Query 000215
Match_columns 1849
No_of_seqs 762 out of 1911
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 1.9E-68 4E-73 713.7 22.1 429 249-686 158-599 (904)
2 KOG0958 DNA damage-responsive 100.0 4.8E-56 1E-60 539.2 15.1 214 307-549 92-306 (690)
3 PF08429 PLU-1: PLU-1-like pro 100.0 9.8E-40 2.1E-44 395.5 34.2 318 727-1054 1-334 (335)
4 PF08429 PLU-1: PLU-1-like pro 100.0 2.2E-34 4.7E-39 348.9 33.3 308 884-1204 2-335 (335)
5 PF02373 JmjC: JmjC domain, hy 100.0 2.1E-29 4.6E-34 257.9 6.2 114 419-535 1-114 (114)
6 smart00501 BRIGHT BRIGHT, ARID 99.7 1.3E-17 2.7E-22 165.6 9.5 91 99-191 2-92 (93)
7 smart00545 JmjN Small domain f 99.7 4.2E-18 9.2E-23 141.8 3.4 42 29-70 1-42 (42)
8 PF01388 ARID: ARID/BRIGHT DNA 99.6 1.2E-15 2.6E-20 151.2 8.7 86 100-187 7-92 (92)
9 PF02375 JmjN: jmjN domain; I 99.5 9E-15 2E-19 116.2 1.5 34 31-64 1-34 (34)
10 PF02928 zf-C5HC2: C5HC2 zinc 99.4 4.3E-13 9.4E-18 119.5 4.4 54 628-681 1-54 (54)
11 COG5034 TNG2 Chromatin remodel 99.3 4E-12 8.7E-17 141.3 7.6 105 1648-1754 160-270 (271)
12 smart00558 JmjC A domain famil 99.2 1.3E-11 2.9E-16 111.5 4.5 56 391-449 2-57 (57)
13 KOG2744 DNA-binding proteins B 99.0 3.1E-10 6.8E-15 142.6 7.7 91 99-191 163-254 (512)
14 KOG1973 Chromatin remodeling p 99.0 1.1E-10 2.4E-15 137.7 3.0 54 1702-1756 213-270 (274)
15 KOG1244 Predicted transcriptio 98.7 3.5E-09 7.6E-14 118.3 2.0 48 248-295 283-330 (336)
16 KOG0825 PHD Zn-finger protein 98.7 4.6E-09 1E-13 130.0 1.6 51 247-297 216-267 (1134)
17 KOG1246 DNA-binding protein ju 98.6 5.6E-08 1.2E-12 132.6 6.7 281 389-684 604-900 (904)
18 PF00628 PHD: PHD-finger; Int 98.4 7.2E-08 1.6E-12 85.2 0.5 44 1710-1753 1-50 (51)
19 PF00628 PHD: PHD-finger; Int 98.1 6.5E-07 1.4E-11 79.1 1.1 48 248-295 1-50 (51)
20 smart00249 PHD PHD zinc finger 98.1 1.5E-06 3.1E-11 74.6 2.3 42 1710-1751 1-47 (47)
21 cd04718 BAH_plant_2 BAH, or Br 98.0 2.2E-06 4.9E-11 90.8 2.7 28 270-297 1-28 (148)
22 KOG4299 PHD Zn-finger protein 98.0 2.1E-06 4.5E-11 107.3 2.4 50 246-295 253-304 (613)
23 KOG2510 SWI-SNF chromatin-remo 97.9 1.5E-05 3.2E-10 96.9 5.9 93 85-189 282-374 (532)
24 KOG1632 Uncharacterized PHD Zn 97.8 1.4E-06 3.1E-11 105.8 -3.4 61 1452-1512 62-124 (345)
25 KOG1512 PHD Zn-finger protein 97.8 8.2E-06 1.8E-10 92.3 2.0 47 247-295 315-362 (381)
26 smart00249 PHD PHD zinc finger 97.7 2.5E-05 5.5E-10 66.9 3.0 46 248-293 1-47 (47)
27 KOG4443 Putative transcription 97.5 4.3E-05 9.3E-10 95.8 1.9 49 247-295 69-117 (694)
28 KOG1245 Chromatin remodeling c 97.4 3.3E-05 7.1E-10 107.5 -0.2 52 246-297 1108-1159(1404)
29 KOG1973 Chromatin remodeling p 97.3 9.3E-05 2E-09 88.0 2.2 51 1447-1502 216-269 (274)
30 KOG0957 PHD finger protein [Ge 97.0 0.00024 5.1E-09 85.9 1.0 48 246-293 544-595 (707)
31 KOG4323 Polycomb-like PHD Zn-f 96.1 0.0019 4E-08 80.3 1.1 49 1707-1755 170-225 (464)
32 KOG2131 Uncharacterized conser 96.1 0.0081 1.8E-07 71.5 6.0 105 419-539 201-305 (427)
33 KOG0383 Predicted helicase [Ge 96.0 0.0025 5.3E-08 83.3 1.3 46 246-294 47-92 (696)
34 KOG1632 Uncharacterized PHD Zn 96.0 0.002 4.3E-08 79.0 0.4 54 1703-1756 55-115 (345)
35 KOG0955 PHD finger protein BR1 96.0 0.0034 7.4E-08 84.9 2.5 54 243-298 216-271 (1051)
36 PF13621 Cupin_8: Cupin-like d 95.8 0.0058 1.3E-07 71.2 3.3 110 417-538 132-248 (251)
37 KOG2130 Phosphatidylserine-spe 95.2 0.014 3.1E-07 68.1 3.4 135 401-542 165-303 (407)
38 COG5141 PHD zinc finger-contai 94.9 0.014 3E-07 71.2 2.4 54 242-297 189-244 (669)
39 KOG1512 PHD Zn-finger protein 94.5 0.011 2.4E-07 67.8 0.3 45 1712-1756 319-365 (381)
40 KOG4323 Polycomb-like PHD Zn-f 94.2 0.017 3.7E-07 72.0 0.9 52 246-297 168-225 (464)
41 COG5034 TNG2 Chromatin remodel 93.9 0.029 6.3E-07 64.2 2.0 42 251-295 225-269 (271)
42 KOG2752 Uncharacterized conser 93.6 0.035 7.5E-07 65.2 2.0 32 1709-1740 129-167 (345)
43 PF13831 PHD_2: PHD-finger; PD 93.2 0.019 4.1E-07 47.4 -0.7 32 1721-1752 3-36 (36)
44 KOG1844 PHD Zn-finger proteins 93.2 0.039 8.5E-07 71.8 1.7 52 1705-1756 83-137 (508)
45 KOG0825 PHD Zn-finger protein 92.9 0.054 1.2E-06 69.5 2.3 49 1708-1756 215-268 (1134)
46 KOG0994 Extracellular matrix g 92.8 55 0.0012 45.4 33.4 45 948-992 1489-1535(1758)
47 KOG0994 Extracellular matrix g 92.2 28 0.0006 48.0 24.8 26 494-519 1135-1160(1758)
48 KOG0954 PHD finger protein [Ge 91.8 0.12 2.6E-06 66.4 3.4 50 1707-1756 270-323 (893)
49 KOG0954 PHD finger protein [Ge 89.7 0.13 2.8E-06 66.2 1.0 49 246-296 271-321 (893)
50 KOG1356 Putative transcription 88.9 0.31 6.8E-06 64.1 3.6 113 450-563 740-859 (889)
51 KOG0955 PHD finger protein BR1 87.3 0.46 1E-05 65.2 3.9 54 1703-1756 215-271 (1051)
52 PF07227 DUF1423: Protein of u 86.4 2.3 5.1E-05 53.2 8.8 141 1354-1502 22-193 (446)
53 KOG4299 PHD Zn-finger protein 84.3 0.47 1E-05 61.0 1.6 79 1421-1502 221-306 (613)
54 PF08007 Cupin_4: Cupin superf 84.3 1.3 2.7E-05 54.6 5.3 106 414-544 112-218 (319)
55 PF13831 PHD_2: PHD-finger; PD 83.2 0.32 6.9E-06 40.3 -0.3 34 259-294 2-36 (36)
56 PF13639 zf-RING_2: Ring finge 78.8 0.34 7.3E-06 41.6 -1.7 41 1452-1498 2-43 (44)
57 KOG0383 Predicted helicase [Ge 78.0 0.92 2E-05 60.2 1.1 52 1445-1500 42-93 (696)
58 cd04718 BAH_plant_2 BAH, or Br 78.0 1.5 3.3E-05 47.5 2.5 33 1475-1508 2-34 (148)
59 KOG1473 Nucleosome remodeling 77.6 1.2 2.5E-05 60.3 1.8 48 245-295 343-390 (1414)
60 KOG0956 PHD finger protein AF1 77.6 1 2.2E-05 57.9 1.2 46 248-295 7-56 (900)
61 KOG0957 PHD finger protein [Ge 77.3 5.2 0.00011 50.0 7.0 55 1452-1506 546-603 (707)
62 PF15499 Peptidase_C98: Ubiqui 75.0 2.6 5.7E-05 49.2 3.5 190 1321-1541 14-239 (275)
63 KOG0956 PHD finger protein AF1 74.9 2 4.3E-05 55.5 2.7 47 1708-1754 6-57 (900)
64 KOG2752 Uncharacterized conser 73.7 1.7 3.7E-05 51.7 1.6 33 1449-1481 127-165 (345)
65 KOG1245 Chromatin remodeling c 70.4 1.3 2.8E-05 63.4 -0.3 53 1449-1502 1107-1159(1404)
66 KOG1244 Predicted transcriptio 64.8 3 6.5E-05 48.6 1.1 53 1445-1498 276-328 (336)
67 PHA03247 large tegument protei 62.1 9.6E+02 0.021 37.7 27.7 89 777-892 1318-1415(3151)
68 PF07227 DUF1423: Protein of u 61.3 5.7 0.00012 50.0 2.7 48 1709-1756 130-194 (446)
69 PF11793 FANCL_C: FANCL C-term 59.1 3.5 7.6E-05 39.4 0.3 49 1452-1500 4-63 (70)
70 COG5219 Uncharacterized conser 57.0 2.2 4.9E-05 56.5 -1.7 90 1397-1498 1421-1518(1525)
71 KOG4443 Putative transcription 56.4 4.1 8.8E-05 53.0 0.4 62 1452-1516 20-83 (694)
72 COG5243 HRD1 HRD ubiquitin lig 54.9 9.3 0.0002 46.5 2.9 48 1448-1500 285-342 (491)
73 KOG4628 Predicted E3 ubiquitin 51.0 15 0.00032 45.4 3.9 47 1451-1501 230-276 (348)
74 COG5415 Predicted integral mem 50.0 12 0.00027 42.3 2.7 53 1722-1782 192-245 (251)
75 PF15446 zf-PHD-like: PHD/FYVE 47.5 9 0.0002 42.3 1.2 48 248-295 1-59 (175)
76 PF12678 zf-rbx1: RING-H2 zinc 45.2 8.1 0.00017 37.2 0.4 41 1453-1498 22-72 (73)
77 COG5415 Predicted integral mem 44.0 16 0.00034 41.5 2.4 37 1461-1502 188-224 (251)
78 KOG0495 HAT repeat protein [RN 43.2 6.9E+02 0.015 33.8 16.6 131 905-1061 394-543 (913)
79 PF08580 KAR9: Yeast cortical 41.4 1.1E+03 0.025 32.4 20.3 116 824-960 30-174 (683)
80 cd00162 RING RING-finger (Real 41.0 7.4 0.00016 32.3 -0.5 41 1453-1499 2-42 (45)
81 PF08580 KAR9: Yeast cortical 40.8 3E+02 0.0065 37.8 13.9 32 963-994 24-55 (683)
82 KOG2626 Histone H3 (Lys4) meth 40.3 19 0.00041 46.2 2.6 49 1706-1754 18-76 (544)
83 KOG1886 BAH domain proteins [T 39.4 28 0.00062 44.3 3.9 54 1702-1755 165-219 (464)
84 PF14446 Prok-RING_1: Prokaryo 38.8 16 0.00034 33.3 1.2 32 246-277 5-37 (54)
85 PRK03564 formate dehydrogenase 38.6 1.3E+02 0.0027 37.2 9.0 38 1449-1499 186-233 (309)
86 PF14446 Prok-RING_1: Prokaryo 38.1 17 0.00038 33.0 1.3 32 1450-1481 5-37 (54)
87 KOG4548 Mitochondrial ribosoma 36.7 94 0.002 36.8 7.1 118 1296-1441 20-143 (263)
88 PF00249 Myb_DNA-binding: Myb- 36.2 54 0.0012 28.7 4.1 38 134-183 11-48 (48)
89 smart00154 ZnF_AN1 AN1-like Zi 35.7 20 0.00043 30.5 1.2 26 628-655 1-27 (39)
90 PF13341 RAG2_PHD: RAG2 PHD do 35.7 26 0.00056 33.2 2.0 31 1721-1751 29-68 (78)
91 COG5141 PHD zinc finger-contai 35.1 15 0.00033 46.1 0.7 43 1712-1754 198-243 (669)
92 PHA03246 large tegument protei 34.4 2.2E+03 0.048 33.8 28.5 70 820-892 1412-1490(3095)
93 KOG2114 Vacuolar assembly/sort 33.4 61 0.0013 44.0 5.6 55 1429-1500 826-880 (933)
94 PF06008 Laminin_I: Laminin Do 33.0 3.5E+02 0.0076 32.5 11.7 42 827-868 53-95 (264)
95 PF07496 zf-CW: CW-type Zinc F 32.5 28 0.00062 31.1 1.8 30 1721-1751 2-35 (50)
96 KOG1844 PHD Zn-finger proteins 31.0 25 0.00054 46.1 1.7 50 1449-1500 85-134 (508)
97 PHA02929 N1R/p28-like protein; 29.9 21 0.00046 42.1 0.7 47 1448-1499 172-223 (238)
98 COG1340 Uncharacterized archae 29.8 8E+02 0.017 30.2 13.5 129 853-991 90-220 (294)
99 PF13901 DUF4206: Domain of un 29.0 35 0.00075 39.4 2.2 41 246-295 152-197 (202)
100 KOG2910 Uncharacterized conser 28.6 2.7E+02 0.0059 31.8 8.7 85 928-1013 70-164 (209)
101 PF15446 zf-PHD-like: PHD/FYVE 28.0 46 0.001 37.1 2.7 108 1720-1828 15-142 (175)
102 PF13901 DUF4206: Domain of un 27.0 37 0.0008 39.2 2.0 69 1421-1502 125-199 (202)
103 KOG1829 Uncharacterized conser 26.9 20 0.00042 47.2 -0.3 16 1466-1481 532-547 (580)
104 cd00350 rubredoxin_like Rubred 25.0 40 0.00086 27.5 1.2 23 1467-1500 3-25 (33)
105 PF12861 zf-Apc11: Anaphase-pr 24.9 29 0.00063 34.5 0.5 44 1453-1499 35-78 (85)
106 PF13085 Fer2_3: 2Fe-2S iron-s 24.9 58 0.0013 34.1 2.7 50 1419-1472 27-76 (110)
107 PF07649 C1_3: C1-like domain; 22.9 26 0.00057 27.8 -0.2 25 1713-1737 6-30 (30)
108 PF13923 zf-C3HC4_2: Zinc fing 22.7 23 0.00051 29.6 -0.5 39 1453-1498 1-39 (39)
109 PF13832 zf-HC5HC2H_2: PHD-zin 22.3 32 0.0007 35.5 0.3 24 1711-1736 59-84 (110)
110 PF11793 FANCL_C: FANCL C-term 21.8 9 0.00019 36.7 -3.6 48 248-295 4-63 (70)
111 smart00184 RING Ring finger. E 21.2 24 0.00052 28.0 -0.7 29 1466-1498 11-39 (39)
112 PF04216 FdhE: Protein involve 20.5 40 0.00087 41.0 0.7 46 246-303 172-227 (290)
113 COG1791 Uncharacterized conser 20.1 60 0.0013 36.3 1.8 40 499-543 115-161 (181)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=1.9e-68 Score=713.68 Aligned_cols=429 Identities=43% Similarity=0.858 Sum_probs=362.0
Q ss_pred hhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCcccccccC----CCCCCCccCC-cccchHHHHHHHHHHhh
Q 000215 249 CEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS----DKDSFGFVPG-KRYTVESFRRVADRAKK 323 (1849)
Q Consensus 249 C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~----~~~~fGF~~g-k~yTLeeF~~~Ad~~k~ 323 (1849)
|..|.++..+ .+++|++|++.||.+|+.||++.+|+|+|.|+.|+.+ ....|||.+| ..||+..|.+++++++.
