Query 000211
Match_columns 1852
No_of_seqs 65 out of 67
Neff 3.0
Searched_HMMs 29240
Date Tue Mar 26 01:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.6 0.08 2.7E-06 54.5 29.6 12 1005-1016 9-20 (284)
2 1i84_S Smooth muscle myosin he 97.4 0.0002 6.7E-09 93.0 8.7 57 1061-1117 913-969 (1184)
3 1i84_S Smooth muscle myosin he 97.2 0.00061 2.1E-08 88.5 10.1 16 900-915 778-793 (1184)
4 3ol1_A Vimentin; structural ge 89.0 7.5 0.00026 39.2 14.2 97 459-555 16-115 (119)
5 3na7_A HP0958; flagellar bioge 87.1 13 0.00044 41.2 16.0 85 1437-1521 88-180 (256)
6 3swk_A Vimentin; cytoskeleton, 85.6 5.3 0.00018 38.5 10.5 76 465-540 2-80 (86)
7 2v71_A Nuclear distribution pr 85.2 12 0.00042 40.8 14.2 162 1247-1440 7-169 (189)
8 3na7_A HP0958; flagellar bioge 82.2 35 0.0012 37.7 16.6 53 456-508 32-84 (256)
9 3ol1_A Vimentin; structural ge 80.1 4.6 0.00016 40.7 8.0 83 1393-1486 20-102 (119)
10 2dfs_A Myosin-5A; myosin-V, in 79.9 9.9 0.00034 50.1 13.1 15 729-743 517-531 (1080)
11 3tnu_A Keratin, type I cytoske 79.2 18 0.0006 36.8 12.0 72 456-548 38-109 (131)
12 3o0z_A RHO-associated protein 78.3 24 0.00082 38.0 13.0 110 1032-1141 26-142 (168)
13 3tnu_B Keratin, type II cytosk 77.7 19 0.00064 36.5 11.6 71 457-548 37-107 (129)
14 3s4r_A Vimentin; alpha-helix, 77.5 2.6 8.8E-05 41.1 5.1 84 745-847 10-93 (93)
15 3o0z_A RHO-associated protein 74.8 58 0.002 35.2 14.8 140 1358-1508 13-153 (168)
16 2v71_A Nuclear distribution pr 73.7 1.1E+02 0.0038 33.5 17.4 59 522-584 87-145 (189)
17 3swk_A Vimentin; cytoskeleton, 72.8 7.9 0.00027 37.3 7.1 81 1395-1486 2-82 (86)
18 2ocy_A RAB guanine nucleotide 70.1 51 0.0017 35.1 12.9 118 1006-1123 17-142 (154)
19 3vkg_A Dynein heavy chain, cyt 69.6 73 0.0025 46.7 18.1 71 1072-1142 2011-2084(3245)
20 2dfs_A Myosin-5A; myosin-V, in 67.6 29 0.001 45.8 12.9 52 994-1045 920-972 (1080)
21 1gk4_A Vimentin; intermediate 63.4 52 0.0018 31.3 10.5 59 471-550 2-60 (84)
22 1go4_E MAD1 (mitotic arrest de 60.8 24 0.00081 35.4 7.8 36 456-491 12-47 (100)
23 3s84_A Apolipoprotein A-IV; fo 59.5 2.4E+02 0.008 32.0 20.3 39 1419-1460 214-252 (273)
24 2v4h_A NF-kappa-B essential mo 58.5 1E+02 0.0034 31.5 11.9 52 471-537 25-76 (110)
25 2v66_B Nuclear distribution pr 58.3 1.1E+02 0.0039 31.0 12.3 86 481-584 7-92 (111)
26 2efr_A General control protein 56.0 1.3E+02 0.0045 32.0 12.9 66 951-1016 26-91 (155)
27 2fxo_A Myosin heavy chain, car 55.9 1.7E+02 0.0059 29.6 13.4 112 1383-1515 10-121 (129)
28 1ugk_A Synaptotagmin IV, KIAA1 55.2 29 0.00098 33.7 7.4 34 95-128 102-135 (138)
29 2ocy_A RAB guanine nucleotide 54.2 93 0.0032 33.2 11.4 53 1232-1286 47-99 (154)
30 3hnw_A Uncharacterized protein 54.0 84 0.0029 32.6 10.9 40 460-499 79-118 (138)
31 3ghg_A Fibrinogen alpha chain; 52.2 40 0.0014 41.6 9.4 125 781-908 59-188 (562)
32 2fxo_A Myosin heavy chain, car 48.7 2E+02 0.0067 29.2 12.5 26 1251-1276 98-123 (129)
33 3i00_A HIP-I, huntingtin-inter 48.3 41 0.0014 34.4 7.4 58 311-372 16-74 (120)
34 3ghg_A Fibrinogen alpha chain; 47.9 73 0.0025 39.5 10.6 71 468-546 62-133 (562)
35 3oja_B Anopheles plasmodium-re 46.8 83 0.0028 37.6 11.0 48 1037-1084 513-560 (597)
36 1rlw_A Phospholipase A2, CALB 45.0 33 0.0011 32.5 6.0 42 97-140 83-124 (126)
37 3s84_A Apolipoprotein A-IV; fo 42.9 4.2E+02 0.014 30.1 21.1 15 1444-1458 130-144 (273)
38 2w83_C C-JUN-amino-terminal ki 42.5 27 0.00094 33.6 4.8 26 477-502 30-55 (77)
39 3vkg_A Dynein heavy chain, cyt 41.5 6.4E+02 0.022 37.7 19.9 31 1096-1126 1660-1699(3245)
40 2e7s_A RAB guanine nucleotide 41.5 27 0.00092 36.6 5.0 62 1062-1123 68-130 (135)
41 2v66_B Nuclear distribution pr 40.4 66 0.0022 32.8 7.4 76 792-877 13-88 (111)
42 3tnu_A Keratin, type I cytoske 40.3 46 0.0016 33.8 6.5 77 1233-1328 35-111 (131)
43 3csx_A Putative uncharacterize 39.7 28 0.00097 33.8 4.5 65 309-373 14-78 (81)
44 1wfj_A Putative elicitor-respo 38.9 16 0.00055 35.2 2.8 47 96-142 84-131 (136)
45 1x8y_A Lamin A/C; structural p 38.6 82 0.0028 30.2 7.5 60 470-550 3-62 (86)
46 2d8k_A Synaptotagmin VII; exoc 38.3 47 0.0016 32.4 6.0 34 96-130 106-139 (141)
47 3tnu_B Keratin, type II cytosk 37.9 1.6E+02 0.0056 29.7 9.9 106 1341-1456 12-127 (129)
48 3oja_A Leucine-rich immune mol 37.5 2.6E+02 0.0088 32.9 13.0 57 528-584 422-478 (487)
49 3nmd_A CGMP dependent protein 37.1 68 0.0023 30.6 6.5 47 699-749 23-69 (72)
50 3b7y_A E3 ubiquitin-protein li 36.7 43 0.0015 33.0 5.5 45 96-140 99-152 (153)
51 2jee_A YIIU; FTSZ, septum, coi 35.0 1.1E+02 0.0036 29.9 7.5 27 349-375 38-64 (81)
52 3r2p_A Apolipoprotein A-I; amp 34.9 1.4E+02 0.0048 31.6 9.3 92 1358-1460 56-147 (185)
53 2eqb_B RAB guanine nucleotide 34.6 2E+02 0.0068 28.9 9.5 26 1252-1277 71-96 (97)
54 1l8d_A DNA double-strand break 34.3 2.3E+02 0.0078 27.4 10.0 29 461-489 8-36 (112)
55 3fbk_A RGS3, RGP3, regulator o 33.9 34 0.0012 34.0 4.3 41 98-138 109-149 (153)
56 2e62_A Protein AT5G25060; CWF2 33.8 51 0.0017 30.7 4.9 39 1468-1515 17-55 (61)
57 2js5_A Uncharacterized protein 33.3 53 0.0018 31.3 5.1 63 310-372 3-65 (71)
58 3oja_A Leucine-rich immune mol 33.3 1.1E+02 0.0038 35.9 9.1 81 918-998 364-452 (487)
59 2dmh_A Myoferlin; beta-sandwic 32.8 65 0.0022 31.1 5.9 47 96-142 83-134 (140)
60 3pyc_A E3 ubiquitin-protein li 30.9 52 0.0018 31.7 4.9 41 98-138 84-130 (132)
61 3m9b_A Proteasome-associated A 30.5 56 0.0019 37.2 5.6 66 311-377 25-100 (251)
62 3i00_A HIP-I, huntingtin-inter 30.4 81 0.0028 32.3 6.3 96 1238-1343 17-116 (120)
63 3hnw_A Uncharacterized protein 29.9 2.6E+02 0.009 29.0 10.1 38 1174-1211 26-65 (138)
64 3m7f_B E3 ubiquitin-protein li 28.7 76 0.0026 32.2 5.9 47 96-142 87-142 (176)
65 1ci6_A Transcription factor AT 27.2 1.4E+02 0.0049 27.2 6.7 40 462-501 22-61 (63)
66 3mov_A Lamin-B1; LMNB1, B-type 26.2 1.4E+02 0.0048 29.4 6.9 59 471-550 13-71 (95)
67 4emc_A Monopolin complex subun 26.1 1.5E+02 0.0052 32.6 7.8 54 1033-1086 13-66 (190)
68 3trt_A Vimentin; cytoskeleton, 25.9 3.3E+02 0.011 25.0 9.0 65 1335-1405 11-75 (77)
69 1go4_E MAD1 (mitotic arrest de 25.1 1.6E+02 0.0056 29.5 7.2 25 356-380 72-96 (100)
70 4etp_A Kinesin-like protein KA 25.0 1.2E+02 0.0043 35.8 7.6 38 464-501 4-41 (403)
71 2ep6_A MCTP2 protein; beta san 24.9 85 0.0029 30.2 5.2 42 96-140 86-131 (133)
72 1a93_B MAX protein, coiled coi 24.1 73 0.0025 26.8 3.7 32 459-490 3-34 (34)
73 3bas_A Myosin heavy chain, str 24.1 2.2E+02 0.0077 27.4 7.8 44 1236-1279 14-57 (89)
74 2jee_A YIIU; FTSZ, septum, coi 23.6 4.4E+02 0.015 25.8 9.5 66 459-528 9-74 (81)
75 2w83_C C-JUN-amino-terminal ki 23.0 2E+02 0.0067 28.0 6.9 63 1197-1273 12-74 (77)
76 2no2_A HIP-I, huntingtin-inter 23.0 5.8E+02 0.02 25.6 13.3 91 464-554 9-102 (107)
77 3s4r_A Vimentin; alpha-helix, 22.9 2.4E+02 0.0081 27.6 7.8 30 1199-1228 11-43 (93)
78 2chd_A Rabphilin-3A, exophilin 22.8 1.1E+02 0.0039 29.6 5.7 30 96-126 111-140 (142)
79 3vp9_A General transcriptional 22.2 2.2E+02 0.0075 28.3 7.4 74 1272-1358 11-89 (92)
80 1uii_A Geminin; human, DNA rep 22.2 1.5E+02 0.005 29.1 6.0 36 691-726 28-63 (83)
81 4fla_A Regulation of nuclear P 22.1 2.2E+02 0.0074 30.1 7.9 74 784-863 73-146 (152)
82 2e7s_A RAB guanine nucleotide 22.1 1.5E+02 0.0051 31.2 6.5 36 1245-1280 48-83 (135)
83 1v27_A Regulating synaptic mem 21.9 1.4E+02 0.0047 28.7 6.0 33 97-131 106-138 (141)
84 3q8t_A Beclin-1; autophagy, AT 21.7 4.2E+02 0.014 26.0 9.2 75 1048-1122 5-79 (96)
85 3q8t_A Beclin-1; autophagy, AT 21.6 3.6E+02 0.012 26.5 8.8 93 1068-1181 4-96 (96)
86 1t2k_D Cyclic-AMP-dependent tr 20.5 2.1E+02 0.0071 25.7 6.4 37 463-499 22-58 (61)
