Query 000216
Match_columns 1849
No_of_seqs 151 out of 168
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 01:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 8.1E-06 2.8E-10 88.4 41.4 37 240-276 2-38 (284)
2 1i84_S Smooth muscle myosin he 98.6 4E-07 1.4E-11 121.9 16.2 8 42-49 535-542 (1184)
3 1i84_S Smooth muscle myosin he 98.4 2.7E-07 9.1E-12 123.6 9.8 24 558-581 1143-1166(1184)
4 2v71_A Nuclear distribution pr 96.8 0.097 3.3E-06 57.5 20.8 163 426-640 17-179 (189)
5 2v71_A Nuclear distribution pr 96.2 0.32 1.1E-05 53.5 20.2 91 403-493 47-141 (189)
6 3o0z_A RHO-associated protein 95.8 1.3 4.6E-05 47.8 22.1 132 263-425 4-138 (168)
7 3vkg_A Dynein heavy chain, cyt 95.7 1.4 4.9E-05 64.8 28.8 57 246-302 1908-1964(3245)
8 3na7_A HP0958; flagellar bioge 95.5 1.6 5.3E-05 49.6 23.0 40 448-487 91-130 (256)
9 3o0z_A RHO-associated protein 95.0 2.9 9.8E-05 45.3 21.4 69 389-457 46-114 (168)
10 2fxo_A Myosin heavy chain, car 94.5 0.7 2.4E-05 47.8 15.1 112 701-819 12-123 (129)
11 3vkg_A Dynein heavy chain, cyt 94.5 4.5 0.00015 59.9 28.1 16 1476-1491 3080-3095(3245)
12 2dfs_A Myosin-5A; myosin-V, in 94.3 18 0.00061 49.0 31.5 29 33-62 496-531 (1080)
13 3u1c_A Tropomyosin alpha-1 cha 93.7 0.83 2.8E-05 45.5 13.1 94 239-346 4-97 (101)
14 2efr_A General control protein 93.5 9.7 0.00033 40.8 23.2 73 434-506 57-129 (155)
15 3u59_A Tropomyosin beta chain; 93.1 0.98 3.3E-05 44.9 12.5 94 239-346 4-97 (101)
16 2dfs_A Myosin-5A; myosin-V, in 91.9 1.3 4.4E-05 59.7 15.4 61 751-814 984-1044(1080)
17 2efr_A General control protein 91.1 19 0.00064 38.7 22.9 53 377-429 70-122 (155)
18 2fxo_A Myosin heavy chain, car 89.4 19 0.00065 37.2 18.1 54 391-444 20-73 (129)
19 3u1c_A Tropomyosin alpha-1 cha 88.0 14 0.00048 36.8 15.4 92 352-457 5-96 (101)
20 3u59_A Tropomyosin beta chain; 87.7 15 0.00051 36.5 15.4 92 352-457 5-96 (101)
21 3oja_B Anopheles plasmodium-re 87.1 8.1 0.00028 47.8 16.3 44 424-467 535-578 (597)
22 3ol1_A Vimentin; structural ge 87.1 6.1 0.00021 40.4 12.5 81 798-896 32-112 (119)
23 2jee_A YIIU; FTSZ, septum, coi 86.2 6.5 0.00022 38.1 11.3 61 586-646 19-79 (81)
24 2ocy_A RAB guanine nucleotide 85.6 43 0.0015 36.0 20.0 31 424-454 4-34 (154)
25 2ocy_A RAB guanine nucleotide 85.3 21 0.00072 38.3 15.8 89 755-854 10-98 (154)
26 3bas_A Myosin heavy chain, str 83.9 4.9 0.00017 39.2 9.6 73 703-775 15-87 (89)
27 3ol1_A Vimentin; structural ge 83.1 15 0.00051 37.6 13.2 91 722-826 19-109 (119)
28 4gkw_A Spindle assembly abnorm 82.7 50 0.0017 34.5 17.3 146 625-805 14-159 (167)
29 2v66_B Nuclear distribution pr 80.5 46 0.0016 34.0 15.4 96 348-457 2-101 (111)
30 2v66_B Nuclear distribution pr 80.2 32 0.0011 35.2 14.0 51 442-492 37-87 (111)
31 3mq7_A Bone marrow stromal ant 80.1 42 0.0014 34.5 14.7 83 372-457 20-102 (121)
32 3a7p_A Autophagy protein 16; c 79.1 8.5 0.00029 41.1 9.9 77 742-832 59-135 (152)
33 3swk_A Vimentin; cytoskeleton, 78.5 8.1 0.00028 37.6 8.9 75 797-889 11-85 (86)
34 3q8t_A Beclin-1; autophagy, AT 77.8 58 0.002 32.3 15.3 61 393-453 34-94 (96)
35 3mq7_A Bone marrow stromal ant 75.7 59 0.002 33.5 14.3 88 313-410 17-104 (121)
36 1ic2_A Tropomyosin alpha chain 72.5 9.2 0.00032 36.6 7.5 69 240-322 2-70 (81)
37 3a7p_A Autophagy protein 16; c 69.7 23 0.0008 37.8 10.4 63 1058-1120 69-131 (152)
38 3swk_A Vimentin; cytoskeleton, 69.4 33 0.0011 33.4 10.6 78 480-578 5-82 (86)
39 3tnu_B Keratin, type II cytosk 68.8 61 0.0021 33.3 13.2 40 403-442 80-119 (129)
40 3cvf_A Homer-3, homer protein 68.4 13 0.00045 35.9 7.5 72 1186-1257 2-73 (79)
41 3tnu_A Keratin, type I cytoske 66.7 54 0.0018 33.8 12.3 40 403-442 82-121 (131)
42 2jee_A YIIU; FTSZ, septum, coi 65.4 60 0.0021 31.6 11.3 10 377-386 6-15 (81)
43 2i1j_A Moesin; FERM, coiled-co 65.1 7.5 0.00026 49.1 6.7 112 290-415 332-443 (575)
44 2b9c_A Striated-muscle alpha t 64.4 59 0.002 34.6 12.2 9 270-278 8-16 (147)
45 2e7s_A RAB guanine nucleotide 64.0 19 0.00065 37.9 8.2 75 379-453 3-80 (135)
46 1ic2_A Tropomyosin alpha chain 61.0 62 0.0021 30.9 10.6 44 297-340 3-46 (81)
47 2xnx_M M protein, M1-BC1; cell 59.8 30 0.001 36.8 8.8 96 678-787 40-137 (146)
48 3q8t_A Beclin-1; autophagy, AT 59.3 1.4E+02 0.0049 29.5 14.3 83 296-378 7-89 (96)
49 2e7s_A RAB guanine nucleotide 57.6 37 0.0013 35.7 9.1 83 761-854 4-86 (135)
50 2b9c_A Striated-muscle alpha t 56.8 1.7E+02 0.0057 31.1 14.1 103 259-361 18-120 (147)
51 1deb_A APC protein, adenomatou 56.3 35 0.0012 30.4 7.1 47 1031-1077 5-51 (54)
52 3hnw_A Uncharacterized protein 56.2 1E+02 0.0035 32.4 12.2 96 714-810 30-127 (138)
53 3hnw_A Uncharacterized protein 54.2 1.2E+02 0.004 31.9 12.3 40 655-694 30-71 (138)
54 2i1j_A Moesin; FERM, coiled-co 53.7 15 0.00051 46.4 6.6 110 347-456 333-442 (575)
55 3tnu_B Keratin, type II cytosk 53.3 2E+02 0.0068 29.5 13.7 89 232-330 31-119 (129)
56 3cve_A Homer protein homolog 1 52.7 35 0.0012 32.5 7.2 64 1193-1256 3-66 (72)
57 3cve_A Homer protein homolog 1 51.7 36 0.0012 32.4 7.1 56 1250-1305 4-59 (72)
58 3mq9_A Bone marrow stromal ant 50.6 1.7E+02 0.006 35.2 14.9 77 318-411 394-470 (471)
59 3bas_A Myosin heavy chain, str 48.8 77 0.0026 30.9 9.2 39 795-833 44-82 (89)
60 3tnu_A Keratin, type I cytoske 48.7 1.7E+02 0.0059 30.1 12.4 89 232-330 33-121 (131)
61 1x79_B RAB GTPase binding effe 45.3 2.7E+02 0.0093 28.6 12.9 89 389-490 11-106 (112)
62 3oja_A Leucine-rich immune mol 44.7 1.3E+02 0.0044 36.5 12.5 53 732-784 423-475 (487)
63 3s4r_A Vimentin; alpha-helix, 43.7 1.5E+02 0.005 29.3 10.4 28 793-820 63-90 (93)
64 4h22_A Leucine-rich repeat fli 41.6 81 0.0028 31.9 8.2 43 794-836 17-59 (103)
65 3cvf_A Homer-3, homer protein 41.5 71 0.0024 30.9 7.5 41 744-784 6-46 (79)
66 3s4r_A Vimentin; alpha-helix, 40.4 1.6E+02 0.0055 29.0 10.1 82 704-815 11-92 (93)
67 1wt6_A Myotonin-protein kinase 39.3 1E+02 0.0034 30.1 8.1 43 445-487 29-71 (81)