T Consensus 158 ~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~ 236 (904)
T KOG1246|consen 158 CNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKK 236 (904)
T ss_pred hhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhc
Confidence 4556666555 4449999999999999999999999999999999876 3467899999 69999999999999999
Q ss_pred hccCCCC---cchhhhhhhhhhHhccCCCccccccccCCCCCCCCCCCCCcCCCCCCCcccccccccCCCCccccCCCCC
Q 000215 324 KRFRSGS---ASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWNEYCNSPWNLNNLPKL 400 (1849)
Q Consensus 324 ~~f~~~~---~~~~~~E~efW~~v~~~~~~v~V~yGaDi~~~~~gSgFp~~~~~~~~~~~~~~~~~y~~~~WNL~nlp~~ 400 (1849)
.||.... .+.+++|++||++|......++|.||+|+.+..+|||||......... ...++|+.++|||||+|.+
T Consensus 237 ~~~~~~~~~~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~---~~~~~y~~s~wnL~~i~~~ 313 (904)
T KOG1246|consen 237 DYFPKSKNSPDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLG---SEAEKYSNSGWNLNNIPRL 313 (904)
T ss_pred cccccccCCCCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCC---cchhhhccCcccccccccC
Confidence 9998653 336799999999999998899999999999999999999754322211 1236899999999999999
Q ss_pred cchhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCChh
Q 000215 401 KGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPD 480 (1849)
Q Consensus 401 ~~slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~pd 480 (1849)
++|+|+|.+.+|+||++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||++|++..|+++..+||
T Consensus 314 ~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~~~p~~~~~~pd 393 (904)
T KOG1246|consen 314 EGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNKLSPGLFIEQPD 393 (904)
T ss_pred CccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHhhCCcccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchhchhhhHHHHHHhcCCCCC
Q 000215 481 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVL 560 (1849)
Q Consensus 481 ~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~~~~~~y~~~~~~~vf 560 (1849)
++++++++++|..|.++|||||+++|+||+||||||++||+|||+|||++|+|||||.+||++|+.++++|+...+.++|
T Consensus 394 ~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lf 473 (904)
T KOG1246|consen 394 LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLF 473 (904)
T ss_pred cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhccCCCCcHHHH--HHHHHHHHHHHHHHHHHHHHcCcccc-ccCCCCCCCCCCCCcc--ccccccccccc
Q 000215 561 SHEELLCVVAKSDLDSKVSPYL--KRELLRVYTKERMWRERLWRKGIIKS-TPMGPRKCPEYVGTEE--DPTCIICRQYL 635 (1849)
Q Consensus 561 s~~~Ll~~~A~~~~~~~~~~~l--~~~l~~~~~~E~~~r~~l~~~gi~~~-~~~~~~~~~~~~~~~~--~~~C~~C~~~~ 635 (1849)
||++|+..+|...........+ .............++...+..+++.. ++......+ ++ +++|..|+++|
T Consensus 474 s~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~c~~ck~~~ 548 (904)
T KOG1246|consen 474 SHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKYERYLLESLP-----DDMLERQCEACKRNC 548 (904)
T ss_pred CHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHHHHHHHHhcc-----chhhHHHHHHhcccH
Confidence 9999999999765332111111 00010001110111111111111111 111001111 13 68999999999
Q ss_pred cccceecccCCCceeeccchhhhccCCCCceEEEEEcCHHHHHHHHHHHhc
Q 000215 636 YLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 686 (1849)
Q Consensus 636 fls~v~c~~~~~~~~CL~h~~~~c~c~~~~~~l~yRy~~~eL~~l~~~~~~ 686 (1849)
|++++.|.|.+.++.|+.|..++|+|+...++++|||++++|..++.+++.
T Consensus 549 ~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~ 599 (904)
T KOG1246|consen 549 FLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQL 599 (904)
T ss_pred hhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhh
Confidence 999999999988999999999999999999999999999999999999855
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-56 Score=539.25 Aligned_cols=214 Identities=39% Similarity=0.732 Sum_probs=190.3
Q ss_pred cccchHHHHHHHHHHhhhccCCC-CcchhhhhhhhhhHhccCCCccccccccCCCCCCCCCCCCCcCCCCCCCccccccc
Q 000215 307 KRYTVESFRRVADRAKKKRFRSG-SASRVQMEKKFWEIVEGAAGNVEVMYGSDLDTSIYGSGFPRVCDHRPESVDANVWN 385 (1849)
Q Consensus 307 k~yTLeeF~~~Ad~~k~~~f~~~-~~~~~~~E~efW~~v~~~~~~v~V~yGaDi~~~~~gSgFp~~~~~~~~~~~~~~~~ 385 (1849)
+.|++.+|+++|+.- +|-..+ ....+++|+.||+.+.. ..+.||||+.+++|.
T Consensus 92 kam~v~q~r~lAns~--~y~tpr~~~d~~dle~kYWKnltf----~~PiYGaD~~gSi~~-------------------- 145 (690)
T KOG0958|consen 92 KAMTVRQFRDLANSD--KYCTPRGSQDFEDLEQKYWKNLTF----DSPIYGADINGSIYD-------------------- 145 (690)
T ss_pred cccChhhhhhhhhhc--ccCCCcccccHHHHHHHHHhcccC----CCCcccccCCCccCc--------------------
Confidence 457777888887762 232222 45568999999999985 458899999988763
Q ss_pred ccCCCCccccCCCCCcchhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHH
Q 000215 386 EYCNSPWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEK 465 (1849)
Q Consensus 386 ~y~~~~WNL~nlp~~~~slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~ 465 (1849)
|....||+++|+..-+ |.+.+..|.|||||+||+||+.+||+||+||+.||||||+|||+||+||+||++|.++||+
T Consensus 146 -~~~~~WNi~~L~tild--~~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfek 222 (690)
T KOG0958|consen 146 -EDLDEWNIARLDTILD--LEECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEK 222 (690)
T ss_pred -ccccccccccccchhc--hhhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHH
Confidence 2356899999986422 1477888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcccCChhhhhhhccccChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchhchh
Q 000215 466 VMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGG 545 (1849)
Q Consensus 466 ~~~~~~p~~~~~~pd~l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g~ 545 (1849)
++.+.+|+...+|++||+|++++++|.+|+++|||+++++|++||||||||++||+|||+||||+|++|||++.|++||.
T Consensus 223 la~~~fp~~~~~C~aFLRHK~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK 302 (690)
T KOG0958|consen 223 LASELFPDSSQGCPAFLRHKMTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGK 302 (690)
T ss_pred HHHhhCCccccCCHHHHhhcccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHH
Q 000215 546 FGAD 549 (1849)
Q Consensus 546 ~~~~ 549 (1849)
.|..
T Consensus 303 ~a~~ 306 (690)
T KOG0958|consen 303 QALL 306 (690)
T ss_pred cccc
Confidence 7764
No 3
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=9.8e-40 Score=395.46 Aligned_cols=318 Identities=24% Similarity=0.376 Sum_probs=288.7
Q ss_pred HHHHHhHHHHh--ccCCChhHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCCCC-----C
Q 000215 727 EQWLSCSLKVL--QGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPG-----S 799 (1849)
Q Consensus 727 ~~Wl~k~~~iL--~~~~~l~~L~~LL~EaE~~~~p~~e~d~lr~l~~~l~eAe~W~e~~~~c~s~~qq~~~~k~-----~ 799 (1849)
+.|.++++++| +..++++.|++||+|||+++||.+ ++|+.|+..+.+|+.|++.|+.+++++++-..+.. +
T Consensus 1 d~W~~k~~~~l~~~~k~~L~~l~~Ll~e~e~~~~~~~--~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~ 78 (335)
T PF08429_consen 1 DTWAEKVKEALEESPKPSLKELRSLLSEGEKIPFPLP--ELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQK 78 (335)
T ss_pred ChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccccc
Confidence 47999999999 445789999999999999999964 45577777777899999999999999988764432 3
Q ss_pred CCccccHHHHHhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHhhcCCCcccccchHHH
Q 000215 800 DSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEINAALSA--CSKISELELLYSRASGLPICIVESEKLS 876 (1849)
Q Consensus 800 ~~~kl~leeL~~Ll~-~~~Lpc~~pe~~~Lke~l~~ve~~~~~a~~aL~~--~~~~~eLe~Ll~~g~~~~V~lpEl~~L~ 876 (1849)
+++++++++|+.|++ +.+|||++||+.+|+++++.+++|+.+|+.+|++ ..++++++.||++|++|+|++||++.|+
T Consensus 79 ~~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~ 158 (335)
T PF08429_consen 79 SRNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLR 158 (335)
T ss_pred ccccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHH
Confidence 567899999999998 9999999999999999999999999999999987 4579999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHHHHHHHHHHhhc-CCCHH
Q 000215 877 QRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET----DMLLKMIGQAESCRARCSEALRG-SMSLK 951 (1849)
Q Consensus 877 ~rle~ak~Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~EA~~l~v~~Pe~----~~Lqell~~aE~we~kA~~lL~~-~~sl~ 951 (1849)
.++++. .|+++|+.++.. +..+||++|+.|+++|..+++ |.. ..|+++++.|+.|+++|+.+|+. .++++
T Consensus 159 ~~l~~~-~W~~~~~~~~~~--~~~~tL~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~ 233 (335)
T PF08429_consen 159 RRLEQL-EWLEEAREILSD--PDRLTLDELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLE 233 (335)
T ss_pred HHHHHH-HHHHHHHHHhcc--ccCCcHHHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999998 599999999753 226899999999999999984 544 48889999999999999999994 59999
Q ss_pred HHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCChhhHHHHH
Q 000215 952 TVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVEL 1031 (1849)
Q Consensus 952 eLe~ll~e~~~iPv~lpel~~Lk~~L~ka~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~L~el~~LE~~L 1031 (1849)
+|++|+.++.+|||++|++..|++++.+|++|+++++.++.. .++.+|++++|++|+.+|+.|+|.++++++||.++
T Consensus 234 ~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~ 310 (335)
T PF08429_consen 234 QLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELVAESEELPVKLEELSDLEKQL 310 (335)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999742 25789999999999999999999999999999999
Q ss_pred HHhh-hHHHHHhhhcCCCCHHHHH
Q 000215 1032 KKAH-CREKALKACDTKMPLDFIR 1054 (1849)
Q Consensus 1032 ~~a~-W~e~a~k~f~kk~sL~~L~ 1054 (1849)
.+++ |+++++++|+++|+.+.|.
T Consensus 311 ~~~~~W~~~~~k~F~k~ns~~~ll 334 (335)
T PF08429_consen 311 KRAEDWMEKAKKLFLKKNSPLHLL 334 (335)
T ss_pred HHHHHHHHHHHHHhcccCchhhhh
Confidence 9998 9999999999999988764
No 4
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=100.00 E-value=2.2e-34 Score=348.91 Aligned_cols=308 Identities=26% Similarity=0.462 Sum_probs=286.2
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCCch-HHHHHHHHHHHHHHHHHHHHhhc----------------
Q 000215 884 VWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET-DMLLKMIGQAESCRARCSEALRG---------------- 946 (1849)
Q Consensus 884 ~Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~EA~~l~v~~Pe~-~~Lqell~~aE~we~kA~~lL~~---------------- 946 (1849)
.|.++++++|+ .+.+++|.+++.|+.||+...+.+|+. ..|+..+..|+.|.++|+.+|..
T Consensus 2 ~W~~k~~~~l~--~~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~~ 79 (335)
T PF08429_consen 2 TWAEKVKEALE--ESPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQKS 79 (335)
T ss_pred hhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCccccccc
Confidence 59999999998 567899999999999999999777777 78889999999999999999964
Q ss_pred --CCCHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCCh
Q 000215 947 --SMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDL 1024 (1849)
Q Consensus 947 --~~sl~eLe~ll~e~~~iPv~lpel~~Lk~~L~ka~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~L~el 1024 (1849)
+.++++|.+|++++.++||.+|++..|++.+..+++|+.++++++.. +..+.++++++|++.|.+|+|++|++
T Consensus 80 ~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~-----~~~~~~~~le~Ll~~g~s~~v~lpel 154 (335)
T PF08429_consen 80 RNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSD-----PESPSLEELEELLEEGESFGVDLPEL 154 (335)
T ss_pred cccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhc-----cccCCHHHHHHHHHhcccCceeChhH
Confidence 27999999999999999999999999999999999999999999951 35678999999999999999999999
Q ss_pred hhHHHHHHHhhhHHHHHhhhcCC--CCHHHHHHHHHhhhccc-hHHHHHHhhhhHHHHHHHhHHHHHHHHhc-cccccch
Q 000215 1025 PLVEVELKKAHCREKALKACDTK--MPLDFIRQVTAEAVILQ-IEREKLFIDLSGVLAAAMRWEERAADILI-HKAQMCE 1100 (1849)
Q Consensus 1025 ~~LE~~L~~a~W~e~a~k~f~kk--~sL~~L~~lL~~g~~l~-~~vEk~~~el~~ll~~a~~WeekA~~~L~-~r~~l~~ 1100 (1849)
+.|+..+.+++|.+++..++... .|++.|+.+|+.|..+. +.+++.+++++.+++.+..|+++|+.+|. ..+++++
T Consensus 155 ~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~ 234 (335)
T PF08429_consen 155 DQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQ 234 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999876 89999999999998876 68899999999999999999999999999 5589999
Q ss_pred HHHHHHHhhcccccCCChHHHHHHHHHHHHHHHhhHHhhhhhcccCCCCCCccchhhHHHHHhccccCccccchhHHHHH
Q 000215 1101 FEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEK 1180 (1849)
Q Consensus 1101 lE~iI~ea~nip~~Lp~~~~Lk~~L~~Ar~Wl~k~~~~~~~~~~~~~~~s~~P~Le~L~~Ll~~~~~LpV~L~E~~~Le~ 1180 (1849)
|++++.++.+||+++|+...|++++.+|++|..+++.+.. ..++.+|++++|+.|++++..|||.+++...|+.
