14.7 91 459-553 568-658 (717)
255 COG0497 RecN ATPase involved i 29.3 1.5E+03 0.033 30.2 16.4 191 1077-1304 159-358 (557)
256 PF13514 AAA_27: AAA domain 29.3 1.8E+03 0.039 31.1 68.8 102 770-871 223-326 (1111)
257 PF04645 DUF603: Protein of un 29.3 1E+02 0.0022 35.0 5.6 64 309-372 60-125 (181)
258 cd04026 C2_PKC_alpha_gamma C2 29.2 44 0.00096 33.9 2.7 103 22-134 20-129 (131)
259 PRK13169 DNA replication intia 28.6 58 0.0013 34.4 3.4 38 998-1052 4-41 (110)
260 KOG0018 Structural maintenance 28.4 2E+03 0.043 31.3 48.3 110 898-1007 165-274 (1141)
261 PF06156 DUF972: Protein of un 28.2 59 0.0013 34.0 3.4 38 998-1052 4-41 (107)
262 cd08390 C2A_Synaptotagmin-15-1 27.5 1.2E+02 0.0025 30.4 5.3 31 94-125 92-122 (123)
263 PF03999 MAP65_ASE1: Microtubu 27.5 1.4E+02 0.0031 38.8 7.3 291 967-1277 105-408 (619)
264 PF09738 DUF2051: Double stran 27.4 3.5E+02 0.0076 33.1 9.9 75 301-375 82-163 (302)
265 PF12325 TMF_TATA_bd: TATA ele 27.4 3.5E+02 0.0076 29.1 8.8 67 1015-1081 43-116 (120)
266 COG4942 Membrane-bound metallo 27.0 1.5E+03 0.032 29.3 21.0 119 1096-1214 112-244 (420)
267 PF11932 DUF3450: Protein of u 26.8 4.6E+02 0.0099 30.4 10.4 68 1065-1132 46-116 (251)
268 PLN03188 kinesin-12 family pro 26.6 2.2E+03 0.049 31.4 23.0 79 1261-1339 1058-1146(1320)
269 KOG0963 Transcription factor/C 26.6 1.7E+03 0.038 30.0 34.0 305 1184-1517 74-423 (629)
270 cd04048 C2A_Copine C2 domain f 26.5 1.3E+02 0.0029 30.3 5.5 97 18-124 3-112 (120)
271 PF05082 Rop-like: Rop-like; 26.3 1.6E+02 0.0036 29.0 5.7 63 310-372 2-64 (66)
272 PF08581 Tup_N: Tup N-terminal 26.2 5E+02 0.011 26.3 9.1 40 459-498 7-46 (79)
273 KOG4807 F-actin binding protei 26.1 1.5E+03 0.033 29.1 21.2 234 919-1192 296-559 (593)
274 smart00338 BRLZ basic region l 26.1 1.6E+02 0.0035 27.5 5.6 40 462-501 25-64 (65)
275 PF09755 DUF2046: Uncharacteri 25.9 1.4E+03 0.03 28.6 25.7 242 1106-1404 23-286 (310)
276 PF04124 Dor1: Dor1-like famil 25.7 1.3E+03 0.028 28.1 17.1 156 1028-1206 16-173 (338)
277 PRK09841 cryptic autophosphory 25.5 9.8E+02 0.021 32.1 14.3 51 1331-1381 247-297 (726)
278 cd08386 C2A_Synaptotagmin-7 C2 25.1 90 0.002 31.3 4.0 29 95-124 95-123 (125)
279 PF07798 DUF1640: Protein of u 25.0 9.9E+02 0.021 26.6 14.8 29 1252-1280 39-67 (177)
280 cd08691 C2_NEDL1-like C2 domai 25.0 1.8E+02 0.0039 31.1 6.3 28 98-125 91-120 (137)
281 PLN02939 transferase, transfer 24.7 2.2E+03 0.048 30.6 21.4 142 892-1058 127-275 (977)
282 cd08387 C2A_Synaptotagmin-8 C2 24.7 50 0.0011 33.3 2.1 42 83-125 80-123 (124)
283 PF00015 MCPsignal: Methyl-acc 24.7 9.1E+02 0.02 26.1 17.9 95 933-1028 7-101 (213)
284 PF10234 Cluap1: Clusterin-ass 24.3 7.7E+02 0.017 29.9 11.7 91 459-567 172-262 (267)
285 PF04871 Uso1_p115_C: Uso1 / p 24.3 7.2E+02 0.016 27.1 10.6 41 1454-1494 78-118 (136)
286 PF14992 TMCO5: TMCO5 family 24.2 7.8E+02 0.017 30.1 11.8 142 957-1104 22-185 (280)
287 COG3206 GumC Uncharacterized p 24.2 1.5E+03 0.033 28.5 18.8 203 1331-1540 175-384 (458)
288 PF03962 Mnd1: Mnd1 family; I 24.0 1.9E+02 0.0041 32.8 6.6 78 309-391 68-145 (188)
289 KOG3156 Uncharacterized membra 23.8 3.1E+02 0.0067 32.3 8.2 80 1446-1525 66-151 (220)
290 PF06005 DUF904: Protein of un 23.7 2.4E+02 0.0051 28.0 6.3 23 350-372 30-52 (72)
291 TIGR01000 bacteriocin_acc bact 23.6 1.3E+03 0.029 29.0 14.2 96 947-1044 166-261 (457)
292 KOG2264 Exostosin EXT1L [Signa 23.4 1.5E+02 0.0032 38.7 6.1 51 457-507 94-144 (907)
293 PRK00409 recombination and DNA 23.4 1E+03 0.023 32.4 14.1 40 65-106 150-189 (782)
294 PRK10698 phage shock protein P 23.1 6.3E+02 0.014 29.4 10.6 51 1390-1440 35-85 (222)
295 PRK03947 prefoldin subunit alp 23.1 2.6E+02 0.0057 29.6 7.1 44 1004-1047 8-51 (140)
296 KOG0249 LAR-interacting protei 22.8 1.4E+03 0.03 31.5 14.2 137 958-1101 110-256 (916)
297 PF09728 Taxilin: Myosin-like 22.7 1.5E+03 0.032 27.8 29.7 28 1174-1201 203-230 (309)
298 KOG4403 Cell surface glycoprot 22.5 1.2E+03 0.026 30.3 13.1 152 1242-1418 258-422 (575)
299 cd08392 C2A_SLP-3 C2 domain fi 22.3 51 0.0011 34.3 1.8 68 37-112 43-113 (128)
300 TIGR03017 EpsF chain length de 22.2 1.5E+03 0.033 27.8 18.1 41 1038-1078 259-299 (444)
301 PF05266 DUF724: Protein of un 22.0 3.3E+02 0.0072 31.1 8.0 70 303-372 110-179 (190)
302 cd08675 C2B_RasGAP C2 domain s 21.9 1.5E+02 0.0032 31.2 5.0 69 58-127 44-121 (137)
303 PF07058 Myosin_HC-like: Myosi 21.8 1.5E+03 0.033 28.3 13.5 61 1214-1275 101-161 (351)
304 cd08382 C2_Smurf-like C2 domai 21.6 63 0.0014 32.9 2.2 74 45-125 31-104 (123)
305 KOG0804 Cytoplasmic Zn-finger 21.4 6.9E+02 0.015 32.4 11.0 34 1479-1512 415-449 (493)
306 COG2433 Uncharacterized conser 21.1 4.1E+02 0.0089 35.3 9.3 60 301-362 343-402 (652)
307 TIGR01069 mutS2 MutS2 family p 20.7 1.1E+03 0.023 32.3 13.4 53 66-127 146-198 (771)
308 cd07647 F-BAR_PSTPIP The F-BAR 20.6 1.4E+03 0.029 26.6 18.7 132 455-586 52-184 (239)
309 PF04645 DUF603: Protein of un 20.5 4.4E+02 0.0095 30.3 8.3 51 319-371 107-157 (181)
310 PF10211 Ax_dynein_light: Axon 20.3 1.3E+03 0.028 26.3 14.1 26 1342-1367 64-89 (189)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.75 E-value=1.6e-18 Score=173.05 Aligned_cols=134 Identities=32% Similarity=0.503 Sum_probs=124.4
Q ss_pred ccceeEEEEEeeeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhh
Q 000211 11 KTKVKVVFRLQFHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFV 90 (1852)
Q Consensus 11 K~k~K~vFklqFhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfV 90 (1852)
|.+.|+.|.|.+|..+..+..|..++|++-.++.+++.+.|.++.|.+|.|.|++++..++++..|.+++.|++|.|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 67899999999888876667999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC--CCcccccceeecchhhccccc-CCeeeeecCCCC-CCCCeEEEEEeeeccCC
Q 000211 91 VAMG--SSRSSILGEATINLADYADAS-KPSTVLLPLHGG-DSGTILHVTVQLLTSKT 144 (1852)
Q Consensus 91 Vs~G--SsksgiLGEasinlAdY~~a~-kp~~VSLPLk~c-nsGtvLHVtIQ~l~~~t 144 (1852)
|-.+ +.+...||.++||||+|++.. +|.++.+||+.| .++|+|+|+|++..-++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 9775 666689999999999999996 999999999999 99999999999996543
No 2
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.74 E-value=1.7e-08 Score=133.30 Aligned_cols=456 Identities=21% Similarity=0.277 Sum_probs=245.9
Q ss_pred HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhh----hhhhHHHHHHHHHHHHHHhccchhHHH
Q 000211 989 VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDR----SKQTISELTEENRALMVALQDKSEESV 1064 (1852)
Q Consensus 989 ~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~----tK~~~~el~~En~al~~slqdK~ees~ 1064 (1852)
.++-|+..-..+-++++.|+.+|+.+.++++.- ..++-.++..+++ ++-.+.++..++.-+..++-.+..+-.
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~---~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~ 868 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQEK---SSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIA 868 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667788899999999998885544 4444555555554 455677788888888888888888888
Q ss_pred HHHHHHHhHHHhhHhhhHHHHHHHH-------------hhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHh
Q 000211 1065 KLALEVDSFKQSFQSLHDELLVERS-------------LRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAV 1128 (1852)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aers-------------l~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~ 1128 (1852)
++..++..|.+-+++.....+..-+ ++ ...+.+++|-.+|..-..++..+-....-. +.++-.
T Consensus 869 ~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr-~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks 947 (1822)
T KOG4674|consen 869 KLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLR-KELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKS 947 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776555443332 11 122223333333322222222222111111 111111
Q ss_pred hhHhhhhhHHhhhhhhHHHHHHHHHH-------HhHhhhhhhhhhhhhccccchHH-HHhhhhhhHHHHHHHHHhhhhhh
Q 000211 1129 LTKENQDLMVSLQNKSEEAAKLAVEL-------DSVRNSLQSVHDELHGERSLSDE-LKSRAIDISSQLNEKQQQLIDFD 1200 (1852)
Q Consensus 1129 dlEea~sl~~~Lls~sEe~~k~A~t~-------~q~e~~lqeL~~eL~~~~~~~e~-LQsk~~Dves~Ln~~~~~e~e~~ 1200 (1852)
.+++-. ......+....-.+ .-+++.+..|.+++.-.....+. +-..--.+.++-|+........-
T Consensus 948 ~lde~~------~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 948 ELDETR------LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAAS 1021 (1822)
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111111 11111111111122 22444444555444333333222 33333344455555555555556
Q ss_pred hhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhcc---ccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhh
Q 000211 1201 QQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASE---GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKH 1277 (1852)
Q Consensus 1201 ~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e---~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~ 1277 (1852)
..+..+.++...+....--+-+....|..+--+|+++ +..|++.+.-+.+++..++..++-+++-+..+.....|+.
T Consensus 1022 ~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~ 1101 (1822)
T KOG4674|consen 1022 QANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKE 1101 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHH
Confidence 6666666666666666555556666666555566654 5677888999999999999999999999999999999987
Q ss_pred hhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhH--HHHHHHhhhhhhhHH--HHHH---HHHHHHHHHHHH
Q 000211 1278 CQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQS--ELSEMHELLLAVDVR--LIFT---RTQYEAWVEELV 1350 (1852)
Q Consensus 1278 ~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~--hL~El~e~l~A~dvr--iiF~---KeQYEtkvqEL~ 1350 (1852)
..| ..|+.-++.+|.+|+..++--|..-........ -++-|++. -.|++ |.|+ |+=.++++.-+.
T Consensus 1102 ~~L------eqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g--~sdL~~iv~~LR~Ekei~~tk~~~lk 1173 (1822)
T KOG4674|consen 1102 DAL------EQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG--LSDLQNIVSFLRKEKEIAETKLDTLK 1173 (1822)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 766 678889999999999999855422221111111 12222222 01111 1222 223444444433
Q ss_pred HHHhhchhhHHHHHhhhccHHHHHHHhh---------------------------hhhhHHHHHHHHHHHhHHHHHHHHH
Q 000211 1351 QQVYSTDRLLTELHTKNVDVETVLNSCL---------------------------AREAQCNEENARLLTSLDTLRSELD 1403 (1852)
Q Consensus 1351 ~QL~~Skk~~eElq~K~qDaedeln~~l---------------------------ksEa~~~keNaeL~~~I~eLesELe 1403 (1852)
.-....+.-.+-+.+..+|+.+.|+.|. -+=..+-++|..+.-+|-+|+..++
T Consensus 1174 ~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~ 1253 (1822)
T KOG4674|consen 1174 RENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIE 1253 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333 2233444556666666666666666
Q ss_pred HHHHhhHhhhhchhhhhhchh--------------hhhhhhHHhhhhhhhh----hhhhHHHHHHHHHhhhccHHHH
Q 000211 1404 SAIAENRVLFHENNSLIAQSE--------------EYKSRAETMADNYGEH----KSQLALEVERMKQLLVGSEEEI 1462 (1852)
Q Consensus 1404 asiaekR~L~nand~~~AElE--------------E~Kqr~E~~l~~~~Ee----ksk~a~Eve~lK~LL~~~eeei 1462 (1852)
.+-.+.=.|=+.+-.+++++. .+|+|-...+..|..- =.+...++.+||.=|++-+..|
T Consensus 1254 kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~ 1330 (1822)
T KOG4674|consen 1254 KLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLI 1330 (1822)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554444444444444443 6777777777665332 1334445555554444443333
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.67 E-value=8e-08 Score=128.66 Aligned_cols=256 Identities=19% Similarity=0.250 Sum_probs=163.5
Q ss_pred hhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhh
Q 000211 1093 DLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELH 1169 (1852)
Q Consensus 1093 dl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~ 1169 (1852)
+++.++.+|-.+|++......+..-+..-+ ++..+...+++.....++..+....-+. ...++.-+++|...+.
T Consensus 1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr---~~~l~~E~eeL~~~l~ 1684 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERR---LAALQAELEELREKLE 1684 (1930)
T ss_pred hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344555555555555544444444333222 3333444444444333333333222211 1225555566666666
Q ss_pred ccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHH
Q 000211 1170 GERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLR 1249 (1852)
Q Consensus 1170 ~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~ 1249 (1852)
++.+-.-.+-....++.+.++...++=.-......+|.+-+--|+++=.+.+..+.---++.....-+..++...|..=.
T Consensus 1685 ~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq 1764 (1930)
T KOG0161|consen 1685 ALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQ 1764 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHH
Confidence 66555555555555666666666666555566666666666666666666666665555666777778888888888888
Q ss_pred HHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-hhhcccchhhhHHHHHHHhhh
Q 000211 1250 DELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-SEESSSVTSLQSELSEMHELL 1328 (1852)
Q Consensus 1250 eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~-~~ktsefk~Ls~hL~El~e~l 1328 (1852)
+....+-+.|-.||..|.+|..+|++.+... ...++-.+.-|..++.+||..++.- .+....++
T Consensus 1765 ~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a--~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k------------- 1829 (1930)
T KOG0161|consen 1765 ETSQKLERLKKSLERQVKDLQLRLDEAEQAA--LKGGKKQIAKLEARIRELESELEGEQRRKAEAIK------------- 1829 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhH-------------
Confidence 8888888999999999999999999998887 4555678899999999999988732 23333222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhh
Q 000211 1329 LAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLA 1379 (1852)
Q Consensus 1329 ~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lk 1379 (1852)
+--++|.+|.||..|+.--+++.+-+ +|..|-++...+
T Consensus 1830 ---------~~rk~er~vkEl~~q~eed~k~~~~~----q~~~dkl~~k~~ 1867 (1930)
T KOG0161|consen 1830 ---------GLRKKERRVKELQFQVEEDKKNIERL----QDLVDKLQAKIK 1867 (1930)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHH
Confidence 12368999999999999999888765 455555554443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.59 E-value=7e-07 Score=120.01 Aligned_cols=576 Identities=19% Similarity=0.223 Sum_probs=291.1
Q ss_pred hHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchh-------HHH
Q 000211 992 NNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSE-------ESV 1064 (1852)
Q Consensus 992 ~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~e-------es~ 1064 (1852)
.|..+..++-..++.+...++.++.+=.-+-.++..+....+|... .++.+...+.+++.-|++-.. .-.
T Consensus 1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~---~~~~~~r~~~~~~~qle~~k~qle~e~r~k~ 1318 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA---KLSALSRDKQALESQLEELKRQLEEETREKS 1318 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444333333333333333333333222 223333333333333333221 223
Q ss_pred HHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhh
Q 000211 1065 KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKS 1144 (1852)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~s 1144 (1852)
.++..+..+..-+..|.+.+-.+-.-..+++..++...++...=...+++.-.+.. ..++++.......++..
T Consensus 1319 ~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~-------eelee~kk~l~~~lq~~ 1391 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRL-------EELEELKKKLQQRLQEL 1391 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHH
Confidence 34444444444455555555666666677777777777777655544444333311 11222222211111111
Q ss_pred HHHHHHH-HHHHhHhhhhhhhhhhhhccccchHH-------HHhhhhhhHHHHHHHHHhhhhhhhhh-------hHHHHH
Q 000211 1145 EEAAKLA-VELDSVRNSLQSVHDELHGERSLSDE-------LKSRAIDISSQLNEKQQQLIDFDQQN-------SEMIQK 1209 (1852)
Q Consensus 1145 Ee~~k~A-~t~~q~e~~lqeL~~eL~~~~~~~e~-------LQsk~~Dves~Ln~~~~~e~e~~~en-------SeL~~~ 1209 (1852)
++....| .....++.....|.+++.+.+.+.+. |-++....+.+|+..-.+...+..+. ..+.+.
T Consensus 1392 qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~te 1471 (1930)
T KOG0161|consen 1392 EEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTE 1471 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1111111 22222333444444444444333322 23333333334433333333222221 222222
Q ss_pred HHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhccc--ccc
Q 000211 1210 IAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLD--QQK 1287 (1852)
Q Consensus 1210 ~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd--~~~ 1287 (1852)
+-.|......+...+..-+.+...+..++..|...+......+|.+.-.+..++..+.+|..+|.|....+..-+ ...
T Consensus 1472 l~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr 1551 (1930)
T KOG0161|consen 1472 LQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLR 1551 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 333445555555566666667777888888888888888888888888899999999999999999988752221 111
Q ss_pred hHHHHHHHHHhhhHhhhhhhhhhcccc-hhhhHHHHHHHhhhhh-hhHHHHHH--HHHHHHHHHHHHHHHhhchhhHHHH
Q 000211 1288 SELVQLKLLVLDLESEKSRASEESSSV-TSLQSELSEMHELLLA-VDVRLIFT--RTQYEAWVEELVQQVYSTDRLLTEL 1363 (1852)
Q Consensus 1288 ~EL~~Lk~qv~DLese~S~~~~ktsef-k~Ls~hL~El~e~l~A-~dvriiF~--KeQYEtkvqEL~~QL~~Skk~~eEl 1363 (1852)
.++. +...-++.+++++..-++.+.. +++...+..|...+.+ +-.|-.++ |--+++-+.+|.-+|+.+-+--++.
T Consensus 1552 ~~~~-~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~ 1630 (1930)
T KOG0161|consen 1552 LQLE-LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDA 1630 (1930)
T ss_pred HHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHH
Confidence 2222 2333455556666543332221 3455666666666655 23333333 3368999999999999999988888
Q ss_pred Hhhh---ccHHHHHHH----hhhhhhHHH-------HHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhh
Q 000211 1364 HTKN---VDVETVLNS----CLAREAQCN-------EENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1852)
Q Consensus 1364 q~K~---qDaedeln~----~lksEa~~~-------keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1852)
++.+ ++....+.. +..+.-... .+++-|...+.+|...++++...+|.+=-.+++.. |.-++
T Consensus 1631 ~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~----e~i~~ 1706 (1930)
T KOG0161|consen 1631 QKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELA----ERVNE 1706 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHH
Confidence 7654 555554333 333332222 56677777777777777777766665433333211 11111
Q ss_pred hHHhhhhhhhhhhhhHHHH----------------------------HHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHH
Q 000211 1430 AETMADNYGEHKSQLALEV----------------------------ERMKQLLVGSEEEIDDLMMSREELEIKVVVLKA 1481 (1852)
Q Consensus 1430 ~E~~l~~~~Eeksk~a~Ev----------------------------e~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~ 1481 (1852)
.-+..-.....|.++..+| +++..=|.+-.+..-.|.-.|--+|-.|==|+.
T Consensus 1707 ~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~ 1786 (1930)
T KOG0161|consen 1707 LNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQL 1786 (1930)
T ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223333334444444 444443444444444444445555555555555
Q ss_pred HHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhhhhcccCCCcchhhhh
Q 000211 1482 KLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLHEKRESEGLPTGMQES 1561 (1852)
Q Consensus 1482 kl~e~~~~i~~~~~~~~el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaeaec~~~~ek~e~eg~~~amqes 1561 (1852)
+|++.+... +.|+---+.+|..+..+|-.-|..- .++. +|+
T Consensus 1787 rL~e~E~~a--~~~~k~~i~~Learir~LE~~l~~E-----------------------------~~~~--------~e~ 1827 (1930)
T KOG0161|consen 1787 RLDEAEQAA--LKGGKKQIAKLEARIRELESELEGE-----------------------------QRRK--------AEA 1827 (1930)
T ss_pred HHHHHHHhh--hhccHHHHHHHHHHHHHHHHHHhHh-----------------------------hhhh--------HHH
Confidence 555543322 2233344444544444444433321 1111 222
Q ss_pred hHHHHHHHHhHHHHHHhhhhhccchhhhHHHHHHHHHhhhHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhh
Q 000211 1562 LRIAFIKEQCETKVQELKHHLSISKKHSEEMLWKLQDAIDEIENRKKSEAAHLKKNEELGVKILELEAELQSLISDK 1638 (1852)
Q Consensus 1562 lriafikeqyetklqelk~qlsisKkhsEeml~KLqdaide~e~rkKse~~~~K~~eEL~~kilElEaelq~~~sdK 1638 (1852)
.+.. -++|.++-|+.+|+.==||+.+ .+||.+|....+=|. +--.+.|.|...+...+--
T Consensus 1828 ~k~~---rk~er~vkEl~~q~eed~k~~~----~~q~~~dkl~~k~~~----------~krQleeaE~~~~~~~~k~ 1887 (1930)
T KOG0161|consen 1828 IKGL---RKKERRVKELQFQVEEDKKNIE----RLQDLVDKLQAKIKQ----------YKRQLEEAEEEANQNLSKY 1887 (1930)
T ss_pred hHHH---HHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHH
Confidence 2222 2678899999999998888765 568888877765443 3334555555555554433
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=9.5e-07 Score=117.11 Aligned_cols=539 Identities=13% Similarity=0.095 Sum_probs=274.8
Q ss_pred hHHHHHHHHHHHHHHhhhhcccccccccccccccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhH
Q 000211 856 NLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQN-LESKDLTSVIMRLEVLQRNACQKIRQLMQEKK----ALIDEK 930 (1852)
Q Consensus 856 ~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~d-l~~~d~~~v~~~le~~q~~~c~kil~l~~ek~----~l~~e~ 930 (1852)
.....+..+..-+..+-..|+ |.|++- + +...++..++..+..........+-.+..+.. .+....
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L 428 (1311)
T TIGR00606 358 RHQEHIRARDSLIQSLATRLE--LDGFER-------GPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQA 428 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--cCCCCC-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555666 333221 2 23345777777777777766666655544332 223333
Q ss_pred hHhhhhcccchhhHHHH---HHHHHhhHHhh---hhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccch
Q 000211 931 DRAEMSFSKSESDIVLV---KQKFEHDLRNM---IDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDL 1004 (1852)
Q Consensus 931 d~~~~~~~~aes~~~~~---kqk~e~d~~~m---~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l 1004 (1852)
+-.+.++...+..+-.- +.+....+... +..+.++..-+..|+.++..+-.++.- +.. ...-..+-..+
T Consensus 429 ~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~i 503 (1311)
T TIGR00606 429 DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK---AEK--NSLTETLKKEV 503 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHH---HHh--hhhhhHHHHHH
Confidence 33333333222222111 11222222222 333456666666777666665544411 111 11223334445
Q ss_pred hHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHH---HhHHHhhHhhh
Q 000211 1005 DYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEV---DSFKQSFQSLH 1081 (1852)
Q Consensus 1005 ~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El---~slK~s~qSLh 1081 (1852)
...-.++-.|..+-..|.++|..+..-+...-++-+.-.++...++.+-.-+..-++.-.++...+ ..|.+.+.++.
T Consensus 504 ~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 583 (1311)
T TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS 583 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 555555666666666667777777666666666655556666555554433333222222221100 22334444444
Q ss_pred HHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhH-------HhhhhhhHHHHHHHHHH
Q 000211 1082 DELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLM-------VSLQNKSEEAAKLAVEL 1154 (1852)
Q Consensus 1082 dEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~-------~~Lls~sEe~~k~A~t~ 1154 (1852)
+++...+.-.......++.+...+......+.....+....-+.+.++ ..-.... -++-...+++..+..+.
T Consensus 584 ~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~ 662 (1311)
T TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-CGSQDEESDLERLKEEIEKSSKQRAMLAGAT 662 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333333332222210 0111111 12222233333444777
Q ss_pred HhHhhhhhhhhhhhhccc-------cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHh
Q 000211 1155 DSVRNSLQSVHDELHGER-------SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEY 1227 (1852)
Q Consensus 1155 ~q~e~~lqeL~~eL~~~~-------~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~ 1227 (1852)
..|+.+++..+++-+.+| ..-+..+....++++.+................+...++.|..-+...-...
T Consensus 663 ~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~--- 739 (1311)
T TIGR00606 663 AVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII--- 739 (1311)
T ss_pred HHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---
Confidence 788999998865555554 3344456677777777777656666666666677777776644333222211
Q ss_pred HHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhh---hhhhhhhcccccchHHHHHHHHHhhhHhhh
Q 000211 1228 AEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN---EKHCQLLDLDQQKSELVQLKLLVLDLESEK 1304 (1852)
Q Consensus 1228 kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLd---Ek~~qL~~fd~~~~EL~~Lk~qv~DLese~ 1304 (1852)
.....++-.++..+..+.+++..+..--++++.++..++..++ .....+..++....++..++.++.+|+.+.
T Consensus 740 ----~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l 815 (1311)
T TIGR00606 740 ----DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL 815 (1311)
T ss_pred ----HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122345556667777777777777777777777777777773 344555666888899999999999998888
Q ss_pred hhhhhhcccchhhhHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH---HhhhccHHHHHHHhh
Q 000211 1305 SRASEESSSVTSLQSELSEMHELLLAV---DVRLIFTRTQYEAWVEELVQQVYSTDRLLTEL---HTKNVDVETVLNSCL 1378 (1852)
Q Consensus 1305 S~~~~ktsefk~Ls~hL~El~e~l~A~---dvriiF~KeQYEtkvqEL~~QL~~Skk~~eEl---q~K~qDaedeln~~l 1378 (1852)
....- .-++..|...+..+...+.+. -=.+.-.+.+....+..|..++.-.......+ .....+.+..++...
T Consensus 816 ~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~ 894 (1311)
T TIGR00606 816 QGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELS 894 (1311)
T ss_pred ccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74432 224455666666666555552 12223344455666777744443333222222 223344445555444
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchh
Q 000211 1379 AREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN 1417 (1852)
Q Consensus 1379 ksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand 1417 (1852)
..-..+..+..++...|..+..+++.+.++...+...++
T Consensus 895 ~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1311)
T TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKE 933 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555554444444443
No 6
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.46 E-value=5.6e-06 Score=110.44 Aligned_cols=634 Identities=18% Similarity=0.189 Sum_probs=312.7
Q ss_pred HHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccccc
Q 000211 805 YEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCL 884 (1852)
Q Consensus 805 y~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l 884 (1852)
..-|..+..+|..=+.+ -+.-.+--++++..+.+.+-+...+++.++..|+.++.+| +++|-.
T Consensus 821 lq~~~~~~r~l~~~~~~----------~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL----~k~l~~--- 883 (1822)
T KOG4674|consen 821 LQEKSSDLRELTNSLEK----------QLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL----EKRLKS--- 883 (1822)
T ss_pred HHHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---
Confidence 45555555555443332 2233333444444455555555555555555555555554 111111
Q ss_pred cccccccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHhHhhhhcccchhhHHHHHHHHHh
Q 000211 885 HNKSADQNLE----SKDLTSVIMRLEVLQRNACQKIRQLMQEKKA-------LIDEKDRAEMSFSKSESDIVLVKQKFEH 953 (1852)
Q Consensus 885 ~~~s~~~dl~----~~d~~~v~~~le~~q~~~c~kil~l~~ek~~-------l~~e~d~~~~~~~~aes~~~~~kqk~e~ 953 (1852)
...-.+++. +.|.+-..-. .+..+.+|=.|..+..+ +.++--...-++...++.+...+-.|+.
T Consensus 884 -~~~~~~~l~~~~~~~d~~~~~~~----Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea 958 (1822)
T KOG4674|consen 884 -AKTQLLNLDSKSSNEDATILEDT----LRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEA 958 (1822)
T ss_pred -hHHHHhhccccchhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 111222333 3344433333 34455555444444333 3333344445555666677777777778
Q ss_pred hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHH
Q 000211 954 DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTE 1033 (1852)
Q Consensus 954 d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~ 1033 (1852)
++.....|+.-.+.-+-.|+.+++.+-+.+--+.+-.+ ..++.+=.++..+.+.|..+-.-+.+......
T Consensus 959 ~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e----------~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~ 1028 (1822)
T KOG4674|consen 959 KIESLHKKITSLEEELSELEKEIENLREELELSTKGKE----------DKLLDLSREISSLQNELKSLLKAASQANEQIE 1028 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh----------hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877776666666666666544433222211 12223333333333333333322222221111
Q ss_pred -----------hhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHH-----------Hhh
Q 000211 1034 -----------EFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVER-----------SLR 1091 (1852)
Q Consensus 1034 -----------E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aer-----------sl~ 1091 (1852)
=++.+-..-+-=..+..++...++.-.++-.++..|+..|+.++++.|+.+-..- ...
T Consensus 1029 ~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~ 1108 (1822)
T KOG4674|consen 1029 DLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEV 1108 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHH
Confidence 1111111111112345567777888888889999999999999999998875432 222
Q ss_pred hhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHH-HHHHhHhhhhhhhhhhhhc
Q 000211 1092 DDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLA-VELDSVRNSLQSVHDELHG 1170 (1852)
Q Consensus 1092 edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A-~t~~q~e~~lqeL~~eL~~ 1170 (1852)
.-+.....+|-.+.+.+|.+|....+.-++ ...|.|..=++.--++.++. -++.-+...+.=+-.+...
T Consensus 1109 ~~~~~~~~~L~~qNslLh~qie~~s~~~~~----------~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1109 NELKKRIESLEKQNSLLHDQFEELSQQSAV----------SNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------ccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 333444444444444555555444444332 12222222222233333333 4555566666666677777
Q ss_pred cccchHHHHhhhhhhHHHHHHHHHhh----------hhhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhHHHhhhhhcc
Q 000211 1171 ERSLSDELKSRAIDISSQLNEKQQQL----------IDFDQQNSEMIQKIAE---LTSENQALMVSLQEYAEESSRLASE 1237 (1852)
Q Consensus 1171 ~~~~~e~LQsk~~Dves~Ln~~~~~e----------~e~~~enSeL~~~~~~---L~~en~a~mv~L~d~kee~aq~a~e 1237 (1852)
+....+.+++...|++.-|+.+.+.- ..++...+.++...++ |..+|.+..--++++..+
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~------- 1251 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDK------- 1251 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 77888888888888888888877655 3344444555555544 455555554444444432
Q ss_pred ccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-----hhhcc
Q 000211 1238 GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-----SEESS 1312 (1852)
Q Consensus 1238 ~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~-----~~kts 1312 (1852)
+..++-=-..|+.....|+++++++.+.+.-+ ..|..+-|.++.||....... ..-.+
T Consensus 1252 --------------i~kl~~el~plq~~l~el~~e~~~~~ael~~l---~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1252 --------------IEKLNFELAPLQNELKELKAELQEKVAELKKL---EEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred --------------HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33333333333444444444444444443221 233344444444444432211 11111
Q ss_pred cchhhhHHHHHHHhhhhhhhHH------------------------------HHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 000211 1313 SVTSLQSELSEMHELLLAVDVR------------------------------LIFTRTQYEAWVEELVQQVYSTDRLLTE 1362 (1852)
Q Consensus 1313 efk~Ls~hL~El~e~l~A~dvr------------------------------iiF~KeQYEtkvqEL~~QL~~Skk~~eE 1362 (1852)
++..|+-.|. -++.++| ++. +--+++-|++...++..|.....+-...
T Consensus 1315 ei~~Lk~el~-~ke~~~~-el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~ 1392 (1822)
T KOG4674|consen 1315 EISRLKEELE-EKENLIA-ELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKA 1392 (1822)
T ss_pred HHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 1111111 111 1222333333333333331111100000
Q ss_pred HHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchh---hhhhh-hHHhhhhhh
Q 000211 1363 LHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE---EYKSR-AETMADNYG 1438 (1852)
Q Consensus 1363 lq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElE---E~Kqr-~E~~l~~~~ 1438 (1852)
-... ..--.+..+-..++..|...|.+|..+|..+-..-|.+-..-+-+.-|+- +.+++ .....+.|.
T Consensus 1393 ~~~~--------~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~~~~e~~~~~i 1464 (1822)
T KOG4674|consen 1393 HELM--------QEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEKSTTERLLEEI 1464 (1822)
T ss_pred HHHH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 0000 00011111112222224455555555555543333333333333333332 22222 222233333
Q ss_pred h-hhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHH
Q 000211 1439 E-HKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKL 1514 (1852)
Q Consensus 1439 E-eksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqkl 1514 (1852)
- -.......+.-.+....+++.....+...++++.=.+.++.+-....+-++.+.+.|-.++..++.+.-+..+++
T Consensus 1465 ~~~~e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1465 KKLLETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 224456666777777888888999999999999999999999999999999999999999999998888887776
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=9.2e-06 Score=108.04 Aligned_cols=116 Identities=11% Similarity=0.122 Sum_probs=84.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHH----H
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIE----A 534 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve----~ 534 (1852)
..++..|..+..+++.++.....++.+|+.+..-.+.+-...... .+.+..+..++..+..+-..++.+++.++ .
T Consensus 220 ~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~-~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~ 298 (1311)
T TIGR00606 220 CEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQG 298 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 567889999999999999999999999988888766665543332 33446677888888888888888887542 2
Q ss_pred HHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHh
Q 000211 535 MRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRAR 575 (1852)
Q Consensus 535 Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtR 575 (1852)
=.++|+.-...|.+....+.....+.+..--.++.-++..|
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~ 339 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLN 339 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23667777777888777777776666666666666554444
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.28 E-value=6.8e-06 Score=108.13 Aligned_cols=794 Identities=20% Similarity=0.264 Sum_probs=377.8
Q ss_pred HHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCH
Q 000211 819 LEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDL 898 (1852)
Q Consensus 819 l~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~ 898 (1852)
+..+.-+.+.++.+..-.+..++.+...++.+..+...+..-+..|..+-..... | .....++....+
T Consensus 160 iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y-----------~~l~~e~~~~~~ 227 (1163)
T COG1196 160 LIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-Y-----------QELKAELRELEL 227 (1163)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----------HHHHHHHHHHHH
Confidence 6677888899999999999999999999998888888888888888777665522 1 111123333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhcc----HHHHHHHHH
Q 000211 899 TSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVS----NALLQKLQL 974 (1852)
Q Consensus 899 ~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s----~~l~qklq~ 974 (1852)
.-+...+..+.. ++-.+.++...+..+.+..+..+..++.++...+.+++ +++.-+.++... ....+.+..
T Consensus 228 ~~~~~~~~~~~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~le~ 302 (1163)
T COG1196 228 ALLLAKLKELRK----ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE-ELREELEELQEELLELKEEIEELEG 302 (1163)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 44455556666666666666666666666666666653 344444333111 112334444
Q ss_pred HHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhh-hHHHHHHHHHHHH
Q 000211 975 RFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQ-TISELTEENRALM 1053 (1852)
Q Consensus 975 ~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~-~~~el~~En~al~ 1053 (1852)
++..+..+..-+....+.+...-..+...+...+.++......=..+.+.+..+.....++....- ...++.....++-
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 382 (1163)
T COG1196 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444444444445555555554444432233344444445555555544444 2222333333333
Q ss_pred HHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhh
Q 000211 1054 VALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKEN 1133 (1852)
Q Consensus 1054 ~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea 1133 (1852)
..+-+-..+...+..++..++..++++..++.....-.+++.....++..+++.++..+.....+...|..........-
T Consensus 383 ~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (1163)
T COG1196 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555566666666666666666666666666666666666666555555444444444422221111111
Q ss_pred hhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHH---HHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHH
Q 000211 1134 QDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDE---LKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKI 1210 (1852)
Q Consensus 1134 ~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~---LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~ 1210 (1852)
..+-.++....+.... ++.-++++..++..+...... ..-.-....+-+.+-...-.+++.-..+|.+.+
T Consensus 463 ~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Ai 535 (1163)
T COG1196 463 KELERELAELQEELQR-------LEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETAL 535 (1163)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHH
Confidence 1111111111111111 222222222222222211111 000000011112222224445555555777777
Q ss_pred HHH--------hhhH----HHHHHHHhHhH-------------HHh---hhhhccccchHHHHHhHHHHHHH--------
Q 000211 1211 AEL--------TSEN----QALMVSLQEYA-------------EES---SRLASEGNTSKETLQSLRDELQS-------- 1254 (1852)
Q Consensus 1211 ~~L--------~~en----~a~mv~L~d~k-------------ee~---aq~a~e~~~Lk~~L~Sl~eEL~~-------- 1254 (1852)
+.. +-.| ......|...+ ... ..+++.+..+-..|......+..
T Consensus 536 e~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~ 615 (1163)
T COG1196 536 EAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGD 615 (1163)
T ss_pred HHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCC
Confidence 663 1122 11122222211 000 00122223333344444443322
Q ss_pred ---------hhhhHHHh--hHHHHHhhhhhhhhhhhhhcc-------cccchHHHHHHHHHhhhHhhhhhhhhhc----c
Q 000211 1255 ---------ERSLRDEL--KNVVTDLTSQLNEKHCQLLDL-------DQQKSELVQLKLLVLDLESEKSRASEES----S 1312 (1852)
Q Consensus 1255 ---------ersLreeL--E~tV~~L~skLdEk~~qL~~f-------d~~~~EL~~Lk~qv~DLese~S~~~~kt----s 1312 (1852)
-+.+-... ..++.-|.+.+-+.--.++.= ...+.+|..|..++.+++........+- .
T Consensus 616 t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 695 (1163)
T COG1196 616 TLVVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKN 695 (1163)
T ss_pred eEEecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111122222222222111111 0011155556666666665554331111 1
Q ss_pred cchhhhHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHH
Q 000211 1313 SVTSLQSELSEMHELLLAVDVRLIFTRTQYE---AWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENA 1389 (1852)
Q Consensus 1313 efk~Ls~hL~El~e~l~A~dvriiF~KeQYE---tkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNa 1389 (1852)
.+..+..++.++.........++.+.+.+.. ...+.+..++...+.-.+++..........++.. -.+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~l~ 768 (1163)
T COG1196 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL-------EEELE 768 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 2234555555555555556666666666655 4455555555555555555443333333222222 22222
Q ss_pred HHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhh---hhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhh
Q 000211 1390 RLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEY---KSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLM 1466 (1852)
Q Consensus 1390 eL~~~I~eLesELeasiaekR~L~nand~~~AElEE~---Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~ 1466 (1852)
.+...+..++.+++..-...+.+..+-+....++.+. ...++..+.....++..+..+++.+..=+...+++++.|.
T Consensus 769 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333333333333322222222222222333322 2333334444444445678888888888889999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHhccc----cchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHH
Q 000211 1467 MSREELEIKVVVLKAKLAEQHAQVISSE----GYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAEC 1542 (1852)
Q Consensus 1467 ~~k~e~ei~~~vlk~kl~e~~~~i~~~~----~~~~el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaeaec 1542 (1852)
..-++++....-++.++.+.++++..++ ..-.+...+.++..++..++.+.--..+.+..-=..|..-....+.++
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 928 (1163)
T COG1196 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928 (1163)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887664 444555666666667666666554444443322222222222333333
Q ss_pred HhhhhhcccCCCcchhhhhhHHHHHHHHhHHHHHHhhhhhccchhhhHHHHHHHHHhhhHHhhhhhhhhhhhhhhhhhhh
Q 000211 1543 LKLHEKRESEGLPTGMQESLRIAFIKEQCETKVQELKHHLSISKKHSEEMLWKLQDAIDEIENRKKSEAAHLKKNEELGV 1622 (1852)
Q Consensus 1543 ~~~~ek~e~eg~~~amqeslriafikeqyetklqelk~qlsisKkhsEeml~KLqdaide~e~rkKse~~~~K~~eEL~~ 1622 (1852)
....+.-..++|++... ..+.++..++-+ |.....-- ..-+-.-++..-
T Consensus 929 ~~~~~~~~~~~~~~~~~----------~~~~~i~~le~~------------------i~~lg~VN---~~Aiee~e~~~~ 977 (1163)
T COG1196 929 PELEEELEEEYEDTLET----------ELEREIERLEEE------------------IEALGPVN---LRAIEEYEEVEE 977 (1163)
T ss_pred HHHHhhhccccccchhH----------HHHHHHHHHHHH------------------HHhccCCC---hhHHHHHHHHHH
Confidence 33334433444433322 233333333322 11111110 122233345555
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhHhhhhhhhccccchhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 000211 1623 KILELEAELQSLISDKREKTKAYDLAKAELECSLMSLECCKEEKEKLEVSLHECNEEKSRLYSDL 1687 (1852)
Q Consensus 1623 kilElEaelq~~~sdKRe~~~aYD~~kae~eCsl~sleCCkeEKqklEasL~eC~eE~~ki~~el 1687 (1852)
+.-+|..+++++.-+++...+....|+.+. +..+.++.+.-|+.-.+|...|
T Consensus 978 r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~-------------~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 978 RYEELKSQREDLEEAKEKLLEVIEELDKEK-------------RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777777666666543 4566666666666666655444
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.18 E-value=0.0001 Score=94.44 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=41.0
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHH
Q 000211 790 EWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMH 869 (1852)
Q Consensus 790 e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~ 869 (1852)
+|..++.++..++..+..+..+...+..-+.+-.-+...++.++..+...+..+..++..+-+-...+...+..++.++.
T Consensus 226 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~ 305 (1179)
T TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555555555555555554444443333334444555555555555555555554444445444555554444
Q ss_pred Hh
Q 000211 870 DM 871 (1852)
Q Consensus 870 ~~ 871 (1852)
.+
T Consensus 306 ~~ 307 (1179)
T TIGR02168 306 IL 307 (1179)
T ss_pred HH
Confidence 44
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.05 E-value=5.4e-05 Score=96.41 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=30.6
Q ss_pred HHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhh
Q 000211 1243 ETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESE 1303 (1852)
Q Consensus 1243 ~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese 1303 (1852)
..+..+.+.+.....-.++++..+..++.+++.....+ ....++..|+.++.+++..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~----~~~~~l~~l~~~~~~l~~~ 524 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV----EAEDRIERLEERREDLEEL 524 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 45555555666665566666666666665555433322 2244555555555555553
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.97 E-value=0.00074 Score=87.34 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhHhhh
Q 000211 1620 LGVKILELEAELQSLISDKREKTKAYDLAK 1649 (1852)
Q Consensus 1620 L~~kilElEaelq~~~sdKRe~~~aYD~~k 1649 (1852)
+..+...|...+.++...+.....++..+.
T Consensus 984 ~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555554444444444
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.88 E-value=0.0013 Score=84.58 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhh
Q 000211 1612 AHLKKNEELGVKILELEAELQSLI 1635 (1852)
Q Consensus 1612 ~~~K~~eEL~~kilElEaelq~~~ 1635 (1852)
...+..++|..-|-++..++..++
T Consensus 1004 dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 1004 FLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777777777777776
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.85 E-value=0.0017 Score=84.03 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHHHhhhHHHhccccch----hHHHHHHHHhHHHHHHHHHHHhhhhhhc
Q 000211 1478 VLKAKLAEQHAQVISSEGYI----DEQKMLQNQCNELRRKLSEQILKTEEFR 1525 (1852)
Q Consensus 1478 vlk~kl~e~~~~i~~~~~~~----~el~~l~~~~~eltqklseqilkteefk 1525 (1852)
-+..++++++++|..++.-. .+...+..++..|..++.+-.=....++
T Consensus 955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~ 1006 (1164)
T TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006 (1164)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777776665433 7777777777777777766544333333
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=98.82 E-value=0.00037 Score=89.09 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=33.6
Q ss_pred hhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhh
Q 000211 1233 RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1852)
Q Consensus 1233 q~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL 1280 (1852)
.+...+..+...+..+..++...+++...++..+..+...|.+-.|++
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~ 456 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 344555666667777777777777777777777777776677777777
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.79 E-value=0.00064 Score=86.61 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.6
Q ss_pred hhhHHHHHH
Q 000211 1316 SLQSELSEM 1324 (1852)
Q Consensus 1316 ~Ls~hL~El 1324 (1852)
++..++.++
T Consensus 529 ~l~~~~~~l 537 (880)
T PRK03918 529 KLKEKLIKL 537 (880)
T ss_pred HHHHHHHHH
Confidence 333444433
No 16
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.48 E-value=3.2e-08 Score=126.11 Aligned_cols=781 Identities=20% Similarity=0.251 Sum_probs=12.2
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHhHHHhhhhhhhhH
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML----------GELQNLRNEHSSCLYTV 525 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~----------~ElqnLr~EhS~~l~tI 525 (1852)
+.+-.|+.+|-+|-.+||.-|.-|..-+++-..|...++.|+..|+...-.+. .|+..|+.+.-. ..
T Consensus 39 k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe---~~ 115 (859)
T PF01576_consen 39 KKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEE---AN 115 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHH---HH
Confidence 56778899999999999999999999999999999999999999887654433 335555533211 11
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhh---hh
Q 000211 526 SSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQVLSMY---QT 602 (1852)
Q Consensus 526 s~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~LS~Qm~S~f---e~ 602 (1852)
..-++.+..|...-++++..+.+.++.+.+.|.-.| |.|..- +.+..-|..++.+.. ..
T Consensus 116 ~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lE-----------K~k~~l-------~~e~~dL~~~l~~~~k~k~~ 177 (859)
T PF01576_consen 116 LQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLE-----------KEKSQL-------EAELDDLQAQLDSLQKAKQE 177 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH-------HhHHHHHHHHHHHHHHHHHH
Confidence 234556666677777777777777777777665444 334432 233333333332221 11
Q ss_pred hHHHHHHHhhcCCCCcchhhhhhhhhccCCCcchhhhhhhhhhhhcccccccc-------cCccchHHhhhhhHHHHHHH
Q 000211 603 NENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQH-------LGGDILIEDLKRSLYLQEGL 675 (1852)
Q Consensus 603 NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~kl~~~~n~~~~~k~q~-------l~~~i~~e~lkrsl~lqe~l 675 (1852)
.|+..++ ++..+.++..+++...++- =.-.--+.+|.+.+
T Consensus 178 ~Ek~~K~---------------------------lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qL------ 224 (859)
T PF01576_consen 178 AEKKRKQ---------------------------LEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQL------ 224 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhh---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 1222211 2233333333322222100 00001122222222
Q ss_pred HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhccc-
Q 000211 676 YRKVEEEACELLSVNIYLDVFSKTLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYKA- 754 (1852)
Q Consensus 676 ~~~ve~e~~em~~~ni~~~vfs~~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~sl~e~~~- 754 (1852)
++ .+.-+.++ ......+...|+++..+|+.-+-++..|.-+|..+=.++-.|++--.
T Consensus 225 ----ee--~e~~~~~l----------------~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee 282 (859)
T PF01576_consen 225 ----EE--AESQLSQL----------------QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE 282 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HH--HHHHHHHH----------------HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 11 12222222 23344566778888888888888888888777777666665554321
Q ss_pred --hhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhH-HHHHHHHHhhhhcccchh
Q 000211 755 --SCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKT-ELANLLEKESLENGNLRR 831 (1852)
Q Consensus 755 --~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~-~l~~ll~ke~l~~~~l~~ 831 (1852)
..... +.-. +..+-.+...|.+||+..+..+. +|... +..|..
T Consensus 283 E~e~k~~------------------------l~~q---lsk~~~El~~~k~K~e~e~~~~~EelEea-------KKkL~~ 328 (859)
T PF01576_consen 283 EEEAKSE------------------------LERQ---LSKLNAELEQWKKKYEEEAEQRTEELEEA-------KKKLER 328 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHH------------------------HHHH---HHHHhhHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHH
Confidence 11111 1111 12233455668889998888754 34432 233555
Q ss_pred hhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHHHHHHHH
Q 000211 832 ETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRN 911 (1852)
Q Consensus 832 e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~ 911 (1852)
.|..+++.++..+..++.+--.+.-|+.=+.-+...|.+. .+...+|+.=|++
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~---------------------------~~~~~~LeKKqr~ 381 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA---------------------------QAAAAELEKKQRK 381 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHh
Confidence 6777777777766666655544444433333332222221 2223345554433
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHH
Q 000211 912 ACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEE 991 (1852)
Q Consensus 912 ~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee 991 (1852)
.=.-+-.+......+..++|.++...+..++++..++..+ ..+.+.+....--...|+.++..++..++-..-.=-
T Consensus 382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l----ee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~ 457 (859)
T PF01576_consen 382 FDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL----EELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH 457 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH
Confidence 2222223344445677788888888899999999888766 345555555555566777777777655443211111
Q ss_pred hHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHH----HH
Q 000211 992 NNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVK----LA 1067 (1852)
Q Consensus 992 ~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~----~~ 1067 (1852)
........|-..++.|..+|.++....+..=+.++- +-..+..+. .-+=--|++|.++.-. +.
T Consensus 458 eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lR----------l~~el~~~r---~e~er~l~eKeeE~E~~Rr~~q 524 (859)
T PF01576_consen 458 ELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLR----------LQVELQQLR---QEIERELQEKEEEFEETRRNHQ 524 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH---HHHHHHHHhhhhHHHHHHHhhH
Confidence 111112222222222222222222222222111111 111111221 1122345677766543 46
Q ss_pred HHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhh
Q 000211 1068 LEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKS 1144 (1852)
Q Consensus 1068 ~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~s 1144 (1852)
..|++|+.+|..-+...........+++..+.+|-.+|++-...-.++--+...+ ++.+...++++.....++....
T Consensus 525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~ 604 (859)
T PF01576_consen 525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQL 604 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7778888887777777666777778888888888888887766655544443333 5555555555554332222211
Q ss_pred HHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHH
Q 000211 1145 EEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSL 1224 (1852)
Q Consensus 1145 Ee~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L 1224 (1852)
-.+- --...+.+-++++...+....+..-.+..-..|+...++.....-.-.......|..-+.-|..+-.+....+
T Consensus 605 ~~~e---~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~ 681 (859)
T PF01576_consen 605 AVSE---RRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEA 681 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0112234444444444444443333333333444444433333333333444444444444544444444444
Q ss_pred hHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhh
Q 000211 1225 QEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEK 1304 (1852)
Q Consensus 1225 ~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~ 1304 (1852)
..--+.......++.+|...|..-.+....+-..|-.|+..|-+|+.+|++....- ...++.-+..|...|.+|+.++
T Consensus 682 ~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~--~~~~k~~i~kLE~ri~eLE~~L 759 (859)
T PF01576_consen 682 EAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSA--LKGGKKQIAKLEARIRELEEEL 759 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcccccHHHHHhHHHHHHHHHH
Confidence 43334445677788888888888888888889999999999999999999987766 4566778888888888888887
Q ss_pred hhh-hhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhH
Q 000211 1305 SRA-SEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQ 1383 (1852)
Q Consensus 1305 S~~-~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~ 1383 (1852)
-.- ...+...+ .+ .-++-+|-||..|+.-.+++.+.++ |..+-++..+
T Consensus 760 e~E~r~~~~~~k----~~------------------rk~er~~kEl~~q~ee~~k~~~~~~----d~~~kl~~k~----- 808 (859)
T PF01576_consen 760 ESEQRRRAEAQK----QL------------------RKLERRVKELQFQVEEERKNAERLQ----DLVDKLQLKL----- 808 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH----HH------------------HHHHhhHHHHHHHHHhHHHHHHHHH----HHHHHHHHHH-----
Confidence 632 22222222 11 1267889999999988888776543 4444333333
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhh
Q 000211 1384 CNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYG 1438 (1852)
Q Consensus 1384 ~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~ 1438 (1852)
-.++-.++.+=...-.....|+-+.-||++-..+.+..-..++
T Consensus 809 ------------k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~e~~~~~e~~l~ 851 (859)
T PF01576_consen 809 ------------KQLKRQLEEAEEEASRNLAKYRKLQRELEEAEERAEAAERELN 851 (859)
T ss_dssp ----------------------------------SSSSHHHHHTCCHHHHHHHHH
T ss_pred ------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333223345666666777766555555444443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.36 E-value=0.029 Score=72.06 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhh
Q 000211 1387 ENARLLTSLDTLRSELDSAIAENRVL 1412 (1852)
Q Consensus 1387 eNaeL~~~I~eLesELeasiaekR~L 1412 (1852)
+-.++...+..+..+++....+-+.|
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 557 KLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444443333
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.28 E-value=0.061 Score=72.42 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH
Q 000211 1063 SVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1852)
Q Consensus 1063 s~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1852)
-..+-.+...++.-++....++...+.-.+.+...+.++-..|+...-+|..|-.++..=
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~ 551 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPG 551 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCc
Confidence 344556777888888999999999999999999999999999999999999998777443
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.22 E-value=0.076 Score=71.27 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhcccc
Q 000211 698 KTLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDV 777 (1852)
Q Consensus 698 ~~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~sl~e~~~~~i~kc~d~a~~nq~lea~lq~~ 777 (1852)
..+++.+.+....+.-....+..+..++....+..+.+..++.....++..+.+....+-..|.+.-.+=--|++.++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677778888888888888888888888888888888888877775555555443333344444433
Q ss_pred c
Q 000211 778 T 778 (1852)
Q Consensus 778 ~ 778 (1852)
.