68 1deq_A Fibrinogen (alpha chain 36.8 4E+02 0.014 32.3 14.4 66 377-442 92-157 (390)
69 3mq9_A Bone marrow stromal ant 34.0 5.5E+02 0.019 30.9 15.7 13 26-38 31-43 (471)
70 2eqb_B RAB guanine nucleotide 33.6 3.8E+02 0.013 26.9 13.5 41 429-469 8-48 (97)
71 2w83_C C-JUN-amino-terminal ki 33.5 1.7E+02 0.0059 28.2 8.5 71 767-837 4-74 (77)
72 3ghg_A Fibrinogen alpha chain; 32.9 4E+02 0.014 33.6 13.9 45 417-461 115-159 (562)
73 2oqq_A Transcription factor HY 32.3 63 0.0022 27.9 4.9 32 751-782 10-41 (42)
74 3qh9_A Liprin-beta-2; coiled-c 32.2 1.1E+02 0.0036 29.9 7.0 56 542-597 23-78 (81)
75 2w83_C C-JUN-amino-terminal ki 31.4 1.7E+02 0.0057 28.3 8.1 55 713-767 20-74 (77)
76 2akf_A Coronin-1A; coiled coil 30.9 43 0.0015 26.8 3.4 29 379-407 1-29 (32)
77 1d7m_A Cortexillin I; coiled-c 30.3 4.1E+02 0.014 26.3 11.3 81 760-843 6-87 (101)
78 3oja_A Leucine-rich immune mol 30.1 8E+02 0.027 29.6 16.5 6 451-456 453-458 (487)
79 1jnm_A Proto-oncogene C-JUN; B 28.9 30 0.001 31.5 2.6 31 1393-1423 22-52 (62)
80 1deq_A Fibrinogen (alpha chain 28.8 6.8E+02 0.023 30.5 14.5 41 486-526 117-157 (390)
81 3s9g_A Protein hexim1; cyclin 27.5 3.2E+02 0.011 27.5 9.6 57 431-487 35-91 (104)
82 2z5i_A TM, general control pro 27.5 1.3E+02 0.0045 26.9 6.4 37 229-265 4-40 (52)
83 4emc_A Monopolin complex subun 27.4 2.2E+02 0.0075 31.6 9.4 28 393-420 29-56 (190)
84 1l8d_A DNA double-strand break 27.4 3.2E+02 0.011 26.9 10.0 42 752-793 4-45 (112)
85 4h22_A Leucine-rich repeat fli 26.6 2.7E+02 0.0092 28.2 9.1 75 778-852 8-82 (103)
86 2oqq_A Transcription factor HY 26.6 89 0.003 27.0 4.8 33 711-743 5-37 (42)
87 2v4h_A NF-kappa-B essential mo 25.6 3E+02 0.01 28.2 9.2 44 774-817 64-107 (110)
88 1m1j_C Fibrinogen gamma chain; 25.4 4.8E+02 0.016 31.9 12.9 9 377-385 91-99 (409)
89 1go4_E MAD1 (mitotic arrest de 25.0 4.2E+02 0.014 26.7 10.2 34 397-430 11-44 (100)
90 3i00_A HIP-I, huntingtin-inter 24.5 3E+02 0.01 28.4 9.3 42 407-448 17-62 (120)
91 3a7o_A Autophagy protein 16; c 24.4 3.5E+02 0.012 25.8 8.7 45 320-364 31-75 (75)
92 3i00_A HIP-I, huntingtin-inter 23.5 3E+02 0.01 28.4 9.1 60 349-411 15-74 (120)
93 2v4h_A NF-kappa-B essential mo 23.5 6.1E+02 0.021 26.0 11.1 48 1085-1132 62-109 (110)
94 1t2k_D Cyclic-AMP-dependent tr 23.3 49 0.0017 29.9 3.0 28 1391-1418 20-47 (61)
95 2eqb_B RAB guanine nucleotide 23.2 5.8E+02 0.02 25.6 13.9 29 424-452 31-59 (97)
96 1ci6_A Transcription factor AT 22.6 51 0.0018 30.2 3.0 36 1381-1416 25-60 (63)
97 1fxk_C Protein (prefoldin); ar 22.3 6.2E+02 0.021 25.6 13.9 40 340-383 6-45 (133)
98 2w6a_A ARF GTPase-activating p 21.6 2.5E+02 0.0084 26.0 6.9 23 1059-1081 22-44 (63)
99 2ehw_A Hypothetical protein TT 21.2 1.3E+02 0.0045 30.9 5.8 64 27-106 55-118 (120)
100 1gk4_A Vimentin; intermediate 21.0 3.2E+02 0.011 26.2 8.3 38 800-837 33-70 (84)
101 1m1j_C Fibrinogen gamma chain; 20.6 9.2E+02 0.032 29.5 14.0 45 425-469 83-127 (409)
102 1t2k_D Cyclic-AMP-dependent tr 20.1 97 0.0033 28.0 4.2 39 1380-1418 23-61 (61)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.99 E-value=8.1e-06 Score=88.38 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000216 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSH 276 (1849)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~ 276 (1849)
+.||+.+..|+.+-+...-.+...-.++..++..+..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777665555444444444444444444433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.55 E-value=4e-07 Score=121.87 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=4.6
Q ss_pred HHHHHHhh
Q 000216 42 QMIKLIEE 49 (1849)
Q Consensus 42 ~~lkli~e 49 (1849)
.++.+|++
T Consensus 535 Gil~lLde 542 (1184)
T 1i84_S 535 GVLALLDE 542 (1184)
T ss_dssp CHHHHHHH
T ss_pred Cchhhhhh
Confidence 45566655
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.43 E-value=2.7e-07 Score=123.59 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhccccc
Q 000216 558 GTRNQSLQEEVEKVKEENKGLNEL 581 (1849)
Q Consensus 558 E~~~~~L~~ev~~~kEEn~~Lne~ 581 (1849)
+....+|..++..+++.+..+.+.
T Consensus 1143 e~q~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1143 EKQKRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333444444444444444444443
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.80 E-value=0.097 Score=57.49 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000216 426 LQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKEL 505 (1849)
Q Consensus 426 l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei 505 (1849)
..+.+....+..|+.++..-|+..+-|-.|++.. |..+|.++..|...+..|..|.+.+..|......+ .
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-------~ 86 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-------S 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3444555556666666666666665555555443 33444455555555555555555554443322222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccch
Q 000216 506 GRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSS 585 (1849)
Q Consensus 506 ~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS 585 (1849)
....+. .|.++..|..........+.++|..+-+|+....-+
T Consensus 87 ~~~~~~------------------------Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~-------------- 128 (189)
T 2v71_A 87 YKQVSV------------------------LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT-------------- 128 (189)
T ss_dssp HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------
Confidence 111111 123455555555555666777777777777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 586 AESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQA 640 (1849)
Q Consensus 586 ~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~ 640 (1849)
+.|+.++..-+...-|.+.-|+.|+. +|..|+.++.++++++.+|......
