Query 000212
Match_columns 1850
No_of_seqs 752 out of 1919
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 2.3E-68 5.1E-73 712.8 22.3 430 249-687 158-599 (904)
2 KOG0958 DNA damage-responsive 100.0 1.6E-54 3.5E-59 526.0 15.1 214 307-549 92-306 (690)
3 PF08429 PLU-1: PLU-1-like pro 100.0 1.1E-40 2.4E-45 403.8 34.4 318 728-1055 1-334 (335)
4 PF08429 PLU-1: PLU-1-like pro 100.0 4E-34 8.8E-39 346.6 33.9 308 885-1205 2-335 (335)
5 PF02373 JmjC: JmjC domain, hy 100.0 2.9E-29 6.2E-34 257.0 6.1 114 419-535 1-114 (114)
6 smart00501 BRIGHT BRIGHT, ARID 99.7 1E-17 2.2E-22 166.3 9.4 91 99-191 2-92 (93)
7 smart00545 JmjN Small domain f 99.7 4.3E-18 9.3E-23 141.7 3.4 42 29-70 1-42 (42)
8 PF01388 ARID: ARID/BRIGHT DNA 99.6 9.3E-16 2E-20 152.0 8.7 86 100-187 7-92 (92)
9 PF02375 JmjN: jmjN domain; I 99.5 9.2E-15 2E-19 116.2 1.4 34 31-64 1-34 (34)
10 PF02928 zf-C5HC2: C5HC2 zinc 99.3 5.6E-13 1.2E-17 118.7 4.3 54 629-682 1-54 (54)
11 COG5034 TNG2 Chromatin remodel 99.3 2.1E-12 4.5E-17 143.6 7.7 105 1649-1755 160-270 (271)
12 smart00558 JmjC A domain famil 99.2 1.2E-11 2.5E-16 111.8 4.4 57 390-449 1-57 (57)
13 KOG1973 Chromatin remodeling p 99.0 1E-10 2.2E-15 138.0 3.4 54 1703-1757 213-270 (274)
14 KOG2744 DNA-binding proteins B 99.0 3.3E-10 7.2E-15 142.4 7.6 91 99-191 163-254 (512)
15 KOG1244 Predicted transcriptio 98.8 2.2E-09 4.7E-14 119.9 2.0 48 248-295 283-330 (336)
16 KOG0825 PHD Zn-finger protein 98.7 3.2E-09 7E-14 131.4 1.6 51 247-297 216-267 (1134)
17 KOG1246 DNA-binding protein ju 98.6 3.4E-08 7.3E-13 134.7 6.3 177 389-573 604-789 (904)
18 PF00628 PHD: PHD-finger; Int 98.4 7.5E-08 1.6E-12 85.1 0.3 44 1711-1754 1-50 (51)
19 PF00628 PHD: PHD-finger; Int 98.2 5.6E-07 1.2E-11 79.5 1.2 48 248-295 1-50 (51)
20 smart00249 PHD PHD zinc finger 98.1 1.5E-06 3.2E-11 74.6 2.3 42 1711-1752 1-47 (47)
21 cd04718 BAH_plant_2 BAH, or Br 98.1 1.8E-06 3.9E-11 91.5 2.7 28 270-297 1-28 (148)
22 KOG4299 PHD Zn-finger protein 98.0 2.1E-06 4.5E-11 107.3 2.4 50 246-295 253-304 (613)
23 KOG1632 Uncharacterized PHD Zn 97.9 9.8E-07 2.1E-11 107.2 -3.1 61 1453-1513 62-124 (345)
24 KOG1512 PHD Zn-finger protein 97.9 5.6E-06 1.2E-10 93.5 2.0 47 247-295 315-362 (381)
25 KOG2510 SWI-SNF chromatin-remo 97.8 1.9E-05 4.1E-10 96.0 5.9 93 85-189 282-374 (532)
26 smart00249 PHD PHD zinc finger 97.7 2.3E-05 4.9E-10 67.2 3.0 46 248-293 1-47 (47)
27 KOG4443 Putative transcription 97.5 3.4E-05 7.4E-10 96.7 1.9 49 247-295 69-117 (694)
28 KOG1245 Chromatin remodeling c 97.4 3.1E-05 6.6E-10 107.8 -0.2 52 246-297 1108-1159(1404)
29 KOG1973 Chromatin remodeling p 97.2 0.00014 2.9E-09 86.6 2.2 50 1448-1502 216-268 (274)
30 KOG0957 PHD finger protein [Ge 97.2 0.00011 2.4E-09 88.6 1.0 48 246-293 544-595 (707)
31 KOG2131 Uncharacterized conser 96.3 0.0056 1.2E-07 72.8 6.1 106 419-540 201-306 (427)
32 KOG4323 Polycomb-like PHD Zn-f 96.1 0.002 4.3E-08 80.0 1.1 49 1708-1756 170-225 (464)
33 KOG1632 Uncharacterized PHD Zn 96.1 0.0018 3.9E-08 79.4 0.4 54 1704-1757 55-115 (345)
34 PF13621 Cupin_8: Cupin-like d 96.0 0.0057 1.2E-07 71.3 4.2 110 417-538 132-248 (251)
35 KOG0383 Predicted helicase [Ge 95.9 0.0029 6.2E-08 82.7 1.4 46 246-294 47-92 (696)
36 KOG0955 PHD finger protein BR1 95.8 0.0047 1E-07 83.7 2.6 54 243-298 216-271 (1051)
37 KOG2130 Phosphatidylserine-spe 95.2 0.014 3E-07 68.2 3.4 134 401-542 165-303 (407)
38 COG5141 PHD zinc finger-contai 94.6 0.017 3.8E-07 70.4 2.2 54 242-297 189-244 (669)
39 KOG0994 Extracellular matrix g 94.4 30 0.00065 47.7 34.2 45 949-993 1489-1535(1758)
40 KOG4323 Polycomb-like PHD Zn-f 94.4 0.015 3.2E-07 72.6 1.0 52 246-297 168-225 (464)
41 COG5034 TNG2 Chromatin remodel 93.9 0.028 6.1E-07 64.4 2.0 41 252-295 226-269 (271)
42 KOG1512 PHD Zn-finger protein 93.5 0.028 6E-07 64.6 0.9 45 1713-1757 319-365 (381)
43 PF13831 PHD_2: PHD-finger; PD 93.4 0.018 3.8E-07 47.6 -0.6 32 1722-1753 3-36 (36)
44 KOG2752 Uncharacterized conser 93.3 0.042 9.1E-07 64.5 2.0 31 1710-1740 129-166 (345)
45 KOG0994 Extracellular matrix g 93.2 27 0.00059 48.1 26.5 26 494-519 1135-1160(1758)
46 KOG1844 PHD Zn-finger proteins 92.8 0.048 1E-06 71.0 1.7 52 1706-1757 83-137 (508)
47 KOG0825 PHD Zn-finger protein 92.4 0.07 1.5E-06 68.5 2.3 49 1709-1757 215-268 (1134)
48 KOG0954 PHD finger protein [Ge 91.3 0.15 3.2E-06 65.6 3.4 48 1708-1755 270-321 (893)
49 KOG0954 PHD finger protein [Ge 88.3 0.19 4.1E-06 64.8 1.1 49 246-296 271-321 (893)
50 KOG0955 PHD finger protein BR1 88.1 0.4 8.6E-06 65.9 3.9 53 1705-1757 216-271 (1051)
51 KOG1356 Putative transcription 87.3 0.37 8.1E-06 63.4 2.9 111 450-563 740-859 (889)
52 PF07227 DUF1423: Protein of u 85.5 2.2 4.8E-05 53.5 7.9 140 1355-1502 22-192 (446)
53 KOG4299 PHD Zn-finger protein 82.8 0.63 1.4E-05 59.9 1.8 82 1422-1503 221-306 (613)
54 PF13831 PHD_2: PHD-finger; PD 81.3 0.43 9.3E-06 39.6 -0.3 34 259-294 2-36 (36)
55 PF08007 Cupin_4: Cupin superf 80.2 2.9 6.4E-05 51.4 6.3 106 414-544 112-218 (319)
56 KOG0383 Predicted helicase [Ge 78.1 0.91 2E-05 60.2 1.1 52 1446-1501 42-93 (696)
57 KOG0956 PHD finger protein AF1 76.0 1.8 3.9E-05 55.9 2.7 47 1709-1755 6-57 (900)
58 KOG1473 Nucleosome remodeling 75.8 1.4 3.1E-05 59.5 1.9 48 245-295 343-390 (1414)
59 KOG2752 Uncharacterized conser 75.8 1.4 3E-05 52.4 1.6 33 1450-1482 127-165 (345)
60 PF13639 zf-RING_2: Ring finge 75.8 0.46 9.9E-06 40.8 -1.7 41 1453-1499 2-43 (44)
61 KOG0956 PHD finger protein AF1 75.4 1.3 2.8E-05 57.1 1.2 46 248-295 7-56 (900)
62 KOG1245 Chromatin remodeling c 73.9 0.98 2.1E-05 64.6 -0.3 53 1450-1503 1107-1159(1404)
63 cd04718 BAH_plant_2 BAH, or Br 73.8 2.7 6E-05 45.6 3.1 32 1476-1508 2-33 (148)
64 KOG0957 PHD finger protein [Ge 71.9 8.7 0.00019 48.2 7.0 54 1453-1506 546-602 (707)
65 PF15499 Peptidase_C98: Ubiqui 67.7 5.2 0.00011 46.9 3.7 190 1322-1542 14-239 (275)
66 COG5243 HRD1 HRD ubiquitin lig 62.8 6.5 0.00014 47.7 3.5 48 1449-1501 285-342 (491)
67 PF07227 DUF1423: Protein of u 59.6 6.9 0.00015 49.3 3.0 48 1710-1757 130-194 (446)
68 KOG4443 Putative transcription 59.1 3.4 7.4E-05 53.6 0.4 62 1453-1517 20-83 (694)
69 KOG1244 Predicted transcriptio 58.2 4.6 0.0001 47.1 1.1 53 1446-1499 276-328 (336)
70 PF11793 FANCL_C: FANCL C-term 56.4 4.1 8.8E-05 39.0 0.3 49 1453-1501 4-63 (70)
71 KOG4628 Predicted E3 ubiquitin 55.6 11 0.00025 46.4 3.9 46 1452-1501 230-275 (348)
72 COG5219 Uncharacterized conser 52.4 2.9 6.4E-05 55.5 -1.7 91 1398-1500 1421-1519(1525)
73 PHA03247 large tegument protei 49.8 1.4E+03 0.031 36.0 28.2 89 778-893 1318-1415(3151)
74 PF15446 zf-PHD-like: PHD/FYVE 49.4 8.2 0.00018 42.6 1.2 48 248-295 1-59 (175)
75 KOG2910 Uncharacterized conser 48.6 3E+02 0.0066 31.4 12.9 47 969-1015 119-165 (209)
76 KOG1829 Uncharacterized conser 48.0 21 0.00047 46.8 4.9 33 1450-1482 339-374 (580)
77 KOG0495 HAT repeat protein [RN 47.7 6.8E+02 0.015 33.9 17.5 164 906-1109 394-576 (913)
78 PF08580 KAR9: Yeast cortical 43.9 1.1E+03 0.023 32.7 22.4 119 826-961 31-174 (683)
79 COG5415 Predicted integral mem 43.1 18 0.0004 41.0 2.7 33 1723-1757 192-225 (251)
80 PRK03564 formate dehydrogenase 41.5 1.1E+02 0.0023 37.8 9.0 38 1450-1500 186-233 (309)
81 PF12678 zf-rbx1: RING-H2 zinc 40.4 9.7 0.00021 36.7 0.1 41 1454-1499 22-72 (73)
82 PF14446 Prok-RING_1: Prokaryo 39.8 15 0.00033 33.4 1.2 32 246-277 5-37 (54)
83 KOG2626 Histone H3 (Lys4) meth 39.1 20 0.00044 46.0 2.6 48 1708-1755 19-76 (544)
84 PF06008 Laminin_I: Laminin Do 38.1 3.5E+02 0.0076 32.5 12.8 43 828-870 53-96 (264)
85 COG5141 PHD zinc finger-contai 37.8 13 0.00029 46.6 0.7 43 1713-1755 198-243 (669)
86 COG5415 Predicted integral mem 36.9 24 0.00052 40.1 2.4 34 1465-1503 191-224 (251)
87 cd00162 RING RING-finger (Real 36.9 9.2 0.0002 31.8 -0.6 41 1454-1500 2-42 (45)
88 PF00249 Myb_DNA-binding: Myb- 36.7 53 0.0011 28.7 4.1 38 134-183 11-48 (48)
89 PF08580 KAR9: Yeast cortical 36.0 4E+02 0.0087 36.6 14.0 32 964-995 24-55 (683)
90 COG1340 Uncharacterized archae 35.6 6.4E+02 0.014 31.0 14.0 128 855-992 91-220 (294)
91 KOG1844 PHD Zn-finger proteins 35.6 17 0.00038 47.5 1.4 50 1450-1501 85-134 (508)
92 KOG1886 BAH domain proteins [T 33.5 41 0.00089 43.0 4.0 54 1703-1756 165-219 (464)
93 PF14446 Prok-RING_1: Prokaryo 33.4 23 0.0005 32.3 1.3 32 1451-1482 5-37 (54)
94 PF07496 zf-CW: CW-type Zinc F 33.3 27 0.00058 31.2 1.8 30 1722-1752 2-35 (50)
95 KOG2114 Vacuolar assembly/sort 33.0 62 0.0013 43.9 5.6 127 1302-1501 754-880 (933)
96 smart00154 ZnF_AN1 AN1-like Zi 32.7 20 0.00044 30.4 0.8 26 629-656 1-27 (39)
97 KOG4548 Mitochondrial ribosoma 31.8 1.3E+02 0.0028 35.8 7.2 118 1297-1442 20-143 (263)
98 PF13341 RAG2_PHD: RAG2 PHD do 30.7 35 0.00075 32.4 2.0 31 1722-1752 29-68 (78)
99 PF13901 DUF4206: Domain of un 30.7 31 0.00068 39.8 2.2 41 246-295 152-197 (202)
100 KOG0517 Beta-spectrin [Cytoske 28.3 2.5E+03 0.054 32.5 22.7 318 765-1138 933-1268(2473)
101 PF12861 zf-Apc11: Anaphase-pr 28.3 24 0.00051 35.2 0.6 44 1454-1500 35-78 (85)
102 KOG0978 E3 ubiquitin ligase in 27.9 59 0.0013 43.8 4.2 96 1392-1507 595-693 (698)
103 PF13085 Fer2_3: 2Fe-2S iron-s 26.3 53 0.0011 34.4 2.7 50 1420-1473 27-76 (110)
104 PHA02929 N1R/p28-like protein; 25.0 29 0.00063 41.0 0.7 46 1450-1500 173-223 (238)
105 PF13901 DUF4206: Domain of un 24.9 45 0.00097 38.6 2.1 68 1422-1502 125-198 (202)
106 KOG1829 Uncharacterized conser 24.7 24 0.00052 46.5 -0.1 16 1467-1482 532-547 (580)
107 PF11793 FANCL_C: FANCL C-term 24.5 7.4 0.00016 37.2 -3.5 48 248-295 4-63 (70)
108 PF04216 FdhE: Protein involve 24.5 31 0.00068 42.0 0.8 46 246-303 172-227 (290)
109 cd00350 rubredoxin_like Rubred 23.7 44 0.00094 27.3 1.2 23 1468-1501 3-25 (33)
110 PF07649 C1_3: C1-like domain; 22.9 27 0.00058 27.7 -0.1 25 1714-1738 6-30 (30)
111 PF13832 zf-HC5HC2H_2: PHD-zin 22.9 31 0.00067 35.6 0.3 31 1708-1740 55-87 (110)
112 COG1791 Uncharacterized conser 20.9 58 0.0013 36.4 1.9 41 498-543 114-161 (181)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=2.3e-68 Score=712.81 Aligned_cols=430 Identities=43% Similarity=0.852 Sum_probs=361.5
Q ss_pred hhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCcccccccC----CCCCCCccCC-cccchHhHHHHHHHHhh
Q 000212 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS----DKDSFGFVPG-KRYTVESFRRVADRAKK 323 (1850)
Q Consensus 249 C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~----~~~~fGF~~g-k~ysL~~F~~~ad~~k~ 323 (1850)
|..|.++..+ .+++||+|++.||.+|+.||++.+|+|+|.|+.|+.+ ....|||.+| ..||+..|.+++++++.