87 1dqv_A Synaptotagmin III; beta 20.0 3.2E+02 0.011 30.0 9.1 47 95-141 98-149 (296)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.62 E-value=0.08 Score=54.54 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=4.6
Q ss_pred hHHHHHHHHhhh
Q 000211 1005 DYLEVELQQLSS 1016 (1852)
Q Consensus 1005 ~~~e~elq~l~s 1016 (1852)
..|..++..+..
T Consensus 9 ~~l~~~~~~~~~ 20 (284)
T 1c1g_A 9 QMLKLDKENALD 20 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333444433333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.41 E-value=0.0002 Score=93.00 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhH
Q 000211 1061 EESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQ 1117 (1852)
Q Consensus 1061 ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~ 1117 (1852)
+.-..+..++..+...+..+..++..+......+.....++..++......+.....
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~ 969 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444444444444444444444444444444433333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.22 E-value=0.00061 Score=88.51 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000211 900 SVIMRLEVLQRNACQK 915 (1852)
Q Consensus 900 ~v~~~le~~q~~~c~k 915 (1852)
|++..||.+......+
T Consensus 778 g~l~~LE~~r~~~l~~ 793 (1184)
T 1i84_S 778 GVLAHLEEERDLKITD 793 (1184)
T ss_dssp THHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6777788665443333
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.97 E-value=7.5 Score=39.19 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=79.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH-HHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEE--NQRHML-GELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ--~q~q~~-~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1852)
...+.-|.+|-+.|+....+|-.|+.+++-+....+.|+.+.|. +.++.. +++..|++.--....+-.+|+++|++|
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999997654 222222 456678888777778888999999999
Q ss_pred HHHHHHHHHHHhhhHhHHHh
Q 000211 536 RLDVDEQVLRFSEERRDLES 555 (1852)
Q Consensus 536 eeel~~Q~~rF~edl~al~~ 555 (1852)
.+|+.=--.-|++++..|.+
T Consensus 96 ~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 96 QEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998777777777776654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.14 E-value=13 Score=41.16 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=56.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccc-h-------hHHHHHHHHhH
Q 000211 1437 YGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSEGY-I-------DEQKMLQNQCN 1508 (1852)
Q Consensus 1437 ~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~-~-------~el~~l~~~~~ 1508 (1852)
-+.+-.-+..|++.++.-...++++|-.++--.++++-.+-.+++.+++.++.+...... . .++..|..+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446788899999999999999999888888887777777777777777666555222 2 33344444444
Q ss_pred HHHHHHHHHHhhh
Q 000211 1509 ELRRKLSEQILKT 1521 (1852)
Q Consensus 1509 eltqklseqilkt 1521 (1852)
+|...+...+|+.
T Consensus 168 ~l~~~i~~~lL~~ 180 (256)
T 3na7_A 168 DLVEKTEPKIYSF 180 (256)
T ss_dssp HHHHTSCHHHHHH
T ss_pred HHHhcCCHHHHHH
Confidence 4444444444443
No 6
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=85.64 E-value=5.3 Score=38.45 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhH-HHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHH
Q 000211 465 IFELLRELDESKAERESLAKKMDQMECYYEALIQELEE--NQRHML-GELQNLRNEHSSCLYTVSSAKAEIEAMRLDVD 540 (1852)
Q Consensus 465 I~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ--~q~q~~-~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~ 540 (1852)
|-+|-+.|+....++-.|+-+++.|...-+.|+.+.|. +.++.. +++..|++.--.+-.+-.+|+++|++|.+|+.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888999999999999999999999997554 344333 56777998888888888999999999999874
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.25 E-value=12 Score=40.79 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=74.3
Q ss_pred hHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcc-cccchHHHHHHHHHhhhHhhhhhhhhhcccchhhhHHHHHHH
Q 000211 1247 SLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDL-DQQKSELVQLKLLVLDLESEKSRASEESSSVTSLQSELSEMH 1325 (1852)
Q Consensus 1247 Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~f-d~~~~EL~~Lk~qv~DLese~S~~~~ktsefk~Ls~hL~El~ 1325 (1852)
|.++++.=-+.+=+.....+..+...|+|-+.-=-.+ ..-..+|..+.+++.+|.+++.+...+.. ..+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e----------~~k 76 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVE----------ALK 76 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 3444444444444444445555555555443221111 12234556666666666666664433333 333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 000211 1326 ELLLAVDVRLIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSA 1405 (1852)
Q Consensus 1326 e~l~A~dvriiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeas 1405 (1852)
.++. -.+.+.-+-+..|..++.....--..+++++.|.+-.++..=.++... ..++.-+++-+..+
T Consensus 77 ~K~~-------~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~-------~~SleD~e~kln~a 142 (189)
T 2v71_A 77 EKLE-------HQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT-------IMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HhhHHHHHHHHHHH
Confidence 3332 223333445555666666666666666666666665555432222222 23333444444433
Q ss_pred HHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhh
Q 000211 1406 IAENRVLFHENNSLIAQSEEYKSRAETMADNYGEH 1440 (1852)
Q Consensus 1406 iaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Ee 1440 (1852)
+.+|-.+-.|+++ |..+....+...++
T Consensus 143 -------iEr~alLE~El~E-Ke~l~~~~QRLkdE 169 (189)
T 2v71_A 143 -------IERNAFLESELDE-KESLLVSVQRLKDE 169 (189)
T ss_dssp -------HHHHHHHHHHHHH-HHHHHCCC------
T ss_pred -------HHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444555553 55555444444444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.21 E-value=35 Score=37.72 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=41.6
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHML 508 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~ 508 (1852)
.+...++..+..+...|...+.+.+++..++.+++.+.+.+.+.++.++.+.-
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888777776543
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.08 E-value=4.6 Score=40.67 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhH
Q 000211 1393 TSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREEL 1472 (1852)
Q Consensus 1393 ~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ 1472 (1852)
.-|..|+..+..+..+|--+.-.-+-+...++++|.|.+.....+ ... ..=++++...+|+.+++|.++
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r----~~~-------E~di~~lrK~lD~~~l~r~dL 88 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR----EEA-------ENTLQSFRQDVDNASLARLDL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHH-------HHHHHHhhhcccHHHHHHHHH
Confidence 446777777878888877777777788888889998877644221 112 233556667789999999999
Q ss_pred HHHHHHHHHHHHhh
Q 000211 1473 EIKVVVLKAKLAEQ 1486 (1852)
Q Consensus 1473 ei~~~vlk~kl~e~ 1486 (1852)
|.++--|+..|.=+
T Consensus 89 E~~iesL~eEl~FL 102 (119)
T 3ol1_A 89 ERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888777665543
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.92 E-value=9.9 Score=50.05 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHh
Q 000211 729 TESNELLMQRLQTAM 743 (1852)
Q Consensus 729 ~~~~~~l~~~l~~a~ 743 (1852)
.-+-+.++.||....