T Consensus 129 ~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDLk~El~v 179 (189)
T 2v71_A 129 IMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDLRQELAV 179 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC----------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55999999999999999999999776 8999999999999999988865543
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.20 E-value=0.32 Score=53.46 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhH
Q 000216 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHK----LARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQ 478 (1849)
Q Consensus 403 ~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~e----lS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q 478 (1849)
++.++..+.+.+..|...+..+...++....|+.....+ ++..|.++..|....+.+..++.++|..+..||+..-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444444444444444444444444444444 6667777778888888888899999999888887776
Q ss_pred HHHHHHHHHHHHhhh
Q 000216 479 TLHSELESMVQKMGS 493 (1849)
Q Consensus 479 ~L~~E~e~L~qk~~~ 493 (1849)
..-+=++.+..+++.
T Consensus 127 ~~~~SleD~e~kln~ 141 (189)
T 2v71_A 127 ATIMSLEDFEQRLNQ 141 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHH
Confidence 666655555544443
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.76 E-value=1.3 Score=47.80 Aligned_cols=132 Identities=25% Similarity=0.287 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchh---HhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHH
Q 000216 263 SLERLSNLESEVSHAREDSKGLSE---QASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVE 339 (1849)
Q Consensus 263 slek~~~LE~eis~aQ~~~~~L~e---ra~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~ 339 (1849)
+-+|+..||++|.+|++..+.-.+ |..+..+| +...++.++.-+++
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tE-------------------------------l~k~~~~~E~~~rE 52 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTE-------------------------------MSKSISQLESLNRE 52 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHH
Confidence 457889999999998876433322 11112222 22333444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000216 340 LSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTE 419 (1849)
Q Consensus 340 lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~E 419 (1849)
+.++...++..-..|-+++..+.+.-+.-.--..+--++|.+|+.+|..+++++.++......+..+...|...|..++.
T Consensus 53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 53 LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777778887776655554444567789999999999999888888888777777777777776666666
Q ss_pred HHHHHH
Q 000216 420 EKEALA 425 (1849)
Q Consensus 420 ekeal~ 425 (1849)
++..+.
T Consensus 133 e~a~~e 138 (168)
T 3o0z_A 133 EKNNLE 138 (168)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 655544
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.69 E-value=1.4 Score=64.84 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHH
Q 000216 246 LAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEAL 302 (1849)
Q Consensus 246 i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~l 302 (1849)
+..-..|-......|+.+|+|+.+-..++..||.++..+.-....+..++..+...+
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556667777777777777777777766555544444444444444444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.50 E-value=1.6 Score=49.63 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000216 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 448 Ev~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
+...|..||+....+...+|.....+......+......+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333333333333333333
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.96 E-value=2.9 Score=45.32 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=49.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 389 SEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELD 457 (1849)
Q Consensus 389 aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie 457 (1849)
++..++.|...+..++..-..|.+++..|....+.......+..+.|..|+..+...+.+++|++.-..
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666677777777777777777777778888888888888888888888765433
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.52 E-value=0.7 Score=47.75 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=77.9
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000216 701 ENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1849)
Q Consensus 701 E~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K 780 (1849)
+..+.....++..+++++...+....-|......+..|+..|..||+.-+..+.+..+.+..|-.+-.++...+..+..+
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888899999999999999998888887777777666655555555555555
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 000216 781 SKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDL 819 (1849)
Q Consensus 781 ~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~l 819 (1849)
+.+.++....+ .+++..|..++..+...+..+
T Consensus 92 leeeee~~~~L-------~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 92 LEDEEEMNAEL-------TAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444 555555555555555444443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.47 E-value=4.5 Score=59.88 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 000216 1476 FTDLQMRVKAIEKAII 1491 (1849)
Q Consensus 1476 ~~dl~~rIkai~~~v~ 1491 (1849)
+.||..|++.++.-+.
T Consensus 3080 ~~dL~~R~~~l~~W~~ 3095 (3245)
T 3vkg_A 3080 ISDFSKRMQQLSEISE 3095 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4447777777766543
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.30 E-value=18 Score=49.03 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHhhh-------hhhHHHHHHHhh
Q 000216 33 LTDMDVKVKQMIKLIEED-------ADSFARRAEMYY 62 (1849)
Q Consensus 33 l~~md~kvk~~lkli~ed-------~dsfa~raemyy 62 (1849)
+.-++.+ ..+|.+|+|. .++|..+.--.+
T Consensus 496 idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 496 INLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTH 531 (1080)
T ss_dssp HHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHh
Confidence 3344555 6788888774 356666654333
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.65 E-value=0.83 Score=45.54 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000216 239 ILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQ 318 (1849)
Q Consensus 239 I~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykq 318 (1849)
++.+|+-+..|+.|+|.+.-.|.++=.++ +.+.+++.+++.++.+|.-.+..++.+.+.+--++..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~--------------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK--------------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988766665443333 3344567778889999999998888888877767777
Q ss_pred HHHHHHhHHHHHhhhHHhHHHHHHHHHH
Q 000216 319 CLDKLSNMEKNISRAEADAVELSDRASK 346 (1849)
Q Consensus 319 ClEkis~LE~~~s~aqeeak~lnera~~ 346 (1849)
...++..-+...+.|+.++..+|.|+.-
T Consensus 70 a~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 70 SEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666666666666543
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.46 E-value=9.7 Score=40.85 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000216 434 AISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELG 506 (1849)
Q Consensus 434 kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~ 506 (1849)
.+.+||..--.+..--......|..+..+|+++|.+...-|+++..|+.+++.+...+............+++
T Consensus 57 nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 57 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333344444445566777888888888888888888888888777776555544443333344433
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.09 E-value=0.98 Score=44.88 Aligned_cols=94 Identities=26% Similarity=0.314 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000216 239 ILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQ 318 (1849)
Q Consensus 239 I~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykq 318 (1849)
++.+|+-+..|+.|+|.+.-.+++ ++.++ +.+.+++.+++.++.+|+-.+..++.+.+.+--++..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~-------~e~~~-------k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQ-------AEADK-------KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999886655544 43333 3344567788999999999999999988888777777
Q ss_pred HHHHHHhHHHHHhhhHHhHHHHHHHHHH
Q 000216 319 CLDKLSNMEKNISRAEADAVELSDRASK 346 (1849)
Q Consensus 319 ClEkis~LE~~~s~aqeeak~lnera~~ 346 (1849)
+..++-.-+.....|+.++..+|.|+.-
T Consensus 70 a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 70 AQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777543
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.91 E-value=1.3 Score=59.66 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=25.7
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHH
Q 000216 751 ENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARK 814 (1849)
Q Consensus 751 ~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~ 814 (1849)
.++..|.++...|+..+..+..|++.+..+...+.+ .+...-++|..++..|..|++.++.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333332 2223333334444444444444443
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.07 E-value=19 Score=38.68 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000216 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ 429 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~q 429 (1849)
++-..++.+|..+...++..-.+++-++..|..|...|..|+....+....|.
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555566666666666666666665555554443333
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.44 E-value=19 Score=37.15 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 391 EDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLAR 444 (1849)
Q Consensus 391 e~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~ 444 (1849)
+....+...+...+.....|.....++..++..+..+++.-...+...+.....
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~ 73 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQ 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333343444444444444545555555555555544444444444433333
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.98 E-value=14 Score=36.78 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=53.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000216 352 QTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQC 431 (1849)
Q Consensus 352 ~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~ 431 (1849)
.++|..+..+.-++|.+.=+|.+|=.. ++..+.+...++.++..|...+..++.+.+....++...
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~--------------~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEAD--------------KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666667664333333222 233334455566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 432 LEAISILEHKLARAEEEAQRLHSELD 457 (1849)
Q Consensus 432 ~~kI~~LE~elS~sQeEv~RL~~Eie 457 (1849)
..++..-+...+.+..++..|++-|+
T Consensus 71 ~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 71 EDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655544
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.73 E-value=15 Score=36.46 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=58.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000216 352 QTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQC 431 (1849)
Q Consensus 352 ~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~ 431 (1849)
.++|..+..+.-++|.+.=++.+| +..++..+.+...++.++..|+..+..++.+.+....++...