T Consensus 235 Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~------~~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~ 308 (335)
T PF08429_consen 235 LEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLE------QNGSKRPTLDELEELVAESEELPVKLEELSDLEK 308 (335)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhc------ccCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999963 1367899999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHH--hh-hhhcc
Q 000215 1181 VINNCERWQNHASSLLQ--DA-RCLLD 1204 (1849)
Q Consensus 1181 ~i~~a~~W~e~a~~~L~--~~-~~Ll~ 1204 (1849)
++.+++.|.+++..+|. || ++||+
T Consensus 309 ~~~~~~~W~~~~~k~F~k~ns~~~ll~ 335 (335)
T PF08429_consen 309 QLKRAEDWMEKAKKLFLKKNSPLHLLE 335 (335)
T ss_pred HHHHHHHHHHHHHHHhcccCchhhhhC
Confidence 99999999999977554 77 88875
No 5
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.95 E-value=2.1e-29 Score=257.90 Aligned_cols=114 Identities=46% Similarity=0.824 Sum_probs=101.0
Q ss_pred eeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCChhhhhhhccccChhhhhhCC
Q 000215 419 WLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENG 498 (1849)
Q Consensus 419 ~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~pd~l~~~~~~~~P~~L~~~G 498 (1849)
|+|+||.||+|+||+||+.++|+||+|+|++|+||.||++++++|++++++. ....+|+++.+...++.|+.|.++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 8999999999999999999999999999999999999999999999999988 4456788899999999999999999
Q ss_pred CceeecccCCccEEEEcCCccceeeccCccceeeccc
Q 000215 499 VPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF 535 (1849)
Q Consensus 499 Ipv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNf 535 (1849)
||+++++|+|||||||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 6
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.72 E-value=1.3e-17 Score=165.64 Aligned_cols=91 Identities=30% Similarity=0.512 Sum_probs=82.9
Q ss_pred ChhhHHHHHHHHHHHhcCCcccccccccCeeechHHHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHH
Q 000215 99 DSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQL 178 (1849)
Q Consensus 99 ~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~ 178 (1849)
++..|+.+|.+||+. +|+++..+|+|+|++||||+||++|+++|||+.|+++++|.+|++.||++... +.++..|+++
T Consensus 2 ~~~~F~~~L~~F~~~-~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~-~~~~~~lk~~ 79 (93)
T smart00501 2 ERVLFLDRLYKFMEE-RGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTS-TSAASSLRKH 79 (93)
T ss_pred cHHHHHHHHHHHHHH-cCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCccc-chHHHHHHHH
Confidence 357899999999976 89999999999999999999999999999999999999999999999998763 3456699999
Q ss_pred HHHhhhcHHHHHh
Q 000215 179 YYKHLYDYEKYYN 191 (1849)
Q Consensus 179 Y~kyL~pYE~~~~ 191 (1849)
|.+||+|||.|.+
T Consensus 80 Y~k~L~~yE~~~~ 92 (93)
T smart00501 80 YERYLLPFERFLR 92 (93)
T ss_pred HHHHhHHHHHHhh
Confidence 9999999999874
No 7
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.71 E-value=4.2e-18 Score=141.75 Aligned_cols=42 Identities=74% Similarity=1.428 Sum_probs=41.2
Q ss_pred CCCccCCCccccCChHHHHHHhHHHHhhcCcEEEcCCCCCCC
Q 000215 29 SGPVYYPTEDEFKDPLEYICKIRAEAERYGICKIVPPKSWKP 70 (1849)
Q Consensus 29 e~Pvf~Pt~eEF~DPl~yi~~I~~~~~kyGi~KIvPP~~w~P 70 (1849)
++|||+||+|||+||++||++|+++|++|||||||||++|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999998
No 8
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.61 E-value=1.2e-15 Score=151.20 Aligned_cols=86 Identities=33% Similarity=0.505 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHhcCCcccccccccCeeechHHHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHHH
Q 000215 100 SKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQLY 179 (1849)
Q Consensus 100 ~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~Y 179 (1849)
+..|+.+|.+||+. +|.++..+|.|+|++||||+||++|.++|||+.|+++++|.+|++.||++...++. ++.|+++|
T Consensus 7 ~~~F~~~L~~f~~~-~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~-~~~L~~~Y 84 (92)
T PF01388_consen 7 REQFLEQLREFHES-RGTPIDRPPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSA-AQQLRQHY 84 (92)
T ss_dssp HHHHHHHHHHHHHH-TTSSSSS-SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcH-HHHHHHHH
Confidence 67899999999977 89998889999999999999999999999999999999999999999998866654 56899999
Q ss_pred HHhhhcHH
Q 000215 180 YKHLYDYE 187 (1849)
Q Consensus 180 ~kyL~pYE 187 (1849)
++||+|||
T Consensus 85 ~~~L~~fE 92 (92)
T PF01388_consen 85 EKYLLPFE 92 (92)
T ss_dssp HHHTHHHH
T ss_pred HHHhHhhC
Confidence 99999997
No 9
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.48 E-value=9e-15 Score=116.24 Aligned_cols=34 Identities=68% Similarity=1.370 Sum_probs=27.8
Q ss_pred CccCCCccccCChHHHHHHhHHHHhhcCcEEEcC
Q 000215 31 PVYYPTEDEFKDPLEYICKIRAEAERYGICKIVP 64 (1849)
Q Consensus 31 Pvf~Pt~eEF~DPl~yi~~I~~~~~kyGi~KIvP 64 (1849)
||||||+|||+||++||++|++.|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 10
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.36 E-value=4.3e-13 Score=119.46 Aligned_cols=54 Identities=46% Similarity=0.939 Sum_probs=52.2
Q ss_pred cccccccccccceecccCCCceeeccchhhhccCCCCceEEEEEcCHHHHHHHH
Q 000215 628 CIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF 681 (1849)
Q Consensus 628 C~~C~~~~fls~v~c~~~~~~~~CL~h~~~~c~c~~~~~~l~yRy~~~eL~~l~ 681 (1849)
|..|++++|||+|+|+|.+++++||.|+.++|+|++++++|+||||++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999998899999999999999999999999999999999875
No 11
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=99.29 E-value=4e-12 Score=141.35 Aligned_cols=105 Identities=24% Similarity=0.504 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHhHhhhccCCcchhhHHhhhhccCCCCcch--HHHhhhccCCCceEEEeccCCCCCCceee
Q 000215 1648 HYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYL--EKELKSLRARSMLYCICRKPYDEKAMIAC 1725 (1849)
Q Consensus 1648 ~~~~~i~~~~~~~~~w~~~~~k~~~~~g~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~yC~C~~~~~~~~mi~C 1725 (1849)
.++..|...+..+..-...+++ ....+.+.+......+.+|..-+... .-..+...+++.+||+|+++..| .||+|
T Consensus 160 ~~R~n~~~~k~~~p~~~S~r~~-~~t~~sp~v~~t~t~v~e~~~~~s~~~~~vss~d~se~e~lYCfCqqvSyG-qMVaC 237 (271)
T COG5034 160 KKRKNIHNLKRRSPELSSKREV-SFTLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYG-QMVAC 237 (271)
T ss_pred HHHHhhcccccCCcchhhhccC-CccCCCCCcccchhhhhcccCCCCccccCcCccccccCceeEEEecccccc-cceec
Confidence 4445555555444444332222 22223333333334444555433222 12233445788999999988775 79999
Q ss_pred c--CCC-ceEEcccccccCCCC-ceecCCCcCC
Q 000215 1726 Y--QCD-EWYHIDCVKLLSAPE-IYICAACKPQ 1754 (1849)
Q Consensus 1726 d--~C~-~W~H~~Cvg~~~~~~-~~~C~~C~~~ 1754 (1849)
| .|+ ||||+.|||+.++|+ +||||.|+..
T Consensus 238 Dn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 238 DNANCKREWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCCCCchhheeccccccCCCCCCcEeCHHhHhc
Confidence 9 798 999999999999997 9999999863
No 12
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.19 E-value=1.3e-11 Score=111.49 Aligned_cols=56 Identities=39% Similarity=0.581 Sum_probs=53.7
Q ss_pred CccccCCCCCcchhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCC
Q 000215 391 PWNLNNLPKLKGSILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDP 449 (1849)
Q Consensus 391 ~WNL~nlp~~~~slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~ 449 (1849)
+||++++|. +++++++++.+++|+++||+|+||.+|+|+||+|++.+ +||+|.|++
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 799999999 89999999999999999999999999999999999998 999999863
No 13
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.02 E-value=3.1e-10 Score=142.57 Aligned_cols=91 Identities=31% Similarity=0.505 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHHHhcCCcccccccccCeeechHHHHHHHhhcCChHhhhcccchHHHHhHhcCCC-ccchhhHHHHHH
Q 000215 99 DSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNR-KISDCARHVLCQ 177 (1849)
Q Consensus 99 ~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~-~~~s~~~~~Lk~ 177 (1849)
+++.|++.+.+||+. +|+++++-|+|+|++||||.||..|+++||++.|+..|+|++|+..|.+|. .+++. ++.|++
T Consensus 163 ~~eeF~~dl~~f~~~-~~~~~~~iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~~l~~pt~tiTsa-af~lr~ 240 (512)
T KOG2744|consen 163 SSEEFMEDLRRFMKK-RGTKVKSIPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVIDGLNFPTPTITSA-AFTLRK 240 (512)
T ss_pred cHHHHHHHHHHHHHH-hCCcceeccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhccccCCCcccchH-HHHHHH
Confidence 578899999999987 899999777889999999999999999999999999999999999999998 76664 459999
Q ss_pred HHHHhhhcHHHHHh
Q 000215 178 LYYKHLYDYEKYYN 191 (1849)
Q Consensus 178 ~Y~kyL~pYE~~~~ 191 (1849)
+|.|+|++||.-..
T Consensus 241 ~y~K~L~~ye~~~~ 254 (512)
T KOG2744|consen 241 QYLKLLFEYECEFE 254 (512)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997654
No 14
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=99.01 E-value=1.1e-10 Score=137.68 Aligned_cols=54 Identities=33% Similarity=0.866 Sum_probs=45.3
Q ss_pred hccCCCceEEEeccCCCCCCceeecC--CC-ceEEcccccccCCC-CceecCCCcCCCC
Q 000215 1702 SLRARSMLYCICRKPYDEKAMIACYQ--CD-EWYHIDCVKLLSAP-EIYICAACKPQAE 1756 (1849)
Q Consensus 1702 ~~~~~~~~yC~C~~~~~~~~mi~Cd~--C~-~W~H~~Cvg~~~~~-~~~~C~~C~~~~~ 1756 (1849)
..+.+++.||+|++... +.||+||+ |. +|||+.||||+.+| ++||||.|+....
T Consensus 213 ~~d~~e~~yC~Cnqvsy-g~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 213 AVDPDEPTYCICNQVSY-GKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccCCCCCEEEEeccccc-ccccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 34556789999995544 58999996 99 99999999999887 4999999998654
No 15
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.73 E-value=3.5e-09 Score=118.28 Aligned_cols=48 Identities=42% Similarity=1.192 Sum_probs=45.3
Q ss_pred hhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCccccccc
Q 000215 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 248 ~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
.|.+||-.++.|.+|+||.||+|||||||+|||.+.|.|.|.|.-|+.
T Consensus 283 ~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred eeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 488999999999999999999999999999999999999999999974
No 16
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.69 E-value=4.6e-09 Score=130.02 Aligned_cols=51 Identities=43% Similarity=1.011 Sum_probs=48.1
Q ss_pred hhhhcccCCCCCCceecccccCCc-cccccCCCCCCCCCCCCCcccccccCC
Q 000215 247 QICEQCKSGLHGEVMLLCDRCNKG-WHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1849)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~-yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1849)
..|.+|...+++|.|||||+|+++ ||+|||+|+|-+||-+.|||++|+-.+
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 359999999999999999999999 999999999999999999999998654
No 17
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.56 E-value=5.6e-08 Score=132.61 Aligned_cols=281 Identities=17% Similarity=0.128 Sum_probs=187.1
Q ss_pred CCCccccCCCCCc-----c-hhhhhcccccCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHH
Q 000215 389 NSPWNLNNLPKLK-----G-SILRMVHHNITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGA 462 (1849)
Q Consensus 389 ~~~WNL~nlp~~~-----~-slL~~~~~~i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~k 462 (1849)
..||...-.-.++ | +++.|+++.+-||++..+|+..++|.+.-|.|+..+.|+|.+++.+.+.||+||.+++..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 3566665544333 4 889999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHhhCCCcccCChhhhhhhcccc-ChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCc-
Q 000215 463 FEKVMRSSLPDLFDAQPDLLFQLVTML-NPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW- 540 (1849)
Q Consensus 463 fe~~~~~~~p~~~~~~pd~l~~~~~~~-~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~W- 540 (1849)
+++.+.+.--.+.. ...|. +-..|...+|++++++|++|++|.++.|+|||....||..+.++|.+..+.
T Consensus 684 ~~~~~~~~~~~~~~--------~~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNLKYSD--------SSVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhccccccc--------hhccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 99988775322211 12344 557889999999999999999999999999999999999999999999885
Q ss_pred -hhchhhhHHHHHHhcCCCCCChHHHHHHHhhcc--CCCCcHHHHHH-HHHHHHHHHHHHHHHHHHcCccccccCCCCCC
Q 000215 541 -LPHGGFGADLYQQYHKAAVLSHEELLCVVAKSD--LDSKVSPYLKR-ELLRVYTKERMWRERLWRKGIIKSTPMGPRKC 616 (1849)
Q Consensus 541 -l~~g~~~~~~y~~~~~~~vfs~~~Ll~~~A~~~--~~~~~~~~l~~-~l~~~~~~E~~~r~~l~~~gi~~~~~~~~~~~ 616 (1849)
+......+.+........++++..+-|.+|+.. ++........+ .+.+....-+...+.....+-.... ..
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~~~~~-----~~ 830 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEKEVMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFHEICV-----AV 830 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhcchhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhhheec-----cc
Confidence 444445556665667889999999999999863 33332222222 2222222212222222211100000 01
Q ss_pred CCCCCCccccccccccccccccceec-ccCCCceeeccchhhh-cc-CC-CCceEEEEEcCHHHHHHHHHHH
Q 000215 617 PEYVGTEEDPTCIICRQYLYLSAVAC-RCRPAAFVCLEHWEHL-CE-CK-TRKLHLLYRHTLAELYDLFLTV 684 (1849)
Q Consensus 617 ~~~~~~~~~~~C~~C~~~~fls~v~c-~~~~~~~~CL~h~~~~-c~-c~-~~~~~l~yRy~~~eL~~l~~~~ 684 (1849)
+... +....|..|...++-....- .-.+...+|+.+...+ |. +. ....+++..++.+++...++.+
T Consensus 831 ~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 900 (904)
T KOG1246|consen 831 PEKV--ELSHLCSRCERPRLAVIFVLDPNLKPTPYRVLENEKLRCTIEQAIWLQVALQQFSSEDLSLILDAF 900 (904)
T ss_pred CCCc--cccchhhhccccchheeeeeccCCCCCccccccccccccchhcchHHHHHHHhhhhhhhhhhhhhc
Confidence 1111 12348999999998433332 2223445666554321 10 11 1233455555566655555544
No 18
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.39 E-value=7.2e-08 Score=85.17 Aligned_cols=44 Identities=36% Similarity=1.055 Sum_probs=38.6
Q ss_pred EE-EeccCCCCCCceeecCCCceEEcccccccCC-----CCceecCCCcC
Q 000215 1710 YC-ICRKPYDEKAMIACYQCDEWYHIDCVKLLSA-----PEIYICAACKP 1753 (1849)
Q Consensus 1710 yC-~C~~~~~~~~mi~Cd~C~~W~H~~Cvg~~~~-----~~~~~C~~C~~ 1753 (1849)
|| +|+++.+++.||+||.|+.|||..|+|+... ...|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 68 9998777889999999999999999999964 23899999975
No 19
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.15 E-value=6.5e-07 Score=79.12 Aligned_cols=48 Identities=38% Similarity=0.996 Sum_probs=42.7
Q ss_pred hhhcccCCCCCCceecccccCCccccccCCCCCC--CCCCCCCccccccc
Q 000215 248 ICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLK--HVPRGNWYCLECLN 295 (1849)
Q Consensus 248 ~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~--~vP~gdW~C~~C~~ 295 (1849)
+|.+|++.++++.|+.||.|+..||++|+.|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4889999888899999999999999999999987 66677999999964
No 20
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.03 E-value=2.2e-06 Score=90.81 Aligned_cols=28 Identities=50% Similarity=1.210 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCCCCCCcccccccCC
Q 000215 270 GWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1849)
Q Consensus 270 ~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1849)
|||++||+|||+.||+|+|+||.|....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~ 28 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEK 28 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCC
Confidence 7999999999999999999999998753
No 22
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.02 E-value=2.1e-06 Score=107.29 Aligned_cols=50 Identities=32% Similarity=0.943 Sum_probs=44.5
Q ss_pred hhhhhcccCCCCCCceecccccCCccccccCCCC--CCCCCCCCCccccccc
Q 000215 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPP--LKHVPRGNWYCLECLN 295 (1849)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PP--L~~vP~gdW~C~~C~~ 295 (1849)
.++|..|++...-..+++||+|+.+||++||+|| .+.+|+|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4589999988655557999999999999999999 5889999999999975
No 23
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=97.87 E-value=1.5e-05 Score=96.92 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=77.9
Q ss_pred cccchhhhhhhccCChhhHHHHHHHHHHHhcCCcccccccccCeeechHHHHHHHhhcCChHhhhcccchHHHHhHhcCC
Q 000215 85 TQAIHQLQARSAACDSKTFELEYSRFLKEHVGTKLNKKVFFEGEELDLCKLFNAAKRFGGYDKVVKEKKWGEVFRFVRSN 164 (1849)
Q Consensus 85 ~Q~LneL~~~~r~~~~~~F~~~l~kFl~~~~G~~Lk~pp~I~gr~LDLy~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~ 164 (1849)
+-+|.+|.... +++...+.|..|+++ +.+++...+.++.++||||+||..|...||+..|+++| ++++.-|+
T Consensus 282 iTklYelg~qp---~r~~wvDR~raF~ee-~~Sp~t~~p~~gakPldl~rlYvsvke~gg~~~v~knk--rd~a~~lg-- 353 (532)
T KOG2510|consen 282 ITKLYELGGQP---ERKEWVDRLRAFTEE-RASPMTNLPAVGAKPLDLYRLYVSVKEIGGLTQVNKNK--RDLATNLG-- 353 (532)
T ss_pred cccccccccCc---chhhHHHHHHHHHHh-hcCcccccccccccchhHHHHHHHHHHhccceeeccch--hhhhhccc--
Confidence 55566666532 456788889999976 78888888889999999999999999999999999999 88887776
Q ss_pred CccchhhHHHHHHHHHHhhhcHHHH
Q 000215 165 RKISDCARHVLCQLYYKHLYDYEKY 189 (1849)
Q Consensus 165 ~~~~s~~~~~Lk~~Y~kyL~pYE~~ 189 (1849)
+++.++||.+|.+||+.||-.