T Consensus 517 ~~tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 517 KGSDDTWAQKLYNTH 531 (1080)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHh
Confidence 334456777777664
No 11
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.24 E-value=18 Score=36.80 Aligned_cols=72 Identities=13% Similarity=0.258 Sum_probs=58.3
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHH
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAM 535 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~L 535 (1852)
.+...|+..|-.|-.||+..+..+..|+..+..++.-|+.-...+. ..|..|++++..+
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q---------------------~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQ---------------------EMIGSVEEQLAQL 96 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999998875332221 2678899999999
Q ss_pred HHHHHHHHHHHhh
Q 000211 536 RLDVDEQVLRFSE 548 (1852)
Q Consensus 536 eeel~~Q~~rF~e 548 (1852)
..+|..|...|.+
T Consensus 97 r~em~~ql~EYq~ 109 (131)
T 3tnu_A 97 RCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988863
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.29 E-value=24 Score=38.04 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=91.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhh-------hhhHhhHhhhhhh
Q 000211 1032 TEEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLR-------DDLKSAVSDITSQ 1104 (1852)
Q Consensus 1032 ~~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~-------edl~~~vsdLaSE 1104 (1852)
++-..|+|-..+|+..-.+.+-....+=.+--..+-..-.+|.+-+..|+..|-.||+.+ -+++.++..|..+
T Consensus 26 sE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 26 SDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457777778888877777777776666677777888888899999999999998776 5788899999999
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhh
Q 000211 1105 LSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQ 1141 (1852)
Q Consensus 1105 L~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Ll 1141 (1852)
+...+..+...-.+|..|-.++.+...+.+++.++|+
T Consensus 106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~ 142 (168)
T 3o0z_A 106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999887754
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.68 E-value=19 Score=36.48 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=57.9
Q ss_pred CchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHH
Q 000211 457 PADSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMR 536 (1852)
Q Consensus 457 et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Le 536 (1852)
+...|+..|-.|-.||+..+..+..|+..+..++.-|+.-. .+.| ..|..|++++..+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l---~~~q------------------~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELAL---KDAR------------------NKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHhHHHHH
Confidence 56778888888999999999999999999999988887532 2211 26788999999999
Q ss_pred HHHHHHHHHHhh
Q 000211 537 LDVDEQVLRFSE 548 (1852)
Q Consensus 537 eel~~Q~~rF~e 548 (1852)
.+|..|...|.+
T Consensus 96 ~e~~~ql~EYq~ 107 (129)
T 3tnu_B 96 QDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998863
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.50 E-value=2.6 Score=41.12 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=63.5
Q ss_pred hhhhhhhccchhhhccchhHHhhHHhhhhccccchhhhHHHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhh
Q 000211 745 DIHFLNEYKASCIAKCNDMALQNQLLESNLQDVTCENRHLTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESL 824 (1852)
Q Consensus 745 ~~~sl~e~~~~~i~kc~d~a~~nq~lea~lq~~~~en~~l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l 824 (1852)
++..||.-=|+||-|--.+-.+|+.||++++.+. ++ .-.+..+.|++.+ ..|...+..-+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~-------~~---------~~~~~~~~ye~~i---~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLK-------GQ---------GKSRLGDLYEEEM---RELRRQVDQLTN 70 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hc---------cCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 4667888889999999999999999998775332 11 1123556677665 457777888888
Q ss_pred hcccchhhhHHHHHHHHHhhHhh
Q 000211 825 ENGNLRRETSLLQKELETVKIDF 847 (1852)
Q Consensus 825 ~~~~l~~e~~~~~~~~~~~k~~~ 847 (1852)
+++.+.-|+..++++++.+|.+|
T Consensus 71 ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 71 DKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 89999999999999988888764
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.82 E-value=58 Score=35.17 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=81.4
Q ss_pred hhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhh
Q 000211 1358 RLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNY 1437 (1852)
Q Consensus 1358 k~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~ 1437 (1852)
|.++|+..|+.-=-+...+-+|.-|.+.+-...+..++.+| ++.+..-...+..|+.+...+.+.+..=
T Consensus 13 kQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rEL-----------q~~~~~L~~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 13 KQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNREL-----------QERNRILENSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554333333333444444333333333333333 2223333333445555555566666555
Q ss_pred hhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHhccc-cchhHHHHHHHHhH
Q 000211 1438 GEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEIKVVVLKAKLAEQHAQVISSE-GYIDEQKMLQNQCN 1508 (1852)
Q Consensus 1438 ~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~-~~~~el~~l~~~~~ 1508 (1852)
...+++.+.-+.-+..=+.+++++++.+...-.-++--+-.|-.++..+..+..+++ +-..+|..+|.+|.
T Consensus 82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 556666666666666777788888888877666666666777777777777776664 45577888887764
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.69 E-value=1.1e+02 Score=33.52 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=45.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 000211 522 LYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQ 584 (1852)
Q Consensus 522 l~tIs~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaer 584 (1852)
..+|+.|+.++..+... ...+...+..|+-+|-..|+.+-.+..+|-=..-+|-.|-||
T Consensus 87 ~~~~~~Lq~el~~l~~~----~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAI----KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34788888888877644 444556678899999999999988888888877777777776
No 17
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.85 E-value=7.9 Score=37.30 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHHhhhhhhhhhHHH
Q 000211 1395 LDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEIDDLMMSREELEI 1474 (1852)
Q Consensus 1395 I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeeid~l~~~k~e~ei 1474 (1852)
|..|+..+..+..+|--+.-.-|-+...++.+|.|.|....-.. ...- =++++...+|+++++|.++|.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~----~~E~-------d~~~LrkdvD~a~l~r~dLE~ 70 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE----EAEN-------TLQSFRQDVDNASLARLDLER 70 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 56777888888888777766777788888888877665432221 1122 255666788999999999999
Q ss_pred HHHHHHHHHHhh
Q 000211 1475 KVVVLKAKLAEQ 1486 (1852)
Q Consensus 1475 ~~~vlk~kl~e~ 1486 (1852)
++--|+.-|.=+
T Consensus 71 kvesL~eEl~fL 82 (86)
T 3swk_A 71 KVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888766543
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.14 E-value=51 Score=35.15 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhccHHHHHHHHhhhhHHHhhhhhhhhHHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHhHHHhhH
Q 000211 1006 YLEVELQQLSSKNRDLAQEILALQVVTEEFDRSKQTISELTEENRALMVALQD-------KSEESVKLALEVDSFKQSFQ 1078 (1852)
Q Consensus 1006 ~~e~elq~l~s~n~~l~~~i~~l~~v~~E~~~tK~~~~el~~En~al~~slqd-------K~ees~~~~~El~slK~s~q 1078 (1852)
.||-+|+......+.....|..+...-.+++.+..-.+....|...|+..++. ....-.++-.||+.|-.||=
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF 96 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 96 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555556666666666666555555555555666665555532 23456788899999988854
Q ss_pred h-hhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHH
Q 000211 1079 S-LHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1852)
Q Consensus 1079 S-LhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1852)
. -+.=--.+|..+...+.++..|-.+|.++..-|.++..+.++|.
