Query 000217
Match_columns 1849
No_of_seqs 151 out of 168
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 23:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 100.0 2.6E-37 5.7E-42 287.2 7.4 74 14-87 1-74 (74)
2 KOG4674 Uncharacterized conser 99.9 2.7E-14 5.9E-19 189.7 135.3 1135 231-1433 74-1365(1822)
3 KOG4674 Uncharacterized conser 99.9 9.5E-14 2.1E-18 184.6 136.1 925 434-1434 385-1550(1822)
4 KOG0161 Myosin class II heavy 99.9 3.6E-14 7.9E-19 191.4 123.0 805 249-1143 882-1725(1930)
5 KOG0161 Myosin class II heavy 99.9 2E-11 4.4E-16 165.6 130.7 590 323-967 910-1542(1930)
6 TIGR00606 rad50 rad50. This fa 99.7 3.2E-08 7E-13 135.3 110.9 280 586-883 470-760 (1311)
7 TIGR02168 SMC_prok_B chromosom 99.7 3E-08 6.5E-13 132.2 96.4 63 764-826 725-787 (1179)
8 TIGR02169 SMC_prok_A chromosom 99.7 9.1E-09 2E-13 137.6 88.2 44 925-974 995-1038(1164)
9 TIGR02168 SMC_prok_B chromosom 99.7 2.8E-08 6E-13 132.6 90.0 52 923-974 1000-1052(1179)
10 TIGR00606 rad50 rad50. This fa 99.7 2.2E-07 4.7E-12 127.4 111.8 239 415-676 415-658 (1311)
11 TIGR02169 SMC_prok_A chromosom 99.6 6.7E-08 1.5E-12 129.4 87.5 53 998-1050 955-1007(1164)
12 PRK02224 chromosome segregatio 99.5 4.5E-08 9.8E-13 128.8 73.1 219 377-611 265-492 (880)
13 COG1196 Smc Chromosome segrega 99.5 2.6E-06 5.6E-11 115.9 90.4 186 591-786 671-856 (1163)
14 PRK02224 chromosome segregatio 99.5 4.1E-08 8.9E-13 129.2 68.3 79 402-480 318-396 (880)
15 PF10174 Cast: RIM-binding pro 99.4 3.2E-06 6.9E-11 109.6 75.5 319 277-603 58-408 (775)
16 COG1196 Smc Chromosome segrega 99.4 1.2E-05 2.6E-10 109.6 93.3 278 351-641 215-493 (1163)
17 PRK03918 chromosome segregatio 99.4 8.9E-06 1.9E-10 107.3 75.4 24 588-611 460-483 (880)
18 PRK03918 chromosome segregatio 99.3 1.1E-05 2.3E-10 106.6 70.3 38 324-361 241-278 (880)
19 PF10174 Cast: RIM-binding pro 99.1 0.0002 4.4E-09 93.4 83.2 516 332-916 36-597 (775)
20 KOG0996 Structural maintenance 99.1 0.0003 6.4E-09 92.5 68.0 149 561-730 860-1012(1293)
21 PF01576 Myosin_tail_1: Myosin 99.1 1.8E-11 4E-16 159.8 0.2 714 407-1203 6-734 (859)
22 PRK01156 chromosome segregatio 98.9 0.0013 2.8E-08 87.8 75.4 46 237-286 166-211 (895)
23 PF05483 SCP-1: Synaptonemal c 98.9 0.00094 2E-08 84.2 81.1 522 232-897 108-659 (786)
24 PF01576 Myosin_tail_1: Myosin 98.9 3E-10 6.4E-15 148.7 -1.3 255 508-772 185-447 (859)
25 KOG4643 Uncharacterized coiled 98.8 0.0002 4.3E-09 92.7 49.1 317 546-902 258-588 (1195)
26 KOG0996 Structural maintenance 98.8 0.0027 5.8E-08 84.0 73.5 163 230-392 288-462 (1293)
27 PRK01156 chromosome segregatio 98.8 0.0041 8.9E-08 83.3 70.2 25 428-452 300-324 (895)
28 KOG0933 Structural maintenance 98.7 0.0044 9.4E-08 81.1 63.6 143 701-843 793-935 (1174)
29 KOG0250 DNA repair protein RAD 98.7 0.005 1.1E-07 81.6 57.8 144 323-466 318-462 (1074)
30 KOG0612 Rho-associated, coiled 98.7 0.0076 1.6E-07 80.3 66.4 180 259-454 469-657 (1317)
31 PF05701 WEMBL: Weak chloropla 98.7 0.0016 3.4E-08 82.7 49.0 132 537-668 287-418 (522)
32 KOG4643 Uncharacterized coiled 98.7 0.0068 1.5E-07 79.2 58.2 410 590-1040 173-626 (1195)
33 PF07888 CALCOCO1: Calcium bin 98.6 0.00035 7.5E-09 87.7 40.3 185 552-757 269-458 (546)
34 KOG0976 Rho/Rac1-interacting s 98.6 0.0036 7.8E-08 79.6 48.2 365 401-790 116-508 (1265)
35 PF12128 DUF3584: Protein of u 98.6 0.018 3.9E-07 79.8 67.8 106 616-723 601-706 (1201)
36 PF15070 GOLGA2L5: Putative go 98.5 0.0023 5E-08 82.4 45.5 203 619-848 283-497 (617)
37 PF07888 CALCOCO1: Calcium bin 98.5 0.0034 7.3E-08 79.2 44.6 278 323-635 173-458 (546)
38 PF05911 DUF869: Plant protein 98.5 0.019 4.2E-07 75.5 60.3 224 286-526 45-309 (769)
39 PF09730 BicD: Microtubule-ass 98.4 0.031 6.8E-07 73.0 61.0 141 665-814 266-412 (717)
40 PF07111 HCR: Alpha helical co 98.4 0.029 6.3E-07 71.9 64.3 159 405-598 242-412 (739)
41 KOG0978 E3 ubiquitin ligase in 98.3 0.037 8E-07 71.8 65.3 70 678-750 265-334 (698)
42 PF05557 MAD: Mitotic checkpoi 98.3 2.5E-06 5.4E-11 110.9 12.1 70 658-727 462-535 (722)
43 PRK04863 mukB cell division pr 98.3 0.085 1.8E-06 74.2 81.2 341 234-580 276-666 (1486)
44 KOG4673 Transcription factor T 98.2 0.055 1.2E-06 68.8 58.2 253 656-931 494-761 (961)
45 KOG0962 DNA repair protein RAD 98.2 0.097 2.1E-06 71.5 89.2 106 315-455 182-290 (1294)
46 KOG0978 E3 ubiquitin ligase in 98.2 0.072 1.6E-06 69.2 62.6 183 625-835 436-622 (698)
47 PF05557 MAD: Mitotic checkpoi 98.2 3.1E-06 6.6E-11 110.1 8.2 33 650-682 336-368 (722)
48 PF12128 DUF3584: Protein of u 98.1 0.14 3E-06 71.4 88.1 134 703-852 582-716 (1201)
49 PF09730 BicD: Microtubule-ass 98.1 0.017 3.6E-07 75.4 40.4 388 396-814 32-468 (717)
50 KOG0933 Structural maintenance 98.1 0.11 2.4E-06 68.8 75.1 174 861-1052 830-1010(1174)
51 PRK04778 septation ring format 98.1 0.093 2E-06 67.7 51.7 325 375-730 77-425 (569)
52 KOG0971 Microtubule-associated 98.1 0.019 4E-07 74.5 38.1 24 1395-1418 1028-1051(1243)
53 PF00261 Tropomyosin: Tropomyo 98.1 0.0016 3.5E-08 74.8 26.7 156 277-439 20-175 (237)