T Consensus 459 ~ 459 (1163)
T COG1196 459 R 459 (1163)
T ss_pred H
Confidence 3
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.15 E-value=0.08 Score=68.64 Aligned_cols=340 Identities=19% Similarity=0.280 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHhhhhccchH-------HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhh
Q 000211 966 NALLQKLQLRFEAVADKLKVSSE-------VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRS 1038 (1852)
Q Consensus 966 ~~l~qklq~~~e~~~~k~k~~se-------~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~t 1038 (1852)
+--+++|+.++..+-+++.++.. -=+-|-+...-.=+++|.++.+|..-.++...+.-++.++..+..++
T Consensus 244 Er~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~--- 320 (775)
T PF10174_consen 244 ERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM--- 320 (775)
T ss_pred HHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---
Confidence 33455577777777777766543 11233344443445577777777777766666666666665555543
Q ss_pred hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHh
Q 000211 1039 KQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1852)
Q Consensus 1039 K~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1852)
+.-+.-|.+ ||--|......|-.+++.|..-+..-|..+-.--.....+.+..+-+++++..+...+.--+-+
T Consensus 321 r~hi~~lke-------sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~k 393 (775)
T PF10174_consen 321 RQHIEVLKE-------SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERK 393 (775)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 3334556666666777766666666666665555566666666666666666666666554444
Q ss_pred hHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHH--HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH-HHHHh
Q 000211 1119 KSELIQKTAVLTKENQDLMVSLQNKSEEAAKLA--VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLN-EKQQQ 1195 (1852)
Q Consensus 1119 nqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A--~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln-~~~~~ 1195 (1852)
...|-.++=+..+--..--..|....+-+..-| +.-......|++-- ...+.++..-.++-.-.. .....
T Consensus 394 i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~-------~eker~~e~l~e~r~~~e~e~~Ee 466 (775)
T PF10174_consen 394 INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEAL-------REKERLQERLEEQRERAEKERQEE 466 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444422211111111111111111111111000 11111111111111 122222222211111111 12233
Q ss_pred hhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHH------HHh
Q 000211 1196 LIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVV------TDL 1269 (1852)
Q Consensus 1196 e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV------~~L 1269 (1852)
-..|-.++.+|...++.|+..-.+.-..|.+.+++-+-+++...+-..-|.+++=++..-+-=-+.++..+ ..+
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~ 546 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAEL 546 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhh
Confidence 34667778888888899988888888888888888777777777767666666666644333222333222 122
Q ss_pred hhhhhhhhhhhh----cccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHH
Q 000211 1270 TSQLNEKHCQLL----DLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1852)
Q Consensus 1270 ~skLdEk~~qL~----~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~ 1325 (1852)
+..+......+. ..+....|+.+|-..+-.++.++...-.+ |..|..+|.+.+
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~k---i~~LekeLek~~ 603 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKK---IGELEKELEKAQ 603 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHhc
Confidence 222222222221 23455788888888888888887744333 335666655543
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.08 E-value=0.15 Score=69.00 Aligned_cols=528 Identities=18% Similarity=0.250 Sum_probs=226.7
Q ss_pred HHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhcc
Q 000211 921 QEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDL 1000 (1852)
Q Consensus 921 ~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l 1000 (1852)
++...+..........+...+.+.-..+.+|..++..+...+..=+.-|..++..-...- ..+ +.++...+ ..=+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye-~~~-i~~~~~~~-~~l~~~ 357 (1201)
T PF12128_consen 281 QEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE-DAD-IEQLIARV-DQLPEW 357 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-HHHHHHHH-HhhHHH
Confidence 334444444444444444555555555555555555555555555555544444333331 111 11222222 122455
Q ss_pred ccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhH-HHHHHHHHHhHHHhhHh
Q 000211 1001 FSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEE-SVKLALEVDSFKQSFQS 1079 (1852)
Q Consensus 1001 ~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ee-s~~~~~El~slK~s~qS 1079 (1852)
...+..+..++..|+++..|+..+...+-... +.........+++-..++++--.. -..+-..+.-+...++.
T Consensus 358 ~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~ 431 (1201)
T PF12128_consen 358 RNELENLQEQLDLLTSKHQDIESKYNKLKQKL------EEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQ 431 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777766665543222 222233344444444444333222 12222223333333322
Q ss_pred hhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhh--h-hHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh
Q 000211 1080 LHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLD--F-DQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS 1156 (1852)
Q Consensus 1080 LhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~s--f-d~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q 1156 (1852)
-+. ...+.+......+.+++...+..+.+ + ..+..++ +.....++.+..-..........+. ....+
T Consensus 432 ~~~------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 501 (1201)
T PF12128_consen 432 QSQ------EQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQL-EQADKRLEQAQEQQNQAQQAVEELQ---AEEQE 501 (1201)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 111 11233333344444444444444432 1 1222222 2211111111111111111111111 22233
Q ss_pred HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhh-hhhHHHHHHHHHhhhH--------HHHHHHH-hH
Q 000211 1157 VRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQ-QNSEMIQKIAELTSEN--------QALMVSL-QE 1226 (1852)
Q Consensus 1157 ~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~-enSeL~~~~~~L~~en--------~a~mv~L-~d 1226 (1852)
++..-+....+|+..+.....++..+.++..+|........+|-. +.-.|...|-.++++- +.+...- .+
T Consensus 502 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~d 581 (1201)
T PF12128_consen 502 LRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSD 581 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCccc
Confidence 333444445666777777777777777777777665555555543 3567888888864432 2111000 00
Q ss_pred hH-----HHhh----hhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHH
Q 000211 1227 YA-----EESS----RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV 1297 (1852)
Q Consensus 1227 ~k-----ee~a----q~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv 1297 (1852)
.= +-++ -++.+-..|++-+..+...|.......++++........++ ..++..+
T Consensus 582 slyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~-----------------~~~~~~~ 644 (1201)
T PF12128_consen 582 SLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKI-----------------EELKREI 644 (1201)
T ss_pred ccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 00 1111 12223334444444444444444444444433333333333 3333333
Q ss_pred hhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHh
Q 000211 1298 LDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSC 1377 (1852)
Q Consensus 1298 ~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~ 1377 (1852)
...+.+...... ....|..+...++..+. -.+.=.+.+.+..++.+..++...+....++...+.+...+++.-
T Consensus 645 ~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e 718 (1201)
T PF12128_consen 645 TQAEQELKQAEQ---DLQRLKNEREQLKQEIE---EAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNE 718 (1201)
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321111 11233333333332222 122334566788888888888888888877777766665555543
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchh-hhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHH---HHH
Q 000211 1378 LAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN-SLIAQSEEYKSRAETMADNYGEHKSQLALEVER---MKQ 1453 (1852)
Q Consensus 1378 lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand-~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~---lK~ 1453 (1852)
++. ......+.+...|..+..++++..++...-+.+++ ....+|. -+-=|.+.+..+..+-.++..+|.. -+.
T Consensus 719 ~~~--~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~-~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 719 LKA--QWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA-GKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 332 22333444444444444444444333222221111 0112221 1111233344444433333333322 223
Q ss_pred hhhccHHHHhh-------hhhhhhhHHHHHHHHHHHHHhhhHHHhcc
Q 000211 1454 LLVGSEEEIDD-------LMMSREELEIKVVVLKAKLAEQHAQVISS 1493 (1852)
Q Consensus 1454 LL~~~eeeid~-------l~~~k~e~ei~~~vlk~kl~e~~~~i~~~ 1493 (1852)
.+..|+.-... ++--+.+++..+-.++.++.+...++..+
T Consensus 796 ~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 842 (1201)
T PF12128_consen 796 EVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQL 842 (1201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333 33346666666666666665555554433
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.01 E-value=0.14 Score=66.52 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=83.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhHH--------HHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHH
Q 000211 791 WESLMMDFKSFQSKYEAIAAEKTE--------LANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTIN 862 (1852)
Q Consensus 791 ~e~~v~e~~~~esky~ac~~e~~~--------l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~ 862 (1852)
-+++=.+|..-.++..++..+... -..+-+.++-+-.-+++++..++.+...+..+.+.|..== -.|.-++
T Consensus 12 ~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~ 90 (775)
T PF10174_consen 12 NERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELN 90 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHH
Confidence 344444444445555555555433 4555666777777777777777777766665555443322 3444444
Q ss_pred HHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchh
Q 000211 863 NLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSES 942 (1852)
Q Consensus 863 ~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes 942 (1852)
.|+..+.+-=. ++.+.-. || .+++-+.+|..|++.+.-|-+.++..+..++.
T Consensus 91 rL~~~~e~~~~-----------------------e~e~l~~-ld----~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~ 142 (775)
T PF10174_consen 91 RLQQELEKAQY-----------------------EFESLQE-LD----KAQEQFERLQAERERLQRELERLRKTLEELQL 142 (775)
T ss_pred HHHHHhhhccc-----------------------ccchhhh-hh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433211 1111111 22 35667778888999999999999888888888
Q ss_pred hHHHHHH---HHHhhHHhhhhhh
Q 000211 943 DIVLVKQ---KFEHDLRNMIDKQ 962 (1852)
Q Consensus 943 ~~~~~kq---k~e~d~~~m~~kl 962 (1852)
.+.-++| ++.-.|+-|.+.|
T Consensus 143 ~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 143 RIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765 4455556565554
No 23
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.2 Score=66.45 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=93.5
Q ss_pred hhhhhhhHHHHHHH--HhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhH-----HHHHHHHHHHHH
Q 000211 797 DFKSFQSKYEAIAA--EKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNL-----QRTINNLQNKMH 869 (1852)
Q Consensus 797 e~~~~esky~ac~~--e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~l-----q~~~~~lq~kl~ 869 (1852)
-|++--|+|-.=-. -.++...||..+++---| ++.=.||-|.+.| |.++-.- .-.+..|.+=.+
T Consensus 191 A~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleH--NRFLILQGEVE~I-------A~MKPk~~~e~d~GmLEYLEDIIG 261 (1293)
T KOG0996|consen 191 AFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEH--NRFLILQGEVEQI-------AMMKPKAQTENDEGMLEYLEDIIG 261 (1293)
T ss_pred hhhCCCceEeECCccccHHHHHHHHHhcCCCCcc--ceeeeehhhHHHH-------HhcCCCCCCCCcchHHHHHHHHhc
Confidence 47777788865432 246788999999887665 4555677666654 3333211 123333333211
Q ss_pred HhhhhccccccccccccccccccccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHhHhhhhcccchhhHH-
Q 000211 870 DMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQ---KIRQLMQEKKALIDEKDRAEMSFSKSESDIV- 945 (1852)
Q Consensus 870 ~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~---kil~l~~ek~~l~~e~d~~~~~~~~aes~~~- 945 (1852)
.+-|-+. +...|-+++-|-+..-+ .+-....||++|+..+..|-.++.+ |-++.
T Consensus 262 --T~ry~~~-------------------I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~k-enel~~ 319 (1293)
T KOG0996|consen 262 --TNRYKEP-------------------IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKK-ENELFR 319 (1293)
T ss_pred --ccccchh-------------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHH
Confidence 1123222 23344455555443333 3445678999999988888766654 34443
Q ss_pred HHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhc
Q 000211 946 LVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLK 984 (1852)
Q Consensus 946 ~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k 984 (1852)
.+-+-|++=+.....|+.--.+.++++.-.+..++-||.
T Consensus 320 ~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~ 358 (1293)
T KOG0996|consen 320 KKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFD 358 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 444556666667777777777777777778877777777
No 24
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.85 E-value=0.22 Score=63.36 Aligned_cols=421 Identities=24% Similarity=0.278 Sum_probs=216.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhh
Q 000211 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1852)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk 1276 (1852)
....-..+.|.+.-..+..-+++.-+.+++-...-++|++++..++....+|.+=|..+.---+.++-....|+-.|..+
T Consensus 310 ~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkk 389 (786)
T PF05483_consen 310 STQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKK 389 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33444455566665556666666666666666777889999998888888877655544333333333333333333333
Q ss_pred hhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000211 1277 HCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYST 1356 (1852)
Q Consensus 1277 ~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~S 1356 (1852)
-+.|. +-+..-.+=.-+|.+|++.+...+ .+.-.+.|++.-.++|.+-=...
T Consensus 390 s~ele---------------------------Emtk~k~~ke~eleeL~~~L~e~q-kll~ekk~~eki~E~lq~~eqel 441 (786)
T PF05483_consen 390 SSELE---------------------------EMTKQKNNKEVELEELKKILAEKQ-KLLDEKKQFEKIAEELQGTEQEL 441 (786)
T ss_pred hHHHH---------------------------HHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 111111111223334443333322 34444445554444444443333
Q ss_pred hhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHH-------HHHHHHHHHHHhhHhhhhchhhhhhchhhhhhh
Q 000211 1357 DRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLD-------TLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1852)
Q Consensus 1357 kk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~-------eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1852)
.+.+---+++..|.+..|..-.-+|-.|.+.+++|-+-+. +|-+-......+|+.+.-.-..|..++.... .
T Consensus 442 ~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~q-e 520 (786)
T PF05483_consen 442 TGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQ-E 520 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-H
Confidence 4444444555555555555555555555555554444332 1112222333344444444444555554221 1
Q ss_pred hHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHh--hhHHHhcc--ccchhHHHHHHH
Q 000211 1430 AETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAE--QHAQVISS--EGYIDEQKMLQN 1505 (1852)
Q Consensus 1430 ~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e--~~~~i~~~--~~~~~el~~l~~ 1505 (1852)
+.+.. .-.++ ++-.+|+.|.+-=+.+- ..|-.-|+++..+.--++.||+. ..++++.+ -+-.-.+..|.+
T Consensus 521 di~~~-k~qee--~~~kqie~Lee~~~~Lr---neles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~len 594 (786)
T PF05483_consen 521 DINNS-KKQEE--KMLKQIENLEETNTQLR---NELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILEN 594 (786)
T ss_pred HHHHH-HHHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHH
Confidence 11111 11111 12222322222111111 33445677777777777777765 44455555 445556788889
Q ss_pred HhHHHHHHHHHHHhhhhhhcchhhhhHH-------hhhhhhHHHHhhhhhcccCCCcchhhhhhHHHHHHHHhHHHHHHh
Q 000211 1506 QCNELRRKLSEQILKTEEFRNLSIHLKE-------LKDKADAECLKLHEKRESEGLPTGMQESLRIAFIKEQCETKVQEL 1578 (1852)
Q Consensus 1506 ~~~eltqklseqilkteefknlsihlke-------lkdkaeaec~~~~ek~e~eg~~~amqeslriafikeqyetklqel 1578 (1852)
.||-|..... |-+..+.+ ||-+--||-. .+ .+|+.+|-.|
T Consensus 595 k~~~LrKqvE----------nk~K~ieeLqqeNk~LKKk~~aE~k-------------------q~----~~~eikVn~L 641 (786)
T PF05483_consen 595 KCNNLRKQVE----------NKNKNIEELQQENKALKKKITAESK-------------------QS----NVYEIKVNKL 641 (786)
T ss_pred HHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHH-------------------HH----HHHHHHHHHH
Confidence 9999887554 33334444 3333333211 11 4799999999
Q ss_pred hhhhccchhhhHHHHHHHHHhh-----------hHHhhhhhhhhhhhhhhhhhh----hhHHHHHHHHhhhhhhhhhhhh
Q 000211 1579 KHHLSISKKHSEEMLWKLQDAI-----------DEIENRKKSEAAHLKKNEELG----VKILELEAELQSLISDKREKTK 1643 (1852)
Q Consensus 1579 k~qlsisKkhsEeml~KLqdai-----------de~e~rkKse~~~~K~~eEL~----~kilElEaelq~~~sdKRe~~~ 1643 (1852)
+--+-=-|++-+||.-++|.-| +||+..|-.=.--+|--+|-. -||.+|=|=|--- -.
T Consensus 642 ~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKH-------K~ 714 (786)
T PF05483_consen 642 QEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKH-------KH 714 (786)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------HH
Confidence 9999888999999999999865 345555543333333334433 3565555444211 24
Q ss_pred hhHhhhhhhhccccchhhhHHHHHH-HHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 000211 1644 AYDLAKAELECSLMSLECCKEEKEK-LEVSLHECNEEKSRLYSDLSLMKKLLYS 1696 (1852)
Q Consensus 1644 aYD~~kae~eCsl~sleCCkeEKqk-lEasL~eC~eE~~ki~~el~~~keLle~ 1696 (1852)
-||.|.-|-+--| ++-=-||.-|- ..+||. -|-+.+..||.++|+=|+.
T Consensus 715 qYDkiVEEkDaEL-~~~k~KE~E~~s~k~sLE---~ELs~lk~el~slK~QLk~ 764 (786)
T PF05483_consen 715 QYDKIVEEKDAEL-GLYKKKEQEQSSHKASLE---LELSNLKNELSSLKKQLKT 764 (786)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 6999998876432 22222332221 222332 3567778888888876653
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.80 E-value=0.19 Score=62.59 Aligned_cols=315 Identities=16% Similarity=0.195 Sum_probs=167.4
Q ss_pred hhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHH-H------HHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHH
Q 000211 1015 SSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA-L------MVALQDKSEESVKLALEVDSFKQSFQSLHDELLVE 1087 (1852)
Q Consensus 1015 ~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a-l------~~slqdK~ees~~~~~El~slK~s~qSLhdEl~ae 1087 (1852)
-+-....+.-+.+|.+|..||.+++.-++-+.++.-+ + +.+++...+..-.|..||.-+|+++.|.|---.-.
T Consensus 119 e~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eA 198 (522)
T PF05701_consen 119 ESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEA 198 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667788889999999999999888877665432 2 33445555556667788888888888875321111
Q ss_pred HHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhh
Q 000211 1088 RSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDE 1167 (1852)
Q Consensus 1088 rsl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~e 1167 (1852)
.+.-..+..+.+.. .......++.+...+..|...- ...++|.-+
T Consensus 199 -------eee~~~~~~~~~~~--------------~~~~~~~leeae~~l~~L~~e~--------------~~~k~Le~k 243 (522)
T PF05701_consen 199 -------EEERIEIAAEREQD--------------AEEWEKELEEAEEELEELKEEL--------------EAAKDLESK 243 (522)
T ss_pred -------HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 11011111111111 1111111111221111111111 011111122
Q ss_pred hhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHh
Q 000211 1168 LHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQS 1247 (1852)
Q Consensus 1168 L~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~S 1247 (1852)
|.....+...|| .++...+...+..+.+--.....+...+.++..+=......|+.-+++.+.+...+..|+..|..
T Consensus 244 L~~a~~~l~~Lq---~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 244 LAEASAELESLQ---AELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 12222222222222233334444445555555555566666666666666666666666666666
Q ss_pred HHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhh
Q 000211 1248 LRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHEL 1327 (1852)
Q Consensus 1248 l~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~ 1327 (1852)
...++..++-=-....+.|..|..+|+..+..|...-.-. ..-+.... ++...|.++..-
T Consensus 321 ~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e---~~~k~~~~-----------------~l~~~Lqql~~E 380 (522)
T PF05701_consen 321 EKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE---EKAKEAMS-----------------ELPKALQQLSSE 380 (522)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh---cchhhhHH-----------------HHHHHHHHHHHH
Confidence 6666666665555677778888888877766552221000 11222223 333333333332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHH
Q 000211 1328 LLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARL 1391 (1852)
Q Consensus 1328 l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL 1391 (1852)
+..+ -....-....+..++..+.-++-.+..+..+++-|..+++.-+++|+--+....-|
T Consensus 381 ae~A----k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 381 AEEA----KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 12233345677888899999999999999999999999999999998766655444
No 26
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.75 E-value=6.1e-06 Score=105.90 Aligned_cols=624 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhc
Q 000211 938 SKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSK 1017 (1852)
Q Consensus 938 ~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~ 1017 (1852)
...|..+..||+||.-.+..+.+.++.-.-.-.+|..+-..+- ....||.+.|+.+-..-......
T Consensus 116 ~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~--------------~e~~dL~~~l~~~~k~k~~~Ek~ 181 (859)
T PF01576_consen 116 LQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLE--------------AELDDLQAQLDSLQKAKQEAEKK 181 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHhH
Confidence 4557788899999988888777666553333333322211111 11122222222222222222222
Q ss_pred cHHHHHHHHhhhhHHHhhhhhh----hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhh
Q 000211 1018 NRDLAQEILALQVVTEEFDRSK----QTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDD 1093 (1852)
Q Consensus 1018 n~~l~~~i~~l~~v~~E~~~tK----~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~ed 1093 (1852)
++.+-..|.++.+-..|.++.. ....-|..||-.|...+.|..-....+.....+|..-+.-+.+.+..+-..+..
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 2222222222222222222211 122345556666666666665555555555555555555566666666666666
Q ss_pred hHhhHhhhhhhhhhhhhhhhhhhHhhHHHH---HHHHhhhHhhhhhHHh-hhhhh---HHHH-HHHHHHHhHhhhhhhhh
Q 000211 1094 LKSAVSDITSQLSAKHSQLLDFDQQKSELI---QKTAVLTKENQDLMVS-LQNKS---EEAA-KLAVELDSVRNSLQSVH 1165 (1852)
Q Consensus 1094 l~~~vsdLaSEL~eK~~sL~sfd~enqeLl---~~~~~dlEea~sl~~~-Lls~s---Ee~~-k~A~t~~q~e~~lqeL~ 1165 (1852)
+...+..+-.+++.++.++..-..-+..|. .+....+....+.... ...+. +++. ++.-.+.-+...++++.
T Consensus 262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~ 341 (859)
T PF01576_consen 262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN 341 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677766666665555555552 2222222222221111 11111 1111 11122222333333333
Q ss_pred hhhhccccchHHHHhhhhhhHHHHHHHHHhh-------hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccc
Q 000211 1166 DELHGERSLSDELKSRAIDISSQLNEKQQQL-------IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEG 1238 (1852)
Q Consensus 1166 ~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e-------~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~ 1238 (1852)
.....+.+..-.|+.-..|+...|....+.= ..|+...++|-...+.+. .++.....+.+.+..++
T Consensus 342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~-------~e~d~~q~e~r~~~te~ 414 (859)
T PF01576_consen 342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ-------AERDAAQREARELETEL 414 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHH
Confidence 3333333333333333333333333322211 123333333333333222 22222223335555666
Q ss_pred cchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhh
Q 000211 1239 NTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQ 1318 (1852)
Q Consensus 1239 ~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls 1318 (1852)
..|+..|..+.+.+..+..-+-.|...+.+|++++++- +..+.-|.+....|+.++. .|.
T Consensus 415 ~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~----------~k~v~eLek~kr~LE~e~~----------El~ 474 (859)
T PF01576_consen 415 FKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDA----------GKSVHELEKAKRRLEQEKE----------ELQ 474 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh----------ccchHHHHHHHHHHHHHHH----------HHH
Confidence 66666666666666666555555555555665555543 3334555666666666665 344
Q ss_pred HHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHH----HHH
Q 000211 1319 SELSEMHELLLA-------VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQC----NEE 1387 (1852)
Q Consensus 1319 ~hL~El~e~l~A-------~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~----~ke 1387 (1852)
.+|.|+-+.+.+ ..|-+-=.|.+|+-.+++ -+--+++.-+.++-.+..+...+-.|... ...
T Consensus 475 ~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~e-------KeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~ 547 (859)
T PF01576_consen 475 EQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQE-------KEEEFEETRRNHQRQLESLEAELEEERKERAEALRE 547 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444455443333 333344444455444432 33345555555665556665555444332 344
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhh
Q 000211 1388 NARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMM 1467 (1852)
Q Consensus 1388 NaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~ 1467 (1852)
...|..-|+.|+.-|+.+..-+-........+.+++.+.-..++.......+ +...+.-+..-+..++.+++.+..
T Consensus 548 kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~----~~~~~~~~e~r~~~l~~elee~~~ 623 (859)
T PF01576_consen 548 KKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREE----LREQLAVSERRLRALQAELEELRE 623 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888887776555555554444444444333222221111111 111111222223334444444444
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHhccccchh----HHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHH
Q 000211 1468 SREELEIKVVVLKAKLAEQHAQVISSEGYID----EQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECL 1543 (1852)
Q Consensus 1468 ~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~----el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaeaec~ 1543 (1852)
..+.++=---.+.+-+++.+.+|..+-.+.. +...|......|.-.|-| ....++
T Consensus 624 ~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE-----------------~~~~~~---- 682 (859)
T PF01576_consen 624 ALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEE-----------------EQSEAE---- 682 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH----
Confidence 4444443333444444444444433322221 122222222222222221 111111
Q ss_pred hhhhhcccCCCcchhhhhhHHHHHHHHhHHHHHHhhhhhccchhhhHHHHHHHHHhhhHHhhhhhhhhhhhhhhhhhhhh
Q 000211 1544 KLHEKRESEGLPTGMQESLRIAFIKEQCETKVQELKHHLSISKKHSEEMLWKLQDAIDEIENRKKSEAAHLKKNEELGVK 1623 (1852)
Q Consensus 1544 ~~~ek~e~eg~~~amqeslriafikeqyetklqelk~qlsisKkhsEeml~KLqdaide~e~rkKse~~~~K~~eEL~~k 1623 (1852)
.+=+|..+- ++.=+.|+.-...| |...+++---|+.-|.=+--||.-|+|.|+.-..-. -+-+--|..|
T Consensus 683 ~~~ek~kka---~~~~~~l~~eL~~E------q~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~--k~~i~kLE~r 751 (859)
T PF01576_consen 683 AAEEKAKKA---QAQAAQLAEELRQE------QDHNQHLEKEKKALERQVKELQARLEEAEQSALKGG--KKQIAKLEAR 751 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHh---HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccHHHHHhHH
Confidence 111111110 11111222222233 345556777788888888889999999887432211 1134457889
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh
Q 000211 1624 ILELEAELQSLISDKREKTKAY 1645 (1852)
Q Consensus 1624 ilElEaelq~~~sdKRe~~~aY 1645 (1852)
|-+||.+|..=-..+-+-.+++
T Consensus 752 i~eLE~~Le~E~r~~~~~~k~~ 773 (859)
T PF01576_consen 752 IRELEEELESEQRRRAEAQKQL 773 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876554444444433
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.69 E-value=0.013 Score=66.90 Aligned_cols=291 Identities=21% Similarity=0.301 Sum_probs=159.8
Q ss_pred hhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhHHH-hhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhh
Q 000211 1198 DFDQQNSEMIQKIAE---LTSENQALMVSLQEYAEE-SSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1852)
Q Consensus 1198 e~~~enSeL~~~~~~---L~~en~a~mv~L~d~kee-~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skL 1273 (1852)
+...+|..|.+||+. |..+|..+-..+...+.. +....+.-......|..++..|+....-+..++..+..+...+
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 345677788888877 577888888888777755 3444555566667777777777777777777777766666666
Q ss_pred hhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhh----hhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 000211 1274 NEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRAS----EESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEEL 1349 (1852)
Q Consensus 1274 dEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~----~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL 1349 (1852)
++.+..+.. ......+++..+.... ..+-.--.|..++.-|+ -.+.|.+..|+..+.+|
T Consensus 85 ~~~r~k~e~----------e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~-------eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 85 EDLRRKYEE----------ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK-------EELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH-------HHHHHHHhhhhhhhhhh
Confidence 665554421 1222223332222111 00000001222222221 22345555555555555
Q ss_pred HHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhh
Q 000211 1350 VQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1852)
Q Consensus 1350 ~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1852)
..|+. +. +.-++... ....|...|.+++++.++.+..+|.=+.++= ...+++-.
T Consensus 148 ~~~~~-~~------------~~~e~~~~---------~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y--~~k~~~l~-- 201 (312)
T PF00038_consen 148 REQIQ-SS------------VTVEVDQF---------RSSDLSAALREIRAQYEEIAQKNREELEEWY--QSKLEELR-- 201 (312)
T ss_dssp STT--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--
T ss_pred hhccc-cc------------cceeeccc---------ccccchhhhhhHHHHHHHHHhhhhhhhhhhc--cccccccc--
Confidence 54443 11 00111111 1233888888999999888888775433221 12222222
Q ss_pred hHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHH
Q 000211 1430 AETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNE 1509 (1852)
Q Consensus 1430 ~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~e 1509 (1852)
.........-.....|+..++.-+.++..+|+.|...++.+|=.+.-|...++.. .+.+...+..+..+..+
T Consensus 202 --~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~------~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 202 --QQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE------REEYQAEIAELEEELAE 273 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH------HHHHHHhhhccchhHHH
Confidence 2223334444566778888888899999999988888777777777666666655 46667778888888888
Q ss_pred HHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhh
Q 000211 1510 LRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLH 1546 (1852)
Q Consensus 1510 ltqklseqilkteefknlsihlkelkdkaeaec~~~~ 1546 (1852)
+...++.|+-.-++-=| +|=.-|+|+..-|
T Consensus 274 l~~~~~~~~~ey~~Ll~-------~K~~Ld~EIatYR 303 (312)
T PF00038_consen 274 LREEMARQLREYQELLD-------VKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHH
Confidence 88888887765444333 3334455554443
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.67 E-value=0.077 Score=66.38 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=52.8
Q ss_pred HHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHH
Q 000211 1050 RALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1852)
Q Consensus 1050 ~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1852)
|.+-.-+|-.......++.||.++..--+..+-+||..|--..++.-.+++.+.+|-+-. -.++++++.|.
T Consensus 293 r~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~---~q~~qEk~~l~ 363 (546)
T PF07888_consen 293 RSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR---SQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333333444457888999999999999999999999999888888888888888774433 34466666554
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.53 E-value=0.038 Score=63.21 Aligned_cols=293 Identities=23% Similarity=0.282 Sum_probs=155.7
Q ss_pred hhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhh
Q 000211 745 DIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESL 824 (1852)
Q Consensus 745 ~~~sl~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l 824 (1852)
+...||.-=|+||-|-..+=-+|+.|++.+ ..|..-+ ......-+..+..+-..+...+..-+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i--------------~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~ 68 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEI--------------EELREKK--GEEVSRIKEMYEEELRELRRQIDDLSK 68 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-----------HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------------HHHHhcc--cccCcccccchhhHHHHhHHhhhhHHH
Confidence 456788888999999888877877777554 4444332 122233345666788889999999999
Q ss_pred hcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHH
Q 000211 825 ENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMR 904 (1852)
Q Consensus 825 ~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~ 904 (1852)
+++.+.-++..++.+++.+|.++.+....+.+++.-+..|..-+.+. .+.
T Consensus 69 eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~------------------------------~~~ 118 (312)
T PF00038_consen 69 EKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE------------------------------TLA 118 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHH
T ss_pred HhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------------------------------hhh
Confidence 99999999999999999999999999999998888888887443332 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhh
Q 000211 905 LEVLQRNACQKIRQLMQEKKALI--DEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADK 982 (1852)
Q Consensus 905 le~~q~~~c~kil~l~~ek~~l~--~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k 982 (1852)
--.|+. +|-.|.+|...+. |+..+....-..+....+.++.-|..|+.. + |..+..+++.++.+
T Consensus 119 r~~le~----~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~---------~-L~eiR~~ye~~~~~ 184 (312)
T PF00038_consen 119 RVDLEN----QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSA---------A-LREIRAQYEEIAQK 184 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHH---------H-HHHHHHHHHHHHHH
T ss_pred HhHHHH----HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchh---------h-hhhHHHHHHHHHhh
Confidence 111111 1233333333321 333333222222244455556555555432 2 35567788888888
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhH
Q 000211 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEE 1062 (1852)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ee 1062 (1852)
.+ .+++..|..+-.++......-...+. .+-.|+ ..+-..+|.-.-+
T Consensus 185 ~~--~e~e~~y~~k~~~l~~~~~~~~~~~~-----------------~~~~E~--------------~~~r~~~~~l~~e 231 (312)
T PF00038_consen 185 NR--EELEEWYQSKLEELRQQSEKSSEELE-----------------SAKEEL--------------KELRRQIQSLQAE 231 (312)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH--------------HHHHHHHHHHHHH
T ss_pred hh--hhhhhhcccccccccccccccccccc-----------------hhHhHH--------------HHHHhhhhHhhhh
Confidence 77 46777777654443332222222222 222222 2222222222222
Q ss_pred HHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHH-HHHhhhHhh
Q 000211 1063 SVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQ-KTAVLTKEN 1133 (1852)
Q Consensus 1063 s~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~-~~~~dlEea 1133 (1852)
-..+-....+|...+..+...... -.++....++++=.++......+...-.+.+.||. ++.-++|=+
T Consensus 232 l~~l~~~~~~Le~~l~~le~~~~~---~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 232 LESLRAKNASLERQLRELEQRLDE---EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhhhhHHHHHHHHHH---HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 222222333333333333333332 23445555666677777777777777777777754 455454443
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.33 E-value=0.048 Score=68.10 Aligned_cols=204 Identities=21% Similarity=0.261 Sum_probs=148.7
Q ss_pred hhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHH-hhhHhhhhhhhhh
Q 000211 1232 SRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV-LDLESEKSRASEE 1310 (1852)
Q Consensus 1232 aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv-~DLese~S~~~~k 1310 (1852)
..+-.++.+|...|...+.++++++.+|-.++.+|.+|...|+=+. -.|+.|+..+.... -|.+.++.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~------~~h~~eI~e~~~~~~rd~t~~~r----- 240 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK------RIHKQEIEEERRKARRDTTADNR----- 240 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------hccHHHHHHHHHHHhhcccccch-----
Confidence 4466678899999999999999999999999999999998887663 35667776655443 34443333
Q ss_pred cccchh-hhHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHH--------------HHHhhchhhHHHHHhhhccHHHHH
Q 000211 1311 SSSVTS-LQSELSEMHELLLAVDVRLIFT-RTQYEAWVEELV--------------QQVYSTDRLLTELHTKNVDVETVL 1374 (1852)
Q Consensus 1311 tsefk~-Ls~hL~El~e~l~A~dvriiF~-KeQYEtkvqEL~--------------~QL~~Skk~~eElq~K~qDaedel 1374 (1852)
.+|++ |..-+.|+.+--++-+-+---. -.=|..+|++.+ .-|...+.-+..|..|+.|++
T Consensus 241 -~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE--- 316 (546)
T KOG0977|consen 241 -EYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE--- 316 (546)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc---
Confidence 34442 6666777776665533222111 223888999988 455555555566666666555
Q ss_pred HHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHh
Q 000211 1375 NSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQL 1454 (1852)
Q Consensus 1375 n~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~L 1454 (1852)
.+|.-|...|..|+..|.-=..--+..++..|.-.++|-++=+.+-..++...+-|-.+..||.--+.|
T Consensus 317 -----------~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 317 -----------SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL 385 (546)
T ss_pred -----------ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence 467888888888888776555555566677777777788888899999999999999999999999999
Q ss_pred hhccHHH
Q 000211 1455 LVGSEEE 1461 (1852)
Q Consensus 1455 L~~~eee 1461 (1852)
|.|-|+-
T Consensus 386 Legee~r 392 (546)
T KOG0977|consen 386 LEGEEER 392 (546)
T ss_pred hccccCC
Confidence 9998876
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=1.2 Score=57.73 Aligned_cols=293 Identities=17% Similarity=0.251 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhh---hcccchhhHHH-HHHHHHhhHHhhhhhhhccHHHH----HHHH
Q 000211 902 IMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEM---SFSKSESDIVL-VKQKFEHDLRNMIDKQSVSNALL----QKLQ 973 (1852)
Q Consensus 902 ~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~---~~~~aes~~~~-~kqk~e~d~~~m~~kl~~s~~l~----qklq 973 (1852)
+.++..++...=++.....++++.+..+++.-.. .+..+++++.. |+-.++- +. +++.... .|+-
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~-~k------~~~ke~~~~~~~ka~ 399 (698)
T KOG0978|consen 327 ISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEM-LK------SLLKEQRDKLQVKAR 399 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHhHHHHHHH
Confidence 3466666666666677778888888887765432 34556666555 4333332 21 1222333 3677
Q ss_pred HHHHHHhhhhccchHHHHhHhh--hhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHH
Q 000211 974 LRFEAVADKLKVSSEVEENNAQ--RHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA 1051 (1852)
Q Consensus 974 ~~~e~~~~k~k~~se~ee~y~~--~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a 1051 (1852)
.++++.-.++++..+++-.=-. .+.+...++++.+.+..+|.+++.... +..+|+..+..+..+..+.|..
T Consensus 400 ~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-------~ll~e~~t~gsA~ed~Qeqn~k 472 (698)
T KOG0978|consen 400 AETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK-------CLLSEMETIGSAFEDMQEQNQK 472 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776654433 455555668888888888877776655 6667777888888999999999
Q ss_pred HHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhH
Q 000211 1052 LMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTK 1131 (1852)
Q Consensus 1052 l~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlE 1131 (1852)
|++.+--+...-.++.+|-.+..+- ...+|.....++..+.++.+.-+-.+.-+..+..+-..|
T Consensus 473 L~~el~ekdd~nfklm~e~~~~~q~-------~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~l--------- 536 (698)
T KOG0978|consen 473 LLQELREKDDKNFKLMSERIKANQK-------HKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGL--------- 536 (698)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 9999999999999999998766554 333444444555555555555444444443333333222
Q ss_pred hhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH-------HHHHhhhhhhhhhh
Q 000211 1132 ENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLN-------EKQQQLIDFDQQNS 1204 (1852)
Q Consensus 1132 ea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln-------~~~~~e~e~~~enS 1204 (1852)
.+...+...++..+-.-+..+...+.++...++.+....+..+++-.|++...+ .---+--+.-++.+
T Consensus 537 -----t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e 611 (698)
T KOG0978|consen 537 -----TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELE 611 (698)
T ss_pred -----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333333332233334444445555555444444444444444444333 33333333334444
Q ss_pred HHHHHHHHH------hhhHHHHHHHHhHhHH
Q 000211 1205 EMIQKIAEL------TSENQALMVSLQEYAE 1229 (1852)
Q Consensus 1205 eL~~~~~~L------~~en~a~mv~L~d~ke 1229 (1852)
.|...+.-+ .+.-+.+..++.+||+
T Consensus 612 ~L~~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 612 RLKRKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 444444443 3445667788888873
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=97.28 E-value=1.3 Score=57.97 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=15.5
Q ss_pred hhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 000211 1133 NQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG 1170 (1852)
Q Consensus 1133 a~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~ 1170 (1852)
.......+....+++..+.-+..++...++++..++..
T Consensus 344 ~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 381 (895)
T PRK01156 344 KKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEE 381 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444434444444444444444333
No 33
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.22 E-value=0.00024 Score=89.82 Aligned_cols=472 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccch----hHHHHHHHHHHhHHHhhHhhh
Q 000211 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKS----EESVKLALEVDSFKQSFQSLH 1081 (1852)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~----ees~~~~~El~slK~s~qSLh 1081 (1852)
.+...+..+......|++...+++.-+..+-. -.+.|..||..+...+..-. ......+.++..|+.-++.|.
T Consensus 176 ~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~---e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~ 252 (713)
T PF05622_consen 176 RMYEELSRLVAERDELAQRCHELEKQISDLQE---EKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLR 252 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 34456677777777787777666543333222 22344556666554443322 233456678889999999999
Q ss_pred HHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhh
Q 000211 1082 DELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL--IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRN 1159 (1852)
Q Consensus 1082 dEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL--l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~ 1159 (1852)
+++...-..+++....+..+..++..+....+++-..-.+. +++-+|-+.+.+.. ...+++
T Consensus 253 ~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r-----------------~~klE~ 315 (713)
T PF05622_consen 253 EELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR-----------------ADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------------HHHHHH
Confidence 99988778888888888777777665555544333222222 22222222222222 122333
Q ss_pred hhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhcccc
Q 000211 1160 SLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGN 1239 (1852)
Q Consensus 1160 ~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~ 1239 (1852)
-++..-.+|++..-+.-.+..+..++...|.....-|.++.. ...+...++.+...+..+-..+.+...+.-....++.
T Consensus 316 ~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~-~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~ 394 (713)
T PF05622_consen 316 EVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK-ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENK 394 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444433 2234444445555555555555555555556677778
Q ss_pred chHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhh------hhhhhhh-hhcccccchHHH--HHHHHHhhhHhhhhhhh--
Q 000211 1240 TSKETLQSLRDELQSERSLRDELKNVVTDLTSQ------LNEKHCQ-LLDLDQQKSELV--QLKLLVLDLESEKSRAS-- 1308 (1852)
Q Consensus 1240 ~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~sk------LdEk~~q-L~~fd~~~~EL~--~Lk~qv~DLese~S~~~-- 1308 (1852)
+|++.+..+..+-..+..-++.|+.++..|..- +..-... -...+.-..|+. .++..+..|+.++....
T Consensus 395 ~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~ 474 (713)
T PF05622_consen 395 QLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEK 474 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666665555555554443210 1000000 011122233443 35666667777666442
Q ss_pred ---hhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHH
Q 000211 1309 ---EESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCN 1385 (1852)
Q Consensus 1309 ---~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~ 1385 (1852)
.+.+.+..|+.+|.+.... +..+++-.....+++......++++++.+++..+....-..-...+
T Consensus 475 ~e~~~~e~~~~L~~~Leda~~~-----------~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~l- 542 (713)
T PF05622_consen 475 QEESEEEKLEELQSQLEDANRR-----------KEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDSSELKQKL- 542 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccchhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-
Confidence 1224445555555544421 2233333333444444444444555555544333222100000011
Q ss_pred HHHHHHHHhHHHHHHHHHH---HHHhhHhhhhch-hhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHH
Q 000211 1386 EENARLLTSLDTLRSELDS---AIAENRVLFHEN-NSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEE 1461 (1852)
Q Consensus 1386 keNaeL~~~I~eLesELea---siaekR~L~nan-d~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eee 1461 (1852)
+.-...+.++..+++. .|.+...-.+.. ..-.++|++.=++-+.-+. -.++|+ ..-|+..|.++-+++..
T Consensus 543 ---e~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~-~~eer~--k~~lekak~vi~~Ld~k 616 (713)
T PF05622_consen 543 ---EEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMR-AMEERY--KKYLEKAKEVIKTLDPK 616 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHH-hHHHHH--HHHHHHHHHHhhccChh
Confidence 1111122233333322 111111111111 1112333322111111112 223333 34566788888887777
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhH
Q 000211 1462 IDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLK 1532 (1852)
Q Consensus 1462 id~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqklseqilkteefknlsihlk 1532 (1852)
+.. .-.| +.+|+..|.+....|-.++....+-...+.+ |.=|=+--|-|+...+-
T Consensus 617 ~~~-----~~~e--~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~---------EekLi~sa~y~~g~~~~ 671 (713)
T PF05622_consen 617 QNP-----SSPE--IQALKKQLQEKDRRIESLEKELEKSKQMREQ---------EEKLIVSAWYNLGMRLH 671 (713)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccC-----ChHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---------HHHHHHHHHHHHHHHHH
Confidence 766 2223 3478888888888887777666544433333 22233336777766554
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.20 E-value=0.43 Score=60.07 Aligned_cols=154 Identities=16% Similarity=0.269 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHH
Q 000211 966 NALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISEL 1045 (1852)
Q Consensus 966 ~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el 1045 (1852)
..-+.+|+...+.+......-.+-.+.....+.+...++..||.++..++.+....-..+..+..+..++..++. +|
T Consensus 184 ~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~---eL 260 (546)
T PF07888_consen 184 EEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEA---EL 260 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 333444444444444333222222222334456677777888888887777765555555555555555544441 11
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH
Q 000211 1046 TEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1852)
Q Consensus 1046 ~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1852)
...-+..++-++++--....+--|++.||+-|+.+.+.+.+-++....+.+.++++.+.-+.-..-|-.-..+...|
T Consensus 261 k~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql 337 (546)
T PF07888_consen 261 KQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQL 337 (546)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 12222223333333333344556778889999999999998888888888888888777665555554444555555
No 35
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.15 E-value=1.5 Score=56.17 Aligned_cols=265 Identities=19% Similarity=0.208 Sum_probs=130.1
Q ss_pred HhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHH----HHHHHHhhhhH
Q 000211 956 RNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRD----LAQEILALQVV 1031 (1852)
Q Consensus 956 ~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~----l~~~i~~l~~v 1031 (1852)
+.|+.-|-.-++-|-|-|+.-..||.||.+-----+..--.+|++.+.| +-|++.|.+-=++ =-.-+-.|.-.
T Consensus 452 dE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L---~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 452 DEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKL---QSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5677777777888889999999999999875444444445566665544 3344443331111 11112233333
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHH----H----HHHHhhhhhHhhHhhhhh
Q 000211 1032 TEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDEL----L----VERSLRDDLKSAVSDITS 1103 (1852)
Q Consensus 1032 ~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl----~----aersl~edl~~~vsdLaS 1103 (1852)
..|+.|-|.-.+. -|++|..++.+. -++..+|+++..-+ . ..|.-.+-+...|+||--
T Consensus 529 ~ae~~rq~~~~~~----sr~~~~~le~~~----------~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~ 594 (961)
T KOG4673|consen 529 QAELTRQKDYYSN----SRALAAALEAQA----------LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQ 594 (961)
T ss_pred HHHHHHHHHhhhh----HHHHHHHHHHHH----------HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444433332 133444433322 11222233322222 2 223444566667777766
Q ss_pred hhhhhhhhh----hhhhHhhHHHHHHHHhhhHhhhhhHHhh-------hhhhHHHHHHHHHHHhHhhhhhhhhhhhhccc
Q 000211 1104 QLSAKHSQL----LDFDQQKSELIQKTAVLTKENQDLMVSL-------QNKSEEAAKLAVELDSVRNSLQSVHDELHGER 1172 (1852)
Q Consensus 1104 EL~eK~~sL----~sfd~enqeLl~~~~~dlEea~sl~~~L-------ls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~ 1172 (1852)
.|.-+.++. +-|.-++-.|++-...-.-.+..++.++ +++-|.+..- |..+-.+.-
T Consensus 595 ~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~t-------------l~~~~tawe 661 (961)
T KOG4673|consen 595 TLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQET-------------LSKAATAWE 661 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH-------------HhhhhhHHH
Confidence 666665554 3355555555555544444444443332 2222222211 111111111
Q ss_pred cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHH----------HHHHhhhHHHHHHHHhHhHHHhhhhhccccchH
Q 000211 1173 SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQK----------IAELTSENQALMVSLQEYAEESSRLASEGNTSK 1242 (1852)
Q Consensus 1173 ~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~----------~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk 1242 (1852)
+.--.|-.+-.|-+++|+..+-.+ --+.-+|++. ..+|.-++.++-..+..-+++-+-+-.++..++
T Consensus 662 reE~~l~~rL~dSQtllr~~v~~e---qgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~q 738 (961)
T KOG4673|consen 662 REERSLNERLSDSQTLLRINVLEE---QGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQ 738 (961)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH---hhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111223334445556665555444 1122233332 233566777777778777777666666666666
Q ss_pred HHHHhHHHHHH
Q 000211 1243 ETLQSLRDELQ 1253 (1852)
Q Consensus 1243 ~~L~Sl~eEL~ 1253 (1852)
+.++.+++++-
T Consensus 739 eE~~~l~~r~~ 749 (961)
T KOG4673|consen 739 EEADTLEGRAN 749 (961)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 36
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.12 E-value=0.00029 Score=89.12 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHH
Q 000211 741 TAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWE 792 (1852)
Q Consensus 741 ~a~d~~~sl~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e 792 (1852)
.++.++..+-..+..+--+|.++.-+-..|.....++..+|.-|...++..+
T Consensus 176 ~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~ 227 (713)
T PF05622_consen 176 RMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLE 227 (713)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCC
Confidence 3444555555566666677777766666666666667777776666666555
No 37
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.12 E-value=1.6 Score=55.98 Aligned_cols=367 Identities=18% Similarity=0.243 Sum_probs=207.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhh
Q 000211 1034 EFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLL 1113 (1852)
Q Consensus 1034 E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~ 1113 (1852)
+++.+..++..++.++-+ .+.+-+..-..++.=+.+|+-+..+|.+-|..+..-.++++..+.-++-+|..+-..|.
T Consensus 318 ~lq~~~k~~~qlt~eKe~---~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ele 394 (786)
T PF05483_consen 318 DLQQATKTLIQLTEEKEA---QMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELE 394 (786)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH
Confidence 555556677788887744 45666778888899999999999999999999999999998888888888887766664
Q ss_pred hhhHh--hHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH
Q 000211 1114 DFDQQ--KSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLN 1190 (1852)
Q Consensus 1114 sfd~e--nqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln 1190 (1852)
.---. +.++ ++-+...+.+... ++-+..+++--.++|.+.=+.+...+-..++..-|++..|+
T Consensus 395 Emtk~k~~ke~eleeL~~~L~e~qk--------------ll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~ 460 (786)
T PF05483_consen 395 EMTKQKNNKEVELEELKKILAEKQK--------------LLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLT 460 (786)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 32211 1111 3334444443332 12222333333333333333333344445556666666666
Q ss_pred HHHHhhhhhhhhhhHHHHHHH--------------HHhhhHHHHHHHHhHhHHHh--------------hhhhccccchH
Q 000211 1191 EKQQQLIDFDQQNSEMIQKIA--------------ELTSENQALMVSLQEYAEES--------------SRLASEGNTSK 1242 (1852)
Q Consensus 1191 ~~~~~e~e~~~enSeL~~~~~--------------~L~~en~a~mv~L~d~kee~--------------aq~a~e~~~Lk 1242 (1852)
.-...+-.|...+.+|-+-++ .|.-+|..+--+..+-+-+. -...-.+..|.
T Consensus 461 ~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Le 540 (786)
T PF05483_consen 461 TIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLE 540 (786)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555544433 23333333322222222000 01111222233
Q ss_pred HHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhh--hhhhcc--cccchHHHHHHHHHhhhHhhhhhhhhhcccchhhh
Q 000211 1243 ETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKH--CQLLDL--DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQ 1318 (1852)
Q Consensus 1243 ~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~--~qL~~f--d~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls 1318 (1852)
..=.-++++|. ++|+++..+..+++.+|+.-+ .+...| -.....+..|++.|+-|..... -++-.|..|.
T Consensus 541 e~~~~Lrnele---s~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvE---nk~K~ieeLq 614 (786)
T PF05483_consen 541 ETNTQLRNELE---SVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVE---NKNKNIEELQ 614 (786)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHhHHHHHH
Confidence 33333333333 666677777777777766521 111111 1122233455555555544221 2334445566
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHH-
Q 000211 1319 SELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDT- 1397 (1852)
Q Consensus 1319 ~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~e- 1397 (1852)
-+=+-|+...-|++-++ .+|+++|..|..-+...++..+|+..+++- .++.-..+|+.+..+...+-..-.+
T Consensus 615 qeNk~LKKk~~aE~kq~----~~~eikVn~L~~E~e~~kk~~eE~~~~~~k---eie~K~~~e~~L~~EveK~k~~a~EA 687 (786)
T PF05483_consen 615 QENKALKKKITAESKQS----NVYEIKVNKLQEELENLKKKHEEETDKYQK---EIESKSISEEELLGEVEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 66666777777777665 469999999999999999999999988864 5566777777777766655433222
Q ss_pred ------HHHHHHHHHHhhHhhhh----chhhhh----hchhhhhhhh
Q 000211 1398 ------LRSELDSAIAENRVLFH----ENNSLI----AQSEEYKSRA 1430 (1852)
Q Consensus 1398 ------LesELeasiaekR~L~n----and~~~----AElEE~Kqr~ 1430 (1852)
-+.-=|--|||-=+||. .||.|. |||..+|.+-
T Consensus 688 vK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE 734 (786)
T PF05483_consen 688 VKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKE 734 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122444555555553 466665 4444666543
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.08 E-value=1.5 Score=54.93 Aligned_cols=318 Identities=20% Similarity=0.259 Sum_probs=148.7
Q ss_pred HHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhh
Q 000211 1024 EILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITS 1103 (1852)
Q Consensus 1024 ~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaS 1103 (1852)
.-..|.-+-.++.++|.-+. .+.-+..+...||++-|....-|+..|.........-.++
T Consensus 32 ~e~eL~~~qeel~~~k~~l~--------------~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~------ 91 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLE--------------AAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEED------ 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 33355555565655555443 3445566778888888888777666665544433222221
Q ss_pred hhhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhh
Q 000211 1104 QLSAKHSQLLDFDQQKSEL--IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSR 1181 (1852)
Q Consensus 1104 EL~eK~~sL~sfd~enqeL--l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk 1181 (1852)
....+.++ |++-........ .=.+|-+-++.|...+.++.+.+.-|+.+..++.+...-...-.+.