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~--------------e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQA--------------EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677664333332 222333344556677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 432 LEAISILEHKLARAEEEAQRLHSELD 457 (1849)
Q Consensus 432 ~~kI~~LE~elS~sQeEv~RL~~Eie 457 (1849)
..++..-+...+.+..++..|++-|+
T Consensus 71 ~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 71 QEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766654
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.12 E-value=8.1 Score=47.85 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000216 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1849)
Q Consensus 424 l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE 467 (1849)
....++...+.+..++..+...+..+.+++.|+....++++.++
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.12 E-value=6.1 Score=40.43 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhh
Q 000216 798 LITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQIS 877 (1849)
Q Consensus 798 l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~ 877 (1849)
+..+++.|..++++++..+.+.+.+|+++.....++..++...-.+|... -..-.+||.+|.
T Consensus 32 ~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~------------------~l~r~dLE~~ie 93 (119)
T 3ol1_A 32 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA------------------SLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH------------------HHHHHHHHHHHH
Confidence 37899999999999999999999999998877766666554444443221 122357999999
Q ss_pred hHHHHhhhhhhhhHHHHHH
Q 000216 878 FLQEEGLCRKKAYEEELDK 896 (1849)
Q Consensus 878 ~LqEe~~~~~~~~eeE~dk 896 (1849)
.|.++...+++.|++|+..
T Consensus 94 sL~eEl~FLKk~heeEl~e 112 (119)
T 3ol1_A 94 SLQEEIAFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.24 E-value=6.5 Score=38.10 Aligned_cols=61 Identities=34% Similarity=0.408 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000216 586 AESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 586 ~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
..+|.-||.|+..||+-+..|..++..-.+.+.+|.++..+++++...-..+..++...+.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5678889999999999999999999888888999999999999999999888888887664
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.57 E-value=43 Score=36.00 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 424 LALQYQQCLEAISILEHKLARAEEEAQRLHS 454 (1849)
Q Consensus 424 l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~ 454 (1849)
+..++.+..++.++||..++.+..++.....
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ 34 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKA 34 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888888888766544
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.28 E-value=21 Score=38.29 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=72.9
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchh
Q 000216 755 KLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLE 834 (1849)
Q Consensus 755 ~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq 834 (1849)
.--.+.+.||-.|+.+..++++.+.+++.+|..- .+ ...+...+..+..++..|...+++...+-..+.
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r----~~-------~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE 78 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLK----ED-------YNTLKRELSDRDDEVKRLREDIAKENELRTKAE 78 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----HH-------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999998532 22 333445566688888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 000216 835 EEKESTLQKVEELQFSLDAE 854 (1849)
Q Consensus 835 ~Eke~~~~~veel~~sL~~e 854 (1849)
.++...-++|++|-.+|--|
T Consensus 79 ~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999666
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.93 E-value=4.9 Score=39.22 Aligned_cols=73 Identities=18% Similarity=0.353 Sum_probs=54.2
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Q 000216 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVE 775 (1849)
Q Consensus 703 SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE 775 (1849)
.+.....++..++++....+....-|......|..||..|..|+.....++..|......||..+.+++..++
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666666666666666666666667777777777777888888999999999999999999887764
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.09 E-value=15 Score=37.57 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000216 722 EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITE 801 (1849)
Q Consensus 722 Eesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~E 801 (1849)
+.-...|+....++..||+.|..++..+..-++++-.|+-.=-+.- ..+|.-+..++..--...--
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r--------------~~~E~di~~lrK~lD~~~l~ 84 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQR--------------EEAENTLQSFRQDVDNASLA 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------HHHHHHHHHhhhcccHHHHH
Confidence 3444456666667778888888888888777777666553321222 22333444444444444556
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 000216 802 RVNLVSQLDIARKGLKDLEKSYAEL 826 (1849)
Q Consensus 802 k~~L~sQl~~~~~~l~~lek~~~el 826 (1849)
+..|.+++.++++++.++++-|.++
T Consensus 85 r~dLE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999998764
No 28
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=82.66 E-value=50 Score=34.49 Aligned_cols=146 Identities=23% Similarity=0.221 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000216 625 YCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSL 704 (1849)
Q Consensus 625 ~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SL 704 (1849)
+.+..+.+.+++...-..+.+.-+|--+.--+++|-.||..|.--+-++.++++|-..+--+++-.++++-+|+.-.+--
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQ 93 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQ 93 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHh
Confidence 34444555555544444444444444344447899999999999999999999999999999999999998888766543
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000216 705 SDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL 784 (1849)
Q Consensus 705 Sd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~l 784 (1849)
|= .+-- +..||.- ..||++.| +++|++.+- +..|++.-+.|..+.
T Consensus 94 Sl---DiRK----LrELEAD-----------LKEKDsMV---e~LT~TiG~--------------LrKELEdEklK~~E~ 138 (167)
T 4gkw_A 94 SL---DMRK----LGELEAD-----------LKEKDSMV---ESLTETIGI--------------LRKELENEKLKAAEN 138 (167)
T ss_dssp HH---HHHH----THHHHHT-----------HHHHHHHH---HHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred hh---hHHH----HHHHHhH-----------HhhhhHHH---HHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 32 1111 2222221 13455444 344444443 345677777777888
Q ss_pred HHHHHHhhhhhhhhHHHHHHH
Q 000216 785 EDSCLLLDNEKSCLITERVNL 805 (1849)
Q Consensus 785 Ees~~~l~~e~s~l~~Ek~~L 805 (1849)
=+|+..|+-++-++..+.+.-
T Consensus 139 MdSFE~LkvENE~vkerl~mY 159 (167)
T 4gkw_A 139 MDSFEKLSMENENLKEKIAHY 159 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHhHHHHHHHH
Confidence 888888888777766555443
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.53 E-value=46 Score=34.01 Aligned_cols=96 Identities=28% Similarity=0.339 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000216 348 EIEAQTLKLDLARIEAEKEAAVVKYEECS----RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA 423 (1849)
Q Consensus 348 E~Ev~~LKqel~~l~eEKEa~~lqyqQcL----e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekea 423 (1849)
+.....|+..+.++..|.|...-.|+++. ..|+.|+.+|.. +...-+.++..|..|+-.+|.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~--------------lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ--------------TRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhchH
Confidence 33445556666666666665555555542 345555555433 444445566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELD 457 (1849)
Q Consensus 424 l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie 457 (1849)
+.-..-.....+.++|..+.++=+..-=|-.|++
T Consensus 68 LER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 68 LERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666555555555554
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.16 E-value=32 Score=35.17 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 000216 442 LARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMG 492 (1849)
Q Consensus 442 lS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~ 492 (1849)
++..|.++..|...-+....+++++|+.+..||+..-..-+=++.+..+++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 444666666777777888889999999999998877766666665554443
No 31
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.11 E-value=42 Score=34.53 Aligned_cols=83 Identities=24% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 372 YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1849)
Q Consensus 372 yqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~R 451 (1849)
-++|-+.-.=|+.++..|++.++.-..++-.--..+..|+.. |.+++.--+.+++.+...|.+|-..+..+-+++.|
T Consensus 20 q~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~S---L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS---LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888877665555444444444444442 22222111333444444444444444444444444
Q ss_pred HHHHHH
Q 000216 452 LHSELD 457 (1849)
Q Consensus 452 L~~Eie 457 (1849)
|..+.+
T Consensus 97 lr~~~~ 102 (121)
T 3mq7_A 97 LRRENQ 102 (121)
T ss_dssp HHHHHH
T ss_pred HHhhch
Confidence 444433
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.08 E-value=8.5 Score=41.11 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=57.0
Q ss_pred HHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000216 742 LFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEK 821 (1849)
Q Consensus 742 LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek 821 (1849)
+||+++.... .+..++.++..++.++.++++.+..-......+..|...|--|+..++.++..+++
T Consensus 59 ~vs~~~~~~~--------------~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 59 IVSHDDALLN--------------TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777754433 44556666666667777777666666666666788888889999999999999999
Q ss_pred HHHHHhhhhhc
Q 000216 822 SYAELEGRYLG 832 (1849)
Q Consensus 822 ~~~ele~k~~~ 832 (1849)
++..|-+|...