54 PF05483 SCP-1: Synaptonemal c 98.0 0.12 2.5E-06 66.4 82.6 415 435-946 196-645 (786)
55 PF00261 Tropomyosin: Tropomyo 98.0 0.0017 3.8E-08 74.6 25.8 200 228-434 27-226 (237)
56 KOG0977 Nuclear envelope prote 98.0 0.021 4.5E-07 72.4 36.3 329 243-631 41-386 (546)
57 KOG0976 Rho/Rac1-interacting s 98.0 0.15 3.3E-06 65.7 64.0 109 690-798 272-391 (1265)
58 PF05622 HOOK: HOOK protein; 97.9 5.3E-06 1.2E-10 107.8 2.7 146 438-611 170-318 (713)
59 PF05701 WEMBL: Weak chloropla 97.9 0.2 4.4E-06 64.1 57.9 198 433-645 211-416 (522)
60 PRK04863 mukB cell division pr 97.9 0.43 9.4E-06 67.5 84.0 146 539-688 507-662 (1486)
61 PF00038 Filament: Intermediat 97.9 0.016 3.5E-07 68.5 30.9 295 573-910 4-305 (312)
62 COG0419 SbcC ATPase involved i 97.8 0.37 8.1E-06 65.4 73.7 55 206-260 140-194 (908)
63 KOG4593 Mitotic checkpoint pro 97.8 0.32 6.9E-06 62.9 64.7 39 323-361 160-198 (716)
64 PF00038 Filament: Intermediat 97.8 0.11 2.4E-06 61.5 35.6 41 799-839 261-301 (312)
65 KOG0250 DNA repair protein RAD 97.7 0.61 1.3E-05 63.0 67.8 201 261-469 231-437 (1074)
66 KOG0980 Actin-binding protein 97.6 0.39 8.5E-06 63.2 38.9 70 234-306 330-399 (980)
67 PF06160 EzrA: Septation ring 97.5 0.63 1.4E-05 60.2 48.2 381 377-792 75-485 (560)
68 KOG0612 Rho-associated, coiled 97.5 0.91 2E-05 61.8 64.2 51 699-749 718-768 (1317)
69 COG0419 SbcC ATPase involved i 97.5 0.93 2E-05 61.7 76.7 22 901-922 756-777 (908)
70 KOG0971 Microtubule-associated 97.5 0.75 1.6E-05 60.7 43.3 31 242-272 229-259 (1243)
71 KOG0963 Transcription factor/C 97.5 0.5 1.1E-05 60.7 36.9 202 416-635 186-431 (629)
72 PF05622 HOOK: HOOK protein; 97.5 2.6E-05 5.7E-10 101.5 0.0 72 537-611 575-646 (713)
73 KOG0995 Centromere-associated 97.4 0.76 1.7E-05 58.6 40.6 54 657-710 514-568 (581)
74 PRK04778 septation ring format 97.4 1 2.3E-05 58.3 46.8 128 494-646 280-407 (569)
75 PF04849 HAP1_N: HAP1 N-termin 97.2 0.088 1.9E-06 63.0 25.3 165 555-735 55-239 (306)
76 PHA02562 46 endonuclease subun 97.2 0.089 1.9E-06 66.9 26.9 121 320-451 233-355 (562)
77 KOG0999 Microtubule-associated 97.2 1.4 3E-05 55.9 71.3 396 347-820 6-455 (772)
78 KOG0977 Nuclear envelope prote 97.1 0.23 5.1E-06 63.3 28.5 328 552-912 56-387 (546)
79 PF15070 GOLGA2L5: Putative go 97.1 2 4.4E-05 56.4 53.1 87 701-794 420-506 (617)
80 PHA02562 46 endonuclease subun 97.0 0.21 4.5E-06 63.6 27.4 23 231-253 175-197 (562)
81 KOG0994 Extracellular matrix g 96.9 3.3 7.2E-05 56.2 43.5 26 443-468 1507-1532(1758)
82 KOG0963 Transcription factor/C 96.9 2.4 5.2E-05 54.8 34.4 51 561-611 385-435 (629)
83 PF09787 Golgin_A5: Golgin sub 96.8 2.7 6E-05 54.0 34.8 122 405-529 274-397 (511)
84 PF05911 DUF869: Plant protein 96.8 3.8 8.1E-05 55.1 62.8 117 690-813 598-714 (769)
85 KOG0946 ER-Golgi vesicle-tethe 96.8 1.6 3.4E-05 57.6 31.7 139 482-634 792-930 (970)
86 KOG0962 DNA repair protein RAD 96.8 4.9 0.00011 56.0 96.8 248 872-1142 824-1077(1294)
87 KOG4673 Transcription factor T 96.7 3.6 7.9E-05 53.4 59.8 117 516-632 618-749 (961)
88 KOG0946 ER-Golgi vesicle-tethe 96.6 0.95 2.1E-05 59.4 28.1 258 420-709 679-939 (970)
89 PF06160 EzrA: Septation ring 96.6 4.4 9.5E-05 52.8 49.3 165 378-551 162-333 (560)
90 PRK11637 AmiB activator; Provi 96.4 2.2 4.7E-05 53.5 29.8 60 408-467 180-239 (428)
91 KOG0964 Structural maintenance 96.4 6.6 0.00014 53.1 65.8 203 236-452 271-500 (1200)
92 COG5185 HEC1 Protein involved 96.4 4.6 0.0001 50.7 38.5 289 395-734 292-583 (622)
93 PF09726 Macoilin: Transmembra 96.3 0.86 1.9E-05 60.4 26.4 230 410-660 423-678 (697)
94 PF14662 CCDC155: Coiled-coil 96.2 0.87 1.9E-05 51.6 21.8 147 588-751 9-168 (193)
95 KOG0995 Centromere-associated 96.2 6.5 0.00014 50.7 39.6 28 692-719 500-527 (581)
96 COG4372 Uncharacterized protei 95.9 6.2 0.00013 48.7 28.5 185 335-530 88-272 (499)
97 COG1579 Zn-ribbon protein, pos 95.9 1.9 4.2E-05 50.5 23.8 126 329-473 18-143 (239)
98 KOG1003 Actin filament-coating 95.8 4.6 9.9E-05 46.1 26.4 198 291-509 2-199 (205)
99 PRK11637 AmiB activator; Provi 95.8 8 0.00017 48.6 31.2 43 317-359 85-127 (428)
100 PF05667 DUF812: Protein of un 95.8 11 0.00023 49.7 35.2 57 224-280 315-371 (594)
101 PF14662 CCDC155: Coiled-coil 95.7 2.5 5.4E-05 48.1 22.7 183 1003-1199 3-188 (193)
102 KOG0964 Structural maintenance 95.6 14 0.00031 50.1 66.6 39 236-278 173-211 (1200)
103 PF12718 Tropomyosin_1: Tropom 95.6 1.1 2.3E-05 48.8 18.9 127 364-497 8-137 (143)
104 KOG4593 Mitotic checkpoint pro 95.6 13 0.00027 49.2 66.9 87 758-858 447-533 (716)
105 PF09789 DUF2353: Uncharacteri 95.3 9.9 0.00021 46.5 28.9 113 737-851 65-177 (319)
106 COG1579 Zn-ribbon protein, pos 95.3 1.9 4.1E-05 50.6 20.7 151 479-644 35-186 (239)
107 PF15619 Lebercilin: Ciliary p 95.0 2.5 5.4E-05 48.3 20.2 60 588-647 90-150 (194)
108 PF09726 Macoilin: Transmembra 95.0 4.8 0.0001 53.7 25.6 102 702-831 545-653 (697)
109 PF12718 Tropomyosin_1: Tropom 94.8 3.4 7.3E-05 45.1 19.7 57 305-361 5-61 (143)
110 KOG1003 Actin filament-coating 94.7 11 0.00023 43.3 25.0 65 234-298 1-65 (205)
111 KOG0994 Extracellular matrix g 94.6 29 0.00063 48.0 51.0 95 264-362 1200-1294(1758)