T Consensus 92 -----------~e~~k~r~~e~e~~~~~~~~~~-~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~ 159 (522)
T PF05701_consen 92 -----------SELAKFRAKELEQGIAEEASVA-WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQ 159 (522)
T ss_pred -----------hHHhHHHHHHHhhhhcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111111100000 1123444566666777777777777777777777776666666666
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhH-------HHhhhhhccccchHHHHHhHHHHHHH
Q 000211 1182 AIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYA-------EESSRLASEGNTSKETLQSLRDELQS 1254 (1852)
Q Consensus 1182 ~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~k-------ee~aq~a~e~~~Lk~~L~Sl~eEL~~ 1254 (1852)
..+....++...-+-.+...+...+.-.+++. +.+-.-.-+... .....+..++.+-...|..|..++.
T Consensus 160 aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~---~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~- 235 (522)
T PF05701_consen 160 AEEAVSAAEENEEKVEELSKEIIALKESLESA---KLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELE- 235 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66666666655554444444444444444443 222111111111 1112223333333333444444332
Q ss_pred hhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhh---hhhhhhcccchhhhHHHHHHHhhhhhh
Q 000211 1255 ERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEK---SRASEESSSVTSLQSELSEMHELLLAV 1331 (1852)
Q Consensus 1255 ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~---S~~~~ktsefk~Ls~hL~El~e~l~A~ 1331 (1852)
....|+.++..-...+..++.+| ...+. +++.+.. .....-...+.+....|.+++..
T Consensus 236 ---~~k~Le~kL~~a~~~l~~Lq~El----------~~~~~--~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~---- 296 (522)
T PF05701_consen 236 ---AAKDLESKLAEASAELESLQAEL----------EAAKE--SKLEEEAEAKEKSSELQSSLASAKKELEEAKKE---- 296 (522)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHH--HHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 22222222222222222222222 11111 1222211 11111112233333444444333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 000211 1332 DVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENR 1410 (1852)
Q Consensus 1332 dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR 1410 (1852)
++.....+++.....+-|...+..+-.+++.-...+....-....|...|+.++++|+++-+.-.
T Consensus 297 --------------L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 297 --------------LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 33333444444444444555555555566666666666666677788888888888888776644
No 39
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=2.1 Score=55.51 Aligned_cols=253 Identities=20% Similarity=0.183 Sum_probs=132.6
Q ss_pred HHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhh
Q 000211 949 QKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILAL 1028 (1852)
Q Consensus 949 qk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l 1028 (1852)
+.+++=+..+..++.-.....-+|...+.+-++.+--.+...+..-..-.++.+.++.+.. -+.++++..++++.-+
T Consensus 275 ~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 351 (698)
T KOG0978|consen 275 QEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSK---KLRSKLLESAKKLKIL 351 (698)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhH
Confidence 3344444444555544444454555555554444433333333333333344443333332 5566666655554433
Q ss_pred -hhHHHhhhh---hhhhHHHHHHHHHHHHHHhccchhHH-----HHHHHHHHhHHHhhHhhhHHHHHHHH--hhhhhHhh
Q 000211 1029 -QVVTEEFDR---SKQTISELTEENRALMVALQDKSEES-----VKLALEVDSFKQSFQSLHDELLVERS--LRDDLKSA 1097 (1852)
Q Consensus 1029 -~~v~~E~~~---tK~~~~el~~En~al~~slqdK~ees-----~~~~~El~slK~s~qSLhdEl~aers--l~edl~~~ 1097 (1852)
..+..|... +...-.++...|++.+..+-....+- ++.+.|++++-+-+--+.....++++ -.++.+..
T Consensus 352 ~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~ 431 (698)
T KOG0978|consen 352 LREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQ 431 (698)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 233333333 33334556666777766665544333 46999999999988888888888888 44777887
Q ss_pred HhhhhhhhhhhhhhhhhhhHhhHHH--HHHHHhhhHhhhh-hHHhhhhhhHHHHHHHHHH---H----hHhhhhhhhhhh
Q 000211 1098 VSDITSQLSAKHSQLLDFDQQKSEL--IQKTAVLTKENQD-LMVSLQNKSEEAAKLAVEL---D----SVRNSLQSVHDE 1167 (1852)
Q Consensus 1098 vsdLaSEL~eK~~sL~sfd~enqeL--l~~~~~dlEea~s-l~~~Lls~sEe~~k~A~t~---~----q~e~~lqeL~~e 1167 (1852)
..+.+++..++.....+|.+-..++ +-.-..++.+-+. ++.++--.--...++-.+. + -++....-|..+
T Consensus 432 ~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~ 511 (698)
T KOG0978|consen 432 IRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQ 511 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888777777777777333333 2222233333222 1111111111111111111 1 145555555566
Q ss_pred hhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhh
Q 000211 1168 LHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNS 1204 (1852)
Q Consensus 1168 L~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enS 1204 (1852)
.+..-..-+-++.+...++.++.++++..--.+.+-+
T Consensus 512 i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~ 548 (698)
T KOG0978|consen 512 ILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELT 548 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 6666666666666666666666666666554444333
No 40
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.98 E-value=0.0027 Score=80.64 Aligned_cols=357 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhh
Q 000211 709 GEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKL 788 (1852)
Q Consensus 709 ~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~sl~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~ 788 (1852)
.++...+.+|..|..++.-..-..+....++..++++.. .+|..-.-+++-|++.++.+...+.-+-.++
T Consensus 61 ~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~----------~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 61 AELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQ----------RQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777877777766666666666666554432 2444444678888888888877776666655
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHhHHH----HHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHH
Q 000211 789 SEWESLMMDFKSFQSKYEAIAAEKTEL----ANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNL 864 (1852)
Q Consensus 789 ~e~e~~v~e~~~~esky~ac~~e~~~l----~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~l 864 (1852)
.+. ..++.+++.+++ .++..| ..++.. .++.++.+..++..++..+..+-.-...++.-+..+
T Consensus 131 ~~~---~e~~~~~k~~le---~~~~~L~~E~~~~~~e-------~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 131 EEA---EEELEQLKRKLE---EEKRRLQREKEQLLEE-------AREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 456777777763 222222 223322 334444455555555544444444444444444444
Q ss_pred HHHHHHhh---hhcccccccccccccc-ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHh------h
Q 000211 865 QNKMHDML---SSYGESFSELCLHNKS-ADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRA------E 934 (1852)
Q Consensus 865 q~kl~~~l---~sy~~~~~~l~l~~~s-~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~------~ 934 (1852)
+..+..+. ..++..+..|.-...+ ..++-..+.+.. +.........+. .
T Consensus 198 ~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~---------------------el~~~~~~~~i~k~l~~ql 256 (722)
T PF05557_consen 198 KEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEA---------------------ELKDQESDAEINKELKEQL 256 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------HHHhHhhHHHHHHHHHHHH
Confidence 44443332 3555555554322111 111111111111 111111100000 0
Q ss_pred hhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHh
Q 000211 935 MSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQL 1014 (1852)
Q Consensus 935 ~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l 1014 (1852)
.++..-|.+...+. +=+.+|--+..-++-|..+..++-.|+..--.++++|+... -....||.++..-
T Consensus 257 ~~i~~LE~en~~l~--------~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq----~e~~~Le~el~sW 324 (722)
T PF05557_consen 257 AHIRELEKENRRLR--------EELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQ----LENEKLEDELNSW 324 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 11111222111111 11112222222333344444455555554444444444321 1223334444333
Q ss_pred hhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhh
Q 000211 1015 SSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDL 1094 (1852)
Q Consensus 1015 ~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl 1094 (1852)
++--.+.+..+..-.+|+..+..+...-+.|++++-.+...+.+....-..+..|+..+.+.+..+...+.+.......+
T Consensus 325 ~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RL 404 (722)
T PF05557_consen 325 ESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRL 404 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444455555656666666677777777777777666666667777767666666666666666666777
Q ss_pred HhhHhhhhhhhhhhhhhhhhhhHhhHH
Q 000211 1095 KSAVSDITSQLSAKHSQLLDFDQQKSE 1121 (1852)
Q Consensus 1095 ~~~vsdLaSEL~eK~~sL~sfd~enqe 1121 (1852)
+....=.+-|.+.+..+|.+||.+.+.
T Consensus 405 erq~~L~~kE~d~LR~~L~syd~e~~~ 431 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSYDKEETT 431 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 777777788888888888888876543
No 41
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.98 E-value=2.3 Score=55.26 Aligned_cols=302 Identities=22% Similarity=0.226 Sum_probs=156.1
Q ss_pred hhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhh
Q 000211 1092 DDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDEL 1168 (1852)
Q Consensus 1092 edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL 1168 (1852)
.-++...-.+-||+-+++-.++....++|.| .+...+++.++....-.+++ .||..-
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s--------------------rlh~le 154 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS--------------------RLHKLE 154 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------------------HHHHHH
Confidence 3455556666777777777777777777777 66666666666553332222 122222
Q ss_pred hccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhH
Q 000211 1169 HGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSL 1248 (1852)
Q Consensus 1169 ~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl 1248 (1852)
+ +|.-+..|+...-...-..-..+.+.+.++++.+..-..+|.++.--++.+++.+ -+-|- +.+
T Consensus 155 ~-------eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~--~~nD~---~sl---- 218 (1265)
T KOG0976|consen 155 D-------ELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDL--IEKDQ---KSL---- 218 (1265)
T ss_pred H-------HHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchH---HHH----
Confidence 2 2222333333333333445555666677777777776666666666666666541 00010 111
Q ss_pred HHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhh
Q 000211 1249 RDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELL 1328 (1852)
Q Consensus 1249 ~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l 1328 (1852)
+++...-++-++=..|+.|+++++-+.. -+.-...++.++-||+--.- .++++. --+
T Consensus 219 --e~~~~q~~tq~vl~ev~QLss~~q~ltp-------~rk~~s~i~E~d~~lq~sak-~ieE~m-------------~ql 275 (1265)
T KOG0976|consen 219 --ELHKDQENTQKVLKEVMQLSSQKQTLTP-------LRKTCSMIEEQDMDLQASAK-EIEEKM-------------RQL 275 (1265)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhHhhhhh-------HhhhhHHHHHHHHHHHHHHH-HHHHHH-------------HHH
Confidence 2333334445555667777776654411 11222344444444432221 122211 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 000211 1329 LAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAE 1408 (1852)
Q Consensus 1329 ~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiae 1408 (1852)
.|-.-++-=.+.|+|-.|-+|..-|.-.+..-..- .+|. -...+.=+ .+|-+|- --.++++-++-+
T Consensus 276 k~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a---~gds---eqatkylh----~enmklt----rqkadirc~LlE 341 (1265)
T KOG0976|consen 276 KAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA---DGDS---EQATKYLH----LENMKLT----RQKADIRCALLE 341 (1265)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh---hccH---HHHHHHHH----HHHHHHH----HHHHHHHHHHHH
Confidence 22233344455666666666555443322221110 0111 01111111 1233333 334566777778
Q ss_pred hHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhh
Q 000211 1409 NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLM 1466 (1852)
Q Consensus 1409 kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~ 1466 (1852)
-|..+++.|...-|||-..--++.-+++..+-+.--.-|+-+|+.|....+++||.|-
T Consensus 342 arrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 342 ARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998888887444444444555555555566778888888888888888764
No 42
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.94 E-value=0.28 Score=61.59 Aligned_cols=280 Identities=20% Similarity=0.277 Sum_probs=159.1
Q ss_pred hhhhhhhHHHHHHHH---HhhhHHHHHHHHhHhH-----------------------------HHhhhhhccccchHHHH
Q 000211 1198 DFDQQNSEMIQKIAE---LTSENQALMVSLQEYA-----------------------------EESSRLASEGNTSKETL 1245 (1852)
Q Consensus 1198 e~~~enSeL~~~~~~---L~~en~a~mv~L~d~k-----------------------------ee~aq~a~e~~~Lk~~L 1245 (1852)
++.++|..|..||+. |-.+|..+-..++.-+ .+.+.+--++-+|++.+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~ 122 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL 122 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455666666666665 4566666666655544 12222223333333333
Q ss_pred HhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHH
Q 000211 1246 QSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1852)
Q Consensus 1246 ~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~ 1325 (1852)
..+.-.++.-...+.+....+-+...-|+++ ..|+..+|-....|+-++.+...+++ -|-.+|..++
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~l----------eAe~~~~krr~~~le~e~~~Lk~en~---rl~~~l~~~r 189 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSEL----------EAEINTLKRRIKALEDELKRLKAENS---RLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHH
Confidence 3333333333333333344444444444444 45668999999999999997776666 6889999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchh----hHHHHHhhhccHH-HHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Q 000211 1326 ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDR----LLTELHTKNVDVE-TVLNSCLAREAQCNEENARLLTSLDTLRS 1400 (1852)
Q Consensus 1326 e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk----~~eElq~K~qDae-deln~~lksEa~~~keNaeL~~~I~eLes 1400 (1852)
..+.++.+. +.-|++.+|.|.+-|...+. -+.|.+.+.+-.- ..++...+ .+|..+|.++++
T Consensus 190 ~~ld~Etll----r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~---------~eL~~Ai~eiRa 256 (546)
T KOG0977|consen 190 KQLDDETLL----RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFK---------NELALAIREIRA 256 (546)
T ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHH---------HHHHHHHHHHHH
Confidence 888886543 34468888888888877663 2333333322111 11111111 245566666666
Q ss_pred HHHHHHHhhHhhhhchhhhhhchhhhhhhhHHh---hhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHH
Q 000211 1401 ELDSAIAENRVLFHENNSLIAQSEEYKSRAETM---ADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVV 1477 (1852)
Q Consensus 1401 ELeasiaekR~L~nand~~~AElEE~Kqr~E~~---l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~ 1477 (1852)
+-++-+..+|.=+.- -|+.++.++ ....+..-.+..-||.+++.-+.++--.+-+|-..-.-++=.+-
T Consensus 257 qye~~~~~nR~diE~---------~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~ 327 (546)
T KOG0977|consen 257 QYEAISRQNRKDIES---------WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIE 327 (546)
T ss_pred HHHHHHHHhHHHHHH---------HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHH
Confidence 666666655542221 233333222 23333344556678888888877777777766666666666666
Q ss_pred HHHHHHHhhhHHH-hccccchhHHHHHHHHhHHHHH
Q 000211 1478 VLKAKLAEQHAQV-ISSEGYIDEQKMLQNQCNELRR 1512 (1852)
Q Consensus 1478 vlk~kl~e~~~~i-~~~~~~~~el~~l~~~~~eltq 1512 (1852)
-|+..|++-+-.+ .+|..-..++..++.+|-.|-.
T Consensus 328 dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~ 363 (546)
T KOG0977|consen 328 DLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSV 363 (546)
T ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666655555 5556666777788888866543
No 43
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.55 E-value=5.1 Score=53.25 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 000211 1341 QYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAI 1406 (1852)
Q Consensus 1341 QYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasi 1406 (1852)
-+...+++++.++.--++++.++.......++.+..+ .......++...+.++.+.++..-
T Consensus 583 ~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL-----ELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666555555555666666666666666666 333344455555555544444443
No 44
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.44 E-value=5.3 Score=52.24 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=112.3
Q ss_pred ccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhh
Q 000211 1238 GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSL 1317 (1852)
Q Consensus 1238 ~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~L 1317 (1852)
+-+-..+..-+.++|++++-++.......+.-+-=|. -|...|+-+..|+-.++-++.+|.+.|...
T Consensus 286 lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh-------------~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 286 LSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH-------------LENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 3333344455555566665555444333322221111 134667888999999999999999999988
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHH
Q 000211 1318 QSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDT 1397 (1852)
Q Consensus 1318 s~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~e 1397 (1852)
...|..-++-|++ |||-|-.| +.-+..-...+.+++-+.+.-+|++.++..+=..--+- -..
T Consensus 353 ~~eLEKkrd~al~-dvr~i~e~----------k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~d-------he~ 414 (1265)
T KOG0976|consen 353 LNELEKKRDMALM-DVRSIQEK----------KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKD-------HEA 414 (1265)
T ss_pred HHHHHHHHHHHHH-hHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccch-------hHH
Confidence 8888777766665 56644322 22222233345678888888889888876543222111 112
Q ss_pred HHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhh-------hhhHHHHHHHHHhhhccHHHHhhhhhhhh
Q 000211 1398 LRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHK-------SQLALEVERMKQLLVGSEEEIDDLMMSRE 1470 (1852)
Q Consensus 1398 LesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek-------sk~a~Eve~lK~LL~~~eeeid~l~~~k~ 1470 (1852)
.+.||+.+ .+.-|.|.+++----..+++.-.=|.-.+ .||-.=|.+++.|..+++-+ -
T Consensus 415 ~kneL~~a-------~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~q--------r 479 (1265)
T KOG0976|consen 415 AKNELQEA-------LEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQ--------R 479 (1265)
T ss_pred HHHHHHHH-------HHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhh--------c
Confidence 23333333 23334444444421111222222221111 34555566666666665533 2
Q ss_pred hHHHHHHHHHHHHHhhhHHHhcc
Q 000211 1471 ELEIKVVVLKAKLAEQHAQVISS 1493 (1852)
Q Consensus 1471 e~ei~~~vlk~kl~e~~~~i~~~ 1493 (1852)
-+|.-+-.||+-+..+.+.|--+
T Consensus 480 KVeqe~emlKaen~rqakkiefm 502 (1265)
T KOG0976|consen 480 KVEQEYEMLKAENERQAKKIEFM 502 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777766665544
No 45
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.32 E-value=6.9 Score=52.36 Aligned_cols=197 Identities=20% Similarity=0.189 Sum_probs=106.9
Q ss_pred hhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhh
Q 000211 962 QSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQT 1041 (1852)
Q Consensus 962 l~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~ 1041 (1852)
+.++++..--.-++.-++--++-.+.-..+-|..-.-=-.+.=-+|+|+|--+.+|++.|-+++-+=
T Consensus 130 ~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK------------- 196 (1195)
T KOG4643|consen 130 LQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEK------------- 196 (1195)
T ss_pred HHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3444444422334444555666667777776666555555666789999999999999998887542
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH---hHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHh
Q 000211 1042 ISELTEENRALMVALQDKSEESVKLALEVD---SFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1852)
Q Consensus 1042 ~~el~~En~al~~slqdK~ees~~~~~El~---slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1852)
.+-++.+---|+|+.-+-.++-.|+. +.+.+|+.--+|+-+.+.=.+--..+-..-+-.++-.+..+.++...
T Consensus 197 ----~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelked 272 (1195)
T KOG4643|consen 197 ----FENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKED 272 (1195)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhh
Confidence 24445555556666666666665554 44667777777776655433221111111122223344455555555
Q ss_pred hHHHHHHHHhhhHhhhhhHHhhhhhhHHH--HHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhh
Q 000211 1119 KSELIQKTAVLTKENQDLMVSLQNKSEEA--AKLAVELDSVRNSLQSVHDELHGERSLSDELKSRA 1182 (1852)
Q Consensus 1119 nqeLl~~~~~dlEea~sl~~~Lls~sEe~--~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~ 1182 (1852)
|++| +++..-+--+|..++... +.+-++.++|...+..+.-+..-.++..++||--|
T Consensus 273 N~vL-------leekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 273 NRVL-------LEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred hHHH-------HHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5555 333333333333333222 34445666666666665555555554444444333
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.26 E-value=0.77 Score=56.47 Aligned_cols=224 Identities=14% Similarity=0.202 Sum_probs=121.7
Q ss_pred hhhhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcC
Q 000211 299 NRLRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCH 378 (1852)
Q Consensus 299 n~~Re~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~ 378 (1852)
..+++....++..+..|+.++..++.+.+....-+..++++... .-+++-.++..+..++..++.++++++.--.-+
T Consensus 170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~---~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999888887777777767666542 234555555555555555555555554433221
Q ss_pred CCC--c----hHHhhhhhcccCCCcccccccchhhhhhhhhhhhhcccccccCCccccccCCccccccc-cCCCcccccc
Q 000211 379 PFT--S----WEAVKQGTEITMSTPNLVTCDRSKVNEIGEISLNKYEQYLSGTGLETELYQPDLDMLHC-VGIPALASHE 451 (1852)
Q Consensus 379 ~~a--~----~eelkqel~~t~s~~eli~~E~~~vqdl~em~l~k~e~~~~~s~sd~d~~q~~L~mL~~-l~~~~lvske 451 (1852)
+.. + +..+.....+ ++. +....+.++.+++. ...|.-- ..
T Consensus 247 ~~~i~~~~~~L~~l~~~~~~-----------------~~~---------------~l~~~~~~~~~~~~~~~Cp~C~-~~ 293 (562)
T PHA02562 247 VMDIEDPSAALNKLNTAAAK-----------------IKS---------------KIEQFQKVIKMYEKGGVCPTCT-QQ 293 (562)
T ss_pred hcccccHHHHHHHHHHHHHH-----------------HHH---------------HHHHHHHHHHHhcCCCCCCCCC-Cc
Confidence 110 0 1111111110 000 00001111111100 0000000 11
Q ss_pred cCC-CCCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHH
Q 000211 452 HSS-VNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKA 530 (1852)
Q Consensus 452 ~~~-a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Lea 530 (1852)
..+ ......+.+.|-+|..+++.+.....+++..+++ |..+..++.+.+ ..+...+...+++...+..+++
T Consensus 294 ~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~----~~~~~~~i~el~----~~i~~~~~~i~~~~~~~~~l~~ 365 (562)
T PHA02562 294 ISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE----FNEQSKKLLELK----NKISTNKQSLITLVDKAKKVKA 365 (562)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2334556666666666666666666666665553 444444433321 2455566777778888899999
Q ss_pred HHHHHHHH---HHHHHHHHhhhHhHHHhhhHHHHHhhhh
Q 000211 531 EIEAMRLD---VDEQVLRFSEERRDLESLNKELERRAVS 566 (1852)
Q Consensus 531 qve~Leee---l~~Q~~rF~edl~al~~~kvEqEqRAI~ 566 (1852)
.|++|+.. ++....+..++++.+...+.+.++..-.
T Consensus 366 ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 366 AIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999765 4466777777888877777777665443
No 47
>PRK01156 chromosome segregation protein; Provisional
Probab=96.20 E-value=7.3 Score=51.38 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHH
Q 000211 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISEL 1045 (1852)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el 1045 (1852)
.+..++..+..+..++......+.....++...+..+..+
T Consensus 343 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 382 (895)
T PRK01156 343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEY 382 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444443
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=9.9 Score=51.73 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=47.5
Q ss_pred chhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhh
Q 000211 1356 TDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH 1414 (1852)
Q Consensus 1356 Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~n 1414 (1852)
|+-..+.+...+++..+..+.+....-.+-++-..|...|.+|+..|+...++-..+..
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~ 834 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAE 834 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH
Confidence 44477888899999999999999888888888888999999998888877777444433
No 49
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.01 E-value=9.3 Score=50.90 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=31.1
Q ss_pred hhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 000211 1159 NSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL 1213 (1852)
Q Consensus 1159 ~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L 1213 (1852)
+-++++.............++.....+++.+..+ +..+..+++...+..|
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~~~~e~~~~~~~l 635 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSL-----ELSEAENELEEAEEEL 635 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHH
Confidence 5556666555555666777777777777777777 4444445555555554
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.84 E-value=1.9 Score=56.12 Aligned_cols=158 Identities=32% Similarity=0.367 Sum_probs=110.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhh--------------hhhchhhhhhhhHHhhhh
Q 000211 1371 ETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNS--------------LIAQSEEYKSRAETMADN 1436 (1852)
Q Consensus 1371 edeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~--------------~~AElEE~Kqr~E~~l~~ 1436 (1852)
++.|.-+...|+.|+.+..+|.+-|--++.++..+.+|+--|...+.. |+.|+.|+|.|-.-.+++
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556666666666666666666666666666666665554444433 355666999998888898
Q ss_pred hhhhh-------------hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHH
Q 000211 1437 YGEHK-------------SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKML 1503 (1852)
Q Consensus 1437 ~~Eek-------------sk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l 1503 (1852)
|+|=- .+-.||++-||+=+..++|+|+-|..--+|+.-.-.|....|+|.- .=|..=
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEAL----------esl~~E 168 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEAL----------ESLKSE 168 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 88621 2356899999999999999999999999998877777777777761 112233
Q ss_pred HHHhHHHHHHHHHHHhhhhh---hcchhhhhHHhhhhhh
Q 000211 1504 QNQCNELRRKLSEQILKTEE---FRNLSIHLKELKDKAD 1539 (1852)
Q Consensus 1504 ~~~~~eltqklseqilktee---fknlsihlkelkdkae 1539 (1852)
++|-+.|.+-|+. -+..+. |.||.|+|+-++...+
T Consensus 169 Reqk~~LrkEL~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (717)
T PF09730_consen 169 REQKNALRKELDQ-HLNIESISYLSNLAISLDGLKFSED 206 (717)
T ss_pred HHHHHHHHHHHHH-hcCccccccccchhhcccccccccc
Confidence 4566666666653 344455 6889999999977664
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.75 E-value=8.9 Score=48.72 Aligned_cols=188 Identities=16% Similarity=0.261 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhh----hhhHhhHhhhhhhhh--------
Q 000211 1039 KQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR----DDLKSAVSDITSQLS-------- 1106 (1852)
Q Consensus 1039 K~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~----edl~~~vsdLaSEL~-------- 1106 (1852)
...+......=+.+...+++=.+.-.+...+++.||.-++.+...+.+-+-.- +.++..++.+-.+.+
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~ 190 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTES 190 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333444444444444444444445556677777777777777776655433 333333333332222
Q ss_pred ----hhhhhhhhhhHhhHHH---HHHHHhhhHhhhh-hHHhhhhhhHHHHHHH-----HHHHhHhhhhhhhhhhhhccc-
Q 000211 1107 ----AKHSQLLDFDQQKSEL---IQKTAVLTKENQD-LMVSLQNKSEEAAKLA-----VELDSVRNSLQSVHDELHGER- 1172 (1852)
Q Consensus 1107 ----eK~~sL~sfd~enqeL---l~~~~~dlEea~s-l~~~Lls~sEe~~k~A-----~t~~q~e~~lqeL~~eL~~~~- 1172 (1852)
.-+..+.....+...| |..+=....+... +-.+|..++.-+++.. |+-..+..-|+.+..++....
T Consensus 191 Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 191 GDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 1122233333333333 4444333444333 3355555555555443 333334444444444444322
Q ss_pred -----------cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhH
Q 000211 1173 -----------SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQE 1226 (1852)
Q Consensus 1173 -----------~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d 1226 (1852)
...+.++....++-+.|..-...=-........+...+..+...|..+..++..
T Consensus 271 ~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~ 335 (569)
T PRK04778 271 LLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR 335 (569)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444455555555556666665555543
No 52
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.60 E-value=0.027 Score=71.99 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=0.0
Q ss_pred ccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh
Q 000211 1238 GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA 1307 (1852)
Q Consensus 1238 ~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~ 1307 (1852)
+-.|.....-+..|+..+|..+.. |..|+.+....+..|..++.-..+|..++-++..|+.++..-
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n----~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQEN----VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666667666666554 566777777777777777777778888888888888777643
No 53
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.41 E-value=16 Score=49.29 Aligned_cols=211 Identities=19% Similarity=0.175 Sum_probs=120.0
Q ss_pred hHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHh--hh
Q 000211 1156 SVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEES--SR 1233 (1852)
Q Consensus 1156 q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~--aq 1233 (1852)
-|++-+..|+.+.- +++ .+|.+-.--..++-++-++.-+-|.- |..++.-+-.+|+-++-++ +-
T Consensus 233 ~yrdeldalre~ae--r~d-----~~ykerlmDs~fykdRveelkedN~v-------LleekeMLeeQLq~lrarse~~t 298 (1195)
T KOG4643|consen 233 RYRDELDALREQAE--RPD-----TTYKERLMDSDFYKDRVEELKEDNRV-------LLEEKEMLEEQLQKLRARSEGAT 298 (1195)
T ss_pred hhhhHHHHHHHhhh--cCC-----CccchhhhhhHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHhccccCC
Confidence 35555555554432 222 33333333333444444444444433 3444444555677676444 77
Q ss_pred hhccccchHHHHHhHHHHHHHhhhhHHHhhH---HHHHhhhhhhhhhhhhhcc-cccchHHHHHHHHHhhhHh--hhh-h
Q 000211 1234 LASEGNTSKETLQSLRDELQSERSLRDELKN---VVTDLTSQLNEKHCQLLDL-DQQKSELVQLKLLVLDLES--EKS-R 1306 (1852)
Q Consensus 1234 ~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~---tV~~L~skLdEk~~qL~~f-d~~~~EL~~Lk~qv~DLes--e~S-~ 1306 (1852)
+-+++++|+..|.-+..+.+..|.=-++|.- |..+-+.+|+--...+-.| .....|=.-+...+.+||+ .+- .
T Consensus 299 leseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkll 378 (1195)
T KOG4643|consen 299 LESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLL 378 (1195)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHH
Confidence 7889999999999999999999888777754 4455556666665555454 3334455567777888887 111 0
Q ss_pred h----------hhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHH
Q 000211 1307 A----------SEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNS 1376 (1852)
Q Consensus 1307 ~----------~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~ 1376 (1852)
+ .+.+++|..+=+.-.+|+. +-=++----++.+..++.+.+|+--+....-.++..+-.+.+++.+
T Consensus 379 LEnrrlt~tleelqsss~Ee~~SK~lelek----e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 379 LENRRLTGTLEELQSSSYEELISKHLELEK----EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHhHHHHHHHHHHhhhhHHHHHHHHHHHHH----HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2445555544444444432 1123334457889999999999887766555555544444444444
Q ss_pred hhhhhhHH
Q 000211 1377 CLAREAQC 1384 (1852)
Q Consensus 1377 ~lksEa~~ 1384 (1852)
+-.+=.++
T Consensus 455 ~~~s~~rq 462 (1195)
T KOG4643|consen 455 VTRSLSRQ 462 (1195)
T ss_pred HHHhHHHH
Confidence 44333333
No 54
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.36 E-value=18 Score=49.64 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=77.4
Q ss_pred hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHH
Q 000211 954 DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTE 1033 (1852)
Q Consensus 954 d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~ 1033 (1852)
|++.-.+...-+++-+-.++..++....-+.+-++-.-+..-++.|+-. ++|.+-+.|++++..+..|...-.
T Consensus 526 ~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~-------~iq~~~e~~~~~~d~l~~le~~k~ 598 (1317)
T KOG0612|consen 526 DAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSK-------QIQQELEENRDLEDKLSLLEESKS 598 (1317)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhH-------HHHHHhhccccHHHHHHHHHHHHH
Confidence 3444445555556666677777777776677666666666666666543 456666699999999888876654
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHh
Q 000211 1034 EFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL 1090 (1852)
Q Consensus 1034 E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl 1090 (1852)
.|.++|+-+...+.--.+--..+..++..+++.+.||...+.+....
T Consensus 599 ----------~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 599 ----------KLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 44555555555554444555666677777888888777666554433
No 55
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=12 Score=47.53 Aligned_cols=134 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH
Q 000211 910 RNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV 989 (1852)
Q Consensus 910 ~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ 989 (1852)
+++.+-=|.|.+||.+|..-++-.+.-.+.+.+++--.|+-|-. .+---.|...++.- += +. -+.-|+--
T Consensus 32 ~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q-~~s~hkk~~~~g~e--~E----es---LLqESaak 101 (772)
T KOG0999|consen 32 IQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQ-YRSQHKKVARDGEE--RE----ES---LLQESAAK 101 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccchh--hH----HH---HHHHHHHh
Confidence 34445556677777777776666666666666666666655431 11111111111110 00 00 11224445
Q ss_pred HHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhh--HHHhhhh--hhhhHHHHHHHHHHHH
Q 000211 990 EENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQV--VTEEFDR--SKQTISELTEENRALM 1053 (1852)
Q Consensus 990 ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~--v~~E~~~--tK~~~~el~~En~al~ 1053 (1852)
|+-|-++-.+|--.|.+++.+|-...++|+-|.++-.++-. .+.|.+| +|--+.++...-.+|+
T Consensus 102 E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888887776655532 2333433 3434444444444443
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.30 E-value=14 Score=47.97 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHH
Q 000211 968 LLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTE 1047 (1852)
Q Consensus 968 l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~ 1047 (1852)
-++.|+.+++.++.++.+-.+-.+.++..+.+--.+|..+|..++.+.. ..-+.....+.+..-|.|++--..
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e-------~~~D~~kLLe~lqsdk~t~SRAls 160 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE-------QQEDRQKLLEQLQSDKATASRALS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcccchHHHHHHH
Confidence 4567888888888888766555555665555555666666666655444 334444555556666777877777
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH
Q 000211 1048 ENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1852)
Q Consensus 1048 En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1852)
-|+.|=--|-.=-+.-++|.++--.|+..+|+..--...+..-..++..++..+--.+-.|..-++++..++.++
T Consensus 161 QN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 161 QNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777654333333334556666655555555543332222222223444555555555555555555555555444
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.05 E-value=21 Score=48.61 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHh---hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHh
Q 000211 918 QLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEH---DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNA 994 (1852)
Q Consensus 918 ~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~---d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~ 994 (1852)
.++.|-++--.|+.-++..+.++.+++..+|-+|-+ +++.....+++=+..+..++ +
T Consensus 327 ~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~--------------------~ 386 (1074)
T KOG0250|consen 327 ELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE--------------------K 386 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------H
Confidence 345555555666666777777777777777766632 33333333332222222222 2
Q ss_pred hhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHH
Q 000211 995 QRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFK 1074 (1852)
Q Consensus 995 ~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK 1074 (1852)
+.|+++.+.++++|.++..|..+++++-..| +.|.+|-+.++..+-+..++-..+-.++.+|.
T Consensus 387 ~~~~~~~~~~~e~e~k~~~L~~evek~e~~~-----------------~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 387 QTNNELGSELEERENKLEQLKKEVEKLEEQI-----------------NSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3489999999999999998888777765522 44555666666677777778888888888888
Q ss_pred HhhHhhhHHHHHHHHh
Q 000211 1075 QSFQSLHDELLVERSL 1090 (1852)
Q Consensus 1075 ~s~qSLhdEl~aersl 1090 (1852)
.+.+--..++...+.-
T Consensus 450 k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 450 KKIENISEELKDLKKT 465 (1074)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8876655555555443
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.04 E-value=15 Score=46.85 Aligned_cols=346 Identities=18% Similarity=0.261 Sum_probs=181.5
Q ss_pred cchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHh----hh---hccccccccccccccccccccccCHHH
Q 000211 828 NLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDM----LS---SYGESFSELCLHNKSADQNLESKDLTS 900 (1852)
Q Consensus 828 ~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~----l~---sy~~~~~~l~l~~~s~~~dl~~~d~~~ 900 (1852)
.+...|....+..+.|+.++++|-.....-..-+..|.++...+ |+ +|+..+..|. .
T Consensus 109 ~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le----------------~ 172 (569)
T PRK04778 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELE----------------K 172 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHH----------------H
Confidence 44556677778888888888888888888777777777766544 22 4444443311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHh
Q 000211 901 VIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVA 980 (1852)
Q Consensus 901 v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~ 980 (1852)
+|+.+... ....+.|...-|-.+. . .+=.+-+.++..+-+.+..=+.++..++..|-+=.
T Consensus 173 ---~l~~~e~~--------f~~f~~l~~~Gd~~~A-----~----e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql 232 (569)
T PRK04778 173 ---QLENLEEE--------FSQFVELTESGDYVEA-----R----EILDQLEEELAALEQIMEEIPELLKELQTELPDQL 232 (569)
T ss_pred ---HHHHHHHH--------HHHHHHHhcCCCHHHH-----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33332221 2222233322221111 0 11122333444444444444566666666552222
Q ss_pred hhhccc--hHHHHhHhhhhhccccchhHHHHHHHH------------hhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHH
Q 000211 981 DKLKVS--SEVEENNAQRHTDLFSDLDYLEVELQQ------------LSSKNRDLAQEILALQVVTEEFDRSKQTISELT 1046 (1852)
Q Consensus 981 ~k~k~~--se~ee~y~~~~~~l~s~l~~~e~elq~------------l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~ 1046 (1852)
..++-+ -=.++.|.-.|.++-+.++.|..++.. ...+|..+...|-.|-.+.+ +-..+-.+..
T Consensus 233 ~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~le---kE~~A~~~ve 309 (569)
T PRK04778 233 QELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILE---REVKARKYVE 309 (569)
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 211111 113455666666666776666666655 55677777777766655433 3333344455
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHh----------hhhhHhhHhhhhhhhhhhhhhhhhhh
Q 000211 1047 EENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL----------RDDLKSAVSDITSQLSAKHSQLLDFD 1116 (1852)
Q Consensus 1047 ~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl----------~edl~~~vsdLaSEL~eK~~sL~sfd 1116 (1852)
.....+...+.--.+..-.+..|++.|+.++.=-|+++..-+++ .......+.......+.....+..+.
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~ 389 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEIL 389 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 55566666666677777778888888888854444444443333 33333333333333333333333333
Q ss_pred HhhHHH----------HHHHHhhhHhhhhhHHhhhhhhHHHHHHH-------------HHHHhHhhhhhhhhhhhhcccc
Q 000211 1117 QQKSEL----------IQKTAVLTKENQDLMVSLQNKSEEAAKLA-------------VELDSVRNSLQSVHDELHGERS 1173 (1852)
Q Consensus 1117 ~enqeL----------l~~~~~dlEea~sl~~~Lls~sEe~~k~A-------------~t~~q~e~~lqeL~~eL~~~~~ 1173 (1852)
.+..++ +..+..+..++....-.+...-..+.+.. --.......++.|..+|..-.-
T Consensus 390 e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~V 469 (569)
T PRK04778 390 KQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPI 469 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 333333 22222222222222222111111111111 2222456777778888877777
Q ss_pred chHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000211 1174 LSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE 1212 (1852)
Q Consensus 1174 ~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~ 1212 (1852)
..+.+.....++..-++....+..+......-++..+..
T Consensus 470 Nm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 470 NMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888888777777777766666655543
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.92 E-value=14 Score=49.31 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=69.4
Q ss_pred HHHhHhhhhhhhhhhhhccccchH-------HHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH---HhhhHHHHHH
Q 000211 1153 ELDSVRNSLQSVHDELHGERSLSD-------ELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE---LTSENQALMV 1222 (1852)
Q Consensus 1153 t~~q~e~~lqeL~~eL~~~~~~~e-------~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~---L~~en~a~mv 1222 (1852)
|...+|+-+.+|+.+|..+|-.+. +|-+--++++..+.+.--==.+.+++.-+|.-.+.. ++.-....++
T Consensus 225 te~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 225 TEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577778888888887773222 333334444444444333223333333334333333 2444444444
Q ss_pred HHhHhHHHhhhhhccccch-----HHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHH
Q 000211 1223 SLQEYAEESSRLASEGNTS-----KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV 1297 (1852)
Q Consensus 1223 ~L~d~kee~aq~a~e~~~L-----k~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv 1297 (1852)
++-|+++- -++++| .+--.||..|+..+.-=-++|+--++.|+++..++--.- -..+.-|+-+|..|.
T Consensus 305 emad~ad~-----iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~--~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 305 EMADTADA-----IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG--QAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cccchHHHHHHHHHH
Confidence 44444311 011111 122345555555555555666666677777666661000 012233555555555
Q ss_pred hhhHhhhhhh
Q 000211 1298 LDLESEKSRA 1307 (1852)
Q Consensus 1298 ~DLese~S~~ 1307 (1852)
.-|--.+-|.
T Consensus 378 ~rLKdalVrL 387 (1243)
T KOG0971|consen 378 ARLKDALVRL 387 (1243)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 60
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=18 Score=46.39 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=66.3
Q ss_pred hhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000211 1272 QLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQ 1351 (1852)
Q Consensus 1272 kLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~ 1351 (1852)
.++..+..-..+|.-..=-..|+..+.+.+-++.....+.. .|+.|++++..... .+.| .|+.
T Consensus 402 ~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~---tLq~~~~~~~~~i~--------E~~~------~l~~ 464 (581)
T KOG0995|consen 402 ERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELE---TLQEHFSNKASTIE--------EKIQ------ILGE 464 (581)
T ss_pred CcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------HHHH------HHHH
Confidence 34444444455565555567788888888887776666666 68888888765432 2222 1111
Q ss_pred HHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhh
Q 000211 1352 QVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH 1414 (1852)
Q Consensus 1352 QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~n 1414 (1852)
=..--.+-...+..+-..++.+.+.|.+ +.+.|.-.|+-+...+.-++.+--.++.
T Consensus 465 ~~~el~~~~~~~~~~k~e~eee~~k~~~-------E~e~le~~l~~l~l~~~~~m~~a~~~v~ 520 (581)
T KOG0995|consen 465 IELELKKAESKYELKKEEAEEEWKKCRK-------EIEKLEEELLNLKLVLNTSMKEAEELVK 520 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111123345556666667777666643 3445555555565555555555444443
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.31 E-value=5.6 Score=49.23 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHh---hhhcccccccccccccc
Q 000211 812 KTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDM---LSSYGESFSELCLHNKS 888 (1852)
Q Consensus 812 ~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~---l~sy~~~~~~l~l~~~s 888 (1852)
..++..-+.+-.-+...++.++..+++++..++..+++....-..++.-...++.++..+ ...|. .-...|+|..+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~Cp~C~~~ 293 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYE-KGGVCPTCTQQ 293 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCc
Confidence 334444444444555667888888888888888888887766666666666666655443 33453 34577888777
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000211 889 ADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKD 931 (1852)
Q Consensus 889 ~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d 931 (1852)
.... ++.++.|.. .+-.|-.+++.+....+
T Consensus 294 ~~~~------~~~~~~l~d-------~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 294 ISEG------PDRITKIKD-------KLKELQHSLEKLDTAID 323 (562)
T ss_pred CCCc------HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 6544 676666665 44445555555554443
No 62
>PRK11637 AmiB activator; Provisional
Probab=94.19 E-value=11 Score=45.97 Aligned_cols=74 Identities=11% Similarity=0.137 Sum_probs=57.0
Q ss_pred hhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhh
Q 000211 301 LRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKL 374 (1852)
Q Consensus 301 ~Re~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~ 374 (1852)
.+..++.....|.+++.++..+++..+....++..+.++|..-...-.++..++..+..+.+.+..++.+++.-
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666778888888888888888888888888888888777777777778888887777777777776543
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.99 E-value=28 Score=45.56 Aligned_cols=272 Identities=21% Similarity=0.217 Sum_probs=178.4
Q ss_pred HHHHHhhhhccchH---HHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHH
Q 000211 975 RFEAVADKLKVSSE---VEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA 1051 (1852)
Q Consensus 975 ~~e~~~~k~k~~se---~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a 1051 (1852)
.++-|+++-+-|+- ++-+-.+.+.+|-+++++.|.+=.+-.+--- -...=+.|-.|||+++.-|.+|.. +
T Consensus 289 ~~eiiin~ng~SsT~e~ser~s~~v~~el~~~~~~~e~~es~Rs~s~~----n~~~~d~~q~eLdK~~~~i~~Ln~---~ 361 (961)
T KOG4673|consen 289 PYEIIINKNGRSSTDEISERISDFVSRELDSRLDTSELNESQRSSSAT----NVSDSDDVQLELDKTKKEIKMLNN---A 361 (961)
T ss_pred cceeecCCCCCccccccccccchHHHHHhccchhhHHhhhccCCCCCc----cccCchhHHHHHHHHHHHHHHHHH---H
Confidence 35566676444432 4556677888999999998876555333211 112223367788888888777743 2
Q ss_pred HHHHhccchhHHHHHHHHHHh--HHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhh
Q 000211 1052 LMVALQDKSEESVKLALEVDS--FKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVL 1129 (1852)
Q Consensus 1052 l~~slqdK~ees~~~~~El~s--lK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~d 1129 (1852)
|-+- +.--++.|+.- |-+.|.-+.++-...+ .-.+.++.+ -.+|++-...|=+++...
T Consensus 362 leaR------eaqll~~e~~ka~lee~~~n~~~e~~~~k----~~~s~~ssl----------~~e~~QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 362 LEAR------EAQLLADEIAKAMLEEEQLNSVTEDLKRK----SNESEVSSL----------REEYHQRVATLEKKVQAL 421 (961)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhcccccch----------HHHHHHHHHHHHHHHHHH
Confidence 2110 00111111110 1111111111111111 111112222 235777777777777777
Q ss_pred hHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHH
Q 000211 1130 TKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQK 1209 (1852)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~ 1209 (1852)
+.+--.+--+..++++++.... .++-|.+-.....+++.--+.|.|+......++.-..+++.+-.-....+.-.
T Consensus 422 ~kERDalr~e~kslk~ela~~l-----~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~ 496 (961)
T KOG4673|consen 422 TKERDALRREQKSLKKELAAAL-----LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGEL 496 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhH
Confidence 7777666666777777665331 23555666677778888889999999999999999999988877666777777
Q ss_pred HHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhh
Q 000211 1210 IAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHC 1278 (1852)
Q Consensus 1210 ~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~ 1278 (1852)
+-.|.++-.-+...|-++.+.-.+|.-.+.++.+.+.+.++.+-+.|++.++|+.+...+..-+|+..-
T Consensus 497 i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 497 ITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 777888888888888888877799999999999999999999999999999999999888888877644
No 64
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.88 E-value=31 Score=45.68 Aligned_cols=236 Identities=21% Similarity=0.249 Sum_probs=127.6
Q ss_pred hhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHh--hhhhhHHHHHHHHHHH
Q 000211 1316 SLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSC--LAREAQCNEENARLLT 1393 (1852)
Q Consensus 1316 ~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~--lksEa~~~keNaeL~~ 1393 (1852)
.|+..|+.|+.....---+..=.+.++++.++.|..||..+.+...+=+.+.-+.+.+|..- .+.| -..
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E---------~q~ 440 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGE---------SQG 440 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---------HHH
Confidence 66777777765544422255557789999999999999999986666666666666665432 2222 233
Q ss_pred hHHHHHHHHHHHHHh----------------hHhhhhchhhhhhchhh----------------------------hhhh
Q 000211 1394 SLDTLRSELDSAIAE----------------NRVLFHENNSLIAQSEE----------------------------YKSR 1429 (1852)
Q Consensus 1394 ~I~eLesELeasiae----------------kR~L~nand~~~AElEE----------------------------~Kqr 1429 (1852)
+|+....||-++.-+ +|...+-|+.-+.=..+ ....
T Consensus 441 ~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~ 520 (717)
T PF09730_consen 441 SLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRRESSSVEERGLSSPILTDRGASSREMITSESGES 520 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhccCCCcccccccCcccccccccccccccCCCCCC
Confidence 455555555444332 56655555543321100 0000
Q ss_pred hHH--------hh----hhhhhhhhhhHHHHHHHHHhh---hccHHH----------HhhhhhhhhhHHHHHHHHHHHHH
Q 000211 1430 AET--------MA----DNYGEHKSQLALEVERMKQLL---VGSEEE----------IDDLMMSREELEIKVVVLKAKLA 1484 (1852)
Q Consensus 1430 ~E~--------~l----~~~~Eeksk~a~Eve~lK~LL---~~~eee----------id~l~~~k~e~ei~~~vlk~kl~ 1484 (1852)
.+. .. .+-..--+-++.--+|+|+|. ...=+. ....-..++++-=-|+-||+-|.
T Consensus 521 ~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLS 600 (717)
T PF09730_consen 521 SPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLS 600 (717)
T ss_pred CCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHH
Confidence 000 00 000011122333445555554 111111 11122334444445666666666
Q ss_pred hhhHHHhcccc--------chhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhHHHHhhhhhcccCCCcc
Q 000211 1485 EQHAQVISSEG--------YIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADAECLKLHEKRESEGLPT 1556 (1852)
Q Consensus 1485 e~~~~i~~~~~--------~~~el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaeaec~~~~ek~e~eg~~~ 1556 (1852)
--+-||.||-- .--=|.+||.+|- .|-++=+|-...|=.-||-||+-|--
T Consensus 601 TKREQIaTLRTVLKANKqTAEvALanLKsKYE------~EK~~v~etm~kLRnELK~LKEDAAT---------------- 658 (717)
T PF09730_consen 601 TKREQIATLRTVLKANKQTAEVALANLKSKYE------NEKAMVSETMMKLRNELKALKEDAAT---------------- 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 66666665521 1122455555554 24445555556666778888876644
Q ss_pred hhhhhhHHHHHH--HHhHHHHHHhhhhhcc
Q 000211 1557 GMQESLRIAFIK--EQCETKVQELKHHLSI 1584 (1852)
Q Consensus 1557 amqeslriafik--eqyetklqelk~qlsi 1584 (1852)
.=|||--|-. ++|=|.|-|++.||.-
T Consensus 659 --FsSlRamFa~RCdEYvtQldemqrqL~a 686 (717)
T PF09730_consen 659 --FSSLRAMFAARCDEYVTQLDEMQRQLAA 686 (717)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4499999986 7899999999988753
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.53 E-value=50 Score=46.99 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=84.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 000211 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAAL---KRARLNYSIAVNQLQKDLELLSSQVLS 598 (1852)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeAL---RKtRwnnA~aaerLQeef~~LS~Qm~S 598 (1852)
.+.+..+..+++.+...++++.... ......-.+.+.+.-.+++.+ +..+-.+..+.+.+|.+...+...+..
T Consensus 347 q~ei~~l~~~LeELee~Lee~eeeL----eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~ 422 (1486)
T PRK04863 347 QEKIERYQADLEELEERLEEQNEVV----EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQA 422 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444333 333333333333333444443 333334555667777777777666644
Q ss_pred hhhhhHHHHHHHhhcCCCCcchhhhhhhhhccCCCcchhhhhhhhhhhhcccccccccCccchHHhhhhhHHHHHHHHHH
Q 000211 599 MYQTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQHLGGDILIEDLKRSLYLQEGLYRK 678 (1852)
Q Consensus 599 ~fe~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~kl~~~~n~~~~~k~q~l~~~i~~e~lkrsl~lqe~l~~~ 678 (1852)
.-.+++ +-..+.+....-..++.+....-.+ +..++.+++.++...+ ..+.--+.-|..
T Consensus 423 Le~~~~------~~~~~~~SdEeLe~~LenF~aklee-~e~qL~elE~kL~~le--------------a~leql~~~~~~ 481 (1486)
T PRK04863 423 LERAKQ------LCGLPDLTADNAEDWLEEFQAKEQE-ATEELLSLEQKLSVAQ--------------AAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHH------HhCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 433332 2222232222222233333222222 3333333333333322 111111111222
Q ss_pred HHHHHHHHHHhhhhHHHhHHHHHHH--HHHhhhHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000211 679 VEEEACELLSVNIYLDVFSKTLQKT--LLEASGEIRLMKERMDELSHQLELSTESNELL 735 (1852)
Q Consensus 679 ve~e~~em~~~ni~~~vfs~~l~et--~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l 735 (1852)
+-.+.-+ --.+--|++|-.+|+.. +---.+-..-|+.++.+|++.|+.-..+..+|
T Consensus 482 l~~~~Gk-v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~ 539 (1486)
T PRK04863 482 VRKIAGE-VSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLL 539 (1486)
T ss_pred HHHHcCC-cCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 23445678887777643 22223456678888888888776655554443
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.53 E-value=42 Score=46.13 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhh----hccHHHHHHHHhhhhHHHhhhhhhhhH
Q 000211 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLS----SKNRDLAQEILALQVVTEEFDRSKQTI 1042 (1852)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~----s~n~~l~~~i~~l~~v~~E~~~tK~~~ 1042 (1852)
+.||+|+..+..+++|-|-. +-.-.-+-+.|+|..||..|++|. ..|- -++.|..|+..+++|.| .|
T Consensus 1171 ~il~~L~~rt~rl~~~A~~l-----~~tGv~gay~s~f~~me~kl~~ir~il~~~sv-s~~~i~~l~~~~~~lr~---~l 1241 (1758)
T KOG0994|consen 1171 AILQELALRTHRLINRAKEL-----KQTGVLGAYASRFLDMEEKLEEIRAILSAPSV-SAEDIAQLASATESLRR---QL 1241 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----hhccCchhhHhHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHH---HH
Confidence 45677777777777664421 111223356788899998888763 1221 12344444444444333 33
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHH
Q 000211 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELL 1085 (1852)
Q Consensus 1043 ~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~ 1085 (1852)
..+++.--.+-+-|-|-.....--..+|+||...+..|..-.+
T Consensus 1242 ~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~k 1284 (1758)
T KOG0994|consen 1242 QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYK 1284 (1758)
T ss_pred HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344677777777666554433
No 67
>PRK11637 AmiB activator; Provisional
Probab=93.51 E-value=5.9 Score=48.30 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhh
Q 000211 1385 NEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSR 1429 (1852)
Q Consensus 1385 ~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr 1429 (1852)
++.-......|...+.+++...++...+.......+++|+..+..
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444433333
No 68
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.49 E-value=9.2 Score=43.39 Aligned_cols=97 Identities=24% Similarity=0.428 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH
Q 000211 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1852)
Q Consensus 1043 ~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1852)
..|.+||..|-.++=--.+.+.+|+.|+.+|++.++|+.--++..+++-+.++. ++..+-++-.++..|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-----------Lk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-----------LKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 467788888888887788889999999999999999998777777666554433 333333344444445
Q ss_pred HHHHHhhhHhhhhhHHhhhhhhHHHHHH
Q 000211 1123 IQKTAVLTKENQDLMVSLQNKSEEAAKL 1150 (1852)
Q Consensus 1123 l~~~~~dlEea~sl~~~Lls~sEe~~k~ 1150 (1852)
+.+-.....+.++++...-.+-++--++
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5555555555555444444444433333
No 69
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.75 E-value=38 Score=43.40 Aligned_cols=336 Identities=18% Similarity=0.278 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhh----hhhHhhHhhhhhhhhhhhh-----
Q 000211 1040 QTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR----DDLKSAVSDITSQLSAKHS----- 1110 (1852)
Q Consensus 1040 ~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~----edl~~~vsdLaSEL~eK~~----- 1110 (1852)
..+..+...=+++...|.+=-+.-.+.-.++..||.-|+.++..+.+-+..- +.++..++.+-...+.-..
