BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000215
(1849 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 121/238 (50%), Gaps = 35/238 (14%)
Query: 311 VESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPR 370
V +RR+A+ KK + +E+++W+ GN + YG+D+ S++
Sbjct: 117 VGQYRRLAN--SKKYQTPPHQNFADLEQRYWK---SHPGNPPI-YGADISGSLF------ 164
Query: 371 VCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHN----ITGVMVPWLYLGMLF 426
E WNL +L G+IL ++ I GV P+LY GM
Sbjct: 165 ---------------EESTKQWNLGHL----GTILDLLEQECGVVIEGVNTPYLYFGMWK 205
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
+ F WH ED YS+NY H+G+PK WY VP E++ R PD+ L V
Sbjct: 206 TTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKV 265
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
+++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 266 ALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 323
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWK 69
+YPT +EF D Y+ + ++ A + G+ K++PPK WK
Sbjct: 39 TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 77
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV+ FR++A+ K R +E+K+W+ + A +YG+D++ SIY
Sbjct: 93 KAMTVKEFRQLANSGKYCTPRY--LDYEDLERKYWKNLTFVA----PIYGADINGSIYDE 146
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
G VD WN+ L + + +I GV P+LY GM
Sbjct: 147 G-----------VDE----------WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWK 185
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
+ F WH ED YS+NY H+G+PK WY++P E++ + P L +
Sbjct: 186 TTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKM 245
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++PSVL + G+P + QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 246 TLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYG 303
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKP 70
+ P+ +EF++ +Y+ + ++ A R G+ K++PPK WKP
Sbjct: 19 TFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKP 58
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 29/239 (12%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQ-MEKKFWEIVEGAAGNVEVMYGSDLDTSIYG 365
K TV +R +A+ K++++ + +E+K+W+ N + YG+D+ S++
Sbjct: 94 KAMTVGEYRHLAN---SKKYQTPPHQNFEDLERKYWK---NRIYNSPI-YGADISGSLF- 145
Query: 366 SGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGML 425
D N WNL +L ++ + + I GV P+LY GM
Sbjct: 146 --------------DENT------KQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMW 185
Query: 426 FSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQL 485
+ F WH ED YS+NY H G+PK WY VP E++ R P L
Sbjct: 186 KTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHK 245
Query: 486 VTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 246 VALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 304
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWK 69
+++PT++EF D +YI + ++ A R G+ KI+PPK WK
Sbjct: 20 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 58
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQ-MEKKFWE--IVEGAAGNVEVMYGSDLDTSI 363
K TV +R +A+ K++++ + +E+K+W+ I +YG+D+ S+
Sbjct: 87 KAMTVGEYRHLAN---SKKYQTPPHQNFEDLERKYWKNRIYNSP------IYGADISGSL 137
Query: 364 YGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLG 423
+ D N WNL +L ++ + + I GV P+LY G
Sbjct: 138 F---------------DENT------KQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFG 176
Query: 424 MLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLF 483
M + F WH ED YS+NY H G+PK WY VP E++ R P L
Sbjct: 177 MWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLR 236
Query: 484 QLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPH 543
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +
Sbjct: 237 HKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 296
Query: 544 G 544
G
Sbjct: 297 G 297
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWK 69
+++PT++EF D +YI + ++ A R G+ KI+PPK WK
Sbjct: 13 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 51
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 140 bits (353), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQ-MEKKFWE--IVEGAAGNVEVMYGSDLDTSI 363
K TV +R +A+ K++++ + +E+K+W+ I +YG+D+ S+
Sbjct: 83 KAMTVGEYRHLAN---SKKYQTPPHQNFEDLERKYWKNRIYNSP------IYGADISGSL 133
Query: 364 YGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLG 423
+ D N WNL +L ++ + + I GV P+LY G
Sbjct: 134 F---------------DENT------KQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFG 172
Query: 424 MLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLF 483
M + F WH ED YS+NY H G+PK WY VP E++ R P L
Sbjct: 173 MWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLR 232
Query: 484 QLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPH 543
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +
Sbjct: 233 HKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 292
Query: 544 G 544
G
Sbjct: 293 G 293
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWK 69
+++PT++EF D +YI + ++ A R G+ KI+PPK WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 119/238 (50%), Gaps = 33/238 (13%)
Query: 310 TVESFRRVADRAKKKRFRSGSASRVQ-MEKKFWE--IVEGAAGNVEVMYGSDLDTSIYGS 366
TV +R +A+ K++++ + +E+K+W+ I +YG+D+ S++
Sbjct: 86 TVGEYRHLAN---SKKYQTPPHQNFEDLERKYWKNRIYNSP------IYGADISGSLF-- 134
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
D N WNL +L ++ + + I GV P+LY GM
Sbjct: 135 -------------DENT------KQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWK 175
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
+ F WH ED YS+NY H G+PK WY VP E++ R P L V
Sbjct: 176 TTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKV 235