112 TIGR02680 conserved hypothetic 94.5 25 0.00055 50.5 32.3 29 583-611 1082-1110(1353)
113 PF08614 ATG16: Autophagy prot 94.4 0.16 3.5E-06 57.1 9.1 117 716-832 67-183 (194)
114 COG4372 Uncharacterized protei 94.4 18 0.0004 44.9 29.2 159 321-486 123-284 (499)
115 PF09728 Taxilin: Myosin-like 94.3 17 0.00037 44.4 35.4 118 388-512 171-295 (309)
116 PF13851 GAS: Growth-arrest sp 94.2 2.8 6.1E-05 48.0 18.3 77 648-724 91-172 (201)
117 PF15619 Lebercilin: Ciliary p 94.2 13 0.00029 42.6 25.1 50 412-461 61-110 (194)
118 PF07111 HCR: Alpha helical co 94.1 29 0.00063 46.1 58.1 167 559-737 242-415 (739)
119 KOG1029 Endocytic adaptor prot 94.1 30 0.00065 46.2 35.0 135 590-756 440-575 (1118)
120 PF10473 CENP-F_leu_zip: Leuci 93.8 5.8 0.00013 43.4 18.8 17 396-412 22-38 (140)
121 PLN02939 transferase, transfer 93.7 26 0.00056 48.5 28.4 107 657-774 226-347 (977)
122 PF10473 CENP-F_leu_zip: Leuci 93.7 8.4 0.00018 42.2 19.7 61 395-455 56-116 (140)
123 PLN02939 transferase, transfer 93.3 25 0.00054 48.7 27.3 77 651-734 294-376 (977)
124 PF09755 DUF2046: Uncharacteri 93.2 27 0.00058 42.7 33.7 173 240-430 23-203 (310)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.1 8.1 0.00018 41.4 18.4 129 328-487 3-131 (132)
126 PF13851 GAS: Growth-arrest sp 93.0 19 0.00041 41.4 22.4 119 660-785 51-170 (201)
127 PF04849 HAP1_N: HAP1 N-termin 92.9 29 0.00063 42.4 26.7 141 427-581 161-305 (306)
128 PRK11281 hypothetical protein; 92.8 61 0.0013 45.9 35.4 31 333-363 78-108 (1113)
129 PF08317 Spc7: Spc7 kinetochor 92.3 34 0.00074 41.9 25.6 50 763-812 214-263 (325)
130 PF14915 CCDC144C: CCDC144C pr 92.2 34 0.00074 41.6 35.0 220 666-899 1-246 (305)
131 PF09787 Golgin_A5: Golgin sub 92.2 47 0.001 43.1 31.0 26 670-695 405-430 (511)
132 PRK09039 hypothetical protein; 92.1 9.7 0.00021 46.9 19.8 59 433-491 123-181 (343)
133 PRK09039 hypothetical protein; 92.1 15 0.00033 45.3 21.4 33 433-465 116-148 (343)
134 PF08317 Spc7: Spc7 kinetochor 91.4 34 0.00073 41.9 23.2 42 358-399 130-171 (325)
135 PF13514 AAA_27: AAA domain 91.3 86 0.0019 44.5 87.4 86 496-581 410-495 (1111)
136 KOG0018 Structural maintenance 91.2 81 0.0018 44.0 72.0 119 411-529 380-500 (1141)
137 PF09789 DUF2353: Uncharacteri 91.2 46 0.00099 41.1 32.4 249 391-646 9-317 (319)
138 TIGR03185 DNA_S_dndD DNA sulfu 91.1 68 0.0015 42.8 37.3 51 561-611 393-445 (650)
139 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.8 21 0.00047 38.2 18.4 87 398-487 17-110 (132)
140 PF05667 DUF812: Protein of un 90.6 72 0.0016 42.4 34.5 98 265-362 321-421 (594)
141 KOG0999 Microtubule-associated 90.3 69 0.0015 41.7 61.9 178 692-892 40-219 (772)
142 KOG1853 LIS1-interacting prote 90.1 40 0.00087 40.1 20.7 50 347-399 64-113 (333)
143 PF09755 DUF2046: Uncharacteri 89.5 61 0.0013 39.8 32.1 173 261-469 23-200 (310)
144 KOG0804 Cytoplasmic Zn-finger 89.3 7.2 0.00016 49.0 15.0 100 772-878 347-446 (493)
145 PF00769 ERM: Ezrin/radixin/mo 89.2 15 0.00032 43.5 17.1 112 291-416 3-114 (246)
146 PF14915 CCDC144C: CCDC144C pr 89.0 64 0.0014 39.4 36.8 106 410-515 89-205 (305)
147 COG1340 Uncharacterized archae 88.8 66 0.0014 39.3 33.8 58 408-465 30-87 (294)
148 COG1340 Uncharacterized archae 88.8 66 0.0014 39.3 32.4 40 430-469 135-180 (294)
149 PF15066 CAGE1: Cancer-associa 88.8 83 0.0018 40.4 26.0 104 408-511 365-468 (527)
150 KOG0243 Kinesin-like protein [ 88.2 1.3E+02 0.0029 42.1 57.2 78 435-512 436-513 (1041)
151 PF15254 CCDC14: Coiled-coil d 87.9 24 0.00053 47.1 18.9 188 1154-1419 370-562 (861)
152 TIGR03007 pepcterm_ChnLen poly 87.6 60 0.0013 41.5 22.3 29 330-358 163-191 (498)
153 COG4477 EzrA Negative regulato 87.4 1.1E+02 0.0023 40.1 49.5 75 637-712 455-530 (570)
154 PF00769 ERM: Ezrin/radixin/mo 87.4 26 0.00057 41.5 17.5 128 402-529 2-129 (246)
155 PF04156 IncA: IncA protein; 87.4 25 0.00055 39.3 16.8 29 335-363 81-109 (191)
156 PF10267 Tmemb_cc2: Predicted 87.3 93 0.002 39.5 23.0 66 233-308 215-291 (395)
157 PF15066 CAGE1: Cancer-associa 87.3 1E+02 0.0022 39.7 25.2 82 372-454 379-467 (527)
158 PF05010 TACC: Transforming ac 87.1 67 0.0015 37.5 25.0 143 725-873 64-206 (207)
159 PF06008 Laminin_I: Laminin Do 86.8 75 0.0016 37.7 29.5 66 516-584 152-220 (264)
160 PF08614 ATG16: Autophagy prot 86.5 3.2 7E-05 46.9 9.3 110 1004-1120 70-179 (194)
161 PF09728 Taxilin: Myosin-like 86.2 94 0.002 38.2 40.8 48 588-635 252-299 (309)
162 TIGR00634 recN DNA repair prot 86.1 1.2E+02 0.0026 39.9 24.2 37 533-569 320-356 (563)
163 PF12325 TMF_TATA_bd: TATA ele 85.8 18 0.0004 38.7 13.8 100 1028-1138 15-114 (120)
164 TIGR00634 recN DNA repair prot 85.4 73 0.0016 41.8 21.8 31 256-286 159-189 (563)
165 KOG4302 Microtubule-associated 84.6 1.6E+02 0.0036 39.6 31.7 308 777-1137 52-384 (660)
166 PF04111 APG6: Autophagy prote 84.4 16 0.00035 44.6 14.4 56 397-452 77-132 (314)
167 PF14073 Cep57_CLD: Centrosome 84.2 85 0.0018 36.0 19.1 118 797-967 54-171 (178)
168 PF15397 DUF4618: Domain of un 84.1 1.1E+02 0.0023 37.0 29.3 18 368-385 43-60 (258)