T Consensus 108 ~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 108 EQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3333444444444444444444444555677777888888877777766543 3344433333333331111
Q ss_pred -------hhhhhhHhhHHH---HHHHHhhhHh-hhhhHHhhhhhhHHHHHHH------------HHHHhHhhhhhhhhhh
Q 000211 1111 -------QLLDFDQQKSEL---IQKTAVLTKE-NQDLMVSLQNKSEEAAKLA------------VELDSVRNSLQSVHDE 1167 (1852)
Q Consensus 1111 -------sL~sfd~enqeL---l~~~~~dlEe-a~sl~~~Lls~sEe~~k~A------------~t~~q~e~~lqeL~~e 1167 (1852)
-+.....+...| |..+-..... ...+-..|.-++.-+.+.. -+...+++.+.+....
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111111111111 2222222222 1222223333333333222 3334444444444444
Q ss_pred hhccc-----cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchH
Q 000211 1168 LHGER-----SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSK 1242 (1852)
Q Consensus 1168 L~~~~-----~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk 1242 (1852)
|..+. ...+.++.....+-..|..=...=-........+...+..+...|..++.++. +++
T Consensus 268 L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~--------------~v~ 333 (560)
T PF06160_consen 268 LKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELE--------------RVS 333 (560)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 43332 33333333333333344333333333444444455555555555555555553 333
Q ss_pred HHHHhHHHHHHHhhhhHH---HhhHHHHHhhhhhhhhhhhhhc-----------ccccchHHHHHHHHHhhhHhhhhhhh
Q 000211 1243 ETLQSLRDELQSERSLRD---ELKNVVTDLTSQLNEKHCQLLD-----------LDQQKSELVQLKLLVLDLESEKSRAS 1308 (1852)
Q Consensus 1243 ~~L~Sl~eEL~~ersLre---eLE~tV~~L~skLdEk~~qL~~-----------fd~~~~EL~~Lk~qv~DLese~S~~~ 1308 (1852)
..-.=-++++..-+.+.+ .++..+.++...+++.+...+. ++.-..+...+...+..|...-.+.+
T Consensus 334 ~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar 413 (560)
T PF06160_consen 334 QSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAR 413 (560)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444432 2333333333333333332211 11222233444555555554444444
Q ss_pred hhcccchhhhHHHHHHHhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhh
Q 000211 1309 EESSSVTSLQSELSEMHELLLA-------VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLARE 1381 (1852)
Q Consensus 1309 ~ktsefk~Ls~hL~El~e~l~A-------~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksE 1381 (1852)
.+-. .++..|++++-.+.. ++..-.|... ...++.|..+|.-..=..+.+...+..|.+.+++ +..+
T Consensus 414 ~~l~---~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~--~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~-L~~~ 487 (560)
T PF06160_consen 414 EKLQ---KLKQKLREIKRRLEKSNLPGLPEDYLDYFFDV--SDEIEELSDELNQVPINMDEVNKQLEEAEDDVET-LEEK 487 (560)
T ss_pred HHHH---HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHH-HHHH
Confidence 3333 667777777766666 5555555544 3788999999999999999999999999988875 3445
Q ss_pred hHHHHHHHHHHHhH
Q 000211 1382 AQCNEENARLLTSL 1395 (1852)
Q Consensus 1382 a~~~keNaeL~~~I 1395 (1852)
|.-+=.++.|--.+
T Consensus 488 t~~li~~A~L~E~~ 501 (560)
T PF06160_consen 488 TEELIDNATLAEQL 501 (560)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.34 E-value=13 Score=49.33 Aligned_cols=149 Identities=21% Similarity=0.174 Sum_probs=90.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hH-HHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRH--ML-GELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q--~~-~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1852)
..+++++.+|.+-|+...+.+..++.+-+-.+--||.|++||.-.+.+ .+ ..+.|+...|++=+..+..+..|.-++
T Consensus 462 ~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 478899999999999999999999999999999999999985543321 11 336667777777777777766666666
Q ss_pred HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcC
Q 000211 536 RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAV-NQLQKDLELLSSQVLSMYQTNENLIKQAFVDS 614 (1852)
Q Consensus 536 eeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aa-erLQeef~~LS~Qm~S~fe~NEkl~~qA~~Ea 614 (1852)
-.++-.+. +....+..|+|+- ..-|+-.+-++.-++ -++|++++ ---+-+...+-+..+-.|+-.-
T Consensus 542 ~~~~~~~~-------~e~~~~~~e~e~s----i~ql~l~~~~~~ea~~tQ~~~~~~--~~il~~~~~~~~q~lq~al~~l 608 (980)
T KOG0980|consen 542 AAELVARE-------EEREALRLEAERS----INQLELDSSASTEAGITQLQDDLN--DPILDGSLASGIQALQNALYQL 608 (980)
T ss_pred HHHHHHHH-------HHHHHHHHHHHhh----HHHhhcccccchHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 55554444 1122233333332 222333332222222 24565555 1123334445566677777666
Q ss_pred CCCcch
Q 000211 615 PQPTCQ 620 (1852)
Q Consensus 615 ~e~~~q 620 (1852)
..|...
T Consensus 609 d~P~~~ 614 (980)
T KOG0980|consen 609 DSPLHW 614 (980)
T ss_pred CCCccc
Confidence 666544
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=8.7 Score=50.61 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=63.8
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHH---hhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhh
Q 000211 1195 QLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEE---SSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTS 1271 (1852)
Q Consensus 1195 ~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee---~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~s 1271 (1852)
.+.+..-++.+|.+..--.+++|.-+.-.+..-+.+ .+++..++.+..+..-...+++...++=-..+......|+.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~ 758 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTK 758 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555522 26677777888888888899999999888899999999999
Q ss_pred hhhhhhhhhhcccc
Q 000211 1272 QLNEKHCQLLDLDQ 1285 (1852)
Q Consensus 1272 kLdEk~~qL~~fd~ 1285 (1852)
+|+++.+-+.+|..
T Consensus 759 ~L~k~~~~~es~k~ 772 (970)
T KOG0946|consen 759 ELNKKNADIESFKA 772 (970)
T ss_pred HHHhhhHHHHHHHH
Confidence 99999888877643
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.01 E-value=77 Score=45.28 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=101.1
Q ss_pred hhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 000211 1092 DDLKSAVSDITSQLSAKHSQLLDFDQQKSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG 1170 (1852)
Q Consensus 1092 edl~~~vsdLaSEL~eK~~sL~sfd~enqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~ 1170 (1852)
..++..+.++-.+++..+..+..|..+...+ ...-...-..|...+-+++.+-.+.+..|-...+++..+.+|.+.++.
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQ 531 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555554 222235566777888899999999999998888889888888885554
Q ss_pred cc---cchHHHHh--------------hhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH-------------hhhHHHH
Q 000211 1171 ER---SLSDELKS--------------RAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL-------------TSENQAL 1220 (1852)
Q Consensus 1171 ~~---~~~e~LQs--------------k~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L-------------~~en~a~ 1220 (1852)
-. ..+..+.. ...+.+..+..+-..-.+..+..+++-.-++-| =-.+++.
T Consensus 532 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~a 611 (1486)
T PRK04863 532 QQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDA 611 (1486)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHH
Confidence 33 33333322 222222222222222222333333333332222 0111222
Q ss_pred HHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHH
Q 000211 1221 MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLL 1296 (1852)
Q Consensus 1221 mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~q 1296 (1852)
...|.++.. ..-.+..++....+.+-+.....+.-++.++.+...|..+...+ +..+++.-..|++.
T Consensus 612 l~~L~eq~g---~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l------~~~~~g~~~~l~~~ 678 (1486)
T PRK04863 612 LARLREQSG---EEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERL------SQPGGSEDPRLNAL 678 (1486)
T ss_pred HHHHHHhcc---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCCCccHHHHHH
Confidence 222333332 12334444455555555555555566677777777777666644 34444444555554
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.42 E-value=58 Score=42.63 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=122.1
Q ss_pred hHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHH
Q 000211 987 SEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKL 1066 (1852)
Q Consensus 987 se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~ 1066 (1852)
|+.+..+.-.-..|-..++.|+.+++..+..|+.|-..+.....-..|+.+.-....+-..+...|+..+|.-...-++.
T Consensus 79 se~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRA 158 (617)
T PF15070_consen 79 SEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRA 158 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 44444333333335556778888888888888888776667777777777766666676677778888888777777777
Q ss_pred HHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHH
Q 000211 1067 ALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEE 1146 (1852)
Q Consensus 1067 ~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe 1146 (1852)
++--..||+-|.-+++ +--.+++++++-.+.|-++.--++..-..+. +.++-+..+...++++..-+.+|...+
T Consensus 159 lsQN~eLK~QL~Elq~---~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-~l~~~l~~~~e~le~K~qE~~~Lq~q~-- 232 (617)
T PF15070_consen 159 LSQNRELKEQLAELQD---AFVKLTNENMELTSALQSEQHVKKELQKKLG-ELQEKLHNLKEKLELKSQEAQSLQEQR-- 232 (617)
T ss_pred HHhHHHHHHHHHHHHH---HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHH--
Confidence 7766777776665554 2233344444433333333222211111111 122223333334444433333333333
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhh----hhhhHHHHHHHH---HhhhHHH
Q 000211 1147 AAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFD----QQNSEMIQKIAE---LTSENQA 1219 (1852)
Q Consensus 1147 ~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~----~enSeL~~~~~~---L~~en~a 1219 (1852)
.+|-++|+-....-+...+..+.||+-..--+-+|+..+..|.+.. -...+|-...+. +...|+.
T Consensus 233 --------dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqq 304 (617)
T PF15070_consen 233 --------DQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQ 304 (617)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3334444444444455666677777776665555666665554331 222444444444 4666766
Q ss_pred HHHHHh
Q 000211 1220 LMVSLQ 1225 (1852)
Q Consensus 1220 ~mv~L~ 1225 (1852)
+-+.|-
T Consensus 305 L~~qls 310 (617)
T PF15070_consen 305 LQAQLS 310 (617)
T ss_pred HHHHHH
Confidence 666653
No 74
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=56 Score=43.73 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=44.4
Q ss_pred hhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHH
Q 000211 1425 EYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKM 1502 (1852)
Q Consensus 1425 E~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~ 1502 (1852)
.++.+.+-.+..|.++=.-+...+..+-+=+.+++++.|+=+++|+=.++|. +-+.-.|+++.+--+|+-+
T Consensus 848 ~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~-------~nl~lki~s~kqeqee~~v 918 (970)
T KOG0946|consen 848 NELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKS-------ENLSLKIVSNKQEQEELLV 918 (970)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhc-------ccchhcccchhhhHHHHHH
Confidence 4555556555566655444556666666667777899999999998877776 3333445555444444433
No 75
>PF13514 AAA_27: AAA domain
Probab=90.73 E-value=84 Score=43.29 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=64.7
Q ss_pred HhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 842 TVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQ 921 (1852)
Q Consensus 842 ~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ 921 (1852)
....+.+.+..-...++.-+..+..++..++..++..+.+.|.. ..+..+-..|...+. ...++-.+.+
T Consensus 740 ~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~----------~~~~~L~~~l~~a~~-~~~~~~~l~~ 808 (1111)
T PF13514_consen 740 EALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE----------EALEALRARLEEARE-AQEERERLQE 808 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH----------HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344444444455667777778888888888887766654441 334444445554443 3566777788
Q ss_pred HHHHHHHhHhHhhhhcccchhhHHHHHHHHHh
Q 000211 922 EKKALIDEKDRAEMSFSKSESDIVLVKQKFEH 953 (1852)
Q Consensus 922 ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~ 953 (1852)
+.+.+..+.+.++..+...+.++..+-.....
T Consensus 809 ~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~ 840 (1111)
T PF13514_consen 809 QLEELEEELEQAEEELEELEAELAELLEQAGV 840 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88888888888887777777777666555543
No 76
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.61 E-value=20 Score=38.92 Aligned_cols=123 Identities=25% Similarity=0.258 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhHHHhhh----------hhhhhHHhHH
Q 000211 463 GKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML---GELQNLRNEHS----------SCLYTVSSAK 529 (1852)
Q Consensus 463 ~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~---~ElqnLr~EhS----------~~l~tIs~Le 529 (1852)
.|..+..+++...++++++|+-+++-|+.+-+.....++..-++.- .+++.|..+-+ .=|.+++.=+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666655555444333222111 11222221111 1234444455
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000211 530 AEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELL 592 (1852)
Q Consensus 530 aqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~L 592 (1852)
..+..+=++++.++..++.......+.=.+-|+- -++..=...++++.||.+++-|
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e-------k~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE-------KVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 5555566666666666666555555444444333 4444555678899999998765
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.69 E-value=70 Score=42.45 Aligned_cols=202 Identities=28% Similarity=0.367 Sum_probs=128.8
Q ss_pred cccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHH
Q 000211 826 NGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRL 905 (1852)
Q Consensus 826 ~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~l 905 (1852)
.+.++-||..++.+-+.+..+++.|......=-+.+..|+.||..
T Consensus 455 Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e----------------------------------- 499 (697)
T PF09726_consen 455 ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE----------------------------------- 499 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 356788888888888888888777777666555556666666433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhcc
Q 000211 906 EVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKV 985 (1852)
Q Consensus 906 e~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~ 985 (1852)
|.=++.+|++ ||.+|+++-..|-..+......|- + .
T Consensus 500 E~~~R~~lEk--QL~eErk~r~~ee~~aar~~~~~~--------------------------------------~---~- 535 (697)
T PF09726_consen 500 ERRQRASLEK--QLQEERKARKEEEEKAARALAQAQ--------------------------------------A---T- 535 (697)
T ss_pred HHHHHHHHHH--HHHHHHHHHhHHHHhhhhccccch--------------------------------------h---c-
Confidence 3345666766 566777665554433333322220 0 1
Q ss_pred chHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHH
Q 000211 986 SSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVK 1065 (1852)
Q Consensus 986 ~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~ 1065 (1852)
..|.-|-+.++-.+|=+.+.+|..||+.-....+.|-.++-++.--. .|-.. +.--
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~----------~e~~~--------------~~e~ 591 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE----------KESEK--------------DTEV 591 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhh--------------hHHH
Confidence 11555556666667777778888888877777777776663332211 11111 2223
Q ss_pred HHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhh
Q 000211 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLT 1130 (1852)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dl 1130 (1852)
|.+.|..++.-=++|-+-|-+|=.+-.||-+.+++---||...+.++..-|.|..+|..+++..+
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444456677778888888889998999888999999999999999999977766544
No 78
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.98 E-value=27 Score=42.36 Aligned_cols=193 Identities=18% Similarity=0.237 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------H----HHHHhHHHhhhh
Q 000211 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM--------------------L----GELQNLRNEHSS 520 (1852)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~--------------------~----~ElqnLr~EhS~ 520 (1852)
+.=|.+|||.|+.+||..-.-++||.+.|..|+........+- + .+-..|..|-..
T Consensus 11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~ 90 (319)
T PF09789_consen 11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE 90 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999999654433110 0 112224445444
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 000211 521 CLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQVLSMY 600 (1852)
Q Consensus 521 ~l~tIs~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~LS~Qm~S~f 600 (1852)
---.+.+++..++-|++.+..|-.++.+-- +.... .-|=..-..-|++++..+.|-..+-++.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~----------------~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLARQRVGDEGIG----------------ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHhhhhhhcccc----------------ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666544443211 11111 2222333344666666666666667777
Q ss_pred hhhHHHHHHHhhcCCCCcchhhhhhhhhccCCCcchhhhhhhhhhhhcccccccccCccchHHhhh-hhHHHHHHHHHHH
Q 000211 601 QTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLACQDQYIGVKKQHLGGDILIEDLK-RSLYLQEGLYRKV 679 (1852)
Q Consensus 601 e~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~kl~~~~n~~~~~k~q~l~~~i~~e~lk-rsl~lqe~l~~~v 679 (1852)
|+=|-++. +.+.|.-|.+-|+.++.-+-...=.+-|.|+.|- -.=+|+|.|-+.-
T Consensus 154 DEkeEl~~------------------------ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 154 DEKEELVT------------------------ERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 77666653 2233888988888877654322222335677665 3446777777655
Q ss_pred HHHHHHHHHhhhhHHHhHH
Q 000211 680 EEEACELLSVNIYLDVFSK 698 (1852)
Q Consensus 680 e~e~~em~~~ni~~~vfs~ 698 (1852)
||=-.-..-.|=|...+..
T Consensus 210 eE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5433344445556665553
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.80 E-value=1.1e+02 Score=41.74 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 000211 697 SKTLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRL 739 (1852)
Q Consensus 697 s~~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l 739 (1852)
-++-+||++.-..+|.-..+++..|.-||.+-+|-..+..-+.
T Consensus 513 ~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees 555 (1243)
T KOG0971|consen 513 VEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEES 555 (1243)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
Confidence 3566788888888888888888888888887777555555444
No 80
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.86 E-value=75 Score=38.80 Aligned_cols=266 Identities=21% Similarity=0.254 Sum_probs=139.4
Q ss_pred hhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhcc----------------------------chhHHHH
Q 000211 1014 LSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQD----------------------------KSEESVK 1065 (1852)
Q Consensus 1014 l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqd----------------------------K~ees~~ 1065 (1852)
|.||-++|-==-.+|+..-.|-|..|.-+..|.+..+++-....+ -.+.--+
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 455666655555567777777777777777777766665544322 2233344
Q ss_pred HHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhH
Q 000211 1066 LALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSE 1145 (1852)
Q Consensus 1066 ~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sE 1145 (1852)
|..|+++|++-+..+++....+|.- .++.=+...+.. .-.|-.++..|+.++-...+....+..++.+.-.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~-------la~~r~~~~~~~--~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREK-------LARQRVGDEGIG--ARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHH-------HHhhhhhhcccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444432 121111111111 1122266666766665555666666777777777
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHh
Q 000211 1146 EAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQ 1225 (1852)
Q Consensus 1146 e~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~ 1225 (1852)
+......+++.|+..+.-|..||.-.-+-.+. +..||++++.+-.- |-.-+..++.+..-+...+.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~---rivDIDaLi~ENRy-----------L~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDEN---RIVDIDALIMENRY-----------LKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CcccHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888877543322222 56677776643221 22222222333333333333
Q ss_pred HhH--------HHhh------hh-hccc---cchHHHHHhHHHHH--HHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccc
Q 000211 1226 EYA--------EESS------RL-ASEG---NTSKETLQSLRDEL--QSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQ 1285 (1852)
Q Consensus 1226 d~k--------ee~a------q~-a~e~---~~Lk~~L~Sl~eEL--~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~ 1285 (1852)
-|| ...- .. ...| .|.++.|.|-..+. -.=...=-.|.+-++.|-.-+++|-.+|. +
T Consensus 221 KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~indK~~al~---H 297 (319)
T PF09789_consen 221 KYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETINDKNLALQ---H 297 (319)
T ss_pred HHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhhhHHHHHH---H
Confidence 333 0000 11 1112 23444443322221 00011223566667777778888877662 3
Q ss_pred cchHHHHHHHHHhhhHhhhh
Q 000211 1286 QKSELVQLKLLVLDLESEKS 1305 (1852)
Q Consensus 1286 ~~~EL~~Lk~qv~DLese~S 1305 (1852)
++.==-.|..+|.+||+++.
T Consensus 298 qr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 298 QRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333567888999998763
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.76 E-value=16 Score=43.57 Aligned_cols=171 Identities=17% Similarity=0.155 Sum_probs=84.4
Q ss_pred hHhhhhhHHhhhhhhHHHHHHH------HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhh
Q 000211 1130 TKENQDLMVSLQNKSEEAAKLA------VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQN 1203 (1852)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~k~A------~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~en 1203 (1852)
-+.....-..+...+..++..| .-...+.+....|...+..+..+...|.+...-+...+......-.....+-
T Consensus 114 ~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 114 PDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455566666666554 3333456666666666666666666666665555555555554444444444
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcc
Q 000211 1204 SEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL 1283 (1852)
Q Consensus 1204 SeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~f 1283 (1852)
+.|.+....+..-.+. .|...+.+=+.+..++...+..|..++.++.....--+++......+.+++.+.+..+...
T Consensus 194 ~~Lk~~~~e~~~~D~~---eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 194 ENLKQLVEEIESCDQE---ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHhhhhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443333222221 2222223323333444444444444444444444444444444444444444444333323
Q ss_pred -cccchHHHHHHHHHhhhHhh
Q 000211 1284 -DQQKSELVQLKLLVLDLESE 1303 (1852)
Q Consensus 1284 -d~~~~EL~~Lk~qv~DLese 1303 (1852)
+-...|+.+||..+..|++.
T Consensus 271 r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 271 RGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 33667777777777777653
No 82
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.53 E-value=1e+02 Score=40.05 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhHHhhhhhhhh-hhhhhhhhhhhhHHHHHHHHhhh
Q 000211 1590 EEMLWKLQDAIDEIENRKKSEA-AHLKKNEELGVKILELEAELQSL 1634 (1852)
Q Consensus 1590 Eeml~KLqdaide~e~rkKse~-~~~K~~eEL~~kilElEaelq~~ 1634 (1852)
...+-.+...++.+.++.++.+ ...++.+++...|.+++..+..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 372 GSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444567778888886555444 45567788888888877766544
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.41 E-value=26 Score=41.81 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=94.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHhHHHhhhhhhhhHHhHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM-------LGELQNLRNEHSSCLYTVSSAKAE 531 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~-------~~ElqnLr~EhS~~l~tIs~Leaq 531 (1852)
..|.+.+..|..+.....+..+.+...+.++.-+|..|..++...+... ..++..++.+-+..-..|...+..
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777777777777777777777755433211 145777777766666666655555
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000211 532 IEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQ 595 (1852)
Q Consensus 532 ve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~LS~Q 595 (1852)
+.. ++.|.....+.+++++..+.+....--.|+.-+.+.|--...-+.+|+..|+.|-..
T Consensus 232 l~e----l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 232 LAE----LQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 544 455566677778889988888888877888888888877888899999999988643
No 84
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.16 E-value=1.5e+02 Score=41.56 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.1
Q ss_pred hhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhH
Q 000211 1161 LQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQE 1226 (1852)
Q Consensus 1161 lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d 1226 (1852)
..++.+.+.-+-.....+.+.+..+.+.+....-+..+.....+++...+.+|+..+-+.++.+.-
T Consensus 583 ~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k 648 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLK 648 (1317)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence 334445555555556666677777777777777777888888888888888887777777666543
No 85
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=87.01 E-value=1.2 Score=45.35 Aligned_cols=94 Identities=20% Similarity=0.385 Sum_probs=60.4
Q ss_pred ecccccc---cccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh-hc-CCCcc
Q 000211 24 ATHIQQT---GWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-GSSRS 98 (1852)
Q Consensus 24 AtqVp~~---gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-GSsks 98 (1852)
|..+|.. |-+..+|.++-...++...|| .|..| .+|+|.-+-........++.++...|.| .. +.++.
T Consensus 25 a~nL~~~~~~~~~d~yVk~~llp~~~~~~kT---kv~~~----~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~ 97 (124)
T cd08389 25 AQDIPTKDRGGASSWQVHLVLLPSKKQRAKT---KVQRG----PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKE 97 (124)
T ss_pred ecCCCchhcCCCCCcEEEEEEccCCcceeec---ccccC----CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccC
Confidence 4456644 455557665444444444443 35544 4999976665554444556666667766 22 34578
Q ss_pred cccceeecchhhcccccCCeeeeecCC
Q 000211 99 SILGEATINLADYADASKPSTVLLPLH 125 (1852)
Q Consensus 99 giLGEasinlAdY~~a~kp~~VSLPLk 125 (1852)
.+||++.|+|+++ ....+.+.-+||.
T Consensus 98 ~~lG~~~i~L~~l-~~~~~~~~w~~L~ 123 (124)
T cd08389 98 RLIGEKVVPLSQL-NLEGETTVWLTLE 123 (124)
T ss_pred ceEEEEEEecccc-CCCCCceEEEeCC
Confidence 8999999999999 4467888888875
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.58 E-value=67 Score=36.89 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhh
Q 000211 1063 SVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDF 1115 (1852)
Q Consensus 1063 s~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sf 1115 (1852)
++-|.+=|++|.-+=+-|.+|+.......+-.+...+.|+-++-.++.++.+.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666667776666666666666677766666666666544
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.55 E-value=36 Score=41.12 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHhHHHhhHhhhHHHHHHHHhhhhhH
Q 000211 1069 EVDSFKQSFQSLHDELLVERSLRDDLK 1095 (1852)
Q Consensus 1069 El~slK~s~qSLhdEl~aersl~edl~ 1095 (1852)
=++.|.+-+++|.+|+..+|.....|.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367788888888888888877665554
No 88
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.71 E-value=1.3e+02 Score=39.49 Aligned_cols=292 Identities=21% Similarity=0.229 Sum_probs=161.5
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhh
Q 000211 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1852)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk 1276 (1852)
+++...+.........|..++.+.-...-+.+.. .-.-+|-++..|++.+.---...+....+-=.+|-+-
T Consensus 29 ~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k---------~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~ea 99 (629)
T KOG0963|consen 29 TEIAQRQDESEISRKRLAEETREFKKNTPEDKLK---------MVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEA 99 (629)
T ss_pred HHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhC
Confidence 4555566666666666766666655555444422 2345688888999988665555665555554444443
Q ss_pred ----------hhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 000211 1277 ----------HCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWV 1346 (1852)
Q Consensus 1277 ----------~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkv 1346 (1852)
...+...+.-..|...|+..+-++.-+++...-+-..+.+|.-.|.++. +..-+||++--...=
T Consensus 100 PDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~------~~~~~~ie~~a~~~e 173 (629)
T KOG0963|consen 100 PDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLE------QLLEIFIENAANETE 173 (629)
T ss_pred CCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 2222333334567778888887777777755444445555555555444 455566653322222
Q ss_pred HHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhh-----------hc
Q 000211 1347 EELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLF-----------HE 1415 (1852)
Q Consensus 1347 qEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~-----------na 1415 (1852)
+.+.++ ..+-+..++|.. ....+.|..|..+|.+|.+.+.+.=.+.=.+. ..
T Consensus 174 ~~~~q~-------~~e~e~~L~~~~----------~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~ae 236 (629)
T KOG0963|consen 174 EKLEQE-------WAEREAGLKDEE----------QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAE 236 (629)
T ss_pred HHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHH
Confidence 222222 222333333333 23345666777777777665544333322222 22
Q ss_pred hhhhhhchhhhhhhhHHhhhhhhhhhhhh---------H--HHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 000211 1416 NNSLIAQSEEYKSRAETMADNYGEHKSQL---------A--LEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLA 1484 (1852)
Q Consensus 1416 nd~~~AElEE~Kqr~E~~l~~~~Eeksk~---------a--~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~ 1484 (1852)
+..++.+++.-++++.....+|..=+.++ + ++++++..+|+..+.+|-.|...=.-++-- +-.-++
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e 313 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34556666666666666655554433332 3 788899999999888888777543333322 222334
Q ss_pred hhhHHHhcc----ccchhHHHHHHHH------hHHHHHHHHHHHhhhhhhc
Q 000211 1485 EQHAQVISS----EGYIDEQKMLQNQ------CNELRRKLSEQILKTEEFR 1525 (1852)
Q Consensus 1485 e~~~~i~~~----~~~~~el~~l~~~------~~eltqklseqilkteefk 1525 (1852)
.+.+||.++ ..+..+|..|+++ |+++...|+ |||.=||-
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELs--iLk~ief~ 362 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELS--ILKAIEFG 362 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH--HHHHhhcC
Confidence 455666665 3455556555554 445556654 67766663
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.68 E-value=1e+02 Score=40.25 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=83.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchh---------hhhhhhHHhhhhhh------
Q 000211 1374 LNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE---------EYKSRAETMADNYG------ 1438 (1852)
Q Consensus 1374 ln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElE---------E~Kqr~E~~l~~~~------ 1438 (1852)
++..+..-.....+-.+....|-.++.+++....+-|..-..|..+.++++ .|=+|+--+.-+..
T Consensus 428 ~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI 507 (594)
T PF05667_consen 428 YRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEI 507 (594)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333334445556667788888999999999998888888888888888 22222222221111
Q ss_pred ----hhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHH
Q 000211 1439 ----EHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKL 1514 (1852)
Q Consensus 1439 ----Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqkl 1514 (1852)
.+-..+..|+-.+..-|.-.---+|+|++-. +|=|+. ...-|-=|+.|..-|+.|-+.
T Consensus 508 ~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrd-----------AKkDe~------~rkaYK~La~lh~~c~~Li~~- 569 (594)
T PF05667_consen 508 EKILSDTRELQKEINSLTGKLDRTFTVTDELIFRD-----------AKKDEA------ARKAYKLLASLHENCSQLIET- 569 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------hhcCHH------HHHHHHHHHHHHHHHHHHHHH-
Confidence 1113345555555555555555555554432 222332 345566677777777776443
Q ss_pred HHHHhhhhhhcchhhhhHHhhhhhhHH
Q 000211 1515 SEQILKTEEFRNLSIHLKELKDKADAE 1541 (1852)
Q Consensus 1515 seqilkteefknlsihlkelkdkaeae 1541 (1852)
.++=-.+..-+++|-++.+.|
T Consensus 570 ------v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 570 ------VEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred ------HHHhhHHHHHHHHHHHHHHHH
Confidence 344455566777777777764
No 90
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.16 E-value=30 Score=45.13 Aligned_cols=208 Identities=18% Similarity=0.127 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHH-HhHHHHHHHHHHHHHhh
Q 000211 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLL-TSLDTLRSELDSAIAEN 1409 (1852)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~-~~I~eLesELeasiaek 1409 (1852)
..|.=+|+..+-+.+.+........-...+.++..++.+++..++..+..-.-..-++..+. .+|..+...|..+-++.
T Consensus 174 N~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~ 253 (754)
T TIGR01005 174 DAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANR 253 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHH
Confidence 44555566555555555555555555556666666666666666555543211111222222 34444444444443332
Q ss_pred HhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 000211 1410 RVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQ 1489 (1852)
Q Consensus 1410 R~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~ 1489 (1852)
-..-.+|+.+...+..-+...... .-.-...+..+-+..|+.=+...+.++-.|...=-+-==.++-+++.+++++++
T Consensus 254 ~~a~a~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 254 AAAEGTADSVKKALQNGGSLDVLP--EVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHHHHhcCCCccchh--hhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Confidence 222223333333322111100000 000000112233333333333333333333222111112234444455444444
Q ss_pred Hhc-----cccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhH
Q 000211 1490 VIS-----SEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADA 1540 (1852)
Q Consensus 1490 i~~-----~~~~~~el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaea 1540 (1852)
|.. ......++...+.+-+.|..++++.-=+...+-....-+.+|+-.+++
T Consensus 332 i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~ 387 (754)
T TIGR01005 332 IRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAA 387 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH
Confidence 321 122234555555566666666665544444444445555566655555
No 91
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.15 E-value=1.1e+02 Score=39.09 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=80.2
Q ss_pred HhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhH---HHhhhhhhhhH----HHHHHHHHHHHHHhccchhHH
Q 000211 991 ENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVV---TEEFDRSKQTI----SELTEENRALMVALQDKSEES 1063 (1852)
Q Consensus 991 e~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v---~~E~~~tK~~~----~el~~En~al~~slqdK~ees 1063 (1852)
.+|-.....|+-+.-.++++.+.|.....++-+-+..+... ..-++..|... ++|.+=++.....||+|.-.-
T Consensus 176 ~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI 255 (511)
T PF09787_consen 176 GNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLI 255 (511)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 35555666777777777777777776666544433332221 11222222111 122222222223345554321
Q ss_pred HHH--------------HHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhh
Q 000211 1064 VKL--------------ALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVL 1129 (1852)
Q Consensus 1064 ~~~--------------~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~d 1129 (1852)
-.| .-|++.|+.-.+++++++...+.-.+++.....+...++.....++..+-.+.+....-....
T Consensus 256 ~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 256 ESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 111 134666666666677777666666666666667777776666666655555554443333333
Q ss_pred hHhhhhhHHhhhhhhHHHH
Q 000211 1130 TKENQDLMVSLQNKSEEAA 1148 (1852)
Q Consensus 1130 lEea~sl~~~Lls~sEe~~ 1148 (1852)
..+-....+++..+.++..
T Consensus 336 e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELS 354 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555444
No 92
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.93 E-value=72 Score=38.56 Aligned_cols=180 Identities=21% Similarity=0.233 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH----h-----HhhhhcccchhhHHHHHHHHHhhHHh-----hhh----hhhccHH
Q 000211 906 EVLQRNACQKIRQLMQEKKALIDEK----D-----RAEMSFSKSESDIVLVKQKFEHDLRN-----MID----KQSVSNA 967 (1852)
Q Consensus 906 e~~q~~~c~kil~l~~ek~~l~~e~----d-----~~~~~~~~aes~~~~~kqk~e~d~~~-----m~~----kl~~s~~ 967 (1852)
=++-+-+|.....-|.+-+.+..+- + ..+-|.++.+..-+.|...|..-=.. ... .....+-
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klleg 144 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEG 144 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456679999998888877665543 2 34667777777777777666542111 000 0112344
Q ss_pred HHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHH
Q 000211 968 LLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTE 1047 (1852)
Q Consensus 968 l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~ 1047 (1852)
|.+.|...++.|-.-..+-...++.-...-+++....+.|..++.+|.. ++.+|-..+ ..|++++|..++++..
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~----~~~e~~~~d--~~eL~~lk~~l~~~~~ 218 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ----LEDELEDCD--PTELDRAKEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 4555555555555544444455555555555555555566655555432 233333333 3455566655555555
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhh
Q 000211 1048 ENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR 1091 (1852)
Q Consensus 1048 En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~ 1091 (1852)
+....-..+.++.++-..+...|+..+...+-+..+.......+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555455555555555554444444444444444444443333
No 93
>PRK09039 hypothetical protein; Validated
Probab=84.82 E-value=33 Score=41.53 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=82.3
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHhHHHhh
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRH-----------------MLGELQNLRNEH 518 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q-----------------~~~ElqnLr~Eh 518 (1852)
.+...|+.+|.+|..-+...+.....|+..+.++...|+++...-+..+.+ ...++.+++.++
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~ 132 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVS 132 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777777777777766642221111 114577777888
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHH-----HHHHHHH
Q 000211 519 SSCLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAV-----NQLQKDL 589 (1852)
Q Consensus 519 S~~l~tIs~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aa-----erLQeef 589 (1852)
+..-..|.-|.+||+.|+ .|+....+.+++.+....++..+--. | +.|+++|.+. +++..+|
T Consensus 133 se~~~~V~~L~~qI~aLr----~Qla~le~~L~~ae~~~~~~~~~i~~----L-~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 133 ARALAQVELLNQQIAALR----RQLAALEAALDASEKRDRESQAKIAD----L-GRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhHHHH
Confidence 888888999999998876 45777777777776666444443322 2 5677777766 4555555
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.78 E-value=1.4e+02 Score=38.98 Aligned_cols=194 Identities=16% Similarity=0.265 Sum_probs=106.9
Q ss_pred hHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHh
Q 000211 767 NQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKID 846 (1852)
Q Consensus 767 nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~ 846 (1852)
++++-..+.++...|.-|-++|.+.+..=..-.+-+.+|.+-.-+-..|.+.+..=.=-+-+.-..+.-++.|++..-.|
T Consensus 230 ~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE 309 (581)
T KOG0995|consen 230 FTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555566677777777777777666555555566666666666666666655443333444555555666666666555
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 847 FDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKAL 926 (1852)
Q Consensus 847 ~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l 926 (1852)
...+...++.|+..+. += +||+ .| |-+...|+..|
T Consensus 310 ~e~lq~~~d~Lk~~Ie-------~Q------~iS~--------------~d------------------ve~mn~Er~~l 344 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIE-------LQ------GISG--------------ED------------------VERMNLERNKL 344 (581)
T ss_pred HHHHHHHHHHHHHHHH-------hc------CCCH--------------HH------------------HHHHHHHHHHH
Confidence 5555555555544332 11 3332 22 23344555666
Q ss_pred HHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHH-HHHHhhhhccchHHHHhHhhhhhccccchh
Q 000211 927 IDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLR-FEAVADKLKVSSEVEENNAQRHTDLFSDLD 1005 (1852)
Q Consensus 927 ~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~-~e~~~~k~k~~se~ee~y~~~~~~l~s~l~ 1005 (1852)
..+-+.+++-++.--.++-..+-+++.=+...-+++--=+.+.++|-+. .+.-++ .+-+|....+..++.=+
T Consensus 345 ~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-------~~~~pe~~~~~~~d~k~ 417 (581)
T KOG0995|consen 345 KRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN-------LERNPERAATNGVDLKS 417 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCcCCccCccccccchh
Confidence 6666666655555555555556556666666666666566667777666 222222 23344455555555544
Q ss_pred HHHHHHH
Q 000211 1006 YLEVELQ 1012 (1852)
Q Consensus 1006 ~~e~elq 1012 (1852)
+..+-|.
T Consensus 418 ~V~~~l~ 424 (581)
T KOG0995|consen 418 YVKPLLK 424 (581)
T ss_pred HhHHHHH
Confidence 5444443
No 95
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.40 E-value=53 Score=39.79 Aligned_cols=201 Identities=19% Similarity=0.183 Sum_probs=100.2
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHH-HHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHH
Q 000211 1176 DELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKI-AELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQS 1254 (1852)
Q Consensus 1176 e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~-~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ 1254 (1852)
..+-++|.|++.++.-.--++... +|-+-| -+|...|..++.........-......+.+|+|.|.-=.+-|+-
T Consensus 55 ~qmtkty~Didavt~lLeEkerDL-----elaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ 129 (306)
T PF04849_consen 55 SQMTKTYNDIDAVTRLLEEKERDL-----ELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQI 129 (306)
T ss_pred hhhhcchhhHHHHHHHHHHHhhhH-----HHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778777766544444332 333444 33566666665554444444344455566777766433322222
Q ss_pred hhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHH
Q 000211 1255 ERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVR 1334 (1852)
Q Consensus 1255 ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvr 1334 (1852)
.....++.+..- .-.+.+ .+..-..+..+.--+..|+..+.+|+.+|-..+.+++.++
T Consensus 130 ys~~~ee~~~~~-~~~~~~--~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~------------------- 187 (306)
T PF04849_consen 130 YSNDDEESEPES-SESTPL--RRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLK------------------- 187 (306)
T ss_pred cCcHhhhccccc-CCCccc--cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 222222111100 000000 1111222345556789999999999999997776666222
Q ss_pred HHHHHHHHHHHHH----HHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Q 000211 1335 LIFTRTQYEAWVE----ELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENR 1410 (1852)
Q Consensus 1335 iiF~KeQYEtkvq----EL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR 1410 (1852)
....+||-+-+ +-+.||+....+...| -++|..+.-.=+.+-+++..|+..|-.++..+....++|-
T Consensus 188 --~et~~~EekEqqLv~dcv~QL~~An~qia~L-------seELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnE 258 (306)
T PF04849_consen 188 --TETDTYEEKEQQLVLDCVKQLSEANQQIASL-------SEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENE 258 (306)
T ss_pred --HHHhhccHHHHHHHHHHHHHhhhcchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11223333332 2334444444443333 3444444444445566666666666666666666555544
Q ss_pred hh
Q 000211 1411 VL 1412 (1852)
Q Consensus 1411 ~L 1412 (1852)
+|
T Consensus 259 eL 260 (306)
T PF04849_consen 259 EL 260 (306)
T ss_pred HH
Confidence 43
No 96
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.03 E-value=1.6e+02 Score=39.16 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=138.0
Q ss_pred HHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHH
Q 000211 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEM 1324 (1852)
Q Consensus 1245 L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El 1324 (1852)
|+|=--+++.+++....||-.+.+|+++|.--.-....++.-..=..+-. .+..+.+.++-.+...+.+.|--.-+...
T Consensus 287 Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~-~~~~e~s~~~~l~~~~~t~~s~~~~~~r~ 365 (716)
T KOG4593|consen 287 LQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLME-KLVNEQSRNANLKNKNSTVTSPARGLERA 365 (716)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHH-HHHHHHHHHhhhccccccccCcccchHHH
Confidence 56666677888888889999999999999887776666553222223333 33334444454555666444332222222
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHH
Q 000211 1325 HELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDS 1404 (1852)
Q Consensus 1325 ~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELea 1404 (1852)
-. +..++++=.-+.+-.++++-+|-.+|.-- ..++.--+ ..++-....+...-+...-+..+|.-
T Consensus 366 ~q-~lke~~k~~~~ite~~tklk~l~etl~~~---~~~~~~~~-----------tq~~Dl~~~~~~~~~~~krl~~~l~~ 430 (716)
T KOG4593|consen 366 RQ-LLKEELKQVAGITEEETKLKELHETLARR---LQKRALLL-----------TQERDLNRAILGSKDDEKRLAEELPQ 430 (716)
T ss_pred HH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHH-----------HHHHHHHHHHhhccchHHHHHHHhHH
Confidence 22 22234444455555666666665554311 11111111 11122222222222222333333333
Q ss_pred HHHhhHhhhhchhhhhhchhhhhhhhHHhhh----hhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHH
Q 000211 1405 AIAENRVLFHENNSLIAQSEEYKSRAETMAD----NYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLK 1480 (1852)
Q Consensus 1405 siaekR~L~nand~~~AElEE~Kqr~E~~l~----~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk 1480 (1852)
+..+ ...++-+.-.+..++...+++.- .....+.....=.-.+|-|-..+.+.++.|.+.+.+.+...
T Consensus 431 ~tk~----reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~---- 502 (716)
T KOG4593|consen 431 VTKE----REQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLR---- 502 (716)
T ss_pred HHHH----HHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 3333 12222222333333333333311 11122222333334566677777777888888777776532
Q ss_pred HHHHhhhHHHhccccchhHHHHHHHHh----HHHHHHHHHHHhhhhhhcchhhhh----------HHhhhhhhHHHHhhh
Q 000211 1481 AKLAEQHAQVISSEGYIDEQKMLQNQC----NELRRKLSEQILKTEEFRNLSIHL----------KELKDKADAECLKLH 1546 (1852)
Q Consensus 1481 ~kl~e~~~~i~~~~~~~~el~~l~~~~----~eltqklseqilkteefknlsihl----------kelkdkaeaec~~~~ 1546 (1852)
.|++ .|..++..|...+ -.++.|+..+-.-.--||+|-+-. |.--..-.|||-..|
T Consensus 503 e~i~----------~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk 572 (716)
T KOG4593|consen 503 EKIE----------QYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLK 572 (716)
T ss_pred hHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3333444444444 566677777766666777763321 122234578888888
Q ss_pred h---hcccCCCcch
Q 000211 1547 E---KRESEGLPTG 1557 (1852)
Q Consensus 1547 e---k~e~eg~~~a 1557 (1852)
+ ..+.-+|+++
T Consensus 573 ~~l~~le~~~~~~~ 586 (716)
T KOG4593|consen 573 ERLTALEGDKMQFR 586 (716)
T ss_pred HHHHHHhccCCccc
Confidence 8 5555556553
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.29 E-value=16 Score=41.23 Aligned_cols=164 Identities=20% Similarity=0.298 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHH-------HHhhcchhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhH---HhhHHhhhhccccc
Q 000211 709 GEIRLMKERMDELS-------HQLELSTESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMA---LQNQLLESNLQDVT 778 (1852)
Q Consensus 709 ~~i~~mker~~~l~-------~ql~~s~~~~~~l~~~l~~a~d~~~sl~e~~~~~i~kc~d~a---~~nq~lea~lq~~~ 778 (1852)
..|+-||+.|.++. ..+.....-+..|+.-|..|.-++..|..--+.|.--.-.++ .+-..++..|.++.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444 444444445667777888888888777766665553222221 12345688888888
Q ss_pred hhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHH
Q 000211 779 CENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQ 858 (1852)
Q Consensus 779 ~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq 858 (1852)
.|+..|.|++.. +..+...+..+|+.+.-| +-.|-++.+--|...+..+.+.++.--..|.+.-+..+==.
T Consensus 107 ~e~evL~qr~~k---le~ErdeL~~kf~~~i~e------vqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 107 WEHEVLEQRFEK---LEQERDELYRKFESAIQE------VQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 888888888765 445677777777776544 34455555666777888888888888888887655544334
Q ss_pred HHHHHHHHHHHHhhhhccccccc
Q 000211 859 RTINNLQNKMHDMLSSYGESFSE 881 (1852)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~~ 881 (1852)
..+..+..++.++|.++|..|..
T Consensus 178 ~~~~~v~~~l~~~l~~KN~~I~~ 200 (201)
T PF13851_consen 178 AALSQVSKKLEDVLDSKNQTIKD 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777889999999999987765
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.65 E-value=47 Score=36.28 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=65.2
Q ss_pred hhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHH
Q 000211 1004 LDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDE 1083 (1852)
Q Consensus 1004 l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdE 1083 (1852)
+=+++.+|+.+-+++--|-+.|..|.+=-+-...-+..+.-=.+-.++.+..|+. +...++.+++.|.+-|.++-.+
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~---el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEE---ELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888777665444443444433333333455555543 3344556666666666666666
Q ss_pred HHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHH
Q 000211 1084 LLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSE 1121 (1852)
Q Consensus 1084 l~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqe 1121 (1852)
........+.++++|++|-+-.+.....|+..-+++..
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 65555555666666655555555444444444444333
No 99
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.56 E-value=2.2e+02 Score=39.62 Aligned_cols=127 Identities=27% Similarity=0.346 Sum_probs=76.0
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHH
Q 000211 1181 RAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRD 1260 (1852)
Q Consensus 1181 k~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLre 1260 (1852)
+...++.-+...+.+-.++...-++..+.+.++.++-.++-.++++-+..-.-...+++.+++...-.+..+...+.-.+
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d 375 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVD 375 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444555566666655555555555555444344455677788888888888888888888
Q ss_pred HhhHHHHHhhhhh-hhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhh
Q 000211 1261 ELKNVVTDLTSQL-NEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEE 1310 (1852)
Q Consensus 1261 eLE~tV~~L~skL-dEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~k 1310 (1852)
.++.+|.++..++ ++..-++ ++-.+++..|+.+|-.++.-.++...|
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~---~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSEL---EERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777 3333222 334456667777777777666544433
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.52 E-value=39 Score=41.82 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhh-------
Q 000211 1342 YEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH------- 1414 (1852)
Q Consensus 1342 YEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~n------- 1414 (1852)
++..+.++..+|.-...-+..+..++..+... .......+...+...+..+++++..+-+..+.+-.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~------~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~ 239 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPD------QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEP 239 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45556666666666666666666665433211 12234455666667777777776665555433322
Q ss_pred --------chhhhhhchhhhhhhhHHhhhhhhhh
Q 000211 1415 --------ENNSLIAQSEEYKSRAETMADNYGEH 1440 (1852)
Q Consensus 1415 --------and~~~AElEE~Kqr~E~~l~~~~Ee 1440 (1852)
.+..+..++-+-..+.......|.++
T Consensus 240 ~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~ 273 (498)
T TIGR03007 240 VLLAGSSVANSELDGRIEALEKQLDALRLRYTDK 273 (498)
T ss_pred CcCcccccCCCchHHHHHHHHHHHHHHHHHhccc
Confidence 13344455556666666666777766
No 101
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.31 E-value=1.9e+02 Score=38.74 Aligned_cols=228 Identities=19% Similarity=0.250 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHH
Q 000211 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELT 1046 (1852)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~ 1046 (1852)
....+|+.+++.+-.-+..+.-.|+-+.++=.-+.+.=-.+-.+|+++.-+|+.|-.+|-.|...-. .-|++++.|.
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq---~DKq~l~~LE 494 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ---QDKQSLQQLE 494 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3445888898888888888899999999987777777678888999999999988888777655433 3444444443
Q ss_pred HH-----HHHHHHHhccchhHHHHHHHHHHhHHH-----hhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhh
Q 000211 1047 EE-----NRALMVALQDKSEESVKLALEVDSFKQ-----SFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFD 1116 (1852)
Q Consensus 1047 ~E-----n~al~~slqdK~ees~~~~~El~slK~-----s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd 1116 (1852)
.. -++.-+--|=.+|-..+...|-..-+. +-.....|- .|.=+.+++.++..|--+|-.|..++..+.
T Consensus 495 krL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~--~r~r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 495 KRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAES--CRQRRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111111122222222222111110 000022221 233335666666666666666666665555
Q ss_pred HhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHH----
Q 000211 1117 QQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEK---- 1192 (1852)
Q Consensus 1117 ~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~---- 1192 (1852)
.+.++|-......-.+.-.||+-|.-. ++.-+-|..-|.++++.+-.|=+---|.-.+|+..
T Consensus 573 ~~~~~lr~~~~e~~~~~e~L~~aL~am--------------qdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 573 SELQELRKYEKESEKDTEVLMSALSAM--------------QDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQL 638 (697)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544211111111222333333333 33333344445666666655555555555555554
Q ss_pred HHhhhhhhhhhhHHHHHHHHH
Q 000211 1193 QQQLIDFDQQNSEMIQKIAEL 1213 (1852)
Q Consensus 1193 ~~~e~e~~~enSeL~~~~~~L 1213 (1852)
..+|.++.++++.+...+..+
T Consensus 639 ~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 639 RKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 445666666666555555443
No 102
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.89 E-value=1e+02 Score=35.36 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=29.9
Q ss_pred HHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhh
Q 000211 1053 MVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSA 1107 (1852)
Q Consensus 1053 ~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~e 1107 (1852)
...|.+....-.+.-.|+.+|..-++.+-+.+..--.-......++...-..+++
T Consensus 21 ~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 21 EEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777776666554444334444444443333333
No 103
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.45 E-value=26 Score=37.81 Aligned_cols=114 Identities=25% Similarity=0.272 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHH
Q 000211 1242 KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSEL 1321 (1852)
Q Consensus 1242 k~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL 1321 (1852)
.......+.+|.++..=...|+..|..+..+|.+....+..-+...+....|...+.-||.++- .....|
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele----------~ae~~L 96 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE----------EAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH----------HHHHHH
Confidence 3334444444444444444444444444444444444444344444444455555555555544 233445
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhcc
Q 000211 1322 SEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVD 1369 (1852)
Q Consensus 1322 ~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qD 1369 (1852)
++.-+++.-+|++. .+||-+|+.|.++..-..+-.++|..||.+
T Consensus 97 ~e~~ekl~e~d~~a----e~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 97 KETTEKLREADVKA----EHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHh----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55555555555543 456666666666666655556666555544
No 104
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.16 E-value=2.7e+02 Score=39.63 Aligned_cols=109 Identities=21% Similarity=0.309 Sum_probs=76.4
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHH--
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMR-- 536 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Le-- 536 (1852)
..++..|.....-|+-+|..-++++..|...+.--+-+-..+++.++ .+.+..+|+.||..|.-.|+.+...|..+.
T Consensus 219 e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k-~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~ 297 (1294)
T KOG0962|consen 219 EVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEK-LLKQVKLLDSEHKNLKKQISRLREKILKIFDG 297 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 66788888888899999999999988888777666655555555433 346788899999999999999998887443
Q ss_pred --HHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHH
Q 000211 537 --LDVDEQVLRFSEERRDLESLNKELERRAVSAE 568 (1852)
Q Consensus 537 --eel~~Q~~rF~edl~al~~~kvEqEqRAI~AE 568 (1852)
.++.+=...|++=...+...-.+.|++--.++
T Consensus 298 t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 298 TDEELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred chHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23444445555555555555555555554444
No 105
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.15 E-value=2.1e+02 Score=38.30 Aligned_cols=526 Identities=21% Similarity=0.223 Sum_probs=244.1
Q ss_pred hccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccch
Q 000211 751 EYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLR 830 (1852)
Q Consensus 751 e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~ 830 (1852)
+--.-|.++|.-|++++-. ++-.|.+...++..-...+.--| +|++=+..+..+...|...- ..++
T Consensus 53 ~~s~n~~~~s~~~~~~~~l-------~~Lqns~kr~el~~~k~~~i~~r----~~~~~~dr~~~~~~~l~~~q---~a~~ 118 (716)
T KOG4593|consen 53 ERSENITSKSLLMQLEDEL-------MQLQNSHKRAELELTKAQSILAR----NYEAEVDRKHKLLTRLRQLQ---EALK 118 (716)
T ss_pred hhhccchhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3345688999888877643 34456665555544444444433 45555555555554443221 2333
Q ss_pred hhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHH---HHhhhhccccccccccccccccccccccCHHHHHHHHHH
Q 000211 831 RETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKM---HDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEV 907 (1852)
Q Consensus 831 ~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl---~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~ 907 (1852)
..=..+|+.++-.+......- .......+.+++++ ..+-.-||.+++. +..+--.+...-+++.+.++.+++
T Consensus 119 ~~e~~lq~q~e~~~n~~q~~~---~k~~el~~e~~~k~ae~~~lr~k~dss~s~--~q~e~~~~~~~~~~~~s~l~~~ek 193 (716)
T KOG4593|consen 119 GQEEKLQEQLERNRNQCQANL---KKELELLREKEDKLAELGTLRNKLDSSLSE--LQWEVMLQEMRAKRLHSELQNEEK 193 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555544443221111 01122233444443 3445588888888 555555666677777777777775
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhc
Q 000211 908 L---QRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLK 984 (1852)
Q Consensus 908 ~---q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k 984 (1852)
. |+.-|++-.+.+.++.+--.++..-..-..-.+.-+..- +.+..|+-++.-==--+.+|...+...+..++
T Consensus 194 e~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~-----~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~ 268 (716)
T KOG4593|consen 194 ELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLS-----EELEAINKNMKDQLQELEELERALSQLREELA 268 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566677777777766655444433222222111111110 11111111111000001222222333333222
Q ss_pred cchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHH------------
Q 000211 985 VSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL------------ 1052 (1852)
Q Consensus 985 ~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al------------ 1052 (1852)
-+.+-.+ -+..|-.|.-.|.+-...+...+-+...|..||-.+
T Consensus 269 ~~re~~~-------------------------tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~ 323 (716)
T KOG4593|consen 269 TLRENRE-------------------------TVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQ 323 (716)
T ss_pred HHHHhhh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 2222111 122333344444444444444444444444444333
Q ss_pred -HHHhccchhHHHHHHHHHHhHHH------hhHhhhHHHHHHHHhh-hhhHhhHhhhh---hhhhhhhhhhhhhhHhhHH
Q 000211 1053 -MVALQDKSEESVKLALEVDSFKQ------SFQSLHDELLVERSLR-DDLKSAVSDIT---SQLSAKHSQLLDFDQQKSE 1121 (1852)
Q Consensus 1053 -~~slqdK~ees~~~~~El~slK~------s~qSLhdEl~aersl~-edl~~~vsdLa---SEL~eK~~sL~sfd~enqe 1121 (1852)
|.+++++.-.+-+++.|...-+. ++-|-.+-+...+.+. +++.+ ++-+| +.+-+.|..| ..