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34444567888999999999999999999999998888888873
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.59 E-value=73 Score=46.74 Aligned_cols=71 Identities=7% Similarity=0.194 Sum_probs=43.6
Q ss_pred hHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH---HHHHHhhhHhhhhhHHhhhh
Q 000211 1072 SFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL---IQKTAVLTKENQDLMVSLQN 1142 (1852)
Q Consensus 1072 slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL---l~~~~~dlEea~sl~~~Lls 1142 (1852)
=++..+..+..++...+.-...++..+.++-..|..++..+...-.+++.| ++....+++.|..++..|-+
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555666666666666666666666666666666 55566677777777666644
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.59 E-value=29 Score=45.79 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=8.9
Q ss_pred hhhhhccccchhHHHHHHHHhhhccHHHHHHHHhhhh-HHHhhhhhhhhHHHH
Q 000211 994 AQRHTDLFSDLDYLEVELQQLSSKNRDLAQEILALQV-VTEEFDRSKQTISEL 1045 (1852)
Q Consensus 994 ~~~~~~l~s~l~~~e~elq~l~s~n~~l~~~i~~l~~-v~~E~~~tK~~~~el 1045 (1852)
...+..|-+.+..|...|++...+|.+|.+++..+.. ...|...++..+++|
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3345666677777777777777777777766554332 334444444444333
No 21
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=63.44 E-value=52 Score=31.33 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 000211 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEER 550 (1852)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~edl 550 (1852)
||+..+..+..|+..+..++.-|+.-. .+.| .+|+.+++++..+..+|..|...|.+=+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~---~~~q------------------~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEA---ANYQ------------------DTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998887532 2211 3788999999999999999988875433
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.76 E-value=24 Score=35.37 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCchhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000211 456 NPADSVGGKIFELLRELDESKAERESLAKKMDQMEC 491 (1852)
Q Consensus 456 ~et~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~l 491 (1852)
.+...++.+|-.|-.|-+..+++++.||+++++.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366889999999999999999999999999988544
No 23
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=59.46 E-value=2.4e+02 Score=32.05 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=19.5
Q ss_pred hhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHH
Q 000211 1419 LIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEE 1460 (1852)
Q Consensus 1419 ~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~ee 1460 (1852)
|.-+++++++++.--.-.++ ..+...++.++.=|..+=.
T Consensus 214 ~~qq~e~f~~~~~p~~e~~~---~~l~~~~e~l~~~l~~~~~ 252 (273)
T 3s84_A 214 LDQQVEEFRRRVEPYGENFN---KALVQQMEQLRQKLGPHAG 252 (273)
T ss_dssp HHHHHHHHHHHHTTHHHHHH---HHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHhHhhHHHHH---HHHHHHHHHHHHHhCcchh
Confidence 44556666666544333333 3366666666665544433
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.48 E-value=1e+02 Score=31.52 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHH
Q 000211 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRL 537 (1852)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Lee 537 (1852)
||+..+..-...+..+.-+..+++-|++++.+ +-.++-||..|++|++.-..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q---------------~~~~lE~I~vLkaQv~IY~~ 76 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ---------------HKIVMETVPVLKAQADIYKA 76 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 55555566666777777788888889988887 22344678888888776543
No 25
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.31 E-value=1.1e+02 Score=31.04 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHH
Q 000211 481 SLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEERRDLESLNKEL 560 (1852)
Q Consensus 481 eLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~edl~al~~~kvEq 560 (1852)
+|..+..+|.-++|.+|-++++++. .+..+|+.|+.++..|...- ..+...++.|+-+|-.+
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~--------------e~~~~~~~Lq~El~~lr~~~----~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA--------------QSYKQVSVLEDDLSQTRAIK----EQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhchHH
Confidence 5677778888888888888888443 33456777777777765443 34556678889999999
Q ss_pred HHhhhhHHHHHHHHhhhhhHHHHH
Q 000211 561 ERRAVSAEAALKRARLNYSIAVNQ 584 (1852)
Q Consensus 561 EqRAI~AEeALRKtRwnnA~aaer 584 (1852)
||++-.+-.+|-=.=-+|-.|.||
T Consensus 69 ER~~R~t~~SLeD~E~k~n~aiEr 92 (111)
T 2v66_B 69 ERAKRATIVSLEDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999888888887655555555554
No 26
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.02 E-value=1.3e+02 Score=32.02 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=54.1
Q ss_pred HHhhHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHHHHhHhhhhhccccchhHHHHHHHHhhh
Q 000211 951 FEHDLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEVEENNAQRHTDLFSDLDYLEVELQQLSS 1016 (1852)
Q Consensus 951 ~e~d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ee~y~~~~~~l~s~l~~~e~elq~l~s 1016 (1852)
.+.|+...-+++..+++-+..|+-++.++.+.+|.-.-.+++|+++-..+-..+..|...|++.-.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999766555555555544444433
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=55.90 E-value=1.7e+02 Score=29.62 Aligned_cols=112 Identities=22% Similarity=0.373 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHhhhccHHHH
Q 000211 1383 QCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNYGEHKSQLALEVERMKQLLVGSEEEI 1462 (1852)
Q Consensus 1383 ~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~~Eeksk~a~Eve~lK~LL~~~eeei 1462 (1852)
...++...+...|..|+..|+.+-+....|-.. .+....+++.+...|..=+.++...++-.
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~------------------~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~ 71 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEK------------------MVSLLQEKNDLQLQVQAEQDNLADAEERC 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334445555555666666655554444444333 34444455666666667778888899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHH
Q 000211 1463 DDLMMSREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLS 1515 (1852)
Q Consensus 1463 d~l~~~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqkls 1515 (1852)
+.|...|.++|-++--+.++|++...+...|. .+-..+...|.+|...|-
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L~---~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELT---AKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988766665542 222344555555555443
No 28
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=55.15 E-value=29 Score=33.73 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=28.0
Q ss_pred CCcccccceeecchhhcccccCCeeeeecCCCCC
Q 000211 95 SSRSSILGEATINLADYADASKPSTVLLPLHGGD 128 (1852)
Q Consensus 95 SsksgiLGEasinlAdY~~a~kp~~VSLPLk~cn 128 (1852)
.++..+||++.|+|++..........-+||+.-+
T Consensus 102 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 3467899999999999988777778889996554
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.20 E-value=93 Score=33.20 Aligned_cols=53 Identities=19% Similarity=0.396 Sum_probs=38.7
Q ss_pred hhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhccccc
Q 000211 1232 SRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQ 1286 (1852)
Q Consensus 1232 aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~ 1286 (1852)
.++..+.......+..+..++..++..|..++.....+...|.++-+.| |+.-
T Consensus 47 ~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL--FeEA 99 (154)
T 2ocy_A 47 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL--FDEA 99 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3333444445566777888888899999888888888888888887777 6543
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.01 E-value=84 Score=32.64 Aligned_cols=40 Identities=20% Similarity=0.050 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 460 SVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQE 499 (1852)
Q Consensus 460 ~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQe 499 (1852)
.|++.|-++..||..+|.+.-++.++.+.+...++.|+.+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.16 E-value=40 Score=41.63 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=84.0
Q ss_pred hhHHHhhhhhHHHHHHhh-hhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhH-HHHHHHHHhhHhhhhhhhhhhhHH
Q 000211 781 NRHLTQKLSEWESLMMDF-KSFQSKYEAIAAEKTELANLLEKESLENGNLRRETS-LLQKELETVKIDFDELASVNKNLQ 858 (1852)
Q Consensus 781 n~~l~~k~~e~e~~v~e~-~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~-~~~~~~~~~k~~~~~~~s~~~~lq 858 (1852)
|.=|+..|+++...|.++ +++.+-|.....=...|..=+..- -++.+-.+|++ .|...+..||++++.+.+....||
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~-~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA-NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788777777665 222222222211111222222222 25556677888 899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccc---ccccccccccccccccCHHHHHHHHHHH
Q 000211 859 RTINNLQNKMHDMLSSYGESFS---ELCLHNKSADQNLESKDLTSVIMRLEVL 908 (1852)
Q Consensus 859 ~~~~~lq~kl~~~l~sy~~~~~---~l~l~~~s~~~dl~~~d~~~v~~~le~~ 908 (1852)
.++..+-.||+.|=.--|..|- + .|.........-++|.+.=.||+.+
T Consensus 138 snLedq~~kIQRLEvDIdiqirsCKg--sCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRSCRG--SCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGG--TBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cccchheeecchHHHHHHHHHHHHH
Confidence 9999999999998654444432 3 5677788888888998876676644
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=48.75 E-value=2e+02 Score=29.21 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=10.7
Q ss_pred HHHHhhhhHHHhhHHHHHhhhhhhhh
Q 000211 1251 ELQSERSLRDELKNVVTDLTSQLNEK 1276 (1852)
Q Consensus 1251 EL~~ersLreeLE~tV~~L~skLdEk 1276 (1852)
....+..-+..++..|.+|+.+|++.
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.31 E-value=41 Score=34.40 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=43.4
Q ss_pred hHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhh-chhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 311 SIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIA-SGEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 311 sIEkLKsE~~sL~Rqad~selELQtLRKQivKEsk-rgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
.|+.|+.|+..|.-..+.+.+|-| .++...+ +-..|..|+..-+..++..+.||++||
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q----~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQ----RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999988 5555555 355677777776666555555666655
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.86 E-value=73 Score=39.47 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHH-hHHHHHHHHHHHHHHHHHHH
Q 000211 468 LLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVS-SAKAEIEAMRLDVDEQVLRF 546 (1852)
Q Consensus 468 L~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs-~Leaqve~Leeel~~Q~~rF 546 (1852)
+..-|+..|..-+++..-=.....||..++..|.+.|.|.. +..| -.+.|+ +|+-+++.|+.+++.|+...