169 PF10481 CENP-F_N: Cenp-F N-te 84.0 28 0.0006 41.8 15.2 153 518-684 19-189 (307)
170 TIGR03185 DNA_S_dndD DNA sulfu 83.8 1.7E+02 0.0037 39.2 35.8 43 261-303 205-247 (650)
171 PRK10869 recombination and rep 83.0 1.7E+02 0.0037 38.6 25.0 45 528-572 310-354 (553)
172 PF15397 DUF4618: Domain of un 82.1 1.3E+02 0.0027 36.5 29.1 49 404-452 5-53 (258)
173 PRK15422 septal ring assembly 82.1 9.6 0.00021 38.1 9.0 63 584-646 15-77 (79)
174 smart00787 Spc7 Spc7 kinetocho 81.8 1.2E+02 0.0026 37.4 20.2 11 537-547 270-280 (312)
175 PF04111 APG6: Autophagy prote 81.8 18 0.0004 44.1 13.5 24 353-380 13-36 (314)
176 smart00787 Spc7 Spc7 kinetocho 81.5 62 0.0013 39.8 17.6 50 721-770 142-191 (312)
177 KOG4807 F-actin binding protei 81.2 1.6E+02 0.0035 37.1 24.2 36 19-54 26-61 (593)
178 KOG0804 Cytoplasmic Zn-finger 81.0 35 0.00076 43.4 15.3 83 709-791 347-429 (493)
179 COG4942 Membrane-bound metallo 80.6 1.8E+02 0.0039 37.3 29.8 33 323-355 75-107 (420)
180 PF12325 TMF_TATA_bd: TATA ele 80.4 59 0.0013 35.0 14.9 46 472-517 72-117 (120)
181 PF13166 AAA_13: AAA domain 80.4 2.2E+02 0.0048 38.1 24.5 35 378-412 364-398 (712)
182 KOG3850 Predicted membrane pro 80.1 80 0.0017 39.6 17.6 90 233-332 263-371 (455)
183 PF09738 DUF2051: Double stran 80.1 32 0.00069 42.1 14.5 152 588-753 78-242 (302)
184 COG3883 Uncharacterized protei 79.9 1.5E+02 0.0033 35.9 24.3 115 678-806 98-217 (265)
185 KOG0243 Kinesin-like protein [ 79.8 2.9E+02 0.0062 39.1 48.0 141 705-845 407-549 (1041)
186 PRK10929 putative mechanosensi 79.2 3.2E+02 0.0069 39.3 36.7 53 400-452 182-234 (1109)
187 PF15254 CCDC14: Coiled-coil d 78.8 27 0.00058 46.8 14.0 126 1178-1325 429-559 (861)
188 KOG1899 LAR transmembrane tyro 78.7 88 0.0019 41.3 18.0 135 735-879 116-250 (861)
189 KOG4360 Uncharacterized coiled 78.4 2.1E+02 0.0047 37.3 20.9 182 941-1134 94-296 (596)
190 COG4942 Membrane-bound metallo 78.3 2.1E+02 0.0046 36.8 27.2 39 427-465 151-189 (420)
191 TIGR01005 eps_transp_fam exopo 78.3 1.8E+02 0.0039 39.4 22.2 32 492-523 372-403 (754)
192 COG1842 PspA Phage shock prote 78.2 1.3E+02 0.0028 35.6 18.1 50 338-387 27-76 (225)
193 PF05010 TACC: Transforming ac 78.1 1.5E+02 0.0032 34.8 25.8 107 398-511 69-197 (207)
194 KOG2129 Uncharacterized conser 77.4 2.2E+02 0.0047 36.4 22.5 66 366-431 149-227 (552)
195 PF15294 Leu_zip: Leucine zipp 76.9 86 0.0019 38.1 16.5 93 762-854 129-223 (278)
196 KOG1029 Endocytic adaptor prot 76.5 3E+02 0.0066 37.6 35.4 23 492-514 552-574 (1118)
197 KOG0239 Kinesin (KAR3 subfamil 76.3 1.1E+02 0.0023 41.5 18.7 76 427-502 221-296 (670)
198 KOG1899 LAR transmembrane tyro 76.3 1.5E+02 0.0032 39.5 18.9 82 409-497 108-196 (861)
199 KOG4360 Uncharacterized coiled 76.1 88 0.0019 40.6 16.8 127 236-390 172-302 (596)
200 KOG0982 Centrosomal protein Nu 75.4 2.5E+02 0.0054 36.1 29.0 159 417-582 248-426 (502)
201 PLN03229 acetyl-coenzyme A car 75.0 3.3E+02 0.0072 37.3 25.3 38 410-447 460-500 (762)
202 PF12777 MT: Microtubule-bindi 74.2 2.3E+02 0.005 35.1 22.3 66 404-469 220-285 (344)
203 KOG0018 Structural maintenance 74.1 4E+02 0.0086 37.8 70.3 227 733-973 655-899 (1141)
204 COG0497 RecN ATPase involved i 73.4 2E+02 0.0043 38.3 19.5 56 517-572 297-355 (557)
205 COG3074 Uncharacterized protei 73.1 24 0.00052 34.6 8.6 62 584-645 15-76 (79)
206 PF10212 TTKRSYEDQ: Predicted 72.4 1.5E+02 0.0033 38.8 18.0 55 414-468 297-351 (518)
207 PF06008 Laminin_I: Laminin Do 72.0 2.2E+02 0.0047 33.9 31.6 60 451-514 182-241 (264)
208 PF10146 zf-C4H2: Zinc finger- 72.0 67 0.0014 38.0 13.8 101 497-611 5-106 (230)
209 PF04912 Dynamitin: Dynamitin 71.6 2.8E+02 0.0061 35.0 26.8 52 226-277 90-144 (388)
210 PF04012 PspA_IM30: PspA/IM30 69.3 2.2E+02 0.0047 32.8 19.9 53 313-365 90-142 (221)
211 PRK10929 putative mechanosensi 69.1 5.3E+02 0.012 37.2 41.8 50 605-654 269-318 (1109)
212 KOG0980 Actin-binding protein 68.8 4.7E+02 0.01 36.5 36.4 157 347-507 384-540 (980)
213 PF10481 CENP-F_N: Cenp-F N-te 68.4 2.9E+02 0.0062 33.8 17.8 113 402-514 15-127 (307)
214 PF04012 PspA_IM30: PspA/IM30 67.3 2.4E+02 0.0052 32.5 18.7 50 338-387 26-75 (221)
215 PRK10698 phage shock protein P 66.7 2.7E+02 0.0058 32.8 22.0 82 267-357 54-135 (222)
216 PF15294 Leu_zip: Leucine zipp 66.0 3.2E+02 0.007 33.5 28.1 42 588-629 133-174 (278)
217 COG2433 Uncharacterized conser 65.9 1.9E+02 0.0041 38.6 16.9 22 311-332 349-370 (652)
218 TIGR01005 eps_transp_fam exopo 65.8 3.8E+02 0.0083 36.5 20.9 19 588-606 377-395 (754)
219 KOG1853 LIS1-interacting prote 65.4 3.1E+02 0.0067 33.1 21.1 55 585-643 131-185 (333)
220 TIGR01843 type_I_hlyD type I s 65.0 3.4E+02 0.0074 33.5 21.5 16 348-363 80-95 (423)
221 PF14992 TMCO5: TMCO5 family 63.0 2.3E+02 0.0049 34.8 15.9 39 414-452 13-51 (280)
222 KOG4787 Uncharacterized conser 62.9 5E+02 0.011 34.7 19.6 137 304-465 445-581 (852)
223 PF06818 Fez1: Fez1; InterPro 62.6 3.1E+02 0.0068 32.2 20.5 154 405-568 31-200 (202)
224 KOG4302 Microtubule-associated 62.3 5.5E+02 0.012 35.0 33.2 252 351-605 23-308 (660)