T Consensus 324 ~~~~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~-~~~ite~~tklk~l~etl-------~~ 395 (716)
T KOG4593|consen 324 EMGSLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQ-VAGITEEETKLKELHETL-------AR 395 (716)
T ss_pred hhhccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHH-------HH
Confidence 34888888888888887654332 2233333222222222 23322 33333 3333333333 33
Q ss_pred HHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHH----HHhhhhhhHHHHHHHHHhhh
Q 000211 1122 LIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDE----LKSRAIDISSQLNEKQQQLI 1197 (1852)
Q Consensus 1122 Ll~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~----LQsk~~Dves~Ln~~~~~e~ 1197 (1852)
+..+++..+-.+..+.-.....+...-.++..++++-.-.+.+.|=....+++..+ .-..+-.+...++..=..+-
T Consensus 396 ~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~ 475 (716)
T KOG4593|consen 396 RLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEH 475 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455544444322222222222222222211 22334445555555556666
Q ss_pred hhhhhhhHHHHHHHHHh--hhHHHH-HHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhh
Q 000211 1198 DFDQQNSEMIQKIAELT--SENQAL-MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN 1274 (1852)
Q Consensus 1198 e~~~enSeL~~~~~~L~--~en~a~-mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLd 1274 (1852)
++.+.++.|.....+|- -.-... ---+.+| ..-+..++.|=+.+| . +-.-..|....+
T Consensus 476 ~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~--------------~ke~~~Le~En~rLr---~--~~e~~~l~gd~~ 536 (716)
T KOG4593|consen 476 ELKDLQSQLSSREQSLLFQREESELLREKIEQY--------------LKELELLEEENDRLR---A--QLERRLLQGDYE 536 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--------------HHHHHHHHHHHHHHH---H--HHHHHHHhhhhh
Confidence 77777777776666641 110000 0001111 222444444444444 3 334456778888
Q ss_pred hhhhhhhcccccch--HHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhh-hhHHHHHHHHHH-HHHHHHHH
Q 000211 1275 EKHCQLLDLDQQKS--ELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLA-VDVRLIFTRTQY-EAWVEELV 1350 (1852)
Q Consensus 1275 Ek~~qL~~fd~~~~--EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A-~dvriiF~KeQY-EtkvqEL~ 1350 (1852)
++.+.++.|-.... ==...|++...|..+++ .|..-|..|++.-.+ .|+-|+|-.-.- --.|..|+
T Consensus 537 ~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~----------~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk 606 (716)
T KOG4593|consen 537 ENITRVLHMSTNPTSKARQIKKNRLEELQAELE----------RLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLK 606 (716)
T ss_pred hhccceeeecCCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHH
Confidence 99999988854444 22345556666666665 334444455533333 566666655442 24566666
Q ss_pred HHHhhchhhHHH
Q 000211 1351 QQVYSTDRLLTE 1362 (1852)
Q Consensus 1351 ~QL~~Skk~~eE 1362 (1852)
+|+.+.-+-...
T Consensus 607 ~ev~s~ekr~~r 618 (716)
T KOG4593|consen 607 KEVESAEKRNQR 618 (716)
T ss_pred HHHHHHHHHHHH
Confidence 666665544333
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=80.25 E-value=2.7e+02 Score=39.17 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=129.5
Q ss_pred cccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccch----HHHHhHhhhhhccc---cchhHHHH
Q 000211 937 FSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSS----EVEENNAQRHTDLF---SDLDYLEV 1009 (1852)
Q Consensus 937 ~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~s----e~ee~y~~~~~~l~---s~l~~~e~ 1009 (1852)
+.+-.|++..|+.|.++ |++++.--++|.+-+.+|-..++..-.-++... +.|++.+-..+.++ -+|+.|+.
T Consensus 1196 ~gay~s~f~~me~kl~~-ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~ 1274 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEE-IRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQR 1274 (1758)
T ss_pred chhhHhHHHHHHHHHHH-HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHH
Confidence 34667899999999875 888888888998888887777777666665543 35666666666666 56777777
Q ss_pred HHHHhhhccHHHHHHHHhhhh--HHHhhhhhhhhHH------HHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHh--
Q 000211 1010 ELQQLSSKNRDLAQEILALQV--VTEEFDRSKQTIS------ELTEENRALMVALQDKSEESVKLALEVDSFKQSFQS-- 1079 (1852)
Q Consensus 1010 elq~l~s~n~~l~~~i~~l~~--v~~E~~~tK~~~~------el~~En~al~~slqdK~ees~~~~~El~slK~s~qS-- 1079 (1852)
+---|.---..|.+.+..|.. +.-=|+.|....+ +.+..--..++|.-|.+ +...=++.-|+.|..
T Consensus 1275 ~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s----R~e~l~~k~k~~f~~~~ 1350 (1758)
T KOG0994|consen 1275 EFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS----RVEELLVKQKGDFGGLA 1350 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh----HHHHHHHHhhhcccccc
Confidence 766555555555555444332 1112333332222 22222222233333333 222222333444444
Q ss_pred ----hhHHHHHHHHhhhhhHhhHhhhhhhh------------------------------------------hhhhhhhh
Q 000211 1080 ----LHDELLVERSLRDDLKSAVSDITSQL------------------------------------------SAKHSQLL 1113 (1852)
Q Consensus 1080 ----LhdEl~aersl~edl~~~vsdLaSEL------------------------------------------~eK~~sL~ 1113 (1852)
+.+++.++.++.. ++.+.-++ .+....|.
T Consensus 1351 ~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1351 ENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLR 1425 (1758)
T ss_pred cccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHH
Confidence 3344444443332 11111110 02233444
Q ss_pred hhhHhhHHHHHHHH---hhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHHHhhhhhhHH
Q 000211 1114 DFDQQKSELIQKTA---VLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDELKSRAIDISS 1187 (1852)
Q Consensus 1114 sfd~enqeLl~~~~---~dlEea~sl~~~Lls~sEe~~k~A~t~~q-~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves 1187 (1852)
++-.|-.+++.+++ ...-+++..+..++-+....+..+-..+. +++.++++.+=|-.-..+-+.++-....|..
T Consensus 1426 ~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~ 1503 (1758)
T KOG0994|consen 1426 SKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLA 1503 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 44444455544443 22334455555555555555554444444 7788888887777777777777766655543
No 107
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.07 E-value=1.8e+02 Score=37.06 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=23.3
Q ss_pred HHHhhHHHHHhhhhhhhhhhhhhcccccc
Q 000211 1259 RDELKNVVTDLTSQLNEKHCQLLDLDQQK 1287 (1852)
Q Consensus 1259 reeLE~tV~~L~skLdEk~~qL~~fd~~~ 1287 (1852)
..++|.++.-||.-|-.|+++|..+.-.+
T Consensus 387 ~~elE~rl~~lt~~Li~KQ~~lE~l~~ek 415 (511)
T PF09787_consen 387 WNELESRLTQLTESLIQKQTQLESLGSEK 415 (511)
T ss_pred cHhHHHHHhhccHHHHHHHHHHHHHHhhh
Confidence 46899999999999999999996664433
No 108
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=79.25 E-value=1.3e+02 Score=34.82 Aligned_cols=83 Identities=23% Similarity=0.374 Sum_probs=58.8
Q ss_pred HHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHH----HHHHhccchhHHHHHHHHHHhHHHhhHhhhHHH
Q 000211 1009 VELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRA----LMVALQDKSEESVKLALEVDSFKQSFQSLHDEL 1084 (1852)
Q Consensus 1009 ~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~a----l~~slqdK~ees~~~~~El~slK~s~qSLhdEl 1084 (1852)
.+.+.+.++...+..+...+..|+.|+.+ +++.+..+.+. .-..++.--.+--.+...|+|+..||..||.--
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek---~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEK---TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 55788888899999999999999999988 45555544432 233344444455567788999999999999877
Q ss_pred HHHHHhhhhh
Q 000211 1085 LVERSLRDDL 1094 (1852)
Q Consensus 1085 ~aersl~edl 1094 (1852)
...+.-.++.
T Consensus 100 ek~K~vi~~~ 109 (207)
T PF05010_consen 100 EKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHH
Confidence 6666555444
No 109
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=79.14 E-value=18 Score=40.24 Aligned_cols=152 Identities=15% Similarity=0.250 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhc----c---hhhHHHHHHHHHHHhhhhhhhhhccchhhhccchhHHhhHHhhhhc-cccc
Q 000211 707 ASGEIRLMKERMDELSHQLEL----S---TESNELLMQRLQTAMNDIHFLNEYKASCIAKCNDMALQNQLLESNL-QDVT 778 (1852)
Q Consensus 707 a~~~i~~mker~~~l~~ql~~----s---~~~~~~l~~~l~~a~d~~~sl~e~~~~~i~kc~d~a~~nq~lea~l-q~~~ 778 (1852)
+...|..+..||++|+.++=- . ++.---.+.+.+.+|.-+.+=+|-=-.|+-|++++ |..|.-+. .+++
T Consensus 3 ~~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL---~~YLDP~~~e~~~ 79 (174)
T PF07426_consen 3 EMSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEEL---NKYLDPNFIEEIQ 79 (174)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HHHcCchhhhhcc
Confidence 356789999999999999921 1 22222345577788888877777777888888887 55665442 2222
Q ss_pred hhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHH
Q 000211 779 CENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQ 858 (1852)
Q Consensus 779 ~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq 858 (1852)
--+..=.+=|--.|-.+..+ -+|-+.-..|.-.|.-+. +| ..-.+.++|..++.+..+.+
T Consensus 80 l~~~~K~~~ILa~e~~i~~~-------~~~Leki~~L~pvL~se~-----i~--------~vp~~~~kL~~L~~~~~~Q~ 139 (174)
T PF07426_consen 80 LPDSAKLQIILAEEDEIKST-------AELLEKIKSLEPVLDSES-----IR--------NVPELCDKLQKLSQIHLEQQ 139 (174)
T ss_pred cchHHHHHHHHHccHHHHHH-------HHHHHHHHHhhhhcCcHH-----Hh--------hhHHHHHHHHHHHHHHHHHH
Confidence 11111111111122222222 334444455554444333 22 24456788999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccccc
Q 000211 859 RTINNLQNKMHDMLSSYGESFSE 881 (1852)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~~ 881 (1852)
.-+..|.+.++.++..|+.-|..
T Consensus 140 e~~~~ls~~~~~Ll~~YN~ii~~ 162 (174)
T PF07426_consen 140 EESEELSEEVQELLQQYNKIILL 162 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987665
No 110
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=78.12 E-value=1.3e+02 Score=38.66 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHh
Q 000211 1223 SLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLES 1302 (1852)
Q Consensus 1223 ~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLes 1302 (1852)
.|+|-..+-+.+.+.+.-=-..|..+++.+.....++...-.++.++...+++.+.+|-.++....++..|+.++..+..
T Consensus 281 ~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~ 360 (563)
T TIGR00634 281 EVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEE 360 (563)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333333333444444445557778888888888888888888888888888888888888888888888887777777
Q ss_pred hhh
Q 000211 1303 EKS 1305 (1852)
Q Consensus 1303 e~S 1305 (1852)
++.
T Consensus 361 ~l~ 363 (563)
T TIGR00634 361 ELD 363 (563)
T ss_pred HHH
Confidence 665
No 111
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=77.03 E-value=92 Score=34.44 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=80.7
Q ss_pred chhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000211 458 ADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1852)
Q Consensus 458 t~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1852)
++.|+++-....++|+...+.|++.+..+ -+|+....+-.+ |-.. .|...+.+-+.+.+
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~----~e~e~~L~~Ar~--------------EA~~---Ii~~A~~~a~~~~~ 88 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAEKLKEDAALLF----EQTNAQIKKLET--------------LRSQ---MIEESNEVTKKIIQ 88 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--------------HHHH---HHHHHHHHHHHHHH
Confidence 36788888888889998888888766544 445544333222 2222 78888889999999
Q ss_pred HHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 000211 538 DVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQVLSMYQTN 603 (1852)
Q Consensus 538 el~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~LS~Qm~S~fe~N 603 (1852)
+...++....+-+....+...++|+++ |...|+.++--||++++|.|=..
T Consensus 89 ea~~eA~~ea~r~~~~A~~~Ie~Ek~~----------------Al~elr~eva~Lav~iAsk~~~~ 138 (154)
T PRK06568 89 EKTKEIEEFLEHKKSDAIQLIQNQKST----------------ASKELQDEFCDEVIKLVSEYFQS 138 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777777777654 55678999999999999999543
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.65 E-value=1.2e+02 Score=32.99 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=77.9
Q ss_pred hhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHH
Q 000211 1256 RSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRL 1335 (1852)
Q Consensus 1256 rsLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvri 1335 (1852)
|.=++++.-++..+..++....... ..+.+.+.+|+.+++ .++. .|..+...|.+.++.+...+=+.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~----------~~~E~EI~sL~~K~~--~lE~-eld~~~~~l~~~k~~lee~~~~~ 72 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQEN----------EQKEQEITSLQKKNQ--QLEE-ELDKLEEQLKEAKEKLEESEKRK 72 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334455555555555555554443 333344444444444 2222 13367778888888877754333
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Q 000211 1336 IFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRS 1400 (1852)
Q Consensus 1336 iF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLes 1400 (1852)
-.-+++..+|+-|-.+|.-+++.+.+...|+.++.-..++.-..=...-.+...+..++.+|..
T Consensus 73 -~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 73 -SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred -HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2334899999999999999999999999999888765554322222233344455555555543
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.54 E-value=41 Score=35.79 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhc
Q 000211 1343 EAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQ 1422 (1852)
Q Consensus 1343 EtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AE 1422 (1852)
=++|-+|.++-.-...+.+.+..++......+.+-...=..+-++++.+...+..+++...++-.+.+.+..++...+.|
T Consensus 37 in~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 37 INCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899998888888888888888777777665555555666777777777777777777777777777777777777
Q ss_pred hhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhh
Q 000211 1423 SEEYKSRAETMADNYGEHKSQLALEVERMKQLL 1455 (1852)
Q Consensus 1423 lEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL 1455 (1852)
+.--|......-..|.-+..+-..|+++||.=|
T Consensus 117 ~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 117 LQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777888888888888888888999888754
No 114
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.24 E-value=3.1e+02 Score=37.64 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=65.8
Q ss_pred hHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchh-------hhhhhhH
Q 000211 1359 LLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE-------EYKSRAE 1431 (1852)
Q Consensus 1359 ~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElE-------E~Kqr~E 1431 (1852)
-..+|+.|+-|+..-++.--.+=-.--++|..|-..|..+.-+.....+.-+.....++.++.|+. .-+-.+.
T Consensus 439 ~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 439 EHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777666665544444667889999999999999999999999999999999999988 2222345
Q ss_pred HhhhhhhhhhhhhHHHHH
Q 000211 1432 TMADNYGEHKSQLALEVE 1449 (1852)
Q Consensus 1432 ~~l~~~~Eeksk~a~Eve 1449 (1852)
+..++++....++...+.
T Consensus 519 ~~~qs~~~~~~~l~~~l~ 536 (980)
T KOG0980|consen 519 NLAQSHNNQLAQLEDLLK 536 (980)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666666666555554443
No 115
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.92 E-value=1.9e+02 Score=39.09 Aligned_cols=119 Identities=24% Similarity=0.297 Sum_probs=83.9
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHH----hhhhhccccchHHHHHhHHH
Q 000211 1175 SDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEE----SSRLASEGNTSKETLQSLRD 1250 (1852)
Q Consensus 1175 ~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee----~aq~a~e~~~Lk~~L~Sl~e 1250 (1852)
.-.||++|.-++.+|.+.+-...-.-..|.+|+..++.+.++|....-.++|+-.+ ..|+-.+..++|-.+.
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~---- 504 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE---- 504 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----
Confidence 45678888888888888888888888889999999999999999998888887633 3444445555544433
Q ss_pred HHHHhhhhHHHhhHHHHHhhhhhh--hhhhhh--hcccccchHHHHHHHHHhhhHhhhhhh
Q 000211 1251 ELQSERSLRDELKNVVTDLTSQLN--EKHCQL--LDLDQQKSELVQLKLLVLDLESEKSRA 1307 (1852)
Q Consensus 1251 EL~~ersLreeLE~tV~~L~skLd--Ek~~qL--~~fd~~~~EL~~Lk~qv~DLese~S~~ 1307 (1852)
++=..|..++.+|. ||+-++ +.+-+...|+.||+.+.-.|-.-.++.
T Consensus 505 ----------eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 505 ----------EALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred ----------HHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443 344455 445777888999998888887666644
No 116
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=75.61 E-value=1.9e+02 Score=34.71 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 000211 1038 SKQTISELTEENRALMVALQDKSEESVKLALEV 1070 (1852)
Q Consensus 1038 tK~~~~el~~En~al~~slqdK~ees~~~~~El 1070 (1852)
.+.....|++-|+.|+.+|||-..-+..-|+++
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~l 43 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTALKVRKL 43 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHH
Confidence 344455666666666666666666666655554
No 117
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.82 E-value=91 Score=33.01 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--hHHHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE-NQRH--MLGELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ-~q~q--~~~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1852)
..++.+|..+...++.|......+...|..++..+....+..|. .+++ ....|..++.+++..=..|..|++..++.
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444444444444443332 1111 11447778888888888888888888888
Q ss_pred HHHHHHHHHHHhhhHhHHHhhhHHHHHh
Q 000211 536 RLDVDEQVLRFSEERRDLESLNKELERR 563 (1852)
Q Consensus 536 eeel~~Q~~rF~edl~al~~~kvEqEqR 563 (1852)
...+...-..+.+-...+.....+.++|
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQR 113 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8887766666666666665555555554
No 118
>PRK09039 hypothetical protein; Validated
Probab=74.49 E-value=1.3e+02 Score=36.59 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhh
Q 000211 1335 LIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFH 1414 (1852)
Q Consensus 1335 iiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~n 1414 (1852)
+||-=.|| -|.+|++--++-+.++..+.-+ |-..+.- ...+++.|...|..|++.+.++-+.+-.|-.
T Consensus 35 ~~f~~~q~-----fLs~~i~~~~~eL~~L~~qIa~----L~e~L~l---e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 35 TVFVVAQF-----FLSREISGKDSALDRLNSQIAE----LADLLSL---ERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHH----HHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 4666666666666666666444 2222222 2345677888888888888877776666666
Q ss_pred chhhh-------hhchhhhhhhhHHhhhhhhhhh---hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 000211 1415 ENNSL-------IAQSEEYKSRAETMADNYGEHK---SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLA 1484 (1852)
Q Consensus 1415 and~~-------~AElEE~Kqr~E~~l~~~~Eek---sk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~ 1484 (1852)
.|... .+.+.....++.+....|.+.. ..+.-+|+.||.=|...+.+|+...-...+...+.--|+.+|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 103 LLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 2222234444444444454442 2334455555555555555555544444444444444444443
Q ss_pred hh
Q 000211 1485 EQ 1486 (1852)
Q Consensus 1485 e~ 1486 (1852)
..
T Consensus 183 ~a 184 (343)
T PRK09039 183 VA 184 (343)
T ss_pred HH
Confidence 33
No 119
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.29 E-value=30 Score=40.98 Aligned_cols=129 Identities=23% Similarity=0.292 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHh-------hhccHHHHhhhhhhh
Q 000211 1397 TLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQL-------LVGSEEEIDDLMMSR 1469 (1852)
Q Consensus 1397 eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~L-------L~~~eeeid~l~~~k 1469 (1852)
+|+++|+..-..||.|...|..|+.|++-.|-+.+..-...----+++..++.+.+.. +..+|--=|+|--.|
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 3566666666779999999999999999888888775444333337777777666554 444444556776666
Q ss_pred hhHHHHHHHHHHHHHhhhHHHhccccchhH-------HHHHHHHhHHHHHHHHHHHhhhhhhc
Q 000211 1470 EELEIKVVVLKAKLAEQHAQVISSEGYIDE-------QKMLQNQCNELRRKLSEQILKTEEFR 1525 (1852)
Q Consensus 1470 ~e~ei~~~vlk~kl~e~~~~i~~~~~~~~e-------l~~l~~~~~eltqklseqilkteefk 1525 (1852)
-.-++...-+..+|+.--..+..|+.-.|| ...||....+|+|-||=+.-.||-=|
T Consensus 129 Rati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E~pR 191 (333)
T KOG1853|consen 129 RATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPR 191 (333)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 666666666777777666666666555544 55788888889999988776666544
No 120
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.29 E-value=51 Score=34.85 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred HHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHH---HHHhhhccHHHHhhhhhh
Q 000211 1392 LTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVER---MKQLLVGSEEEIDDLMMS 1468 (1852)
Q Consensus 1392 ~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~---lK~LL~~~eeeid~l~~~ 1468 (1852)
...|.++++++.............-..++.+++.........-..|-.+--+|+-.+.. +|.=+..+..+|..|.-.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE 81 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888777777777777777888877777777778888888888776554 444455555555555555
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHH
Q 000211 1469 REELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELR 1511 (1852)
Q Consensus 1469 k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~elt 1511 (1852)
.+-+...+-..++...+++. .+-.|+..++.+|.||.
T Consensus 82 ~~~a~~~l~~~e~sw~~qk~------~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 82 AESAKAELEESEASWEEQKE------QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 55555544444444444433 34567777777777775
No 121
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.90 E-value=4e+02 Score=37.28 Aligned_cols=126 Identities=22% Similarity=0.141 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 000211 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAR-EAQCNEENARLLTSLDTLRSELDSAIAEN 1409 (1852)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lks-Ea~~~keNaeL~~~I~eLesELeasiaek 1409 (1852)
+.-++.=.-.+|...|+|+.+|+--+ ...+++-+|.+..+++.++. .+..-.|=+.|...|...+..++++-.+-
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~----~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEK----ERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555567788888888887544 45667777777666665542 33333444555556666665555555544
Q ss_pred HhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHH
Q 000211 1410 RVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVV 1478 (1852)
Q Consensus 1410 R~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~v 1478 (1852)
-...+.|..+..|.|+. ..|+...|..|++.+.+|+.|...=.+++.++.-
T Consensus 811 ek~~~e~e~l~lE~e~l------------------~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEEL------------------EKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444454444444443 3444455555555555555554444444444433
No 122
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=72.13 E-value=2e+02 Score=33.42 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhH-HHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchh
Q 000211 1339 RTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQ-CNEENARLLTSLDTLRSELDSAIAENRVLFHENN 1417 (1852)
Q Consensus 1339 KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~-~~keNaeL~~~I~eLesELeasiaekR~L~nand 1417 (1852)
-..|..+|....+.....+.|.++-+-+--.-++.+..-...|+. +--......+++.+|+..|+.=..+|-+|+.=-|
T Consensus 120 ~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICD 199 (207)
T PF05010_consen 120 IEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICD 199 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888889999887666655555555555555543 3334556688999999999999999999999888
Q ss_pred hhhhchh
Q 000211 1418 SLIAQSE 1424 (1852)
Q Consensus 1418 ~~~AElE 1424 (1852)
.+.+.++
T Consensus 200 eLI~k~~ 206 (207)
T PF05010_consen 200 ELISKMG 206 (207)
T ss_pred HHHHHhc
Confidence 8877654
No 123
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.81 E-value=3.8e+02 Score=36.54 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=33.7
Q ss_pred HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHH
Q 000211 1152 VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEK 1192 (1852)
Q Consensus 1152 ~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~ 1192 (1852)
.+.+++...+..|..+|+..+..+.++-.++.+++..|...
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 45677888899999999999988888888888888777654
No 124
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.85 E-value=1.5e+02 Score=39.90 Aligned_cols=209 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhc
Q 000211 1343 EAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQ 1422 (1852)
Q Consensus 1343 EtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AE 1422 (1852)
.++++|+.-|-.--.+..--+--|+.-..-+|.. +...-.+|.-+|--++..+.-+-.+--.+...-|.|++|
T Consensus 415 rar~qem~~Qk~reqe~iv~~nak~~ql~~elet-------Ln~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 415 RARRQEMLNQKNREQEWIVYLNAKKKQLQQELET-------LNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHH
Q ss_pred hhhhhhhh---HHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhH
Q 000211 1423 SEEYKSRA---ETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDE 1499 (1852)
Q Consensus 1423 lEE~Kqr~---E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~e 1499 (1852)
+.+.++++ .+.++...-||-.+-.-+-++-.-...---....|---...-|.-+--||++|+++.+++-+ .+.|
T Consensus 488 i~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es---k~~e 564 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES---KLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhh-----hhcchh---hhhHHhhhhhhHHHHhhhhhcccCCCcchhhhhhH
Q 000211 1500 QKMLQNQCNELRRKLSEQILKTE-----EFRNLS---IHLKELKDKADAECLKLHEKRESEGLPTGMQESLR 1563 (1852)
Q Consensus 1500 l~~l~~~~~eltqklseqilkte-----efknls---ihlkelkdkaeaec~~~~ek~e~eg~~~amqeslr 1563 (1852)
+..+.+|.++|.--+.-|+|+-+ ||.-|- -|..||+-+-++ -.++-.+-+.|.|-+.+|..+
T Consensus 565 idi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ke~--e~~~asa~~~~~~~~~~et~~ 634 (1118)
T KOG1029|consen 565 IDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGEKEA--ESAPASAADAGAPAPWPETTN 634 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--ccchhhcccCCCCcccccccc
No 125
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=70.32 E-value=15 Score=36.80 Aligned_cols=107 Identities=13% Similarity=0.198 Sum_probs=58.2
Q ss_pred eeecccccccccc---eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh--hcCCC
Q 000211 22 FHATHIQQTGWDK---LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV--AMGSS 96 (1852)
Q Consensus 22 FhAtqVp~~gwd~---L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV--s~GSs 96 (1852)
+.|..+|...+.. -||.|.....++.+.||. ..-.+-+..|..++.=.+.. +. .....|.| .....
T Consensus 8 ~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~-~~~~t~~P~Wne~f~f~i~~---~~-----~~~L~i~v~d~d~~~ 78 (126)
T cd04043 8 VRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTR-TIYDTLNPRWDEEFELEVPA---GE-----PLWISATVWDRSFVG 78 (126)
T ss_pred EEeECCCCCCCCCCCCceEEEEECCCCeeeeccc-EecCCCCCcccceEEEEcCC---CC-----CCEEEEEEEECCCCC
Confidence 5677777554432 356665333334444443 22234455565554322211 11 11222333 12334
Q ss_pred cccccceeecchhhcccc--cCCeeeeecCCCCCCCCeEEEEEeee
Q 000211 97 RSSILGEATINLADYADA--SKPSTVLLPLHGGDSGTILHVTVQLL 140 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a--~kp~~VSLPLk~cnsGtvLHVtIQ~l 140 (1852)
+..++|+++|++++..-. ..+..+.+||.. .|.+ |+.|..-
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i-~l~~~~~ 121 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRL-LLRVSME 121 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeE-EEEEEEe
Confidence 789999999999986432 446678999976 4665 8776654
No 126
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.07 E-value=2.1e+02 Score=32.96 Aligned_cols=216 Identities=17% Similarity=0.224 Sum_probs=110.0
Q ss_pred HHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhh
Q 000211 1065 KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKS 1144 (1852)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~s 1144 (1852)
.+-.+++....-+..+...+.....-....+..+..|.-.+.-....|............++..-...+.. .
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de----~---- 76 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE----S---- 76 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH----H----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----H----
Confidence 34456666777777777777777777777777777776666655555544333333332221111111111 0
Q ss_pred HHHHHHH-HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHH
Q 000211 1145 EEAAKLA-VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVS 1223 (1852)
Q Consensus 1145 Ee~~k~A-~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~ 1223 (1852)
+..++-. .........|..|..+|.......+....++.++..-|...-......-.......+.+..|..+-..+-..
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 0011111 112235667777777777777777777777777776666655544444444444444444442222222111
Q ss_pred HhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhh
Q 000211 1224 LQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESE 1303 (1852)
Q Consensus 1224 L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese 1303 (1852)
|.+++---..--.-.+.++.++..|+.+|.+-.+..... ...+..|..++.+|+-+
T Consensus 157 ---------------------lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~a---E~~v~~Le~~id~le~e 212 (237)
T PF00261_consen 157 ---------------------LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFA---ERRVKKLEKEIDRLEDE 212 (237)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 222221111111222466666667777776665555322 34456666666666666
Q ss_pred hhhhhhhcc
Q 000211 1304 KSRASEESS 1312 (1852)
Q Consensus 1304 ~S~~~~kts 1312 (1852)
+.....+..
T Consensus 213 L~~~k~~~~ 221 (237)
T PF00261_consen 213 LEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665443333
No 127
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=69.77 E-value=4.8e+02 Score=36.94 Aligned_cols=362 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhc--cccc
Q 000211 1097 AVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHG--ERSL 1174 (1852)
Q Consensus 1097 ~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~--~~~~ 1174 (1852)
+-.++-.+|+.....=..-+..-.+.++...+-+.+.+..-.+...+...+...--....++..++.+.+.... ....
T Consensus 24 ~~~~iq~~l~~~~~~~~~~~k~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s 103 (1109)
T PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMS 103 (1109)
T ss_pred CHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCC
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHH-hhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHH
Q 000211 1175 SDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAEL-TSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQ 1253 (1852)
Q Consensus 1175 ~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L-~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~ 1253 (1852)
...|........+.|..-+.+..++-..-++....+..+ +.. .+....+++.+.. |.+.-.+-.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~-~~~~~~l~~i~~~--------------L~~~~~~~~ 168 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ-TEARRQLNEIERR--------------LQTLGTPNT 168 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH-HHHHHHHHHHHHH--------------HhCCCCCCC
Q ss_pred HhhhhHH-HhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhh
Q 000211 1254 SERSLRD-ELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVD 1332 (1852)
Q Consensus 1254 ~ersLre-eLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~d 1332 (1852)
.+...+. .++-...-++.+++..+..+ .+.+.+..|-..--|+....-.+.
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l----~s~~~~~~L~~~q~dl~~~~~~~l------------------------ 220 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQ----LSANNRQELARLRSELAKKRSQQL------------------------ 220 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHH------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHH-HHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHh
Q 000211 1333 VRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVE-TVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRV 1411 (1852)
Q Consensus 1333 vriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDae-deln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~ 1411 (1852)
+..++.|+.+++.-+....|..-+-.... +.....-.+=...++.|.+|...|...--.++....+++.
T Consensus 221 ----------~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~ 290 (1109)
T PRK10929 221 ----------DAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQ 290 (1109)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhchhhhhhchh--------------------hhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhh-----
Q 000211 1412 LFHENNSLIAQSE--------------------EYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLM----- 1466 (1852)
Q Consensus 1412 L~nand~~~AElE--------------------E~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~----- 1466 (1852)
.-+.++.+..-.- ..++++-..-.- .++..+++.++-=.+.++++.|++.
T Consensus 291 ~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~-----~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~ 365 (1109)
T PRK10929 291 AASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKP-----QQLDTEMAQLRVQRLRYEDLLNKQPQLRQI 365 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCccc-----chhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred -------hhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHH
Q 000211 1467 -------MSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSE 1516 (1852)
Q Consensus 1467 -------~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqklse 1516 (1852)
++.++..+..-+|+.+-+=+..-+.++..+..|+.+|+--.+.|++.+.+
T Consensus 366 ~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~ 422 (1109)
T PRK10929 366 RQADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKE 422 (1109)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 128
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=68.52 E-value=4.4 Score=40.33 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=37.4
Q ss_pred hhhh-hcCCCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEEeee
Q 000211 88 KFVV-AMGSSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQLL 140 (1852)
Q Consensus 88 kfVV-s~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~l 140 (1852)
.|.| .-+..+..++|.+.|+|++......-..-.+||.+...|+| |+++|..
T Consensus 57 ~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i-~~~~~~~ 109 (111)
T cd04052 57 TVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRI-RISALWK 109 (111)
T ss_pred EEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEE-EEEEEEe
Confidence 3444 33434789999999999999765444567889988655554 9988864
No 129
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.39 E-value=25 Score=34.23 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=45.3
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
+..|.-|+.-+..+.|+..+...++-+|++.=--=.++-++.-.++..||.|-++|+.|++..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578889999999999999999888888875443344455566666666666666666655443
No 130
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=67.51 E-value=5.7 Score=40.13 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=58.7
Q ss_pred eecccccccc---cceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh-hc-CCCc
Q 000211 23 HATHIQQTGW---DKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-GSSR 97 (1852)
Q Consensus 23 hAtqVp~~gw---d~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-GSsk 97 (1852)
.|..+|..+. ---||.|- .|+...||. ..-.+-+..|...++=.+ .+..++...+....|.| .- ..++
T Consensus 7 ~A~~L~~~d~~g~~dpYv~v~---l~~~~~kT~-v~~~t~nP~Wne~f~F~v---~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 7 QARGLLCKGKSGTNDAYVIIQ---LGKEKYSTS-VKEKTTSPVWKEECSFEL---PGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred ECcCCcCCCCCcCCCceEEEE---ECCeeeeee-eecCCCCCEeCceEEEEe---cCcccCCCcCCEEEEEEEEccccCC
Confidence 4555554322 22344442 365555433 333344666766532111 11111122333444444 22 2346
Q ss_pred ccccceeecchhhccc-ccCCeeeeecCCCCC-----CCCeEEEEEe
Q 000211 98 SSILGEATINLADYAD-ASKPSTVLLPLHGGD-----SGTILHVTVQ 138 (1852)
Q Consensus 98 sgiLGEasinlAdY~~-a~kp~~VSLPLk~cn-----sGtvLHVtIQ 138 (1852)
..++|.+.|.+++... ...+....+||...+ ..+-|||+||
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 7899999999999763 345677889996432 3467889887
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.98 E-value=4e+02 Score=34.95 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=14.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcc
Q 000211 704 LLEASGEIRLMKERMDELSHQLELS 728 (1852)
Q Consensus 704 ~~~a~~~i~~mker~~~l~~ql~~s 728 (1852)
+......|+.+++.|+.+..+|...
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344556666666666666666553
No 132
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=66.77 E-value=2.1e+02 Score=36.82 Aligned_cols=143 Identities=24% Similarity=0.347 Sum_probs=99.4
Q ss_pred HHHHHHhhhccHHHHHHHHhhh-------hHHHhhhhhhhhHHHHHHHHHHHHH-------H---hccchhHHH------
Q 000211 1008 EVELQQLSSKNRDLAQEILALQ-------VVTEEFDRSKQTISELTEENRALMV-------A---LQDKSEESV------ 1064 (1852)
Q Consensus 1008 e~elq~l~s~n~~l~~~i~~l~-------~v~~E~~~tK~~~~el~~En~al~~-------s---lqdK~ees~------ 1064 (1852)
+..+|.|...|--|..++.+|+ ..+.=++++|..+.+|-+++-.+|. . ||.....+-
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEs 409 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQES 409 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666654 3445578888888888888766653 2 222222222
Q ss_pred -----HHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHH----hhhHhhhh
Q 000211 1065 -----KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTA----VLTKENQD 1135 (1852)
Q Consensus 1065 -----~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~----~dlEea~s 1135 (1852)
-+-.||+.+|+.+-+|+..-.++++.++.-.+.-...-.-|+.|...+.-+.+.+-+|=+... ....++.+
T Consensus 410 r~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~ 489 (527)
T PF15066_consen 410 RNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKET 489 (527)
T ss_pred HhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888899999999999999988888888888899999888777777777733332 23446667
Q ss_pred hHHhhhhhhHHHHHH
Q 000211 1136 LMVSLQNKSEEAAKL 1150 (1852)
Q Consensus 1136 l~~~Lls~sEe~~k~ 1150 (1852)
+..+++++.++..+-
T Consensus 490 ~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 490 REQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888777743
No 133
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=66.22 E-value=9.4 Score=38.57 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=40.1
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCC---CCCCeEEEEEeeeccCCcch
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPLHGG---DSGTILHVTVQLLTSKTGFR 147 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~c---nsGtvLHVtIQ~l~~~t~~r 147 (1852)
.+..++|.+.+++++... .....+.+||... ..++-||+.++...+.++..
T Consensus 70 ~~d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~ 123 (127)
T cd08373 70 GRNRLIGSATVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG 123 (127)
T ss_pred CCCceEEEEEEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence 467899999999999886 4667888999533 34679999999998765543
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.11 E-value=13 Score=40.31 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=61.6
Q ss_pred hhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCchH
Q 000211 305 LEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWE 384 (1852)
Q Consensus 305 Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~e 384 (1852)
+.+....|..|+.++..|......+..+|.+|++.+..+ +|...|..|+.|+..+...++.|++....+...+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-----el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~ 148 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-----ELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE 148 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 444455788888888888888888888888888776654 899999999999999999999999866655554444
Q ss_pred Hhh
Q 000211 385 AVK 387 (1852)
Q Consensus 385 elk 387 (1852)
.+.
T Consensus 149 ~~~ 151 (169)
T PF07106_consen 149 KLE 151 (169)
T ss_pred HHH
Confidence 443
No 135
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.81 E-value=3.3e+02 Score=33.28 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=19.3
Q ss_pred HHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHH
Q 000211 1209 KIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRD 1250 (1852)
Q Consensus 1209 ~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~e 1250 (1852)
.+.+|...-++..-.++++++.+..+-..+..|......+.+
T Consensus 56 ~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e 97 (294)
T COG1340 56 KAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKE 97 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555544444443333333333333
No 136
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.30 E-value=34 Score=38.10 Aligned_cols=122 Identities=20% Similarity=0.333 Sum_probs=38.8
Q ss_pred hhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHh
Q 000211 997 HTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQS 1076 (1852)
Q Consensus 997 ~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s 1076 (1852)
.+++-..+..+..||.++--.+-.+++.|..+..-..+++. .++.+...-..+-.++..|+.-
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~-----------------~~~~~~~~l~~l~~~~~~L~~~ 131 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEK-----------------ELSEKERRLAELEAELAQLEEK 131 (194)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhh-----------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888888888888887766554443332 2222233333333444444444
Q ss_pred hHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhh
Q 000211 1077 FQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQD 1135 (1852)
Q Consensus 1077 ~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~s 1135 (1852)
...+..++.......+.+.-....|--+++.....+..+..+|..|++-.......++.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444556666666666777788885555444444443
No 137
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.94 E-value=3.5e+02 Score=33.23 Aligned_cols=282 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHHHHhhH-----------hhhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 000211 826 NGNLRRETSLLQKELETVKI-----------DFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLE 894 (1852)
Q Consensus 826 ~~~l~~e~~~~~~~~~~~k~-----------~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~ 894 (1852)
|+-|++||+.|.-+++|||. +..-+---|++||..+-.=.+.|-.+...|...++. |-.+.+....+
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~--L~aENt~L~Sk 78 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNV--LKAENTMLNSK 78 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHH--HHHHHHHHhHH
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHH
Q 000211 895 SKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQL 974 (1852)
Q Consensus 895 ~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~ 974 (1852)
-.+=..---+||-=-...|-+.---+.+.+.-.--+--++..+-.+.-+-..++-|.-.|+-++.++-.+=..-|-+-+
T Consensus 79 Le~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskae- 157 (305)
T PF14915_consen 79 LEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAE- 157 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHH-
Q ss_pred HHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHH
Q 000211 975 RFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMV 1054 (1852)
Q Consensus 975 ~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~ 1054 (1852)
|.+.-|+.+|+... .+|..+-+.|.+|-.++..|.--+.|+..
T Consensus 158 ---------------------------sK~nsLe~elh~tr---daLrEKtL~lE~~QrdL~Qtq~q~KE~e~------- 200 (305)
T PF14915_consen 158 ---------------------------SKFNSLEIELHHTR---DALREKTLALESVQRDLSQTQCQIKEIEH------- 200 (305)
T ss_pred ---------------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhh
Q 000211 1055 ALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQ 1134 (1852)
Q Consensus 1055 slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~ 1134 (1852)
-.|+-..-..+...-=+|+.+-|.-++.|+.-+|+-.+|-..++-.----+..-+.+|.+.=...+.=-.+.+..+++.|
T Consensus 201 m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErN 280 (305)
T PF14915_consen 201 MYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERN 280 (305)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred h-hHHhhhhhhHHH
Q 000211 1135 D-LMVSLQNKSEEA 1147 (1852)
Q Consensus 1135 s-l~~~Lls~sEe~ 1147 (1852)
. +|..-+-++|.+
T Consensus 281 KeL~ne~n~LkEr~ 294 (305)
T PF14915_consen 281 KELINECNHLKERL 294 (305)
T ss_pred HHHHHHHHHHHHHH
No 138
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.16 E-value=54 Score=36.13 Aligned_cols=78 Identities=24% Similarity=0.352 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccc-----hhHHHHHHHHhHHHHHHHHHHH
Q 000211 1444 LALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGY-----IDEQKMLQNQCNELRRKLSEQI 1518 (1852)
Q Consensus 1444 ~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~-----~~el~~l~~~~~eltqklseqi 1518 (1852)
-..-+.-+..++...-+.+-.=++||.++|-...-+++.+.+++++|..++++ -.+...|+..+..|.++|-+.|
T Consensus 21 Ae~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 21 AEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666766666666668999999999999999999999999887544 4677889999999999999998
Q ss_pred hhh
Q 000211 1519 LKT 1521 (1852)
Q Consensus 1519 lkt 1521 (1852)
-|.
T Consensus 101 ~~l 103 (177)
T PF07798_consen 101 NKL 103 (177)
T ss_pred HHH
Confidence 754
No 139
>PRK10869 recombination and repair protein; Provisional
Probab=62.23 E-value=2.7e+02 Score=36.07 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=54.8
Q ss_pred HHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhh
Q 000211 1242 KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKS 1305 (1852)
Q Consensus 1242 k~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S 1305 (1852)
-+.|..+++-|..+..|+-.--.++.++....++.+.+|..++.....+..|+.++..+..++.
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~ 358 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQAL 358 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3458888889999999998888899999999999999999999988888888888888777665
No 140
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=62.13 E-value=3.1e+02 Score=33.91 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=97.5
Q ss_pred HHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhh---------hhHHHHHHHHHHHHHHHHHH--HHHhhchhh
Q 000211 1291 VQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLA---------VDVRLIFTRTQYEAWVEELV--QQVYSTDRL 1359 (1852)
Q Consensus 1291 ~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A---------~dvriiF~KeQYEtkvqEL~--~QL~~Skk~ 1359 (1852)
........+|-.+.+.++.|+-.|=.|++-=+++..++-. +.|+ -.|+|--.--+-|. +++..-+-+
T Consensus 48 v~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~--~AkeqVsl~~~sL~~~~~~~~~~~~ 125 (426)
T KOG2008|consen 48 VEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLR--AAKEQVSLAEQSLLEDDKRQFDSAW 125 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcchhhhhHHHH
Confidence 3455667788888888899999888888877777654433 3333 34666555555666 677777778
Q ss_pred HHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhh
Q 000211 1360 LTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGE 1439 (1852)
Q Consensus 1360 ~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~E 1439 (1852)
++-+-.-.|-|-..=..|.+.|.+|+.+-++++.----| -.+++..-+..+-..-|-|
T Consensus 126 ~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~----------------------R~~ek~n~~AIkKSrpYfE 183 (426)
T KOG2008|consen 126 QEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRM----------------------RQLEKKNKRAIKKSRPYFE 183 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHhHHHHhhcchHHH
Confidence 887777778777777889999999998877765322211 1223233344455566777
Q ss_pred hhhhhHHHHHHHHHhhhccH
Q 000211 1440 HKSQLALEVERMKQLLVGSE 1459 (1852)
Q Consensus 1440 eksk~a~Eve~lK~LL~~~e 1459 (1852)
.|.++-+-+++.|.++.-+|
T Consensus 184 ~k~~~t~~le~qk~tv~~Le 203 (426)
T KOG2008|consen 184 LKAKYTVQLEQQKKTVDDLE 203 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877654443
No 141
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=61.86 E-value=13 Score=36.74 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=33.8
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEEee
Q 000211 94 GSSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQL 139 (1852)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~ 139 (1852)
..++..++|.+.+++++... ..+..+.+||..+ .|.+ |+-|..
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~-~G~~-~~~~~~ 114 (116)
T cd08376 72 TGKKDEFIGRCEIDLSALPR-EQTHSLELELEDG-EGSL-LLLLTL 114 (116)
T ss_pred CCCCCCeEEEEEEeHHHCCC-CCceEEEEEccCC-CcEE-EEEEEe
Confidence 34578999999999999876 5678999999987 4665 666544
No 142
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.71 E-value=3.6e+02 Score=32.59 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc
Q 000211 1442 SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE 1494 (1852)
Q Consensus 1442 sk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~ 1494 (1852)
......++.|..+...++...++|..-+.|.+..+.-++++.+..+.++..++
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788999999999999999999999999999999999998877665554
No 143
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.22 E-value=3.6e+02 Score=32.45 Aligned_cols=204 Identities=18% Similarity=0.146 Sum_probs=117.7
Q ss_pred hhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHH
Q 000211 1115 FDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQ 1193 (1852)
Q Consensus 1115 fd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q-~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~ 1193 (1852)
+-..|.+|.+.+.+-....+..+..|+.+++-+.....++.+ ...-++.+..+|+..- ..+
T Consensus 18 L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~e--------------ek~---- 79 (258)
T PF15397_consen 18 LTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWE--------------EKE---- 79 (258)
T ss_pred HHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH--------------HHH----
Confidence 334588888899998899999999999999988877655554 3333444443333211 001
Q ss_pred HhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHH-HhhHHHHHhhhh
Q 000211 1194 QQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRD-ELKNVVTDLTSQ 1272 (1852)
Q Consensus 1194 ~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLre-eLE~tV~~L~sk 1272 (1852)
++-+ +-+.-.+..|.+-+....+||+.+..-++ +--.+. =+
T Consensus 80 -------------e~~l---------------------~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~----vq 121 (258)
T PF15397_consen 80 -------------ESKL---------------------SKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA----VQ 121 (258)
T ss_pred -------------HhHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH----HH
Confidence 1111 11222334455556666666777776666 111111 01
Q ss_pred hhhhhhhhhcc-cccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000211 1273 LNEKHCQLLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQ 1351 (1852)
Q Consensus 1273 LdEk~~qL~~f-d~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~ 1351 (1852)
.-+...+|-++ |.+.+||..|..++...-..+++.+-+ -++.+ ++-+-.|+
T Consensus 122 Ia~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~-------------k~~~i----l~~~~~k~----------- 173 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQE-------------KKEEI----LSSAAEKT----------- 173 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH----HHHHHHHH-----------
Confidence 22233333333 667777777777766554444433211 11111 11111111
Q ss_pred HHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 000211 1352 QVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELD 1403 (1852)
Q Consensus 1352 QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELe 1403 (1852)
++.....+-.+.+.++.+..++..++....+.-+++..|...+..|..+.+
T Consensus 174 -~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 174 -QSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred -HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122334455666888888999999999999999999999999999888765
No 144
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=60.15 E-value=14 Score=36.45 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=33.6
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEEe
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQ 138 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ 138 (1852)
+..++|.+.|++++.... .....-+||..+.+|-| |+.+|
T Consensus 81 ~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~~-~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKK-GFIDEWLPLEDVKSGRL-HLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhccc-CccceEEECcCCCCceE-EEEEe
Confidence 788999999999998864 45678899999877776 88776
No 145
>PRK11281 hypothetical protein; Provisional
Probab=59.95 E-value=7.1e+02 Score=35.43 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=40.5
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhhhhhhHH---------HHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhH
Q 000211 1178 LKSRAIDISSQLNEKQQQLIDFDQQNSEM---------IQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSL 1248 (1852)
Q Consensus 1178 LQsk~~Dves~Ln~~~~~e~e~~~enSeL---------~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl 1248 (1852)
++.....+++.+|....++.+-.-..++- +..+..+...|..+.-.|..-+.+.++...+..+-+..|+.+
T Consensus 239 ~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~ 318 (1113)
T PRK11281 239 LEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRL 318 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666555555443333221 111233456688888888777777666666666666666555
Q ss_pred HH
Q 000211 1249 RD 1250 (1852)
Q Consensus 1249 ~e 1250 (1852)
..
T Consensus 319 ~q 320 (1113)
T PRK11281 319 TQ 320 (1113)
T ss_pred HH
Confidence 43
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.83 E-value=82 Score=39.99 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=4.9
Q ss_pred hccHHHHhhhhh
Q 000211 1456 VGSEEEIDDLMM 1467 (1852)
Q Consensus 1456 ~~~eeeid~l~~ 1467 (1852)
+.++||+-||++
T Consensus 438 ~dLqEQlrDlmf 449 (493)
T KOG0804|consen 438 TDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHhHhe
Confidence 333444444443
No 147
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.80 E-value=6.8e+02 Score=35.18 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=76.5
Q ss_pred HhhhhhHHhhhhhhHHHHHHHHHHHh--HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHH
Q 000211 1131 KENQDLMVSLQNKSEEAAKLAVELDS--VRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQ 1208 (1852)
Q Consensus 1131 Eea~sl~~~Lls~sEe~~k~A~t~~q--~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~ 1208 (1852)
+...+++.+++.+++++.+....++- -+..++++.-.++....+.+.-- +..--.+-|.....+=++.-.....++.
T Consensus 695 ~~ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i-~~~~~~~~~~~s~~~~iea~~~i~~~e~ 773 (1072)
T KOG0979|consen 695 ERIENLVVDLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGI-KEKNESSYMARSNKNNIEAERKIEKLED 773 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567788888888866544333 33445555555555554444211 1112233344444444444555566677
Q ss_pred HHHHHhhhHHHHHHHHhHhHHHhhhhh--ccccchHHHHHhHHH-----------HHHHhhhhHHHhhHHHHH
Q 000211 1209 KIAELTSENQALMVSLQEYAEESSRLA--SEGNTSKETLQSLRD-----------ELQSERSLRDELKNVVTD 1268 (1852)
Q Consensus 1209 ~~~~L~~en~a~mv~L~d~kee~aq~a--~e~~~Lk~~L~Sl~e-----------EL~~ersLreeLE~tV~~ 1268 (1852)
-+..+......+...+++.+.+-++.. +.+..++....|.++ ++.++-.+.++++..+++
T Consensus 774 ~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~ 846 (1072)
T KOG0979|consen 774 NISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITD 846 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 777788888888899998886655555 445555555544433 344444444555555443
No 148
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.53 E-value=37 Score=38.80 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=52.1
Q ss_pred hhhhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHH---HHHHHHHHhh-chhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000211 299 NRLRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQN---FAQKLAAEIA-SGEQLAEEVSALKSECSHLKSDLERLIK 373 (1852)
Q Consensus 299 n~~Re~Le~AEdsIEkLKsE~~sL~Rqad~selELQt---LRKQivKEsk-rgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1852)
...|.++...+..+.+|++++.......+..-.++|. -+++.+.+.+ .-+.|..|+..++.|.+.|+.+.+.++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999887776655555554 2334444444 3566777777777777777777776664
No 149
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.28 E-value=5.1e+02 Score=33.55 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhcc
Q 000211 1383 QCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGS 1458 (1852)
Q Consensus 1383 ~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~ 1458 (1852)
.|+-|..++-.+|--.+.++.....|-|+|-..-+++.+.| +|.=|+..++-=...+|-+=|-+.-.+|+..
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L----~Rsfavtdellf~sakhddhvR~aykllt~i 457 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL----NRSFAVTDELLFMSAKHDDHVRLAYKLLTRI 457 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 58889999999999999999999999999988777666555 5666677777766677777777887887754
No 150
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.24 E-value=1.1e+02 Score=35.31 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000211 1285 QQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELV 1350 (1852)
Q Consensus 1285 ~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~ 1350 (1852)
+..+|+..||.|..|.--+.+ -|.++|-+|..+|++....+.+.+-++......+.++=.||.
T Consensus 7 qk~GEIsLLKqQLke~q~E~~---~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE 69 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVN---QKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELE 69 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHH
Confidence 346788999999888766554 478888899999999999999998888888888877766554
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.93 E-value=2.6e+02 Score=30.00 Aligned_cols=108 Identities=20% Similarity=0.374 Sum_probs=70.3
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1852)
.....+=+=|.+|..-.+....-+|.|..++-.+..+.+-|....+..+ ..+..++.|....-.....++.++.++
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~----~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLK----EQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678889999999999999999999888888888777654422 234445555554444555555555555
Q ss_pred HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHH
Q 000211 536 RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRA 574 (1852)
Q Consensus 536 eeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKt 574 (1852)
...++.+ .+++.+.+.=..+++.+.+--+||-
T Consensus 107 ~~~~k~~-------kee~~klk~~~~~~~tq~~~e~rkk 138 (151)
T PF11559_consen 107 EAKLKQE-------KEELQKLKNQLQQRKTQYEHELRKK 138 (151)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443 3456666666666666666666654
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.87 E-value=4.7e+02 Score=34.67 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhHHHHHhHHHhhhhh
Q 000211 461 VGGKIFELLRELDESKAERESLAKKMDQMECYY-------------------EALIQELEENQRHMLGELQNLRNEHSSC 521 (1852)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldY-------------------E~LkQeLEQ~q~q~~~ElqnLr~EhS~~ 521 (1852)
..+++.+|...+...+.++...+-+.+++...- ...++.|.+...+...++..|...+..-
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~ 314 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLAN 314 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 347788888888888888887777766665332 2445666665555556667788888888
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHh
Q 000211 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERR 551 (1852)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~edl~ 551 (1852)
-..|..+++|++.++..+..++.++...+.