T Consensus 354 ----ssaa~~l~k~y~~~lf~fec~ 374 (532)
T KOG2510|consen 354 ----SSAASSLKKQYIQYLFAFECK 374 (532)
T ss_pred ----hHHHHHHHHHHHHHHHhhcee
Confidence 445679999999999999863
No 24
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=97.84 E-value=1.4e-06 Score=105.81 Aligned_cols=61 Identities=21% Similarity=0.474 Sum_probs=53.9
Q ss_pred ccccccCCCCccceeecccccccccccc--CCCccccccccccccCCcccccccccccccCCC
Q 000215 1452 LCMCCESDSKELEFLICSACKDCYHLQC--LRPTEVDRNHAEAYICPYCQYFESESVSQFGGS 1512 (1849)
Q Consensus 1452 ~C~c~~~~~~~~~~~~C~~C~d~yH~~C--v~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~~ 1512 (1849)
.|.|-....++..|+.|+.|-+|||+.| |+...........|.|.-|.....+....+++.
T Consensus 62 ~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~~~~~~~l~ 124 (345)
T KOG1632|consen 62 YCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDGMSESDGLS 124 (345)
T ss_pred hhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhhhhhhhccce
Confidence 6887766666668999999999999999 999999999999999999999988877777666
No 25
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.80 E-value=8.2e-06 Score=92.26 Aligned_cols=47 Identities=34% Similarity=0.960 Sum_probs=41.7
Q ss_pred hhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCccc-cccc
Q 000215 247 QICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCL-ECLN 295 (1849)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~-~C~~ 295 (1849)
..|.+|+...+++.+++||.||+||||||.. |..+|.|.|+|. .|..
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCRE 362 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHH
Confidence 3588899998999999999999999999998 899999999998 3543
No 26
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.47 E-value=4.3e-05 Score=95.82 Aligned_cols=49 Identities=39% Similarity=1.059 Sum_probs=46.1
Q ss_pred hhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCccccccc
Q 000215 247 QICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 247 ~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
.+|+.|+.+.++.++++|+.||-+||+||..||++.||.|.|+|+.|.-
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 4799999999999999999999999999999999999999999998854
No 28
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.41 E-value=3.3e-05 Score=107.50 Aligned_cols=52 Identities=40% Similarity=1.093 Sum_probs=48.3
Q ss_pred hhhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCcccccccCC
Q 000215 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1849)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1849)
...|++|.+....+.|++||+|+.+||+||+.|.+.++|.|+|+||.|....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3569999999988999999999999999999999999999999999998744
No 29
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.32 E-value=9.3e-05 Score=88.02 Aligned_cols=51 Identities=20% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCCCcccccccCCCCccceeeccc--cc-cccccccCCCccccccccccccCCcccccc
Q 000215 1447 SVSMTLCMCCESDSKELEFLICSA--CK-DCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1502 (1849)
Q Consensus 1447 ~~~~~~C~c~~~~~~~~~~~~C~~--C~-d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~ 1502 (1849)
-++..+|+|+ ...-.+||.||. |. +|||..|||.+ ..+.+. |-||.|....
T Consensus 216 ~~e~~yC~Cn--qvsyg~Mi~CDn~~C~~eWFH~~CVGL~-~~Pkgk--WyC~~C~~~~ 269 (274)
T KOG1973|consen 216 PDEPTYCICN--QVSYGKMIGCDNPGCPIEWFHFTCVGLK-TKPKGK--WYCPRCKAEN 269 (274)
T ss_pred CCCCEEEEec--ccccccccccCCCCCCcceEEEeccccc-cCCCCc--ccchhhhhhh
Confidence 3567999999 666667999999 99 99999999944 333333 9999996543
No 30
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.98 E-value=0.00024 Score=85.92 Aligned_cols=48 Identities=38% Similarity=0.985 Sum_probs=44.4
Q ss_pred hhhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCC----CCccccc
Q 000215 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRG----NWYCLEC 293 (1849)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~g----dW~C~~C 293 (1849)
...|-+|.+..+...+++||.|+..||+-||+|||+..|+. -|.|..|
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccc
Confidence 45699999999888999999999999999999999999975 4999999
No 31
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.0019 Score=80.25 Aligned_cols=49 Identities=27% Similarity=0.760 Sum_probs=39.6
Q ss_pred CceEEEeccCCCCCCceeecCCCceEEcccccccCCC----C---ceecCCCcCCC
Q 000215 1707 SMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP----E---IYICAACKPQA 1755 (1849)
Q Consensus 1707 ~~~yC~C~~~~~~~~mi~Cd~C~~W~H~~Cvg~~~~~----~---~~~C~~C~~~~ 1755 (1849)
+..||.|+++..+--||+|+.|..|||..|.--...+ | .|+|..|....
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 3578888888776579999999999999998765432 2 89999998653
No 32
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.11 E-value=0.0081 Score=71.53 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=78.7
Q ss_pred eeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCChhhhhhhccccChhhhhhCC
Q 000215 419 WLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENG 498 (1849)
Q Consensus 419 ~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~pd~l~~~~~~~~P~~L~~~G 498 (1849)
-.|+|-.+|+++.|.+=...+|---|..| -|.|..+||....++- +...+ .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~----dr~gn----lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLA----DRYGN----LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhh----hhccC----cC-------Cccccccccccc
Confidence 46999999999999776656665556677 8999999999855443 33222 11 112224566677
Q ss_pred CceeecccCCccEEEEcCCccceeeccCccceeecccCCCC
Q 000215 499 VPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 539 (1849)
Q Consensus 499 Ipv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~ 539 (1849)
.|.+.+.|+|||.|++--|=||.+.|.|-+++..=|..-..
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 88899999999999999999999999999998886655443
No 33
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.01 E-value=0.0025 Score=83.27 Aligned_cols=46 Identities=37% Similarity=1.001 Sum_probs=41.5
Q ss_pred hhhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCcccccc
Q 000215 246 DQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECL 294 (1849)
Q Consensus 246 ~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~ 294 (1849)
.+.|.+|+.+. .+|.||.|..+||.+|++||+..+|.|+|.|+.|.
T Consensus 47 ~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~ 92 (696)
T KOG0383|consen 47 QEACRICADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCF 92 (696)
T ss_pred hhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeec
Confidence 46799998774 48889999999999999999999999999999993
No 34
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=96.00 E-value=0.002 Score=78.98 Aligned_cols=54 Identities=35% Similarity=0.845 Sum_probs=45.5
Q ss_pred ccCCCceEEEeccCCCCC-CceeecCCCceEEccc--ccccCC----CCceecCCCcCCCC
Q 000215 1703 LRARSMLYCICRKPYDEK-AMIACYQCDEWYHIDC--VKLLSA----PEIYICAACKPQAE 1756 (1849)
Q Consensus 1703 ~~~~~~~yC~C~~~~~~~-~mi~Cd~C~~W~H~~C--vg~~~~----~~~~~C~~C~~~~~ 1756 (1849)
..+....||.|..+.+.+ +|++||.|.+|||++| ||+... ++.|+|..|.....
T Consensus 55 ~~a~~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 55 LKALTQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred cHhhhhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 344555699999999865 8999999999999999 999863 46999999997654
No 35
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.98 E-value=0.0034 Score=84.89 Aligned_cols=54 Identities=35% Similarity=0.843 Sum_probs=46.9
Q ss_pred chhhhhhhcccCCCCC--CceecccccCCccccccCCCCCCCCCCCCCcccccccCCC
Q 000215 243 DELDQICEQCKSGLHG--EVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDK 298 (1849)
Q Consensus 243 ~~~~~~C~~C~~~~~~--~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~~ 298 (1849)
.+.|.+|.+|..+.-. +.++.||+|+..+|.+|-. ..-||.|.|.|-.|+.++.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcC
Confidence 3557899999998765 8899999999999999998 4568999999999998764
No 36
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.82 E-value=0.0058 Score=71.23 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=67.6
Q ss_pred cceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCccc----CChhhhhhhccccChh
Q 000215 417 VPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFD----AQPDLLFQLVTMLNPS 492 (1849)
Q Consensus 417 ~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~----~~pd~l~~~~~~~~P~ 492 (1849)
..+|+||..+|.+.+|.+. ..+++-+..| .|.|+-+||++...+... +..-. ...|+ .....-..|.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l~~~-----~~~~~~~~~~~~d~-~~~d~~~~p~ 202 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNLYPR-----PDSHGGTVFSWVDP-DNPDLERFPK 202 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGCTBE-----TTTST-TCBBSS-T-TS--TTT-CG
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCccccccccc-----eecccccceeeeec-cChhhhhhhh
Confidence 5669999999999999987 4567777788 699999999987643111 10000 00000 0000011122
Q ss_pred hhhhCCCceeecccCCccEEEEcCCccceeecc---CccceeecccCCC
Q 000215 493 VLVENGVPVYSVLQEPGNFVITFPRSYHAGFNF---GLNCAEAVNFAPA 538 (1849)
Q Consensus 493 ~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~---G~n~~eavNfa~~ 538 (1849)
. ..++.+.++++|||.+++-+|-+|.+.|. ++|++.+++|-++
T Consensus 203 ~---~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 203 F---RKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp G---GG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred h---ccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 2 23489999999999999999999999999 4688877777654
No 37
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.16 E-value=0.014 Score=68.07 Aligned_cols=135 Identities=20% Similarity=0.226 Sum_probs=91.0
Q ss_pred cchhhhhcccc-cCCcccceeeeccccccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCCh
Q 000215 401 KGSILRMVHHN-ITGVMVPWLYLGMLFSAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQP 479 (1849)
Q Consensus 401 ~~slL~~~~~~-i~Gv~~P~lyvGm~fS~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~p 479 (1849)
...++++++.. =| ---|+-+|-..|.+.||++...+..-|-+..| .|.|.-+|+.--.-+-++. ++.-.+||
T Consensus 165 ~dDlF~y~g~e~RP--pyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~ 237 (407)
T KOG2130|consen 165 RDDLFQYLGEERRP--PYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQP 237 (407)
T ss_pred hHHHHHhcCcccCC--CceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCC
Confidence 35677777643 11 23599999999999999999999999999988 8999999987643222221 22222344
Q ss_pred hh---hhhhccccChhhhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchh
Q 000215 480 DL---LFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLP 542 (1849)
Q Consensus 480 d~---l~~~~~~~~P~~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~ 542 (1849)
+- .++..+.-.-.-+-..--.-.-++|.|||.|++--|=.|.+.|.-.++|..-|||...=++
T Consensus 238 de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 238 DEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred cceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 32 1221111100000011112236889999999999999999999999999999999876544
No 38
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.89 E-value=0.014 Score=71.20 Aligned_cols=54 Identities=31% Similarity=0.903 Sum_probs=46.2
Q ss_pred cchhhhhhhcccCCCC--CCceecccccCCccccccCCCCCCCCCCCCCcccccccCC
Q 000215 242 EDELDQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSD 297 (1849)
Q Consensus 242 e~~~~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~ 297 (1849)
+++.++.|.+|...+. ...++.||+|+-.-|..|-. +.-+|.|.|.|-+|+.+.
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 3567889999998764 36799999999999999987 457899999999999865
No 39
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.53 E-value=0.011 Score=67.78 Aligned_cols=45 Identities=33% Similarity=0.642 Sum_probs=39.5
Q ss_pred EeccCCCCCCceeecCCCceEEcccccccCCCC-ceecC-CCcCCCC
Q 000215 1712 ICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPE-IYICA-ACKPQAE 1756 (1849)
Q Consensus 1712 ~C~~~~~~~~mi~Cd~C~~W~H~~Cvg~~~~~~-~~~C~-~C~~~~~ 1756 (1849)
||.+|.-...|+.||.|+.=||.-|||+..-|. .|+|. .|...+.
T Consensus 319 IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~~~~ 365 (381)
T KOG1512|consen 319 ICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCREATL 365 (381)
T ss_pred ccCCcccchheeccccccCCCCccccccccccCccchhhhHHHHhcC
Confidence 899999988999999999999999999999775 99998 4665444
No 40
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.19 E-value=0.017 Score=72.04 Aligned_cols=52 Identities=33% Similarity=0.767 Sum_probs=42.7
Q ss_pred hhhhhcccCCCC--CCceecccccCCccccccCCCCCCC----CCCCCCcccccccCC
Q 000215 246 DQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKH----VPRGNWYCLECLNSD 297 (1849)
Q Consensus 246 ~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~----vP~gdW~C~~C~~~~ 297 (1849)
+..|-+|..|.. +.+||.|++|...||.-|..|+.+. =|.+.|||..|..+.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 445999987754 4689999999999999999988533 466789999998865
No 41
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=93.88 E-value=0.029 Score=64.22 Aligned_cols=42 Identities=40% Similarity=1.042 Sum_probs=33.3
Q ss_pred cccCCCCCCceeccc--ccCC-ccccccCCCCCCCCCCCCCccccccc
Q 000215 251 QCKSGLHGEVMLLCD--RCNK-GWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 251 ~C~~~~~~~~lLlCD--~Cd~-~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
.|.+..-| .|+-|| .|.. .||+-|.. |+..|+|-|||+.|..
T Consensus 225 fCqqvSyG-qMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 225 FCQQVSYG-QMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred Eecccccc-cceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 35555543 499999 5655 79999988 8999999999999964
No 42
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=93.63 E-value=0.035 Score=65.23 Aligned_cols=32 Identities=34% Similarity=1.169 Sum_probs=26.8
Q ss_pred eEEEeccCCCC------CCceeecCCCceEE-ccccccc
Q 000215 1709 LYCICRKPYDE------KAMIACYQCDEWYH-IDCVKLL 1740 (1849)
Q Consensus 1709 ~yC~C~~~~~~------~~mi~Cd~C~~W~H-~~Cvg~~ 1740 (1849)
.||+|.+||++ +.|+||-.|++||| -.|+--+
T Consensus 129 ~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 129 LFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred eeEEecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 79999999987 57999999999999 5555443
No 43
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.22 E-value=0.019 Score=47.43 Aligned_cols=32 Identities=22% Similarity=0.736 Sum_probs=19.2
Q ss_pred CceeecCCCceEEcccccccCCCC--ceecCCCc
Q 000215 1721 AMIACYQCDEWYHIDCVKLLSAPE--IYICAACK 1752 (1849)
Q Consensus 1721 ~mi~Cd~C~~W~H~~Cvg~~~~~~--~~~C~~C~ 1752 (1849)
.||.|+.|+-.+|..|-|+...++ .|+|..|+
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 699999999999999999998764 69998874
No 44
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=93.15 E-value=0.039 Score=71.76 Aligned_cols=52 Identities=35% Similarity=0.809 Sum_probs=45.4
Q ss_pred CCCceEEEeccCCC-CCCceeecCCCceEEcccccccCC--CCceecCCCcCCCC
Q 000215 1705 ARSMLYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSA--PEIYICAACKPQAE 1756 (1849)
Q Consensus 1705 ~~~~~yC~C~~~~~-~~~mi~Cd~C~~W~H~~Cvg~~~~--~~~~~C~~C~~~~~ 1756 (1849)
.+...-|+|+..++ +++||+|+.|..|-|.-|+|+... |+.|.|..|....-
T Consensus 83 ~~~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~ 137 (508)
T KOG1844|consen 83 AREISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNK 137 (508)
T ss_pred cCcccccccccccCCCceeeCCcccCcccCceeeeecCCCCchhceeeeeccccc
Confidence 35667999998888 899999999999999999999763 57999999998654
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.92 E-value=0.054 Score=69.45 Aligned_cols=49 Identities=22% Similarity=0.575 Sum_probs=39.7
Q ss_pred ceEE-EeccCCCCCCceeecCCCce-EEcccccccC---CCCceecCCCcCCCC
Q 000215 1708 MLYC-ICRKPYDEKAMIACYQCDEW-YHIDCVKLLS---APEIYICAACKPQAE 1756 (1849)
Q Consensus 1708 ~~yC-~C~~~~~~~~mi~Cd~C~~W-~H~~Cvg~~~---~~~~~~C~~C~~~~~ 1756 (1849)
.+-| ||..++....||-||.|+.= ||..|+...- +...|||++|...+-
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~ 268 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEI 268 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhhh
Confidence 3455 89888877899999999954 9999999864 346999999987543
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.79 E-value=55 Score=45.38 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHh--CCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000215 948 MSLKTVELLLQEL--GDFTVNMPELELLKQYHSDAIFWIARLNDILV 992 (1849)
Q Consensus 948 ~sl~eLe~ll~e~--~~iPv~lpel~~Lk~~L~ka~eW~~~a~~ll~ 992 (1849)
.+.++++.+.+++ -.||....++..|...++...+=+.+|++||.