225 KOG4438 Centromere-associated 62.2 4.5E+02 0.0098 33.9 39.9 179 308-487 139-332 (446)
226 KOG0249 LAR-interacting protei 61.7 2.2E+02 0.0048 38.5 16.4 19 430-448 67-85 (916)
227 PRK10246 exonuclease subunit S 61.6 6.8E+02 0.015 35.8 76.6 42 238-280 224-265 (1047)
228 PF11559 ADIP: Afadin- and alp 61.4 2.5E+02 0.0054 30.7 16.8 95 408-512 55-149 (151)
229 PF05266 DUF724: Protein of un 61.3 1.1E+02 0.0024 35.2 12.6 56 377-432 131-186 (190)
230 PF10168 Nup88: Nuclear pore c 61.3 6E+02 0.013 35.0 22.1 57 417-473 563-619 (717)
231 KOG1962 B-cell receptor-associ 61.1 44 0.00095 39.2 9.4 72 753-838 139-210 (216)
232 KOG0993 Rab5 GTPase effector R 60.8 4.6E+02 0.01 33.6 37.0 86 658-748 435-521 (542)
233 PF13870 DUF4201: Domain of un 60.6 2.8E+02 0.0062 31.1 20.6 30 485-514 45-74 (177)
234 PF13870 DUF4201: Domain of un 60.4 2.9E+02 0.0062 31.0 19.8 57 590-646 45-101 (177)
235 PF06005 DUF904: Protein of un 60.2 83 0.0018 31.1 9.8 15 372-386 13-27 (72)
236 PF04645 DUF603: Protein of un 59.9 1.4E+02 0.003 34.1 12.5 92 287-380 69-170 (181)
237 PF07200 Mod_r: Modifier of ru 59.5 2.4E+02 0.0052 30.7 14.3 130 710-848 8-137 (150)
238 PF11932 DUF3450: Protein of u 59.4 3.6E+02 0.0079 31.9 16.9 61 409-469 39-99 (251)
239 COG3883 Uncharacterized protei 59.2 4.1E+02 0.0089 32.5 25.7 35 323-357 40-74 (265)
240 PF10146 zf-C4H2: Zinc finger- 59.2 1.8E+02 0.0039 34.6 14.1 55 404-458 31-85 (230)
241 PF09738 DUF2051: Double stran 58.7 91 0.002 38.3 12.0 55 776-830 81-135 (302)
242 TIGR02449 conserved hypothetic 58.6 27 0.00059 34.0 6.1 61 1370-1437 5-65 (65)
243 KOG2991 Splicing regulator [RN 58.6 4.1E+02 0.0089 32.3 26.9 19 225-243 68-86 (330)
244 KOG0239 Kinesin (KAR3 subfamil 58.2 2.5E+02 0.0053 38.3 16.7 116 730-856 175-290 (670)
245 PF14992 TMCO5: TMCO5 family 57.8 2.7E+02 0.0058 34.2 15.3 36 460-495 115-150 (280)
246 COG5185 HEC1 Protein involved 57.8 5.6E+02 0.012 33.5 33.8 42 939-980 553-595 (622)
247 KOG0249 LAR-interacting protei 57.6 6.7E+02 0.015 34.4 23.3 238 214-487 12-256 (916)
248 PRK10869 recombination and rep 57.6 6E+02 0.013 33.8 22.8 24 448-471 283-306 (553)
249 PF14988 DUF4515: Domain of un 57.6 3.7E+02 0.0081 31.5 25.0 47 588-645 62-108 (206)
250 PF04582 Reo_sigmaC: Reovirus 56.1 20 0.00044 44.0 6.0 47 378-424 57-103 (326)
251 PF10498 IFT57: Intra-flagella 55.9 4.2E+02 0.0091 33.5 17.2 48 422-469 216-263 (359)
252 PRK15422 septal ring assembly 55.5 1.1E+02 0.0023 31.1 9.6 60 1089-1148 15-74 (79)
253 PF09304 Cortex-I_coil: Cortex 55.1 2.2E+02 0.0048 30.4 12.3 63 714-776 14-76 (107)
254 KOG1937 Uncharacterized conser 54.3 6.2E+02 0.013 33.0 33.0 206 246-464 243-486 (521)
255 PF09304 Cortex-I_coil: Cortex 54.1 1.2E+02 0.0027 32.2 10.3 41 797-837 34-74 (107)
256 PF06005 DUF904: Protein of un 53.6 1.5E+02 0.0032 29.5 10.3 59 420-492 5-63 (72)
257 PF06818 Fez1: Fez1; InterPro 52.9 4.5E+02 0.0097 31.0 17.9 39 323-361 68-106 (202)
258 KOG1937 Uncharacterized conser 52.5 6.6E+02 0.014 32.8 29.8 189 1027-1235 323-519 (521)
259 KOG0982 Centrosomal protein Nu 51.8 6.6E+02 0.014 32.6 30.7 38 268-305 218-255 (502)
260 COG4026 Uncharacterized protei 51.8 74 0.0016 37.4 9.1 82 703-791 129-210 (290)
261 COG1842 PspA Phage shock prote 51.4 4.9E+02 0.011 31.0 20.4 43 232-274 33-75 (225)
262 PRK11281 hypothetical protein; 51.4 1E+03 0.022 34.6 43.3 49 403-451 204-252 (1113)
263 PF10498 IFT57: Intra-flagella 51.2 5.3E+02 0.012 32.7 17.1 83 409-492 270-352 (359)
264 PLN03188 kinesin-12 family pro 50.8 1.1E+03 0.023 34.7 32.0 161 1069-1276 1063-1241(1320)
265 PF12795 MscS_porin: Mechanose 50.6 4.8E+02 0.01 30.7 21.4 33 332-364 35-67 (240)
266 PRK10884 SH3 domain-containing 50.5 1.7E+02 0.0038 34.1 12.0 75 226-303 89-163 (206)
267 PRK10698 phage shock protein P 50.5 4.9E+02 0.011 30.7 24.1 45 368-412 90-134 (222)
268 COG4026 Uncharacterized protei 50.3 1.1E+02 0.0023 36.2 10.0 74 400-473 137-210 (290)
269 PF10168 Nup88: Nuclear pore c 50.2 8.7E+02 0.019 33.5 21.5 20 448-467 566-585 (717)
270 PF04582 Reo_sigmaC: Reovirus 49.3 22 0.00049 43.7 4.9 124 693-830 33-156 (326)
271 PRK10884 SH3 domain-containing 48.9 2E+02 0.0044 33.6 12.2 17 399-415 94-110 (206)
272 PF15369 KIAA1328: Uncharacter 48.7 1.6E+02 0.0035 36.5 11.8 80 349-452 8-87 (328)
273 PF07227 DUF1423: Protein of u 48.5 1.7E+02 0.0036 37.8 12.2 40 377-416 350-389 (446)
274 PF13166 AAA_13: AAA domain 47.9 8.5E+02 0.019 32.8 24.4 35 425-459 437-471 (712)
275 PLN03229 acetyl-coenzyme A car 47.1 9.7E+02 0.021 33.2 19.8 18 236-253 125-142 (762)
276 PF08826 DMPK_coil: DMPK coile 46.0 1.2E+02 0.0026 29.4 8.1 43 445-487 16-58 (61)
277 PF14197 Cep57_CLD_2: Centroso 45.8 1.1E+02 0.0023 30.2 7.9 59 708-766 4-62 (69)
278 PF11932 DUF3450: Protein of u 45.5 1.7E+02 0.0038 34.5 11.3 85 707-791 19-103 (251)
279 PF14073 Cep57_CLD: Centrosome 44.9 5.5E+02 0.012 29.8 20.9 31 314-344 4-34 (178)
280 PF15233 SYCE1: Synaptonemal c 44.3 4.8E+02 0.01 28.9 15.3 125 588-744 7-133 (134)
281 KOG4460 Nuclear pore complex, 44.3 9.3E+02 0.02 32.2 20.4 134 320-469 601-738 (741)