T Consensus 315 hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~ 344 (754)
T TIGR01005 315 HPRVVAAKSSLADLDAQIRSELQKITKSLL 344 (754)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998877653
No 153
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.19 E-value=4e+02 Score=31.72 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhh
Q 000211 1442 SQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQ 1486 (1852)
Q Consensus 1442 sk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~ 1486 (1852)
+.+-.|+..+|.=.++++.++.+|.--..+++=....|+.++..+
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444444333333333333333
No 154
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=57.13 E-value=4.1e+02 Score=32.17 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=35.4
Q ss_pred hchhhHHHHHHhhHHHHhhHHHHHHHHHhhhh--------cCCCCc----hHHhhhhhcccCCCcccccccchhhh
Q 000211 345 ASGEQLAEEVSALKSECSHLKSDLERLIKLRS--------CHPFTS----WEAVKQGTEITMSTPNLVTCDRSKVN 408 (1852)
Q Consensus 345 krgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk--------~~~~a~----~eelkqel~~t~s~~eli~~E~~~vq 408 (1852)
+|-.-|.+-+.--..|---++.-+--||+.++ .+-++. +..||-++..|.-.++..++|+++++
T Consensus 129 RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 129 RRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 34444555555445555555556666665554 122222 26677777766666666677776554
No 155
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.05 E-value=76 Score=40.85 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchh
Q 000211 1338 TRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENN 1417 (1852)
Q Consensus 1338 ~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand 1417 (1852)
|+..|..+|.+|..|+...+-- =+.+..+...|..++...+.++++...+.+..-.++.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSK---------------------a~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~ 472 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSK---------------------AVHFYAECRALQKRLESAEKEKESLEEELKEANQNIS 472 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765421 1345667778888888888888888888888888888
Q ss_pred hhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhh
Q 000211 1418 SLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMS 1468 (1852)
Q Consensus 1418 ~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~ 1468 (1852)
.+.-||+.-+.+-|.-+... ..-|..|-.=|..-.++||.|.++
T Consensus 473 ~LqDEL~TTr~NYE~QLs~M-------SEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMM-------SEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888776665544444444 444667777777778888877643
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.67 E-value=2.3e+02 Score=32.40 Aligned_cols=56 Identities=30% Similarity=0.310 Sum_probs=35.9
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhh-----HHHhhhhhhhhHHHHHHHHHHHHHHhcc
Q 000211 1003 DLDYLEVELQQLSSKNRDLAQEILALQV-----VTEEFDRSKQTISELTEENRALMVALQD 1058 (1852)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~-----v~~E~~~tK~~~~el~~En~al~~slqd 1058 (1852)
+|..+...++.+...|..|..+|.++-. ........+.-+.++......+...++.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~ 81 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIER 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887665 3344444444455554444444444433
No 157
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=56.37 E-value=19 Score=35.68 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=45.5
Q ss_pred ccCCcccCCcccchhhhhccccchhcchhhhhhhhhhcCCCcccccceeecchhhcccccCCeeeeecCC--CCCCCCeE
Q 000211 56 VRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATINLADYADASKPSTVLLPLH--GGDSGTIL 133 (1852)
Q Consensus 56 Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk--~cnsGtvL 133 (1852)
-.+-++.|...++=.+. +.+..+.=.+|. ..+..+..++|.+.+++++.........+..||. +-+. ..|
T Consensus 45 ~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d---~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~-G~i 116 (124)
T cd04044 45 KDTSNPVWNETKYILVN----SLTEPLNLTVYD---FNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV-GEL 116 (124)
T ss_pred cCCCCCcceEEEEEEeC----CCCCEEEEEEEe---cCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc-eEE
Confidence 34557888877644332 211111111111 1234477999999999999998655444666653 2223 466
Q ss_pred EEEEeee
Q 000211 134 HVTVQLL 140 (1852)
Q Consensus 134 HVtIQ~l 140 (1852)
||.++.+
T Consensus 117 ~~~l~~~ 123 (124)
T cd04044 117 NYDLRFF 123 (124)
T ss_pred EEEEEeC
Confidence 9998875
No 158
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.08 E-value=89 Score=39.12 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=52.3
Q ss_pred chhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCchHHhh
Q 000211 308 AESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWEAVK 387 (1852)
Q Consensus 308 AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~eelk 387 (1852)
....+..++.|+..+......+..+++.|+-++-.+.. -=..+|.+||....+==|++.-+-. .+-+++.+||
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~------~~~~~LqEEr~R~erLEeqlNd~~e-lHq~Ei~~LK 282 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQ------FILEALQEERYRYERLEEQLNDLTE-LHQNEIYNLK 282 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34467777777777777777777788877777666553 3345677888777664455554444 4555667778
Q ss_pred hhhccc
Q 000211 388 QGTEIT 393 (1852)
Q Consensus 388 qel~~t 393 (1852)
|++..+
T Consensus 283 qeLa~~ 288 (395)
T PF10267_consen 283 QELASM 288 (395)
T ss_pred HHHHhH
Confidence 877544
No 159
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.87 E-value=3.4e+02 Score=30.57 Aligned_cols=96 Identities=27% Similarity=0.339 Sum_probs=50.2
Q ss_pred HHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhH--------HhhhhhhhhhhhhHHHHHHHHHhhhccHHHH
Q 000211 1391 LLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAE--------TMADNYGEHKSQLALEVERMKQLLVGSEEEI 1462 (1852)
Q Consensus 1391 L~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E--------~~l~~~~Eeksk~a~Eve~lK~LL~~~eeei 1462 (1852)
+...|..++..+..+++..+.+-..|+....+.+..-.+.. .....+-.++..+...++.++..+......+
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~ 114 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQV 114 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444433333 3344455555556666666666666666666
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhh
Q 000211 1463 DDLMMSREELEIKVVVLKAKLAEQ 1486 (1852)
Q Consensus 1463 d~l~~~k~e~ei~~~vlk~kl~e~ 1486 (1852)
+.|.-+-.+++-+.--++.|.+.+
T Consensus 115 ~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 115 EKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555554444444444
No 160
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=55.13 E-value=20 Score=36.21 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=33.4
Q ss_pred CcccccceeecchhhcccccCC-----eeeeecCC----CCCCCCeEEEEEeee
Q 000211 96 SRSSILGEATINLADYADASKP-----STVLLPLH----GGDSGTILHVTVQLL 140 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp-----~~VSLPLk----~cnsGtvLHVtIQ~l 140 (1852)
++..++|.+.|.+++......+ ....+||. ...++..||+++..|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 4778999999999999876543 23556665 345678899998754
No 161
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=53.66 E-value=15 Score=37.79 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=26.3
Q ss_pred CCCcccccceeecchhhccc-ccCCeeeeecCC
Q 000211 94 GSSRSSILGEATINLADYAD-ASKPSTVLLPLH 125 (1852)
Q Consensus 94 GSsksgiLGEasinlAdY~~-a~kp~~VSLPLk 125 (1852)
+.++..+||++.|.|++.-- ...++++.|||+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 35588899999999998843 357899999986
No 162
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.31 E-value=2.1e+02 Score=31.38 Aligned_cols=74 Identities=20% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhh
Q 000211 1340 TQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLF 1413 (1852)
Q Consensus 1340 eQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~ 1413 (1852)
.+....+.++.+++....+.+.+++.+..+....+......-....+.......++.+++........+-|++.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555888888888888888888888888888888888777777777788888888888888888887777777
No 163
>PRK10869 recombination and repair protein; Provisional
Probab=53.01 E-value=6.4e+02 Score=32.83 Aligned_cols=70 Identities=23% Similarity=0.296 Sum_probs=48.1
Q ss_pred HhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhh
Q 000211 952 EHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILAL 1028 (1852)
Q Consensus 952 e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l 1028 (1852)
..+++...+.+++.++-++.++.++..| .-..-||-..-.+++...+.++.+|+.+..-..++..--..+
T Consensus 281 ~~~l~~~~~~~~~dp~~l~~ie~Rl~~l-------~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~ 350 (553)
T PRK10869 281 SDELRHYLDRLDLDPNRLAELEQRLSKQ-------ISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAV 350 (553)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4566777778899998887777665544 445667777777788888888888888776555444333333
No 164
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.06 E-value=7.1e+02 Score=33.07 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhh
Q 000211 1043 SELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLS 1106 (1852)
Q Consensus 1043 ~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~ 1106 (1852)
..|.+|-+.|-.+..++..++.+...+|..++...+.+-.|++.--.+...|...+..+.-..+
T Consensus 422 ~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 422 APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4677888888888888888888888888888888888777777766666666666665554433
No 165
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.84 E-value=30 Score=31.30 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHH
Q 000211 488 QMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVD 540 (1852)
Q Consensus 488 QL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~ 540 (1852)
||+.||++||..-+. |..++-+=+--...|.++|..|...|.
T Consensus 2 QlE~Dy~~LK~~yd~-----------Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDS-----------LKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhc
No 166
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.42 E-value=3.7e+02 Score=32.74 Aligned_cols=140 Identities=23% Similarity=0.242 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-HH----HhhhhhhhhHHhHHHHHHHH---H
Q 000211 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQN-LR----NEHSSCLYTVSSAKAEIEAM---R 536 (1852)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~Elqn-Lr----~EhS~~l~tIs~Leaqve~L---e 536 (1852)
|.-|-+++|-++-+|+-|.--.+-|++-|+.++-+||= +--.++ +- .|-++-..-|.+.+-|-..| .
T Consensus 32 iriL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eL-----laa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~ 106 (389)
T KOG4687|consen 32 IRILGQDLEKFENEKDGLAARAETLELNLEALERELEL-----LAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDR 106 (389)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH-----HHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHH
Confidence 67789999999999999999999999999999987543 111111 11 12233333344333332222 3
Q ss_pred HHHHHHHHHHhhhHhHH--HhhhHHHHHhhhhH------HH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 000211 537 LDVDEQVLRFSEERRDL--ESLNKELERRAVSA------EA--ALKRARLNYSIAVNQLQKDLELLSSQVLSMYQTNENL 606 (1852)
Q Consensus 537 eel~~Q~~rF~edl~al--~~~kvEqEqRAI~A------Ee--ALRKtRwnnA~aaerLQeef~~LS~Qm~S~fe~NEkl 606 (1852)
+.|-+|.-.+..|-..+ |-+..|-|.-|... |+ --||-|-|.--+-|.||....-|.|-.-+|.+.-|-|
T Consensus 107 eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak~a~LafDLkamideKEEL 186 (389)
T KOG4687|consen 107 EALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEEL 186 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHH
Confidence 44445555555555333 22333334444333 33 3466778888899999999999999999999999999
Q ss_pred HHH
Q 000211 607 IKQ 609 (1852)
Q Consensus 607 ~~q 609 (1852)
+|.
T Consensus 187 imE 189 (389)
T KOG4687|consen 187 IME 189 (389)
T ss_pred HHH
Confidence 984
No 167
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.97 E-value=5e+02 Score=30.99 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=13.7
Q ss_pred HHHHHHhhhhHHHhhHHHHHhhhhhhhh
Q 000211 1249 RDELQSERSLRDELKNVVTDLTSQLNEK 1276 (1852)
Q Consensus 1249 ~eEL~~ersLreeLE~tV~~L~skLdEk 1276 (1852)
+.++...+--...+..+.+.|+++|+..
T Consensus 148 e~e~~~i~e~~~~~~~~~~~L~~~l~~e 175 (239)
T COG1579 148 EEEVAEIREEGQELSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3333333333444555555566666554
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=50.14 E-value=9.4e+02 Score=33.94 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHh--hhccHHHHHHHhhh--hhhH--HHHHHHHHHHhHHHHHHHHHHHHHh---
Q 000211 1338 TRTQYEAWVEELVQQVYSTDRLLTELHT--KNVDVETVLNSCLA--REAQ--CNEENARLLTSLDTLRSELDSAIAE--- 1408 (1852)
Q Consensus 1338 ~KeQYEtkvqEL~~QL~~Skk~~eElq~--K~qDaedeln~~lk--sEa~--~~keNaeL~~~I~eLesELeasiae--- 1408 (1852)
-..||+.+.+.|.-++.-+++-.+++++ -++-...+..+..- .|-. ++++=+++-+-+++|.+.+..-.+.
T Consensus 774 ~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~t~~~~ 853 (1072)
T KOG0979|consen 774 NISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAITDELTRALK 853 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 4578888999999999988888888874 33333333332221 1222 6777777788777765544433331
Q ss_pred ----hHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHH
Q 000211 1409 ----NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQ 1453 (1852)
Q Consensus 1409 ----kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~ 1453 (1852)
++..+..|+...+|+++..++.+.- .++...|..++-.+|+
T Consensus 854 ~~n~ne~~vq~y~~r~~el~~l~~~~~~~----~~~le~i~~kl~~~ke 898 (1072)
T KOG0979|consen 854 FENVNEDAVQQYEVREDELRELETKLEKL----SEDLERIKDKLSDVKE 898 (1072)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHhhHHH
Confidence 3445556666666666555444432 2223334444444444
No 169
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.09 E-value=63 Score=34.47 Aligned_cols=87 Identities=26% Similarity=0.371 Sum_probs=65.6
Q ss_pred hhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh----h
Q 000211 1233 RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA----S 1308 (1852)
Q Consensus 1233 q~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~----~ 1308 (1852)
++.+.+-++...+.++++++..+...|+.+...+..|+...++.+.. ..++..|+.++.+|..+..-. =
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~-------~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL-------KKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777888999999999999999999999999988887543 456677778888887776544 3
Q ss_pred hhcccchhhhHHHHHHHh
Q 000211 1309 EESSSVTSLQSELSEMHE 1326 (1852)
Q Consensus 1309 ~ktsefk~Ls~hL~El~e 1326 (1852)
+|++.+.-|..-+..||+
T Consensus 93 EK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKE 110 (120)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 777877766666655554
No 170
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.80 E-value=7.6e+02 Score=32.78 Aligned_cols=306 Identities=23% Similarity=0.227 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhh
Q 000211 1062 ESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQ 1141 (1852)
Q Consensus 1062 es~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Ll 1141 (1852)
--.-+..|=..||+-|.-+..+.-..|+..+...+++++--|. ++ +--.+-.+.+-++..+=-
T Consensus 37 yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~-------------hk----k~~~~g~e~EesLLqESa 99 (772)
T KOG0999|consen 37 YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ-------------HK----KVARDGEEREESLLQESA 99 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH----HhhccchhhHHHHHHHHH
Confidence 3455667888899999998888888898888888887765443 11 111223333344444433
Q ss_pred hhhHHHHHHH----HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhH
Q 000211 1142 NKSEEAAKLA----VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSEN 1217 (1852)
Q Consensus 1142 s~sEe~~k~A----~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en 1217 (1852)
++.+.+.... -++-|+|.-+.....+......-...+..-+.+++..=....+-.-+|-...++|++---.|..+|
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN 179 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN 179 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444222 344555555555554444444444444444444444444444444444444444444444443333
Q ss_pred HHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHH
Q 000211 1218 QALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLV 1297 (1852)
Q Consensus 1218 ~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv 1297 (1852)
--+--.+ -.-+|..-+-+.||+.+.-+++++.=+.+--+++.+.-..---||.|- |..+.+- +.|-
T Consensus 180 IsLQKqV----s~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEA---LeTlq~E-------Reqk 245 (772)
T KOG0999|consen 180 ISLQKQV----SNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEA---LETLQQE-------REQK 245 (772)
T ss_pred chHHHHH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhH-------HHHH
Confidence 2221111 000333444455555555555555444444444444333333333332 2222111 2233
Q ss_pred hhhHhhhhhh--hhhcccchhhhHHHH--HHHhhhh---------------hhhHHH--------HHHHHHHHHHHHHHH
Q 000211 1298 LDLESEKSRA--SEESSSVTSLQSELS--EMHELLL---------------AVDVRL--------IFTRTQYEAWVEELV 1350 (1852)
Q Consensus 1298 ~DLese~S~~--~~ktsefk~Ls~hL~--El~e~l~---------------A~dvri--------iF~KeQYEtkvqEL~ 1350 (1852)
+-|-.+++-- ..-.+.+.+|..-|. -+.|-+. +.|++. -| -+--.+-++-|.
T Consensus 246 ~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~-sel~iseiqkLk 324 (772)
T KOG0999|consen 246 NALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLF-SELNISEIQKLK 324 (772)
T ss_pred HHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHH-HHHHHHHHHHHH
Confidence 3344444311 112222223333222 1111111 123322 12 223467789999
Q ss_pred HHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Q 000211 1351 QQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLR 1399 (1852)
Q Consensus 1351 ~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLe 1399 (1852)
+||-+--+-..++..-++|.-+.+++-.-.=.....+-.+|...|.-|.
T Consensus 325 qqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~ 373 (772)
T KOG0999|consen 325 QQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALR 373 (772)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885555566777778877777663
No 171
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.29 E-value=2.4e+02 Score=32.69 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=19.8
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhh-hH
Q 000211 522 LYTVSSAKAEIEAMRLDVDEQVLRFSE-ER 550 (1852)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~e-dl 550 (1852)
+..|...+.++.-+=..|-+.+.+|.+ |+
T Consensus 93 i~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 93 IEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445666666677777777777777776 65
No 172
>PRK11546 zraP zinc resistance protein; Provisional
Probab=48.55 E-value=86 Score=34.54 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=72.2
Q ss_pred ccHHHHHHHHhhhhHHHhhhhhhhhHHH----------------HHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhh
Q 000211 1017 KNRDLAQEILALQVVTEEFDRSKQTISE----------------LTEENRALMVALQDKSEESVKLALEVDSFKQSFQSL 1080 (1852)
Q Consensus 1017 ~n~~l~~~i~~l~~v~~E~~~tK~~~~e----------------l~~En~al~~slqdK~ees~~~~~El~slK~s~qSL 1080 (1852)
.|..++=-|++|+.|+. -+-.+++- |+.|.|+.+-+|.|+ ...+...|++.+..-
T Consensus 3 ~~~~~~~~~~ala~~~~---~s~~a~A~~~~G~~~G~~~~~~~~LT~EQQa~~q~I~~~------f~~~t~~LRqqL~aK 73 (143)
T PRK11546 3 RNTKIALVLMALSALAM---GSGSAFAHHHWGGGHGMWQQNAAPLTTEQQAAWQKIHND------FYAQTSALRQQLVSK 73 (143)
T ss_pred cchhHHHHHHHHHHHHH---hhhHHHHhhccCCCCCCCccccccCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 46666666888888875 22233333 899999999999886 456778899999999
Q ss_pred hHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhH
Q 000211 1081 HDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQ 1117 (1852)
Q Consensus 1081 hdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~ 1117 (1852)
+.||.++...-.--.+++..|+.|+..++.+|.+.+-
T Consensus 74 r~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 74 RYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888889888888887765443
No 173
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=48.16 E-value=4.1e+02 Score=30.41 Aligned_cols=138 Identities=24% Similarity=0.337 Sum_probs=94.5
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccc
Q 000211 800 SFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESF 879 (1852)
Q Consensus 800 ~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~ 879 (1852)
.+..-|-..+..+-.+-.- |++++..+.......+..+.+++.=|..|-.-+..++.....|=.
T Consensus 13 ~iK~YYndIT~~NL~lIks----------LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k------ 76 (201)
T PF13851_consen 13 EIKNYYNDITLNNLELIKS----------LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRK------ 76 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------
Confidence 3444477788777666443 456666677777777777777777776665555555544433300
Q ss_pred cccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhh
Q 000211 880 SELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMI 959 (1852)
Q Consensus 880 ~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~ 959 (1852)
.| .+|..--++| .++=.++-.+-++.+.|..|-.+++.++...+.+--.+..+|+.=|+..-
T Consensus 77 ------------~L--~~y~kdK~~L----~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 77 ------------QL--KNYEKDKQSL----QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred ------------HH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111122 23445666778888999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHH
Q 000211 960 DKQSVSNALLQK 971 (1852)
Q Consensus 960 ~kl~~s~~l~qk 971 (1852)
+|.++-|-+|++
T Consensus 139 Qk~~~kn~lLEk 150 (201)
T PF13851_consen 139 QKTGLKNLLLEK 150 (201)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 174
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=47.62 E-value=5.1e+02 Score=30.09 Aligned_cols=232 Identities=20% Similarity=0.246 Sum_probs=124.0
Q ss_pred HHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhh-------------HHHHHHHHHhhHhhhhhhhhhhhHHH
Q 000211 793 SLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRET-------------SLLQKELETVKIDFDELASVNKNLQR 859 (1852)
Q Consensus 793 ~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~-------------~~~~~~~~~~k~~~~~~~s~~~~lq~ 859 (1852)
.+..-...+...|..|...-.+....|..|.-+...+|... ..++.++..++.-+..-...+..+..
T Consensus 26 ~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~ 105 (296)
T PF13949_consen 26 KLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRS 105 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444445566666777777777777777776665555553 57888888888888887777777777
Q ss_pred HHHHHHHHHHHhhhhccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhH
Q 000211 860 TINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNACQKIRQLMQEKKALIDE-------KDR 932 (1852)
Q Consensus 860 ~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e-------~d~ 932 (1852)
-+......+.-|....+.-...||-.+.+ ...+...++.+|.. .|+++-.+..+...++++ .|+
T Consensus 106 ~~~~~~~~l~~L~~~~~~L~~~lp~~~~~-----~~~~~~~~i~~L~~----ll~~l~~l~~eR~~~~~~lk~~~~~d~i 176 (296)
T PF13949_consen 106 KLESIEENLELLSGPIEELEASLPSSSPS-----DSPQVSEVIRQLRE----LLNKLEELKKEREELLEQLKEKLQNDDI 176 (296)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHS--B--------SSGSS-HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHcCChhhHHhhCCCCCcc-----cccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 77776666655555555444456654322 22222555555554 455666666666655542 232
Q ss_pred hhhhc-------ccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH--HHhHhhhhhccccc
Q 000211 933 AEMSF-------SKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV--EENNAQRHTDLFSD 1003 (1852)
Q Consensus 933 ~~~~~-------~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~--ee~y~~~~~~l~s~ 1003 (1852)
...-. ..-+.=+...-+||.-+...+-.-+..-+.+++.++...+.++...+...+. -+.+.+.-..-+..
T Consensus 177 ~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~ 256 (296)
T PF13949_consen 177 SKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDA 256 (296)
T ss_dssp HHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 22222 0112223333456766666666666677778888888777777666553222 22233222233333
Q ss_pred hhHHHHHHHHhhhccHHHHHHHHhhhhHHH
Q 000211 1004 LDYLEVELQQLSSKNRDLAQEILALQVVTE 1033 (1852)
Q Consensus 1004 l~~~e~elq~l~s~n~~l~~~i~~l~~v~~ 1033 (1852)
+..+-..|.+-..==.+|...+..|..-+.
T Consensus 257 y~el~~~l~eG~~FY~~L~~~~~~l~~~~~ 286 (296)
T PF13949_consen 257 YKELSSNLEEGLKFYNDLLEILNKLQQKVE 286 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444445444444444333
No 175
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.34 E-value=1.4e+02 Score=31.71 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhh
Q 000211 1203 NSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLN 1274 (1852)
Q Consensus 1203 nSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLd 1274 (1852)
..+|.++...+++....+-.++++.|-..-+++.+-..|+..++++..+-.....=.++|+..|.++...|+
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666664444455555556666666555554444444444444444444443
No 176
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=47.13 E-value=6.1e+02 Score=30.87 Aligned_cols=181 Identities=25% Similarity=0.217 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhH---HHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhH---hHHHhhhHHHHHhhhhHH
Q 000211 495 ALIQELEENQRHML---GELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEER---RDLESLNKELERRAVSAE 568 (1852)
Q Consensus 495 ~LkQeLEQ~q~q~~---~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~edl---~al~~~kvEqEqRAI~AE 568 (1852)
.|||.++..++.+- ..+-+-+.|+-.|...|..|++|-.--- .|+-+.-=|- .-..++|.|.|+---+-|
T Consensus 119 ~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~----~qlR~~llDPAinl~F~rlK~ele~tk~Kle 194 (330)
T KOG2991|consen 119 KLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV----AQLRSTLLDPAINLFFLRLKGELEQTKDKLE 194 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH----HHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34454555554332 2244455788889888888888754211 1111111111 223466666666555555
Q ss_pred HHHHH-Hhhh---hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcCCCCcchhhhhhhhhccCCCcchhhhhhhhh
Q 000211 569 AALKR-ARLN---YSIAVNQLQKDLELLSSQVLSMYQTNENLIKQAFVDSPQPTCQEYQDMVQNRKLNPEESHANRHLAC 644 (1852)
Q Consensus 569 eALRK-tRwn---nA~aaerLQeef~~LS~Qm~S~fe~NEkl~~qA~~Ea~e~~~q~~~~~~~~l~~~~~~~y~~kl~~~ 644 (1852)
++=-- +-|+ .+.|.-+|=-.++.| +.+||-+-.+| -..|+.++
T Consensus 195 e~QnelsAwkFTPdS~tGK~LMAKCR~L-------~qENeElG~q~--------------------------s~Gria~L 241 (330)
T KOG2991|consen 195 EAQNELSAWKFTPDSKTGKMLMAKCRTL-------QQENEELGHQA--------------------------SEGRIAEL 241 (330)
T ss_pred HHHhhhheeeecCCCcchHHHHHHHHHH-------HHHHHHHHhhh--------------------------hcccHHHH
Confidence 44221 2243 245556666666655 55676666554 12467778
Q ss_pred hhhcccccccccCccchHHhhhhhHHHHHHHHHH---HHHHHHHHHHhhhhHHHhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000211 645 QDQYIGVKKQHLGGDILIEDLKRSLYLQEGLYRK---VEEEACELLSVNIYLDVFSKTLQKTLLEASGEIRLMKERMDEL 721 (1852)
Q Consensus 645 ~n~~~~~k~q~l~~~i~~e~lkrsl~lqe~l~~~---ve~e~~em~~~ni~~~vfs~~l~et~~~a~~~i~~mker~~~l 721 (1852)
.-++..+|.++ +|||.| |++||.- +-++|.-|...=| +||+.+-+--.+|+.++--+..+
T Consensus 242 e~eLAmQKs~s-------eElkss---q~eL~dfm~eLdedVEgmqsTil-------iLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 242 EIELAMQKSQS-------EELKSS---QEELYDFMEELDEDVEGMQSTIL-------ILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred HHHHHHHHhhH-------HHHHHh---HHHHHHHHHHHHHHHhcchhhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777 777764 6889944 4456767766544 45677777778888888777666
Q ss_pred HHHhhcch
Q 000211 722 SHQLELST 729 (1852)
Q Consensus 722 ~~ql~~s~ 729 (1852)
++-.-++.
T Consensus 305 sqav~d~~ 312 (330)
T KOG2991|consen 305 SQAVGDKK 312 (330)
T ss_pred HHHhcccc
Confidence 66554444
No 177
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=47.04 E-value=6.4 Score=50.50 Aligned_cols=186 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccCHH------HHHHHHHHH
Q 000211 835 LLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLSSYGESFSELCLHNKSADQNLESKDLT------SVIMRLEVL 908 (1852)
Q Consensus 835 ~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~~~~~l~l~~~s~~~dl~~~d~~------~v~~~le~~ 908 (1852)
.|.+.+..++..++.+...+..-..-+..|+.+++.++...+..+..++ ..+....|++ .+-..|+.|
T Consensus 81 ~L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~------~~~~~~~~l~S~~~l~~l~~~l~~L 154 (619)
T PF03999_consen 81 PLKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN------PFDIDESDLPSLEELEELRQHLQRL 154 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc------cccCCCCCCCcHHHHHHHHHHHHHH
Confidence 3455555566666666555555455566677777777664433332222 0122223333 222233333
Q ss_pred HHHH---HHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHh---hhhhhhccHHHHHHHHHHHHHHhhh
Q 000211 909 QRNA---CQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRN---MIDKQSVSNALLQKLQLRFEAVADK 982 (1852)
Q Consensus 909 q~~~---c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~---m~~kl~~s~~l~qklq~~~e~~~~k 982 (1852)
+... ..+|..++.+...+..+-++ ... ...|+.|+.+ -.+-+.+|++.+.+|+.-+..+...
T Consensus 155 ~~e~~~R~~~v~~l~~~I~~l~~~L~~---~~~---------~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~ 222 (619)
T PF03999_consen 155 QEEKERRLEEVRELREEIISLMEELGI---DPE---------RTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEE 222 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---Ccc---------cccchhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3322 33344444444333332222 111 3456666665 3567778888877776655444332
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhh
Q 000211 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQ 1040 (1852)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~ 1040 (1852)
..---+-=+.|...=..|..+|+-=+.+.+.....|..+.. ..|+.+-.|++|+..
T Consensus 223 k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~--~~i~~l~~El~RL~~ 278 (619)
T PF03999_consen 223 KEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSL--DTIEALEEELERLEE 278 (619)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchH--HHHHHHHHHHHHHHH
Confidence 21111111122222233444444444444444566666654 334446666666543
No 178
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.97 E-value=3e+02 Score=35.91 Aligned_cols=352 Identities=20% Similarity=0.220 Sum_probs=179.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhhhhcc--chhhhccchhHHhhHHhhhhccccchhh
Q 000211 704 LLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFLNEYK--ASCIAKCNDMALQNQLLESNLQDVTCEN 781 (1852)
Q Consensus 704 ~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~sl~e~~--~~~i~kc~d~a~~nq~lea~lq~~~~en 781 (1852)
+++-...++...+.++-...+|+ | +.=.+.+|++|.- .+|.+ .+--.|+=|.+.++.|+.
T Consensus 78 ~le~~~~l~~fs~~~~~~~~~l~-----------k--~lpy~~~s~eee~~~s~ct~---~L~~~N~~l~~~~~~~~~-- 139 (518)
T PF10212_consen 78 TLETAVKLKDFSEHFSSYVCFLQ-----------K--ILPYQLKSLEEECESSLCTA---ALSARNMELHSDMKRLTA-- 139 (518)
T ss_pred ccCcccchHHHHHHHHHHHHHHH-----------H--HhHHHHHHHHhhcccccchH---HHHHHhHHHHHHHHHHHH--
Confidence 35555666777777666655543 1 1224567777643 35655 344578888888888875
Q ss_pred hHHHhhhhhHHHHHHhh---------hhhhhHHHHHHHHhHHHHHHHHHhh---hhcccchhhhHHHHHHHHHhhHhh-h
Q 000211 782 RHLTQKLSEWESLMMDF---------KSFQSKYEAIAAEKTELANLLEKES---LENGNLRRETSLLQKELETVKIDF-D 848 (1852)
Q Consensus 782 ~~l~~k~~e~e~~v~e~---------~~~esky~ac~~e~~~l~~ll~ke~---l~~~~l~~e~~~~~~~~~~~k~~~-~ 848 (1852)
+++||++.=+++.-+ -+|-.-|.--++=-..|-+.+..=+ =.+-.+-.++-..-..|.+.-+=+ .
T Consensus 140 --~fek~~~yi~~la~~s~~~~~~~~~n~s~v~~~l~~~l~~l~d~~k~~sk~y~~k~~~E~~~pt~tqkl~t~~~c~~~ 217 (518)
T PF10212_consen 140 --VFEKLQTYISLLALPSTKPDGLLRANYSAVFTQLAASLHKLHDVLKDLSKHYNQKASLEHRLPTATQKLRTTNECILS 217 (518)
T ss_pred --HHHHHHHHHHHHhcccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhheeeccHHHHHH
Confidence 678887766655422 1222222223333334444443211 111112223334444555554444 6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhh--hccccccc---ccccccccccc---------------ccccCHHHHHH-----
Q 000211 849 ELASVNKNLQRTINNLQNKMHDMLS--SYGESFSE---LCLHNKSADQN---------------LESKDLTSVIM----- 903 (1852)
Q Consensus 849 ~~~s~~~~lq~~~~~lq~kl~~~l~--sy~~~~~~---l~l~~~s~~~d---------------l~~~d~~~v~~----- 903 (1852)
-+.++....-.+++|+.+-|.=+-+ +|..+-.. =|+.++++-+- .++--|...+.
T Consensus 218 sl~~l~~~~~k~a~f~~nnld~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~~~svpy~~a~~n~ril 297 (518)
T PF10212_consen 218 SLVSLTNGTGKIAAFFSNNLDFFTSSSGYGPKGATTFTNPLSAECMLQYKKRAAAYMSSLKKPCPESVPYEEALANRRIL 297 (518)
T ss_pred HHHHHHhhhHHHHHHHhcchHHhhcccccCCCcccccCCccchHHHHHHHHHHHHHHHHhcCCCCccCChHHHHhhhHHH
Confidence 6777777777888888887766655 55544221 13433332210 11112221111
Q ss_pred -----H---HHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHH------------HhhHHhhhhhhh
Q 000211 904 -----R---LEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKF------------EHDLRNMIDKQS 963 (1852)
Q Consensus 904 -----~---le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~------------e~d~~~m~~kl~ 963 (1852)
+ |-.=-+++=+||.+|.+||+-..=|.+.++..+.+-=--+.++.... ..+..+--..-.
T Consensus 298 ~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se 377 (518)
T PF10212_consen 298 LSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSE 377 (518)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccccccccc
Confidence 1 11112456678888888888877777777665553211111111111 111000000001
Q ss_pred ccHHHHHHHHHHHHHHhhhhccc-----hHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhh
Q 000211 964 VSNALLQKLQLRFEAVADKLKVS-----SEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRS 1038 (1852)
Q Consensus 964 ~s~~l~qklq~~~e~~~~k~k~~-----se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~t 1038 (1852)
++.. ...-....-++.+.+.+. +|.+.+..-.-.=|.+++++|=.++|..-||+.....+-.+|..-..
T Consensus 378 ~s~~-~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~----- 451 (518)
T PF10212_consen 378 ASSQ-SVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE----- 451 (518)
T ss_pred cccc-ccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1110 000011111222222222 24444544445556778888888888888888877777666643221
Q ss_pred hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhh
Q 000211 1039 KQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSD 1100 (1852)
Q Consensus 1039 K~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsd 1100 (1852)
....+++ .+..||++.++..+.|.|||.+-|..-++=.+..++
T Consensus 452 -----~aE~ek~--------------~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 452 -----SAEKEKE--------------SLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred -----HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1122222 255678999999999999999888776654444433
No 179
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=46.04 E-value=28 Score=34.62 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=19.4
Q ss_pred hhhhhhhh--cCCCcccccceeecchhhcc
Q 000211 85 KLYKFVVA--MGSSRSSILGEATINLADYA 112 (1852)
Q Consensus 85 kiYkfVVs--~GSsksgiLGEasinlAdY~ 112 (1852)
+...|.|- .+.++..++|++.|+++++.
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 83 RTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 34444442 23457889999999999984
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.39 E-value=4.2e+02 Score=31.21 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 474 ESKAERESLAKKMDQMECYYEALIQELEENQ 504 (1852)
Q Consensus 474 ~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q 504 (1852)
..-+++.+|+.+|.||.-.+..-.++|.+++
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e 32 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESE 32 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888877766644
No 181
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=45.24 E-value=47 Score=36.36 Aligned_cols=61 Identities=26% Similarity=0.325 Sum_probs=44.7
Q ss_pred hhhhhhhh-hcCC--CcccccceeecchhhcccccCCeeeeecCC--CCCCCCeEEEEEeeeccCCc
Q 000211 84 EKLYKFVV-AMGS--SRSSILGEATINLADYADASKPSTVLLPLH--GGDSGTILHVTVQLLTSKTG 145 (1852)
Q Consensus 84 ekiYkfVV-s~GS--sksgiLGEasinlAdY~~a~kp~~VSLPLk--~cnsGtvLHVtIQ~l~~~t~ 145 (1852)
.+-.+|-| .-|. .+..++|+|.|+|+.+..... ..-++||. +-..|+-|||.|..-.|-+|
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~ 142 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRLREPLTG 142 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEecCCCcc
Confidence 44455555 4432 478999999999999877554 55688885 33489999999998877554
No 182
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.23 E-value=4.1e+02 Score=35.59 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhc
Q 000211 1289 ELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNV 1368 (1852)
Q Consensus 1289 EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~q 1368 (1852)
.+..++-.+..|+...+-+..+ +..|+..|.+++..+....-.+-....-|+..+.+...|......--..+..++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~- 296 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK- 296 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555566666666555444 677888888888777665555555555566666666666554444444555555
Q ss_pred cHHHHHHHhhhhhhHHHHHH
Q 000211 1369 DVETVLNSCLAREAQCNEEN 1388 (1852)
Q Consensus 1369 Daedeln~~lksEa~~~keN 1388 (1852)
++.+.++.+.|+....+=|
T Consensus 297 -~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 297 -KEKEERRKLHNEILELKGN 315 (670)
T ss_pred -HHHHHHHHHHHHHHHhhcC
Confidence 6666666665555444433
No 183
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=45.02 E-value=25 Score=35.91 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=39.0
Q ss_pred hhhhhhhhhc--CCCcccccceeecchhhcccc-cCCeeeeecCCCCCCCCeEEEEEeeec
Q 000211 84 EKLYKFVVAM--GSSRSSILGEATINLADYADA-SKPSTVLLPLHGGDSGTILHVTVQLLT 141 (1852)
Q Consensus 84 ekiYkfVVs~--GSsksgiLGEasinlAdY~~a-~kp~~VSLPLk~cnsGtvLHVtIQ~l~ 141 (1852)
.+...|.|-- ..++..++|.+.|.++++... .......+||. +.|. +||.|++-+
T Consensus 73 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~-l~l~~~~~~ 130 (132)
T cd04014 73 GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGK-LHVKIELKG 130 (132)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcE-EEEEEEEec
Confidence 3455555521 224678999999999999885 56678999998 3455 499887753
No 184
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.79 E-value=5.7e+02 Score=29.85 Aligned_cols=122 Identities=11% Similarity=0.211 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhh
Q 000211 1061 EESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSL 1140 (1852)
Q Consensus 1061 ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~L 1140 (1852)
...-++-+.++.+...|++...-...-+...+.++..+..|..+.+.++....--... -.+....++.-...+.+|
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~----~~~l~~~t~~t~~~a~~L 92 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRK----AQQLNNNTERTLQRAQDL 92 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777766665555444211111 122222222222222222
Q ss_pred hhhhHHHHHHHHHHHhHhhhhhhhhhhhhcccc-----chHHHHhhhhhhHHHHHHHHHhh
Q 000211 1141 QNKSEEAAKLAVELDSVRNSLQSVHDELHGERS-----LSDELKSRAIDISSQLNEKQQQL 1196 (1852)
Q Consensus 1141 ls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~-----~~e~LQsk~~Dves~Ln~~~~~e 1196 (1852)
.. ....+...|.++..++..+-. ....|+..-.+++.+|..-..+-
T Consensus 93 ~~----------~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 93 EQ----------FIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HH----------HHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 122244455555555554443 67888889999999998876664
No 185
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=44.74 E-value=47 Score=34.07 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=26.3
Q ss_pred chhhhhhhhh-hcC-CCcccccceeecchhhcccccCCeeeeecC
Q 000211 82 YDEKLYKFVV-AMG-SSRSSILGEATINLADYADASKPSTVLLPL 124 (1852)
Q Consensus 82 ~~ekiYkfVV-s~G-SsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1852)
++.....|-| ..| .++..+||++.|+|+++--. .+.+.-.||
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~-~~~~~W~~L 124 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS-NTQPTWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC-CCCcceEEC
Confidence 4444444544 222 35788999999999998543 444444454
No 186
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.64 E-value=2.3e+02 Score=37.11 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=99.5
Q ss_pred chhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000211 458 ADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1852)
Q Consensus 458 t~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1852)
+..|+.+|-+..++|-.++.+|+.+++--+-|+--||..+..-| -..+-++.|+.=..+++......|-.-.+==+
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe----~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq 665 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQE----DLMNRMKKLLHSFHSELPVLSDAERDFKKELQ 665 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 46788999999999999999999999999999999987664311 11145777887778888777777766655558
Q ss_pred HHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Q 000211 538 DVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARL-NYSIAVNQLQKDLELLSSQVL 597 (1852)
Q Consensus 538 el~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRw-nnA~aaerLQeef~~LS~Qm~ 597 (1852)
-+++|..-+...+++++.-+.-|-+---+.-+||.|--. .-+.---.+|.=+..|+-...
T Consensus 666 ~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~ 726 (741)
T KOG4460|consen 666 LIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIR 726 (741)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988887766666666677778876433 223344557777776665443
No 187
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.23 E-value=8.5e+02 Score=31.70 Aligned_cols=35 Identities=23% Similarity=0.083 Sum_probs=24.3
Q ss_pred hHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhh
Q 000211 1241 SKETLQSLRDELQSERSLRDELKNVVTDLTSQLNE 1275 (1852)
Q Consensus 1241 Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdE 1275 (1852)
|...|-+.+.||-.--+.-..+-..|.+|.+|++-
T Consensus 453 llt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 453 LLTRIHLNCMEILEMIRETGALKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH
Confidence 34445555666766666667888888888888875
No 188
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=44.22 E-value=6.9e+02 Score=30.63 Aligned_cols=134 Identities=21% Similarity=0.255 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhh--------hHHhHHHHH
Q 000211 461 VGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLY--------TVSSAKAEI 532 (1852)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~--------tIs~Leaqv 532 (1852)
++.=+-.|...++..+.|...|..+++.+--.|..|+.+....+. +...++++..|..+|=. .|..+..++
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~-e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei 220 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE-ELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI 220 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 333445567777788888888888887777766666664333221 11112222233333211 123333333
Q ss_pred HHH---HHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000211 533 EAM---RLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQLQKDLELLSSQ 595 (1852)
Q Consensus 533 e~L---eeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaerLQeef~~LS~Q 595 (1852)
+.+ -.+++.|......++++.+..+.+....=-.||--+...|-=...=+.+|+..|+.|..+
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 322 345566677777777888888887776655666666666766677788999999888654
No 189
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.96 E-value=89 Score=35.88 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=14.4
Q ss_pred HhhhhhccccchhHHHHHHHHhhhccHH
Q 000211 993 NAQRHTDLFSDLDYLEVELQQLSSKNRD 1020 (1852)
Q Consensus 993 y~~~~~~l~s~l~~~e~elq~l~s~n~~ 1020 (1852)
|-+..+-+-.++..++.|++.++.+-..
T Consensus 84 ~Ls~~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 84 QLSTTPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666666655544333
No 190
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=43.55 E-value=49 Score=34.71 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=59.0
Q ss_pred eeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh--hcCCCccc
Q 000211 22 FHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV--AMGSSRSS 99 (1852)
Q Consensus 22 FhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV--s~GSsksg 99 (1852)
..|..+|...+....=.+|.+-.|..+.||. ..-.+-+..|...+.=.+ .++.. ....|-| .-..++..
T Consensus 22 i~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~-vi~~t~nP~Wne~f~f~v---~~~~~-----~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 22 VEGRDLKPCNSNGKSDPYCEVSMGSQEHKTK-VVSDTLNPKWNSSMQFFV---KDLEQ-----DVLCITVFDRDFFSPDD 92 (136)
T ss_pred EEeeCCCCCCCCCCcCcEEEEEECCEeeecc-ccCCCCCCccCceEEEEe---cCccC-----CEEEEEEEECCCCCCCC
Confidence 5577777654433222222233455555443 222345566766543222 23221 2223333 11224668
Q ss_pred ccceeecchhhccc----ccCCeeeeecCCCCCCCCeEEEEE
Q 000211 100 ILGEATINLADYAD----ASKPSTVLLPLHGGDSGTILHVTV 137 (1852)
Q Consensus 100 iLGEasinlAdY~~----a~kp~~VSLPLk~cnsGtvLHVtI 137 (1852)
+||.+.|++.+... ...|++--+||++-+.| -+||+|
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g-~i~l~~ 133 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEVPTG-EVVVKL 133 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccccce-eEEEEE
Confidence 99999999999986 34566677899888888 566665
No 191
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.19 E-value=1.9e+02 Score=31.75 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=4.3
Q ss_pred HHHHhHHHHHHH
Q 000211 1243 ETLQSLRDELQS 1254 (1852)
Q Consensus 1243 ~~L~Sl~eEL~~ 1254 (1852)
+.+..+.+.+.+
T Consensus 172 ~~~~~l~~~~~~ 183 (191)
T PF04156_consen 172 ENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 192
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=42.96 E-value=34 Score=34.38 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCCCCCC---CCeEEEEEee
Q 000211 94 GSSRSSILGEATINLADYADASKPSTVLLPLHGGDS---GTILHVTVQL 139 (1852)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cns---GtvLHVtIQ~ 139 (1852)
..++..++|.+.|++++... ..+..+.+||.+.+. .+.|||.+.+
T Consensus 72 ~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 72 RGLTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred CCCCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 33578899999999998875 678889999965443 4677887754
No 193
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.89 E-value=4.1e+02 Score=29.70 Aligned_cols=108 Identities=19% Similarity=0.356 Sum_probs=55.6
Q ss_pred HHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHhhh---hccccccccccccccccccccccCHHHHHHHHHHHHHHHH
Q 000211 837 QKELETVKIDFDELASVNKNLQRTINNLQNKMHDMLS---SYGESFSELCLHNKSADQNLESKDLTSVIMRLEVLQRNAC 913 (1852)
Q Consensus 837 ~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~l~---sy~~~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~~~c 913 (1852)
-+.|..++..++.+..--..+...+..|....+++.. -|...++.|.-.+.+ .++...+.++-......+
T Consensus 23 D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-------~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-------KSLSEALSQLAEAFEKIS 95 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------chhHHHHHHHHHHHHHHH
Confidence 3567777888877776666666666666665555544 444555554433333 334444444333222221
Q ss_pred H------------------HHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHH
Q 000211 914 Q------------------KIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKF 951 (1852)
Q Consensus 914 ~------------------kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~ 951 (1852)
. ..++.+.--+.+.+-|+.+...+..++.++...|..+
T Consensus 96 ~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~ 151 (236)
T PF09325_consen 96 ELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQL 151 (236)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1222233334444555555555566666655555444
No 194
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=42.65 E-value=17 Score=37.91 Aligned_cols=71 Identities=20% Similarity=0.405 Sum_probs=45.4
Q ss_pred EEEeecCCC-ccccccccccccCCcccCCcccchhh-hhccccchhcchhhhhhhhhh--cCCCcccccceeecchhhcc
Q 000211 37 ISFIPADSG-KAIGKTTKANVRNGTCKWADPIYETT-RLLQDIKTKQYDEKLYKFVVA--MGSSRSSILGEATINLADYA 112 (1852)
Q Consensus 37 vSiVp~D~G-K~taKt~Ka~Vr~G~C~W~dpiyEtv-kl~qD~kt~~~~ekiYkfVVs--~GSsksgiLGEasinlAdY~ 112 (1852)
|+++|.... +... |..|..++ .+|+|.-+ .| +....+..++...|-|- .+.++..+||++.|.|+++-
T Consensus 41 v~Llp~~~~~~~~~---kT~v~~~t---~nPvfnE~F~f--~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~ 112 (124)
T cd08680 41 VALLPCSSSTSCLF---RTKALEDQ---DKPVFNEVFRV--PISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFE 112 (124)
T ss_pred EEEccCCCCCCceE---EcCccCCC---CCCccccEEEE--ECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhcc
Confidence 556786643 2233 34466555 57777544 33 35556667777777662 35568889999999999984
Q ss_pred ccc
Q 000211 113 DAS 115 (1852)
Q Consensus 113 ~a~ 115 (1852)
...
T Consensus 113 ~~~ 115 (124)
T cd08680 113 SSE 115 (124)
T ss_pred CCC
Confidence 433
No 195
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.54 E-value=1.7e+02 Score=32.71 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHhHHHhhhhhhhhHHhHHHHHHHHH
Q 000211 460 SVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRH---MLGELQNLRNEHSSCLYTVSSAKAEIEAMR 536 (1852)
Q Consensus 460 ~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q---~~~ElqnLr~EhS~~l~tIs~Leaqve~Le 536 (1852)
.+.+++.++..++...++.-......+..++-....|..++.+..-. ...-++.++.||.+.-...+.++.....|+
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444432221111 112356677888887778888888888888
Q ss_pred HHHHHHHHHHh
Q 000211 537 LDVDEQVLRFS 547 (1852)
Q Consensus 537 eel~~Q~~rF~ 547 (1852)
.|=.+=+.|+-
T Consensus 172 ~En~~Lv~Rwm 182 (194)
T PF08614_consen 172 EENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666664
No 196
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.38 E-value=66 Score=40.99 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhh
Q 000211 1387 ENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLL 1455 (1852)
Q Consensus 1387 eNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL 1455 (1852)
--+.|-..+.+++.+++.++.+|+.|...|+.++.....-.+++...+..+..+ ...+.++|+.-+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~---~~~~~~ql~~~~ 125 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQE---LTKEIEQLKSER 125 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHH---HHHHHHHHHHHH
Confidence 345788899999999999999999999999998887777777777777664433 444555544433
No 197
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=42.14 E-value=20 Score=36.73 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=37.7
Q ss_pred EEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh-h--cCCCcccccceeecchhhccc
Q 000211 37 ISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-A--MGSSRSSILGEATINLADYAD 113 (1852)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s--~GSsksgiLGEasinlAdY~~ 113 (1852)
|.+.|....... .|+.|..+++ +|+|.-+=.. +.....+..+|- |.| . .++.++.+||++.|.++++..
T Consensus 38 v~l~p~~~~~~~---~kT~v~~~t~---~P~~nE~F~f-~v~~~~~~~~l~-v~V~~~~~~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 38 ISLSPDKEVRFR---QKTSTVPDSA---NPLFHETFSF-DVNERDYQKRLL-VTVWNKLSKSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred EEEEeCCCCcce---EeCccccCCC---CCccccEEEE-EcChHHhCCEEE-EEEECCCCCcCCCEEEEEEEecHHHhcc
Confidence 445665433222 2444555555 6666432211 222233444443 555 2 244568899999999999973
No 198
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.84 E-value=8.1e+02 Score=30.77 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhh
Q 000211 1037 RSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSL 1080 (1852)
Q Consensus 1037 ~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSL 1080 (1852)
....-+.++..+-..+.....|+......+-.+++.+++.+...
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEE 294 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhh
Confidence 33444666666666677777777777777777777777765543
No 199
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=41.82 E-value=7.3e+02 Score=30.27 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=99.0
Q ss_pred cchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhH-------------HHHHHHHhHhHHHhhhhhcccc
Q 000211 1173 SLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSEN-------------QALMVSLQEYAEESSRLASEGN 1239 (1852)
Q Consensus 1173 ~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en-------------~a~mv~L~d~kee~aq~a~e~~ 1239 (1852)
...+.||..-.||+..|+.+-..-.....+|..|-..+..|++.- -++-+.|.+-+=.. ..-...
T Consensus 107 el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q--~~~~~~ 184 (309)
T PF09728_consen 107 ELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQ--QQEEAE 184 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHH
Confidence 456789999999999999999999999999999998888873221 12222222222000 000001
Q ss_pred chHHHHHhHHH-------HHHHhhhhHHHhhHHHHHhhhhhhhhhhhh----hcccccchHHHHHHHHHhhhHhhhhhhh
Q 000211 1240 TSKETLQSLRD-------ELQSERSLRDELKNVVTDLTSQLNEKHCQL----LDLDQQKSELVQLKLLVLDLESEKSRAS 1308 (1852)
Q Consensus 1240 ~Lk~~L~Sl~e-------EL~~ersLreeLE~tV~~L~skLdEk~~qL----~~fd~~~~EL~~Lk~qv~DLese~S~~~ 1308 (1852)
.-.+-..-+.+ .+....-.--+|...+..-..+-++-+-.| ..|+..+.|+...-+.+..||+++....
T Consensus 185 ~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k 264 (309)
T PF09728_consen 185 QEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK 264 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111222 333333333344444444455555555444 2356666777777777777777666322
Q ss_pred hhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 000211 1309 EESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTE 1362 (1852)
Q Consensus 1309 ~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eE 1362 (1852)
--++..-++=+.++..++.+...+.-+.-|+.-.-+.---
T Consensus 265 --------------~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 265 --------------SKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred --------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556677777777777777777776554444333
No 200
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.80 E-value=7.6e+02 Score=30.42 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhc
Q 000211 1342 YEAWVEELVQQVYSTDRLLTELHTKNV 1368 (1852)
Q Consensus 1342 YEtkvqEL~~QL~~Skk~~eElq~K~q 1368 (1852)
++..+.+++++|..+..-+..+..++.
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555555555555555555555543
No 201
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.81 E-value=3.5e+02 Score=32.82 Aligned_cols=42 Identities=38% Similarity=0.434 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 461 VGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE 502 (1852)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1852)
....+-++..|++.++.+.++|...+..|+...+.|-+++++
T Consensus 41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777778888888888888888777777777666
No 202
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.63 E-value=7.2e+02 Score=32.35 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhh
Q 000211 918 QLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKL 983 (1852)
Q Consensus 918 ~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~ 983 (1852)
.+.++...+.++....+......+.++..+...++..-...-+|+..=...-++|..+|+.+|+++
T Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 57 HWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666777777778888889999999999999999888888899999999999984
No 203
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=40.49 E-value=43 Score=33.63 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.1
Q ss_pred hcCCCcccccceeecchhhcccc
Q 000211 92 AMGSSRSSILGEATINLADYADA 114 (1852)
Q Consensus 92 s~GSsksgiLGEasinlAdY~~a 114 (1852)
..+..+..++|++.|.+++....
T Consensus 92 d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 92 DEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred EcCCcCCeeEEEEEEEcccCCCC
Confidence 33333778999999999987653
No 204
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=39.98 E-value=25 Score=35.36 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCcccCCcccchhhhhccccchhcchhhhhhhhh-hcCC-CcccccceeecchhhcccccCC----eeeeecCCCC--CC
Q 000211 58 NGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AMGS-SRSSILGEATINLADYADASKP----STVLLPLHGG--DS 129 (1852)
Q Consensus 58 ~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~GS-sksgiLGEasinlAdY~~a~kp----~~VSLPLk~c--ns 129 (1852)
+.+..|...++=.+.-.. -+. ......|.| .-+. .+..+||++.|.+++....... ...+.||.+- ..