T Consensus 158 ~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~ 236 (904)
T KOG1246|consen 158 CNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKK 236 (904)
T ss_pred hhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhc
Confidence 4556666555 4449999999999999999999999999999999876 3467899999 69999999999999999
Q ss_pred hccCCCC---cchhhhHhhhHhHhccCCCccccccccCCCCCCcCCCCCCcCCCCCCCccccccccccCCCcccCCCCCc
Q 000212 324 KRFRSGS---ASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKL 400 (1850)
Q Consensus 324 ~~F~~~~---~~~~~~E~efW~~v~~~~~~v~V~yG~Di~s~~~gSgFp~~~~~~~~~~~~~~~~~y~~~~WNLnnlp~~ 400 (1850)
.||.... .+.+.+|++||++|......++|.||+|+.+..+|||||......... ...++|+.++|||||+|.+
T Consensus 237 ~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~---~~~~~y~~s~wnL~~i~~~ 313 (904)
T KOG1246|consen 237 DYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLG---SEAEKYSNSGWNLNNIPRL 313 (904)
T ss_pred cccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCC---cchhhhccCcccccccccC
Confidence 9998653 336799999999999998999999999999999999999754322111 1236899999999999999
Q ss_pred cchhhhhccccCCCcccceeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCcccCChh
Q 000212 401 KGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPD 480 (1850)
Q Consensus 401 ~~slL~~~~~~i~Gv~~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p~ 480 (1850)
++|+|+|.+.+|+||++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||++|++..|+++..+||
T Consensus 314 ~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~~~pd 393 (904)
T KOG1246|consen 314 EGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFIEQPD 393 (904)
T ss_pred CccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccCchhhhhCCCceeecccCCccEEEEcCCccceeecccccceeecccCCCCchhhhhhhHHHHHhhCCCCCC
Q 000212 481 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVL 560 (1850)
Q Consensus 481 ~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~~~~~~y~~~~~~~~f 560 (1850)
++++++++++|..|.++|||||+++|+||+||||||++||+|||+|||++|+|||||.+|+++|+.++++|+...+.++|
T Consensus 394 ~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lf 473 (904)
T KOG1246|consen 394 LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLF 473 (904)
T ss_pred cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCCCCCCCCCCCcc--ccccccccccc
Q 000212 561 SHEELLCVVAKVSD-LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKS-TPMGPRKCPEYVGTEE--DPTCIICRQYL 636 (1850)
Q Consensus 561 s~~~Ll~~~a~~~~-~~~~~~~~l~~~l~~~~~~E~~~r~~l~~~gi~~~-~~~~~~~~~~~~~~~~--~~~C~~C~~~~ 636 (1850)
||++|+..+|.... +...+.................++...+..+++.. ++......+ ++ +++|..|+++|
T Consensus 474 s~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~c~~ck~~~ 548 (904)
T KOG1246|consen 474 SHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKYERYLLESLP-----DDMLERQCEACKRNC 548 (904)
T ss_pred CHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHHHHHHHHhcc-----chhhHHHHHHhcccH
Confidence 99999999997642 11111000000010011111111111111111111 100001111 13 68999999999
Q ss_pred hhhccccccCCCceeehhchhhhccCCCCceEEEEEcCHHHHHHHHHHHhc
Q 000212 637 YLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 687 (1850)
Q Consensus 637 fls~v~c~~~~~~~~CL~h~~~~c~c~~~~~~l~yRy~~~eL~~l~~~~~~ 687 (1850)
|++++.|.|.+.++.|+.|..++|+|+...++++|||++++|..++.+++.
T Consensus 549 ~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~ 599 (904)
T KOG1246|consen 549 FLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQL 599 (904)
T ss_pred hhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhh
Confidence 999999999889999999999999999999999999999999999999855
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-54 Score=526.04 Aligned_cols=214 Identities=39% Similarity=0.724 Sum_probs=191.0
Q ss_pred cccchHhHHHHHHHHhhhccCCC-CcchhhhHhhhHhHhccCCCccccccccCCCCCCcCCCCCCcCCCCCCCccccccc
Q 000212 307 KRYTVESFRRVADRAKKKRFRSG-SASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWN 385 (1850)
Q Consensus 307 k~ysL~~F~~~ad~~k~~~F~~~-~~~~~~~E~efW~~v~~~~~~v~V~yG~Di~s~~~gSgFp~~~~~~~~~~~~~~~~ 385 (1850)
+.|++.+|+++|+. .+|-..+ ....+++|+.||+.+.. +...||||+.+++|.
T Consensus 92 kam~v~q~r~lAns--~~y~tpr~~~d~~dle~kYWKnltf----~~PiYGaD~~gSi~~-------------------- 145 (690)
T KOG0958|consen 92 KAMTVRQFRDLANS--DKYCTPRGSQDFEDLEQKYWKNLTF----DSPIYGADINGSIYD-------------------- 145 (690)
T ss_pred cccChhhhhhhhhh--cccCCCcccccHHHHHHHHHhcccC----CCCcccccCCCccCc--------------------
Confidence 45778888888876 2233333 45678999999999984 568899999977662
Q ss_pred cccCCCcccCCCCCccchhhhhccccCCCcccceeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHH
Q 000212 386 EYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEK 465 (1850)
Q Consensus 386 ~y~~~~WNLnnlp~~~~slL~~~~~~i~Gv~~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~ 465 (1850)
|....||+++|+..-+- .+.+..|.|||||+||.||+.+||+||+||+.||||||+|||+||.||+||++|.++||+
T Consensus 146 -~~~~~WNi~~L~tild~--~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfek 222 (690)
T KOG0958|consen 146 -EDLDEWNIARLDTILDL--EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEK 222 (690)
T ss_pred -ccccccccccccchhch--hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHH
Confidence 33678999999874321 578888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcccCChhhhhhhccccCchhhhhCCCceeecccCCccEEEEcCCccceeecccccceeecccCCCCchhhhh
Q 000212 466 VMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGG 545 (1850)
Q Consensus 466 ~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~ 545 (1850)
++.+.+|+...+|++||+|++++++|.+|+++|||+++++|++|||+||||++||+|||+||||+|++|||++.|++||.
T Consensus 223 la~~~fp~~~~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK 302 (690)
T KOG0958|consen 223 LASELFPDSSQGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGK 302 (690)
T ss_pred HHHhhCCccccCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHH
Q 000212 546 FGAD 549 (1850)
Q Consensus 546 ~~~~ 549 (1850)
.|..
T Consensus 303 ~a~~ 306 (690)
T KOG0958|consen 303 QALL 306 (690)
T ss_pred cccc
Confidence 7663
No 3
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.1e-40 Score=403.78 Aligned_cols=318 Identities=24% Similarity=0.379 Sum_probs=290.8
Q ss_pred HHHHHhHHHHh--ccCCChhHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCCC-----C
Q 000212 728 EQWLSCSLKVL--QGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPG-----S 800 (1850)
Q Consensus 728 ~~W~~k~~~~L--~~~~~l~~L~~LL~EaE~~~~p~~e~d~lr~l~~~l~eAe~W~e~a~~c~s~~q~~~~~k~-----~ 800 (1850)
+.|.++++++| ..+++++.|++||+|||+++||.+ ++|+.|+..+.+|+.|++.|+++++++++.++... +
T Consensus 1 d~W~~k~~~~l~~~~k~~L~~l~~Ll~e~e~~~~~~~--~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~ 78 (335)
T PF08429_consen 1 DTWAEKVKEALEESPKPSLKELRSLLSEGEKIPFPLP--ELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQK 78 (335)
T ss_pred ChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccccc
Confidence 47999999999 556789999999999999999964 45577777777899999999999999999876653 3
Q ss_pred CCCcccHHHHHhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHhhcCCCcccccchHHH
Q 000212 801 DSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEINAALSA--CSKISELELLYSRASGLPICIVESEKLS 877 (1850)
Q Consensus 801 ~~~kl~leeL~~ll~-~~~Lpc~~pe~~~Lke~l~~ve~~~~ea~~aL~~--~~~~~eLe~LLe~g~~l~V~lpEl~~L~ 877 (1850)
+++++++++|+.|++ +.+|||++||+.+|+++++++++|+.+|+.+|++ ..++++++.||++|++|+|++||++.|+
T Consensus 79 ~~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~ 158 (335)
T PF08429_consen 79 SRNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLR 158 (335)
T ss_pred ccccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHH
Confidence 568899999999998 9999999999999999999999999999999987 4679999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCcch----HHHHHHHHHHHHHHHHHHHHhhc-CCCHH
Q 000212 878 QRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET----DMLLKMIGQAESCRARCSEALRG-SMSLK 952 (1850)
Q Consensus 878 ~rleqak~Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~Ea~~l~v~~Pe~----~~Lqell~~aE~we~kA~~lL~~-~~sl~ 952 (1850)
.++++.+ |+++|+.++.. +..+||++|+.|+++|..+++ |.. ..|+++++.|+.|+++|+.+|+. .++++
T Consensus 159 ~~l~~~~-W~~~~~~~~~~--~~~~tL~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~ 233 (335)
T PF08429_consen 159 RRLEQLE-WLEEAREILSD--PDRLTLDELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLE 233 (335)
T ss_pred HHHHHHH-HHHHHHHHhcc--ccCCcHHHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 9999985 99999999863 236899999999999999984 443 68899999999999999999994 59999
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCChhhHHHHH
Q 000212 953 TVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVEL 1032 (1850)
Q Consensus 953 eLe~ll~e~~~iPv~lpel~~Lk~~l~ka~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~l~el~~LE~~L 1032 (1850)
+|++|+.++.+|||++|++..|++++.+|++|+++++.++.. .++.+|++++|++|+.+|+.|+|.++++++||.++
T Consensus 234 ~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~ 310 (335)
T PF08429_consen 234 QLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELVAESEELPVKLEELSDLEKQL 310 (335)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999752 25789999999999999999999999999999999
Q ss_pred HHhh-hHHHHHHhhcCCCCHHHHH
Q 000212 1033 KKAH-CREKALKACDTKMPLDFIR 1055 (1850)
Q Consensus 1033 ~~a~-W~eka~k~f~kk~sL~~L~ 1055 (1850)
.+++ |+++++++|+++|+.+.|.
T Consensus 311 ~~~~~W~~~~~k~F~k~ns~~~ll 334 (335)
T PF08429_consen 311 KRAEDWMEKAKKLFLKKNSPLHLL 334 (335)
T ss_pred HHHHHHHHHHHHHhcccCchhhhh
Confidence 9998 9999999999999988764
No 4
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=4e-34 Score=346.60 Aligned_cols=308 Identities=26% Similarity=0.460 Sum_probs=286.4
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCcch-HHHHHHHHHHHHHHHHHHHHhhc----------------
Q 000212 885 VWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET-DMLLKMIGQAESCRARCSEALRG---------------- 947 (1850)
Q Consensus 885 ~Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~Ea~~l~v~~Pe~-~~Lqell~~aE~we~kA~~lL~~---------------- 947 (1850)
.|.++++++|+ .+.+++|.+++.|+.||+...+.+|+. ..|+..+..|+.|.++|+.+|..
T Consensus 2 ~W~~k~~~~l~--~~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~~ 79 (335)
T PF08429_consen 2 TWAEKVKEALE--ESPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQKS 79 (335)
T ss_pred hhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCccccccc
Confidence 59999999998 567899999999999999999888877 88999999999999999999954
Q ss_pred --CCCHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCCh
Q 000212 948 --SMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDL 1025 (1850)
Q Consensus 948 --~~sl~eLe~ll~e~~~iPv~lpel~~Lk~~l~ka~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~l~el 1025 (1850)
..++++|.+|++++.++||.+|++..|++.+..+++|+.++++++. .+..+.++++++|++.|.+|+|++|++
T Consensus 80 ~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~-----~~~~~~~~~le~Ll~~g~s~~v~lpel 154 (335)
T PF08429_consen 80 RNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALS-----DPESPSLEELEELLEEGESFGVDLPEL 154 (335)
T ss_pred cccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHh-----ccccCCHHHHHHHHHhcccCceeChhH
Confidence 1799999999999999999999999999999999999999999996 235678999999999999999999999
Q ss_pred hhHHHHHHHhhhHHHHHHhhcCC--CCHHHHHHHHHHhhccc-hhHHHHHhhhhHHHHHHHHHHHHHHhHhc-cccchhh
Q 000212 1026 PLVEVELKKAHCREKALKACDTK--MPLDFIRQVTAEAVILQ-IEREKLFIDLSGVLAAAMRWEERAADILI-HKAQMCE 1101 (1850)
Q Consensus 1026 ~~LE~~L~~a~W~eka~k~f~kk--~sL~~L~~lL~~g~~l~-~~vE~~~~el~~ll~~a~~WeekA~~~L~-~r~~l~~ 1101 (1850)
+.|+..+.+++|.+++..++... .||+.|+.+|+.|..+. +.+++.+++++.++..+..|+++|+.+|. ..+++.+
T Consensus 155 ~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~ 234 (335)
T PF08429_consen 155 DQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQ 234 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999876 89999999999998876 68899999999999999999999999999 4589999
Q ss_pred HHHHHHHhhcccccCCChHHHHHHHHHHHHHHHhhHHhhhhhcccCCCCCCccchhhHHHHHhccccCccccchhHHHHH
Q 000212 1102 FEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEK 1181 (1850)
Q Consensus 1102 le~ii~eaenip~~Lp~~~~Lk~~L~~Ar~Wl~k~~~~~~~~~~~~~~~s~~P~Le~L~~Ll~~~~~LpV~L~E~~~Le~ 1181 (1850)
+++++.++++||+++|+...|++++.+|+.|..+++.+.. ..++.+|++++|+.|++++..|||.+++...|+.