T Consensus 125 EN~~LV~RWM~ 135 (152)
T 3a7p_A 125 EHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877653
No 33
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.45 E-value=8.1 Score=37.58 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhh
Q 000216 797 CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQI 876 (1849)
Q Consensus 797 ~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i 876 (1849)
++..+++.+..++++++......+.+|+++-....++..++...-.+|-..-. --.+||.+|
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l------------------~r~dLE~kv 72 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL------------------ARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH------------------HHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------------------HHHHHHHHH
Confidence 34789999999999999999999999999999998888888665555543321 235788888
Q ss_pred hhHHHHhhhhhhh
Q 000216 877 SFLQEEGLCRKKA 889 (1849)
Q Consensus 877 ~~LqEe~~~~~~~ 889 (1849)
.+|+++...+++.
T Consensus 73 esL~eEl~fLkk~ 85 (86)
T 3swk_A 73 ESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhc
Confidence 8888888777654
No 34
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.80 E-value=58 Score=32.27 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 393 SKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1849)
Q Consensus 393 ~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~ 453 (1849)
-..+...+..++.+...|..+=...+.+.-+...+..++.+...++++.+..++..+.+|.
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566777788888888877888888888999999999999999999999999988875
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.67 E-value=59 Score=33.47 Aligned_cols=88 Identities=13% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHh
Q 000216 313 IRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEED 392 (1849)
Q Consensus 313 llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~ 392 (1849)
|..-+.|-..--=|+.++.+|++-.+.-.-++.--..-|.+|+..|....+.. ...+.+|+.+|..+...
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~----------q~~vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG----------QKKVEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 33446788888889999999999998888888888888888888766554322 33455555554444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000216 393 SKRINKVADKAESEVERL 410 (1849)
Q Consensus 393 ~~~ln~~~e~~e~ev~~L 410 (1849)
+....+.+++++.+.+.+
T Consensus 87 Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 87 LQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchhh
Confidence 333334344443333333
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.49 E-value=9.2 Score=36.55 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000216 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQC 319 (1849)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqC 319 (1849)
+.+|+-+..|+.|+|.+.-.++++-.++-..+.. +..++.++.+|.-.+..++.+.+.+--++...
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~--------------~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEER--------------SKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999888777766666665544 45566777777777777776666554444333
Q ss_pred HHH
Q 000216 320 LDK 322 (1849)
Q Consensus 320 lEk 322 (1849)
..+
T Consensus 68 ~~k 70 (81)
T 1ic2_A 68 QEK 70 (81)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 37
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.68 E-value=23 Score=37.84 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=50.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhH
Q 000216 1058 QFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLD 1120 (1849)
Q Consensus 1058 q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~ 1120 (1849)
....|+.+...|..-..+|..++.......+.+..|+..|+.++.-+.+....++.||..+++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666667788888777778889999999999999999999999999888765
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.35 E-value=33 Score=33.38 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhh
Q 000216 480 LHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT 559 (1849)
Q Consensus 480 L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~ 559 (1849)
|+.+...+....+-..-++...+..++.++.-.++|...+..+|..+..| ...+.+...
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L---------------------rkdvD~a~l 63 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF---------------------RQDVDNASL 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HhhHHHHHH
Confidence 34444444444444455566667788999999999999999999887775 233455555
Q ss_pred hhHHHHHHHHHHHHHhhcc
Q 000216 560 RNQSLQEEVEKVKEENKGL 578 (1849)
Q Consensus 560 ~~~~L~~ev~~~kEEn~~L 578 (1849)
.+.+|+..|..+++|+.-|
T Consensus 64 ~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 64 ARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666443
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.75 E-value=61 Score=33.31 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442 (1849)
Q Consensus 403 ~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~el 442 (1849)
+...+..|..++..++.+.....-.|+.+++-=..|+-+|
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555444444443
No 40
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=68.45 E-value=13 Score=35.88 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHHHh
Q 000216 1186 NELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCS 1257 (1849)
Q Consensus 1186 ~~L~~~v~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~~~~~~l~qk~~elleae~~~~~ 1257 (1849)
.+|..+...+..|+++++++|..|.+.|..+...|...+.-.+++-.++......|-.|=.+|.+....+.-
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456667778899999999999999999999999999999999999988888888887777777666665543
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.73 E-value=54 Score=33.85 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442 (1849)
Q Consensus 403 ~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~el 442 (1849)
+...+..|..++..++.+.....-.|+.+++-=..|+-+|
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555655555444444443
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.37 E-value=60 Score=31.58 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=4.4
Q ss_pred HHhHHHHHhh
Q 000216 377 RMISALEDKL 386 (1849)
Q Consensus 377 e~IS~LE~kI 386 (1849)
+..+.||.+|
T Consensus 6 ElleqLE~KI 15 (81)
T 2jee_A 6 EVFEKLEAKV 15 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 43
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.15 E-value=7.5 Score=49.08 Aligned_cols=112 Identities=23% Similarity=0.330 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000216 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1849)
Q Consensus 290 ~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~ 369 (1849)
.|+.+-..|+..+.+++++...+-..+....+++--|+.+...+++++..+...+..|+.+...|...-..-.+|++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~-- 409 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQK-- 409 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--
Confidence 467778888889999998888888888899999999999999999999999999999999999988876666666654
Q ss_pred HHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 000216 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALG 415 (1849)
Q Consensus 370 lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~ 415 (1849)
|+.++..++..+.++.+..++-+.++..|+.++.
T Consensus 410 ------------l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 443 (575)
T 2i1j_A 410 ------------LEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVE 443 (575)
T ss_dssp --------------------------------------------CH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555433
No 44
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=64.38 E-value=59 Score=34.55 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=2.2
Q ss_pred HHHHHHHHH
Q 000216 270 LESEVSHAR 278 (1849)
Q Consensus 270 LE~eis~aQ 278 (1849)
||.++..++
T Consensus 8 lEeeLer~e 16 (147)
T 2b9c_A 8 VEEELDRAQ 16 (147)
T ss_dssp ---CCGGGG
T ss_pred HHHHHHHHH
Confidence 333333333
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.98 E-value=19 Score=37.89 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=38.2
Q ss_pred hHHHHHhhhhhHHhHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 379 ISALEDKLLHSEEDSKRINKVADKA---ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1849)
Q Consensus 379 IS~LE~kI~~aee~~~~ln~~~e~~---e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~ 453 (1849)
.|.||..+.++.-+.......+... +.+++.+...+..+..+...+...+..-..+=...|........|+.-|.
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777766666554433 33555555555445555555555554444444444444444444444443
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=61.01 E-value=62 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHH
Q 000216 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVEL 340 (1849)
Q Consensus 297 sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~l 340 (1849)
+++..+..|+.+.+.+.-++.+|...+-..+.....+..++..+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L 46 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVAL 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555666667777776665555555544444443333333333
No 47
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=59.80 E-value=30 Score=36.77 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHh
Q 000216 678 CEKVALLEKLEIMEKLL--EKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKK 755 (1849)
Q Consensus 678 ~EK~~L~~kLq~mekLl--Ekns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~ 755 (1849)
.++..|-+..++.+... -+-.+||+.+..+...|+.+|...+.++.-..-+..++-.|. ..+.+
T Consensus 40 ~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~Le--------------AE~aK 105 (146)
T 2xnx_M 40 LEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLT--------------IEKAK 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH--------------HHHHH
Confidence 44555555555544433 234578899999999999999999998887777766654443 44667
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 000216 756 LSDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787 (1849)
Q Consensus 756 L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes 787 (1849)
|.+.+..++.|--.+..+++-.|...+.+|--
T Consensus 106 LeEekQIseASRqgLrRDLeASReAKKqlEad 137 (146)
T 2xnx_M 106 LEEEKQISDASRQSLRRDLDASREAKKQVEKD 137 (146)
T ss_dssp HGGGTTTC------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888877776643
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.26 E-value=1.4e+02 Score=29.49 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000216 296 QTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC 375 (1849)
Q Consensus 296 ~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQc 375 (1849)
.+|..+|..|..+....+-++..-...-..+...+...+.++..++..-..--.+..+++-.+.....|.++...||.-+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444443333333222233344444444445555544444444455555555555555555555555444
Q ss_pred HHH
Q 000216 376 SRM 378 (1849)
Q Consensus 376 Le~ 378 (1849)
..-
T Consensus 87 ~~q 89 (96)
T 3q8t_A 87 QMQ 89 (96)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.60 E-value=37 Score=35.74 Aligned_cols=83 Identities=20% Similarity=0.152 Sum_probs=66.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHH
Q 000216 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKEST 840 (1849)
Q Consensus 761 s~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~ 840 (1849)
|.||..|+++...+.+.+.+++.++..- .+...+.+.+..+..++..|...+++...+-..+..++...