T Consensus 44 ~~~P~Wne~f~f~v~~~~---~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 44 GTNPTWNETLRFPLDERL---LQQ-GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred CCCCCCCCEEEEEcChHh---ccc-CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 357788876654433211 000 112233333 4443 5778999999999999986653 4678888643 24
Q ss_pred CCeEE
Q 000211 130 GTILH 134 (1852)
Q Consensus 130 GtvLH 134 (1852)
+.+||
T Consensus 120 ~G~~~ 124 (125)
T cd04051 120 QGVLN 124 (125)
T ss_pred CeEEe
Confidence 45555
No 205
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.94 E-value=1.3e+02 Score=36.39 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhH
Q 000211 1044 ELTEENRALMVALQDKSEESVKLALEVDSFKQSFQ 1078 (1852)
Q Consensus 1044 el~~En~al~~slqdK~ees~~~~~El~slK~s~q 1078 (1852)
.|..|..++..-|..-..+...+..|+..|+.-..
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333334444444444444333
No 206
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.82 E-value=2.9e+02 Score=36.05 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=56.5
Q ss_pred HHhHHHhhHhhhHHHHHHHHhh-----------hhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHH
Q 000211 1070 VDSFKQSFQSLHDELLVERSLR-----------DDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMV 1138 (1852)
Q Consensus 1070 l~slK~s~qSLhdEl~aersl~-----------edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~ 1138 (1852)
++.|.+-|-++..|+.++|+-- +...+.+++..-+|.....+..+...+.+..-.......|+...+++
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776543 44445556666666666666655555555555555555666666666
Q ss_pred hhhhhhHHHHHHHHHHHhHhhhhh
Q 000211 1139 SLQNKSEEAAKLAVELDSVRNSLQ 1162 (1852)
Q Consensus 1139 ~Lls~sEe~~k~A~t~~q~e~~lq 1162 (1852)
.|-++..+++..+.+.+-+..+|+
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555554444444
No 207
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=38.63 E-value=3.6e+02 Score=35.91 Aligned_cols=146 Identities=20% Similarity=0.229 Sum_probs=75.0
Q ss_pred HHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhh---hhcccchhhhHHH
Q 000211 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRAS---EESSSVTSLQSEL 1321 (1852)
Q Consensus 1245 L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~---~ktsefk~Ls~hL 1321 (1852)
|.+-++-|+.+-..+-.||..-.||-+.+.++...+ ..||.+.-++- +.++ +|--|+
T Consensus 155 LnatEEmLQqellsrtsLETqKlDLmaevSeLKLkl-----------------talEkeq~e~E~K~R~se---~l~qev 214 (861)
T KOG1899|consen 155 LNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKL-----------------TALEKEQNETEKKLRLSE---NLMQEV 214 (861)
T ss_pred hchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHH-----------------HHHHHHhhhHHHHHHhHH---HHHHHH
Confidence 666677777777778888888878777666654444 44444333331 2233 343333
Q ss_pred HHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHH----HHHhhhhhhHHHHHHHHHHHhHH
Q 000211 1322 SEMH-ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETV----LNSCLAREAQCNEENARLLTSLD 1396 (1852)
Q Consensus 1322 ~El~-e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaede----ln~~lksEa~~~keNaeL~~~I~ 1396 (1852)
...+ .- +.-.+-|||+++---++-+...+.|.. .|+-|+... ..+.++.=-.+..+.++|-..+.
T Consensus 215 n~~kv~e-------~~~erlqye~klkstk~e~a~L~Eq~~---eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~e 284 (861)
T KOG1899|consen 215 NQSKVGE-------VVQERLQYETKLKSTKGEMAPLREQRS---EKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALE 284 (861)
T ss_pred HHHHHHH-------HHHHHHHHHhhcccccchhhhHHHHHh---hhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Confidence 3111 11 123466888875432222222222221 122222222 22223333345556667776666
Q ss_pred HHH---HHHHHHHHhhHhhhhchhhhh
Q 000211 1397 TLR---SELDSAIAENRVLFHENNSLI 1420 (1852)
Q Consensus 1397 eLe---sELeasiaekR~L~nand~~~ 1420 (1852)
++- .+-+.-|++.|...|.||.+.
T Consensus 285 slm~ane~kdr~ie~lr~~ln~y~k~~ 311 (861)
T KOG1899|consen 285 SLMRANEQKDRFIESLRNYLNNYDKNA 311 (861)
T ss_pred HHHhhchhhhhHHHHHHHHhhhhhhhh
Confidence 653 344566777788888888553
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=38.56 E-value=1e+03 Score=31.08 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=72.1
Q ss_pred HHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccH
Q 000211 1291 VQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDV 1370 (1852)
Q Consensus 1291 ~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDa 1370 (1852)
..|.+.|.+|--.-.+|+- |-..=..|++=-+-||.+--|||..|.-.+.+++-|..=|.-+.||+.|--....-.
T Consensus 341 ~yLe~kvkeLQ~k~~kQqv----fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetL 416 (527)
T PF15066_consen 341 LYLEKKVKELQMKITKQQV----FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETL 416 (527)
T ss_pred HHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567777777766666542 222333444444666778888888888888888888888888888887754433333
Q ss_pred HHHHHHhhhhhhHHHHH----HHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchh
Q 000211 1371 ETVLNSCLAREAQCNEE----NARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSE 1424 (1852)
Q Consensus 1371 edeln~~lksEa~~~ke----NaeL~~~I~eLesELeasiaekR~L~nand~~~AElE 1424 (1852)
.-++...+++=..+-+| ..+ -.+--+.=.|++.++++|-+=+.+--..+-|+|
T Consensus 417 qlelkK~k~nyv~LQEry~~eiQq-KnksvsqclEmdk~LskKeeeverLQ~lkgelE 473 (527)
T PF15066_consen 417 QLELKKIKANYVHLQERYMTEIQQ-KNKSVSQCLEMDKTLSKKEEEVERLQQLKGELE 473 (527)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33333333332222111 111 111223334555555555555555444444444
No 209
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=38.52 E-value=81 Score=28.87 Aligned_cols=39 Identities=38% Similarity=0.743 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHHHH
Q 000211 1469 REELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLSEQ 1517 (1852)
Q Consensus 1469 k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqklseq 1517 (1852)
|-++|++|+.|..+|+++ |+ .=..+..+|+.++++|-.+
T Consensus 6 kR~IElk~~elrd~LEe~--------g~--~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 6 KREIELKCLELRDELEEQ--------GY--SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH--------T----HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhC--------CC--CHHHHHHHHHHHHHHHHhc
Confidence 568999999999999996 44 2245678999999998764
No 210
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.15 E-value=1e+03 Score=31.01 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=32.3
Q ss_pred HHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhH
Q 000211 1067 ALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQ 1117 (1852)
Q Consensus 1067 ~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~ 1117 (1852)
...++.+..-++.+++-+..|...+..-.+....+...+.+.+.+...+-.
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777777666666666655555433333
No 211
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=38.10 E-value=1.1e+03 Score=32.42 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hHhHHHhhhHHHHH----------hhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000211 528 AKAEIEAMRLDVDEQVLRFSE---ERRDLESLNKELER----------RAVSAEAALKRARLNYSIAVNQLQKDLELLSS 594 (1852)
Q Consensus 528 Leaqve~Leeel~~Q~~rF~e---dl~al~~~kvEqEq----------RAI~AEeALRKtRwnnA~aaerLQeef~~LS~ 594 (1852)
++..|+.|+++.++.+.+-.. =..-++-+|+|-.. --|.|=+.--|-++--|.-+--|++.|+.|-.
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~ 726 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEA 726 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHH
Confidence 466777777777777654332 22445555555532 34556666667777778888888888888877
Q ss_pred HHHhhh
Q 000211 595 QVLSMY 600 (1852)
Q Consensus 595 Qm~S~f 600 (1852)
..++.-
T Consensus 727 e~~~~~ 732 (762)
T PLN03229 727 ELAAAR 732 (762)
T ss_pred HHHHhh
Confidence 776543
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.10 E-value=2.7e+02 Score=29.80 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=63.6
Q ss_pred HHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhh-HHhhhhhhhhh
Q 000211 1363 LHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRA-ETMADNYGEHK 1441 (1852)
Q Consensus 1363 lq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~-E~~l~~~~Eek 1441 (1852)
++.++--....++.-+.+=-+.++++..|...+.+|+++..++....++|--.++.+...++.+|.-- +-..+-...++
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555556666668889999999999999999999999999888999999998777532 54555555555
Q ss_pred hhhHHHHHHH
Q 000211 1442 SQLALEVERM 1451 (1852)
Q Consensus 1442 sk~a~Eve~l 1451 (1852)
.+-.+|+..+
T Consensus 94 dka~lel~l~ 103 (107)
T PF09304_consen 94 DKAILELKLA 103 (107)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 6666665543
No 213
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.07 E-value=2.7e+02 Score=33.84 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=36.6
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 455 VNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQE 499 (1852)
Q Consensus 455 a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQe 499 (1852)
+-++.+| +||-+|-.-+|..|+||--=-.|||-|+-...--||+
T Consensus 11 GL~~~aL-qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK 54 (307)
T PF10481_consen 11 GLPTRAL-QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQK 54 (307)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555 6999999999999999999999999998887777775
No 214
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=37.96 E-value=1.2e+03 Score=31.77 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=68.6
Q ss_pred HHHHHhhhHhhhhhHHhhhhhhHHHH-----HHH--HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHh
Q 000211 1123 IQKTAVLTKENQDLMVSLQNKSEEAA-----KLA--VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQ 1195 (1852)
Q Consensus 1123 l~~~~~dlEea~sl~~~Lls~sEe~~-----k~A--~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~ 1195 (1852)
+-++..+++.-.+++..|-.|=.+.. .-+ .++-.|.+-++-|...-.++..-.+- ++.-|.|+=+..-=+
T Consensus 206 Lsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~EL---LqVRvqSLt~IL~LQ 282 (739)
T PF07111_consen 206 LSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAEL---LQVRVQSLTDILTLQ 282 (739)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444555555555555555544333 111 22233444444444333332222222 233344444444445
Q ss_pred hhhhhhhh-----------hHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhh
Q 000211 1196 LIDFDQQN-----------SEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSER 1256 (1852)
Q Consensus 1196 e~e~~~en-----------SeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~er 1256 (1852)
|.++.+-. ..+-+++.+-..-=|++||.|..+.-+ |-+.+.+|+--..+|+.++....
T Consensus 283 EeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQele---h~~~~~qL~~qVAsLQeev~sq~ 351 (739)
T PF07111_consen 283 EEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELE---HRDSVKQLRGQVASLQEEVASQQ 351 (739)
T ss_pred HHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 234455666677789999999887755 66777778888888887776553
No 215
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=37.79 E-value=76 Score=34.42 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=45.5
Q ss_pred eeeccccccc----ccc-eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh-h-cC
Q 000211 22 FHATHIQQTG----WDK-LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-A-MG 94 (1852)
Q Consensus 22 FhAtqVp~~g----wd~-L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s-~G 94 (1852)
..|..+|... .|. ..|++.|...|....||. ..-++-+..|...+ .........+.+....|.| . -.
T Consensus 34 i~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~-vi~~t~nP~WnE~f-----~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 34 KEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTP-VVKKSVNPVWNHTF-----VYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred EeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCC-ccCCCCCCCCCCEE-----EEecCCHHHhCCCEEEEEEEeCCC
Confidence 5566676543 222 223456777777666653 22233344444332 2221111223444555655 1 12
Q ss_pred CCcccccceeecchhhccc
Q 000211 95 SSRSSILGEATINLADYAD 113 (1852)
Q Consensus 95 SsksgiLGEasinlAdY~~ 113 (1852)
.++..+||++.|++++...
T Consensus 108 ~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCceEEEEEEeCCcccc
Confidence 3468999999999998764
No 216
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.36 E-value=79 Score=30.91 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=38.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhh
Q 000211 1035 FDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLH 1081 (1852)
Q Consensus 1035 ~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLh 1081 (1852)
..........|..|+-..+.+|+++-++..++-.|++.|++-+++.+
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333455678889999999999999999999999999999977654
No 217
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.20 E-value=7.2e+02 Score=30.24 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=70.6
Q ss_pred HHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH-HHHHHhhhHhhhhhHHhhhhhhHHHHHHH
Q 000211 1073 FKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL-IQKTAVLTKENQDLMVSLQNKSEEAAKLA 1151 (1852)
Q Consensus 1073 lK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL-l~~~~~dlEea~sl~~~Lls~sEe~~k~A 1151 (1852)
+|++|+-..+|+.---..+..++. .|-+||+..+...-++.-.||+| ++....+....-.++. ++
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q-----------~y 90 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQ-----------FY 90 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 466666666666544444444433 45567777777777778888888 6666666555544333 22
Q ss_pred HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 000211 1152 VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAE 1212 (1852)
Q Consensus 1152 ~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~ 1212 (1852)
--..+++.-+--+|.....++++--+|--.|+|++.. ..++.--.-+....|++.|+.
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra---kRati~sleDfeqrLnqAIEr 148 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA---KRATIYSLEDFEQRLNQAIER 148 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh---hhhhhhhHHHHHHHHHHHHHH
Confidence 2234456666666666666666666666666666643 333333333444455555443
No 218
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=37.19 E-value=6.4e+02 Score=33.86 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=76.2
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHH-HHHH
Q 000211 1176 DELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRD-ELQS 1254 (1852)
Q Consensus 1176 e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~e-EL~~ 1254 (1852)
+.--.|..|++..+.++..+.----+.--.=..++-+|...+-++|+++ -.||=-|..++. +.+.
T Consensus 135 eaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev--------------SeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 135 EAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV--------------SELKLKLTALEKEQNET 200 (861)
T ss_pred HHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH--------------HHhHHHHHHHHHHhhhH
Confidence 3334566677777766655432221111111122233444455555555 444444666652 3333
Q ss_pred hhhhH---HHh----hHHHHHhhhhhhhhhhhh-hcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHh
Q 000211 1255 ERSLR---DEL----KNVVTDLTSQLNEKHCQL-LDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHE 1326 (1852)
Q Consensus 1255 ersLr---eeL----E~tV~~L~skLdEk~~qL-~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e 1326 (1852)
|.-+| +.+ +++|..+ +-.+.|- +.+.-.++|+..|+.|+++-..+--+++. -+-.
T Consensus 201 E~K~R~se~l~qevn~~kv~e~----~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~-------------~lv~ 263 (861)
T KOG1899|consen 201 EKKLRLSENLMQEVNQSKVGEV----VQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLR-------------TLVQ 263 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHH-------------HHHH
Confidence 33333 222 2333332 2223333 55677899999999998876555544431 2223
Q ss_pred hhhhhhH--------------HHHHHHHHHHHHHHHHHHHHhhchh
Q 000211 1327 LLLAVDV--------------RLIFTRTQYEAWVEELVQQVYSTDR 1358 (1852)
Q Consensus 1327 ~l~A~dv--------------riiF~KeQYEtkvqEL~~QL~~Skk 1358 (1852)
.++|+.. ..+-..+|-+..+++|++=|.--+|
T Consensus 264 ~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k 309 (861)
T KOG1899|consen 264 RLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDK 309 (861)
T ss_pred HHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhh
Confidence 3333222 3344567777777887776654443
No 219
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=36.87 E-value=34 Score=33.75 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=27.4
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCC
Q 000211 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGD 128 (1852)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn 128 (1852)
.++..++|++.+++++... ..+...++||....
T Consensus 73 ~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g 105 (115)
T cd04040 73 GGKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG 105 (115)
T ss_pred CCCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC
Confidence 3478899999999999765 67789999997654
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.01 E-value=1.1e+03 Score=30.50 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=42.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhh
Q 000211 1036 DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQL 1112 (1852)
Q Consensus 1036 ~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL 1112 (1852)
.+.+.+-.++..-++.+ ........++..+|.+++..+.++..++..--.-...+....+++...|..+..+-
T Consensus 38 ~~l~q~q~ei~~~~~~i----~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKI----REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444445554444433 33345566777777777777777777666655555666666666666655444433
No 221
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=35.81 E-value=34 Score=33.96 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=39.5
Q ss_pred cccCCcccchhhhhccccchhcchhhhhhhhh-hcCCCcccccceeecchhhcccccCCeeeeecCCCCC-CCCeEEEEE
Q 000211 60 TCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AMGSSRSSILGEATINLADYADASKPSTVLLPLHGGD-SGTILHVTV 137 (1852)
Q Consensus 60 ~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn-sGtvLHVtI 137 (1852)
+..|...+.=.+.. +. .....|-| .-...+..++|++.|++++.... ......+||.... ...-||+.+
T Consensus 46 nP~Wne~f~f~v~~---~~-----~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~G~i~l~l 116 (118)
T cd08681 46 HPEWDEELRFEITE---DK-----KPILKVAVFDDDKRKPDLIGDTEVDLSPALKE-GEFDDWYELTLKGRYAGEVYLEL 116 (118)
T ss_pred CCccCceEEEEecC---CC-----CCEEEEEEEeCCCCCCcceEEEEEecHHHhhc-CCCCCcEEeccCCcEeeEEEEEE
Confidence 67787665433332 11 12223323 22323378999999999998663 3456777885432 223566655
Q ss_pred e
Q 000211 138 Q 138 (1852)
Q Consensus 138 Q 138 (1852)
+
T Consensus 117 ~ 117 (118)
T cd08681 117 T 117 (118)
T ss_pred E
Confidence 4
No 222
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=35.70 E-value=3e+02 Score=27.34 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE 502 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1852)
+.|+.||--+..-|...+.+.++|..+=.++.-..+.|+++.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56888999998888888888888888877777666666665444
No 223
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=35.67 E-value=43 Score=36.64 Aligned_cols=69 Identities=29% Similarity=0.345 Sum_probs=58.2
Q ss_pred hhhhccccchHHHHH----hHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHh
Q 000211 1232 SRLASEGNTSKETLQ----SLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLES 1302 (1852)
Q Consensus 1232 aq~a~e~~~Lk~~L~----Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLes 1302 (1852)
+|+..|+..||+.+. +-..|+..+.+--..+..+|+.|.+++..++..|.. .|..=|.|+|+.+.||-.
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA--dhS~lllhvk~~~~DLr~ 130 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA--DHSTLLLHVKQFPKDLRS 130 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhh
Confidence 667778888888887 778899999999999999999999999988887743 456678899999999853
No 224
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.31 E-value=7.5e+02 Score=28.48 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhh----hhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhH
Q 000211 998 TDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEF----DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSF 1073 (1852)
Q Consensus 998 ~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~----~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~sl 1073 (1852)
++|-+.|..+.++++.+.-+|+.|=+==.--.....-+ ...=..++--.+|-+.|-.-+....+.-.-+...+...
T Consensus 15 ~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 15 KELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHhhhHHHHHHHHhhhhhHhh-HhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHH
Q 000211 1074 KQSFQSLHDELLVERSLRDDLKSA-VSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAV 1152 (1852)
Q Consensus 1074 K~s~qSLhdEl~aersl~edl~~~-vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~ 1152 (1852)
.+-+..+.+.+.....+.+|+.=. ...|+.+|+....-++.-+...+.|-. ......+++..++.+........-.
T Consensus 95 ~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek---~leL~~k~~~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK---QLELENKSFRRQLASEKKKHKEAQE 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhhhhhhhhhhhh
Q 000211 1153 ELDSVRNSLQSVHDELH 1169 (1852)
Q Consensus 1153 t~~q~e~~lqeL~~eL~ 1169 (1852)
+..++..-++.|.+.|+
T Consensus 172 ~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHH
No 225
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=35.25 E-value=49 Score=33.00 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.4
Q ss_pred CCCcccccceeecchhh
Q 000211 94 GSSRSSILGEATINLAD 110 (1852)
Q Consensus 94 GSsksgiLGEasinlAd 110 (1852)
+.++..++|++.|.+++
T Consensus 96 ~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 96 RDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCCcEeeEEEEeccc
Confidence 34578899999999998
No 226
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.02 E-value=6.5e+02 Score=27.73 Aligned_cols=77 Identities=30% Similarity=0.337 Sum_probs=61.0
Q ss_pred HhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhh-h-cccccchHHHHHHHHHhhhHhhhhh
Q 000211 1230 ESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL-L-DLDQQKSELVQLKLLVLDLESEKSR 1306 (1852)
Q Consensus 1230 e~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL-~-~fd~~~~EL~~Lk~qv~DLese~S~ 1306 (1852)
+......++......+..+.+++.....-++.+...+..|..+.+-...+- + +|+....++..|+..+..|+.+...
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666777888899999999999999999999988888876554 3 6999999999999999988877653
No 227
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.94 E-value=1.2e+03 Score=30.90 Aligned_cols=290 Identities=18% Similarity=0.210 Sum_probs=164.7
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhh
Q 000211 1191 EKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLT 1270 (1852)
Q Consensus 1191 ~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~ 1270 (1852)
.-+++--.|......+..-++.+ .++...++.|.+. +|-++-...|.+.++.+-.+++..+..=.-+..+.
T Consensus 154 ~vl~n~~~~Ge~~~~lEk~Le~i-~~~l~qf~~lt~~--------Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~ 224 (570)
T COG4477 154 DVLANRHQYGEAAPELEKKLENI-EEELSQFVELTSS--------GDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQ 224 (570)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHH-HHHHHHHHHhccC--------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665554 3344555555433 44466678899999999999999998888777766
Q ss_pred hhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh--hhhcccchhhhHHHHHHHhhhhh-----hhHHHHHHHHHHH
Q 000211 1271 SQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA--SEESSSVTSLQSELSEMHELLLA-----VDVRLIFTRTQYE 1343 (1852)
Q Consensus 1271 skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~--~~ktsefk~Ls~hL~El~e~l~A-----~dvriiF~KeQYE 1343 (1852)
..|= ++|..||.=|-+|.-+.=-. ..=-+.|.+|+.||++++..+.- +.=-+.||-+-.+
T Consensus 225 ~~lP-------------~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie 291 (570)
T COG4477 225 TELP-------------GQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIE 291 (570)
T ss_pred hhch-------------HHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHH
Confidence 5543 34566777776665543200 11123466778888877755544 1222333332222
Q ss_pred HHHHHHHHHHhhchhhHHHHHh---hhccHHHHHHHhhhhhhHHHHHHHH-----------HHHhHHHHHHHHHHHHHhh
Q 000211 1344 AWVEELVQQVYSTDRLLTELHT---KNVDVETVLNSCLAREAQCNEENAR-----------LLTSLDTLRSELDSAIAEN 1409 (1852)
Q Consensus 1344 tkvqEL~~QL~~Skk~~eElq~---K~qDaedeln~~lksEa~~~keNae-----------L~~~I~eLesELeasiaek 1409 (1852)
.-.+-|.+-+. -++..++.+. -+.+-..+.|.+++.|+.+.+++=. .+..|.++++-++++...-
T Consensus 292 ~lYd~lE~Eve-A~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~ 370 (570)
T COG4477 292 SLYDLLEREVE-AKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENI 370 (570)
T ss_pred HHHHHHHHHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222211 1222222222 2222335677888889888888744 4566777777777776665
Q ss_pred HhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHH
Q 000211 1410 RVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQ 1489 (1852)
Q Consensus 1410 R~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~ 1489 (1852)
-.-.-+|..+...++ ..++.+-.|..+--+.+..|.+|+.==-.-.+..+.+.. .=.||+-.+.|++|-+.=..
T Consensus 371 ~~~~~~yS~lq~~l~----~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~--~l~eikR~mek~nLPGlPe~ 444 (570)
T COG4477 371 EAQEVAYSELQDNLE----EIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKS--KLHEIKRYMEKSNLPGLPET 444 (570)
T ss_pred hcccccHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCCcHH
Confidence 555566665555554 344455555554444555555554433333333333332 23468888888888888777
Q ss_pred Hhcc-ccchhHHHHHHHHhHH
Q 000211 1490 VISS-EGYIDEQKMLQNQCNE 1509 (1852)
Q Consensus 1490 i~~~-~~~~~el~~l~~~~~e 1509 (1852)
+.++ ...++++..|-++.++
T Consensus 445 ~l~l~~~~~~~i~~l~~eLse 465 (570)
T COG4477 445 FLSLFFTAGHEIQDLMKELSE 465 (570)
T ss_pred HHHHHHhhhhHHHHHHHHHhh
Confidence 7555 7777777666555443
No 228
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=34.49 E-value=30 Score=35.55 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=43.1
Q ss_pred EEEeecCCCccccccccccccCC--cccCCcccchhhhhccccchhcchhhhhhhhh-hc-CCCcccccceeecchhhcc
Q 000211 37 ISFIPADSGKAIGKTTKANVRNG--TCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-GSSRSSILGEATINLADYA 112 (1852)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G--~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-GSsksgiLGEasinlAdY~ 112 (1852)
|++.|.+......|| .|..+ +..|...+.=.|. ..++.+....|-| .. +.++..+||++.|.+++|.
T Consensus 43 v~l~p~~~~~~~~kT---~v~~~t~nP~wnE~f~f~i~------~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 43 TYLLPDKSRQSKRKT---SIKRNTTNPVYNETLKYSIS------HSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred EEEEcCCccccceEe---eeeeCCCCCcccceEEEECC------HHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 456776643333344 23333 4456654421121 1223343444544 22 3457889999999999996
Q ss_pred cccCCeeeeecCC
Q 000211 113 DASKPSTVLLPLH 125 (1852)
Q Consensus 113 ~a~kp~~VSLPLk 125 (1852)
-. .....-+||.
T Consensus 114 ~~-~~~~~w~~l~ 125 (125)
T cd04029 114 FD-SQHEECLPLH 125 (125)
T ss_pred cc-CCcccEEECc
Confidence 54 4566666763
No 229
>PLN02939 transferase, transferring glycosyl groups
Probab=34.41 E-value=1.4e+03 Score=32.34 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=21.9
Q ss_pred HHHhhhhHHHhhHHHHHhhhhhhhhhhhh
Q 000211 1252 LQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1852)
Q Consensus 1252 L~~ersLreeLE~tV~~L~skLdEk~~qL 1280 (1852)
++.-..=||.|+.+|-+|.-.|.|-..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDARI 186 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhh
Confidence 55556667888888888888888866665
No 230
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.16 E-value=1.6e+02 Score=32.60 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=43.7
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHH
Q 000211 1003 DLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEEN 1049 (1852)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En 1049 (1852)
.++++..++|.+.+.=+.|-+.|-.|.....|+..++.|+..+..-.
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~ 53 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAG 53 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999999999999998766
No 231
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.66 E-value=7.8e+02 Score=28.23 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000211 461 VGGKIFELLRELDESKAERESLAKKMDQMEC 491 (1852)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL~l 491 (1852)
+..++.++..+|..-+.+++.|..++++.-.
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999998887544
No 232
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=1.3e+03 Score=30.63 Aligned_cols=195 Identities=19% Similarity=0.181 Sum_probs=101.3
Q ss_pred hccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhh---hHHHhhhhhhhhHHHHHHHHHHHHHHhccc
Q 000211 983 LKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQ---VVTEEFDRSKQTISELTEENRALMVALQDK 1059 (1852)
Q Consensus 983 ~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~---~v~~E~~~tK~~~~el~~En~al~~slqdK 1059 (1852)
.++.-|+--+|.++--.+-+.--++-.-|+.++-+|+-|+.|=...+ ...-|+-+--.+.-....|..|..-.+|-
T Consensus 48 ~~~~~e~~~N~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK~~~~m~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q- 126 (613)
T KOG0992|consen 48 DDVGGEGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQKEKTRVDMTNEILLESVRKAQTQKDIKCEEEAKIKNLQQ- 126 (613)
T ss_pred hhhhccccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444555555555555555555666667777777777766542221 22233333344444555555555555442
Q ss_pred hhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhh---hhhhhhhh----------HhhHHHHHHH
Q 000211 1060 SEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAK---HSQLLDFD----------QQKSELIQKT 1126 (1852)
Q Consensus 1060 ~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK---~~sL~sfd----------~enqeLl~~~ 1126 (1852)
-+++.|+.+++-+-.|.---+.++..-+..+.+|-++|... .+.+..+. ++--.++...
T Consensus 127 --------~~~d~l~~~~~fle~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~ 198 (613)
T KOG0992|consen 127 --------IEIDKLKNLLSFLEQEKVDREGLMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTT 198 (613)
T ss_pred --------HhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 25677777777664444333444444444555555555431 22222222 1222235555
Q ss_pred HhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhH
Q 000211 1127 AVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDIS 1186 (1852)
Q Consensus 1127 ~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dve 1186 (1852)
-...++++.+-.+.+.+.+..+--+|+...-+--++.+..+=.-+.-+.+.++-.+.+|+
T Consensus 199 ~a~~e~~nrh~~erlk~~~~s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~Ve 258 (613)
T KOG0992|consen 199 LAAVEEENRHLKERLKIVEESRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVE 258 (613)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567778888777777777766655554444333344444443334444555555555554
No 233
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=33.25 E-value=48 Score=33.24 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=31.0
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEE
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTV 137 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtI 137 (1852)
+..++|++.+++++... ..+....+||..-..| -||+.|
T Consensus 77 ~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~~~~g-~l~~~~ 115 (119)
T cd04036 77 MDDHLGTVLFDVSKLKL-GEKVRVTFSLNPQGKE-ELEVEF 115 (119)
T ss_pred CCcccEEEEEEHHHCCC-CCcEEEEEECCCCCCc-eEEEEE
Confidence 78899999999998765 5789999999876544 456654
No 234
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=32.22 E-value=1.1e+02 Score=31.54 Aligned_cols=106 Identities=14% Similarity=0.276 Sum_probs=59.2
Q ss_pred eeecccccccccceEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhhh--cCCCccc
Q 000211 22 FHATHIQQTGWDKLFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVA--MGSSRSS 99 (1852)
Q Consensus 22 FhAtqVp~~gwd~L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs--~GSsksg 99 (1852)
..|..+|..|.-.-||.|-=. |+..+||. |..| .+|++.-.-.... ..+..+ .+.|.|- ...++..
T Consensus 11 i~A~~L~~~~~~DPYv~v~l~--~~~~~kT~---v~~~----~nP~WnE~f~f~~-~~~~~~--~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 11 LEAHKLPVKHVPHPYCVISLN--EVKVARTK---VREG----PNPVWSEEFVFDD-LPPDVN--SFTISLSNKAKRSKDS 78 (126)
T ss_pred EEeeCCCCCCCCCeeEEEEEC--CEeEEEee---cCCC----CCCccCCEEEEec-CCCCcC--EEEEEEEECCCCCCCC
Confidence 457777776655555544322 22333332 3333 3566543322221 122111 2234441 2345889
Q ss_pred ccceeecchhhcccccCCeeeeecCCCCC-----CCCeEEEEEeee
Q 000211 100 ILGEATINLADYADASKPSTVLLPLHGGD-----SGTILHVTVQLL 140 (1852)
Q Consensus 100 iLGEasinlAdY~~a~kp~~VSLPLk~cn-----sGtvLHVtIQ~l 140 (1852)
++|++.|.++++.. ......-+||...+ .+.-||+.++..
T Consensus 79 ~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999999999876 45567788886653 236688888765
No 235
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.00 E-value=1.7e+02 Score=29.54 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 000211 1283 LDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQYEAWVEELVQQVYST 1356 (1852)
Q Consensus 1283 fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~S 1356 (1852)
||....|+..+|.+..|++.....|+-+-. .+...+.+| -....=+|.+||..|.-|+.+|..-
T Consensus 13 f~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~---~ir~~v~eL-------E~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 13 FENLSQEANSYKHQKDEYEHKINSQIQEMQ---QIRQKVYEL-------EQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555444332222 222222222 2233457899999999999998653
No 236
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=31.85 E-value=41 Score=33.57 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=23.6
Q ss_pred Ccccccceeecchhhccc--ccCCeeeeecCCCC
Q 000211 96 SRSSILGEATINLADYAD--ASKPSTVLLPLHGG 127 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~--a~kp~~VSLPLk~c 127 (1852)
++..+||.++|.+++... ......--+||...
T Consensus 77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 477899999999999874 23334556778766
No 237
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.82 E-value=4.3e+02 Score=33.03 Aligned_cols=78 Identities=31% Similarity=0.371 Sum_probs=57.6
Q ss_pred HHHHHHhhhccHHHHHHHHhhhhHHH----hhhhhhhhHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHhHHHh
Q 000211 1008 EVELQQLSSKNRDLAQEILALQVVTE----EFDRSKQTISELTEENRALMVALQD-------KSEESVKLALEVDSFKQS 1076 (1852)
Q Consensus 1008 e~elq~l~s~n~~l~~~i~~l~~v~~----E~~~tK~~~~el~~En~al~~slqd-------K~ees~~~~~El~slK~s 1076 (1852)
.+|.++|.+.|+.|.+++.-...|.. +.+++..+++-+.+||+.+-.+|++ |.|++-.+-+|+..--.-
T Consensus 98 q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~lay 177 (401)
T PF06785_consen 98 QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAY 177 (401)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 57889999999999999998887754 5566778899999999999888876 555666666666544444
Q ss_pred hHhhhHHHH
Q 000211 1077 FQSLHDELL 1085 (1852)
Q Consensus 1077 ~qSLhdEl~ 1085 (1852)
-|-|++|-+
T Consensus 178 qq~L~~eyQ 186 (401)
T PF06785_consen 178 QQELNDEYQ 186 (401)
T ss_pred HHHHHHHhh
Confidence 444444443
No 238
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.74 E-value=2.8e+02 Score=32.51 Aligned_cols=99 Identities=23% Similarity=0.246 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhh-hhhHHHHHHHHHhhhccHHHHhhhhhhhhh
Q 000211 1393 TSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHK-SQLALEVERMKQLLVGSEEEIDDLMMSREE 1471 (1852)
Q Consensus 1393 ~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eek-sk~a~Eve~lK~LL~~~eeeid~l~~~k~e 1471 (1852)
..+..++..+..+|+..|.+-..|+.+.+..+.+..+.+..+..-+|.= .+..-+...+...+.+.+.++..+.-+.+-
T Consensus 38 ~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~ 117 (225)
T COG1842 38 SELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEK 117 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777888888888888888877777777777666552 222223344445555555555555555555
Q ss_pred HHHHHHHHHHHHHhhhHHHh
Q 000211 1472 LEIKVVVLKAKLAEQHAQVI 1491 (1852)
Q Consensus 1472 ~ei~~~vlk~kl~e~~~~i~ 1491 (1852)
++-.+..|..|+.+.+++..
T Consensus 118 l~~~~~~Le~Ki~e~~~~~~ 137 (225)
T COG1842 118 LKKQLAALEQKIAELRAKKE 137 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 239
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=31.46 E-value=49 Score=33.62 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCC-----CCCCeEEEEEee
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPLHGG-----DSGTILHVTVQL 139 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~c-----nsGtvLHVtIQ~ 139 (1852)
+..+||++.|.++++..-..+.+.-+||.+- .+| -|||.|+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~l~~~~ 125 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIGLKVYI 125 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEEEEEEE
Confidence 7889999999999998445566777888542 244 78887763
No 240
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=31.42 E-value=90 Score=31.36 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=19.3
Q ss_pred CcccccceeecchhhcccccCCeeeeecC
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPL 124 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1852)
++..++|++.|++++.... ....--+||
T Consensus 99 ~~~~~iG~~~i~l~~l~~~-~~~~~W~~L 126 (127)
T cd04030 99 REKKLLGQVLIDLSDLDLS-KGFTQWYDL 126 (127)
T ss_pred CCCceEEEEEEeccccccc-CCccceEEC
Confidence 5789999999999996442 333434443
No 241
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=31.30 E-value=9.2e+02 Score=28.34 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=70.8
Q ss_pred HHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcc----cccchHHHHHHHH
Q 000211 1221 MVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL----DQQKSELVQLKLL 1296 (1852)
Q Consensus 1221 mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~f----d~~~~EL~~Lk~q 1296 (1852)
...|.|.-.+-++-..++..||+.|.....++..- +..+..|...+..+...+..+ ...++|...|+..
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~-------~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK-------ESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 34555655666677777777777666665555443 333333333333333333222 2344455555555
Q ss_pred HhhhHhhhhhhhhh---------------------------cccchhhhHHHHHHHhhhhh-----hhHHHHHHHH--H-
Q 000211 1297 VLDLESEKSRASEE---------------------------SSSVTSLQSELSEMHELLLA-----VDVRLIFTRT--Q- 1341 (1852)
Q Consensus 1297 v~DLese~S~~~~k---------------------------tsefk~Ls~hL~El~e~l~A-----~dvriiF~Ke--Q- 1341 (1852)
+..|+.+++..... ...+.+|..++-.|..-+.. +.-+..|.-+ .
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555444433211 11233343333333322221 3444445433 2
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhccHHHHH
Q 000211 1342 YEAWVEELVQQVYSTDRLLTELHTKNVDVETVL 1374 (1852)
Q Consensus 1342 YEtkvqEL~~QL~~Skk~~eElq~K~qDaedel 1374 (1852)
-+-|-.+|++|=..--.|. +|-+++++.+.+|
T Consensus 169 ~eEKekVi~YQkQLQ~nYv-qMy~rn~~LE~~l 200 (202)
T PF06818_consen 169 QEEKEKVIRYQKQLQQNYV-QMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 4556666776655444444 5667777666554
No 242
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.20 E-value=2.6e+02 Score=31.69 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=29.9
Q ss_pred hHHHHHhHHhh--hhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhH
Q 000211 311 SIHELKLEVSS--LQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHL 364 (1852)
Q Consensus 311 sIEkLKsE~~s--L~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~L 364 (1852)
++..|...+-. -.|+|+..+. -..|..|-..+= .+|-|+|+.-+.||--|
T Consensus 34 dVi~L~e~Ld~~L~~~~ar~~gI--cpvr~~ly~~~F--~ELIRQVTi~C~ERGlL 85 (189)
T PF10211_consen 34 DVIQLQEWLDKMLQQRQARETGI--CPVREELYSQCF--DELIRQVTIDCPERGLL 85 (189)
T ss_pred HHHHHHHHHHHHHHHhcCCcccc--cHHHHHHHHHHH--HHHHHHHHhCcHHHhHH
Confidence 44444444422 1466776654 445555544333 57888999988888765
No 243
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.89 E-value=1.9e+02 Score=29.11 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=36.0
Q ss_pred Hhh-chhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCch-HHhhhhhccc
Q 000211 343 EIA-SGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSW-EAVKQGTEIT 393 (1852)
Q Consensus 343 Esk-rgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~-eelkqel~~t 393 (1852)
|.| ..+.|+.|++.+..-|++|.+|-++||.-+. .| +.||.=+|+.
T Consensus 29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~-----~WQerlrsLLGkm 76 (79)
T COG3074 29 ELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN-----GWQERLRALLGKM 76 (79)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Confidence 444 3567999999999999999999999997654 46 4477777764
No 244
>PF14992 TMCO5: TMCO5 family
Probab=30.88 E-value=1.9e+02 Score=35.01 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=74.1
Q ss_pred hHHhhhhccccchhhhHHHhhhhhHHHHHHh---------hhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHH
Q 000211 767 NQLLESNLQDVTCENRHLTQKLSEWESLMMD---------FKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQ 837 (1852)
Q Consensus 767 nq~lea~lq~~~~en~~l~~k~~e~e~~v~e---------~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~ 837 (1852)
|--||-++|.++-.|.-|++||.+-|.-++. |..=++-=+-|+.+..+=+ | ..=-++++.|..+...+.
T Consensus 6 n~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~-l-~~le~e~~~LE~~ne~l~ 83 (280)
T PF14992_consen 6 NMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETD-L-QELELETAKLEKENEHLS 83 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHH-H-HHHHhhhHHHhhhhHhhh
Confidence 4457899999999999999999998876543 3333333334444333322 3 111133344433333331
Q ss_pred HHHHHhh----HhhhhhhhhhhhHHHHHHHHHHHHHHhhhhccc---cccccccccccccccccccCHHHHHHHHHHHHH
Q 000211 838 KELETVK----IDFDELASVNKNLQRTINNLQNKMHDMLSSYGE---SFSELCLHNKSADQNLESKDLTSVIMRLEVLQR 910 (1852)
Q Consensus 838 ~~~~~~k----~~~~~~~s~~~~lq~~~~~lq~kl~~~l~sy~~---~~~~l~l~~~s~~~dl~~~d~~~v~~~le~~q~ 910 (1852)
....... ..+.+..--...+-+.+.+.+++++.+..|+-. .|-. + ++ ||.. .-.+.-
T Consensus 84 ~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~k--v---------e~-d~~~----v~~l~e 147 (280)
T PF14992_consen 84 KSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAK--V---------ED-DYQQ----VHQLCE 147 (280)
T ss_pred hhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHH--H---------HH-HHHH----HHHHHH
Confidence 1112222 222222222334445555666666666554321 1111 0 00 3332 233445
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHh
Q 000211 911 NACQKIRQLMQEKKALIDEKDRA 933 (1852)
Q Consensus 911 ~~c~kil~l~~ek~~l~~e~d~~ 933 (1852)
++|+-|.-|.+--..+++++++.
T Consensus 148 Dq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 148 DQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777776666555555555554
No 245
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=30.79 E-value=46 Score=34.09 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=35.1
Q ss_pred hhhhhhhhc--CCCcccccceeecchhhcccccCCeeeeecCCCCC-----CCCeEEEEEe
Q 000211 85 KLYKFVVAM--GSSRSSILGEATINLADYADASKPSTVLLPLHGGD-----SGTILHVTVQ 138 (1852)
Q Consensus 85 kiYkfVVs~--GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn-----sGtvLHVtIQ 138 (1852)
+...|.|-- ..++..++|.+.|++++... ..+...-+||+.-. +|.| |+.+.
T Consensus 62 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i-~l~~~ 120 (121)
T cd08401 62 RHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKV-HLELR 120 (121)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEE-EEEEE
Confidence 455566532 34567899999999999875 44567788886421 4655 88764
No 246
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=30.78 E-value=1.1e+02 Score=32.33 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=55.4
Q ss_pred HHhHHHHHHhhhhhccchhhhH-HHHHHHHHhhhHHhhhh---hhhhhhhhhhhhhhhhHHHHHHHHhhhhhh
Q 000211 1569 EQCETKVQELKHHLSISKKHSE-EMLWKLQDAIDEIENRK---KSEAAHLKKNEELGVKILELEAELQSLISD 1637 (1852)
Q Consensus 1569 eqyetklqelk~qlsisKkhsE-eml~KLqdaide~e~rk---Kse~~~~K~~eEL~~kilElEaelq~~~sd 1637 (1852)
..|+.|.|++.+|+.+-|+|+- ...--|+.|+++|.+.= +-=..+..++.+...+|-|-++||+.+..+
T Consensus 20 ~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~ 92 (115)
T PF06476_consen 20 TGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK 92 (115)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999984 57888999999996532 222345667788889999999999887654
No 247
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.78 E-value=1.4e+03 Score=30.17 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=86.2
Q ss_pred HHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHh
Q 000211 1011 LQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSL 1090 (1852)
Q Consensus 1011 lq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl 1090 (1852)
...+.+.|+.|-+.|..-.. .-..+.+|.+.-|++.. .+.+.-+=++.+|+--++--+-+......
T Consensus 273 i~~lk~~n~~l~e~i~ea~k-------~s~~i~~l~ek~r~l~~-------D~nk~~~~~~~mk~K~~~~~g~l~kl~~e 338 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMK-------ISQKIKTLREKWRALKS-------DSNKYENYVNAMKQKSQEWPGKLEKLKSE 338 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456778888777764332 23355666666665532 34556666677777777777777777777
Q ss_pred hhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-Hhhhhhhhhhhhh
Q 000211 1091 RDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELH 1169 (1852)
Q Consensus 1091 ~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q-~e~~lqeL~~eL~ 1169 (1852)
-+.+++.+..|-++-|++|.++-..+---.+ ++.|...-+.--.-.-..+.+++++.+-+++..- ..+.+.+|..-++
T Consensus 339 ie~kEeei~~L~~~~d~L~~q~~kq~Is~e~-fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 339 IELKEEEIKALQSNIDELHKQLRKQGISTEQ-FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887543321111 3333332222222223345666666666544332 3444455544444
Q ss_pred ccccchH
Q 000211 1170 GERSLSD 1176 (1852)
Q Consensus 1170 ~~~~~~e 1176 (1852)
....+..
T Consensus 418 ~~~sl~~ 424 (622)
T COG5185 418 QYDSLIQ 424 (622)
T ss_pred HHHHHHH
Confidence 4443333
No 248
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.77 E-value=1.2e+03 Score=31.60 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=52.6
Q ss_pred ccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchh----HHHHHHHHHHhHHHh
Q 000211 1001 FSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQDKSE----ESVKLALEVDSFKQS 1076 (1852)
Q Consensus 1001 ~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~e----es~~~~~El~slK~s 1076 (1852)
+.+|+++..+...|+.+-+.|+.+|.++...- +.|...=++++..++.+.- .--.+..||+.++..
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q----------e~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQ----------EKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999998899998877765543 4566666677777766443 335566777777776
Q ss_pred hHhhhHHHHHHH
Q 000211 1077 FQSLHDELLVER 1088 (1852)
Q Consensus 1077 ~qSLhdEl~aer 1088 (1852)
++.+..-+...+
T Consensus 648 l~~l~~si~~lk 659 (717)
T PF10168_consen 648 LQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHH
Confidence 666554444433
No 249
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.62 E-value=3.1e+02 Score=28.29 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=50.8
Q ss_pred chhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHH-----HHHhccchhHHHHHHHHHHhHHHhh
Q 000211 1003 DLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL-----MVALQDKSEESVKLALEVDSFKQSF 1077 (1852)
Q Consensus 1003 ~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al-----~~slqdK~ees~~~~~El~slK~s~ 1077 (1852)
.+..+..+++.+.+ .+..|.+--.|+..+..++..|.+..+-. |.-.+|+.+.-..+...++.+...+
T Consensus 11 ~~q~~q~~~~~l~~-------q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 11 QLQQLQQQLQAVAT-------QKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444 44444444444444444444443222211 2224899998888888888887777
Q ss_pred HhhhHHHHHHHHhhhhhHhhHhhh
Q 000211 1078 QSLHDELLVERSLRDDLKSAVSDI 1101 (1852)
Q Consensus 1078 qSLhdEl~aersl~edl~~~vsdL 1101 (1852)
..+.......+.-..++++.+-.+
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666655555555544433
No 250
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.54 E-value=1.5e+03 Score=30.69 Aligned_cols=149 Identities=22% Similarity=0.242 Sum_probs=87.7
Q ss_pred HhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhh
Q 000211 1194 QQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1852)
Q Consensus 1194 ~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skL 1273 (1852)
..-.+.....++|.+.+.....+=-.++..+.+.---+.+.----..|++.|.++...+..+|-=+++--....++..|+
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666666666554222211111228999999999999999888876655555555544
Q ss_pred hhhhh-----------hhhcc-cccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHHhhhhhhhHHHHHHHHH
Q 000211 1274 NEKHC-----------QLLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMHELLLAVDVRLIFTRTQ 1341 (1852)
Q Consensus 1274 dEk~~-----------qL~~f-d~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~e~l~A~dvriiF~KeQ 1341 (1852)
...-. -+.++ |.+.-+|..|+..+.+|..+++.-..+--+|. +++|.++.-=++-+.-+-++
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~------~~I~~l~~~Lg~~~~~~vt~ 207 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELK------EEIKSLCSVLGLDFSMTVTD 207 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhCCCcccchhh
Confidence 33322 22223 66778899999999999998886544444333 34444444334444444455
Q ss_pred HHHHHHH
Q 000211 1342 YEAWVEE 1348 (1852)
Q Consensus 1342 YEtkvqE 1348 (1852)
|+--+-.
T Consensus 208 ~~~sL~~ 214 (660)
T KOG4302|consen 208 VEPSLVD 214 (660)
T ss_pred hhhhhhh
Confidence 5544443
No 251
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=30.43 E-value=59 Score=35.03 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=34.4
Q ss_pred cccccceeecchhhcccccCCeeeeecC-----CCCCCCCeEEEEEee
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPL-----HGGDSGTILHVTVQL 139 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPL-----k~cnsGtvLHVtIQ~ 139 (1852)
+..++|.++|.+++... ..+....+|| +.+..|+-|||.+|.
T Consensus 111 ~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 111 GAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred CCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 35799999999999875 5577788898 455678999999985
No 252
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.16 E-value=1e+03 Score=28.55 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred hcccccchHHHHHHHHHhhhHhhhhhhhhhccc---------------------chhhhHHHHHHHhhhhhhhHHHHHHH
Q 000211 1281 LDLDQQKSELVQLKLLVLDLESEKSRASEESSS---------------------VTSLQSELSEMHELLLAVDVRLIFTR 1339 (1852)
Q Consensus 1281 ~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktse---------------------fk~Ls~hL~El~e~l~A~dvriiF~K 1339 (1852)
++......++..++.++.-+...+.+..-.... |..-...+..-...+.+.--.+.-..
T Consensus 74 ld~~~~~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 153 (423)
T TIGR01843 74 LDATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQI 153 (423)
T ss_pred EccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhh
Q 000211 1340 TQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSL 1419 (1852)
Q Consensus 1340 eQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~ 1419 (1852)
.+++..++.+..++...+.-+...+..+.-....++....+...+. .....+..+++++.++-++...+-...+.+
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~----~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 229 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL----ELERERAEAQGELGRLEAELEVLKRQIDEL 229 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred hhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhh
Q 000211 1420 IAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMM 1467 (1852)
Q Consensus 1420 ~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~ 1467 (1852)
.+++...+...-......-.. ...++..++.-+...+..+++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~---~~~~l~~~~~~l~~~~~~l~~~~i 274 (423)
T TIGR01843 230 QLERQQIEQTFREEVLEELTE---AQARLAELRERLNKARDRLQRLII 274 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcEE
No 253
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=29.62 E-value=73 Score=34.19 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=36.2
Q ss_pred CCCcccccceeecchhhccc---ccCCeeeeecCCCC----------CCCCeEEEEEeeec
Q 000211 94 GSSRSSILGEATINLADYAD---ASKPSTVLLPLHGG----------DSGTILHVTVQLLT 141 (1852)
Q Consensus 94 GSsksgiLGEasinlAdY~~---a~kp~~VSLPLk~c----------nsGtvLHVtIQ~l~ 141 (1852)
+.++..+||.+.|++.++.. ...+...-+||.+. .++.-|||.|+.-+
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 45578999999999999864 33556677898764 34588999988763
No 254
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.40 E-value=8.6e+02 Score=33.00 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=60.9
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD 538 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee 538 (1852)
..|+..+-....+|..++.+|+.|....+-|+--||....+-|. ....++++-+-...++.-.+..|-.+..-=+.
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~----L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~ 643 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK----LMKRVDRVLQLLNSQLPVLSEAEREFKKELER 643 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 66778888888888899999999988888888888877665322 22344444333345566666666665555556
Q ss_pred HHHHHHHHhhhHhHH
Q 000211 539 VDEQVLRFSEERRDL 553 (1852)
Q Consensus 539 l~~Q~~rF~edl~al 553 (1852)
|+.|+..+..-++.+
T Consensus 644 ~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 644 MKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666555554
No 255
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.34 E-value=1.5e+03 Score=30.19 Aligned_cols=191 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh
Q 000211 1077 FQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS 1156 (1852)
Q Consensus 1077 ~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q 1156 (1852)
++..+...+..+.-.+++.......+-+++-+..++ ..+++.+--.-+-..+.++..++
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~---------------~Ele~~~l~~gE~e~L~~e~~rL------ 217 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQL---------------EELEELNLQPGEDEELEEERKRL------ 217 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhcCCCCchHHHHHHHHHHH------
Q ss_pred HhhhhhhhhhhhhccccchHHHHhhhhhhHHHHH------HHHHhh---hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHh
Q 000211 1157 VRNSLQSVHDELHGERSLSDELKSRAIDISSQLN------EKQQQL---IDFDQQNSEMIQKIAELTSENQALMVSLQEY 1227 (1852)
Q Consensus 1157 ~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln------~~~~~e---~e~~~enSeL~~~~~~L~~en~a~mv~L~d~ 1227 (1852)
...+.|.....++..+|+ .-++.- .+-....++....+..+.+.=.+-+.+|++-
T Consensus 218 ----------------sn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea 281 (557)
T COG0497 218 ----------------SNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEA 281 (557)
T ss_pred ----------------hhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhh
Q 000211 1228 AEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEK 1304 (1852)
Q Consensus 1228 kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~ 1304 (1852)
..+-.++++++.-=-..|.-.++-|..++.+...--.++.++...++....+|.+++....-+..|++++..+..+.
T Consensus 282 ~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~ 358 (557)
T COG0497 282 SEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAEL 358 (557)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
No 256
>PF13514 AAA_27: AAA domain
Probab=29.33 E-value=1.8e+03 Score=31.13 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=60.2
Q ss_pred hhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcc--cchhhhHHHHHHHHHhhHhh
Q 000211 770 LESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENG--NLRRETSLLQKELETVKIDF 847 (1852)
Q Consensus 770 lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~--~l~~e~~~~~~~~~~~k~~~ 847 (1852)
|++.|..+..-..+--.-...|+.+..+....+........+...+..-+..=.+... ...++|..|.+..-.++.--
T Consensus 223 l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~ 302 (1111)
T PF13514_consen 223 LEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKAR 302 (1111)
T ss_pred HHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444444433333334456677777777777777777776666666554444333322 34567777777777777777
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHh
Q 000211 848 DELASVNKNLQRTINNLQNKMHDM 871 (1852)
Q Consensus 848 ~~~~s~~~~lq~~~~~lq~kl~~~ 871 (1852)
.++..+...+.....-+...+..+
T Consensus 303 ~dl~~~~~e~~~~~~~~~~~~~~l 326 (1111)
T PF13514_consen 303 QDLPRLEAELAELEAELRALLAQL 326 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777766666666555555554443
No 257
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=29.31 E-value=1e+02 Score=34.99 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=30.0
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhc--hhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIAS--GEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskr--gqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
+|+++.|=.-+.-=+-+|+....|+..+|-+|+=++-+ .+=+.-|+.+.+.|...|+.+|+.|.