T Consensus 235 Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~------~~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~ 308 (335)
T PF08429_consen 235 LEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLE------QNGSKRPTLDELEELVAESEELPVKLEELSDLEK 308 (335)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999963 1367899999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHH--hh-hhhcc
Q 000212 1182 VINNCERWQNHASSLLQ--DA-RCLLD 1205 (1850)
Q Consensus 1182 ~I~~a~~W~e~a~~~L~--~~-~~Ll~ 1205 (1850)
++.+++.|.+++..+|. || ++||+
T Consensus 309 ~~~~~~~W~~~~~k~F~k~ns~~~ll~ 335 (335)
T PF08429_consen 309 QLKRAEDWMEKAKKLFLKKNSPLHLLE 335 (335)
T ss_pred HHHHHHHHHHHHHHHhcccCchhhhhC
Confidence 99999999999977554 77 88875
No 5
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.95 E-value=2.9e-29 Score=256.98 Aligned_cols=114 Identities=46% Similarity=0.824 Sum_probs=101.0
Q ss_pred eeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCcccCChhhhhhhccccCchhhhhCC
Q 000212 419 WLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENG 498 (1850)
Q Consensus 419 ~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~G 498 (1850)
|+|+||.||+|+||+||+.++||||+|+|++|+||+||++++++|++++++. ....+|+++.+...++.|+.|.++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999988 3456788899999999999999999
Q ss_pred CceeecccCCccEEEEcCCccceeecccccceeeccc
Q 000212 499 VPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF 535 (1850)
Q Consensus 499 Ipv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNf 535 (1850)
||+++++|+|||||||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 6
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.72 E-value=1e-17 Score=166.35 Aligned_cols=91 Identities=30% Similarity=0.512 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHHHhcCCccccccccCCeecchHHHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHH
Q 000212 99 DSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQL 178 (1850)
Q Consensus 99 ~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~ 178 (1850)
++..|+.+|.+||+. +|+++..+|+|+|++||||+||++|+++|||+.|+++++|.+|++.||++... ++++..|+++
T Consensus 2 ~~~~F~~~L~~F~~~-~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~-~~~~~~lk~~ 79 (93)
T smart00501 2 ERVLFLDRLYKFMEE-RGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTS-TSAASSLRKH 79 (93)
T ss_pred cHHHHHHHHHHHHHH-cCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCccc-chHHHHHHHH
Confidence 356899999999976 79999999999999999999999999999999999999999999999998763 4456699999
Q ss_pred HHHhhhcHHHHHh
Q 000212 179 YYKHLYDYEKYYN 191 (1850)
Q Consensus 179 Y~kyL~pYE~~~~ 191 (1850)
|.|||+|||.|.+
T Consensus 80 Y~k~L~~yE~~~~ 92 (93)
T smart00501 80 YERYLLPFERFLR 92 (93)
T ss_pred HHHHhHHHHHHhh
Confidence 9999999999875
No 7
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.71 E-value=4.3e-18 Score=141.70 Aligned_cols=42 Identities=74% Similarity=1.428 Sum_probs=41.2
Q ss_pred CCCccCCCccccCChHHHHHHhHHHHhhcCcEEEcCCCCCCC
Q 000212 29 SGPVYYPTEDEFKDPLEYICKIRAEAERYGICKIVPPKSWKP 70 (1850)
Q Consensus 29 e~Pvf~Pt~eEF~DPl~yi~~I~~~~~kyGi~KIvPP~~w~P 70 (1850)
++|||+||+|||+||++||++|+++|++|||||||||++|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999998
No 8
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.62 E-value=9.3e-16 Score=152.02 Aligned_cols=86 Identities=33% Similarity=0.505 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHhcCCccccccccCCeecchHHHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHHH
Q 000212 100 SKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQLY 179 (1850)
Q Consensus 100 ~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~Y 179 (1850)
+..|+.+|.+||+. +|.++..+|.|+|++||||+||++|.++|||+.|+++++|.+|++.||++...++. ++.|+++|
T Consensus 7 ~~~F~~~L~~f~~~-~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~-~~~L~~~Y 84 (92)
T PF01388_consen 7 REQFLEQLREFHES-RGTPIDRPPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSA-AQQLRQHY 84 (92)
T ss_dssp HHHHHHHHHHHHHH-TTSSSSS-SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcH-HHHHHHHH
Confidence 67899999999977 89999889999999999999999999999999999999999999999998876654 56899999
Q ss_pred HHhhhcHH
Q 000212 180 YKHLYDYE 187 (1850)
Q Consensus 180 ~kyL~pYE 187 (1850)
++||+|||
T Consensus 85 ~~~L~~fE 92 (92)
T PF01388_consen 85 EKYLLPFE 92 (92)
T ss_dssp HHHTHHHH
T ss_pred HHHhHhhC
Confidence 99999998
No 9
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.48 E-value=9.2e-15 Score=116.19 Aligned_cols=34 Identities=68% Similarity=1.370 Sum_probs=27.8
Q ss_pred CccCCCccccCChHHHHHHhHHHHhhcCcEEEcC
Q 000212 31 PVYYPTEDEFKDPLEYICKIRAEAERYGICKIVP 64 (1850)
Q Consensus 31 Pvf~Pt~eEF~DPl~yi~~I~~~~~kyGi~KIvP 64 (1850)
||||||+|||+||++||++|++.|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 10
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.35 E-value=5.6e-13 Score=118.73 Aligned_cols=54 Identities=46% Similarity=0.939 Sum_probs=52.1
Q ss_pred cccccccchhhccccccCCCceeehhchhhhccCCCCceEEEEEcCHHHHHHHH
Q 000212 629 CIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF 682 (1850)
Q Consensus 629 C~~C~~~~fls~v~c~~~~~~~~CL~h~~~~c~c~~~~~~l~yRy~~~eL~~l~ 682 (1850)
|..|++++|||+|+|+|.+++++||.|+.++|+|++++++|+||||++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999998899999999999999999999999999999999875
No 11
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.32 E-value=2.1e-12 Score=143.60 Aligned_cols=105 Identities=24% Similarity=0.504 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHhHhhhccCCcchhhHHhhhhccCCCCcch--hHHhhhccCCCceEEEeccCCCCCCceee
Q 000212 1649 HYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYL--EKELKSLRARSMLYCICRKPYDEKAMIAC 1726 (1850)
Q Consensus 1649 ~~~~~i~~~~~~~~~w~~~~~k~~~~~g~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~yC~C~~~~~~~~mi~C 1726 (1850)
.++..|...+..+..-...+++ ....+.+.+......+.+|..-+... .-..+...+++.+||+|+|+..| .||+|
T Consensus 160 ~~R~n~~~~k~~~p~~~S~r~~-~~t~~sp~v~~t~t~v~e~~~~~s~~~~~vss~d~se~e~lYCfCqqvSyG-qMVaC 237 (271)
T COG5034 160 KKRKNIHNLKRRSPELSSKREV-SFTLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYG-QMVAC 237 (271)
T ss_pred HHHHhhcccccCCcchhhhccC-CccCCCCCcccchhhhhcccCCCCccccCcCccccccCceeEEEecccccc-cceec
Confidence 4445555555444444332222 22223333333334444555433322 22233445788999999998776 79999
Q ss_pred c--CCC-ceEEcccccccCCCC-ceecCCCcCC
Q 000212 1727 Y--QCD-EWYHIDCVKLLSAPE-IYICAACKPQ 1755 (1850)
Q Consensus 1727 d--~C~-~WfH~~Cvgi~~~~~-~~~C~~C~~~ 1755 (1850)
| .|+ ||||+.|||+.++|+ +||||.|++.
T Consensus 238 Dn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 238 DNANCKREWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCCCCchhheeccccccCCCCCCcEeCHHhHhc
Confidence 9 788 999999999999997 9999999863
No 12
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.20 E-value=1.2e-11 Score=111.82 Aligned_cols=57 Identities=39% Similarity=0.572 Sum_probs=54.1
Q ss_pred CCcccCCCCCccchhhhhccccCCCcccceeeecccccccceEecCCCcceeeeeecCCC
Q 000212 390 SPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDP 449 (1850)
Q Consensus 390 ~~WNLnnlp~~~~slL~~~~~~i~Gv~~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~ 449 (1850)
.+||++++|. +++++++++.+++|+++||+|+||.+|+|+||+|++.+ +||+|.|+.
T Consensus 1 ~~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 1 QLNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred CcchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 3799999999 99999999999999999999999999999999999999 999999863
No 13
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=99.03 E-value=1e-10 Score=138.01 Aligned_cols=54 Identities=33% Similarity=0.866 Sum_probs=45.6
Q ss_pred hccCCCceEEEeccCCCCCCceeecC--CC-ceEEcccccccCCC-CceecCCCcCCCC
Q 000212 1703 SLRARSMLYCICRKPYDEKAMIACYQ--CD-EWYHIDCVKLLSAP-EIYICAACKPQAE 1757 (1850)
Q Consensus 1703 ~~~~~~~~yC~C~~~~~~~~mi~Cd~--C~-~WfH~~Cvgi~~~~-~~~~C~~C~~~~~ 1757 (1850)
..+.+++.||+|++... +.||+||+ |. +|||+.||||+.+| ++||||.|+....
T Consensus 213 ~~d~~e~~yC~Cnqvsy-g~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 213 AVDPDEPTYCICNQVSY-GKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccCCCCCEEEEeccccc-ccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 34556789999996655 58999996 99 99999999999887 5999999998654
No 14
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.02 E-value=3.3e-10 Score=142.37 Aligned_cols=91 Identities=32% Similarity=0.516 Sum_probs=83.4
Q ss_pred CchhHHHHHHHHHHHhcCCccccccccCCeecchHHHHHHHhhcCChHhhhcccchHHHHhHhcCCC-ccchhhHHHHHH
Q 000212 99 DSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNR-KISDCARHVLCQ 177 (1850)
Q Consensus 99 ~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~-~~~s~~~~~Lk~ 177 (1850)
+++.|++.+.+||+. +|+++++-|+|+|++||||.||..|+++||++.|+..|+|++|+..|.+|. .+++++ +.|+.
T Consensus 163 ~~eeF~~dl~~f~~~-~~~~~~~iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~~l~~pt~tiTsaa-f~lr~ 240 (512)
T KOG2744|consen 163 SSEEFMEDLRRFMKK-RGTKVKSIPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVIDGLNFPTPTITSAA-FTLRK 240 (512)
T ss_pred cHHHHHHHHHHHHHH-hCCcceeccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhccccCCCcccchHH-HHHHH
Confidence 578899999999987 899999777889999999999999999999999999999999999999998 776644 59999
Q ss_pred HHHHhhhcHHHHHh
Q 000212 178 LYYKHLYDYEKYYN 191 (1850)
Q Consensus 178 ~Y~kyL~pYE~~~~ 191 (1850)
.|.|+|++||.-..
T Consensus 241 ~y~K~L~~ye~~~~ 254 (512)
T KOG2744|consen 241 QYLKLLFEYECEFE 254 (512)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997654
No 15
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.77 E-value=2.2e-09 Score=119.89 Aligned_cols=48 Identities=42% Similarity=1.192 Sum_probs=45.4
Q ss_pred hhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCccccccc
Q 000212 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 248 ~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
.|.+||-+.+.|.+|+||.||+|||||||+|||.+.|.|.|.|.-|+.
T Consensus 283 ~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 488999999999999999999999999999999999999999999974
No 16
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.72 E-value=3.2e-09 Score=131.35 Aligned_cols=51 Identities=43% Similarity=1.011 Sum_probs=48.2
Q ss_pred hhhhcccCCCCCcceeccccCCCc-cccccCCCCCCCCCCCCCcccccccCC
Q 000212 247 QICEQCKSGLHGEVMLLCDRCNKG-WHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1850)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~-yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1850)
-.|.+|...+++|.|||||+|+++ ||+|||+|+|-+||-+.|||++|+..+
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 359999999999999999999999 999999999999999999999998754
No 17
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.61 E-value=3.4e-08 Score=134.73 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=148.2
Q ss_pred CCCcccCCCCCcc-----c-hhhhhccccCCCcccceeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHH
Q 000212 389 NSPWNLNNLPKLK-----G-SILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGA 462 (1850)
Q Consensus 389 ~~~WNLnnlp~~~-----~-slL~~~~~~i~Gv~~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~k 462 (1850)
..||...-.-.++ | +++.|+++.+-||++..+|+..++|.+.-|.|+..+.|+|.+++++.+.||+||.+++..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4566665544433 5 899999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhhCCCcccCChhhhhhhcccc-CchhhhhCCCceeecccCCccEEEEcCCccceeecccccceeecccCCCCc-
Q 000212 463 FEKVMRSSLPDLFDAQPDLLFQLVTML-NPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW- 540 (1850)
Q Consensus 463 fe~~~~~~~p~~~~~~p~~l~~~~~~~-~P~~L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~W- 540 (1850)
+++.+.+.--.+.. ...|. +-..|...+|++++++|++|++|.++.|+|||+...||..+.++|.++...
T Consensus 684 ~~~~~~~~~~~~~~--------~~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNLKYSD--------SSVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhccccccc--------hhccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 99998775332211 12344 556788999999999999999999999999999999999999999999875
Q ss_pred -hhhhhhhHHHHHhhCCCCCCCHHHHHHHHhccC
Q 000212 541 -LPHGGFGADLYQQYHKAAVLSHEELLCVVAKVS 573 (1850)
Q Consensus 541 -l~~g~~~~~~y~~~~~~~~fs~~~Ll~~~a~~~ 573 (1850)
+......+.+........++++..+-|.+|+..
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEKE 789 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhcc
Confidence 445555666666667888899999999999874
No 18
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.37 E-value=7.5e-08 Score=85.07 Aligned_cols=44 Identities=36% Similarity=1.055 Sum_probs=38.6
Q ss_pred EE-EeccCCCCCCceeecCCCceEEcccccccCC-----CCceecCCCcC
Q 000212 1711 YC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA-----PEIYICAACKP 1754 (1850)
Q Consensus 1711 yC-~C~~~~~~~~mi~Cd~C~~WfH~~Cvgi~~~-----~~~~~C~~C~~ 1754 (1850)
|| +|+++.+++.||+||.|+.|||..|+|+... ...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 68 9998777789999999999999999999964 23899999975
No 19
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.17 E-value=5.6e-07 Score=79.54 Aligned_cols=48 Identities=38% Similarity=0.996 Sum_probs=42.8
Q ss_pred hhhcccCCCCCcceeccccCCCccccccCCCCCC--CCCCCCCccccccc
Q 000212 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLK--HVPRGNWYCLECLN 295 (1850)
Q Consensus 248 ~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~--~vP~gdW~C~~C~~ 295 (1850)
+|.+|++.++++.|+.||.|+..||++|+.|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889999888899999999999999999999987 66677999999964
No 20
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.07 E-value=1.8e-06 Score=91.50 Aligned_cols=28 Identities=50% Similarity=1.210 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCCCCCCcccccccCC
Q 000212 270 GWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1850)
Q Consensus 270 ~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1850)
|||++||+|||+.||+|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 7999999999999999999999998753
No 22
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.02 E-value=2.1e-06 Score=107.28 Aligned_cols=50 Identities=32% Similarity=0.943 Sum_probs=44.4
Q ss_pred hhhhhcccCCCCCcceeccccCCCccccccCCCC--CCCCCCCCCccccccc
Q 000212 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPP--LKHVPRGNWYCLECLN 295 (1850)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PP--L~~vP~gdW~C~~C~~ 295 (1850)
.+.|..|++...-..+++||+|+.+||++||+|| .+.+|+|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4589999987654567999999999999999999 5889999999999975
No 23
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=97.91 E-value=9.8e-07 Score=107.25 Aligned_cols=61 Identities=21% Similarity=0.474 Sum_probs=53.6
Q ss_pred ccccccCCCCccceeecccccccccccc--CCCccccccccccccCCcccccccccccccCCC
Q 000212 1453 LCMCCESDSKELEFLICSACKDCYHLQC--LRPTEVDRNHAEAYICPYCQYFESESVSQFGGS 1513 (1850)
Q Consensus 1453 ~C~~c~~~~~~~~~i~C~~C~~~yH~~C--v~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~~ 1513 (1850)
.|.|-.....+..|+.|+.|-+|||+.| |++..........|.|.-|.....+....+++.
T Consensus 62 ~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~~~~~l~ 124 (345)
T KOG1632|consen 62 YCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMSESDGLS 124 (345)
T ss_pred hhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhhhhccce
Confidence 6887766666668999999999999999 999999999999999999999988877777666
No 24
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.86 E-value=5.6e-06 Score=93.54 Aligned_cols=47 Identities=34% Similarity=0.960 Sum_probs=41.8
Q ss_pred hhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCccc-cccc
Q 000212 247 QICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCL-ECLN 295 (1850)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~-~C~~ 295 (1850)
..|.+|+...+++.+++||.||+||||||.. |..+|.|.|+|. .|..