T Consensus 1489 adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1489 ADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred CCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5666666666664 45666666666666666666666666666664
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.19 E-value=28 Score=48.00 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=16.5
Q ss_pred hhhCCCceeecccCCccEEEEcCCcc
Q 000215 494 LVENGVPVYSVLQEPGNFVITFPRSY 519 (1849)
Q Consensus 494 L~~~GIpv~~~~Q~pGefVitfP~ay 519 (1849)
+...||-=++..|.+.-|.=.||..-
T Consensus 1135 ~C~~Gv~G~rCdqCaRgy~G~fP~C~ 1160 (1758)
T KOG0994|consen 1135 VCRPGVGGPRCDQCARGYSGQFPVCV 1160 (1758)
T ss_pred eecCCCCCcchhhhhhhhcCCCCCCc
Confidence 34456666677777766666666643
No 48
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=91.81 E-value=0.12 Score=66.43 Aligned_cols=50 Identities=32% Similarity=0.806 Sum_probs=41.7
Q ss_pred CceEE-EeccCCCC--CCceeecCCCceEEcccccccCCCC-ceecCCCcCCCC
Q 000215 1707 SMLYC-ICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQAE 1756 (1849)
Q Consensus 1707 ~~~yC-~C~~~~~~--~~mi~Cd~C~~W~H~~Cvg~~~~~~-~~~C~~C~~~~~ 1756 (1849)
+.+.| +|+.|+.+ ..||.||.|+-=.|..|-||.+.|+ .|.|.-|.-.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ 323 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIE 323 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCC
Confidence 55667 99988764 5699999999999999999999775 899998876533
No 49
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=89.70 E-value=0.13 Score=66.17 Aligned_cols=49 Identities=37% Similarity=0.878 Sum_probs=42.9
Q ss_pred hhhhhcccCCCC--CCceecccccCCccccccCCCCCCCCCCCCCcccccccC
Q 000215 246 DQICEQCKSGLH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNS 296 (1849)
Q Consensus 246 ~~~C~~C~~~~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~ 296 (1849)
+-+|-+|..++. ++.|++||.|+---|+-|-. +..+|.|-|.|..|..+
T Consensus 271 dviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 567999998864 56899999999999999987 88999999999998654
No 50
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=88.90 E-value=0.31 Score=64.10 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=84.0
Q ss_pred eeEEecCCCcHHHHHHHHHhhCCCcccCC---hhhhhhhccccChh---h-hhhCCCceeecccCCccEEEEcCCcccee
Q 000215 450 KCWYSVPGSEAGAFEKVMRSSLPDLFDAQ---PDLLFQLVTMLNPS---V-LVENGVPVYSVLQEPGNFVITFPRSYHAG 522 (1849)
Q Consensus 450 K~WY~VP~~~~~kfe~~~~~~~p~~~~~~---pd~l~~~~~~~~P~---~-L~~~GIpv~~~~Q~pGefVitfP~ayH~g 522 (1849)
-.|=..+..++.|+++++++.-++.-... -+-+|-+.+.++-. . ..+.||.-..++|..||.||+-.||.|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 57999999999999999999866532211 12345555666553 2 34479999999999999999999999999
Q ss_pred eccCccceeecccCCCCchhchhhhHHHHHHhcCCCCCChH
Q 000215 523 FNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHE 563 (1849)
Q Consensus 523 ~n~G~n~~eavNfa~~~Wl~~g~~~~~~y~~~~~~~vfs~~ 563 (1849)
.|.--++..|+-|..|.-+.....-.+.|+.+. ...+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999987765444444444322 2256664
No 51
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=87.35 E-value=0.46 Score=65.24 Aligned_cols=54 Identities=22% Similarity=0.567 Sum_probs=43.9
Q ss_pred ccCCCceEEEeccCCCC--CCceeecCCCceEEcccccccCCCC-ceecCCCcCCCC
Q 000215 1703 LRARSMLYCICRKPYDE--KAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQAE 1756 (1849)
Q Consensus 1703 ~~~~~~~yC~C~~~~~~--~~mi~Cd~C~~W~H~~Cvg~~~~~~-~~~C~~C~~~~~ 1756 (1849)
+-+...++|||...... .+-|.||.|+-=+|.+|+|+...++ .|.|-.|-....
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence 33566789999766554 7899999999999999999887665 999999976543
No 52
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=86.38 E-value=2.3 Score=53.25 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhccccchhHHHHHHHHHhcCcccccChhHHHHHHHHHhhHHHHHHhhhhcccc---cCCCCchH-HHHHH
Q 000215 1354 LWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTS---VGDKNSLL-GLLQK 1429 (1849)
Q Consensus 1354 ~Wq~r~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~c~e~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~sl~-~~l~~ 1429 (1849)
.-++-+|.++..++-.--+..||++.+...+++- | .+....+|- ++.+..+.... ...+.+++ ..|..
T Consensus 22 ~lk~~lr~i~~~~~~r~e~~~lQ~~l~~RsDLt~---~---~L~~~hr~Q--LEilVAiktG~~~fl~~~~~~~~~~Lve 93 (446)
T PF07227_consen 22 ELKEYLREILEGPEKREEFVALQKLLQRRSDLTS---E---TLSKAHRVQ--LEILVAIKTGIQAFLHPSISISQSELVE 93 (446)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhccccCCH---H---HHhHhHHHH--HHHHHHHhhCcHHHhCCCCCcChHHHHH
Confidence 4566778888887633478888888888888843 3 222222221 23333331111 11223333 12222
Q ss_pred H-H----hhhccceeeecCCCCC----CCCcccccc------cC--CCCccceeeccccccccccccC--------CCcc
Q 000215 1430 I-K----QSVHRSLYIYNKPHGS----VSMTLCMCC------ES--DSKELEFLICSACKDCYHLQCL--------RPTE 1484 (1849)
Q Consensus 1430 ~-~----~~~~~~~~~~~~~~~~----~~~~~C~c~------~~--~~~~~~~~~C~~C~d~yH~~Cv--------~~~~ 1484 (1849)
| + +++-=...|=.+|++| ...+||.-| .. ..++--||.|+.|++|=|..|- |++.
T Consensus 94 iFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~ 173 (446)
T PF07227_consen 94 IFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSV 173 (446)
T ss_pred HHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccC
Confidence 2 1 2232223344677776 366887632 22 3456667999999999999993 2222
Q ss_pred ccc--cccccccCCcccccc
Q 000215 1485 VDR--NHAEAYICPYCQYFE 1502 (1849)
Q Consensus 1485 ~~~--~~~~~~~Cp~C~~~~ 1502 (1849)
+.. ...-.|.|-.|.+..
T Consensus 174 ~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 174 KGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred CCCCccCceEEEccCCCChh
Confidence 222 124489999996654
No 53
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.34 E-value=0.47 Score=60.98 Aligned_cols=79 Identities=22% Similarity=0.457 Sum_probs=49.2
Q ss_pred CchHHHHHHHHhh--hccceeeecCCCCCCC-CcccccccCCCCccce---eeccccccccccccCCCcc-ccccccccc
Q 000215 1421 NSLLGLLQKIKQS--VHRSLYIYNKPHGSVS-MTLCMCCESDSKELEF---LICSACKDCYHLQCLRPTE-VDRNHAEAY 1493 (1849)
Q Consensus 1421 ~sl~~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~C~c~~~~~~~~~~---~~C~~C~d~yH~~Cv~~~~-~~~~~~~~~ 1493 (1849)
-||..+|+.+... +.-+...|+..-...+ ..||.-|- +...| |.|+.|-.-||+.|++|.. ...--...|
T Consensus 221 ~s~~~hl~t~s~~~t~~e~r~~~D~~~~~~~~~~fCsaCn---~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W 297 (613)
T KOG4299|consen 221 RSLPRHLETESKEGTVEEKRRERDKNISVEDIEDFCSACN---GSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSW 297 (613)
T ss_pred hhhhhhhhhhhhhccchhhhhhhccccccCCHHHHHHHhC---CccccccceeecCCchHHHHhhcCCCCCcccCCCCcc
Confidence 5666666665544 3333334433332222 26999882 33344 9999999999999999651 112222389
Q ss_pred cCCcccccc
Q 000215 1494 ICPYCQYFE 1502 (1849)
Q Consensus 1494 ~Cp~C~~~~ 1502 (1849)
+||.|.++-
T Consensus 298 ~C~ec~~k~ 306 (613)
T KOG4299|consen 298 FCPECKIKS 306 (613)
T ss_pred ccCCCeeee
Confidence 999997664
No 54
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=84.27 E-value=1.3 Score=54.55 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=66.6
Q ss_pred Ccccceeeecccc-ccceeEecCCCcceeeeeecCCCeeEEecCCCcHHHHHHHHHhhCCCcccCChhhhhhhccccChh
Q 000215 414 GVMVPWLYLGMLF-SAFCWHFEDHCFYSMNYHHWGDPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPS 492 (1849)
Q Consensus 414 Gv~~P~lyvGm~f-S~f~WH~Ed~~l~SiNy~h~G~~K~WY~VP~~~~~kfe~~~~~~~p~~~~~~pd~l~~~~~~~~P~ 492 (1849)
....-.+|++-.+ ..|.+|.+++...-| -.-+.|.|..-++... +....... +-
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~~-----------~~~~~~~~-----------~~ 166 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPDE-----------PAPLYSDQ-----------PF 166 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCCC-----------TTTSSCE-------------T
T ss_pred cccceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCcc-----------cccccCCC-----------Cc
Confidence 3455678999888 589999999765543 3455999998871110 00000000 11
Q ss_pred hhhhCCCceeecccCCccEEEEcCCccceeeccCccceeecccCCCCchhch
Q 000215 493 VLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 544 (1849)
Q Consensus 493 ~L~~~GIpv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNfa~~~Wl~~g 544 (1849)
...+..-|+..++=+|||.++.-+|.+|.+.+.|.+++-+++|-+++|..+-
T Consensus 167 ~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 167 KQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp TTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred cccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 1122336777899999999999999999999999999999999999998754
No 55
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=83.25 E-value=0.32 Score=40.35 Aligned_cols=34 Identities=38% Similarity=1.009 Sum_probs=19.1
Q ss_pred CceecccccCCccccccCCCCCCCCCCC-CCcccccc
Q 000215 259 EVMLLCDRCNKGWHVYCLSPPLKHVPRG-NWYCLECL 294 (1849)
Q Consensus 259 ~~lLlCD~Cd~~yH~~CL~PPL~~vP~g-dW~C~~C~ 294 (1849)
+.|+.|++|+-..|..|-. +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4589999999999999976 4566666 79998873
No 56
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=78.77 E-value=0.34 Score=41.63 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=29.5
Q ss_pred ccccccCCCCccce-eeccccccccccccCCCccccccccccccCCcc
Q 000215 1452 LCMCCESDSKELEF-LICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1452 ~C~c~~~~~~~~~~-~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
.|.+|..+..+.+. +... |++.||.+|+..-... ...||.|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~-----~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR-----NNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH-----SSB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh-----CCcCCcc
Confidence 48888888865444 5555 9999999999955433 2499998
No 57
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=77.98 E-value=0.92 Score=60.19 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=39.8
Q ss_pred CCCCCCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000215 1445 HGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1500 (1849)
Q Consensus 1445 ~~~~~~~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1500 (1849)
++..++..|-+| . +....+.|+.|..+||..|.++.+....... |+|+=|+.
T Consensus 42 ~~~~~~e~c~ic-~--~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~-~~c~Rc~~ 93 (696)
T KOG0383|consen 42 WDDAEQEACRIC-A--DGGELLWCDTCPASFHASCLGPPLTPQPNGE-FICPRCFC 93 (696)
T ss_pred cchhhhhhhhhh-c--CCCcEEEeccccHHHHHHccCCCCCcCCccc-eeeeeecc
Confidence 445677888888 2 3334577999999999999997766666666 99999943
No 58
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=77.98 E-value=1.5 Score=47.47 Aligned_cols=33 Identities=33% Similarity=0.784 Sum_probs=26.8
Q ss_pred cccccCCCccccccccccccCCcccccccccccc
Q 000215 1475 YHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQ 1508 (1849)
Q Consensus 1475 yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~~~~~~~ 1508 (1849)
||+.|+.|.+..... -.|.||.|....++..+.
T Consensus 2 ~H~~CL~Ppl~~~P~-g~W~Cp~C~~~~~~~~~~ 34 (148)
T cd04718 2 FHLCCLRPPLKEVPE-GDWICPFCEVEKSGQSAM 34 (148)
T ss_pred cccccCCCCCCCCCC-CCcCCCCCcCCCCCCccc
Confidence 999999988877777 579999998877664443
No 59
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=77.60 E-value=1.2 Score=60.26 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=42.9
Q ss_pred hhhhhhcccCCCCCCceecccccCCccccccCCCCCCCCCCCCCccccccc
Q 000215 245 LDQICEQCKSGLHGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 245 ~~~~C~~C~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
.++.|.+|+... .+++|..|++-||.-|..||+..+|..+|-|--|..
T Consensus 343 ~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 343 YDDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred ecccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 467899998774 489999999999999999999999999999998864
No 60
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=77.56 E-value=1 Score=57.92 Aligned_cols=46 Identities=28% Similarity=0.816 Sum_probs=38.2
Q ss_pred hhhcccCC--CCCCceeccc--ccCCccccccCCCCCCCCCCCCCccccccc
Q 000215 248 ICEQCKSG--LHGEVMLLCD--RCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 248 ~C~~C~~~--~~~~~lLlCD--~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
-|-+|... =.+.-++.|| .|.-+-|.-|.. +.+||.|.|||-+|..
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCes 56 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCES 56 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhh
Confidence 48888743 3456789999 788899999987 7899999999999975
No 61
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=77.26 E-value=5.2 Score=49.99 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=43.6
Q ss_pred ccccccCCCCccceeeccccccccccccCCCcccccc---ccccccCCcccccccccc
Q 000215 1452 LCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRN---HAEAYICPYCQYFESESV 1506 (1849)
Q Consensus 1452 ~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~---~~~~~~Cp~C~~~~~~~~ 1506 (1849)
-|++|....+.+..+.|+.|..-||.-|+.|.+.... .-.-|.|+-|-+-++.|.
T Consensus 546 sCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~esSD~ 603 (707)
T KOG0957|consen 546 SCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKNESSDS 603 (707)
T ss_pred eeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccccCcch
Confidence 4999988888888899999999999999997655443 345799999955554443
No 62
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=74.99 E-value=2.6 Score=49.23 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=110.4
Q ss_pred hhhHHHHHhcccccccccchhh----hHHHHHHHhhhhHHHHHHHHhhccccchhHHHHHHHHHhcCccccc---ChhHH
Q 000215 1321 LSDVEEVLAGCKGINFSFPVVI----GELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFD---CPELE 1393 (1849)
Q Consensus 1321 L~~i~~LL~~lq~i~v~~pe~~----~~le~~i~r~~~Wq~r~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~---c~e~~ 1393 (1849)
|+-|+..|+.++.|+-..+++. ..+..+.++ =++|+.++...... -...|+...++ +.+.+
T Consensus 14 LDciLsaLVh~~~Lk~~~~~~~~~e~s~~~~L~~~----Y~qa~~ll~~~q~~--------~~~~~~~~~~~~~~l~~ae 81 (275)
T PF15499_consen 14 LDCILSALVHLESLKNAVTELCSKEESVFWRLFTK----YNQANKLLHTCQLD--------GVKDDDCKKVPSEILAKAE 81 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHH----HHHHHHHHHhhhhc--------CCCCcccccCchHHHHHHH
Confidence 5689999999999988888642 334444433 35566666544411 00011111111 11223
Q ss_pred HHHHHHHhhHHHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCCccceeecccccc
Q 000215 1394 KVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKD 1473 (1849)
Q Consensus 1394 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~c~~~~~~~~~~~~C~~C~d 1473 (1849)
..+++|+. .=.+.+.-.+.-.-++.+|-.-||--+++.-.-.-.++ -+.-.=.-.|+.||.