T Consensus 60 Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~ 125 (181)
T PF04645_consen 60 EDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQ 125 (181)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555444443 34444444455555555554444443
No 258
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=29.19 E-value=44 Score=33.92 Aligned_cols=103 Identities=12% Similarity=0.202 Sum_probs=56.0
Q ss_pred eeecccccccccc-----eEEEEeecCCCccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhh-hc-C
Q 000211 22 FHATHIQQTGWDK-----LFISFIPADSGKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVV-AM-G 94 (1852)
Q Consensus 22 FhAtqVp~~gwd~-----L~vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVV-s~-G 94 (1852)
+.|.++|..++.. ..|.+-|....+...||. ..-.+-++.|...++=.+.. +. .+....|.| .. .
T Consensus 20 ~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~-v~~~~~~P~wne~f~~~~~~------~~-~~~~l~v~v~d~~~ 91 (131)
T cd04026 20 REAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTK-TIKKTLNPVWNETFTFDLKP------AD-KDRRLSIEVWDWDR 91 (131)
T ss_pred EEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecce-eecCCCCCCccceEEEeCCc------hh-cCCEEEEEEEECCC
Confidence 5677777544332 223333322223444443 32334456666554433221 11 122333333 22 2
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCCCCCeEE
Q 000211 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGDSGTILH 134 (1852)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLH 134 (1852)
..+..++|.+.+++++.... +..--.||.+-.+|.+-.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~~~~~~~ 129 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQEEGEYYN 129 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC--ccCceEECcCcccccccc
Confidence 23778999999999999864 667778988888887644
No 259
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.59 E-value=58 Score=34.41 Aligned_cols=38 Identities=42% Similarity=0.581 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHH
Q 000211 998 TDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL 1052 (1852)
Q Consensus 998 ~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al 1052 (1852)
.++|..|+.||.++..+ ..+++.+|.-+.+|.+||.+|
T Consensus 4 ~elfd~l~~le~~l~~l-----------------~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 4 KEIFDALDDLEQNLGVL-----------------LKELGALKKQLAELLEENTAL 41 (110)
T ss_pred hHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
No 260
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.44 E-value=2e+03 Score=31.30 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHH
Q 000211 898 LTSVIMRLEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFE 977 (1852)
Q Consensus 898 ~~~v~~~le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e 977 (1852)
+-..|..++.--....++.--...||+...+++..|+.+..--+-....-+..|=+-+...-....-.+.-|-++..++.
T Consensus 165 lK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~ 244 (1141)
T KOG0018|consen 165 LKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIP 244 (1141)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhH
Confidence 44566777777777778888888888888888888888776666665555555555555555555555555555666655
Q ss_pred HHhhhhccchHHHHhHhhhhhccccchhHH
Q 000211 978 AVADKLKVSSEVEENNAQRHTDLFSDLDYL 1007 (1852)
Q Consensus 978 ~~~~k~k~~se~ee~y~~~~~~l~s~l~~~ 1007 (1852)
.+..++.---..-+.+-.-++...-.+..+
T Consensus 245 ~~~~~~d~~e~ei~~~k~e~~ki~re~~~~ 274 (1141)
T KOG0018|consen 245 KLKERMDKKEREIRVRKKERGKIRRELQKV 274 (1141)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555433333333333333333333333
No 261
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.17 E-value=59 Score=34.05 Aligned_cols=38 Identities=47% Similarity=0.660 Sum_probs=0.0
Q ss_pred hccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHH
Q 000211 998 TDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRAL 1052 (1852)
Q Consensus 998 ~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al 1052 (1852)
.+||..|+.||.+|+.+ ..+++.+|..+.+|.+||.+|
T Consensus 4 ~~l~~~l~~le~~l~~l-----------------~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQL-----------------LEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
No 262
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=27.48 E-value=1.2e+02 Score=30.40 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCCcccccceeecchhhcccccCCeeeeecCC
Q 000211 94 GSSRSSILGEATINLADYADASKPSTVLLPLH 125 (1852)
Q Consensus 94 GSsksgiLGEasinlAdY~~a~kp~~VSLPLk 125 (1852)
+.++..++|++.|.+++.... ....+-+||.
T Consensus 92 ~~~~~~~iG~~~i~L~~l~~~-~~~~~w~~L~ 122 (123)
T cd08390 92 RFSRHCIIGHVLFPLKDLDLV-KGGVVWRDLE 122 (123)
T ss_pred cCCCCcEEEEEEEeccceecC-CCceEEEeCC
Confidence 334779999999999987663 3445667764
No 263
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=27.46 E-value=1.4e+02 Score=38.84 Aligned_cols=291 Identities=18% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccc--cchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHH
Q 000211 967 ALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLF--SDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISE 1044 (1852)
Q Consensus 967 ~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~--s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~e 1044 (1852)
+-+..|+..++.|...++.....=..|.....+++ ..|+.|..+|+.|..+=..-.+++..+-... .....+
T Consensus 105 ~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I------~~l~~~ 178 (619)
T PF03999_consen 105 QEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRELREEI------ISLMEE 178 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 34455666677777777654443345566667777 4777777777776554433333332222111 111122
Q ss_pred HHHHHH-----HHHHHhccchhHHHHHHH-HHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHh
Q 000211 1045 LTEENR-----ALMVALQDKSEESVKLAL-EVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQ 1118 (1852)
Q Consensus 1045 l~~En~-----al~~slqdK~ees~~~~~-El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~e 1118 (1852)
|...-. ..+.+.. -.+.+..|.. =|+.|+.-++.|.++...-+.-.+++..++..|=..|+.-....+.|-..
T Consensus 179 L~~~~~~~~~e~~l~~~~-~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~ 257 (619)
T PF03999_consen 179 LGIDPERTSFEKDLLSYS-EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEE 257 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCCCcccccchhhccccc-cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhc
Confidence 221111 1111111 1222333322 23344444333333333333333444444555555555444444445344
Q ss_pred hHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhh
Q 000211 1119 KSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLID 1198 (1852)
Q Consensus 1119 nqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e 1198 (1852)
+.-+-....+.++.+-. +|..++-+..+.. ....|.-|++|=+.++-.......+.--+.|.-+ =.-.-.+|.+
T Consensus 258 ~~~ls~~~i~~l~~El~---RL~~lK~~~lk~~--I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-E~lL~~hE~E 331 (619)
T PF03999_consen 258 NSGLSLDTIEALEEELE---RLEELKKQNLKEF--IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-EELLELHEEE 331 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcchHHHHHHHHHHHH---HHHHHHHHhHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-HHHHHHHHHH
Confidence 44332222222222111 1111111111111 1125566666666666555444444333333322 0012233444
Q ss_pred hhhhhhHHHHHHHHH-----hhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhh
Q 000211 1199 FDQQNSEMIQKIAEL-----TSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1852)
Q Consensus 1199 ~~~enSeL~~~~~~L-----~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skL 1273 (1852)
+............-| ...-..-+.+|+++..+.+++..=+-+ | |++| ..-+.+...|=..+..|+..|
T Consensus 332 i~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~----L--LkEE-k~rk~i~k~lPkle~~L~~~l 404 (619)
T PF03999_consen 332 IERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLNNRGGH----L--LKEE-KERKRIQKKLPKLEEELKKKL 404 (619)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG----------H--HHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccH----H--HHHH-HHHHHHHHHhhHHHHHHHHHH
Confidence 444444444444443 344556677888888766666644422 2 3333 334444555666666777766
Q ss_pred hhhh
Q 000211 1274 NEKH 1277 (1852)
Q Consensus 1274 dEk~ 1277 (1852)
.+-+
T Consensus 405 ~~wE 408 (619)
T PF03999_consen 405 EEWE 408 (619)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 264
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.38 E-value=3.5e+02 Score=33.05 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=50.4
Q ss_pred hhhhhhhchhhH-------HHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000211 301 LRGCLEMAESSI-------HELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIK 373 (1852)
Q Consensus 301 ~Re~Le~AEdsI-------EkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1852)
+|..|-..|+.+ -.|-.|-.+|.=+.|.+.-.|..+-..++-=-+--.+..+++--+|..+|.|+.|+..||.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666643 3467777888888888888777666655533333346677777777777777777777765
Q ss_pred hh
Q 000211 374 LR 375 (1852)
Q Consensus 374 ~k 375 (1852)
.-
T Consensus 162 ~L 163 (302)
T PF09738_consen 162 QL 163 (302)
T ss_pred HH
Confidence 44
No 265
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.36 E-value=3.5e+02 Score=29.11 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=40.4
Q ss_pred hhccHHHHHHHHhhhhHHHhh-------hhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhh
Q 000211 1015 SSKNRDLAQEILALQVVTEEF-------DRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLH 1081 (1852)
Q Consensus 1015 ~s~n~~l~~~i~~l~~v~~E~-------~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLh 1081 (1852)
...-..+.+||..|-.-..++ ..++.-+++|...-.+++.-+--|+|+---|-.-|.++|.-+...-
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666554444433 4445555666666667777777777777777777777777665543
No 266
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.96 E-value=1.5e+03 Score=29.32 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=84.2
Q ss_pred hhHhhhhhhhhhhhhh--------hhhhhH-hhHHH----HHHHH-hhhHhhhhhHHhhhhhhHHHHHHHHHHHhHhhhh
Q 000211 1096 SAVSDITSQLSAKHSQ--------LLDFDQ-QKSEL----IQKTA-VLTKENQDLMVSLQNKSEEAAKLAVELDSVRNSL 1161 (1852)
Q Consensus 1096 ~~vsdLaSEL~eK~~s--------L~sfd~-enqeL----l~~~~-~dlEea~sl~~~Lls~sEe~~k~A~t~~q~e~~l 1161 (1852)
+.-..||-.|+...++ +.+.++ .+... +..+. ...+.-..+.-.+-.+...-..++-+...++..+
T Consensus 112 ~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~ 191 (420)
T COG4942 112 EQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLL 191 (420)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666665 455544 22222 33332 4455556666666666666667778888888888
Q ss_pred hhhhhhhhccccchHHHHhhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHHHh
Q 000211 1162 QSVHDELHGERSLSDELKSRAIDISSQLNEKQQQLIDFDQQNSEMIQKIAELT 1214 (1852)
Q Consensus 1162 qeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~ 1214 (1852)
-+...+...+...+.+=+++..++.+.|...+.+..+..-..++|...|.++.
T Consensus 192 ~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 192 SEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888877774
No 267
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.82 E-value=4.6e+02 Score=30.43 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHh
Q 000211 1065 KLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKE 1132 (1852)
Q Consensus 1065 ~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEe 1132 (1852)
++.-|-..|...++.+..+......-.+.++..++++-.++..+..++.+...-+++| |..|++.++.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555566666667777777777777777777777776 7788877765
No 268
>PLN03188 kinesin-12 family protein; Provisional
Probab=26.63 E-value=2.2e+03 Score=31.36 Aligned_cols=79 Identities=22% Similarity=0.165 Sum_probs=40.7
Q ss_pred HhhHHHHHhhhhh-hhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh-------hhhcccchhhhHHHHHHHhhhhh--
Q 000211 1261 ELKNVVTDLTSQL-NEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA-------SEESSSVTSLQSELSEMHELLLA-- 1330 (1852)
Q Consensus 1261 eLE~tV~~L~skL-dEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~-------~~ktsefk~Ls~hL~El~e~l~A-- 1330 (1852)
+.|++-+-|+..| .|.+.-.+-.+..+.||..=|.-.-+|.-++.+. ++---+..-..++|-++|-....
T Consensus 1058 e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi 1137 (1320)
T PLN03188 1058 EAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGI 1137 (1320)
T ss_pred HHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666554 2333333334556666666666666666665544 23333333445555555544444
Q ss_pred hhHHHHHHH
Q 000211 1331 VDVRLIFTR 1339 (1852)
Q Consensus 1331 ~dvriiF~K 1339 (1852)
+||+-+-.|
T Consensus 1138 ~dvkkaaak 1146 (1320)
T PLN03188 1138 DDVKKAAAR 1146 (1320)
T ss_pred HHHHHHHHH
Confidence 555544444
No 269
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.57 E-value=1.7e+03 Score=30.02 Aligned_cols=305 Identities=23% Similarity=0.280 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHH----------HHHH------HhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHh
Q 000211 1184 DISSQLNEKQQQLIDFDQQNSEMIQ----------KIAE------LTSENQALMVSLQEYAEESSRLASEGNTSKETLQS 1247 (1852)
Q Consensus 1184 Dves~Ln~~~~~e~e~~~enSeL~~----------~~~~------L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~S 1247 (1852)
+++.+..+.-..|..|..-.-.|.. ...- ...+|..+...|.++-.+ ..+...++..++.
T Consensus 74 EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~e----l~~~k~qq~~v~~ 149 (629)
T KOG0963|consen 74 EIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNE----LADLKTQQVTVRN 149 (629)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH----HhhhhhhHHHHHh
Confidence 4555556666666666655544321 1111 123455555555555444 3344444455555
Q ss_pred HHHHHHHhhhhHHHh-h----HHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHH
Q 000211 1248 LRDELQSERSLRDEL-K----NVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELS 1322 (1852)
Q Consensus 1248 l~eEL~~ersLreeL-E----~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~ 1322 (1852)
+.+.+..+..+.+.- + +|-.-+--+..+.+. .-+.+...++.++..++...+.++-.- ..-..+|.
T Consensus 150 l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~------~L~~~~~~~~~q~~~le~ki~~lq~a~---~~t~~el~ 220 (629)
T KOG0963|consen 150 LKERLRKLEQLLEIFIENAANETEEKLEQEWAEREA------GLKDEEQNLQEQLEELEKKISSLQSAI---EDTQNELF 220 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhHHH
Confidence 555444444433321 1 222222222222222 224455666666666666666543111 12334444
Q ss_pred HHHhh------hhhhhHHHHH-----H--H-HHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHH
Q 000211 1323 EMHEL------LLAVDVRLIF-----T--R-TQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEEN 1388 (1852)
Q Consensus 1323 El~e~------l~A~dvriiF-----~--K-eQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keN 1388 (1852)
+++.. +.++-|-+|. + + .+-|..++.|.+|+.. .+|....- ..|-++.++--+-. --.+|
T Consensus 221 ~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~-~N~~~~~~--~~~~i~~~~~~L~~---kd~~i 294 (629)
T KOG0963|consen 221 DLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK-ANSSKKLA--KIDDIDALGSVLNQ---KDSEI 294 (629)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhc--cCCchHHHHHHHhH---HHHHH
Confidence 44433 2223333221 1 1 2357889999999853 34433322 33333333332222 45567
Q ss_pred HHHHHhHHHHHHHHHH-------HHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhc-cHH
Q 000211 1389 ARLLTSLDTLRSELDS-------AIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVG-SEE 1460 (1852)
Q Consensus 1389 aeL~~~I~eLesELea-------siaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~-~ee 1460 (1852)
++|.+.|..+++-+.- .|+.--...++++ .++|+-+.++++. -+| -.|..||--||.+=++ +++
T Consensus 295 ~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~---~~leel~~kL~~~-sDY----eeIK~ELsiLk~ief~~se~ 366 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVEEREKHKAQISALEKELKAKI---SELEELKEKLNSR-SDY----EEIKKELSILKAIEFGDSEE 366 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh-ccH----HHHHHHHHHHHHhhcCCccc
Confidence 7777777766654433 3333333344444 5666666555554 223 3478899999999998 444
Q ss_pred HHhh-hhhhhhhHHHHHHHHHHHHHhhhHHH-hccccchhHHHHHHHHhHHHHHHHHHH
Q 000211 1461 EIDD-LMMSREELEIKVVVLKAKLAEQHAQV-ISSEGYIDEQKMLQNQCNELRRKLSEQ 1517 (1852)
Q Consensus 1461 eid~-l~~~k~e~ei~~~vlk~kl~e~~~~i-~~~~~~~~el~~l~~~~~eltqklseq 1517 (1852)
--|+ =+.+. +|...+-=..+|...-|+. +..-+-.++++.++..-.+++++-++|
T Consensus 367 a~~~~~~~~~--leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ 423 (629)
T KOG0963|consen 367 ANDEDETAKT--LESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQ 423 (629)
T ss_pred ccccccccch--HHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHH
Confidence 3333 11111 1222222223444444443 222233337777777777777777665
No 270
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=26.46 E-value=1.3e+02 Score=30.26 Aligned_cols=97 Identities=19% Similarity=0.208 Sum_probs=52.1
Q ss_pred EEEeeeecccccccccc-----eEEEEeecCCCcc--ccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhh
Q 000211 18 FRLQFHATHIQQTGWDK-----LFISFIPADSGKA--IGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFV 90 (1852)
Q Consensus 18 FklqFhAtqVp~~gwd~-----L~vSiVp~D~GK~--taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfV 90 (1852)
+.|+..|.++|...|.. ..|.+.+...|+. ..||+ ..-.+-+-.|...++=.+ ..+... ..+|.
T Consensus 3 ~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~-vi~~t~nP~wne~f~f~~---~~~~~~-----~l~~~ 73 (120)
T cd04048 3 VELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTE-VIKNNLNPDFVTTFTVDY---YFEEVQ-----KLRFE 73 (120)
T ss_pred EEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEe-EeCCCCCCCceEEEEEEE---EeEeee-----EEEEE
Confidence 56788888888766643 2344444432222 22222 222333445655443221 111111 22233
Q ss_pred h---hc---CCCcccccceeecchhhcccccCCeeeeecC
Q 000211 91 V---AM---GSSRSSILGEATINLADYADASKPSTVLLPL 124 (1852)
Q Consensus 91 V---s~---GSsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1852)
| -+ +.++..++|++.+++++.+.. ....+.+||
T Consensus 74 V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~-~~~~~~~~l 112 (120)
T cd04048 74 VYDVDSKSKDLSDHDFLGEAECTLGEIVSS-PGQKLTLPL 112 (120)
T ss_pred EEEecCCcCCCCCCcEEEEEEEEHHHHhcC-CCcEEEEEc
Confidence 3 12 146788999999999999863 456677887
No 271
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=26.30 E-value=1.6e+02 Score=29.00 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=48.4
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 310 SSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 310 dsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
++|++||.+++-|.|.|-...|+|..|..-+=.=-.+--+++...-....+-+.+|+++..+.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999965544333333456677777888888888888776543
No 272
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.17 E-value=5e+02 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=26.8
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQ 498 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQ 498 (1852)
+.++.-+--+.+|+-.||..+++++.++.+=-..-..+++
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~ 46 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQ 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777777665555555555
No 273
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=26.12 E-value=1.5e+03 Score=29.13 Aligned_cols=234 Identities=19% Similarity=0.155 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhh
Q 000211 919 LMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHT 998 (1852)
Q Consensus 919 l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~ 998 (1852)
|.+|..+|.---++-+....+-++++....-+|..|.--...--.-+-|-|+ +-+-+.--
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaME--------------------etHQkkiE 355 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAME--------------------ETHQKKIE 355 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHH--------------------HHHHHHHH
Confidence 4455556666666777777888999999999998886433322222222222 11111111
Q ss_pred ccccchhHHHHHHHHhhhc-cHHHHHH----HHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHH-HHHHHHHh
Q 000211 999 DLFSDLDYLEVELQQLSSK-NRDLAQE----ILALQVVTEEFDRSKQTISELTEENRALMVALQDKSEESV-KLALEVDS 1072 (1852)
Q Consensus 999 ~l~s~l~~~e~elq~l~s~-n~~l~~~----i~~l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~-~~~~El~s 1072 (1852)
||- .+-+.||+.|.-+ .+=||+| |.+|.+. |-+-.|=++..=.-..|++.--+.-- .+..|
T Consensus 356 dLQ---RqHqRELekLreEKdrLLAEETAATiSAIEAM-------KnAhrEEmeRELeKsqSvnsdveaLRrQylee--- 422 (593)
T KOG4807|consen 356 DLQ---RQHQRELEKLREEKDRLLAEETAATISAIEAM-------KNAHREEMERELEKSQSVNSDVEALRRQYLEE--- 422 (593)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH-------HHHHHHHHHHHHHhhhccccChHHHHHHHHHH---
Confidence 110 1234566655543 3334443 3444332 22222211111111113333322222 12233
Q ss_pred HHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHH----
Q 000211 1073 FKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAA---- 1148 (1852)
Q Consensus 1073 lK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~---- 1148 (1852)
+||+++||.++-----.|==..+-|+-++..-...|--+..+||+|..- -.|..+.++-+...++.=+.
T Consensus 423 ----lqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaH---NQELnnRLaaEItrLRtlltgdGg 495 (593)
T KOG4807|consen 423 ----LQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAH---NQELNNRLAAEITRLRTLLTGDGG 495 (593)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHhhHHHHHHHHHHHHhccCCC
Confidence 5566666665433322333345778888888888888888999998543 23556666666666665443
Q ss_pred ---------HHH-----------HHHHhHhhhhhhhhhhhhccccchHHHHhhhhhhHHHHHHH
Q 000211 1149 ---------KLA-----------VELDSVRNSLQSVHDELHGERSLSDELKSRAIDISSQLNEK 1192 (1852)
Q Consensus 1149 ---------k~A-----------~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dves~Ln~~ 1192 (1852)
++| .++-+++.-|.+|.++|+---++.-+-..|+.|+-+.|-+-
T Consensus 496 GtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSia 559 (593)
T KOG4807|consen 496 GTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIA 559 (593)
T ss_pred CCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Confidence 222 67778999999999999999999999999999998777653
No 274
>smart00338 BRLZ basic region leucin zipper.
Probab=26.10 E-value=1.6e+02 Score=27.52 Aligned_cols=40 Identities=35% Similarity=0.467 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1852)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1852)
++.|.+|-.++..+..+.+.|..++++|...+..|++.+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888888887653
No 275
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.89 E-value=1.4e+03 Score=28.57 Aligned_cols=242 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHHHHHHHHHHh-HhhhhhhhhhhhhccccchHHH-Hhhhh
Q 000211 1106 SAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEAAKLAVELDS-VRNSLQSVHDELHGERSLSDEL-KSRAI 1183 (1852)
Q Consensus 1106 ~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~~k~A~t~~q-~e~~lqeL~~eL~~~~~~~e~L-Qsk~~ 1183 (1852)
......+-++.+++-.|-......-...+.+..++-.++...+..+...-+ =+---+-|--.|+++-+..+.| +....
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHhhhhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhh
Q 000211 1184 DISSQLNEKQQQLIDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELK 1263 (1852)
Q Consensus 1184 Dves~Ln~~~~~e~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE 1263 (1852)
+=+.+-|..+-+..+.-.+..+|...++ +-.-.-|++|..-|..+..+......--+.|-
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le--------------------~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr 162 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLE--------------------QEQEYLVNKLQKKIERLEKEKSAKQEELERLR 162 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhh--------------------hhhcccchhhhHHHHH
Q 000211 1264 NVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRA--------------------SEESSSVTSLQSELSE 1323 (1852)
Q Consensus 1264 ~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~--------------------~~ktsefk~Ls~hL~E 1323 (1852)
..-.+|...|.--+..| +.+|.++...|+.++-.. ...+.....+.+|+..
T Consensus 163 ~EKVdlEn~LE~EQE~l---------vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~ 233 (310)
T PF09755_consen 163 REKVDLENTLEQEQEAL---------VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRS 233 (310)
T ss_pred HHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHH
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 000211 1324 MHELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELD 1403 (1852)
Q Consensus 1324 l~e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELe 1403 (1852)
+++-+.---=.+++...++-.+.+-..+- |.+.-++|.+|..+|.---...+
T Consensus 234 Lr~EV~RLR~qL~~sq~e~~~k~~~~~~e----------------------------ek~ireEN~rLqr~L~~E~erre 285 (310)
T PF09755_consen 234 LRQEVSRLRQQLAASQQEHSEKMAQYLQE----------------------------EKEIREENRRLQRKLQREVERRE 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 000211 1404 S 1404 (1852)
Q Consensus 1404 a 1404 (1852)
|
T Consensus 286 a 286 (310)
T PF09755_consen 286 A 286 (310)
T ss_pred H
No 276
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=25.71 E-value=1.3e+03 Score=28.15 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=86.1
Q ss_pred hhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhh
Q 000211 1028 LQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSA 1107 (1852)
Q Consensus 1028 l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~e 1107 (1852)
-+...++...+...+++|+..|...++... +.+..+..++.++...++.+.+.+-......+.......+..... .
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~---~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r-~ 91 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNA---ECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEER-K 91 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344455555666677888889988888764 455777888888888888888887766666666665555444441 1
Q ss_pred hhhhhhhhhHhhHHHHHHHHhhhHhhhhh--HHhhhhhhHHHHHHHHHHHhHhhhhhhhhhhhhccccchHHHHhhhhhh
Q 000211 1108 KHSQLLDFDQQKSELIQKTAVLTKENQDL--MVSLQNKSEEAAKLAVELDSVRNSLQSVHDELHGERSLSDELKSRAIDI 1185 (1852)
Q Consensus 1108 K~~sL~sfd~enqeLl~~~~~dlEea~sl--~~~Lls~sEe~~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk~~Dv 1185 (1852)
+-..+.+.+++..+++ |--.+ .|-.+.++++...+ -++++.|..+- ....-+++...++
T Consensus 92 ~~~~~l~~~~~l~diL--------ElP~Lm~~ci~~g~y~eALel-------~~~~~~L~~~~----~~~~lv~~i~~ev 152 (338)
T PF04124_consen 92 KASLLLENHDRLLDIL--------ELPQLMDTCIRNGNYSEALEL-------SAHVRRLQSRF----PNIPLVKSIAQEV 152 (338)
T ss_pred HHHHHHHHHHHHHHHH--------hhHHHHHHHHhcccHhhHHHH-------HHHHHHHHHhc----cCchhHHHHHHHH
Confidence 1122222223333221 11111 23333344433322 33344333333 3366677777777
Q ss_pred HHHHHHHHHhhhhhhhhhhHH
Q 000211 1186 SSQLNEKQQQLIDFDQQNSEM 1206 (1852)
Q Consensus 1186 es~Ln~~~~~e~e~~~enSeL 1206 (1852)
+..+..-+.+.+.--..+=.|
T Consensus 153 ~~~~~~ml~~Li~~L~~~l~l 173 (338)
T PF04124_consen 153 EAALQQMLSQLINQLRTPLKL 173 (338)
T ss_pred HHHHHHHHHHHHHHHcCcccH
Confidence 776666666655544444333
No 277
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=25.55 E-value=9.8e+02 Score=32.06 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhh
Q 000211 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLARE 1381 (1852)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksE 1381 (1852)
..|.-+|+..+-+.+.+....-+..-++.+.++..++.+++..++..++..
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446677888888888888888888888888888888888888888877643
No 278
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=25.06 E-value=90 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=20.6
Q ss_pred CCcccccceeecchhhcccccCCeeeeecC
Q 000211 95 SSRSSILGEATINLADYADASKPSTVLLPL 124 (1852)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1852)
.++..++|++.|.++++.. ..+.+.=.||
T Consensus 95 ~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred CcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 4577899999999998764 4444444444
No 279
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.00 E-value=9.9e+02 Score=26.64 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHhhhhHHHhhHHHHHhhhhhhhhhhhh
Q 000211 1252 LQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1852)
Q Consensus 1252 L~~ersLreeLE~tV~~L~skLdEk~~qL 1280 (1852)
+..-..+|.+++...-.+++.+.+.+..+
T Consensus 39 ~~~~~vtk~d~e~~~~~~~a~~~eLr~el 67 (177)
T PF07798_consen 39 VAQDLVTKSDLENQEYLFKAAIAELRSEL 67 (177)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556655555555555555555
No 280
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=24.98 E-value=1.8e+02 Score=31.12 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccccceeecchhhccccc--CCeeeeecCC
Q 000211 98 SSILGEATINLADYADAS--KPSTVLLPLH 125 (1852)
Q Consensus 98 sgiLGEasinlAdY~~a~--kp~~VSLPLk 125 (1852)
..+||.+.|+++++.... ....++.||.
T Consensus 91 ~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 91 RRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred CceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 479999999999998653 3367778884
No 281
>PLN02939 transferase, transferring glycosyl groups
Probab=24.71 E-value=2.2e+03 Score=30.59 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=88.9
Q ss_pred cccccCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHhhHHhhhhhhhc
Q 000211 892 NLESKDLTSVIMR-------LEVLQRNACQKIRQLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEHDLRNMIDKQSV 964 (1852)
Q Consensus 892 dl~~~d~~~v~~~-------le~~q~~~c~kil~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~ 964 (1852)
+++-.|+.|.|.. |....-++-+.+-..+.||++|..+-++++++++.+...+..-.| .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---- 192 (977)
T PLN02939 127 DFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ----------E---- 192 (977)
T ss_pred cccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh----------c----
Confidence 4556788876543 444455566666667789999999999999988766443322222 1
Q ss_pred cHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHH
Q 000211 965 SNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISE 1044 (1852)
Q Consensus 965 s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~e 1044 (1852)
+..++-|...+|.+.+-+-+....+- +..--|-.||--|..+|.-|-+-|-.|.+-..+...|-.-+.-
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (977)
T PLN02939 193 -KIHVEILEEQLEKLRNELLIRGATEG----------LCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFK 261 (977)
T ss_pred -cccchhhHHHHHHHhhhhhccccccc----------cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 11222233333333333322211111 1222355688889999999999999998888888888888888
Q ss_pred HHHHHHHHHHHhcc
Q 000211 1045 LTEENRALMVALQD 1058 (1852)
Q Consensus 1045 l~~En~al~~slqd 1058 (1852)
|.+|---|-+|+++
T Consensus 262 ~~~~~~~~~~~~~~ 275 (977)
T PLN02939 262 LEKERSLLDASLRE 275 (977)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887666666654
No 282
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=24.70 E-value=50 Score=33.27 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred hhhhhhhhh-hc-CCCcccccceeecchhhcccccCCeeeeecCC
Q 000211 83 DEKLYKFVV-AM-GSSRSSILGEATINLADYADASKPSTVLLPLH 125 (1852)
Q Consensus 83 ~ekiYkfVV-s~-GSsksgiLGEasinlAdY~~a~kp~~VSLPLk 125 (1852)
.++...|.| .- ..++..++|++.|++++..... +.+.-+||+
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 344444554 22 3457899999999999987544 666667765
No 283
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=24.67 E-value=9.1e+02 Score=26.10 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=48.9
Q ss_pred hhhhcccchhhHHHHHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHH
Q 000211 933 AEMSFSKSESDIVLVKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQ 1012 (1852)
Q Consensus 933 ~~~~~~~aes~~~~~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq 1012 (1852)
++.+...|-..+-.+.+... ++...+..|.-.-.-+...=.-+..|+.+.++-+===-==|-+-|+.=.+|+-...|+.
T Consensus 7 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir 85 (213)
T PF00015_consen 7 AQEANEEAVEEMEEIQESIE-EIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIR 85 (213)
T ss_dssp HHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHH
Confidence 33444444334444433333 23333333333333344444455556655443221111113455677778888888888
Q ss_pred HhhhccHHHHHHHHhh
Q 000211 1013 QLSSKNRDLAQEILAL 1028 (1852)
Q Consensus 1013 ~l~s~n~~l~~~i~~l 1028 (1852)
.|..+=.+.+.+|..+
T Consensus 86 ~LA~~t~~~~~~I~~~ 101 (213)
T PF00015_consen 86 KLAEQTSESAKEISEI 101 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhHHHHHHHH
Confidence 8888877777777653
No 284
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.27 E-value=7.7e+02 Score=29.93 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=59.4
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD 538 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee 538 (1852)
..+.+.|-.+...|+....|-..|+.+|+.- ++|||.+|+.. .-+|+.|== .-.+-+++|.|
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekk-------k~ELER~qKRL-~sLq~vRPA----------fmdEyEklE~E 233 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKK-------KQELERNQKRL-QSLQSVRPA----------FMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHhcChH----------HHHHHHHHHHH
Confidence 4556666666666777777777777777654 55566655521 124444411 12345788888
Q ss_pred HHHHHHHHhhhHhHHHhhhHHHHHhhhhH
Q 000211 539 VDEQVLRFSEERRDLESLNKELERRAVSA 567 (1852)
Q Consensus 539 l~~Q~~rF~edl~al~~~kvEqEqRAI~A 567 (1852)
|+++-..|.+-.+-++-+..+.|.+.-+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~~~~e 262 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEYNRRE 262 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888888887777765443
No 285
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=24.26 E-value=7.2e+02 Score=27.09 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=34.1
Q ss_pred hhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc
Q 000211 1454 LLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE 1494 (1852)
Q Consensus 1454 LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~ 1494 (1852)
.....+-+.|||++-=..++=|+-.+|.+|.++=-.|+.=+
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE 118 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDE 118 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCc
Confidence 33466789999999999999999999999999876665544
No 286
>PF14992 TMCO5: TMCO5 family
Probab=24.18 E-value=7.8e+02 Score=30.14 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=85.3
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhhHHH---
Q 000211 957 NMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQVVTE--- 1033 (1852)
Q Consensus 957 ~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~v~~--- 1033 (1852)
.+..|++.-+.-+|.|..++-.+.|..+=+ -+++|-.- +-=-+|-.||-+---|.-+|+.+++-|-+|..-..
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~--e~e~~~~~--~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~ 97 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRS--EEEDIISE--ERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQE 97 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCch--hHHhhhhh--chHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcccc
Confidence 467788888999999999999998877655 22333331 11123455666666677777777776666655432
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHHhccchhHHHHH--------------HHHHHhHHHhhHhhhHHHHHHHHhhhhh
Q 000211 1034 -----EFDRSKQTISELTEENRALMVALQDKSEESVKL--------------ALEVDSFKQSFQSLHDELLVERSLRDDL 1094 (1852)
Q Consensus 1034 -----E~~~tK~~~~el~~En~al~~slqdK~ees~~~--------------~~El~slK~s~qSLhdEl~aersl~edl 1094 (1852)
|=.-++..+++....=|-+..+.-....+..++ +.++.-+|+-++-..+ +.++.+.+.+
T Consensus 98 ~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~--ekE~~lLe~e 175 (280)
T PF14992_consen 98 TNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE--EKEMLLLEKE 175 (280)
T ss_pred CCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333344455555544444555544444444444 5667777777766555 6666666666
Q ss_pred HhhHhhhhhh
Q 000211 1095 KSAVSDITSQ 1104 (1852)
Q Consensus 1095 ~~~vsdLaSE 1104 (1852)
-+.+-...|+
T Consensus 176 l~k~q~~~s~ 185 (280)
T PF14992_consen 176 LSKYQMQDSQ 185 (280)
T ss_pred HHHHhchhhc
Confidence 5554444443
No 287
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=24.15 E-value=1.5e+03 Score=28.46 Aligned_cols=203 Identities=20% Similarity=0.204 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHH-HHHHHHHhHHHHHHHHHHHHHh-
Q 000211 1331 VDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNE-ENARLLTSLDTLRSELDSAIAE- 1408 (1852)
Q Consensus 1331 ~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~k-eNaeL~~~I~eLesELeasiae- 1408 (1852)
..+...|...+-+....-.+........-++++..+.+.++..+........-... +..-+..... ++++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~---~~ln~ql~~~ 251 (458)
T COG3206 175 NALAQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQL---SALNTQLQSA 251 (458)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHH---HHHHHHHHHH
Confidence 44566777777777777777777888888888888888888777776655443331 2222211111 111111111
Q ss_pred hHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhH
Q 000211 1409 NRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHA 1488 (1852)
Q Consensus 1409 kR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~ 1488 (1852)
.+....++.........-..-.......+.- -++-+..|+.-..+..-+|.++...=.+.--..+.+++.+.+.+.
T Consensus 252 ~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~----~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~ 327 (458)
T COG3206 252 RARLAQAEARLASLLQLLPLGREAAALREVL----ESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQ 327 (458)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhHHh----ccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHH
Confidence 0111111111111000000001001111111 122455555555555556666655555555666777777777766
Q ss_pred HHh-----ccccchhHHHHHHHHhHHHHHHHHHHHhhhhhhcchhhhhHHhhhhhhH
Q 000211 1489 QVI-----SSEGYIDEQKMLQNQCNELRRKLSEQILKTEEFRNLSIHLKELKDKADA 1540 (1852)
Q Consensus 1489 ~i~-----~~~~~~~el~~l~~~~~eltqklseqilkteefknlsihlkelkdkaea 1540 (1852)
+|. .+..+..++..++.+-+.|.++++.=--.-..+-..-.-+.+|.-.|++
T Consensus 328 ~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~ 384 (458)
T COG3206 328 QIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEA 384 (458)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHH
Confidence 662 2356666777888888888888776666666677777778888888877
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.00 E-value=1.9e+02 Score=32.77 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=44.0
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhcCCCCchHHhhh
Q 000211 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSCHPFTSWEAVKQ 388 (1852)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~~~~a~~eelkq 388 (1852)
...+++|+.++..+......+...++..+ .=..++-..+.+..++..|+.++..|+.|++.++. .+...++.+++
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~----~Dp~~i~~~~~ 142 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKELKKELEKYSE----NDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHH
Confidence 33455555555555544444444444442 22233344556788888888888888888884433 23334566666
Q ss_pred hhc
Q 000211 389 GTE 391 (1852)
Q Consensus 389 el~ 391 (1852)
++.
T Consensus 143 ~~~ 145 (188)
T PF03962_consen 143 EIK 145 (188)
T ss_pred HHH
Confidence 543
No 289
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.78 E-value=3.1e+02 Score=32.34 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccc-----hhHHHHHHHHhHHHHHHHHHHHhh
Q 000211 1446 LEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGY-----IDEQKMLQNQCNELRRKLSEQILK 1520 (1852)
Q Consensus 1446 ~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~-----~~el~~l~~~~~eltqklseqilk 1520 (1852)
-=+.-+-.++-.+=+.|-+.+++|++.++.+..+++.++-.+.++-|++.+ -.|-..|++....+.+.|-++|=|
T Consensus 66 TIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~ 145 (220)
T KOG3156|consen 66 TITSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISK 145 (220)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335567778888899999999999999999999999999999999998765 356667777777888899999877
Q ss_pred h-hhhc
Q 000211 1521 T-EEFR 1525 (1852)
Q Consensus 1521 t-eefk 1525 (1852)
+ -|||
T Consensus 146 ~~a~~r 151 (220)
T KOG3156|consen 146 TTAEFR 151 (220)
T ss_pred cchhce
Confidence 4 4554
No 290
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.67 E-value=2.4e+02 Score=28.00 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHH
Q 000211 350 LAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 350 LsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
|-.+..+|..|+..|+.|.++||
T Consensus 30 Lke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 30 LKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555
No 291
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.60 E-value=1.3e+03 Score=28.99 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=47.9
Q ss_pred HHHHHHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhhccHHHHHHHH
Q 000211 947 VKQKFEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSSKNRDLAQEIL 1026 (1852)
Q Consensus 947 ~kqk~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~ 1026 (1852)
-.+.+...+..+-..+..-..-++.++.-.+.+....+..++. .|......+.+.++.++.+...-..++..+++-..
T Consensus 166 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T TIGR01000 166 QNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFN--PYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQ 243 (457)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc--cHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555555555555555566666666666666665555554 34433446666666666654433333333333333
Q ss_pred hhhhHHHhhhhhhhhHHH
Q 000211 1027 ALQVVTEEFDRSKQTISE 1044 (1852)
Q Consensus 1027 ~l~~v~~E~~~tK~~~~e 1044 (1852)
.++....++...+..+++
T Consensus 244 ~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 244 QIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333333344444333333
No 292
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.43 E-value=1.5e+02 Score=38.70 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=42.2
Q ss_pred CchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000211 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHM 507 (1852)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~ 507 (1852)
|.-.++-|=-+|.+||+.|...-|+|..-+.|-.++-+.||-+.||.|.|.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 556677788888888888888888888888888888888888888877754
No 293
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=23.40 E-value=1e+03 Score=32.39 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=21.7
Q ss_pred cccchhhhhccccchhcchhhhhhhhhhcCCCcccccceeec
Q 000211 65 DPIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATI 106 (1852)
Q Consensus 65 dpiyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasi 106 (1852)
+|-+-.++-......+.+.+.+.+++-..+ -..+|.+..|
T Consensus 150 S~eL~~iR~~~~~~~~~i~~~l~~~~~~~~--~~~~L~d~~i 189 (782)
T PRK00409 150 SEKLRGIRRQLRRKKSRIREKLESIIRSKS--LQKYLQDTII 189 (782)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccccccceE
Confidence 344444444444455566667777766544 2355655555
No 294
>PRK10698 phage shock protein PspA; Provisional
Probab=23.11 E-value=6.3e+02 Score=29.36 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=41.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhh
Q 000211 1390 RLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEH 1440 (1852)
Q Consensus 1390 eL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Ee 1440 (1852)
++...|..++..+..+++..+.+-..++...+..+....+.+..+..-.|+
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed 85 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED 85 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 345556667888999999999999999999999998888888888776666
No 295
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.08 E-value=2.6e+02 Score=29.55 Aligned_cols=44 Identities=34% Similarity=0.487 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHH
Q 000211 1004 LDYLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTE 1047 (1852)
Q Consensus 1004 l~~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~ 1047 (1852)
|.++-.+++.+...=..|.+.|..|.+...|+..++.++..|..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556667777777778888888899999999999999988875
No 296
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.81 E-value=1.4e+03 Score=31.52 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=67.8
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccc----------cchhHHHHHHHHhhhccHHHHHHHHh
Q 000211 958 MIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLF----------SDLDYLEVELQQLSSKNRDLAQEILA 1027 (1852)
Q Consensus 958 m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~----------s~l~~~e~elq~l~s~n~~l~~~i~~ 1027 (1852)
+-+|.-.-+.-|.-++..+.-- +|...--|+|-+.+|++.+++ -++-+|+.++|++.-+=.+..+...-
T Consensus 110 ~eekn~slqerLelaE~~l~qs-~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreem 188 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQS-LRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKM 188 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhH-HhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344433333333333333322 224444566666665555543 35556666666555444444443321
Q ss_pred hhhHHHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhh
Q 000211 1028 LQVVTEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDI 1101 (1852)
Q Consensus 1028 l~~v~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdL 1101 (1852)
=.....=+-+|-. .-|..-.+..|++++||+ .|-.|++++|+-+.-+.-.....+.--++|-+.+.+|
T Consensus 189 neeh~~rlsdtvd--ErlqlhlkermaAle~kn----~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 189 NEEHNKRLSDTVD--ERLQLHLKERMAALEDKN----RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred hhhhccccccccH--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111111111111 345556677899999987 5778888888876554444444443334444444433
No 297
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.75 E-value=1.5e+03 Score=27.81 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=17.7
Q ss_pred chHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 000211 1174 LSDELKSRAIDISSQLNEKQQQLIDFDQ 1201 (1852)
Q Consensus 1174 ~~e~LQsk~~Dves~Ln~~~~~e~e~~~ 1201 (1852)
....+.....++..+|+.|.++=.+|-+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~ 230 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQD 230 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777666555543
No 298
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.48 E-value=1.2e+03 Score=30.35 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=100.3
Q ss_pred HHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHH
Q 000211 1242 KETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSEL 1321 (1852)
Q Consensus 1242 k~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL 1321 (1852)
..+|.-+.+.|++.|.=...+...-.+|..+|+|- -+|+....+++-+.++. ++.+|..+|
T Consensus 258 Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea--------------~rl~elreg~e~e~~rk-----elE~lR~~L 318 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEA--------------PRLSELREGVENETSRK-----ELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhh--------------hhhhhhhcchhHHHHHH-----HHHHHHHHH
Confidence 45666667778887777777777777777777744 44555555555555542 344555555
Q ss_pred HHHHhhhhhh-----------hHHHHHHH--HHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHH
Q 000211 1322 SEMHELLLAV-----------DVRLIFTR--TQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEEN 1388 (1852)
Q Consensus 1322 ~El~e~l~A~-----------dvriiF~K--eQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keN 1388 (1852)
++...-+++- =|+..+.- .+|+.+-|.---||-+-+.-.+.++||--.+-..+-.-..+= -
T Consensus 319 ~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss------l 392 (575)
T KOG4403|consen 319 EKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS------L 392 (575)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc------h
Confidence 5555444442 23333332 357888888888899988889999999877766654433322 2
Q ss_pred HHHHHhHHHHHHHHHHHHHhhHhhhhchhh
Q 000211 1389 ARLLTSLDTLRSELDSAIAENRVLFHENNS 1418 (1852)
Q Consensus 1389 aeL~~~I~eLesELeasiaekR~L~nand~ 1418 (1852)
...--+|.+.++-|..+....|+..++.--
T Consensus 393 DdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 393 DDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234468999999999999999998888753
No 299
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=22.32 E-value=51 Score=34.32 Aligned_cols=68 Identities=25% Similarity=0.499 Sum_probs=37.8
Q ss_pred EEEeecCCCccccccccccccCCcccCCcccchhh-hhccccchhcchhhhhhhhh-hcC-CCcccccceeecchhhcc
Q 000211 37 ISFIPADSGKAIGKTTKANVRNGTCKWADPIYETT-RLLQDIKTKQYDEKLYKFVV-AMG-SSRSSILGEATINLADYA 112 (1852)
Q Consensus 37 vSiVp~D~GK~taKt~Ka~Vr~G~C~W~dpiyEtv-kl~qD~kt~~~~ekiYkfVV-s~G-SsksgiLGEasinlAdY~ 112 (1852)
|++.|... +.. ..|+.|..++| +|+|.-+ .|. ..-.+.+.+...|-| ..| .++..+||++.|.|+++.
T Consensus 43 v~llp~~~-~~~--k~kT~v~~~t~---nPvfNE~F~f~--v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 43 VCLLPDKS-HNS--KRKTAVKKGTV---NPVFNETLKYV--VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred EEEEeCCc-ccc--eeecccccCCC---CCccceEEEEE--cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 34556542 221 23555777776 4444322 221 222334444455555 344 368889999999999983
No 300
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.17 E-value=1.5e+03 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhH
Q 000211 1038 SKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQ 1078 (1852)
Q Consensus 1038 tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~q 1078 (1852)
.+.-+.++..+-..+....-+++.....+-.+++.++..+.
T Consensus 259 l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 259 LKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566677666666667777666654
No 301
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.97 E-value=3.3e+02 Score=31.11 Aligned_cols=70 Identities=27% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 303 GCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 303 e~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
+.....+..|++-.++...++.....++..+-.|+.+...=-+--+.-.+||+.++.++++++++|+..+
T Consensus 110 e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 110 EERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 302
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=21.95 E-value=1.5e+02 Score=31.23 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=39.8
Q ss_pred CCcccCCcccchhhhhccccc-------hhcchhhhhhhhh-hc-CCCcccccceeecchhhcccccCCeeeeecCCCC
Q 000211 58 NGTCKWADPIYETTRLLQDIK-------TKQYDEKLYKFVV-AM-GSSRSSILGEATINLADYADASKPSTVLLPLHGG 127 (1852)
Q Consensus 58 ~G~C~W~dpiyEtvkl~qD~k-------t~~~~ekiYkfVV-s~-GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~c 127 (1852)
+-...|...++=.+....+.+ +..+......|.| .- +..+..++|++.|.+.+... ..+...-+||...
T Consensus 44 t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 44 TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 335567665554444432211 1122333444444 22 33589999999999999874 4566777788544
No 303
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=21.79 E-value=1.5e+03 Score=28.30 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhh
Q 000211 1214 TSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNE 1275 (1852)
Q Consensus 1214 ~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdE 1275 (1852)
-++|+-+| -+.-.-++++-+.+++-+|+.-|.-.+.-...+--|++.++.++-+|..-|-.
T Consensus 101 KD~nDkvM-PVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 101 KDENDKVM-PVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred cccCCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44454444 23333388899999999999999999999999999999999888888765543
No 304
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=21.57 E-value=63 Score=32.88 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=40.6
Q ss_pred CccccccccccccCCcccCCcccchhhhhccccchhcchhhhhhhhhhcCCCcccccceeecchhhcccccCCeeeeecC
Q 000211 45 GKAIGKTTKANVRNGTCKWADPIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATINLADYADASKPSTVLLPL 124 (1852)
Q Consensus 45 GK~taKt~Ka~Vr~G~C~W~dpiyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasinlAdY~~a~kp~~VSLPL 124 (1852)
|....||. ..-.+-+..|..+++=.+. + ...+.=.+|+.- .+|.....+||.+.|++.+......+..-.+||
T Consensus 31 ~~~~~kT~-v~~~t~nP~Wne~f~~~~~----~-~~~l~i~V~d~~-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l 103 (123)
T cd08382 31 GGQTHSTD-VAKKTLDPKWNEHFDLTVG----P-SSIITIQVFDQK-KFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDL 103 (123)
T ss_pred CccceEcc-EEcCCCCCcccceEEEEeC----C-CCEEEEEEEECC-CCCCCCCceEeEEEEEHHHccccCCCccceeEe
Confidence 45555553 2223446778766654442 1 112222222210 123323579999999999998776665556777
Q ss_pred C
Q 000211 125 H 125 (1852)
Q Consensus 125 k 125 (1852)
+
T Consensus 104 ~ 104 (123)
T cd08382 104 R 104 (123)
T ss_pred e
Confidence 3
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.37 E-value=6.9e+02 Score=32.39 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=14.1
Q ss_pred HHHHHHhhhHHHhcc-ccchhHHHHHHHHhHHHHH
Q 000211 1479 LKAKLAEQHAQVISS-EGYIDEQKMLQNQCNELRR 1512 (1852)
Q Consensus 1479 lk~kl~e~~~~i~~~-~~~~~el~~l~~~~~eltq 1512 (1852)
.+.||.++..+-... ....-.+.-|++|.++|.=
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 344444444433222 2222233445555555543
No 306
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=4.1e+02 Score=35.35 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=34.5
Q ss_pred hhhhhhhchhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHh
Q 000211 301 LRGCLEMAESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECS 362 (1852)
Q Consensus 301 ~Re~Le~AEdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD 362 (1852)
-|+-|-+|=.+...+|.-+...+|.+-..++-.+.. -|...+=+|..|+.=|+..++++.
T Consensus 343 ~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~--rika~VIrG~~l~eal~~~~e~~~ 402 (652)
T COG2433 343 ERDALAAAYKAYLAYKPKLEKVERKLPELGIWKDVE--RIKALVIRGYPLAEALSKVKEEER 402 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH--HHHHHeecCCcHHHHHHHHHhhhc
Confidence 455566666666666666666666666555544422 233344466666666666665554
No 307
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.75 E-value=1.1e+03 Score=32.29 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=30.5
Q ss_pred ccchhhhhccccchhcchhhhhhhhhhcCCCcccccceeecchhhcccccCCeeeeecCCCC
Q 000211 66 PIYETTRLLQDIKTKQYDEKLYKFVVAMGSSRSSILGEATINLADYADASKPSTVLLPLHGG 127 (1852)
Q Consensus 66 piyEtvkl~qD~kt~~~~ekiYkfVVs~GSsksgiLGEasinlAdY~~a~kp~~VSLPLk~c 127 (1852)
|-+-.++---....+.+.+++.+++-..| ..++|++..|.+-+. ...+|++..
T Consensus 146 ~~L~~ir~~~~~~~~~i~~~l~~~~~~~~--~~~~l~~~~it~r~~-------r~vipvk~~ 198 (771)
T TIGR01069 146 EELDAIRESLKALEEEVVKRLHKIIRSKE--LAKYLSDTIVTIRNG-------RYVLPLKSG 198 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhhcCceEEEECC-------EEEEEeeHH
Confidence 44444444444556677788888877665 346777744443321 345777653
No 308
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.58 E-value=1.4e+03 Score=26.59 Aligned_cols=132 Identities=11% Similarity=0.157 Sum_probs=70.3
Q ss_pred CCCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHH
Q 000211 455 VNPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEA 534 (1852)
Q Consensus 455 a~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~ 534 (1852)
..+.+++..-...+..|.+..=..+..+...|..+.-.-..+..++....+........++....+++..+...+..-..
T Consensus 52 ~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~ 131 (239)
T cd07647 52 GDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQ 131 (239)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888777765433222333344434433444555555555555555555544444
Q ss_pred HHHHHHHHHHHHhhhHhHHHhhh-HHHHHhhhhHHHHHHHHhhhhhHHHHHHH
Q 000211 535 MRLDVDEQVLRFSEERRDLESLN-KELERRAVSAEAALKRARLNYSIAVNQLQ 586 (1852)
Q Consensus 535 Leeel~~Q~~rF~edl~al~~~k-vEqEqRAI~AEeALRKtRwnnA~aaerLQ 586 (1852)
.=.+++.-...+..-...++... .-.+.++-.|..+.-+++=.|..+++.|+
T Consensus 132 ~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~ 184 (239)
T cd07647 132 KCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLE 184 (239)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43344332222211111111100 11344555666666667777777755554
No 309
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=20.52 E-value=4.4e+02 Score=30.34 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=36.3
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHH
Q 000211 319 VSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERL 371 (1852)
Q Consensus 319 ~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqL 371 (1852)
+++.-.-+..++.++..|+++|.++.++ ++-.++.+|+.|.|.+++|||-.
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e~~ 157 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKEREIR 157 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344455667777788888888777665 45667888888888888888754
No 310
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.31 E-value=1.3e+03 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhh
Q 000211 1342 YEAWVEELVQQVYSTDRLLTELHTKN 1367 (1852)
Q Consensus 1342 YEtkvqEL~~QL~~Skk~~eElq~K~ 1367 (1852)
|-.|+.||--|+++.+.--..|+.+.
T Consensus 64 y~~~F~ELIRQVTi~C~ERGlLL~rv 89 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDCPERGLLLLRV 89 (189)
T ss_pred HHHHHHHHHHHHHhCcHHHhHHHHHH
Confidence 99999999999999887777766664
Done!