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCRE 362 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHH
Confidence 3588899999999999999999999999998 899999999998 3543
No 25
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=97.83 E-value=1.9e-05 Score=96.03 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=77.9
Q ss_pred cccchhhhhhcccCCchhHHHHHHHHHHHhcCCccccccccCCeecchHHHHHHHhhcCChHhhhcccchHHHHhHhcCC
Q 000212 85 TQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSN 164 (1850)
Q Consensus 85 ~Q~ln~L~~~~r~~~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~ 164 (1850)
+-.|-+|... ++++...+.|..|+++ +.+++...|.++.++||||+||..|...||+..|+++| ++++.-|+
T Consensus 282 iTklYelg~q---p~r~~wvDR~raF~ee-~~Sp~t~~p~~gakPldl~rlYvsvke~gg~~~v~knk--rd~a~~lg-- 353 (532)
T KOG2510|consen 282 ITKLYELGGQ---PERKEWVDRLRAFTEE-RASPMTNLPAVGAKPLDLYRLYVSVKEIGGLTQVNKNK--RDLATNLG-- 353 (532)
T ss_pred cccccccccC---cchhhHHHHHHHHHHh-hcCcccccccccccchhHHHHHHHHHHhccceeeccch--hhhhhccc--
Confidence 4556666553 2456788889999977 78888888889999999999999999999999999999 88887776
Q ss_pred CccchhhHHHHHHHHHHhhhcHHHH
Q 000212 165 RKISDCARHVLCQLYYKHLYDYEKY 189 (1850)
Q Consensus 165 ~~~~s~~~~~Lk~~Y~kyL~pYE~~ 189 (1850)
+++.++||.+|.+||+.||--
T Consensus 354 ----ssaa~~l~k~y~~~lf~fec~ 374 (532)
T KOG2510|consen 354 ----SSAASSLKKQYIQYLFAFECK 374 (532)
T ss_pred ----hHHHHHHHHHHHHHHHhhcee
Confidence 445679999999999999853
No 26
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.52 E-value=3.4e-05 Score=96.69 Aligned_cols=49 Identities=39% Similarity=1.059 Sum_probs=46.1
Q ss_pred hhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCccccccc
Q 000212 247 QICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
.+|+.||.+.++.++++|+.||-+||+||..||++.||.|.|+|+.|.-
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 4799999999999999999999999999999999999999999998864
No 28
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.42 E-value=3.1e-05 Score=107.81 Aligned_cols=52 Identities=40% Similarity=1.093 Sum_probs=48.3
Q ss_pred hhhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCcccccccCC
Q 000212 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1850)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1850)
...|++|.+....+.|++||+|+.+||+||+.|.+..+|.|+|+||.|....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3569999999988999999999999999999999999999999999998744
No 29
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00014 Score=86.63 Aligned_cols=50 Identities=20% Similarity=0.595 Sum_probs=40.4
Q ss_pred CCCCcccccccCCCCccceeeccc--cc-cccccccCCCccccccccccccCCccccc
Q 000212 1448 SVSMTLCMCCESDSKELEFLICSA--CK-DCYHLQCLRPTEVDRNHAEAYICPYCQYF 1502 (1850)
Q Consensus 1448 ~~~~~~C~~c~~~~~~~~~i~C~~--C~-~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~ 1502 (1850)
-++..+|+|+ ...-.+||.||. |. +|||..|||.+ ..+.+. |-||.|...
T Consensus 216 ~~e~~yC~Cn--qvsyg~Mi~CDn~~C~~eWFH~~CVGL~-~~Pkgk--WyC~~C~~~ 268 (274)
T KOG1973|consen 216 PDEPTYCICN--QVSYGKMIGCDNPGCPIEWFHFTCVGLK-TKPKGK--WYCPRCKAE 268 (274)
T ss_pred CCCCEEEEec--ccccccccccCCCCCCcceEEEeccccc-cCCCCc--ccchhhhhh
Confidence 4567899999 666667999999 99 99999999955 444444 999999543
No 30
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.19 E-value=0.00011 Score=88.63 Aligned_cols=48 Identities=38% Similarity=0.985 Sum_probs=44.7
Q ss_pred hhhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCC----CCccccc
Q 000212 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRG----NWYCLEC 293 (1850)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~g----dW~C~~C 293 (1850)
...|-+|.+..+...+++||.|+..||+.||+|||+..|+. .|.|..|
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 45699999999999999999999999999999999999975 4999999
No 31
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.32 E-value=0.0056 Score=72.85 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=79.8
Q ss_pred eeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCcccCChhhhhhhccccCchhhhhCC
Q 000212 419 WLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENG 498 (1850)
Q Consensus 419 ~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~G 498 (1850)
-.|+|-.+|+++.|.+=...+|---|..| -|.|..+||....++.+ ...+ .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~d----r~gn----lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLAD----RYGN----LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhh----hccC----cC-------Cccccccccccc
Confidence 46999999999999776666666666677 89999999998655543 2222 11 112224566677
Q ss_pred CceeecccCCccEEEEcCCccceeecccccceeecccCCCCc
Q 000212 499 VPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 540 (1850)
Q Consensus 499 Ipv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~W 540 (1850)
.|.+.+.|+|||.|++--|=||.+.|.|-+++.+=|..-+.=
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~n 306 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATN 306 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeeccccccccc
Confidence 888999999999999999999999999999988866554433
No 32
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.11 E-value=0.002 Score=79.99 Aligned_cols=49 Identities=27% Similarity=0.760 Sum_probs=39.6
Q ss_pred CceEEEeccCCCCCCceeecCCCceEEcccccccCCC----C---ceecCCCcCCC
Q 000212 1708 SMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP----E---IYICAACKPQA 1756 (1850)
Q Consensus 1708 ~~~yC~C~~~~~~~~mi~Cd~C~~WfH~~Cvgi~~~~----~---~~~C~~C~~~~ 1756 (1850)
...||.|.++-.+--||+|+.|..|||..|.--...+ | .|+|..|....
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 3578888888776679999999999999998765432 2 89999998653
No 33
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=96.06 E-value=0.0018 Score=79.36 Aligned_cols=54 Identities=35% Similarity=0.845 Sum_probs=45.8
Q ss_pred ccCCCceEEEeccCCCCC-CceeecCCCceEEccc--ccccCC----CCceecCCCcCCCC
Q 000212 1704 LRARSMLYCICRKPYDEK-AMIACYQCDEWYHIDC--VKLLSA----PEIYICAACKPQAE 1757 (1850)
Q Consensus 1704 ~~~~~~~yC~C~~~~~~~-~mi~Cd~C~~WfH~~C--vgi~~~----~~~~~C~~C~~~~~ 1757 (1850)
..+....||.|..+.+++ +|++||.|.+|||++| ||+.+. ++.|+|..|.....
T Consensus 55 ~~a~~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 55 LKALTQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred cHhhhhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 345556799999999985 8999999999999999 999863 46999999997654
No 34
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.99 E-value=0.0057 Score=71.30 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=67.9
Q ss_pred cceeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCccc----CChhhhhhhccccCch
Q 000212 417 VPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFD----AQPDLLFQLVTMLNPS 492 (1850)
Q Consensus 417 ~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~----~~p~~l~~~~~~~~P~ 492 (1850)
..+|+||..+|.+.+|.+. ..+++-+..| .|.|+-+||++...+... +..-. ..-|+ .....-..|.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l~~~-----~~~~~~~~~~~~d~-~~~d~~~~p~ 202 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNLYPR-----PDSHGGTVFSWVDP-DNPDLERFPK 202 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGCTBE-----TTTST-TCBBSS-T-TS--TTT-CG
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCccccccccc-----eecccccceeeeec-cChhhhhhhh
Confidence 5569999999999999987 4577777788 699999999987644211 10000 00000 0000011122
Q ss_pred hhhhCCCceeecccCCccEEEEcCCccceeecc---cccceeecccCCC
Q 000212 493 VLVENGVPVYSVLQEPGNFVITFPRSYHAGFNF---GLNCAEAVNFAPA 538 (1850)
Q Consensus 493 ~L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~---G~n~~eavNfa~~ 538 (1850)
. ..++.+.++++|||.+++-+|-+|.+.|. ++|++.+++|-+.
T Consensus 203 ~---~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 203 F---RKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp G---GG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred h---ccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 1 23489999999999999999999999999 4688777777654
No 35
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.92 E-value=0.0029 Score=82.69 Aligned_cols=46 Identities=37% Similarity=1.001 Sum_probs=41.5
Q ss_pred hhhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCcccccc
Q 000212 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECL 294 (1850)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~ 294 (1850)
.+.|.+|+.+. .+|.||.|..+||++|++||+..+|.|+|.|+.|.
T Consensus 47 ~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 47 QEACRICADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 56799998774 48889999999999999999999999999999993
No 36
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.79 E-value=0.0047 Score=83.67 Aligned_cols=54 Identities=35% Similarity=0.843 Sum_probs=46.9
Q ss_pred chhhhhhhcccCCCCC--cceeccccCCCccccccCCCCCCCCCCCCCcccccccCCC
Q 000212 243 DELDQICEQCKSGLHG--EVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDK 298 (1850)
Q Consensus 243 ~~~~~~C~~C~~~~~~--~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~~ 298 (1850)
.+.|.+|.+|..+.-. +.++.||+|+..+|.+|-. ..-||.|.|.|-.|+.++.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 3457899999998765 8899999999999999998 4568999999999998764
No 37
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.21 E-value=0.014 Score=68.18 Aligned_cols=134 Identities=20% Similarity=0.240 Sum_probs=91.1
Q ss_pred cchhhhhcccc-CCCcccceeeecccccccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCcccCCh
Q 000212 401 KGSILRMVHHN-ITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQP 479 (1850)
Q Consensus 401 ~~slL~~~~~~-i~Gv~~P~lyvGm~fS~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p 479 (1850)
...++.+++.. =| ---|+-+|-..|.+.||++...+..-|-+..| .|.|.-+|+.--..+-++. ++.-.+||
T Consensus 165 ~dDlF~y~g~e~RP--pyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~ 237 (407)
T KOG2130|consen 165 RDDLFQYLGEERRP--PYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQP 237 (407)
T ss_pred hHHHHHhcCcccCC--CceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCC
Confidence 35677777643 11 23499999999999999999999999999988 8999999997643332222 22222344
Q ss_pred hh---hhhhccccCchh-hhhCCCceeecccCCccEEEEcCCccceeecccccceeecccCCCCchh
Q 000212 480 DL---LFQLVTMLNPSV-LVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLP 542 (1850)
Q Consensus 480 ~~---l~~~~~~~~P~~-L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~Wl~ 542 (1850)
+- .++....-.-.- +-.. -.-.-++|.|||.|++--|=.|-++|.-.++|..-|||...=++
T Consensus 238 de~itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 238 DEIITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred cceechhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 32 122111100000 0111 12235789999999999999999999999999999999876554
No 38
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.62 E-value=0.017 Score=70.44 Aligned_cols=54 Identities=31% Similarity=0.903 Sum_probs=46.0
Q ss_pred cchhhhhhhcccCCCC--CcceeccccCCCccccccCCCCCCCCCCCCCcccccccCC
Q 000212 242 EDELDQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1850)
Q Consensus 242 e~~~~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1850)
+++.++.|.+|...+. ...++.||+|+-.-|..|-. +.-+|.|.|+|-+|+.+.
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 3567889999998764 36799999999999999987 557899999999999865
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.45 E-value=30 Score=47.68 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHh--CCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000212 949 MSLKTVELLLQEL--GDFTVNMPELELLKQYHSDAIFWIARLNDILV 993 (1850)
Q Consensus 949 ~sl~eLe~ll~e~--~~iPv~lpel~~Lk~~l~ka~eW~~~a~~ll~ 993 (1850)
.+.++++++.+++ -.||....++..|...++...+=+.+|++||.
T Consensus 1489 adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1489 ADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred CCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5666677666665 55666666777777777666666667777664
No 40
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.38 E-value=0.015 Score=72.58 Aligned_cols=52 Identities=33% Similarity=0.767 Sum_probs=42.7
Q ss_pred hhhhhcccCCCC--CcceeccccCCCccccccCCCCCCC----CCCCCCcccccccCC
Q 000212 246 DQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKH----VPRGNWYCLECLNSD 297 (1850)
Q Consensus 246 ~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~----vP~gdW~C~~C~~~~ 297 (1850)
+..|-+|..|.. ..+||.|++|...||.-|..|+.+. =|.+.|||..|..+.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 445999987754 4689999999999999999988533 466789999998865
No 41
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=93.94 E-value=0.028 Score=64.37 Aligned_cols=41 Identities=39% Similarity=1.028 Sum_probs=33.0
Q ss_pred ccCCCCCcceeccc--cCCC-ccccccCCCCCCCCCCCCCccccccc
Q 000212 252 CKSGLHGEVMLLCD--RCNK-GWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 252 C~~~~~~~~lLlCD--~Cd~-~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
|.+..- ..|+-|| .|.. .||+-|.. |++.|+|-|||+.|..
T Consensus 226 CqqvSy-GqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 226 CQQVSY-GQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred eccccc-ccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 555544 3499999 5655 79999998 8999999999999964
No 42
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.49 E-value=0.028 Score=64.65 Aligned_cols=45 Identities=33% Similarity=0.642 Sum_probs=39.5
Q ss_pred EeccCCCCCCceeecCCCceEEcccccccCCCC-ceecC-CCcCCCC
Q 000212 1713 ICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPE-IYICA-ACKPQAE 1757 (1850)
Q Consensus 1713 ~C~~~~~~~~mi~Cd~C~~WfH~~Cvgi~~~~~-~~~C~-~C~~~~~ 1757 (1850)
||.+|.-...|+.||.|+.=||.-|||+..-|. .|+|. .|+..+.
T Consensus 319 IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~~~~ 365 (381)
T KOG1512|consen 319 ICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCREATL 365 (381)
T ss_pred ccCCcccchheeccccccCCCCccccccccccCccchhhhHHHHhcC
Confidence 899999988999999999999999999999775 99998 4665444
No 43
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.37 E-value=0.018 Score=47.60 Aligned_cols=32 Identities=22% Similarity=0.736 Sum_probs=19.2
Q ss_pred CceeecCCCceEEcccccccCCCC--ceecCCCc
Q 000212 1722 AMIACYQCDEWYHIDCVKLLSAPE--IYICAACK 1753 (1850)
Q Consensus 1722 ~mi~Cd~C~~WfH~~Cvgi~~~~~--~~~C~~C~ 1753 (1850)
.||.|+.|+-.+|.+|-|+...++ .|+|..|+
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 699999999999999999998764 69998874
No 44
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=93.31 E-value=0.042 Score=64.54 Aligned_cols=31 Identities=35% Similarity=1.229 Sum_probs=26.3
Q ss_pred eEEEeccCCCC------CCceeecCCCceEE-cccccc
Q 000212 1710 LYCICRKPYDE------KAMIACYQCDEWYH-IDCVKL 1740 (1850)
Q Consensus 1710 ~yC~C~~~~~~------~~mi~Cd~C~~WfH-~~Cvgi 1740 (1850)
.||+|.+||++ +.|+||-.|++||| -.|+--
T Consensus 129 ~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~ 166 (345)
T KOG2752|consen 129 LFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQA 166 (345)
T ss_pred eeEEecCCCCCccccccceeeeEEeccchhcccccCcc
Confidence 79999999987 57999999999999 555443
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.16 E-value=27 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=18.9
Q ss_pred hhhCCCceeecccCCccEEEEcCCcc
Q 000212 494 LVENGVPVYSVLQEPGNFVITFPRSY 519 (1850)
Q Consensus 494 L~~~GIpv~~~~Q~pGefVvtfP~ay 519 (1850)
+...||-=++..|.+.-|.=.||..-
T Consensus 1135 ~C~~Gv~G~rCdqCaRgy~G~fP~C~ 1160 (1758)
T KOG0994|consen 1135 VCRPGVGGPRCDQCARGYSGQFPVCV 1160 (1758)
T ss_pred eecCCCCCcchhhhhhhhcCCCCCCc
Confidence 44567777788888877777777654
No 46
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=92.80 E-value=0.048 Score=71.01 Aligned_cols=52 Identities=35% Similarity=0.809 Sum_probs=45.4
Q ss_pred CCCceEEEeccCCC-CCCceeecCCCceEEcccccccCC--CCceecCCCcCCCC
Q 000212 1706 ARSMLYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSA--PEIYICAACKPQAE 1757 (1850)
Q Consensus 1706 ~~~~~yC~C~~~~~-~~~mi~Cd~C~~WfH~~Cvgi~~~--~~~~~C~~C~~~~~ 1757 (1850)
.+...-|+|+..++ +++||+|+.|..|-|.-|+|+... |+.|.|..|....-
T Consensus 83 ~~~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~ 137 (508)
T KOG1844|consen 83 AREISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNK 137 (508)
T ss_pred cCcccccccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeeccccc
Confidence 34567999998888 899999999999999999999763 58999999998654
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.41 E-value=0.07 Score=68.50 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=39.5
Q ss_pred ceEE-EeccCCCCCCceeecCCCce-EEcccccccC---CCCceecCCCcCCCC
Q 000212 1709 MLYC-ICRKPYDEKAMIACYQCDEW-YHIDCVKLLS---APEIYICAACKPQAE 1757 (1850)
Q Consensus 1709 ~~yC-~C~~~~~~~~mi~Cd~C~~W-fH~~Cvgi~~---~~~~~~C~~C~~~~~ 1757 (1850)
.+-| ||..++....||-||.|+.= ||..|....- +...|||++|.....