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
+++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 236 ALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 293
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWK 69
+++PT++EF D +YI + ++ A R G+ KI+PPK WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV FR++A+ K R ++E+K+W+ + +YG+D++ ++Y
Sbjct: 112 KAMTVREFRKIANSDKYCTPRYSEFE--ELERKYWKNLTFNP----PIYGADVNGTLY-- 163
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
+ VD WN+ L + + + I GV P+LY GM
Sbjct: 164 ---------EKHVDE----------WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 204
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
++F WH ED YS+NY H+G+PK WYSVP E++ + P + L +
Sbjct: 205 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 264
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 265 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 322
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKPPFALD 75
+YPT +EF++ YI I ++ A R G+ K+VPPK WKP + D
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD 82
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 138 bits (348), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV FR++A+ K R ++E+K+W+ + +YG+D++ ++Y
Sbjct: 89 KAMTVREFRKIANSDKYCTPRYSEFE--ELERKYWKNLTFNP----PIYGADVNGTLY-- 140
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
+ VD WN+ L + + + I GV P+LY GM
Sbjct: 141 ---------EKHVDE----------WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 181
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
++F WH ED YS+NY H+G+PK WYSVP E++ + P + L +
Sbjct: 182 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 241
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 242 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 299
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKPPFALD 75
+YPT +EF++ YI I ++ A R G+ K+VPPK WKP + D
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD 59
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV FR++A+ K R ++E+K+W+ + +YG+D++ ++Y
Sbjct: 92 KAMTVREFRKIANSDKYCTPRYSEFE--ELERKYWKNLTFNP----PIYGADVNGTLY-- 143
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
+ VD WN+ L + + + I GV P+LY GM
Sbjct: 144 ---------EKHVDE----------WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 184
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
++F WH ED YS+NY H+G+PK WYSVP E++ + P + L +
Sbjct: 185 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 244
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 245 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 302
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKPPFALD 75
+YPT +EF++ YI I ++ A R G+ K+VPPK WKP + D
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD 62
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV FR++A+ K R ++E+K+W+ + +YG+D++ ++Y
Sbjct: 89 KAMTVREFRKIANSDKYCTPRYSEFE--ELERKYWKNLTFNP----PIYGADVNGTLY-- 140
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
+ VD WN+ L + + + I GV P+LY GM
Sbjct: 141 ---------EKHVDE----------WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 181
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
++F WH ED YS+NY H+G+PK WYSVP E++ + P + L +
Sbjct: 182 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 241
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 242 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 299
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKPPFALD 75
+YPT +EF++ YI I ++ A R G+ K+VPPK WKP + D
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD 59
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 307 KRYTVESFRRVADRAKKKRFRSGSASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGS 366
K TV FR++A+ K R ++E+K+W+ + +YG+D++ ++Y
Sbjct: 84 KAMTVREFRKIANSDKYCTPRYSEFE--ELERKYWKNLTFNP----PIYGADVNGTLY-- 135
Query: 367 GFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLF 426
+ VD WN+ L + + + I GV P+LY GM
Sbjct: 136 ---------EKHVDE----------WNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWK 176
Query: 427 SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLV 486
++F WH ED YS+NY H+G+PK WYSVP E++ + P + L +
Sbjct: 177 TSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKM 236
Query: 487 TMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 237 TLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 294
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 32 VYYPTEDEFKDPLEYICKIRAE-AERYGICKIVPPKSWKPPFALD 75
+YPT +EF++ YI I ++ A R G+ K+VPPK WKP + D
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYD 54
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 29/209 (13%)
Query: 336 MEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLN 395
+E+ +W+ + MYG+D SI+ PE ++ WN+
Sbjct: 168 LEEYYWKTLNFTTP----MYGADTPGSIF-----------PEGLNV----------WNVA 202
Query: 396 NLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSV 455
LP +IL + + GV +LY G+ ++F WH ED YS+NY H+G PK WYS+
Sbjct: 203 KLP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSI 258
Query: 456 PGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITF 515
P + F K M+ P+ P+ L + + +P +L ENG+ ++ G F+IT+
Sbjct: 259 PQEDRFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITY 318
Query: 516 PRSYHAGFNFGLNCAEAVNFAPADWLPHG 544
P YHAGFN+G N AE+VNFA +WLP G
Sbjct: 319 PYGYHAGFNYGYNLAESVNFALEEWLPIG 347
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 31 PVYYPTEDEFKDPLEYICKIRAEAERYGICKIVPPKSWKPPFALDLGSFTFPTKTQAIHQ 90
PV+ PT ++F+D Y I + G+ K++PPK WK LDL P + + +
Sbjct: 15 PVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKD--KLDL-----PYSAETLQK 67
Query: 91 LQARS 95