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~l~-----------~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 72 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQLK-----------EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 72 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999887532 23333444556777788888888888888888899999999
Q ss_pred HHHHHHHHHhHHHH
Q 000216 841 LQKVEELQFSLDAE 854 (1849)
Q Consensus 841 ~~~veel~~sL~~e 854 (1849)
-.+|++|-.+|--|
T Consensus 73 e~ElE~LTasLFeE 86 (135)
T 2e7s_A 73 NKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999666
No 50
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=56.85 E-value=1.7e+02 Score=31.11 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHH
Q 000216 259 QYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAV 338 (1849)
Q Consensus 259 qY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak 338 (1849)
.....+.|+.+.+....+.+--.+.|..|....+..+..|...|......-+-+---|...--+|..++..+.++.+.+.
T Consensus 18 rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333444444444444444443333322222222222355555666666666666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 000216 339 ELSDRASKAEIEAQTLKLDLARI 361 (1849)
Q Consensus 339 ~lnera~~AE~Ev~~LKqel~~l 361 (1849)
....++...+.++...-+.+-.+
T Consensus 98 ~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444433333
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.31 E-value=35 Score=30.45 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000216 1031 LGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELR 1077 (1849)
Q Consensus 1031 l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~ 1077 (1849)
+.||...++.|.-|++.|+.|++.-|.++.-|..+...+.++-.+|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 56889999999999999999999999999999999998888766664
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.24 E-value=1e+02 Score=32.37 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHh--hhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 000216 714 VRDKVKALEEVCQNLLAE--KSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL 791 (1849)
Q Consensus 714 LR~K~k~LEesc~~L~~E--Ks~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l 791 (1849)
|+.=..-+.+-...+... -..+-.++-+++.-|.+..+=+ ++.+++..|+..+.+...|+..++..+..+......+
T Consensus 30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~-k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF-KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445432 4556678888888888775433 2344444444444444444444444444444444444
Q ss_pred hhhhhhhHHHHHHHHHhHH
Q 000216 792 DNEKSCLITERVNLVSQLD 810 (1849)
Q Consensus 792 ~~e~s~l~~Ek~~L~sQl~ 810 (1849)
..+...+..+...|.-++-
T Consensus 109 ~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.15 E-value=1.2e+02 Score=31.91 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHhhhhH--HHHHHhHHHHHHHHHHHHHHHHHH
Q 000216 655 FGLSVKELQDENSKLK--EVYERDRCEKVALLEKLEIMEKLL 694 (1849)
Q Consensus 655 ~~~~vkeLQ~~n~~Lk--e~~s~~~~EK~~L~~kLq~mekLl 694 (1849)
++..+.-+-+....++ +--.....++.+++.-|-..+.++
T Consensus 30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~ 71 (138)
T 3hnw_A 30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444445555555 335566778888888888766554
No 54
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.71 E-value=15 Score=46.42 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000216 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALAL 426 (1849)
Q Consensus 347 AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l 426 (1849)
|+.+-..|...+..+++|...+.--....-+++..|+.+...|++.+..|......++.+...|...-.+-.++++.|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~ 412 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLED 412 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444555555555555555554444455678888888888888877777776656666655555554444555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 427 QYQQCLEAISILEHKLARAEEEAQRLHSEL 456 (1849)
Q Consensus 427 ~~qq~~~kI~~LE~elS~sQeEv~RL~~Ei 456 (1849)
+.......+..|..+.....+|+.+|..++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 442 (575)
T 2i1j_A 413 EIRAKQEEVSRIQQEVELKDSETRRLQEEV 442 (575)
T ss_dssp -----------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.34 E-value=2e+02 Score=29.49 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000216 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1849)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea 311 (1849)
...|..||..|+.+|..|+.|-+..+.+- ..||..|.++...- ......+...+..|..+|+++..+-..
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~-------~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQC-------ANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678999999999999999988776664 34444554443321 111122344455555566655555555
Q ss_pred hHHHHHHHHHHHHhHHHHH
Q 000216 312 NIRQYQQCLDKLSNMEKNI 330 (1849)
Q Consensus 312 ~llQykqClEkis~LE~~~ 330 (1849)
-+-.|+.-++-=..|+-.|
T Consensus 101 ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 101 LLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555665555444444444
No 56
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.74 E-value=35 Score=32.52 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=53.0
Q ss_pred HHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHHH
Q 000216 1193 RLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256 (1849)
Q Consensus 1193 ~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~~~~~~l~qk~~elleae~~~~ 1256 (1849)
..+..|+++++++|..|.+.+..+...|...+.-.+++-.++......|-.|=.+|.+....+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999988888888777777666666655543
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=51.66 E-value=36 Score=32.42 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=46.8
Q ss_pred HHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHHHHhhhhhhHHHhhhhhhhhhhhHH
Q 000216 1250 VAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETR 1305 (1849)
Q Consensus 1250 eae~~~~~~~~~~~El~~~ve~Lk~~~~ea~~i~e~~ekqi~~Ls~~~~~q~~Ei~ 1305 (1849)
++-.+++++...|++|.+.|.+|+...++++.=++.+...+..+-+.-|..-.|+-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45678999999999999999999999999999888888888887777765544433
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.59 E-value=1.7e+02 Score=35.21 Aligned_cols=77 Identities=19% Similarity=0.304 Sum_probs=48.9
Q ss_pred HHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHH
Q 000216 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRIN 397 (1849)
Q Consensus 318 qClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln 397 (1849)
+|...-.-|+.++..++...-.+..++..+..-|-+|+..|.+..+ |.+.+|.+||.+|. .+|
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-------~~~ 456 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA----------QGQKKVEELEGEIT-------TLN 456 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-------HHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-------HHH
Confidence 5666667777888888877777777777777777777766544322 22246666666543 445
Q ss_pred HHHHHHHHHHHHHH
Q 000216 398 KVADKAESEVERLK 411 (1849)
Q Consensus 398 ~~~e~~e~ev~~Lk 411 (1849)
.++++++.+++.++
T Consensus 457 ~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 457 HKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 55556666655543
No 59
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=48.77 E-value=77 Score=30.86 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=19.5
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhch
Q 000216 795 KSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGL 833 (1849)
Q Consensus 795 ~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~l 833 (1849)
+..|..+++.|..|+....+....|.+...+|+.++.++
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555554445555555544444444444443
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.68 E-value=1.7e+02 Score=30.06 Aligned_cols=89 Identities=24% Similarity=0.342 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000216 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1849)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea 311 (1849)
...+..||..|+.+|..|+.|-+..+.+- ..||..|.++...- ......+...+..|..+|+++..+-..
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~-------~sLE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMK-------ASLENSLEETKGRY---CMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999887766654 34444554443321 111122344455555556555555555
Q ss_pred hHHHHHHHHHHHHhHHHHH
Q 000216 312 NIRQYQQCLDKLSNMEKNI 330 (1849)
Q Consensus 312 ~llQykqClEkis~LE~~~ 330 (1849)
-+-.|+.-++-=..|+-.|
T Consensus 103 ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 103 QNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555665555444444444
No 61
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.27 E-value=2.7e+02 Score=28.56 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=33.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000216 389 SEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-------LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1849)
Q Consensus 389 aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekea-------l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~ 461 (1849)
++...+.++..+.++...-..|... +++.+++ +..+++..+.-|.+|....++++..+ .....