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~ 268 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEI 268 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhhh
Confidence 3445 89888777889999999955 9999999864 346999999997643
No 48
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.26 E-value=0.15 Score=65.65 Aligned_cols=48 Identities=31% Similarity=0.820 Sum_probs=40.8
Q ss_pred CceEE-EeccCCCC--CCceeecCCCceEEcccccccCCCC-ceecCCCcCC
Q 000212 1708 SMLYC-ICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQ 1755 (1850)
Q Consensus 1708 ~~~yC-~C~~~~~~--~~mi~Cd~C~~WfH~~Cvgi~~~~~-~~~C~~C~~~ 1755 (1850)
+.+.| +|+.|+.. ..||.||.|+-=.|..|-||.+.|+ .|.|.-|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhcccc
Confidence 55677 99988664 5699999999999999999999875 8999888754
No 49
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=88.35 E-value=0.19 Score=64.81 Aligned_cols=49 Identities=37% Similarity=0.878 Sum_probs=42.9
Q ss_pred hhhhhcccCCCC--CcceeccccCCCccccccCCCCCCCCCCCCCcccccccC
Q 000212 246 DQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296 (1850)
Q Consensus 246 ~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~ 296 (1850)
+-+|-+|..++. ++.|++||.|+---|+-|-. +..+|.|-|.|..|..+
T Consensus 271 dviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 568999998864 46899999999999999977 88999999999988654
No 50
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=88.05 E-value=0.4 Score=65.86 Aligned_cols=53 Identities=21% Similarity=0.553 Sum_probs=43.6
Q ss_pred cCCCceEEEeccCCCC--CCceeecCCCceEEcccccccCCCC-ceecCCCcCCCC
Q 000212 1705 RARSMLYCICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQAE 1757 (1850)
Q Consensus 1705 ~~~~~~yC~C~~~~~~--~~mi~Cd~C~~WfH~~Cvgi~~~~~-~~~C~~C~~~~~ 1757 (1850)
-+...++|||...... .+-|.||.|+-=+|.+|+|+...|+ .|.|-.|-....
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence 3556789999766554 7899999999999999999887765 999999986543
No 51
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=87.35 E-value=0.37 Score=63.43 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=84.3
Q ss_pred eeEEecCCcchHHHHHHHHhhCCCcccCCh---hhhhhhccccCch---hh-hhCCCceeecccCCccEEEEcCCcccee
Q 000212 450 KCWYSVPGSEAGAFEKVMRSSLPDLFDAQP---DLLFQLVTMLNPS---VL-VENGVPVYSVLQEPGNFVITFPRSYHAG 522 (1850)
Q Consensus 450 K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p---~~l~~~~~~~~P~---~L-~~~GIpv~~~~Q~pGefVvtfP~ayH~g 522 (1850)
-.|=..+..++.|+++++++.-++.-...+ +-+|-+.+.++-. .| .+-||.-..|+|..||.||+-.||.|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 579999999999999999998665322211 2245555666553 23 3579999999999999999999999999
Q ss_pred ecccccceeecccCCCCchhhhhhhHHHHHhhCCCC--CCCHH
Q 000212 523 FNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAA--VLSHE 563 (1850)
Q Consensus 523 ~n~G~n~~eavNfa~~~Wl~~g~~~~~~y~~~~~~~--~fs~~ 563 (1850)
.|.--.+..|+-|..|.-+.....-.+.| +..| .+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~Ef---R~Lp~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEF---RQLPQNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHH---hhCCCcccchH
Confidence 99999999999999998876554444444 4444 55554
No 52
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=85.50 E-value=2.2 Score=53.49 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=77.4
Q ss_pred hHHHHHHHHhhccccchhHHHHHHHHHhcCcccccChhHHHHHHHHHhhHHHHHHhhhhcccc---cCCCCchH-HHHHH
Q 000212 1355 LWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTS---VGDKNSLL-GLLQK 1430 (1850)
Q Consensus 1355 ~Wq~r~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~c~e~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~sl~-~~l~~ 1430 (1850)
.-++-+|.++..++-.--+..||++.+...+++- | .+....+|- ++.+..+.... ...+.+++ ..|..
T Consensus 22 ~lk~~lr~i~~~~~~r~e~~~lQ~~l~~RsDLt~---~---~L~~~hr~Q--LEilVAiktG~~~fl~~~~~~~~~~Lve 93 (446)
T PF07227_consen 22 ELKEYLREILEGPEKREEFVALQKLLQRRSDLTS---E---TLSKAHRVQ--LEILVAIKTGIQAFLHPSISISQSELVE 93 (446)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhccccCCH---H---HHhHhHHHH--HHHHHHHhhCcHHHhCCCCCcChHHHHH
Confidence 4567788888887733488888999888888843 3 122222221 23333331111 11223333 12222
Q ss_pred H-H----hhhccceeeecCCCCC----CCCccccccc------CC--CCccceeeccccccccccccC--------CCcc
Q 000212 1431 I-K----QSVHRSLYIYNKPHGS----VSMTLCMCCE------SD--SKELEFLICSACKDCYHLQCL--------RPTE 1485 (1850)
Q Consensus 1431 ~-~----~~~~~~~~~~~~~~~~----~~~~~C~~c~------~~--~~~~~~i~C~~C~~~yH~~Cv--------~~~~ 1485 (1850)
| + +++-=...|=.+|++| ...+||.-|. .| .++--||.|++|++|=|..|- |++.
T Consensus 94 iFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~ 173 (446)
T PF07227_consen 94 IFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSV 173 (446)
T ss_pred HHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccC
Confidence 2 1 2232222344677776 4668887332 22 344556999999999999993 2222
Q ss_pred ccc--cccccccCCccccc
Q 000212 1486 VDR--NHAEAYICPYCQYF 1502 (1850)
Q Consensus 1486 ~~~--~~~~~~~Cp~C~~~ 1502 (1850)
+.. ...-.|.|-.|...
T Consensus 174 ~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 174 KGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CCCCccCceEEEccCCCCh
Confidence 222 12458999999654
No 53
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.75 E-value=0.63 Score=59.87 Aligned_cols=82 Identities=20% Similarity=0.428 Sum_probs=51.9
Q ss_pred CchHHHHHHHHhh--hccceeeecCCCCCCC-CcccccccCCCCccceeeccccccccccccCCCcc-ccccccccccCC
Q 000212 1422 NSLLGLLQKIKQS--VHRSLYIYNKPHGSVS-MTLCMCCESDSKELEFLICSACKDCYHLQCLRPTE-VDRNHAEAYICP 1497 (1850)
Q Consensus 1422 ~sl~~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~-~~~~~~~~~~Cp 1497 (1850)
-||..+|+.+... +.-+...|+..-...+ ..||.-|.....-...|.|+.|-.-||+.|++|.. ...--...|+||
T Consensus 221 ~s~~~hl~t~s~~~t~~e~r~~~D~~~~~~~~~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ 300 (613)
T KOG4299|consen 221 RSLPRHLETESKEGTVEEKRRERDKNISVEDIEDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCP 300 (613)
T ss_pred hhhhhhhhhhhhhccchhhhhhhccccccCCHHHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccC
Confidence 5666676665554 4334445544443333 26999884333322339999999999999999641 222223389999
Q ss_pred cccccc
Q 000212 1498 YCQYFE 1503 (1850)
Q Consensus 1498 ~C~~~~ 1503 (1850)
.|.++-
T Consensus 301 ec~~k~ 306 (613)
T KOG4299|consen 301 ECKIKS 306 (613)
T ss_pred CCeeee
Confidence 997764
No 54
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=81.28 E-value=0.43 Score=39.59 Aligned_cols=34 Identities=38% Similarity=1.009 Sum_probs=18.9
Q ss_pred cceeccccCCCccccccCCCCCCCCCCC-CCcccccc
Q 000212 259 EVMLLCDRCNKGWHVYCLSPPLKHVPRG-NWYCLECL 294 (1850)
Q Consensus 259 ~~lLlCD~Cd~~yH~~CL~PPL~~vP~g-dW~C~~C~ 294 (1850)
+.|+.|++|+-..|..|-. ...+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 3589999999999999976 4566666 79998873
No 55
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=80.23 E-value=2.9 Score=51.39 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=66.4
Q ss_pred Ccccceeeecccc-cccceEecCCCcceeeeeecCCCeeEEecCCcchHHHHHHHHhhCCCcccCChhhhhhhccccCch
Q 000212 414 GVMVPWLYLGMLF-SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPS 492 (1850)
Q Consensus 414 Gv~~P~lyvGm~f-S~~~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p~~l~~~~~~~~P~ 492 (1850)
....-.+|++-.+ ..|.+|.+++...- .-.-+.|.|..-++... +....... +-
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~dvfv---lQ~~G~K~W~l~~~~~~-----------~~~~~~~~-----------~~ 166 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHDVFV---LQLEGRKRWRLYPPPDE-----------PAPLYSDQ-----------PF 166 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSEEEE---EEEES-EEEEEE-SCCC-----------TTTSSCE-------------T
T ss_pred cccceEEEecCCCCCCccCEECCcccEE---EECCceeEEEECCCCcc-----------cccccCCC-----------Cc
Confidence 3456678999888 58999999975544 33445999998871110 00000000 11
Q ss_pred hhhhCCCceeecccCCccEEEEcCCccceeecccccceeecccCCCCchhhh
Q 000212 493 VLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544 (1850)
Q Consensus 493 ~L~~~GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g 544 (1850)
...+..-|+..++=+|||.++.-+|.+|.+.+.|.+++-+++|-+++|..+-
T Consensus 167 ~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 167 KQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp TTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred cccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 1122336778889999999999999999999999999999999999997754
No 56
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=78.07 E-value=0.91 Score=60.22 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=39.1
Q ss_pred CCCCCCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000212 1446 HGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1446 ~~~~~~~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
++..++..|-+| . +..+.+.|+.|..+||..|.++......... |+|+=|+.
T Consensus 42 ~~~~~~e~c~ic-~--~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~-~~c~Rc~~ 93 (696)
T KOG0383|consen 42 WDDAEQEACRIC-A--DGGELLWCDTCPASFHASCLGPPLTPQPNGE-FICPRCFC 93 (696)
T ss_pred cchhhhhhhhhh-c--CCCcEEEeccccHHHHHHccCCCCCcCCccc-eeeeeecc
Confidence 445667888888 2 3334577999999999999996655555555 99999944
No 57
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=75.97 E-value=1.8 Score=55.86 Aligned_cols=47 Identities=23% Similarity=0.709 Sum_probs=38.5
Q ss_pred ceEEEec--cCCCCCCceeec--CCCceEEcccccccCCCC-ceecCCCcCC
Q 000212 1709 MLYCICR--KPYDEKAMIACY--QCDEWYHIDCVKLLSAPE-IYICAACKPQ 1755 (1850)
Q Consensus 1709 ~~yC~C~--~~~~~~~mi~Cd--~C~~WfH~~Cvgi~~~~~-~~~C~~C~~~ 1755 (1850)
--+|+|- +.....+.|-|| .|..=.|..|-||.+.|. .|||..|...
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQ 57 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhh
Confidence 3589994 333346799999 899999999999999875 9999999764
No 58
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=75.83 E-value=1.4 Score=59.52 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=43.0
Q ss_pred hhhhhhcccCCCCCcceeccccCCCccccccCCCCCCCCCCCCCccccccc
Q 000212 245 LDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 245 ~~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
.++.|.+|+... .+++|..|++-||.-|..||+..+|..+|-|--|..
T Consensus 343 ~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 343 YDDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred ecccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 467899998764 489999999999999999999999999999998864
No 59
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=75.81 E-value=1.4 Score=52.42 Aligned_cols=33 Identities=30% Similarity=0.706 Sum_probs=26.0
Q ss_pred CCcccccccCCCC-----ccceeeccccccccc-cccCC
Q 000212 1450 SMTLCMCCESDSK-----ELEFLICSACKDCYH-LQCLR 1482 (1850)
Q Consensus 1450 ~~~~C~~c~~~~~-----~~~~i~C~~C~~~yH-~~Cv~ 1482 (1850)
++.+|.|=..|-+ +.+|++|.+|.|||| -.|+-
T Consensus 127 qG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 127 QGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred cceeEEecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 5688998766655 578999999999999 55544
No 60
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=75.78 E-value=0.46 Score=40.80 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=29.6
Q ss_pred ccccccCCCCccce-eeccccccccccccCCCccccccccccccCCcc
Q 000212 1453 LCMCCESDSKELEF-LICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1499 (1850)
Q Consensus 1453 ~C~~c~~~~~~~~~-i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C 1499 (1850)
.|.+|..++.+.+. +... |++.||.+|+..-.+. ...||.|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-----~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-----NNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-----SSB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-----CCcCCcc
Confidence 48889888865444 5555 9999999999955433 2499998
No 61
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=75.36 E-value=1.3 Score=57.10 Aligned_cols=46 Identities=30% Similarity=0.870 Sum_probs=38.2
Q ss_pred hhhcccC--CCCCcceeccc--cCCCccccccCCCCCCCCCCCCCccccccc
Q 000212 248 ICEQCKS--GLHGEVMLLCD--RCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 248 ~C~~C~~--~~~~~~lLlCD--~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
-|-+|.. |=.+.-++.|| .|.-+-|.-|-. +-+||.|.|||-+|..
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCES 56 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhh
Confidence 4888874 33456789999 788999999977 7899999999999975
No 62
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=73.87 E-value=0.98 Score=64.59 Aligned_cols=53 Identities=28% Similarity=0.753 Sum_probs=45.3
Q ss_pred CCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccccc
Q 000212 1450 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1503 (1850)
Q Consensus 1450 ~~~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~ 1503 (1850)
...+|-.|....++..|+-|+.|-.|||+-|++|..+..+.. .|.||.|...+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~-dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPG-DWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcC-CccCCccchhh
Confidence 457799999999999999999999999999999887666654 49999995544
No 63
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=73.85 E-value=2.7 Score=45.60 Aligned_cols=32 Identities=34% Similarity=0.818 Sum_probs=25.2
Q ss_pred cccccCCCccccccccccccCCccccccccccc
Q 000212 1476 YHLQCLRPTEVDRNHAEAYICPYCQYFESESVS 1508 (1850)
Q Consensus 1476 yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~~~~~~ 1508 (1850)
||+.|+.|.+..... -.|.||.|....++...
T Consensus 2 ~H~~CL~Ppl~~~P~-g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 2 FHLCCLRPPLKEVPE-GDWICPFCEVEKSGQSA 33 (148)
T ss_pred cccccCCCCCCCCCC-CCcCCCCCcCCCCCCcc
Confidence 999999988776666 57999999877666433
No 64
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=71.92 E-value=8.7 Score=48.19 Aligned_cols=54 Identities=28% Similarity=0.621 Sum_probs=41.8
Q ss_pred ccccccCCCCccceeeccccccccccccCCCcccc---ccccccccCCccccccccc
Q 000212 1453 LCMCCESDSKELEFLICSACKDCYHLQCLRPTEVD---RNHAEAYICPYCQYFESES 1506 (1850)
Q Consensus 1453 ~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~---~~~~~~~~Cp~C~~~~~~~ 1506 (1850)
-|++|..-.+.+..+.||+|..-||.-|+.|.+.. .....-|.|+-|-.-++.|
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~esSD 602 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKNESSD 602 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccccCcc
Confidence 49999887888888999999999999999965443 2335679999994444333
No 65
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=67.70 E-value=5.2 Score=46.91 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=109.9
Q ss_pred hhhHHHHHhcccccccccchhh----hHHHHHHHhhhhHHHHHHHHhhccccchhHHHHHHHHHhcCccccc---ChhHH
Q 000212 1322 LSDVEEVLAGCKGINFSFPVVI----GELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFD---CPELE 1394 (1850)
Q Consensus 1322 L~~i~~LL~~~q~i~v~~p~~~----~~le~~i~r~~~Wq~r~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~---c~e~~ 1394 (1850)
|+-|+..|+.++.|+-..+++. ..+..+.++ =+||..++...... -...|+...++ +.+.+
T Consensus 14 LDciLsaLVh~~~Lk~~~~~~~~~e~s~~~~L~~~----Y~qa~~ll~~~q~~--------~~~~~~~~~~~~~~l~~ae 81 (275)
T PF15499_consen 14 LDCILSALVHLESLKNAVTELCSKEESVFWRLFTK----YNQANKLLHTCQLD--------GVKDDDCKKVPSEILAKAE 81 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHH----HHHHHHHHHhhhhc--------CCCCcccccCchHHHHHHH
Confidence 5689999999999888877642 334444433 34555555443311 00011111111 11223
Q ss_pred HHHHHHHhhHHHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCCccceeecccccc
Q 000212 1395 KVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKD 1474 (1850)
Q Consensus 1395 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~i~C~~C~~ 1474 (1850)
..+++|+. .=.+.+.-.+.-.-++.+|-.-||--+++.-.-.-.++ -+.-.=.-.|+.||.