T Consensus 82 ~~Ln~vR~--~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF-----------------~~sf~WeFeC~~Cg~ 142 (275)
T PF15499_consen 82 TCLNEVRM--EIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLF-----------------LYSFSWEFECSQCGH 142 (275)
T ss_pred HHHHHHHH--HHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHh-----------------heeeEEEEEccccCC
Confidence 33333331 11122222222223567787777776665433322222 111112378999999
Q ss_pred ccccccCCCcccccccccccc---------CCccccccc------------------ccccccCCCCccc--CCCCCchH
Q 000215 1474 CYHLQCLRPTEVDRNHAEAYI---------CPYCQYFES------------------ESVSQFGGSPLRF--GGKRSDLR 1524 (1849)
Q Consensus 1474 ~yH~~Cv~~~~~~~~~~~~~~---------Cp~C~~~~~------------------~~~~~~~~~~~~~--~~~~p~l~ 1524 (1849)
.|.-.|++.++.=+..++.|. |+.|....- +-+-.|....|.| .|.++-++
T Consensus 143 ~~~~R~~K~L~TFtnv~pdwhPLnA~h~~pCn~C~~ksQ~rkMvlekv~~vfmLHFVeGLP~ndl~~ysF~feg~~Y~Vt 222 (275)
T PF15499_consen 143 KYQNRCTKTLVTFTNVIPDWHPLNAVHFGPCNSCNSKSQRRKMVLEKVPPVFMLHFVEGLPHNDLQHYSFHFEGCLYQVT 222 (275)
T ss_pred hhhhhheeeecccCCCCCCCCcccccccCCCcccCChHHhHhhhhhcCchhhhhhhhccCCccCCCccceeecCeeEEEE
Confidence 999999999999999999985 777765421 1233455555544 88888898
Q ss_pred HHHHhhhccchhccCcc
Q 000215 1525 MLIELLSDSEFFCRGIE 1541 (1849)
Q Consensus 1525 ~~~~l~s~~~~~~~~i~ 1541 (1849)
.+|---...+||-.||-
T Consensus 223 ~VIQY~~~~~HFvtWi~ 239 (275)
T PF15499_consen 223 SVIQYQANLNHFVTWIR 239 (275)
T ss_pred EEEEEeccCceeEEEEE
Confidence 88888888888888874
No 63
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=74.92 E-value=2 Score=55.50 Aligned_cols=47 Identities=23% Similarity=0.709 Sum_probs=38.4
Q ss_pred ceEEEec--cCCCCCCceeec--CCCceEEcccccccCCCC-ceecCCCcCC
Q 000215 1708 MLYCICR--KPYDEKAMIACY--QCDEWYHIDCVKLLSAPE-IYICAACKPQ 1754 (1849)
Q Consensus 1708 ~~yC~C~--~~~~~~~mi~Cd--~C~~W~H~~Cvg~~~~~~-~~~C~~C~~~ 1754 (1849)
--+|+|- +.-.+.+.|-|| .|..=.|..|-||.+.|. .|||..|...
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQ 57 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhh
Confidence 3589994 333346799999 899999999999999875 9999999754
No 64
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=73.67 E-value=1.7 Score=51.72 Aligned_cols=33 Identities=30% Similarity=0.706 Sum_probs=25.9
Q ss_pred CCcccccccCCCC-----ccceeeccccccccc-cccCC
Q 000215 1449 SMTLCMCCESDSK-----ELEFLICSACKDCYH-LQCLR 1481 (1849)
Q Consensus 1449 ~~~~C~c~~~~~~-----~~~~~~C~~C~d~yH-~~Cv~ 1481 (1849)
++.+|.|=..+-+ +.+|++|.+|.|||| -.|+-
T Consensus 127 qG~~C~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 127 QGLFCKCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred cceeEEecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 5688999766555 578999999999999 44543
No 65
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=70.37 E-value=1.3 Score=63.37 Aligned_cols=53 Identities=28% Similarity=0.753 Sum_probs=45.3
Q ss_pred CCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccccc
Q 000215 1449 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1502 (1849)
Q Consensus 1449 ~~~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~ 1502 (1849)
...+|-.|....++..|+-|+.|-.|||+-|++|..+..+.. .|.||-|...+
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~-dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPG-DWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcC-CccCCccchhh
Confidence 346799998899999999999999999999999887776655 49999996555
No 66
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=64.80 E-value=3 Score=48.60 Aligned_cols=53 Identities=25% Similarity=0.736 Sum_probs=44.6
Q ss_pred CCCCCCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcc
Q 000215 1445 HGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1445 ~~~~~~~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
++|-+=+.|.+|.---+|.+.+-|+.|..-|||-|+-|..+... .-.|-|--|
T Consensus 276 wqcieck~csicgtsenddqllfcddcdrgyhmyclsppm~epp-egswsc~KO 328 (336)
T KOG1244|consen 276 WQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPP-EGSWSCHLC 328 (336)
T ss_pred eeeeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCC-CCchhHHHH
Confidence 56788889999999999999999999999999999996654443 447888888
No 67
>PHA03247 large tegument protein UL36; Provisional
Probab=62.07 E-value=9.6e+02 Score=37.66 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=55.5
Q ss_pred hhhhhhhhhhhhhhhcccCCCCCCCccccHHHHHhhhcCCCCCCCCCchHHHHHHHHH----HHHHHHHHHHHHhccCCH
Q 000215 777 RRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEE----ARSLIQEINAALSACSKI 852 (1849)
Q Consensus 777 e~W~e~~~~c~s~~qq~~~~k~~~~~kl~leeL~~Ll~~~~Lpc~~pe~~~Lke~l~~----ve~~~~~a~~aL~~~~~~ 852 (1849)
+.|...+..|+.+++.. -..+..|| .-|++++.. ...|..+|+.+|.. +.
T Consensus 1318 erW~~dv~AaL~r~Etr--------seFDa~EL----------------~RLrd~Aa~~gYd~~~f~krAeqalaA--~a 1371 (3151)
T PHA03247 1318 ERWAADVEAALDRVENR--------AEFDAVEL----------------RRLQALAATHGYNPRDFRKRAEQALAA--NA 1371 (3151)
T ss_pred HHHHHHHHHHHHHHhhh--------hhccHHHH----------------HHHHHHHHhcCCChHHHHHHHHHHHHH--hH
Confidence 45777777777777641 12334444 444444432 46888999998875 33
Q ss_pred HHHHHHHHhhcCCCcccccchHHH-----HHHHhhhHHHHHHHHH
Q 000215 853 SELELLYSRASGLPICIVESEKLS-----QRISSAKVWRDSVRKC 892 (1849)
Q Consensus 853 ~eLe~Ll~~g~~~~V~lpEl~~L~-----~rle~ak~Wl~kvr~~ 892 (1849)
.....-|+....||=|-||=.... ..|... +|.+..--+
T Consensus 1372 ~~~~~ALe~v~~FNPYtpeN~~~~~~PPla~L~~i-tW~daF~~A 1415 (3151)
T PHA03247 1372 KTATLALEAAFAFNPYTPENQRHPMLPPLAAIHRI-DWGPAFGAA 1415 (3151)
T ss_pred HHHHHHHHHHHhcCCCCccccCCCCCCcHHHHhcC-chHhhhhhh
Confidence 456667788888999988755422 234455 598877543
No 68
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=61.27 E-value=5.7 Score=50.01 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=34.2
Q ss_pred eEEEeccCCCC---CCceeecCCCceEEcccc--------cccCC-----CC-ceecCCCcCCCC
Q 000215 1709 LYCICRKPYDE---KAMIACYQCDEWYHIDCV--------KLLSA-----PE-IYICAACKPQAE 1756 (1849)
Q Consensus 1709 ~yC~C~~~~~~---~~mi~Cd~C~~W~H~~Cv--------g~~~~-----~~-~~~C~~C~~~~~ 1756 (1849)
..|+|.+-++. --+|.||.|+-|-|.+|. |.+.. .+ .|+|..|-...+
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 45689864332 249999999999999994 32221 13 899999988744
No 69
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=59.10 E-value=3.5 Score=39.40 Aligned_cols=49 Identities=27% Similarity=0.595 Sum_probs=20.1
Q ss_pred ccccccCCCC-c--cceeecc--ccccccccccCCCcccc---cccccc---ccCCcccc
Q 000215 1452 LCMCCESDSK-E--LEFLICS--ACKDCYHLQCLRPTEVD---RNHAEA---YICPYCQY 1500 (1849)
Q Consensus 1452 ~C~c~~~~~~-~--~~~~~C~--~C~d~yH~~Cv~~~~~~---~~~~~~---~~Cp~C~~ 1500 (1849)
.|.+|+.+.. + ..-+.|. .|+.-||..|+.--... .+...+ ..||+|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 4888887654 2 2348998 99999999999832222 222233 46999954
No 70
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.97 E-value=2.2 Score=56.54 Aligned_cols=90 Identities=21% Similarity=0.420 Sum_probs=66.1
Q ss_pred HHHHhhH----HHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCC--cc--ceeec
Q 000215 1397 SKVDKVE----NWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSK--EL--EFLIC 1468 (1849)
Q Consensus 1397 ~~~~~~~----~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~c~~~~~~--~~--~~~~C 1468 (1849)
+.|+.|. +|+.-.+.++-.....+.|.+.+|+--+++++--.. --..|++|.+-.. ++ +.-+|
T Consensus 1421 eGi~rVg~sE~~wkswI~~~q~~~~~~ngs~~D~l~l~kkNi~~~fs---------G~eECaICYsvL~~vdr~lPskrC 1491 (1525)
T COG5219 1421 EGIKRVGTSEIGWKSWINLRQNEMIKKNGSFMDLLGLWKKNIDEKFS---------GHEECAICYSVLDMVDRSLPSKRC 1491 (1525)
T ss_pred ccceeccccHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhcC---------CcchhhHHHHHHHHHhccCCcccc
Confidence 3444444 899999999888888889999999998887764431 1245999965333 33 34799
Q ss_pred cccccccccccCCCccccccccccccCCcc
Q 000215 1469 SACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1469 ~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
.+|+.-||++|+= +=.+..-.=.||-|
T Consensus 1492 ~TCknKFH~~CLy---KWf~Ss~~s~CPlC 1518 (1525)
T COG5219 1492 ATCKNKFHTRCLY---KWFASSARSNCPLC 1518 (1525)
T ss_pred chhhhhhhHHHHH---HHHHhcCCCCCCcc
Confidence 9999999999986 33444555679999
No 71
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=56.37 E-value=4.1 Score=52.96 Aligned_cols=62 Identities=29% Similarity=0.619 Sum_probs=43.1
Q ss_pred ccccccCCCC--ccceeeccccccccccccCCCccccccccccccCCcccccccccccccCCCCccc
Q 000215 1452 LCMCCESDSK--ELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRF 1516 (1849)
Q Consensus 1452 ~C~c~~~~~~--~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~~~~~~ 1516 (1849)
.|..|..-.. ...|+.|+.|+..||..||.....++.-..-|-||.|...++= ..++..++|
T Consensus 20 mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c---~~~gD~~kf 83 (694)
T KOG4443|consen 20 MCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEAC---GTTGDPKKF 83 (694)
T ss_pred hhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeec---cccCCcccc
Confidence 3445543332 3448999999999999999966666655666999999888754 244444444
No 72
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=54.89 E-value=9.3 Score=46.48 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCCcccccccCCC--Ccc--------ceeeccccccccccccCCCccccccccccccCCcccc
Q 000215 1448 VSMTLCMCCESDS--KEL--------EFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1500 (1849)
Q Consensus 1448 ~~~~~C~c~~~~~--~~~--------~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1500 (1849)
++.+.|++|-+.. .++ ...-=--||+++|..|++.-.. +.=.||-|..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-----RqQTCPICr~ 342 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-----RQQTCPICRR 342 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-----hccCCCcccC
Confidence 5567899885431 010 0012236999999999994433 3346999943
No 73
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.00 E-value=15 Score=45.42 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=39.2
Q ss_pred cccccccCCCCccceeeccccccccccccCCCccccccccccccCCccccc
Q 000215 1451 TLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYF 1501 (1849)
Q Consensus 1451 ~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~ 1501 (1849)
..|++|..++..++-++==-|++-||..||.+=+...+ =+||-|..-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r----~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR----TFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC----ccCCCCCCc
Confidence 58999999999999988899999999999996544432 269999763
No 74
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=49.95 E-value=12 Score=42.31 Aligned_cols=53 Identities=26% Similarity=0.555 Sum_probs=36.0
Q ss_pred ceeecCCCceEEcccccccCCC-CceecCCCcCCCCCCCCCCcCCCCCCCCCCCCCCCCCCC
Q 000215 1722 MIACYQCDEWYHIDCVKLLSAP-EIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPK 1782 (1849)
Q Consensus 1722 mi~Cd~C~~W~H~~Cvg~~~~~-~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 1782 (1849)
-+-|..|.- |..|+...+.+ +.|+||.|...++.. +++-.+-..+.|..|++.
T Consensus 192 alIC~~C~h--hngl~~~~ek~~~efiC~~Cn~~n~~~------~~~~dsn~~~~p~~~s~~ 245 (251)
T COG5415 192 ALICPQCHH--HNGLYRLAEKPIIEFICPHCNHKNDEV------KEREDSNEAKQPAQPSQS 245 (251)
T ss_pred hhccccccc--cccccccccccchheecccchhhcCcc------cccccchhhcCCCCcccc
Confidence 567888863 88999999876 579999999988732 222333344555555544
No 75
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=47.55 E-value=9 Score=42.31 Aligned_cols=48 Identities=23% Similarity=0.738 Sum_probs=33.9
Q ss_pred hhhccc---CCCCCCceecccccCCccccccCCCCC------CCCCCCCC--ccccccc
Q 000215 248 ICEQCK---SGLHGEVMLLCDRCNKGWHVYCLSPPL------KHVPRGNW--YCLECLN 295 (1849)
Q Consensus 248 ~C~~C~---~~~~~~~lLlCD~Cd~~yH~~CL~PPL------~~vP~gdW--~C~~C~~ 295 (1849)
+|.+|+ .+..-..|+.|.+|-.+||-.||.|-- +.|-.++. -|-.|+.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 378885 333446799999999999999998762 34544444 3777764
No 76
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=45.25 E-value=8.1 Score=37.22 Aligned_cols=41 Identities=22% Similarity=0.686 Sum_probs=26.2
Q ss_pred cccccCCCCcc----------ceeeccccccccccccCCCccccccccccccCCcc
Q 000215 1453 CMCCESDSKEL----------EFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1453 C~c~~~~~~~~----------~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
|++|..+..+. -.+.=..|++.||..|+.--+.... .||.|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~C 72 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-----TCPLC 72 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-----B-TTS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-----cCCCC
Confidence 99888777322 2233345999999999984432222 89998
No 77
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=43.96 E-value=16 Score=41.46 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=24.1
Q ss_pred CccceeeccccccccccccCCCccccccccccccCCcccccc
Q 000215 1461 KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1502 (1849)
Q Consensus 1461 ~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~~~ 1502 (1849)
+....+.|..|-+ |..|+.+. .++.. .|+||+|+..-
T Consensus 188 ~~~~alIC~~C~h--hngl~~~~-ek~~~--efiC~~Cn~~n 224 (251)
T COG5415 188 SPFKALICPQCHH--HNGLYRLA-EKPII--EFICPHCNHKN 224 (251)
T ss_pred Cchhhhccccccc--cccccccc-cccch--heecccchhhc
Confidence 3444466666653 77888833 33333 89999998875
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=43.24 E-value=6.9e+02 Score=33.85 Aligned_cols=131 Identities=14% Similarity=0.245 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHH------HHHHHHhhcCCCHHHHHHHHHHhCCCccccchHHHHHHHHH
Q 000215 905 VLYKLESEALDLKIDVPETDMLLKMIGQAESCR------ARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHS 978 (1849)
Q Consensus 905 ~Lr~Ll~EA~~l~v~~Pe~~~Lqell~~aE~we------~kA~~lL~~~~sl~eLe~ll~e~~~iPv~lpel~~Lk~~L~ 978 (1849)
+.|-|++.|.++ +|..-.|=-.++.-|+.+ -+|++.|-..+.+=-.-+.+++.++ +.+.|..++.