T Consensus 11 lq~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v-------q~qL~ 80 (112)
T 1x79_B 11 LQLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV-------QEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3444455555555555555555553 3333344 44444555555555555555554444 33333
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000216 462 KLKGAEEKCLLLERSNQTLHSELESMVQK 490 (1849)
Q Consensus 462 kLk~lE~~~~~LE~~~q~L~~E~e~L~qk 490 (1849)
+|...=++ +-.++..|+.+++.|.++
T Consensus 81 ~Lt~~Re~---V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 81 VLMQSREQ---VSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHH---HHTC--------------
T ss_pred HHHHHHHH---HHHHHHHHHhhccchhhh
Confidence 33332222 122345566666666443
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.73 E-value=1.3e+02 Score=36.54 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred hhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000216 732 KSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL 784 (1849)
Q Consensus 732 Ks~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~l 784 (1849)
...+..||...-...+.+....++|.+++..|+.-+.++...+++.+.+++++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 44456677777777777788888999999999999999999999999998887
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.66 E-value=1.5e+02 Score=29.25 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 000216 793 NEKSCLITERVNLVSQLDIARKGLKDLE 820 (1849)
Q Consensus 793 ~e~s~l~~Ek~~L~sQl~~~~~~l~~le 820 (1849)
..--.+..+++.+..++++++..+..++
T Consensus 63 ~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 63 RQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555555555555554443
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.65 E-value=81 Score=31.89 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHH
Q 000216 794 EKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836 (1849)
Q Consensus 794 e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~E 836 (1849)
-++-|-+||.+|.-||+.+...|..++..++.+...+....++
T Consensus 17 snAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re 59 (103)
T 4h22_A 17 SNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888888888887777766555554444
No 65
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.49 E-value=71 Score=30.93 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000216 744 SQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL 784 (1849)
Q Consensus 744 SQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~l 784 (1849)
++=+.+.++|+.++.+|..||..+.+++..++..+.+-..+
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777777777777776665554444
No 66
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.42 E-value=1.6e+02 Score=28.97 Aligned_cols=82 Identities=30% Similarity=0.308 Sum_probs=46.4
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 000216 704 LSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKS 783 (1849)
Q Consensus 704 LSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~ 783 (1849)
+.++|.-|.+--+||..||..-..|..+...+..-. -+.+ .+....++..+|.++.+
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~--------------------~~~~---~~~ye~~i~~Lr~~i~~ 67 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG--------------------KSRL---GDLYEEEMRELRRQVDQ 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------CCCc---HHHHHHHHHHHHHHHHH
Confidence 557788888888888888877777765554433110 0111 11223445555554443
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHH
Q 000216 784 LEDSCLLLDNEKSCLITERVNLVSQLDIARKG 815 (1849)
Q Consensus 784 lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~ 815 (1849)
+ ..+++.+..+..+|.-.+..+..+
T Consensus 68 ~-------~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 68 L-------TNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 455666666666666666655544
No 67
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.27 E-value=1e+02 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000216 445 AEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 445 sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
.++++.+.+........+|+++|.++..|..++..++.++..|
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777788888888777766665555555543
No 68
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.83 E-value=4e+02 Score=32.34 Aligned_cols=66 Identities=11% Similarity=0.246 Sum_probs=40.2
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~el 442 (1849)
.+...|-..+..+..|....++-.+.+|..+.-|+..|..-=-.+..|+..+.....+|+.||..|
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667777777777777777777777777655322245555555555555555555555
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.98 E-value=5.5e+02 Score=30.86 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=6.0
Q ss_pred chhhhhhhhhHHH
Q 000216 26 SKWLQENLTDMDV 38 (1849)
Q Consensus 26 skwL~~~l~~md~ 38 (1849)
..+++.-+.+.+.
T Consensus 31 ~~~~~~~i~~Fe~ 43 (471)
T 3mq9_A 31 YNGLAEVGKKFEK 43 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh
Confidence 3455554444433
No 70
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.61 E-value=3.8e+02 Score=26.90 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000216 429 QQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 429 qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
..+.+.|..++..++....++.+|..++.....+-..+|..
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~ 48 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEE 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554444444444
No 71
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.48 E-value=1.7e+02 Score=28.22 Aligned_cols=71 Identities=25% Similarity=0.213 Sum_probs=53.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Q 000216 767 LFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1849)
Q Consensus 767 lsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1849)
.+++-.|++.+-..-.+|-+.-.+++--+..|.++...|.++-..++.++..+..-.+.++.|...+..|.
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888888888888888888888888888888888888888888888888888888887776654
No 72
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.89 E-value=4e+02 Score=33.60 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000216 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1849)
Q Consensus 417 L~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~ 461 (1849)
|+.....|...++.-+..|..|+.-|..+-.+++||...|+....
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444544467777777777778888888777765443
No 73
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.27 E-value=63 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=20.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000216 751 ENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1849)
Q Consensus 751 ~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k 782 (1849)
.+..+|..+|+.||+.+|-+..|-..||+.++
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34555566677777777777777666666543
No 74
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.24 E-value=1.1e+02 Score=29.88 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q 000216 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL 597 (1849)
Q Consensus 542 ~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~ 597 (1849)
.|-+||..+.-.+.+|++.+.--+..+...|+|+..|.++=-.-...|+.||+++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 57778888888888888888888888888887777776664444456777776653
No 75
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.44 E-value=1.7e+02 Score=28.32 Aligned_cols=55 Identities=29% Similarity=0.360 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhh
Q 000216 713 GVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSL 767 (1849)
Q Consensus 713 gLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~sl 767 (1849)
.|.+.-.+|.=....|-.....|.+|+++|-..+.++.+...++..++..||..+
T Consensus 20 eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 20 QLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555666667777889999999999999999999999988888765
No 76
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=30.90 E-value=43 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=15.8
Q ss_pred hHHHHHhhhhhHHhHHHHHHHHHHHHHHH
Q 000216 379 ISALEDKLLHSEEDSKRINKVADKAESEV 407 (1849)
Q Consensus 379 IS~LE~kI~~aee~~~~ln~~~e~~e~ev 407 (1849)
||.||+.+..++.-+..+..++++++..+
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 77
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.34 E-value=4.1e+02 Score=26.30 Aligned_cols=81 Identities=25% Similarity=0.173 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhhhhhchhHHHH
Q 000216 760 NNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEK-SYAELEGRYLGLEEEKE 838 (1849)
Q Consensus 760 ns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek-~~~ele~k~~~lq~Eke 838 (1849)
.+-|++||..-+.-.+.+-.+.++|+..+.++..++.+--.....+.+.|+ +.|++++. +.+.++-...-...|++
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid---d~Lk~l~~EklAkldLE~RLsKtEKD 82 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD---ETLKNLELEKLARMELEARLAKTEKD 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcccHHHHHHHHHHHHHhhhhhH
Confidence 344555555555556666666667777777666666555555555554443 33445444 45555555555666666
Q ss_pred HHHHH
Q 000216 839 STLQK 843 (1849)
Q Consensus 839 ~~~~~ 843 (1849)
+++-+
T Consensus 83 kAiLE 87 (101)
T 1d7m_A 83 RAILE 87 (101)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.14 E-value=8e+02 Score=29.57 Aligned_cols=6 Identities=33% Similarity=0.202 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000216 451 RLHSEL 456 (1849)
Q Consensus 451 RL~~Ei 456 (1849)
|+..++
T Consensus 453 ~~~~~~ 458 (487)
T 3oja_A 453 RLKKLN 458 (487)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 333333
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.87 E-value=30 Score=31.50 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhhhHH
Q 000216 1393 IEINQLKEKANALECENGGLKAHLAASIPAV 1423 (1849)
Q Consensus 1393 ~ei~~Lker~~~le~En~~lk~~l~~~~~~i 1423 (1849)
.++..|..+|..|+.+|..|..+++..-.-+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555544333333
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.78 E-value=6.8e+02 Score=30.47 Aligned_cols=41 Identities=7% Similarity=0.197 Sum_probs=23.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 486 SMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAF 526 (1849)
Q Consensus 486 ~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL 526 (1849)
.|.+++..+...+......|..|+..|.+.+.++..-|.++
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444456667777777666666666555
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.50 E-value=3.2e+02 Score=27.53 Aligned_cols=57 Identities=28% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000216 431 CLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 431 ~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
+...-..||..++..+++-+||...-...-.++..++....-|-.+|+.|..+++-.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445566666677777777766655555666666655555555555555555443
No 82
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.46 E-value=1.3e+02 Score=26.87 Aligned_cols=37 Identities=30% Similarity=0.276 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Q 000216 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLE 265 (1849)
Q Consensus 229 seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~sle 265 (1849)
..||.-|+--|.+|+++|..|..+-...+..|....+
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4689999999999999999999988777777754443
No 83
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.39 E-value=2.2e+02 Score=31.56 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000216 393 SKRINKVADKAESEVERLKQALGKLTEE 420 (1849)
Q Consensus 393 ~~~ln~~~e~~e~ev~~Lk~~i~kL~Ee 420 (1849)
...|+.+++....+++.|+.++..++..