T Consensus 82 ~~Ln~vR~--~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF-----------------~~sf~WeFeC~~Cg~ 142 (275)
T PF15499_consen 82 TCLNEVRM--EIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLF-----------------LYSFSWEFECSQCGH 142 (275)
T ss_pred HHHHHHHH--HHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHh-----------------heeeEEEEEccccCC
Confidence 33333331 11122222222223567787777766655433322222 111111378999999
Q ss_pred ccccccCCCcccccccccccc---------CCcccccc--------c----------ccccccCCCCccc--CCCCCchH
Q 000212 1475 CYHLQCLRPTEVDRNHAEAYI---------CPYCQYFE--------S----------ESVSQFGGSPLRF--GGKRSDLR 1525 (1850)
Q Consensus 1475 ~yH~~Cv~~~~~~~~~~~~~~---------Cp~C~~~~--------~----------~~~~~~~~~~~~~--~~~rp~l~ 1525 (1850)
.|.-.|++.++.=+.....|. |+.|.... . +-+-+|..+.|.| .|.++.++
T Consensus 143 ~~~~R~~K~L~TFtnv~pdwhPLnA~h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFVeGLP~ndl~~ysF~feg~~Y~Vt 222 (275)
T PF15499_consen 143 KYQNRCTKTLVTFTNVIPDWHPLNAVHFGPCNSCNSKSQRRKMVLEKVPPVFMLHFVEGLPHNDLQHYSFHFEGCLYQVT 222 (275)
T ss_pred hhhhhheeeecccCCCCCCCCcccccccCCCcccCChHHhHhhhhhcCchhhhhhhhccCCccCCCccceeecCeeEEEE
Confidence 999999999999899988885 88886531 1 2244566666655 78888888
Q ss_pred HHHHhhhccchhccCcc
Q 000212 1526 MLIELLSDSEFFCRGIE 1542 (1850)
Q Consensus 1526 ~~~~l~s~~~~~~~~i~ 1542 (1850)
.+|---...+||-.||-
T Consensus 223 ~VIQY~~~~~HFvtWi~ 239 (275)
T PF15499_consen 223 SVIQYQANLNHFVTWIR 239 (275)
T ss_pred EEEEEeccCceeEEEEE
Confidence 88888888888888774
No 66
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=62.82 E-value=6.5 Score=47.70 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=29.3
Q ss_pred CCCcccccccCCC--Cc--------cceeeccccccccccccCCCccccccccccccCCcccc
Q 000212 1449 VSMTLCMCCESDS--KE--------LEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1449 ~~~~~C~~c~~~~--~~--------~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
++.++|++|-... .+ ....-=--||+++|..|++.-. .+.=.||-|..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~-----ERqQTCPICr~ 342 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL-----ERQQTCPICRR 342 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH-----HhccCCCcccC
Confidence 5668899884331 00 0001223699999999998432 34447999944
No 67
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=59.65 E-value=6.9 Score=49.29 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=34.0
Q ss_pred eEEEeccCCCC---CCceeecCCCceEEcccc--------cccCC-----CC-ceecCCCcCCCC
Q 000212 1710 LYCICRKPYDE---KAMIACYQCDEWYHIDCV--------KLLSA-----PE-IYICAACKPQAE 1757 (1850)
Q Consensus 1710 ~yC~C~~~~~~---~~mi~Cd~C~~WfH~~Cv--------gi~~~-----~~-~~~C~~C~~~~~ 1757 (1850)
..|+|.+-++. --+|.||.|+-|-|.+|. |.+.. .| .|+|..|-...+
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 45689763332 349999999999999994 32221 13 899999988744
No 68
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=59.06 E-value=3.4 Score=53.58 Aligned_cols=62 Identities=27% Similarity=0.616 Sum_probs=43.4
Q ss_pred ccccccCCC--CccceeeccccccccccccCCCccccccccccccCCcccccccccccccCCCCccc
Q 000212 1453 LCMCCESDS--KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRF 1517 (1850)
Q Consensus 1453 ~C~~c~~~~--~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~~~~~~ 1517 (1850)
.|..|..-. ....|+.|+.|+..||..||.....++.-..-|-||.|...++= ..++.+++|
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c---~~~gD~~kf 83 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEAC---GTTGDPKKF 83 (694)
T ss_pred hhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeec---cccCCcccc
Confidence 344554333 33457999999999999999966666655566999999887643 245555555
No 69
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=58.20 E-value=4.6 Score=47.13 Aligned_cols=53 Identities=25% Similarity=0.736 Sum_probs=43.7
Q ss_pred CCCCCCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcc
Q 000212 1446 HGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1499 (1850)
Q Consensus 1446 ~~~~~~~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C 1499 (1850)
++|-+=+.|.+|.---+|.+.+-|+.|..-|||-|+-|..+.+. .-.|-|--|
T Consensus 276 wqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~epp-egswsc~KO 328 (336)
T KOG1244|consen 276 WQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPP-EGSWSCHLC 328 (336)
T ss_pred eeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCC-CCchhHHHH
Confidence 56788889999988889999999999999999999996544333 346888877
No 70
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.39 E-value=4.1 Score=38.96 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred ccccccCCCC-cc--ceeecc--ccccccccccCCCcccc---ccccc---cccCCcccc
Q 000212 1453 LCMCCESDSK-EL--EFLICS--ACKDCYHLQCLRPTEVD---RNHAE---AYICPYCQY 1501 (1850)
Q Consensus 1453 ~C~~c~~~~~-~~--~~i~C~--~C~~~yH~~Cv~~~~~~---~~~~~---~~~Cp~C~~ 1501 (1850)
.|.+|+.+.. +. .-+.|. .|+.-||..|+---... .+... ...||+|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 4889987754 32 348998 99999999999832222 22222 346999953
No 71
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.63 E-value=11 Score=46.41 Aligned_cols=46 Identities=24% Similarity=0.606 Sum_probs=38.9
Q ss_pred cccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000212 1452 TLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1452 ~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
..|++|..++..++-++==-|.+-||..||.+=+...+ =+||=|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r----~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR----TFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC----ccCCCCCC
Confidence 58999999999999988899999999999996544432 26999976
No 72
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=52.40 E-value=2.9 Score=55.51 Aligned_cols=91 Identities=21% Similarity=0.444 Sum_probs=66.3
Q ss_pred HHHHhhH----HHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCC--ccce--eec
Q 000212 1398 SKVDKVE----NWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSK--ELEF--LIC 1469 (1850)
Q Consensus 1398 ~~~~~~~----~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~--~~~~--i~C 1469 (1850)
+.|+.|. +|+.-.+.++-.....+.|.+.+|+--+++++--. +--..|++|.+-.. ++.+ -+|
T Consensus 1421 eGi~rVg~sE~~wkswI~~~q~~~~~~ngs~~D~l~l~kkNi~~~f---------sG~eECaICYsvL~~vdr~lPskrC 1491 (1525)
T COG5219 1421 EGIKRVGTSEIGWKSWINLRQNEMIKKNGSFMDLLGLWKKNIDEKF---------SGHEECAICYSVLDMVDRSLPSKRC 1491 (1525)
T ss_pred ccceeccccHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc---------CCcchhhHHHHHHHHHhccCCcccc
Confidence 3444444 89999999988888888999999998888776443 12245999965333 3333 799
Q ss_pred cccccccccccCCCccccccccccccCCccc
Q 000212 1470 SACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1500 (1850)
Q Consensus 1470 ~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1500 (1850)
.+|+.-||++|+= +=.+..-.=.||-|-
T Consensus 1492 ~TCknKFH~~CLy---KWf~Ss~~s~CPlCR 1519 (1525)
T COG5219 1492 ATCKNKFHTRCLY---KWFASSARSNCPLCR 1519 (1525)
T ss_pred chhhhhhhHHHHH---HHHHhcCCCCCCccc
Confidence 9999999999986 334444556799993
No 73
>PHA03247 large tegument protein UL36; Provisional
Probab=49.78 E-value=1.4e+03 Score=35.98 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=55.3
Q ss_pred HhhhhhhhhhhhhhhcccCCCCCCCCcccHHHHHhhhcCCCCCCCCCchHHHHHHHHH----HHHHHHHHHHHHhccCCH
Q 000212 778 RRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEE----ARSLIQEINAALSACSKI 853 (1850)
Q Consensus 778 e~W~e~a~~c~s~~q~~~~~k~~~~~kl~leeL~~ll~~~~Lpc~~pe~~~Lke~l~~----ve~~~~ea~~aL~~~~~~ 853 (1850)
+.|...+..|+.+++.. --.+.. |+.-|++++.. ...|..+|+.+|.. +-
T Consensus 1318 erW~~dv~AaL~r~Etr--------seFDa~----------------EL~RLrd~Aa~~gYd~~~f~krAeqalaA--~a 1371 (3151)
T PHA03247 1318 ERWAADVEAALDRVENR--------AEFDAV----------------ELRRLQALAATHGYNPRDFRKRAEQALAA--NA 1371 (3151)
T ss_pred HHHHHHHHHHHHHHhhh--------hhccHH----------------HHHHHHHHHHhcCCChHHHHHHHHHHHHH--hH
Confidence 45777777777776641 122334 44445554442 56888999998875 33
Q ss_pred HHHHHHHHhhcCCCcccccchHHH-----HHHHhhhHHHHHHHHH
Q 000212 854 SELELLYSRASGLPICIVESEKLS-----QRISSAKVWRDSVRKC 893 (1850)
Q Consensus 854 ~eLe~LLe~g~~l~V~lpEl~~L~-----~rleqak~Wl~kvr~~ 893 (1850)
.....-|+....||=|-||=.... ..|... +|-+..--+
T Consensus 1372 ~~~~~ALe~v~~FNPYtpeN~~~~~~PPla~L~~i-tW~daF~~A 1415 (3151)
T PHA03247 1372 KTATLALEAAFAFNPYTPENQRHPMLPPLAAIHRI-DWGPAFGAA 1415 (3151)
T ss_pred HHHHHHHHHHHhcCCCCccccCCCCCCcHHHHhcC-chHhhhhhh
Confidence 456667788888999988754422 234445 588877543
No 74
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=49.40 E-value=8.2 Score=42.63 Aligned_cols=48 Identities=23% Similarity=0.738 Sum_probs=34.4
Q ss_pred hhhccc---CCCCCcceeccccCCCccccccCCCCC------CCCCCCCC--ccccccc
Q 000212 248 ICEQCK---SGLHGEVMLLCDRCNKGWHVYCLSPPL------KHVPRGNW--YCLECLN 295 (1850)
Q Consensus 248 ~C~~C~---~~~~~~~lLlCD~Cd~~yH~~CL~PPL------~~vP~gdW--~C~~C~~ 295 (1850)
+|.+|+ .+..-..|+.|.+|-.+||-.||.|-- +.|-.++. -|-.|+.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 478884 333446799999999999999998763 44555554 3777764
No 75
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=48.63 E-value=3e+02 Score=31.43 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhc
Q 000212 969 PELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEG 1015 (1850)
Q Consensus 969 pel~~Lk~~l~ka~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g 1015 (1850)
.+++.+.+-.+.|.++++.+.++|+....+.+..-.+.+|..|...-
T Consensus 119 deV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~ 165 (209)
T KOG2910|consen 119 DEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESEL 165 (209)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh
Confidence 34555555567788999999999974433233333445555554443
No 76
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=48.02 E-value=21 Score=46.84 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.9
Q ss_pred CCcccccccCCCCccce---eeccccccccccccCC
Q 000212 1450 SMTLCMCCESDSKELEF---LICSACKDCYHLQCLR 1482 (1850)
Q Consensus 1450 ~~~~C~~c~~~~~~~~~---i~C~~C~~~yH~~Cv~ 1482 (1850)
|+-+|+-|.-..++..+ =.|+-+|.-||..|..
T Consensus 339 Q~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~ 374 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQ 374 (580)
T ss_pred cCceecccCCCcccccccchhHhhhhhhhhCchhcc
Confidence 55689999887775333 6799999999999988
No 77
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=47.70 E-value=6.8e+02 Score=33.85 Aligned_cols=164 Identities=13% Similarity=0.221 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH------HHHHHHhhcCCCHHHHHHHHHHhCCCccccchHHHHHHHHH
Q 000212 906 VLYKLESEALDLKIDVPETDMLLKMIGQAESCR------ARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHS 979 (1850)
Q Consensus 906 ~Lr~Ll~Ea~~l~v~~Pe~~~Lqell~~aE~we------~kA~~lL~~~~sl~eLe~ll~e~~~iPv~lpel~~Lk~~l~ 979 (1850)
+.|-|++.|.++ +|..-.|=-.++.-|+.+ -+|++.|-..+.+=-.-+.+++.++ +.+.|..++.
T Consensus 394 darilL~rAvec---cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng------n~~mv~kii~ 464 (913)
T KOG0495|consen 394 DARILLERAVEC---CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG------NVDMVEKIID 464 (913)
T ss_pred HHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC------CHHHHHHHHH
Confidence 478888888877 566533333344444443 3455555444555556667777777 3344444444
Q ss_pred HH-------------HHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCChhhHHHHHHHhhhHHHHHHhhc
Q 000212 980 DA-------------IFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACD 1046 (1850)
Q Consensus 980 ka-------------~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~l~el~~LE~~L~~a~W~eka~k~f~ 1046 (1850)
++ ..|++++++.- ...++-.++.+|...-.+.|+-+. +...|++.+. .|.