T Consensus 394 darilL~rAvec---cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ng------n~~mv~kii~ 464 (913)
T KOG0495|consen 394 DARILLERAVEC---CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANG------NVDMVEKIID 464 (913)
T ss_pred HHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcC------CHHHHHHHHH
Confidence 478888888887 576644444444444443 3444444444555556667777777 3444444444
Q ss_pred HH-------------HHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhcccCccCCCChhhHHHHHHHhhhHHHHHhhhc
Q 000215 979 DA-------------IFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACD 1045 (1849)
Q Consensus 979 ka-------------~eW~~~a~~ll~~~~~~~d~~p~l~eL~~Ll~~g~~L~V~L~el~~LE~~L~~a~W~e~a~k~f~ 1045 (1849)
++ ..|++++++.- ...++-.++.+|...-.+.|+-+. +...|++.+. .|.
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e--------~agsv~TcQAIi~avigigvEeed--------~~~tw~~da~-~~~ 527 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACE--------DAGSVITCQAIIRAVIGIGVEEED--------RKSTWLDDAQ-SCE 527 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHh--------hcCChhhHHHHHHHHHhhccccch--------hHhHHhhhHH-HHH
Confidence 43 34887776652 225566777777777666654332 3334776664 455
Q ss_pred CCCCHHHHHHHHHhhh
Q 000215 1046 TKMPLDFIRQVTAEAV 1061 (1849)
Q Consensus 1046 kk~sL~~L~~lL~~g~ 1061 (1849)
+.+..+.-+.+...+.
T Consensus 528 k~~~~~carAVya~al 543 (913)
T KOG0495|consen 528 KRPAIECARAVYAHAL 543 (913)
T ss_pred hcchHHHHHHHHHHHH
Confidence 5555555555544443
No 79
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=41.39 E-value=1.1e+03 Score=32.39 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHhh------cCCCccccc-chHHHHHHHh----hhH
Q 000215 824 GHLILQNYAEEARSLIQEINAALSAC--------SKISELELLYSRA------SGLPICIVE-SEKLSQRISS----AKV 884 (1849)
Q Consensus 824 e~~~Lke~l~~ve~~~~~a~~aL~~~--------~~~~eLe~Ll~~g------~~~~V~lpE-l~~L~~rle~----ak~ 884 (1849)
.+..+..-++++..|..++..+|..+ +.+..++.|++.. .+...|+-. +..|...+.+ .|.
T Consensus 30 ~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~ 109 (683)
T PF08580_consen 30 AVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKK 109 (683)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 34455556777888999999988775 2356777787774 233333332 4444443333 333
Q ss_pred HHHHHHHHhhccCCCcccHHHHHHHHHHHhhcCCCCCch--HHHHHHHHHHHHHHHHHHHHhh--------cCCCHHHHH
Q 000215 885 WRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET--DMLLKMIGQAESCRARCSEALR--------GSMSLKTVE 954 (1849)
Q Consensus 885 Wl~kvr~~L~~~~~~~~tLd~Lr~Ll~EA~~l~v~~Pe~--~~Lqell~~aE~we~kA~~lL~--------~~~sl~eLe 954 (1849)
|+..+++ .+ ++.+.+-|+ +.|..+..++|.|...+.++=+ ..++.-+|+
T Consensus 110 ~L~~vK~-----------------qv----eiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le 168 (683)
T PF08580_consen 110 TLISVKK-----------------QV----EIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELE 168 (683)
T ss_pred HHHHHHH-----------------HH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHH
Confidence 4444443 33 122222232 2444555666666555544432 126788999
Q ss_pred HHHHHh
Q 000215 955 LLLQEL 960 (1849)
Q Consensus 955 ~ll~e~ 960 (1849)
.+++++
T Consensus 169 ~Ive~~ 174 (683)
T PF08580_consen 169 TIVEEM 174 (683)
T ss_pred HHHHhc
Confidence 999998
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=41.01 E-value=7.4 Score=32.33 Aligned_cols=41 Identities=20% Similarity=0.516 Sum_probs=27.3
Q ss_pred cccccCCCCccceeeccccccccccccCCCccccccccccccCCccc
Q 000215 1453 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499 (1849)
Q Consensus 1453 C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1499 (1849)
|..|..+. ...+.-..|++.||..|+...... ....||.|.
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~----~~~~Cp~C~ 42 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS----GKNTCPLCR 42 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh----CcCCCCCCC
Confidence 66665555 223444559999999999844332 456799994
No 81
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=40.77 E-value=3e+02 Score=37.76 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=24.8
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000215 963 FTVNMPELELLKQYHSDAIFWIARLNDILVNI 994 (1849)
Q Consensus 963 iPv~lpel~~Lk~~L~ka~eW~~~a~~ll~~~ 994 (1849)
||-..-...++...+.+..+|..++.+++..+
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L 55 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGL 55 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777778888899999999998644
No 82
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=40.28 E-value=19 Score=46.23 Aligned_cols=49 Identities=18% Similarity=0.656 Sum_probs=37.4
Q ss_pred CCceEEEeccCCCCC-CceeecCCCceEEcccccccCCC---------CceecCCCcCC
Q 000215 1706 RSMLYCICRKPYDEK-AMIACYQCDEWYHIDCVKLLSAP---------EIYICAACKPQ 1754 (1849)
Q Consensus 1706 ~~~~yC~C~~~~~~~-~mi~Cd~C~~W~H~~Cvg~~~~~---------~~~~C~~C~~~ 1754 (1849)
....+|+|....+.+ .-++|..|..|||..|.-..+.. ..|+|..|+..
T Consensus 18 ~~~~~~y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~ 76 (544)
T KOG2626|consen 18 KQATVCYCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPS 76 (544)
T ss_pred cCccccccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCc
Confidence 345799998777754 48999999999998665554321 38999999987
No 83
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=39.36 E-value=28 Score=44.35 Aligned_cols=54 Identities=9% Similarity=-0.169 Sum_probs=46.1
Q ss_pred hccCCCceEEEeccCCCCC-CceeecCCCceEEcccccccCCCCceecCCCcCCC
Q 000215 1702 SLRARSMLYCICRKPYDEK-AMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQA 1755 (1849)
Q Consensus 1702 ~~~~~~~~yC~C~~~~~~~-~mi~Cd~C~~W~H~~Cvg~~~~~~~~~C~~C~~~~ 1755 (1849)
....+...||.|++.+++. .|.+|..|+.|+|..|++.+..++.++|..|....
T Consensus 165 ~~~~~~~~~~~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~~~~~~~~~~s~~~ 219 (464)
T KOG1886|consen 165 LRKLRDGDFGDGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNAAASKRSQQKSEIS 219 (464)
T ss_pred ccCccccchhcccccCCccchhhhcccCCCCCCccccccccccccceeccccccc
Confidence 3456667899999999874 59999999999999999999999999999996544
No 84
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=38.84 E-value=16 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.698 Sum_probs=27.1
Q ss_pred hhhhhcccCCCC-CCceecccccCCccccccCC
Q 000215 246 DQICEQCKSGLH-GEVMLLCDRCNKGWHVYCLS 277 (1849)
Q Consensus 246 ~~~C~~C~~~~~-~~~lLlCD~Cd~~yH~~CL~ 277 (1849)
...|..|+..-. ++.++.|..|...||-.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 457999998763 78899999999999999954
No 85
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.64 E-value=1.3e+02 Score=37.23 Aligned_cols=38 Identities=26% Similarity=0.787 Sum_probs=29.9
Q ss_pred CCcccccccCCC----------CccceeeccccccccccccCCCccccccccccccCCccc
Q 000215 1449 SMTLCMCCESDS----------KELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499 (1849)
Q Consensus 1449 ~~~~C~c~~~~~----------~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1499 (1849)
..+.|-+|.+.- ++...++|+.|+.-+|..=++ ||+|.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~-------------C~~Cg 233 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVK-------------CSNCE 233 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCcc-------------CCCCC
Confidence 468999997662 345779999999999987443 99995
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=38.08 E-value=17 Score=33.04 Aligned_cols=32 Identities=25% Similarity=0.637 Sum_probs=27.2
Q ss_pred CcccccccCCCC-ccceeeccccccccccccCC
Q 000215 1450 MTLCMCCESDSK-ELEFLICSACKDCYHLQCLR 1481 (1849)
Q Consensus 1450 ~~~C~c~~~~~~-~~~~~~C~~C~d~yH~~Cv~ 1481 (1849)
...|..|..... ...-+.|..|+.=||-+|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 467999988885 45669999999999999985
No 87
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=36.72 E-value=94 Score=36.79 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=69.8
Q ss_pred cchhhhhHHhhhcccCCcccCCCCChhhHHHHHhccc------ccccccchhhhHHHHHHHhhhhHHHHHHHHhhccccc
Q 000215 1296 LIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCK------GINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQ 1369 (1849)
Q Consensus 1296 ~~~~~~wl~~~~~~lp~~~rs~rp~L~~i~~LL~~lq------~i~v~~pe~~~~le~~i~r~~~Wq~r~~~~~~~~~~~ 1369 (1849)
...+..|-+.+..+|+.-. .++|+|..++....+|| ++.+..||. -.++. +.-..||.+.++.....++.
T Consensus 20 tass~p~~~~~gvll~R~P-vv~~~~se~EK~~~~ll~e~e~e~sl~~dhel-~~~qe--~~~~~~q~~~~~e~~~eDe~ 95 (263)
T KOG4548|consen 20 TASSQPWKIFAGVLLSRLP-VVAPPLSELEKRFYSLLMELEQEKSLKPDHEL-KAFQE--EKEKAWQAQLRKEVDEEDEF 95 (263)
T ss_pred ccCCCchhhhHHhhhhhcc-cccCCCCHHHHHHHHHHHHHHHHhccCCcHHH-HHHHH--HHHHHHHHHHHHhhcccchh
Confidence 3445567787777776544 34556655554444432 588888887 66666 34479999988777666632
Q ss_pred hhHHHHHHHHHhcCcccccChhHHHHHHHHHhhHHHHHHhhhhcccccCCCCchHHHHHHHHhhhccceeee
Q 000215 1370 QSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIY 1441 (1849)
Q Consensus 1370 ~~~~~l~~l~~~g~~~~~~c~e~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~~~ 1441 (1849)
+-+.....| +.|.+...+...+...++..=--.+--..+.||+.+||-
T Consensus 96 -----------------------~~i~~~~~k-d~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLL 143 (263)
T KOG4548|consen 96 -----------------------IGITANDRK-DMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLL 143 (263)
T ss_pred -----------------------hHHHHHHHH-HHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEE
Confidence 222222221 689999988766654433111111222345689999944
No 88
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=36.15 E-value=54 Score=28.66 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=27.3
Q ss_pred HHHHHHhhcCChHhhhcccchHHHHhHhcCCCccchhhHHHHHHHHHHhh
Q 000215 134 KLFNAAKRFGGYDKVVKEKKWGEVFRFVRSNRKISDCARHVLCQLYYKHL 183 (1849)
Q Consensus 134 ~L~~~V~~~GG~~~V~~~kkW~~Va~~l~~~~~~~s~~~~~Lk~~Y~kyL 183 (1849)
.|..+|..+|.- .|..|+..++..++ ...++.+|.+||
T Consensus 11 ~l~~~v~~~g~~-------~W~~Ia~~~~~~Rt-----~~qc~~~~~~~~ 48 (48)
T PF00249_consen 11 KLLEAVKKYGKD-------NWKKIAKRMPGGRT-----AKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHSTTT-------HHHHHHHHHSSSST-----HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCc-------HHHHHHHHcCCCCC-----HHHHHHHHHhhC
Confidence 456677776643 69999999983332 347899999875
No 89
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=35.67 E-value=20 Score=30.49 Aligned_cols=26 Identities=38% Similarity=0.935 Sum_probs=22.8
Q ss_pred cccccccccccceecc-cCCCceeeccch
Q 000215 628 CIICRQYLYLSAVACR-CRPAAFVCLEHW 655 (1849)
Q Consensus 628 C~~C~~~~fls~v~c~-~~~~~~~CL~h~ 655 (1849)
|..|+...||..+.|. |. .++|+.|-
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHR 27 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccC
Confidence 7889999999889998 74 78999994
No 90
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=35.66 E-value=26 Score=33.18 Aligned_cols=31 Identities=32% Similarity=0.740 Sum_probs=18.9
Q ss_pred CceeecCCC-ceEEcccccccCC--------CCceecCCC
Q 000215 1721 AMIACYQCD-EWYHIDCVKLLSA--------PEIYICAAC 1751 (1849)
Q Consensus 1721 ~mi~Cd~C~-~W~H~~Cvg~~~~--------~~~~~C~~C 1751 (1849)
.||.|..=+ -|.|..|+.+++. ..+|+|..=
T Consensus 29 AMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH 68 (78)
T PF13341_consen 29 AMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDH 68 (78)
T ss_dssp -EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTT
T ss_pred eEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhh
Confidence 499998544 9999999999873 469999753
No 91
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=35.15 E-value=15 Score=46.06 Aligned_cols=43 Identities=23% Similarity=0.614 Sum_probs=34.6
Q ss_pred EeccCCC--CCCceeecCCCceEEcccccccCCCC-ceecCCCcCC
Q 000215 1712 ICRKPYD--EKAMIACYQCDEWYHIDCVKLLSAPE-IYICAACKPQ 1754 (1849)
Q Consensus 1712 ~C~~~~~--~~~mi~Cd~C~~W~H~~Cvg~~~~~~-~~~C~~C~~~ 1754 (1849)
+|...++ ....|.||+|+-=.|.+|-||.--|+ .|.|..|.-.
T Consensus 198 ~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~ 243 (669)
T COG5141 198 KCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYG 243 (669)
T ss_pred hccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhccc
Confidence 6765555 35799999999999999999997665 8888888643
No 92
>PHA03246 large tegument protein UL36; Provisional
Probab=34.36 E-value=2.2e+03 Score=33.77 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=45.2
Q ss_pred CCCCchHHHHHHHHH----HHHHHHHHHHHHhccCCHHHHHHHHHhhcCCCcccccchHH-----HHHHHhhhHHHHHHH
Q 000215 820 CNEPGHLILQNYAEE----ARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKL-----SQRISSAKVWRDSVR 890 (1849)
Q Consensus 820 c~~pe~~~Lke~l~~----ve~~~~~a~~aL~~~~~~~eLe~Ll~~g~~~~V~lpEl~~L-----~~rle~ak~Wl~kvr 890 (1849)
|+.-|+.-|++++.. ...|..+|+.+|... ......-|+....||=+-||=... -..|.+. .|-+..-
T Consensus 1412 FDa~EL~RLrd~Aa~~GYd~~~frkrAEqalaA~--a~~v~~ALetVl~FNPYspEN~~~~~~PPia~L~~I-tW~DaF~ 1488 (3095)
T PHA03246 1412 FDAMEINSLEETARNAGYDTIRFKSRAEKIVSAH--ARVVENAIETVLKFNPYSTTNIIHGLKPPIAALKNI-TWGDAFF 1488 (3095)
T ss_pred ccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh--HHHHHHHHHHHHccCCCCCcccCCCCCChHHHHhhC-chHhhhh
Confidence 555556666666653 568999999988753 344556677777899888765422 1344555 5988775
Q ss_pred HH
Q 000215 891 KC 892 (1849)
Q Consensus 891 ~~ 892 (1849)
.+
T Consensus 1489 aA 1490 (3095)
T PHA03246 1489 AA 1490 (3095)
T ss_pred hh
Confidence 43
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.35 E-value=61 Score=43.98 Aligned_cols=55 Identities=27% Similarity=0.634 Sum_probs=35.8
Q ss_pred HHHhhhccceeeecCCCCCCCCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000215 1429 KIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1500 (1849)
Q Consensus 1429 ~~~~~~~~~~~~~~~~~~~~~~~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1500 (1849)
+.+++|+.+=-|. +..-|-.|..+ =+.+|++ -.|++-||-.|++ ...-.||.|..
T Consensus 826 ~~l~~lr~sa~i~-------q~skCs~C~~~-LdlP~Vh-F~CgHsyHqhC~e--------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 826 QELETLRTSAQIF-------QVSKCSACEGT-LDLPFVH-FLCGHSYHQHCLE--------DKEDKCPKCLP 880 (933)
T ss_pred HHHHHhhccccee-------eeeeecccCCc-cccceee-eecccHHHHHhhc--------cCcccCCccch
Confidence 4445555555454 33568878332 2334444 5799999999999 45678999933
No 94
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=33.01 E-value=3.5e+02 Score=32.48 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHhhcCCCcc
Q 000215 827 ILQNYAEEARSLIQEINAALSACSK-ISELELLYSRASGLPIC 868 (1849)
Q Consensus 827 ~Lke~l~~ve~~~~~a~~aL~~~~~-~~eLe~Ll~~g~~~~V~ 868 (1849)
.+..+...++.++.++..++.+... ....+..+.++..+...