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdN-------tynE~S~ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDN-------TYNRVSEDLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHH-------HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccch-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455556666665555444333 2222 233344 66667777777776666444
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.79 E-value=83 Score=37.59 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHH
Q 000211 1037 RSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDEL 1084 (1852)
Q Consensus 1037 ~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl 1084 (1852)
..+.-.+.+..+++++-.+++.+.++--.+-.|++.++.-++.-.+..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 334444555555666555555555555444444444444444433333
No 36
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=45.05 E-value=33 Score=32.49 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEEeee
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQLL 140 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ~l 140 (1852)
+..++|++.|+|.++.. ..+....+||... ....+|++++..
T Consensus 83 ~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~-~~g~i~~~le~~ 124 (126)
T 1rlw_A 83 MDETLGTATFTVSSMKV-GEKKEVPFIFNQV-TEMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCT-TCEEEEEEEETTT-EEEEEEEEEECC
T ss_pred CCceeEEEEEEHHHccC-CCcEEEEEEcCCC-ceEEEEEEEEeC
Confidence 57899999999999864 5677889999874 344667776644
No 37
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=42.94 E-value=4.2e+02 Score=30.06 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=6.6
Q ss_pred hHHHHHHHHHhhhcc
Q 000211 1444 LALEVERMKQLLVGS 1458 (1852)
Q Consensus 1444 ~a~Eve~lK~LL~~~ 1458 (1852)
+.--++.||..|..+
T Consensus 130 ~~~~leeLr~~l~P~ 144 (273)
T 3s84_A 130 IDQTVEELRRSLAPY 144 (273)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhH
Confidence 333344444444443
No 38
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=42.54 E-value=27 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 477 AERESLAKKMDQMECYYEALIQELEE 502 (1852)
Q Consensus 477 ~drEeLe~qMeQL~ldYE~LkQeLEQ 502 (1852)
--|++|-.++|+|++.+++|+.||+-
T Consensus 30 vvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 30 IVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34678999999999999999998776
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.50 E-value=6.4e+02 Score=37.66 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=19.9
Q ss_pred hhHhhhhhhhh---------hhhhhhhhhhHhhHHHHHHH
Q 000211 1096 SAVSDITSQLS---------AKHSQLLDFDQQKSELIQKT 1126 (1852)
Q Consensus 1096 ~~vsdLaSEL~---------eK~~sL~sfd~enqeLl~~~ 1126 (1852)
++++.||+=.. .+.+.+.+|+.....++.+.
T Consensus 1660 qSLtrLAa~i~~~~vfqi~i~k~Y~~~~f~eDLk~l~~~a 1699 (3245)
T 3vkg_A 1660 SVLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRA 1699 (3245)
T ss_dssp HHHHHHHHHHTTCEEECCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeeEEEeeeCCCCHHHHHHHHHHHHHHH
Confidence 34677776655 45677888888888776654
No 40
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.50 E-value=27 Score=36.58 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHHHhhHhhhH-HHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHH
Q 000211 1062 ESVKLALEVDSFKQSFQSLHD-ELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELI 1123 (1852)
Q Consensus 1062 es~~~~~El~slK~s~qSLhd-El~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl 1123 (1852)
+-.++-.||+.|-.||=.--+ =--.+|..+...+.++..|-.++.++..-|.++..|.++|.
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999888544433 34567888899999999999999999999999888888874
No 41
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.43 E-value=66 Score=32.76 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 000211 792 ESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINNLQNKMHDM 871 (1852)
Q Consensus 792 e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~lq~kl~~~ 871 (1852)
+++-.|+.+|.+||+..-.|-. -..+.|++|+..++..-+.++..+.+|--.|++|.+---....-|.++
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e~~----------~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQSY----------KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4666888999999998655533 245678899999999999999999999999999987655444444444
Q ss_pred hhhccc
Q 000211 872 LSSYGE 877 (1852)
Q Consensus 872 l~sy~~ 877 (1852)
=+-||.
T Consensus 83 E~k~n~ 88 (111)
T 2v66_B 83 EQRLNQ 88 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.34 E-value=46 Score=33.77 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=53.7
Q ss_pred hhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHhhhHhhhhhhhhhcc
Q 000211 1233 RLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQKSELVQLKLLVLDLESEKSRASEESS 1312 (1852)
Q Consensus 1233 q~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~~~EL~~Lk~qv~DLese~S~~~~kts 1312 (1852)
..-.++..|+..+++++-||+.+++.+..|+.++.++.... ..++..++..+.+|+.++.....
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~-------------~~~l~~~q~~i~~lE~eL~~~r~--- 98 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY-------------CMQLAQIQEMIGSVEEQLAQLRC--- 98 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34456788889999999999999999999999888876643 34567778888888888875542
Q ss_pred cchhhhHHHHHHHhhh
Q 000211 1313 SVTSLQSELSEMHELL 1328 (1852)
Q Consensus 1313 efk~Ls~hL~El~e~l 1328 (1852)
.+.-|+.|..+.+
T Consensus 99 ---em~~ql~EYq~Ll 111 (131)
T 3tnu_A 99 ---EMEQQNQEYKILL 111 (131)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHH
Confidence 2455666766544
No 43
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=39.75 E-value=28 Score=33.78 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=51.5
Q ss_pred hhhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHh
Q 000211 309 ESSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIK 373 (1852)
Q Consensus 309 EdsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs 373 (1852)
+++|++||.|++-|.|.|-...|+|..|..-|=.--.+--+++.+.-....+-+.+|+++..+..
T Consensus 14 ~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999776655555556778888899999999999998877653
No 44
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=38.89 E-value=16 Score=35.23 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=34.2
Q ss_pred CcccccceeecchhhcccccCCeeeeecCC-CCCCCCeEEEEEeeecc
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPLH-GGDSGTILHVTVQLLTS 142 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk-~cnsGtvLHVtIQ~l~~ 142 (1852)
++..++|++.|++.+......+....+||. +......|||.++....
T Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 468899999999999966555556677774 22344568898887743
No 45
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.60 E-value=82 Score=30.25 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhh
Q 000211 470 RELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEE 549 (1852)
Q Consensus 470 ~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~ed 549 (1852)
.||+..+..+..|+..+..++.-|+. ++++.| .+|+.+++++..+..+|..|...|.+=
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~---~l~~~q------------------~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR---ERDTSR------------------RLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888777654 233321 378888999999999999998887543
Q ss_pred H
Q 000211 550 R 550 (1852)
Q Consensus 550 l 550 (1852)
+
T Consensus 62 l 62 (86)
T 1x8y_A 62 L 62 (86)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.31 E-value=47 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCCCCC
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPLHGGDSG 130 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsG 130 (1852)
++..+||++.|+|.++... .+...-+||.....|
T Consensus 106 ~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~~~~~ 139 (141)
T 2d8k_A 106 SRNDPIGEVSIPLNKVDLT-QMQTFWKDLKPSGPS 139 (141)
T ss_dssp SSCEEEEEEEEETTTSCTT-SCEEEEECCEECCCC
T ss_pred CCCcEEEEEEEEhhhhcCC-CCccEEEECcCCCCC
Confidence 4678999999999998764 467888999776654
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.87 E-value=1.6e+02 Score=29.68 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhh-------chhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhh
Q 000211 1341 QYEAWVEELVQQVYS-------TDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLF 1413 (1852)
Q Consensus 1341 QYEtkvqEL~~QL~~-------Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~ 1413 (1852)
.|.+++++|..+... ++.-..++....+....++...+ ..|+.|...|.+++......+.+-+..+
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~-------~~~~~LE~~l~e~e~~~~~~l~~~q~~i 84 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK-------KQCANLQNAIADAEQRGELALKDARNKL 84 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888766532 33344444444444444443332 2355555555555555555555544444
Q ss_pred hchhhhhhchhhhhhhhHHhhhhhh---hhhhhhHHHHHHHHHhhh
Q 000211 1414 HENNSLIAQSEEYKSRAETMADNYG---EHKSQLALEVERMKQLLV 1456 (1852)
Q Consensus 1414 nand~~~AElEE~Kqr~E~~l~~~~---Eeksk~a~Eve~lK~LL~ 1456 (1852)
.... +++-.-|+..+.-+++|. .-|..+..||+--+.||-
T Consensus 85 ~~lE---~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 85 AELE---EALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 3322 444444444444444443 334445555555666654
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.48 E-value=2.6e+02 Score=32.87 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHhhhHHHHHhhhhHHHHHHHHhhhhhHHHHH
Q 000211 528 AKAEIEAMRLDVDEQVLRFSEERRDLESLNKELERRAVSAEAALKRARLNYSIAVNQ 584 (1852)
Q Consensus 528 Leaqve~Leeel~~Q~~rF~edl~al~~~kvEqEqRAI~AEeALRKtRwnnA~aaer 584 (1852)
+.++++...+.++.-...+.+.++.+...|..++.-+-....++..++-.|-.|+.|
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 334444444444444444444444444444444444445555555555555555444
No 49
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.08 E-value=68 Score=30.64 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhhhhh
Q 000211 699 TLQKTLLEASGEIRLMKERMDELSHQLELSTESNELLMQRLQTAMNDIHFL 749 (1852)
Q Consensus 699 ~l~et~~~a~~~i~~mker~~~l~~ql~~s~~~~~~l~~~l~~a~d~~~sl 749 (1852)
-|++++-....+|+.-.++|.+|+.+|. .++.+++.|++-+|...|+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc
Confidence 4677777778889999999999999985 6889999999999988775
No 50
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=36.75 E-value=43 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=32.2
Q ss_pred CcccccceeecchhhcccccCC-----eeeeecCCCC----CCCCeEEEEEeee
Q 000211 96 SRSSILGEATINLADYADASKP-----STVLLPLHGG----DSGTILHVTVQLL 140 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp-----~~VSLPLk~c----nsGtvLHVtIQ~l 140 (1852)
++..++|++.|++.+....... ....+||... .....|||+++.+
T Consensus 99 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 99 TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp SCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred cCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 4788999999999998876542 1366788433 3446788888764
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.04 E-value=1.1e+02 Score=29.92 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=17.7
Q ss_pred hHHHHHHhhHHHHhhHHHHHHHHHhhh
Q 000211 349 QLAEEVSALKSECSHLKSDLERLIKLR 375 (1852)
Q Consensus 349 dLsrEVs~LK~ERD~LK~EcEqLKs~k 375 (1852)
.|+.|+..++..|+.|.+|.++||.-+
T Consensus 38 ~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 38 SLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566666666777777777777766543
No 52
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=34.86 E-value=1.4e+02 Score=31.60 Aligned_cols=92 Identities=12% Similarity=0.211 Sum_probs=42.7
Q ss_pred hhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhhhchhhhhhchhhhhhhhHHhhhhh
Q 000211 1358 RLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSAIAENRVLFHENNSLIAQSEEYKSRAETMADNY 1437 (1852)
Q Consensus 1358 k~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeasiaekR~L~nand~~~AElEE~Kqr~E~~l~~~ 1437 (1852)
.+...++.++.-+-.++..++..++.-+ -++|..-+.+++..|.--+.+-+..+. ..+++++.++.-...++
T Consensus 56 ~~~~~l~~~l~p~~~e~~~~l~~~~~~L--r~~l~kdlee~r~~l~P~~~e~~~~~~------~~~e~lr~~l~Py~~el 127 (185)
T 3r2p_A 56 STFSKLREQLGPVTQEFWDNLEKETEGL--RQEMSKDLEEVKAKVQPYLDDFQKKWQ------EEMELYRQKVEPLRAEL 127 (185)
T ss_dssp CHHHHHHHHHCSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHH
Confidence 3455556665555555555554443321 123333344444444444444333332 33556666655555544
Q ss_pred hhhhhhhHHHHHHHHHhhhccHH
Q 000211 1438 GEHKSQLALEVERMKQLLVGSEE 1460 (1852)
Q Consensus 1438 ~Eeksk~a~Eve~lK~LL~~~ee 1460 (1852)
.+. +...++.|+.-|..+=+
T Consensus 128 ~~~---~~~~~e~Lr~~L~p~~e 147 (185)
T 3r2p_A 128 QEG---ARQKLHELQEKLSPLGE 147 (185)
T ss_dssp HHH---HHHHHTTTTTTSHHHHH
T ss_pred HHH---HHhhHHHHHHHHHHHHH
Confidence 433 44455555554444433
No 53
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.59 E-value=2e+02 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHhhhhHHHhhHHHHHhhhhhhhhh
Q 000211 1252 LQSERSLRDELKNVVTDLTSQLNEKH 1277 (1852)
Q Consensus 1252 L~~ersLreeLE~tV~~L~skLdEk~ 1277 (1852)
+-+.|.-+..++.++..|..+|.+++
T Consensus 71 Va~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 71 VADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456778899999999999999875
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.29 E-value=2.3e+02 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000211 461 VGGKIFELLRELDESKAERESLAKKMDQM 489 (1852)
Q Consensus 461 Le~KI~eL~~EIE~yk~drEeLe~qMeQL 489 (1852)
++.++.++..+|...+..+..+..+++++
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333
No 55
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=33.93 E-value=34 Score=34.03 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=34.3
Q ss_pred ccccceeecchhhcccccCCeeeeecCCCCCCCCeEEEEEe
Q 000211 98 SSILGEATINLADYADASKPSTVLLPLHGGDSGTILHVTVQ 138 (1852)
Q Consensus 98 sgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGtvLHVtIQ 138 (1852)
..+||++.|++.+......+..--+||.....|.-.|+.++
T Consensus 109 d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~ 149 (153)
T 3fbk_A 109 SGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149 (153)
T ss_dssp CEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred CcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence 78999999999999877788999999998888887777654
No 56
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=33.80 E-value=51 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHhccccchhHHHHHHHHhHHHHHHHH
Q 000211 1468 SREELEIKVVVLKAKLAEQHAQVISSEGYIDEQKMLQNQCNELRRKLS 1515 (1852)
Q Consensus 1468 ~k~e~ei~~~vlk~kl~e~~~~i~~~~~~~~el~~l~~~~~eltqkls 1515 (1852)
.+-++||+||-|.++|+++ |..+ -..++.+|++++.||-
T Consensus 17 klR~IEvk~me~rD~LEeq--------G~~~-~~eI~~kV~~~RkkL~ 55 (61)
T 2e62_A 17 KRRRIEVALIEYRETLEEQ--------GMKN-PEEIERKVEINRKRLE 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--------CCCc-HHHHHHHHHHHHHHHH
Confidence 4568899999999999997 3332 4567889999999884
No 57
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=33.35 E-value=53 Score=31.31 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.8
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHH
Q 000211 310 SSIHELKLEVSSLQSHADEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLI 372 (1852)
Q Consensus 310 dsIEkLKsE~~sL~Rqad~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLK 372 (1852)
++|++||.|++-|.|.|-...|+|-.|..-|=.--.+--+++.+.-....+-+.+|+++-.|.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999976655444444667888888899999999998876653
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.34 E-value=1.1e+02 Score=35.93 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhHhHhhhhcccchhhHHHHHHHHHh--------hHHhhhhhhhccHHHHHHHHHHHHHHhhhhccchHH
Q 000211 918 QLMQEKKALIDEKDRAEMSFSKSESDIVLVKQKFEH--------DLRNMIDKQSVSNALLQKLQLRFEAVADKLKVSSEV 989 (1852)
Q Consensus 918 ~l~~ek~~l~~e~d~~~~~~~~aes~~~~~kqk~e~--------d~~~m~~kl~~s~~l~qklq~~~e~~~~k~k~~se~ 989 (1852)
++.+++++++..-+..+......+-.+..+.+.++. .+..|-.-....+++.+++|.+.+.+..-+++.++-
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 677888888887777777777666666666666662 333333334445566677777777766666666555
Q ss_pred HHhHhhhhh
Q 000211 990 EENNAQRHT 998 (1852)
Q Consensus 990 ee~y~~~~~ 998 (1852)
.+++...+.
T Consensus 444 ~~~~~~~~~ 452 (487)
T 3oja_A 444 ETQLAEENA 452 (487)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555444443
No 59
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.83 E-value=65 Score=31.14 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=31.8
Q ss_pred CcccccceeecchhhcccccC-Ceeee-ecCCCCC---CCCeEEEEEeeecc
Q 000211 96 SRSSILGEATINLADYADASK-PSTVL-LPLHGGD---SGTILHVTVQLLTS 142 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~k-p~~VS-LPLk~cn---sGtvLHVtIQ~l~~ 142 (1852)
++..+||++.|++.++..... ...+. +||.+.+ .++.|||.|+...+
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 467899999999999865432 22233 5575543 33788999988743
No 60
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=30.91 E-value=52 Score=31.65 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=30.4
Q ss_pred ccccceeecchhhcccccCCeeeeecCCCCC------CCCeEEEEEe
Q 000211 98 SSILGEATINLADYADASKPSTVLLPLHGGD------SGTILHVTVQ 138 (1852)
Q Consensus 98 sgiLGEasinlAdY~~a~kp~~VSLPLk~cn------sGtvLHVtIQ 138 (1852)
..+||++.|.+.+......+....+||..-+ ...-|||.++
T Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 84 AGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp TTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred CCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 5899999999999877777666778886542 1346777765
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.50 E-value=56 Score=37.16 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=38.8
Q ss_pred hHHHHHhHHhhhhhhh----------hhhhhhHHHHHHHHHHHhhchhhHHHHHHhhHHHHhhHHHHHHHHHhhhhc
Q 000211 311 SIHELKLEVSSLQSHA----------DEIGMEAQNFAQKLAAEIASGEQLAEEVSALKSECSHLKSDLERLIKLRSC 377 (1852)
Q Consensus 311 sIEkLKsE~~sL~Rqa----------d~selELQtLRKQivKEskrgqdLsrEVs~LK~ERD~LK~EcEqLKs~kk~ 377 (1852)
.|+.|..|+..|.++. .. +-.+..|++|+..=..+-.-|..++..++.|-..||.|+++|++-=..