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e--------~agsv~TcQAIi~avigigvEeed--------~~~tw~~da~-~~~ 527 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACE--------DAGSVITCQAIIRAVIGIGVEEED--------RKSTWLDDAQ-SCE 527 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHh--------hcCChhhHHHHHHHHHhhccccch--------hHhHHhhhHH-HHH
Confidence 33 34888887653 235667778888777766654333 3344877665 455
Q ss_pred CCCCHHHHHHHHHHhhccchhHHHHHhhhhHHHHHHHHHHHHHHhHhccccchhhHHHHHHHh
Q 000212 1047 TKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRAS 1109 (1850)
Q Consensus 1047 kk~sL~~L~~lL~~g~~l~~~vE~~~~el~~ll~~a~~WeekA~~~L~~r~~l~~le~ii~ea 1109 (1850)
+.+..+.-+.+...+..+.+.- ..+...+..+|. ..+..+.+++++++|
T Consensus 528 k~~~~~carAVya~alqvfp~k-------~slWlra~~~ek-------~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFPCK-------KSLWLRAAMFEK-------SHGTRESLEALLQKA 576 (913)
T ss_pred hcchHHHHHHHHHHHHhhccch-------hHHHHHHHHHHH-------hcCcHHHHHHHHHHH
Confidence 6666666555555444322111 111222222222 446777788877764
No 78
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.93 E-value=1.1e+03 Score=32.71 Aligned_cols=119 Identities=21% Similarity=0.166 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHhh------cCCCccccc-chHHHHHHHhhhHHHHHH
Q 000212 826 HLILQNYAEEARSLIQEINAALSAC--------SKISELELLYSRA------SGLPICIVE-SEKLSQRISSAKVWRDSV 890 (1850)
Q Consensus 826 ~~~Lke~l~~ve~~~~ea~~aL~~~--------~~~~eLe~LLe~g------~~l~V~lpE-l~~L~~rleqak~Wl~kv 890 (1850)
+..+..-++++..|..++..+|..+ +.+..++.|++.. .+...|+-. +..|...+.+... +|
T Consensus 31 ~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~---~v 107 (683)
T PF08580_consen 31 VKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMEL---DV 107 (683)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHH---HH
Confidence 3445556677888999999988775 2256777777774 233333332 4444443333211 11
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHhhcCCCCcch--HHHHHHHHHHHHHHHHHHHHhh--------cCCCHHHHHHHHHH
Q 000212 891 RKCISNKCPAAIEIDVLYKLESEALDLKIDVPET--DMLLKMIGQAESCRARCSEALR--------GSMSLKTVELLLQE 960 (1850)
Q Consensus 891 r~~L~~~~~~~~tLd~Lr~Ll~Ea~~l~v~~Pe~--~~Lqell~~aE~we~kA~~lL~--------~~~sl~eLe~ll~e 960 (1850)
+ ..|..+++.++-| +.+-|+ +.|..+..++|.|...+.++=+ ..++.-+|+.++++
T Consensus 108 K----------~~L~~vK~qveiA----mE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~ 173 (683)
T PF08580_consen 108 K----------KTLISVKKQVEIA----MEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEE 173 (683)
T ss_pred H----------HHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHh
Confidence 1 2233333333222 222233 3444555555555554444332 12678899999999
Q ss_pred h
Q 000212 961 L 961 (1850)
Q Consensus 961 ~ 961 (1850)
+
T Consensus 174 ~ 174 (683)
T PF08580_consen 174 M 174 (683)
T ss_pred c
Confidence 8
No 79
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=43.08 E-value=18 Score=40.99 Aligned_cols=33 Identities=27% Similarity=0.662 Sum_probs=27.3
Q ss_pred ceeecCCCceEEcccccccCCC-CceecCCCcCCCC
Q 000212 1723 MIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAE 1757 (1850)
Q Consensus 1723 mi~Cd~C~~WfH~~Cvgi~~~~-~~~~C~~C~~~~~ 1757 (1850)
-+-|.+|. -|..|+...+.+ +.|+||.|...++
T Consensus 192 alIC~~C~--hhngl~~~~ek~~~efiC~~Cn~~n~ 225 (251)
T COG5415 192 ALICPQCH--HHNGLYRLAEKPIIEFICPHCNHKND 225 (251)
T ss_pred hhcccccc--ccccccccccccchheecccchhhcC
Confidence 46688886 388999998865 5799999999887
No 80
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.52 E-value=1.1e+02 Score=37.83 Aligned_cols=38 Identities=26% Similarity=0.787 Sum_probs=29.8
Q ss_pred CCcccccccCCC----------CccceeeccccccccccccCCCccccccccccccCCccc
Q 000212 1450 SMTLCMCCESDS----------KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1500 (1850)
Q Consensus 1450 ~~~~C~~c~~~~----------~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1500 (1850)
..++|-+|.+.- .+..+++|+.|+.-+|..=++ ||+|.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~-------------C~~Cg 233 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVK-------------CSNCE 233 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCcc-------------CCCCC
Confidence 568999997762 345679999999999987443 99994
No 81
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=40.38 E-value=9.7 Score=36.67 Aligned_cols=41 Identities=22% Similarity=0.686 Sum_probs=26.2
Q ss_pred cccccCCCCcc----------ceeeccccccccccccCCCccccccccccccCCcc
Q 000212 1454 CMCCESDSKEL----------EFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1499 (1850)
Q Consensus 1454 C~~c~~~~~~~----------~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C 1499 (1850)
|++|..+..+. -.+.=..|++.||..|+.--+.... .||.|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~C 72 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-----TCPLC 72 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-----B-TTS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-----cCCCC
Confidence 99988877322 2233345999999999983332222 89988
No 82
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.76 E-value=15 Score=33.41 Aligned_cols=32 Identities=22% Similarity=0.696 Sum_probs=27.1
Q ss_pred hhhhhcccCCC-CCcceeccccCCCccccccCC
Q 000212 246 DQICEQCKSGL-HGEVMLLCDRCNKGWHVYCLS 277 (1850)
Q Consensus 246 ~~~C~~C~~~~-~~~~lLlCD~Cd~~yH~~CL~ 277 (1850)
...|.+|+..- +++.++.|..|...||-.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45799999876 378899999999999999943
No 83
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=39.06 E-value=20 Score=45.98 Aligned_cols=48 Identities=19% Similarity=0.645 Sum_probs=36.9
Q ss_pred CceEEEeccCCCCCC-ceeecCCCceEEcccccccCCC---------CceecCCCcCC
Q 000212 1708 SMLYCICRKPYDEKA-MIACYQCDEWYHIDCVKLLSAP---------EIYICAACKPQ 1755 (1850)
Q Consensus 1708 ~~~yC~C~~~~~~~~-mi~Cd~C~~WfH~~Cvgi~~~~---------~~~~C~~C~~~ 1755 (1850)
...+|+|....+.+. -++|..|..|||..|.-..... ..|+|..|+..
T Consensus 19 ~~~~~y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 19 QATVCYCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred CccccccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCc
Confidence 457999987777544 8999999999998665544321 38999999987
No 84
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.11 E-value=3.5e+02 Score=32.48 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHhhcCCCccc
Q 000212 828 ILQNYAEEARSLIQEINAALSACSK-ISELELLYSRASGLPICI 870 (1850)
Q Consensus 828 ~Lke~l~~ve~~~~ea~~aL~~~~~-~~eLe~LLe~g~~l~V~l 870 (1850)
.+..+...++.++.+++.++.+... -...+..+.++..+...+
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777665433 234555555555444333
No 85
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=37.77 E-value=13 Score=46.60 Aligned_cols=43 Identities=26% Similarity=0.640 Sum_probs=34.6
Q ss_pred EeccCCCC--CCceeecCCCceEEcccccccCCCC-ceecCCCcCC
Q 000212 1713 ICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQ 1755 (1850)
Q Consensus 1713 ~C~~~~~~--~~mi~Cd~C~~WfH~~Cvgi~~~~~-~~~C~~C~~~ 1755 (1850)
+|...+++ ...|.||+|+-=.|.+|-||.--|+ .|.|..|.-.
T Consensus 198 ~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~ 243 (669)
T COG5141 198 KCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhccc
Confidence 67655553 5799999999999999999997765 8888888643
No 86
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=36.93 E-value=24 Score=40.12 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=22.7
Q ss_pred ceeeccccccccccccCCCccccccccccccCCcccccc
Q 000212 1465 EFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1503 (1850)
Q Consensus 1465 ~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~ 1503 (1850)
..+.|..|-+ |..|+.+. .++.. .|+||+|+..-
T Consensus 191 ~alIC~~C~h--hngl~~~~-ek~~~--efiC~~Cn~~n 224 (251)
T COG5415 191 KALICPQCHH--HNGLYRLA-EKPII--EFICPHCNHKN 224 (251)
T ss_pred hhhccccccc--cccccccc-cccch--heecccchhhc
Confidence 3466666643 77888843 33333 89999998864
No 87
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=36.93 E-value=9.2 Score=31.75 Aligned_cols=41 Identities=20% Similarity=0.516 Sum_probs=27.3
Q ss_pred cccccCCCCccceeeccccccccccccCCCccccccccccccCCccc
Q 000212 1454 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1500 (1850)
Q Consensus 1454 C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1500 (1850)
|..|.... ...+.-..|++.||..|+...... ....||.|.
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~----~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS----GKNTCPLCR 42 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh----CcCCCCCCC
Confidence 66676555 223444559999999999844322 456799994
No 88
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=36.65 E-value=53 Score=28.72 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=27.4
Q ss_pred HHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHHHHHhh
Q 000212 134 KLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQLYYKHL 183 (1850)
Q Consensus 134 ~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~Y~kyL 183 (1850)
.|..+|..+|.- .|..|+..++..++ ...++.+|.+||
T Consensus 11 ~l~~~v~~~g~~-------~W~~Ia~~~~~~Rt-----~~qc~~~~~~~~ 48 (48)
T PF00249_consen 11 KLLEAVKKYGKD-------NWKKIAKRMPGGRT-----AKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHSTTT-------HHHHHHHHHSSSST-----HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCc-------HHHHHHHHcCCCCC-----HHHHHHHHHhhC
Confidence 456677777653 69999999983332 347899999875
No 89
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.03 E-value=4e+02 Score=36.57 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=24.8
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000212 964 FTVNMPELELLKQYHSDAIFWIARLNDILVNI 995 (1850)
Q Consensus 964 iPv~lpel~~Lk~~l~ka~eW~~~a~~ll~~~ 995 (1850)
||-..-...++..++.+..+|..++.+++..+
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L 55 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGL 55 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777778888899999999988644
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.64 E-value=6.4e+02 Score=31.01 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCcccccchHHHHHHHhhhHHHHHHHHHhhccCCC-cccHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 000212 855 ELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPA-AIEIDVLYKLESEALDLKIDVPETDMLLKMIGQ 933 (1850)
Q Consensus 855 eLe~LLe~g~~l~V~lpEl~~L~~rleqak~Wl~kvr~~L~~~~~~-~~tLd~Lr~Ll~Ea~~l~v~~Pe~~~Lqell~~ 933 (1850)
++..+.+....++..-+.+..|+..+++.. |.......-....+. .-.+..|+..+..+... ......++++...
T Consensus 91 ~~~~l~e~~~~~~~~~~~~~~ler~i~~Le-~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~---~e~~~~~~el~ae 166 (294)
T COG1340 91 EYRELKEKRNEFNLGGRSIKSLEREIERLE-KKQQTSVLTPEEERELVQKIKELRKELEDAKKA---LEENEKLKELKAE 166 (294)
T ss_pred HHHHHHHHhhhhhccCCCHHHHHHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 455556666666566677888888888873 554433210000000 11234444445444332 2334567777777
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCccccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 000212 934 AESCRARCSEALRGSMSLKTVELLLQELGDFTVNMP-ELELLKQYHSDAIFWIARLNDIL 992 (1850)
Q Consensus 934 aE~we~kA~~lL~~~~sl~eLe~ll~e~~~iPv~lp-el~~Lk~~l~ka~eW~~~a~~ll 992 (1850)
+..-..+|..+- ..+..+.++++.+.=.|- .....+++-.+|...+..+-.+.
T Consensus 167 i~~lk~~~~e~~------eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~ 220 (294)
T COG1340 167 IDELKKKAREIH------EKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELS 220 (294)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777664 456666777665554442 22334444455555555554443
No 91
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=35.62 E-value=17 Score=47.51 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=41.5
Q ss_pred CCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000212 1450 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1450 ~~~~C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
+...|+|-..+..+..||.|+.|+-|=|..|++...... .+.|.|.-|..
T Consensus 85 ~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~--p~~y~c~~c~~ 134 (508)
T KOG1844|consen 85 EISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK--PDKYVCEICTP 134 (508)
T ss_pred cccccccccccCCCceeeCCcccCcccCceeeeecCCCC--chhceeeeecc
Confidence 346699887777788999999999999999999654444 79999999955
No 92
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=33.50 E-value=41 Score=43.00 Aligned_cols=54 Identities=9% Similarity=-0.173 Sum_probs=46.0
Q ss_pred hccCCCceEEEeccCCCC-CCceeecCCCceEEcccccccCCCCceecCCCcCCC
Q 000212 1703 SLRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQA 1756 (1850)
Q Consensus 1703 ~~~~~~~~yC~C~~~~~~-~~mi~Cd~C~~WfH~~Cvgi~~~~~~~~C~~C~~~~ 1756 (1850)
....+...||.|++.+.+ ..|.+|..|+.|+|..|++.+..++.++|..|....
T Consensus 165 ~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~~s~~~ 219 (464)
T KOG1886|consen 165 LRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQKSEIS 219 (464)
T ss_pred ccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceeccccccc
Confidence 345666789999999988 459999999999999999999999999999995543
No 93
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.39 E-value=23 Score=32.29 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=27.0
Q ss_pred CcccccccCCCC-ccceeeccccccccccccCC
Q 000212 1451 MTLCMCCESDSK-ELEFLICSACKDCYHLQCLR 1482 (1850)
Q Consensus 1451 ~~~C~~c~~~~~-~~~~i~C~~C~~~yH~~Cv~ 1482 (1850)
...|..|..... ...-+.|..|+.=||-.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 467999988886 44569999999999999985
No 94
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=33.35 E-value=27 Score=31.25 Aligned_cols=30 Identities=17% Similarity=0.555 Sum_probs=16.5
Q ss_pred CceeecCCCceEEcccccccC----CCCceecCCC
Q 000212 1722 AMIACYQCDEWYHIDCVKLLS----APEIYICAAC 1752 (1850)
Q Consensus 1722 ~mi~Cd~C~~WfH~~Cvgi~~----~~~~~~C~~C 1752 (1850)
..|+||.|.+|=... .++.. .++.|+|..=
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 479999999998775 44433 3569999763
No 95
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.01 E-value=62 Score=43.92 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=70.9
Q ss_pred hHHHhhhcccCCcccCCCCChhhHHHHHhcccccccccchhhhHHHHHHHhhhhHHHHHHHHhhccccchhHHHHHHHHH
Q 000212 1302 KWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKE 1381 (1850)
Q Consensus 1302 ~wl~~~~~~lp~~~rs~rp~L~~i~~LL~~~q~i~v~~p~~~~~le~~i~r~~~Wq~r~~~~~~~~~~~~~~~~l~~l~~ 1381 (1850)
+|..-.-+.|-++.+++|=|+-.|+.+|+---.+.. ..+ ++.| ..|-++-++....-.
T Consensus 754 ~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ltl--s~I----kD~i---i~~l~~~~~~I~qd~------------- 811 (933)
T KOG2114|consen 754 DCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLTL--SVI----KDYI---IKWLNKYSTIIEQDE------------- 811 (933)
T ss_pred hHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceEE--ehh----HHHH---HHHHHhhhHHHHhhH-------------
Confidence 344444456678888888888888888875433332 223 3333 234333333332222
Q ss_pred hcCcccccChhHHHHHHHHHhhHHHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCC
Q 000212 1382 LGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDS 1461 (1850)
Q Consensus 1382 ~g~~~~~~c~e~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~ 1461 (1850)
.+| +..-.+++++ .+.+++|+.+=-|.- ..-|-.|..+
T Consensus 812 ----~~I-----e~yk~~i~e~-------------------------r~~l~~lr~sa~i~q-------~skCs~C~~~- 849 (933)
T KOG2114|consen 812 ----DAI-----EVYKKDIEEK-------------------------RQELETLRTSAQIFQ-------VSKCSACEGT- 849 (933)
T ss_pred ----HHH-----HHHHHHHHHH-------------------------HHHHHHhhcccceee-------eeeecccCCc-
Confidence 111 3333333322 244455555555552 2458888332
Q ss_pred CccceeeccccccccccccCCCccccccccccccCCcccc
Q 000212 1462 KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1462 ~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
=+.+|++ -.|++-||-.|++ ...-.||-|..
T Consensus 850 LdlP~Vh-F~CgHsyHqhC~e--------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 850 LDLPFVH-FLCGHSYHQHCLE--------DKEDKCPKCLP 880 (933)
T ss_pred cccceee-eecccHHHHHhhc--------cCcccCCccch
Confidence 2334444 5799999999999 45678999944
No 96
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=32.67 E-value=20 Score=30.43 Aligned_cols=26 Identities=38% Similarity=0.954 Sum_probs=22.7
Q ss_pred cccccccchhhccccc-cCCCceeehhch
Q 000212 629 CIICRQYLYLSAVACR-CRPAAFVCLEHW 656 (1850)
Q Consensus 629 C~~C~~~~fls~v~c~-~~~~~~~CL~h~ 656 (1850)
|..|+.-.||..+.|. | +.++|+.|-
T Consensus 1 C~~C~~~~~l~~f~C~~C--~~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHC--GNLFCGEHR 27 (39)
T ss_pred CcccCCcccccCeECCcc--CCccccccC
Confidence 7889999999888898 7 479999994
No 97
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=31.85 E-value=1.3e+02 Score=35.75 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred cchhhhHHHhhhcccCCcccCCCCChhhHHH----HHhcc--cccccccchhhhHHHHHHHhhhhHHHHHHHHhhccccc
Q 000212 1297 LIHGVKWLKRALEVISAPCKFKRCKLSDVEE----VLAGC--KGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQ 1370 (1850)
Q Consensus 1297 ~~~~~~wl~~~~~~lp~~~rs~rp~L~~i~~----LL~~~--q~i~v~~p~~~~~le~~i~r~~~Wq~r~~~~~~~~~~~ 1370 (1850)
...+..|-+.+..+|+.-. .++|+|..++. |++++ .++.++.|+. -.++. +.-..||.+.++....+++.