282 PF15035 Rootletin: Ciliary ro 44.1 3.6E+02 0.0079 31.0 13.1 74 455-528 61-134 (182)
283 PF05266 DUF724: Protein of un 44.0 4.3E+02 0.0093 30.7 13.7 85 435-519 98-182 (190)
284 TIGR03017 EpsF chain length de 44.0 7.8E+02 0.017 31.2 22.4 32 328-359 171-202 (444)
285 PF10046 BLOC1_2: Biogenesis o 43.9 3.1E+02 0.0068 28.4 11.5 35 374-408 63-97 (99)
286 PF03999 MAP65_ASE1: Microtubu 43.0 73 0.0016 42.4 8.6 193 808-1016 201-410 (619)
287 PF12795 MscS_porin: Mechanose 42.8 6.3E+02 0.014 29.8 22.8 58 396-453 155-212 (240)
288 PF10267 Tmemb_cc2: Predicted 42.6 4.6E+02 0.0099 33.7 14.7 48 502-559 243-290 (395)
289 TIGR01010 BexC_CtrB_KpsE polys 42.4 4.5E+02 0.0098 32.5 14.7 135 767-904 172-308 (362)
290 PF07106 TBPIP: Tat binding pr 42.3 2.4E+02 0.0053 31.4 11.2 95 710-823 73-168 (169)
291 PF10186 Atg14: UV radiation r 42.1 6.5E+02 0.014 29.7 19.3 6 619-624 256-261 (302)
292 PF04880 NUDE_C: NUDE protein, 41.7 35 0.00076 38.5 4.6 47 588-638 1-47 (166)
293 PF08647 BRE1: BRE1 E3 ubiquit 41.1 1.9E+02 0.0042 29.8 9.4 59 592-650 1-59 (96)
294 KOG0288 WD40 repeat protein Ti 41.1 8.8E+02 0.019 31.4 16.4 81 281-361 8-88 (459)
295 PF00170 bZIP_1: bZIP transcri 40.8 40 0.00087 31.8 4.2 39 1391-1429 24-62 (64)
296 PRK09841 cryptic autophosphory 40.2 7.1E+02 0.015 34.1 17.1 11 237-247 209-219 (726)
297 PLN03188 kinesin-12 family pro 39.6 1.5E+03 0.033 33.3 35.0 78 889-969 1097-1191(1320)
298 PF06785 UPF0242: Uncharacteri 39.0 9.1E+02 0.02 30.6 18.5 64 378-441 121-184 (401)
299 KOG0993 Rab5 GTPase effector R 38.8 9.9E+02 0.021 30.9 41.4 41 323-363 136-176 (542)
300 KOG0979 Structural maintenance 38.8 1.4E+03 0.031 32.7 60.6 550 278-851 149-907 (1072)
301 KOG2077 JNK/SAPK-associated pr 38.7 73 0.0016 41.6 7.1 66 720-785 319-384 (832)
302 PRK09841 cryptic autophosphory 38.6 7.1E+02 0.015 34.1 16.7 78 755-832 257-336 (726)
303 KOG1962 B-cell receptor-associ 38.3 2.8E+02 0.0062 32.8 11.2 50 438-487 149-198 (216)
304 PF10212 TTKRSYEDQ: Predicted 38.2 1.1E+03 0.024 31.4 22.4 28 310-337 305-332 (518)
305 KOG4809 Rab6 GTPase-interactin 38.1 1.1E+03 0.025 31.5 34.9 126 552-692 331-456 (654)
306 PF09766 FimP: Fms-interacting 37.6 2E+02 0.0043 36.1 10.6 128 1307-1434 3-149 (355)
307 KOG0240 Kinesin (SMY1 subfamil 37.5 1.2E+03 0.026 31.5 25.3 61 522-582 454-514 (607)
308 PRK03947 prefoldin subunit alp 37.4 5.6E+02 0.012 27.7 13.3 44 337-384 8-51 (140)
309 PRK11519 tyrosine kinase; Prov 37.2 7.9E+02 0.017 33.7 16.8 76 757-832 259-336 (719)
310 PRK11519 tyrosine kinase; Prov 36.7 1.1E+03 0.023 32.4 18.0 12 237-248 209-220 (719)
311 COG4477 EzrA Negative regulato 36.4 1.2E+03 0.026 31.2 47.1 145 588-754 348-512 (570)
312 KOG4603 TBP-1 interacting prot 36.2 6.5E+02 0.014 29.1 13.0 62 535-608 76-137 (201)
313 PF10226 DUF2216: Uncharacteri 36.1 7.8E+02 0.017 28.9 14.7 110 1006-1133 21-142 (195)
314 PF06785 UPF0242: Uncharacteri 35.6 1E+03 0.022 30.1 21.2 58 499-558 197-261 (401)
315 COG2433 Uncharacterized conser 35.6 2.6E+02 0.0057 37.3 11.3 89 1186-1292 418-506 (652)
316 KOG4403 Cell surface glycoprot 35.5 6.3E+02 0.014 32.7 14.0 62 657-720 259-320 (575)
317 PF12777 MT: Microtubule-bindi 35.0 9.9E+02 0.021 29.8 23.9 18 656-673 297-314 (344)
318 PF06705 SF-assemblin: SF-asse 34.9 8.3E+02 0.018 28.9 33.2 63 501-572 126-188 (247)
319 PF03962 Mnd1: Mnd1 family; I 33.8 6.6E+02 0.014 29.0 13.2 77 318-399 80-157 (188)
320 PF13514 AAA_27: AAA domain 33.4 1.7E+03 0.037 32.1 84.0 67 213-284 134-200 (1111)
321 KOG3478 Prefoldin subunit 6, K 33.4 6.1E+02 0.013 27.5 11.5 43 748-790 73-115 (120)
322 PF07106 TBPIP: Tat binding pr 33.3 2.5E+02 0.0053 31.3 9.5 65 535-611 69-133 (169)
323 PF14197 Cep57_CLD_2: Centroso 32.4 2.8E+02 0.0061 27.4 8.5 30 444-473 23-52 (69)
324 cd00632 Prefoldin_beta Prefold 32.3 1.7E+02 0.0038 30.2 7.6 73 1336-1417 29-101 (105)
325 PF03999 MAP65_ASE1: Microtubu 32.1 53 0.0011 43.7 4.8 144 321-469 207-352 (619)
326 PHA00276 phage lambda Rz-like 31.3 2.2E+02 0.0048 31.8 8.4 49 81-140 67-115 (144)
327 COG3074 Uncharacterized protei 30.7 5.7E+02 0.012 25.7 10.3 59 422-487 7-65 (79)
328 KOG2264 Exostosin EXT1L [Signa 30.0 2.1E+02 0.0045 37.7 9.0 44 471-514 96-139 (907)
329 PF07058 Myosin_HC-like: Myosi 29.5 6.9E+02 0.015 31.2 12.7 158 554-727 2-161 (351)
330 TIGR01010 BexC_CtrB_KpsE polys 29.2 5.6E+02 0.012 31.7 12.6 87 705-791 173-261 (362)
331 PF07889 DUF1664: Protein of u 29.2 8.1E+02 0.017 27.0 12.4 74 398-474 50-123 (126)
332 PF15450 DUF4631: Domain of un 28.9 1.5E+03 0.033 30.2 51.8 55 410-464 18-72 (531)
333 PRK15178 Vi polysaccharide exp 28.8 1.4E+03 0.029 30.0 15.9 65 327-396 241-305 (434)
334 PF08172 CASP_C: CASP C termin 28.4 6.9E+02 0.015 30.2 12.6 53 588-640 80-132 (248)
335 PF05384 DegS: Sensor protein 28.3 9.3E+02 0.02 27.4 22.3 107 241-368 3-110 (159)
336 COG5509 Uncharacterized small 28.1 46 0.001 31.9 2.4 25 1395-1419 27-51 (65)
337 PF05529 Bap31: B-cell recepto 27.7 3.2E+02 0.0069 31.0 9.4 31 317-347 114-144 (192)