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~ 100 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG 100 (251)
T ss_dssp ---------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 4445555555554443 23 334667778886666667779999999999999999999999986553
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.39 E-value=81 Score=32.31 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred ccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhhhccccc----chHHHHHHHHHhhhHhhhhhhhhhccc
Q 000211 1238 GNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQLLDLDQQ----KSELVQLKLLVLDLESEKSRASEESSS 1313 (1852)
Q Consensus 1238 ~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL~~fd~~----~~EL~~Lk~qv~DLese~S~~~~ktse 1313 (1852)
+..|+..+..+..+++.. +.+....|..|+++++++++.|..-... ..|...|+....+|....- ++.
T Consensus 17 Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~----~~~- 88 (120)
T 3i00_A 17 IERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQRE----DTE- 88 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhH-
Confidence 334555555555555543 7788888888888888888877322211 2345555555554433222 222
Q ss_pred chhhhHHHHHHHhhhhhhhHHHHHHHHHHH
Q 000211 1314 VTSLQSELSEMHELLLAVDVRLIFTRTQYE 1343 (1852)
Q Consensus 1314 fk~Ls~hL~El~e~l~A~dvriiF~KeQYE 1343 (1852)
.++.-+.|...++-|..-||-=.|+-|-
T Consensus 89 --~~q~~~~e~E~kAqa~Eerf~KLKe~yt 116 (120)
T 3i00_A 89 --KAQRSLSEIERKAQANEQRYSKLKEKYS 116 (120)
T ss_dssp ------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777776666665553
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.91 E-value=2.6e+02 Score=29.01 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=20.5
Q ss_pred chHHHHhhhhhhHHHHHHHHHh--hhhhhhhhhHHHHHHH
Q 000211 1174 LSDELKSRAIDISSQLNEKQQQ--LIDFDQQNSEMIQKIA 1211 (1852)
Q Consensus 1174 ~~e~LQsk~~Dves~Ln~~~~~--e~e~~~enSeL~~~~~ 1211 (1852)
.-++|+.....|...|...... -..+....-...+.++
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALN 65 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLN 65 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 3466777777777776666533 4444444444444433
No 64
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=28.66 E-value=76 Score=32.25 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=30.5
Q ss_pred CcccccceeecchhhcccccCCee-----eeecCCC----CCCCCeEEEEEeeecc
Q 000211 96 SRSSILGEATINLADYADASKPST-----VLLPLHG----GDSGTILHVTVQLLTS 142 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~-----VSLPLk~----cnsGtvLHVtIQ~l~~ 142 (1852)
++..+||++.|+|++......... ..+||.. ......|||.|..+..
T Consensus 87 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 87 TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp --CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 467899999999999987644311 4567643 2245789999998854
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.20 E-value=1.4e+02 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 462 GGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1852)
Q Consensus 462 e~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1852)
++++.+|..+++....+..+|..++++|.-.+.-|++-|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999988887554
No 66
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.24 E-value=1.4e+02 Score=29.38 Aligned_cols=59 Identities=10% Similarity=0.209 Sum_probs=39.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHhhhH
Q 000211 471 ELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLDVDEQVLRFSEER 550 (1852)
Q Consensus 471 EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leeel~~Q~~rF~edl 550 (1852)
.|..++..+..|+.++..++..|.. ++++.| .+|..+++++..+..+|..|...|.+=+
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q------------------~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAK---EKDNSR------------------RMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566678888888888887764 333322 2677889999999999999988886433
No 67
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.12 E-value=1.5e+02 Score=32.60 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=38.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHH
Q 000211 1033 EEFDRSKQTISELTEENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLV 1086 (1852)
Q Consensus 1033 ~E~~~tK~~~~el~~En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~a 1086 (1852)
+-++..-+.|+.|.-||..|..-++.|+.+...+-.+|.+++....-..+.+..
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 345666778899999999999999999998888888888888876555554433
No 68
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.87 E-value=3.3e+02 Score=25.04 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhccHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 000211 1335 LIFTRTQYEAWVEELVQQVYSTDRLLTELHTKNVDVETVLNSCLAREAQCNEENARLLTSLDTLRSELDSA 1405 (1852)
Q Consensus 1335 iiF~KeQYEtkvqEL~~QL~~Skk~~eElq~K~qDaedeln~~lksEa~~~keNaeL~~~I~eLesELeas 1405 (1852)
|.-++.|||.-++--+..+-. =++.|..++-.....+-..=...-.+..+|-..|.+|++||++.
T Consensus 11 l~eiRaQYE~ia~knr~EaE~------~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE------WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.13 E-value=1.6e+02 Score=29.54 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=18.6
Q ss_pred hhHHHHhhHHHHHHHHHhhhhcCCC
Q 000211 356 ALKSECSHLKSDLERLIKLRSCHPF 380 (1852)
Q Consensus 356 ~LK~ERD~LK~EcEqLKs~kk~~~~ 380 (1852)
..+.+-..|+.|||.||..-..+.+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888899999998876665543
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.03 E-value=1.2e+02 Score=35.84 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 464 KIFELLRELDESKAERESLAKKMDQMECYYEALIQELE 501 (1852)
Q Consensus 464 KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLE 501 (1852)
||-.|..||+..++++++|+..+++++..++.++++|-
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888888888888888888643
No 71
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=24.86 E-value=85 Score=30.21 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=30.7
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCCCC----CCCeEEEEEeee
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPLHGGD----SGTILHVTVQLL 140 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~cn----sGtvLHVtIQ~l 140 (1852)
++..++|++.|++.+.... ....+||...+ ....|||.|+.+
T Consensus 86 ~~~~~lG~~~i~l~~l~~~---~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 86 KPPDFLGKVAIPLLSIRDG---QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEECCBCEEEGGGCCSS---CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCeeEEEEEEHHHccCC---CceEEEeecCCCCCccceEEEEEEEEE
Confidence 4788999999999998653 23567876432 446788988765
No 72
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.11 E-value=73 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=28.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQME 490 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ 490 (1852)
+.|+.|+.....+||+.|+..--|++|+-.|+
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999987653
No 73
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.09 E-value=2.2e+02 Score=27.35 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=35.2
Q ss_pred ccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhh
Q 000211 1236 SEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQ 1279 (1852)
Q Consensus 1236 ~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~q 1279 (1852)
.++..+...+..+.+.+......|.+|+.+...|..+-+....+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888899999999999988888877777665
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.55 E-value=4.4e+02 Score=25.76 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=42.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhH
Q 000211 459 DSVGGKIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSA 528 (1852)
Q Consensus 459 ~~Le~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~L 528 (1852)
+-|+.||-.+...|...+-+-++|..+=..++...+.+...-+. ...|.+.|+.||+.-=..|..|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~----L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREE----LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999977777777777777766666666554443221 1134555777776654444444
No 75
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.02 E-value=2e+02 Score=27.96 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=41.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhHHHHHHHHhHhHHHhhhhhccccchHHHHHhHHHHHHHhhhhHHHhhHHHHHhhhhh
Q 000211 1197 IDFDQQNSEMIQKIAELTSENQALMVSLQEYAEESSRLASEGNTSKETLQSLRDELQSERSLRDELKNVVTDLTSQL 1273 (1852)
Q Consensus 1197 ~e~~~enSeL~~~~~~L~~en~a~mv~L~d~kee~aq~a~e~~~Lk~~L~Sl~eEL~~ersLreeLE~tV~~L~skL 1273 (1852)
..++.+|++|....+-|-=-+.++.+.+.+-+++ =..+..|+...+..+..++.++..|-..|
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999877788888888777766 23445566666666666666666554443
No 76
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.96 E-value=5.8e+02 Score=25.55 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHhhhhhhhhHHhHHHHHHHHHHH---HH
Q 000211 464 KIFELLRELDESKAERESLAKKMDQMECYYEALIQELEENQRHMLGELQNLRNEHSSCLYTVSSAKAEIEAMRLD---VD 540 (1852)
Q Consensus 464 KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQeLEQ~q~q~~~ElqnLr~EhS~~l~tIs~Leaqve~Leee---l~ 540 (1852)
|-.|....+--.+.-.++++....+|+..++-+++.-+.-.......+.+|++|-......|..++..++++.+. +.