T Consensus 20 tass~p~~~~~gvll~R~P-vv~~~~se~EK~~~~ll~e~e~e~sl~~dhel-~~~qe--~~~~~~q~~~~~e~~~eDe~ 95 (263)
T KOG4548|consen 20 TASSQPWKIFAGVLLSRLP-VVAPPLSELEKRFYSLLMELEQEKSLKPDHEL-KAFQE--EKEKAWQAQLRKEVDEEDEF 95 (263)
T ss_pred ccCCCchhhhHHhhhhhcc-cccCCCCHHHHHHHHHHHHHHHHhccCCcHHH-HHHHH--HHHHHHHHHHHHhhcccchh
Confidence 3445678787777776544 34555655444 44443 2588888887 56666 34468999988766666632
Q ss_pred hhHHHHHHHHHhcCcccccChhHHHHHHHHHhhHHHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeee
Q 000212 1371 QSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIY 1442 (1850)
Q Consensus 1371 ~~~~~l~~l~~~g~~~~~~c~e~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~ 1442 (1850)
+-+.....| +.|.+...+...+...++..=--.+--..+.||+.+||.
T Consensus 96 -----------------------~~i~~~~~k-d~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLL 143 (263)
T KOG4548|consen 96 -----------------------IGITANDRK-DMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLL 143 (263)
T ss_pred -----------------------hHHHHHHHH-HHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEE
Confidence 222222221 689999988766654433111111222345689999955
No 98
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=30.75 E-value=35 Score=32.37 Aligned_cols=31 Identities=32% Similarity=0.740 Sum_probs=18.9
Q ss_pred CceeecCCC-ceEEcccccccCC--------CCceecCCC
Q 000212 1722 AMIACYQCD-EWYHIDCVKLLSA--------PEIYICAAC 1752 (1850)
Q Consensus 1722 ~mi~Cd~C~-~WfH~~Cvgi~~~--------~~~~~C~~C 1752 (1850)
.||.|..=+ -|.|-.|+.+++. ..+|+|..=
T Consensus 29 AMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH 68 (78)
T PF13341_consen 29 AMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDH 68 (78)
T ss_dssp -EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTT
T ss_pred eEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhh
Confidence 499998544 9999999999973 469999753
No 99
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=30.69 E-value=31 Score=39.80 Aligned_cols=41 Identities=27% Similarity=0.656 Sum_probs=31.8
Q ss_pred hhhhhcccCCC-----CCcceeccccCCCccccccCCCCCCCCCCCCCccccccc
Q 000212 246 DQICEQCKSGL-----HGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1850)
Q Consensus 246 ~~~C~~C~~~~-----~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1850)
+.+|++|++++ +.+....|+.|..-||..|... =.||+|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 56899998764 2346788999999999999872 12999964
No 100
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=28.33 E-value=2.5e+03 Score=32.46 Aligned_cols=318 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCCCCCCCcccHHHHHhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 000212 765 DAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEI 843 (1850)
Q Consensus 765 d~lr~l~~~l~eAe~W~e~a~~c~s~~q~~~~~k~~~~~kl~leeL~~ll~-~~~Lpc~~pe~~~Lke~l~~ve~~~~ea 843 (1850)
..+++++..-..+=.-+.+|.++...+.. .+.=+.+-..+++ .+.++-++..+..|+-.+...+.=..-+
T Consensus 933 ~~l~~l~~qk~~~L~~a~~V~~f~~eC~e---------t~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~ai 1003 (2473)
T KOG0517|consen 933 QQLRELVDQKKVALESALRVETFHLECEE---------TRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAI 1003 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHhccCCHHHHHHHHHhhcCCCcccc-cchHHHHHHHhhhHHHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCc
Q 000212 844 NAALSACSKISELELLYSRASGLPICIV-ESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVP 922 (1850)
Q Consensus 844 ~~aL~~~~~~~eLe~LLe~g~~l~V~lp-El~~L~~rleqak~Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~Ea~~l~v~~P 922 (1850)
+. .+-.|..++..+--.-| |...+..+++....--..+.+. +.+....+.++..+.
T Consensus 1004 e~---------kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~----------~~~~~~~l~ea~~lQ---- 1060 (2473)
T KOG0517|consen 1004 EA---------KVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQR----------LQEREERLEEAGGLQ---- 1060 (2473)
T ss_pred HH---------HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH----
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 000212 923 ETDMLLKMIGQAESCRARCSEALRG---SMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRK 999 (1850)
Q Consensus 923 e~~~Lqell~~aE~we~kA~~lL~~---~~sl~eLe~ll~e~~~iPv~lpel~~Lk~~l~ka~eW~~~a~~ll~~~~~~~ 999 (1850)
.+-.-+..-..|-++.+..+.. +.++++.+.|+.+-.+|- .....|..+.+.+.+-.....
T Consensus 1061 ---~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~-------------eEI~~~~e~y~~~~~~ge~~~ 1124 (2473)
T KOG0517|consen 1061 ---RFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALR-------------EEIDGYQEDYQRMRALGETVA 1124 (2473)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhhhh
Q ss_pred CCCCCHHHHHHHHHhcccCccCCCChhhH----HHHHHHhh----hHHHHHHhhcCCCCHHHHHHHHHHhhccchhHHHH
Q 000212 1000 DQHNVIDELNCILKEGASLRIQVDDLPLV----EVELKKAH----CREKALKACDTKMPLDFIRQVTAEAVILQIEREKL 1071 (1850)
Q Consensus 1000 d~~p~l~eL~~Ll~~g~~L~V~l~el~~L----E~~L~~a~----W~eka~k~f~kk~sL~~L~~lL~~g~~l~~~vE~~ 1071 (1850)
+. +...+...|-.+...|.-.-.+|.+| ..-|.++. ..+.++.+-..-.+-+...++-+-|.++. .+|.+
T Consensus 1125 ~g-~~~p~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle-~ae~~ 1202 (2473)
T KOG0517|consen 1125 DG-QTDPQYLFLRERLQALGTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLE-EAEAL 1202 (2473)
T ss_pred cc-CCCchHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccHH-HHHHH
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhccccchhhHHHHHHH----hhcccccCCChHHHHHHH-HHHHHHHHhhHH
Q 000212 1072 FIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRA----SQDIFVVLPSLDEVQNEI-STAKSWLKNSEL 1138 (1850)
Q Consensus 1072 ~~el~~ll~~a~~WeekA~~~L~~r~~l~~le~ii~e----aenip~~Lp~~~~Lk~~L-~~Ar~Wl~k~~~ 1138 (1850)
+....+.++.+..-++|...+.. .-+.+|+. |..|.--..++++-..++ .+|..|+.+...
T Consensus 1203 LKrh~DF~~tm~a~~~ki~a~~~------~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~ 1268 (2473)
T KOG0517|consen 1203 LKRHRDFLTTMDANDEKIEALVD------TGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKD 1268 (2473)
T ss_pred HHHHHHHHHHHhcchHHHHHHHH------HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 101
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=28.27 E-value=24 Score=35.17 Aligned_cols=44 Identities=18% Similarity=0.566 Sum_probs=26.7
Q ss_pred cccccCCCCccceeeccccccccccccCCCccccccccccccCCccc
Q 000212 1454 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1500 (1850)
Q Consensus 1454 C~~c~~~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1500 (1850)
|.-|..+.++-..+-+ .|++.||+.|+.-=.+. +... =.||.|-
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~-~~~~-~~CPmCR 78 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLST-QSSK-GQCPMCR 78 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcc-ccCC-CCCCCcC
Confidence 4445444444444444 49999999998833332 2233 3999993
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=27.88 E-value=59 Score=43.78 Aligned_cols=96 Identities=22% Similarity=0.352 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhHHHHHHhhhhcccccCCC--CchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCCccceeec
Q 000212 1392 ELEKVLSKVDKVENWKQRCKEIVGTSVGDK--NSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLIC 1469 (1850)
Q Consensus 1392 e~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~i~C 1469 (1850)
|++.+.-+.+.++.=.++++..+....+.+ .|--..|..+++..++.+ + |.+|...-++..++-
T Consensus 595 ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~L--k-----------Cs~Cn~R~Kd~vI~k- 660 (698)
T KOG0978|consen 595 ELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELL--K-----------CSVCNTRWKDAVITK- 660 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhce--e-----------CCCccCchhhHHHHh-
Confidence 556666666667766667777766655533 355667777777777655 2 888876666655543
Q ss_pred cccccccccccCCCccccccccccccCCcccc-cccccc
Q 000212 1470 SACKDCYHLQCLRPTEVDRNHAEAYICPYCQY-FESESV 1507 (1850)
Q Consensus 1470 ~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~-~~~~~~ 1507 (1850)
|++.|=..||+ ..=.++.=.||-|+- +++.|+
T Consensus 661 --C~H~FC~~Cvq----~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 661 --CGHVFCEECVQ----TRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred --cchHHHHHHHH----HHHHHhcCCCCCCCCCCCcccc
Confidence 33444444555 335678889999975 455544
No 103
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=26.30 E-value=53 Score=34.39 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCCccceeeccccc
Q 000212 1420 DKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACK 1473 (1850)
Q Consensus 1420 ~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~i~C~~C~ 1473 (1850)
.+-+++.+|++|+..+|.++.-. ..|- .+.|+.|.-.+++...++|.+=-
T Consensus 27 ~~~tVLd~L~~Ik~~~D~sLafr---~sCr-~giCGsCam~ING~~~LAC~t~v 76 (110)
T PF13085_consen 27 PGMTVLDALNYIKEEQDPSLAFR---YSCR-SGICGSCAMRINGRPRLACKTQV 76 (110)
T ss_dssp STSBHHHHHHHHHHHT-TT--B-----SSS-SSSSSTTEEEETTEEEEGGGSBG
T ss_pred CCCcHHHHHHHHHhccCCCeEEE---ecCC-CCCCCCCEEEECCceecceeeEc
Confidence 56899999999999999999855 2344 48999999999999999997533
No 104
>PHA02929 N1R/p28-like protein; Provisional
Probab=25.00 E-value=29 Score=40.99 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=30.6
Q ss_pred CCcccccccCCCCccc-----eeeccccccccccccCCCccccccccccccCCccc
Q 000212 1450 SMTLCMCCESDSKELE-----FLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1500 (1850)
Q Consensus 1450 ~~~~C~~c~~~~~~~~-----~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1500 (1850)
+...|+.|.....+.+ +..=..|++.||..|+..-... .=.||-|-
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-----~~tCPlCR 223 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-----KNTCPVCR 223 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-----CCCCCCCC
Confidence 4467999977654322 2233579999999999844322 22799994
No 105
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=24.86 E-value=45 Score=38.56 Aligned_cols=68 Identities=26% Similarity=0.523 Sum_probs=41.0
Q ss_pred CchHHHHHHHHhhhccceeeecCCCCCCCC-cccccccC-----CCCccceeeccccccccccccCCCcccccccccccc
Q 000212 1422 NSLLGLLQKIKQSVHRSLYIYNKPHGSVSM-TLCMCCES-----DSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYI 1495 (1850)
Q Consensus 1422 ~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~C~~c~~-----~~~~~~~i~C~~C~~~yH~~Cv~~~~~~~~~~~~~~ 1495 (1850)
++|...|+++.+....=+ ++ =.-|..+ -.|-.|.. +......++|..|+..||-.|..- + .
T Consensus 125 G~L~~~L~~l~~~~~~HV--~~-C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---~-------~ 191 (202)
T PF13901_consen 125 GQLLPQLEKLVQFAEKHV--YS-CELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---K-------S 191 (202)
T ss_pred chHHHHHHHHHHHHHHHH--HH-hHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---C-------C
Confidence 455555555544333322 21 0113333 56888854 234446689999999999999992 1 1
Q ss_pred CCccccc
Q 000212 1496 CPYCQYF 1502 (1850)
Q Consensus 1496 Cp~C~~~ 1502 (1850)
||-|.-.
T Consensus 192 CpkC~R~ 198 (202)
T PF13901_consen 192 CPKCARR 198 (202)
T ss_pred CCCcHhH
Confidence 9999543
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=24.74 E-value=24 Score=46.46 Aligned_cols=16 Identities=44% Similarity=1.030 Sum_probs=11.2
Q ss_pred eeccccccccccccCC
Q 000212 1467 LICSACKDCYHLQCLR 1482 (1850)
Q Consensus 1467 i~C~~C~~~yH~~Cv~ 1482 (1850)
.+|+.|+.+||-.|.+
T Consensus 532 ~rC~~C~avfH~~C~~ 547 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLR 547 (580)
T ss_pred eeHHHHHHHHHHHHHh
Confidence 5677777777777766
No 107
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=24.50 E-value=7.4 Score=37.22 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=19.0
Q ss_pred hhhcccCCCC-C--cceeccc--cCCCccccccCCCCCCCCCC-------CCCccccccc
Q 000212 248 ICEQCKSGLH-G--EVMLLCD--RCNKGWHVYCLSPPLKHVPR-------GNWYCLECLN 295 (1850)
Q Consensus 248 ~C~~C~~~~~-~--~~lLlCD--~Cd~~yH~~CL~PPL~~vP~-------gdW~C~~C~~ 295 (1850)
.|.+|-.... . ...+.|+ .|.+.||+.||.-=+.+.++ -.+.||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 4778876532 2 2357798 99999999998744333222 2345888753
No 108
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.45 E-value=31 Score=41.96 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=22.6
Q ss_pred hhhhhcccCC--------CC--CcceeccccCCCccccccCCCCCCCCCCCCCcccccccCCCCCCCc
Q 000212 246 DQICEQCKSG--------LH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDKDSFGF 303 (1850)
Q Consensus 246 ~~~C~~C~~~--------~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~~~~fGF 303 (1850)
...|.+||+. .. |.+.+.|..|+..||..=. .||.|-+.+...+.+
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~------------~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRI------------KCPYCGNTDHEKLEY 227 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TT------------S-TTT---SS-EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCC------------CCcCCCCCCCcceee
Confidence 3579999984 22 5699999999999998743 499998877654443
No 109
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.67 E-value=44 Score=27.28 Aligned_cols=23 Identities=26% Similarity=0.839 Sum_probs=18.0
Q ss_pred eccccccccccccCCCccccccccccccCCcccc
Q 000212 1468 ICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1501 (1850)
Q Consensus 1468 ~C~~C~~~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1501 (1850)
.|.+|+.-|.+.- ..|.||-|..
T Consensus 3 ~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 3 VCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred ECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 5888888886543 7899999944
No 110
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.91 E-value=27 Score=27.73 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=0.0
Q ss_pred eccCCCCCCceeecCCCceEEcccc
Q 000212 1714 CRKPYDEKAMIACYQCDEWYHIDCV 1738 (1850)
Q Consensus 1714 C~~~~~~~~mi~Cd~C~~WfH~~Cv 1738 (1850)
|+.+.+++.+-.|..|+-.+|..|+
T Consensus 6 C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 6 CGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp TS----S--EEE-TTT-----HHHH
T ss_pred CCCcCCCCceEECccCCCccChhcC
No 111
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.86 E-value=31 Score=35.56 Aligned_cols=31 Identities=29% Similarity=0.661 Sum_probs=24.6
Q ss_pred CceEEEeccCCCCCCceeecC--CCceEEcccccc
Q 000212 1708 SMLYCICRKPYDEKAMIACYQ--CDEWYHIDCVKL 1740 (1850)
Q Consensus 1708 ~~~yC~C~~~~~~~~mi~Cd~--C~~WfH~~Cvgi 1740 (1850)
....++|++. .|..|.|.. |..+||..|.-.
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 3456699866 567999997 999999999644
No 112
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.88 E-value=58 Score=36.35 Aligned_cols=41 Identities=29% Similarity=0.566 Sum_probs=32.1
Q ss_pred CCceeecccCCccEEEEcCCccceeecccccceeeccc-------CCCCchhh
Q 000212 498 GVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF-------APADWLPH 543 (1850)
Q Consensus 498 GIpv~~~~Q~pGefVvtfP~ayH~g~n~G~n~~eavNf-------a~~~Wl~~ 543 (1850)
.=++|.+.-.+|+++.+-||+||| |.+.++-|| +++-|.+.
T Consensus 114 d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 114 DGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 347888888899999999999999 566666665 56778654
Done!