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777776665432 23455555555544433
No 95
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=32.53 E-value=28 Score=31.09 Aligned_cols=30 Identities=17% Similarity=0.555 Sum_probs=16.6
Q ss_pred CceeecCCCceEEcccccccC----CCCceecCCC
Q 000215 1721 AMIACYQCDEWYHIDCVKLLS----APEIYICAAC 1751 (1849)
Q Consensus 1721 ~mi~Cd~C~~W~H~~Cvg~~~----~~~~~~C~~C 1751 (1849)
..||||.|.+|=... .++.. .++.|+|..=
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 479999999998875 44433 3569999763
No 96
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=30.98 E-value=25 Score=46.10 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=41.3
Q ss_pred CCcccccccCCCCccceeeccccccccccccCCCccccccccccccCCcccc
Q 000215 1449 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1500 (1849)
Q Consensus 1449 ~~~~C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1500 (1849)
+...|+|-..+..+..|+.|+.|+-|=|..|++...... ...|.|.-|..
T Consensus 85 ~~~~c~c~~~~~~~g~~i~c~~c~~Wqh~~C~g~~~~~~--p~~y~c~~c~~ 134 (508)
T KOG1844|consen 85 EISRCDCGLEDDMEGLMIQCDWCGRWQHKICCGSFKSTK--PDKYVCEICTP 134 (508)
T ss_pred cccccccccccCCCceeeCCcccCcccCceeeeecCCCC--chhceeeeecc
Confidence 346799987777688999999999999999999554443 79999999944
No 97
>PHA02929 N1R/p28-like protein; Provisional
Probab=29.88 E-value=21 Score=42.13 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=31.0
Q ss_pred CCCcccccccCCCCccc-----eeeccccccccccccCCCccccccccccccCCccc
Q 000215 1448 VSMTLCMCCESDSKELE-----FLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499 (1849)
Q Consensus 1448 ~~~~~C~c~~~~~~~~~-----~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1499 (1849)
.+...|.+|.....+.+ +..=..|++.||..|+..-... .=.||-|-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-----~~tCPlCR 223 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-----KNTCPVCR 223 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-----CCCCCCCC
Confidence 34567999977654322 2233579999999999844322 22799994
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.77 E-value=8e+02 Score=30.17 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCCcccccchHHHHHHHhhhHHHHHHHHHhhccCCC-cccHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000215 853 SELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPA-AIEIDVLYKLESEALDLKIDVPETDMLLKMIG 931 (1849)
Q Consensus 853 ~eLe~Ll~~g~~~~V~lpEl~~L~~rle~ak~Wl~kvr~~L~~~~~~-~~tLd~Lr~Ll~EA~~l~v~~Pe~~~Lqell~ 931 (1849)
.++..+.+..+.++..-+.+..|+..+++. .|.......-....+. .-.+..|+..+..+... .-....++++..
T Consensus 90 ~~~~~l~e~~~~~~~~~~~~~~ler~i~~L-e~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~---~e~~~~~~el~a 165 (294)
T COG1340 90 KEYRELKEKRNEFNLGGRSIKSLEREIERL-EKKQQTSVLTPEEERELVQKIKELRKELEDAKKA---LEENEKLKELKA 165 (294)
T ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHH-HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345556666666666667788888888887 3654443220000000 01234444444443322 233456677777
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHhCCCccccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 000215 932 QAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMP-ELELLKQYHSDAIFWIARLNDIL 991 (1849)
Q Consensus 932 ~aE~we~kA~~lL~~~~sl~eLe~ll~e~~~iPv~lp-el~~Lk~~L~ka~eW~~~a~~ll 991 (1849)
.+..-..+|..+- ..+..++++++.+.=.|- .....+++-.+|...+..+-.+.
T Consensus 166 ei~~lk~~~~e~~------eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~ 220 (294)
T COG1340 166 EIDELKKKAREIH------EKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELS 220 (294)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776663 456666677665554442 22334444455555555554443
No 99
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=28.97 E-value=35 Score=39.44 Aligned_cols=41 Identities=27% Similarity=0.656 Sum_probs=31.8
Q ss_pred hhhhhcccCCC-----CCCceecccccCCccccccCCCCCCCCCCCCCccccccc
Q 000215 246 DQICEQCKSGL-----HGEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLN 295 (1849)
Q Consensus 246 ~~~C~~C~~~~-----~~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~ 295 (1849)
+.+|++|++++ +.+....|+.|..-||..|... =.||+|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 56899998764 2346788999999999999872 12999964
No 100
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=28.57 E-value=2.7e+02 Score=31.79 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-------C---CCHHHHHHHHHHhCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 000215 928 KMIGQAESCRARCSEALRG-------S---MSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGR 997 (1849)
Q Consensus 928 ell~~aE~we~kA~~lL~~-------~---~sl~eLe~ll~e~~~iPv~lpel~~Lk~~L~ka~eW~~~a~~ll~~~~~~ 997 (1849)
++++.+..|-.....+++. + -.+.+--++++.+.. -+++.+++.+.+-.+.|.++++++.++|+..-.+
T Consensus 70 ~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~-~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~ 148 (209)
T KOG2910|consen 70 ELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQ-EFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA 148 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 4778888887776666653 0 122222233443322 2345568888888889999999999999644333
Q ss_pred CCCCCCHHHHHHHHHh
Q 000215 998 KDQHNVIDELNCILKE 1013 (1849)
Q Consensus 998 ~d~~p~l~eL~~Ll~~ 1013 (1849)
.+..-.+.+|..|...
T Consensus 149 ~dEddi~~EldaLese 164 (209)
T KOG2910|consen 149 EDEDDILAELDALESE 164 (209)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3333344555555443
No 101
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.97 E-value=46 Score=37.06 Aligned_cols=108 Identities=18% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCceeecCCCceEEcccccccCC---------CCcee--cCCCcCCCCCCCCCCcCCCC---C-CCCCCCCCCCCCCC--
Q 000215 1720 KAMIACYQCDEWYHIDCVKLLSA---------PEIYI--CAACKPQAEESSTPQNVDGG---R-TNAEFLEPKTPSPK-- 1782 (1849)
Q Consensus 1720 ~~mi~Cd~C~~W~H~~Cvg~~~~---------~~~~~--C~~C~~~~~~~~~~~~~~~~---~-~~~~~~~p~~~~~~-- 1782 (1849)
+.||-|..|..=||-.|+|.... .+.|+ |-.|..........+..... . ..+....|-.+.+.
T Consensus 15 G~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~G~~c~pfr~r~T~k 94 (175)
T PF15446_consen 15 GPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKPGPSCKPFRPRKTPK 94 (175)
T ss_pred CCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCCCCCCcccCCCCCcH
Confidence 78999999999999999999753 24555 88887543311111111111 1 11122222211111
Q ss_pred -CChhhhhccccCCchhhhhHHHhcC--CCcccccCCcccccccccCch
Q 000215 1783 -HTNSRKKLRKAEPGLAQKMLAIANN--SSVFDCSSGIDNLWWHNRKPF 1828 (1849)
Q Consensus 1783 -~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~ 1828 (1849)
...-|..|.. +-|+....+.-+|+ +=++||.+.-...++.-.-|.
T Consensus 95 QEe~~ReeNgG-~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 95 QEEKLREENGG-VDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred HHHHHHHHcCC-CCCCccCCHHHccChhheEEecCCccceeehhhCCCC
Confidence 1112222332 33444444556777 334899988777555544443
No 102
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=26.98 E-value=37 Score=39.23 Aligned_cols=69 Identities=26% Similarity=0.524 Sum_probs=41.5
Q ss_pred CchHHHHHHHHhhhccceeeecCCCCCCCC-cccccccC-----CCCccceeeccccccccccccCCCcccccccccccc
Q 000215 1421 NSLLGLLQKIKQSVHRSLYIYNKPHGSVSM-TLCMCCES-----DSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYI 1494 (1849)
Q Consensus 1421 ~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~C~c~~~-----~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~ 1494 (1849)
++|...|+++.+....=+ ++ =.-|..+ -.|-.|.. +......++|..|+..||-.|..- + .
T Consensus 125 G~L~~~L~~l~~~~~~HV--~~-C~lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---~-------~ 191 (202)
T PF13901_consen 125 GQLLPQLEKLVQFAEKHV--YS-CELCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---K-------S 191 (202)
T ss_pred chHHHHHHHHHHHHHHHH--HH-hHHHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---C-------C
Confidence 455555555544333322 21 0113333 66887854 233446689999999999999992 1 1
Q ss_pred CCcccccc
Q 000215 1495 CPYCQYFE 1502 (1849)
Q Consensus 1495 Cp~C~~~~ 1502 (1849)
||-|.-.+
T Consensus 192 CpkC~R~~ 199 (202)
T PF13901_consen 192 CPKCARRQ 199 (202)
T ss_pred CCCcHhHh
Confidence 99996543
No 103
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.89 E-value=20 Score=47.20 Aligned_cols=16 Identities=44% Similarity=1.030 Sum_probs=10.0
Q ss_pred eeccccccccccccCC
Q 000215 1466 LICSACKDCYHLQCLR 1481 (1849)
Q Consensus 1466 ~~C~~C~d~yH~~Cv~ 1481 (1849)
.+|+.|+.+||-.|.+
T Consensus 532 ~rC~~C~avfH~~C~~ 547 (580)
T KOG1829|consen 532 RRCSTCLAVFHKKCLR 547 (580)
T ss_pred eeHHHHHHHHHHHHHh
Confidence 4566666666666665
No 104
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.99 E-value=40 Score=27.52 Aligned_cols=23 Identities=26% Similarity=0.839 Sum_probs=18.1
Q ss_pred eccccccccccccCCCccccccccccccCCcccc
Q 000215 1467 ICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQY 1500 (1849)
Q Consensus 1467 ~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~~ 1500 (1849)
.|..|+.-|...- ..|.||-|..
T Consensus 3 ~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 3 VCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred ECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 5888998886543 7899999944
No 105
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=24.88 E-value=29 Score=34.55 Aligned_cols=44 Identities=18% Similarity=0.566 Sum_probs=25.9
Q ss_pred cccccCCCCccceeeccccccccccccCCCccccccccccccCCccc
Q 000215 1453 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1499 (1849)
Q Consensus 1453 C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C~ 1499 (1849)
|--|..+.++-..+-+ .|++.||+-|+.-=.+. +... =.||.|-
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~-~~~~-~~CPmCR 78 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLST-QSSK-GQCPMCR 78 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHcc-ccCC-CCCCCcC
Confidence 3334444444344444 49999999998833332 2233 3999993
No 106
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=24.87 E-value=58 Score=34.09 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred CCCchHHHHHHHHhhhccceeeecCCCCCCCCcccccccCCCCccceeeccccc
Q 000215 1419 DKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACK 1472 (1849)
Q Consensus 1419 ~~~sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~c~~~~~~~~~~~~C~~C~ 1472 (1849)
.+-+++.+|++|+..+|.++.-. ..|- .+.|+-|.--+++...++|.+=-
T Consensus 27 ~~~tVLd~L~~Ik~~~D~sLafr---~sCr-~giCGsCam~ING~~~LAC~t~v 76 (110)
T PF13085_consen 27 PGMTVLDALNYIKEEQDPSLAFR---YSCR-SGICGSCAMRINGRPRLACKTQV 76 (110)
T ss_dssp STSBHHHHHHHHHHHT-TT--B-----SSS-SSSSSTTEEEETTEEEEGGGSBG
T ss_pred CCCcHHHHHHHHHhccCCCeEEE---ecCC-CCCCCCCEEEECCceecceeeEc
Confidence 56899999999999999999855 2344 48999999999999999997533
No 107
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.93 E-value=26 Score=27.79 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=0.0
Q ss_pred eccCCCCCCceeecCCCceEEcccc
Q 000215 1713 CRKPYDEKAMIACYQCDEWYHIDCV 1737 (1849)
Q Consensus 1713 C~~~~~~~~mi~Cd~C~~W~H~~Cv 1737 (1849)
|+.+.+++.+-.|..|+-.+|..|+
T Consensus 6 C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 6 CGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp TS----S--EEE-TTT-----HHHH
T ss_pred CCCcCCCCceEECccCCCccChhcC
No 108
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=22.74 E-value=23 Score=29.58 Aligned_cols=39 Identities=18% Similarity=0.619 Sum_probs=25.7
Q ss_pred cccccCCCCccceeeccccccccccccCCCccccccccccccCCcc
Q 000215 1453 CMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1453 C~c~~~~~~~~~~~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
|.+|.....+ .+....||+.|..+|+....++ ...||.|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-----TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-----cCCCcCC
Confidence 5566444444 4578899999999999844333 2688887
No 109
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=22.25 E-value=32 Score=35.45 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=0.0
Q ss_pred EEeccCCCCCCceeecC--CCceEEccc
Q 000215 1711 CICRKPYDEKAMIACYQ--CDEWYHIDC 1736 (1849)
Q Consensus 1711 C~C~~~~~~~~mi~Cd~--C~~W~H~~C 1736 (1849)
++|++. .|..|.|.. |..+||..|
T Consensus 59 ~iC~~~--~G~~i~C~~~~C~~~fH~~C 84 (110)
T PF13832_consen 59 SICGKS--GGACIKCSHPGCSTAFHPTC 84 (110)
T ss_pred cCCCCC--CceeEEcCCCCCCcCCCHHH
No 110
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=21.75 E-value=9 Score=36.66 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=18.7
Q ss_pred hhhcccCCCC-C--Cceeccc--ccCCccccccCCCCCCCCCC-------CCCccccccc
Q 000215 248 ICEQCKSGLH-G--EVMLLCD--RCNKGWHVYCLSPPLKHVPR-------GNWYCLECLN 295 (1849)
Q Consensus 248 ~C~~C~~~~~-~--~~lLlCD--~Cd~~yH~~CL~PPL~~vP~-------gdW~C~~C~~ 295 (1849)
.|.+|-.... . ...+.|+ .|.+.||+.||.-=+.+.++ -.+.||.|..
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~ 63 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSS 63 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-S
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCC
Confidence 4778876532 2 2347798 99999999998743322222 2345888753
No 111
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=21.18 E-value=24 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=19.6
Q ss_pred eeccccccccccccCCCccccccccccccCCcc
Q 000215 1466 LICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1498 (1849)
Q Consensus 1466 ~~C~~C~d~yH~~Cv~~~~~~~~~~~~~~Cp~C 1498 (1849)
..-..|++.||..|+..... .....||.|
T Consensus 11 ~~~~~C~H~~c~~C~~~~~~----~~~~~CP~C 39 (39)
T smart00184 11 PVVLPCGHTFCRSCIRKWLK----SGNNTCPIC 39 (39)
T ss_pred cEEecCCChHHHHHHHHHHH----hCcCCCCCC
Confidence 33346999999999984433 234568876
No 112
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.53 E-value=40 Score=41.01 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=22.5
Q ss_pred hhhhhcccCC--------CC--CCceecccccCCccccccCCCCCCCCCCCCCcccccccCCCCCCCc
Q 000215 246 DQICEQCKSG--------LH--GEVMLLCDRCNKGWHVYCLSPPLKHVPRGNWYCLECLNSDKDSFGF 303 (1849)
Q Consensus 246 ~~~C~~C~~~--------~~--~~~lLlCD~Cd~~yH~~CL~PPL~~vP~gdW~C~~C~~~~~~~fGF 303 (1849)
...|.+||+. .. |.+.+.|..|+..||..=. .||.|-+.+...+.+
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~------------~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRI------------KCPYCGNTDHEKLEY 227 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TT------------S-TTT---SS-EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCC------------CCcCCCCCCCcceee
Confidence 3579999985 22 5699999999999998743 499998877655443
No 113
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.14 E-value=60 Score=36.26 Aligned_cols=40 Identities=30% Similarity=0.579 Sum_probs=32.0
Q ss_pred CceeecccCCccEEEEcCCccceeeccCccceeeccc-------CCCCchhc
Q 000215 499 VPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNF-------APADWLPH 543 (1849)
Q Consensus 499 Ipv~~~~Q~pGefVitfP~ayH~g~n~G~n~~eavNf-------a~~~Wl~~ 543 (1849)
=++|.+.-.+|++|.+-||+||| |.+.++-|| .++-|.+.
T Consensus 115 ~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 115 GKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred CcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 46788888889999999999999 666666666 47778764
Done!