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444433
No 84
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.36 E-value=3.2e+02 Score=26.86 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 000216 752 NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDN 793 (1849)
Q Consensus 752 ~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~ 793 (1849)
.++++.++...+...+..+......++.+++.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555666666666666666666666665543
No 85
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.62 E-value=2.7e+02 Score=28.25 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHH
Q 000216 778 RAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLD 852 (1849)
Q Consensus 778 r~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~ 852 (1849)
..|.+..=.+-.-|.|++++|.=+...|--.++-+++.+..+.++|.+.-..+--+.........++..++.+|.
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666667777766666666666666666666666666555555555555555555555555553
No 86
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.60 E-value=89 Score=27.04 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHH
Q 000216 711 LEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLF 743 (1849)
Q Consensus 711 LegLR~K~k~LEesc~~L~~EKs~L~sEk~~Lv 743 (1849)
|..|..++|+|+..-.-|.+..|+|..|..+|=
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 567788899999999999999999999988773
No 87
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.55 E-value=3e+02 Score=28.22 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHH
Q 000216 774 VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLK 817 (1849)
Q Consensus 774 lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~ 817 (1849)
+.-|++++.-...-+.+.+...-.+..||..|.-|+..++....
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566777767766777766666666777777777776665543
No 88
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.41 E-value=4.8e+02 Score=31.90 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=3.3
Q ss_pred HHhHHHHHh
Q 000216 377 RMISALEDK 385 (1849)
Q Consensus 377 e~IS~LE~k 385 (1849)
+.|..||..
T Consensus 91 ~~~~~~e~~ 99 (409)
T 1m1j_C 91 EEIIRYENT 99 (409)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 89
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.03 E-value=4.2e+02 Score=26.71 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000216 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1849)
Q Consensus 397 n~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq 430 (1849)
++.+..++.+++.|..+...|.++++.+..++.+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777777776666554
No 90
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.47 E-value=3e+02 Score=28.38 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000216 407 VERLKQALGKLTEEKEALALQYQ----QCLEAISILEHKLARAEEE 448 (1849)
Q Consensus 407 v~~Lk~~i~kL~Eekeal~l~~q----q~~~kI~~LE~elS~sQeE 448 (1849)
++.|+.+|..|..+++.+....+ ++...|..|+.++.++.-.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433 5567777888887776544
No 91
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.35 E-value=3.5e+02 Score=25.82 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000216 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1849)
Q Consensus 320 lEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eE 364 (1849)
-..|..|++.++....++..+|..+..+..|-.-|.+.+..+.+|
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 345788888888888888888888888888877777777766543
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.54 E-value=3e+02 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 000216 349 IEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLK 411 (1849)
Q Consensus 349 ~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk 411 (1849)
..+..|+.++..+..+.+...+.++ -.|..|...|..++.++.-.......+..+.+.|+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665543333 34455555555555443333333333333333333
No 93
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.52 E-value=6.1e+02 Score=25.99 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhH
Q 000216 1085 HTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDL 1132 (1849)
Q Consensus 1085 ~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L 1132 (1849)
++..+|++-+...+.-|-.=+.++..+++|+..+.....+|...+..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999998888776554
No 94
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.32 E-value=49 Score=29.95 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 000216 1391 NDIEINQLKEKANALECENGGLKAHLAA 1418 (1849)
Q Consensus 1391 ~~~ei~~Lker~~~le~En~~lk~~l~~ 1418 (1849)
+..+++.|..++..|+.+|..|..+++.
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446667777777777777776666543
No 95
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.15 E-value=5.8e+02 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000216 424 LALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 424 l~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
+...+..-..+-...|...+....|+.-|
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.56 E-value=51 Score=30.25 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=21.9
Q ss_pred HhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhhh
Q 000216 1381 CENLEDRSNSNDIEINQLKEKANALECENGGLKAHL 1416 (1849)
Q Consensus 1381 ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~l 1416 (1849)
+..|+.++-....++..|+.+++.|+.|+.-||.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666667777777777766666543
No 97
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.31 E-value=6.2e+02 Score=25.58 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 000216 340 LSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALE 383 (1849)
Q Consensus 340 lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE 383 (1849)
+.++......++..|.+.+..+.. ..-.|..|++.|..|.
T Consensus 6 l~~~~q~l~~~~~~l~~~~~~l~~----~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 6 IVAQLNIYQSQVELIQQQMEAVRA----TISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 333334444444555555554432 2234778888888877
No 98
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.61 E-value=2.5e+02 Score=26.02 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=17.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 000216 1059 FVVLQREFPKLTEINEELRVEVA 1081 (1849)
Q Consensus 1059 ~l~Lq~e~~eLle~n~qL~~~~~ 1081 (1849)
+.+-..+.++|++.|..|..++.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr 44 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELR 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHH
Confidence 45556778888888888877665
No 99
>2ehw_A Hypothetical protein TTHB059; extended alpha-helix, NPPSFA, national project on protein ST and functional analyses; 2.22A {Thermus thermophilus}
Probab=21.22 E-value=1.3e+02 Score=30.89 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=50.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccccCCC
Q 000216 27 KWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPN 106 (1849)
Q Consensus 27 kwL~~~l~~md~kvk~~lkli~ed~dsfa~raemyy~kRpeLi~~vee~yr~yr~Laeryd~~t~el~~~~~~~a~aFP~ 106 (1849)
..|...|.|++.+|-+ |.+. -||+-|-.+ |.+.-++-+.+....+++-..|-..|++.-++||-
T Consensus 55 r~ldaALvdLEe~ia~-------dPe~------~YlRg~Lva---vr~~E~~l~~l~~~~~~~~~dL~e~Hd~lHe~fP~ 118 (120)
T 2ehw_A 55 EALREALLHLEERAAQ-------EPEE------PYWRGLLLA---VEAMEGRLKALRAEAEALYQDLDALHGRLHRLFPR 118 (120)
T ss_dssp HHHHHHHHHHHHHHHH-------CTTC------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhc-------Cccc------hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4677888888888877 5554 588877555 55556788888889999999999999999999994
No 100
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.99 E-value=3.2e+02 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Q 000216 800 TERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1849)
Q Consensus 800 ~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1849)
.....|..++..+...+...-.+|.+|.+=-..|..||
T Consensus 33 ~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 33 DTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444445555555555555555555555555555554
No 101
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.62 E-value=9.2e+02 Score=29.46 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000216 425 ALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 425 ~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
......+++.|..+|..+......+..|..-+.....++..+...
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444556667777777777766666666665555554444444433
No 102
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.10 E-value=97 Score=28.01 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 000216 1380 ACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAA 1418 (1849)
Q Consensus 1380 ~ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~l~~ 1418 (1849)
.+..|+.++.....++..|+..|+.|..|+..|+..|-|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355677777778889999999999999999999987743
Done!