338 KOG4438 Centromere-associated 27.4 1.5E+03 0.033 29.6 37.5 103 365-467 140-250 (446)
339 KOG4001 Axonemal dynein light 26.7 3.6E+02 0.0079 31.7 9.3 78 1235-1318 174-251 (259)
340 TIGR03752 conj_TIGR03752 integ 26.6 3.4E+02 0.0074 35.5 10.1 99 535-647 42-141 (472)
341 PF12709 Kinetocho_Slk19: Cent 26.5 2.6E+02 0.0056 29.0 7.4 57 1155-1211 23-84 (87)
342 PF04102 SlyX: SlyX; InterPro 26.2 1.8E+02 0.0038 28.4 6.0 41 377-417 4-44 (69)
343 TIGR01000 bacteriocin_acc bact 25.6 1.5E+03 0.033 29.1 23.2 29 248-276 94-122 (457)
344 PF06156 DUF972: Protein of un 25.3 3.5E+02 0.0076 28.8 8.4 45 396-440 13-57 (107)
345 PF04880 NUDE_C: NUDE protein, 25.3 78 0.0017 35.9 4.0 46 746-795 2-47 (166)
346 PF06705 SF-assemblin: SF-asse 25.3 1.2E+03 0.026 27.7 31.1 19 345-363 30-48 (247)
347 PF05276 SH3BP5: SH3 domain-bi 25.2 1.3E+03 0.028 28.0 26.9 153 223-385 7-164 (239)
348 KOG0992 Uncharacterized conser 25.1 1.8E+03 0.038 29.6 47.9 71 530-604 269-339 (613)
349 PF07798 DUF1640: Protein of u 25.1 1E+03 0.023 26.9 15.4 24 693-716 129-152 (177)
350 PF05377 FlaC_arch: Flagella a 25.0 1.6E+02 0.0035 28.1 5.2 40 378-417 1-40 (55)
351 PF02403 Seryl_tRNA_N: Seryl-t 24.5 5E+02 0.011 26.7 9.4 72 381-452 26-100 (108)
352 PF06548 Kinesin-related: Kine 24.2 1.8E+03 0.038 29.2 24.3 83 888-973 326-425 (488)
353 smart00338 BRLZ basic region l 24.1 1E+02 0.0022 29.2 3.9 38 1391-1428 24-61 (65)
354 PF04102 SlyX: SlyX; InterPro 23.9 3.5E+02 0.0077 26.4 7.6 40 428-467 13-52 (69)
355 KOG4687 Uncharacterized coiled 23.8 1.4E+03 0.031 28.1 19.0 87 653-742 86-193 (389)
356 PF02994 Transposase_22: L1 tr 23.7 1.8E+02 0.004 36.6 7.2 48 422-469 140-187 (370)
357 KOG0288 WD40 repeat protein Ti 23.6 1.7E+03 0.038 29.0 16.3 58 400-457 15-72 (459)
358 PF15369 KIAA1328: Uncharacter 23.6 4E+02 0.0086 33.3 9.5 65 295-383 10-74 (328)
359 KOG1655 Protein involved in va 23.5 1.3E+03 0.028 27.4 13.8 157 542-728 16-184 (218)
360 KOG4807 F-actin binding protei 23.4 1.7E+03 0.037 28.8 27.2 75 241-329 191-270 (593)
361 PF07227 DUF1423: Protein of u 23.2 1.2E+03 0.026 30.6 13.8 52 309-360 336-389 (446)
362 KOG2129 Uncharacterized conser 23.2 1.8E+03 0.038 28.9 23.4 26 237-262 99-125 (552)
363 TIGR03017 EpsF chain length de 23.1 1.6E+03 0.035 28.4 23.6 23 352-374 257-279 (444)
364 PF04871 Uso1_p115_C: Uso1 / p 22.8 1E+03 0.023 26.2 12.8 108 539-652 2-114 (136)
365 TIGR02977 phageshock_pspA phag 22.8 1.3E+03 0.027 27.1 22.7 50 338-387 27-76 (219)
366 PF03962 Mnd1: Mnd1 family; I 22.3 9.7E+02 0.021 27.7 11.9 65 696-761 63-127 (188)
367 PF07989 Microtub_assoc: Micro 22.3 4.2E+02 0.0091 26.6 7.8 67 908-974 6-73 (75)
368 PF12329 TMF_DNA_bd: TATA elem 22.3 1.8E+02 0.0038 28.9 5.3 60 1372-1431 12-71 (74)
369 PRK04406 hypothetical protein; 22.2 4.4E+02 0.0096 26.4 8.0 35 432-466 24-58 (75)
370 PRK00295 hypothetical protein; 21.8 3.3E+02 0.0072 26.7 6.9 48 377-424 5-52 (68)
371 PF11559 ADIP: Afadin- and alp 21.5 1.1E+03 0.023 25.8 17.8 32 483-514 95-126 (151)
372 PF15035 Rootletin: Ciliary ro 21.4 1.3E+03 0.028 26.7 18.3 70 400-469 62-131 (182)
373 PF05278 PEARLI-4: Arabidopsis 21.3 1.6E+03 0.035 27.7 13.8 83 702-785 159-241 (269)
374 PF06632 XRCC4: DNA double-str 21.2 1.1E+03 0.025 29.7 13.0 77 372-455 132-216 (342)
375 PRK02793 phi X174 lysis protei 21.2 3.4E+02 0.0073 26.9 6.9 39 377-415 8-46 (72)
376 KOG4809 Rab6 GTPase-interactin 21.0 2.1E+03 0.047 29.1 38.0 263 448-751 339-619 (654)
377 PF08172 CASP_C: CASP C termin 21.0 9.7E+02 0.021 29.0 12.0 38 424-461 84-121 (248)
378 PF09763 Sec3_C: Exocyst compl 20.6 2E+03 0.043 29.8 16.2 60 428-487 25-84 (701)
379 PRK02119 hypothetical protein; 20.5 3.5E+02 0.0076 26.9 6.9 48 377-424 9-56 (73)
380 PF09766 FimP: Fms-interacting 20.5 1.8E+03 0.039 28.0 16.8 39 405-443 12-50 (355)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=100.00 E-value=2.6e-37 Score=287.15 Aligned_cols=74 Identities=85% Similarity=1.444 Sum_probs=73.5
Q ss_pred ccccccCCCCCCchhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhh
Q 000217 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87 (1849)
Q Consensus 14 sww~~sHi~~~~skwL~~~l~~md~kvk~~lkli~ed~dsfa~raemyy~kRpeLi~~vee~yr~yr~Laeryd 87 (1849)
||||+|||+|++||||++||+|||.|||.||++|++||||||+||||||++||+||++|+||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.94 E-value=2.7e-14 Score=189.69 Aligned_cols=1135 Identities=20% Similarity=0.212 Sum_probs=549.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHH
Q 000217 231 RMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETERE 310 (1849)
Q Consensus 231 R~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~eke 310 (1849)
-+..+..|+..|...+..+.+++..........-.-.+.|=..-+..|+.-..|.+-......++..+.....
T Consensus 74 q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~------- 146 (1822)
T KOG4674|consen 74 QAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENK------- 146 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3557777777777777777776655444443333333333222233332222222222223333333333333