++ +S
Sbjct: 68 IKIKS 72
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD----KDSFGF 303
IC+ C G + +L CD C+ +H++CL PPL +PRG W C +C+ ++ ++FGF
Sbjct: 18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGF 77
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 247 QICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
++C+ CK ML+CD C+KG+H +CL P +K VP W C C
Sbjct: 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 165 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
Query: 296 S 296
Sbjct: 225 D 225
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 181 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240
Query: 296 S 296
Sbjct: 241 D 241
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 1709 LYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP--------EIYICAACKPQAEESS 1759
LYCICR+P++ + MI C +C+EW+H DCV + A E YIC C + SS
Sbjct: 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 11 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 70
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 9 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 17 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLN 295
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 9 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 250 EQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296
++C G ++ CD C + +H+ CLSPPL+ +P G W C CL +
Sbjct: 9 DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 250 EQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296
++C G ++ CD C + +H+ CLSPPL+ +P G W C CL +
Sbjct: 6 DECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 52
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 242 EDELDQICEQCKSGLHG-----EVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLEC 293
+D+++++C C L G + L+CD C+ +H+YCL PPL VP + WYC EC
Sbjct: 14 KDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
C+ C+ + ++LCD CNK +H++CL P L VP G W C C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1703 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1752
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 1444 PHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499
P GS + C+C + ++ C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1703 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1752
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 1444 PHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499
P GS + C+C + ++ C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
C C + + + +L CD C++G+H+YCL+PP+ P G+W C C
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 247 QICEQCK-SGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
+ C C+ G + + ML CD C++G+H+ C PPL +P+G W C C
Sbjct: 60 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 242 EDELDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
E + CE C+ G GE+ +LCD C + +H+ CL P ++ P G W C C
Sbjct: 7 ETDHQDYCEVCQQG--GEI-ILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 1456 CESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499
CE + E ++C C YH+ CL P ++++ + CP+C+
Sbjct: 14 CEVCQQGGEIILCDTCPRAYHMVCLDP-DMEKAPEGKWSCPHCE 56
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 247 QICEQCKS-GLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
+ C C+ G + + ML CD C++G+H+ C PPL +P+G W C C
Sbjct: 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLECLNS 296
C C + L+CD C+ +H+YCL PPL VP + WYC EC N
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 56
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 243 DELDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
D + C CK G GE +L CD C +H++CL+PPL +P G W C C
Sbjct: 6 DHHMEFCRVCKDG--GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
>pdb|3O70|A Chain A, Phd-Type Zinc Finger Of Human Phd Finger Protein 13
Length = 68
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1701 KSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLL--SAPEIYICAACK 1752
++L + ++ C C KP+ + MI C +C W H+ C K+ + PE+++C C+
Sbjct: 12 ENLYFQGLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 65
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human Bptf
In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human Bptf
In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1703 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1752
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1444 PHGSVSMTLCMCCESDSKELEFLI-CSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1502
P GS + C+C ++ E +F I C C++ YH +C+ + + + Y+CP CQ E
Sbjct: 2 PLGSDTKLYCIC-KTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 1711 CICRKPYDEKAMIACYQCDEWYHIDCVKL--LSAPEIYICAACKPQ 1754
CIC +D+ MI C +C W HIDC+ + P+ Y+C C+P+
Sbjct: 31 CICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 261 MLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
+L+CD C++ +H+ CL PPLK +P+G W C C
Sbjct: 17 LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGN-WYCLEC 293
C C + LLCD CN +H+YCL+PPL VP WYC C
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 261 MLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
+L+CD C++ +H+ CL PPLK +P+G W C C
Sbjct: 21 LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 1703 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1752
L + + LYCIC+ P DE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 1444 PHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499
P GS + C+C + + ++ C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|3O7A|A Chain A, Crystal Structure Of Phf13 In Complex With H3k4me3
Length = 52