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~ 88 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWA 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777778888888999999999999999888753222122222457888888888777777777777776654 55
Q ss_pred HHHHHHhhhHhHHH
Q 000211 541 EQVLRFSEERRDLE 554 (1852)
Q Consensus 541 ~Q~~rF~edl~al~ 554 (1852)
.+.......++.+.
T Consensus 89 ~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 89 AEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544443
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.94 E-value=2.4e+02 Score=27.57 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHH---HhhhHHHHHHHHhHhH
Q 000211 1199 FDQQNSEMIQKIAE---LTSENQALMVSLQEYA 1228 (1852)
Q Consensus 1199 ~~~enSeL~~~~~~---L~~en~a~mv~L~d~k 1228 (1852)
...+|..|.++|+. |-.+|..+-+.+....
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777766 4666666666655544
No 78
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=22.79 E-value=1.1e+02 Score=29.58 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=24.4
Q ss_pred CcccccceeecchhhcccccCCeeeeecCCC
Q 000211 96 SRSSILGEATINLADYADASKPSTVLLPLHG 126 (1852)
Q Consensus 96 sksgiLGEasinlAdY~~a~kp~~VSLPLk~ 126 (1852)
++..+||++.|+|.+... ..+....+||.+
T Consensus 111 ~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~ 140 (142)
T 2chd_A 111 GHNEFIGETRFSLKKLKA-NQRKNFNICLER 140 (142)
T ss_dssp SCEEEEEEEEEEGGGCCT-TCCEEEEEECBC
T ss_pred CCCcEEEEEEEEHHHcCC-CCccEEEEeccc
Confidence 467899999999999775 457888888864
No 79
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.24 E-value=2.2e+02 Score=28.30 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=42.9
Q ss_pred hhhhhhhhh-hcccccchHHHHHHHHHh-hhHhhhhhhhhhcccchhhhHHHHHHH---hhhhhhhHHHHHHHHHHHHHH
Q 000211 1272 QLNEKHCQL-LDLDQQKSELVQLKLLVL-DLESEKSRASEESSSVTSLQSELSEMH---ELLLAVDVRLIFTRTQYEAWV 1346 (1852)
Q Consensus 1272 kLdEk~~qL-~~fd~~~~EL~~Lk~qv~-DLese~S~~~~ktsefk~Ls~hL~El~---e~l~A~dvriiF~KeQYEtkv 1346 (1852)
.|+|.=-+| .-||....|...++.+.. |.+.+..- |+.||. .++-.=-..-.=+|.+||.-|
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~-------------Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI 77 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQ-------------QLAEMQQIRNTVYERELTHRKMKDAYEEEI 77 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444 557777778888887775 77777443 444443 222222233344689999999
Q ss_pred HHHHHHHhhchh
Q 000211 1347 EELVQQVYSTDR 1358 (1852)
Q Consensus 1347 qEL~~QL~~Skk 1358 (1852)
.-|+.+|..-+.
T Consensus 78 ~rLr~eLe~r~~ 89 (92)
T 3vp9_A 78 KHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHHcCC
Confidence 999999986554
No 80
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.15 E-value=1.5e+02 Score=29.11 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 000211 691 IYLDVFSKTLQKTLLEASGEIRLMKERMDELSHQLE 726 (1852)
Q Consensus 691 i~~~vfs~~l~et~~~a~~~i~~mker~~~l~~ql~ 726 (1852)
=||++...-.|-++.+|+.+.+.+..+|..|.-.+.
T Consensus 28 ~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~ 63 (83)
T 1uii_A 28 QYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIA 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999988776653
No 81
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.14 E-value=2.2e+02 Score=30.11 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=56.2
Q ss_pred HHhhhhhHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHHhhhhcccchhhhHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Q 000211 784 LTQKLSEWESLMMDFKSFQSKYEAIAAEKTELANLLEKESLENGNLRRETSLLQKELETVKIDFDELASVNKNLQRTINN 863 (1852)
Q Consensus 784 l~~k~~e~e~~v~e~~~~esky~ac~~e~~~l~~ll~ke~l~~~~l~~e~~~~~~~~~~~k~~~~~~~s~~~~lq~~~~~ 863 (1852)
|.+.+.++-.++. .|-++.++...+|..|...|+.- +...+..+..+...+++-|.+++...+++..|..-+.+
T Consensus 73 l~~~veeA~~~L~---eYn~rL~~E~~dR~~L~~~L~~~---~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 73 LSKTVDEACLLLA---EYNGRLAAELEDRRQLARMLVEY---TQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555555555544 45788999999999999988764 45667788888899999999999988888877665443
No 82
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.10 E-value=1.5e+02 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=16.1
Q ss_pred HHhHHHHHHHhhhhHHHhhHHHHHhhhhhhhhhhhh
Q 000211 1245 LQSLRDELQSERSLRDELKNVVTDLTSQLNEKHCQL 1280 (1852)
Q Consensus 1245 L~Sl~eEL~~ersLreeLE~tV~~L~skLdEk~~qL 1280 (1852)
+..+..++..++..|..+|.....+-..|.++-+.|
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 83
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=21.94 E-value=1.4e+02 Score=28.71 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=26.0
Q ss_pred cccccceeecchhhcccccCCeeeeecCCCCCCCC
Q 000211 97 RSSILGEATINLADYADASKPSTVLLPLHGGDSGT 131 (1852)
Q Consensus 97 ksgiLGEasinlAdY~~a~kp~~VSLPLk~cnsGt 131 (1852)
+..+||++.|+|++.... ....-+||...+.|.
T Consensus 106 ~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 106 ESEFLGEILIELETALLD--DEPHWYKLQTHDSGP 138 (141)
T ss_dssp CBCCCEEEEEEGGGCCCS--SEEEEEECBCCSSCC
T ss_pred CCceEEEEEEEccccCCC--CCCceEECcccccCC
Confidence 488999999999997653 367788898777663
No 84
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.68 E-value=4.2e+02 Score=26.02 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=47.6
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHH
Q 000211 1048 ENRALMVALQDKSEESVKLALEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSEL 1122 (1852)
Q Consensus 1048 En~al~~slqdK~ees~~~~~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeL 1122 (1852)
+..++-..|++-..+-..+..||..|..--..+..++.+...-.+.+...-...-.+.|..+.++..|.++..-|
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666666666666666666666666666666666666666666666666666655
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.57 E-value=3.6e+02 Score=26.48 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=55.8
Q ss_pred HHHHhHHHhhHhhhHHHHHHHHhhhhhHhhHhhhhhhhhhhhhhhhhhhHhhHHHHHHHHhhhHhhhhhHHhhhhhhHHH
Q 000211 1068 LEVDSFKQSFQSLHDELLVERSLRDDLKSAVSDITSQLSAKHSQLLDFDQQKSELIQKTAVLTKENQDLMVSLQNKSEEA 1147 (1852)
Q Consensus 1068 ~El~slK~s~qSLhdEl~aersl~edl~~~vsdLaSEL~eK~~sL~sfd~enqeLl~~~~~dlEea~sl~~~Lls~sEe~ 1147 (1852)
-+++.|...|+.+..+...++.-...++..-+.+..++..+......++.+-.+ +-.++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~---------------------~w~ey 62 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ---------------------YQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH---------------------HHHHH
Confidence 356667777777777777766666666666666666655554444333332222 12223
Q ss_pred HHHHHHHHhHhhhhhhhhhhhhccccchHHHHhh
Q 000211 1148 AKLAVELDSVRNSLQSVHDELHGERSLSDELKSR 1181 (1852)
Q Consensus 1148 ~k~A~t~~q~e~~lqeL~~eL~~~~~~~e~LQsk 1181 (1852)
..+....+.+.+-+.||.-+++-...+++.|+++
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K~ 96 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444566666777777777777777777777664
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.54 E-value=2.1e+02 Score=25.68 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000211 463 GKIFELLRELDESKAERESLAKKMDQMECYYEALIQE 499 (1852)
Q Consensus 463 ~KI~eL~~EIE~yk~drEeLe~qMeQL~ldYE~LkQe 499 (1852)
+.|.+|-.+.+.+..+...|..++.+|...+..|++.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777766664
No 87
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=20.00 E-value=3.2e+02 Score=30.03 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCcccccceeecc-hhhcccccCCeeeeecCCCCC----CCCeEEEEEeeec
Q 000211 95 SSRSSILGEATIN-LADYADASKPSTVLLPLHGGD----SGTILHVTVQLLT 141 (1852)
Q Consensus 95 SsksgiLGEasin-lAdY~~a~kp~~VSLPLk~cn----sGtvLHVtIQ~l~ 141 (1852)
.++..++|++.|+ +.+..+...+...-+||.... ...-+++.+....
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP 149 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred CCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc
Confidence 4578899999995 666666555555566664322 1235677776653
Done!