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 1708 MLYCICRKPYDEKAMIACYQCDEWYHIDCVKLL--SAPEIYICAACK 1752
++ C C KP+ + MI C +C W H+ C K+ + PE+++C C+
Sbjct: 4 LVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 50
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With A
H3k4me3 Peptide
Length = 75
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1713 CRKPYDEKAMIACYQCDEWYHIDCVKLLSAPE---IYICAAC 1751
C KP D MI C CD+WYH CV +++AP + C C
Sbjct: 24 CNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKC 65
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDK 298
IC C G M+ CD C+ +H C+ W+C +C N K
Sbjct: 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With H3k4me3
Peptide
Length = 75
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 1709 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKL--LSAP--EIYICAACKPQAEESS 1759
+YC+CR PYD + MI C C +W+H CV + AP +IY C C+ +S+
Sbjct: 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1444 PHGSVSMTLCMC-CESDSKELEFLI-CSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYF 1501
P GS++ C C F+I C ACKD +H C+ E + + Y CP C+
Sbjct: 2 PLGSMATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61
Query: 1502 ESES 1505
+S
Sbjct: 62 HGKS 65
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 246 DQICEQCKSG--LHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296
D +C C G + V+L CD CN H C P ++P G W C CL S
Sbjct: 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 66
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 243 DELDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
D + C CK G GE +L CD C +H++CL P L VP G W C C
Sbjct: 6 DHHMEFCRVCKDG--GE-LLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 1709 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKL----LSAPEIYICAACK 1752
+YC+CR PYD + MI C C +W+H CV + + ++Y C C+
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 1709 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1752
+YC+CR+PY+ MI C C +W+H CV + +IY C C+
Sbjct: 13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCE 61
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With Alpha-Ketoglutarate
Length = 488
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 1709 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSAP----EIYICAAC 1751
+YC+CR+PYD + MI C C +W+H CV + ++Y C C
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 246 DQICEQCKSG--LHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296
D +C C G + V+L CD CN H C P ++P G W C CL S
Sbjct: 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQS 75
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDK 298
C C++G GE +L C++C K +H+ C P L + P G W C C + K
Sbjct: 7 CAVCQNG--GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 402 GSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKC-WYSVPGSEA 460
G++L V H I G+ LY+ + S H E++ F S+N + G C W+ VP
Sbjct: 187 GNLLTHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINI-GPGDCEWFVVPEDYW 245
Query: 461 GAFEK---------VMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNF 511
G +M S P+L D L E VPVY +Q PG+
Sbjct: 246 GVLNDFCEKNNLNFLMSSWWPNLED-----------------LYEANVPVYRFIQRPGDL 288
Query: 512 V 512
V
Sbjct: 289 V 289
>pdb|3AVR|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
pdb|3AVS|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH
N-Oxyalylglycine, And Ni(Ii)
Length = 531
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 402 GSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKC-WYSVPGSEA 460
G++L V H I G+ LY+ + S H E++ F S+N + G C W+ VP
Sbjct: 246 GNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINI-GPGDCEWFVVPEGYW 304
Query: 461 GAFEK---------VMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNF 511
G +M S P+L D L E VPVY +Q PG+
Sbjct: 305 GVLNDFCEKNNLNFLMGSWWPNLED-----------------LYEANVPVYRFIQRPGDL 347
Query: 512 V 512
V
Sbjct: 348 V 348
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 242 EDELDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLEC 293
+D + C C++G G+ +L C++C K +H+ C P L P G+W C C
Sbjct: 3 DDPNEDWCAVCQNG--GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>pdb|1IG6|A Chain A, Human Mrf-2 Domain, Nmr, 11 Structures
pdb|2OEH|A Chain A, Determination Of The Three-Dimensional Structure Of The
Mrf2-Dna Complex Using Paramagnetic Spin Labeling
Length = 107
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 99 DSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVF 158
D + F + +++KE T + + + ++++L +F AA++ GGY+ + ++W ++
Sbjct: 3 DEQAFLVALYKYMKER-KTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIY 61
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1710 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1759
YC+C + Y E MI C D EW+H CV L + P + C C ++ SS
Sbjct: 38 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 90
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals
Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals
Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals
Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase Reveals
Structure Of Gem Diamine Intermediate
Length = 425
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1339 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 1389
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1339 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 1389
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1339 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 1389
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1710 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1759
YC+C + Y E MI C D EW+H CV L + P + C C ++ SS
Sbjct: 18 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 70
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMSFSRLICDNTHITKVPLHAF 567
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase
With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase
With Salicylhydroxamic Acid At 2.48 A Resolution
Length = 595
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMSFSRLICDNTHITKVPLHAF 567
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 445 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 495
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 496 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFSFSRLICDNTHITKVPLHAF 555
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 556 QANNYPHDFVDC 567
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 445 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 495
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 496 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 555
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 556 QANNYPHDFVDC 567
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFSFSRLICDNTHITKVPLHAF 567
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide Ions
At 2.9a Resolution
Length = 595
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 567
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple Halide
Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With Its
Catalyzed Product Hypothiocyanate Ion At 2.3a Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion Channel
Reveals A Preferential Queue Of The Inorganic Substrates
Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex With
Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1622 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1677
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1678 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1726
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 567
Query: 1727 QCDEWYH--IDC 1736
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 1710 YCICRK-PYDEKAMIAC--YQCD-EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1759
YC+C + Y E MI C QC EW+H CV L P+ + C C+ + SS
Sbjct: 18 YCLCNQVSYGE--MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDSGPSS 70
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 252 CKSGLHGEVMLLCD--RCNKGW-HVYCLSPPLKHVPRGNWYCLECLNSDKDSFG 302
C +GE M+ CD +C W H C+S L + P+G WYC +C S G
Sbjct: 21 CNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGPSSG 71
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 971 ELLKQYH--------SDAIFWIARL-NDILVNINGRKDQHNVIDELNCILKEGASLRIQV 1021
++ K+YH SDA +A++ +L N+ + Q N +D+L+ +L+E +R ++
Sbjct: 276 DVRKKYHAFEGMMKGSDARILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRVREEL 335
Query: 1022 DDLPLV 1027
LPLV
Sbjct: 336 GFLPLV 341
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 1710 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAAC 1751
YCIC + Y E M+ C D EW+H CV L AP+ + C C
Sbjct: 8 YCICNQVSYGE--MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 52
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 31.6 bits (70), Expect = 4.4, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 961 GDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQ 1020
GD PE+ KQ+ + D N ++D N +LN L+ GA++ I
Sbjct: 100 GDTNEQKPEIFTAKQHLEKS--------DAYKNAEHKEDFPNACKDLNNKLRVGAAVSID 151
Query: 1021 VDDLPLVEVELKKAH 1035
+D + VE EL KAH
Sbjct: 152 IDTIERVE-ELVKAH 165
>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The Dead
Ringer Protein
Length = 128
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 79 FTFPTKTQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNA 138
++F + + + QL + K F + F+++ GT +N+ LDL +L+N
Sbjct: 2 WSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKR-GTPINRLPIMAKSVLDLYELYNL 60
Query: 139 AKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQ 177
GG V+ +K W E+ + + I+ A + Q
Sbjct: 61 VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ 99
>pdb|1KQQ|A Chain A, Solution Structure Of The Dead Ringer Arid-Dna Complex
Length = 139
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 78 SFTFPTKTQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFN 137
++F + + + QL + K F + F+++ GT +N+ LDL +L+N
Sbjct: 3 GWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKR-GTPINRLPIMAKSVLDLYELYN 61
Query: 138 AAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQ 177
GG V+ +K W E+ + + I+ A + Q
Sbjct: 62 LVIARGGLVDVINKKLWQEIIKGLHLPSSITSAALTLRTQ 101
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHV---PRGNWYCLECL 294
IC++ S E M++CD+C +G+H C +P + W C +C+
Sbjct: 11 ICQEEYSEAPNE-MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 30.4 bits (67), Expect = 8.4, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 1711 CICRKPYDEKAMIACY--QCDEWYHIDCVKLLSA--------PEIYICAACKPQAEESS 1759
C+C + +MI C +C W H+ CV L PE + C C+ + SS
Sbjct: 19 CVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 252 CKSGLHGEVMLLCD--RCNKGW-HVYCLSPPLKHVPRGNWYCLEC 293
C +GE M+ CD C W H C+ L H P+G WYC +C
Sbjct: 16 CNQVSYGE-MIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,700,280
Number of Sequences: 62578
Number of extensions: 2133839
Number of successful extensions: 4876
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4700
Number of HSP's gapped (non-prelim): 188
length of query: 1849
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1736
effective length of database: 7,902,023
effective search space: 13717911928
effective search space used: 13717911928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)