Q ss_pred HhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HhHHHHHhh
Q 000217 311 ANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSR----MISALEDKL 386 (1849)
Q Consensus 311 a~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe----~IS~LE~kI 386 (1849)
..-.|+++.-.+++.++..+...+...-...-+-.+.+.+...|-++..-+..+--...=.|.-.-. -++.|++++
T Consensus 147 ~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L 226 (1822)
T KOG4674|consen 147 DLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKL 226 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3333455555666666666665555444444444555555555555555554444333322222222 256666666
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHH
Q 000217 387 LHSEEDSKRINKVADKAESEVERLKQALGK-------LTEEKEALALQYQQCLE---AISI-LEHKLARAEEEAQRLHSE 455 (1849)
Q Consensus 387 ~~aee~~~~ln~~~e~~e~ev~~Lk~~i~k-------L~Eekeal~l~~qq~~~---kI~~-LE~elS~sQeEv~RL~~E 455 (1849)
..+..+...+....+-+......|.+.|.. +..--......|..-+. +|.. +....+....+++-|...
T Consensus 227 ~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~ 306 (1822)
T KOG4674|consen 227 SDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRA 306 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555444444444444443332 22222222222221111 1111 122222334444445555
Q ss_pred HHhhhhhhhhHHHHHHHH----HHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHH
Q 000217 456 LDNGFAKLKGAEEKCLLL----ERSNQTLHSELESMVQKMGSQSQELTEKQKELGR-LWTCIQEE----RLRFVEAETAF 526 (1849)
Q Consensus 456 ie~~~~kLk~lE~~~~~L----E~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~-L~~siqeE----~~k~~EaE~aL 526 (1849)
|......|.+++.+|-.. ....+.+......+..++..+..+|......+.. +-.++-.+ ..+++-....|
T Consensus 307 i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sL 386 (1822)
T KOG4674|consen 307 IEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSL 386 (1822)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhH
Confidence 666666666666554432 2233333344444444444444444444333333 11111111 23444444555
Q ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHH---HHHHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 000217 527 QTLQHLHSQSQDELRSLAAELQNRAQILKDM----GTRNQSLQE---EVEKVKEENKGLNELNLSSAESIKNLQDEILSL 599 (1849)
Q Consensus 527 ~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~l----E~~~~~L~~---ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~L 599 (1849)
-.+-+-+...|+++..+..++......|... .....-|++ ++.++.+.+..++...-.+.--|.+++.++..|
T Consensus 387 tk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l 466 (1822)
T KOG4674|consen 387 TKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESL 466 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556677888888888887666544333 222222322 334445555555555555556777888888888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch-----------hhhHHHHHHHhhh
Q 000217 600 RETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF-----------GLSVKELQDENSK 668 (1849)
Q Consensus 600 KE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~-----------~~~vkeLQ~~n~~ 668 (1849)
+-....+.+|+..-.-.-.+|++.+.++..+++.+..-+-....+.+ +.+++- =..|.+||+.|..
T Consensus 467 ~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~---~~~es~S~~iIse~Lv~F~nI~eLqekN~e 543 (1822)
T KOG4674|consen 467 KKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDS---TENESDSEEIISERLVEFSNINELQEKNVE 543 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc---cccCccHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88888888877766666777788887777777777665544444333 223321 1568999999999
Q ss_pred hHHHHHHhHHHHHHHHHH--------HHH-HHHHHHHHHHHhhhhhhhhhhh-------HhHH-----------------
Q 000217 669 LKEVYERDRCEKVALLEK--------LEI-MEKLLEKNAVLENSLSDLNVEL-------EGVR----------------- 715 (1849)
Q Consensus 669 Lke~~s~~~~EK~~L~~k--------Lq~-mekLlEkns~LE~SLSd~n~EL-------egLR----------------- 715 (1849)
|...+..+.+...+---. ++. ..+..++.+-|++.+-+...-+ +-+|
T Consensus 544 LL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss 623 (1822)
T KOG4674|consen 544 LLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSS 623 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCch
Confidence 998777776543332211 111 2334444444443333322221 2221
Q ss_pred ------------HHHHHHHHHHHHHHHh-----------hhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHH
Q 000217 716 ------------DKVKALEEVCQNLLAE-----------KSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANA 772 (1849)
Q Consensus 716 ------------~K~k~LEesc~~L~~E-----------Ks~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ 772 (1849)
..+.+|+.-...++.+ ...|..|..++=+++....-....-.+++..|++.+-..++
T Consensus 624 ~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~ 703 (1822)
T KOG4674|consen 624 ALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE 703 (1822)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333222 23455555555566666555555666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH---
Q 000217 773 EVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF--- 849 (1849)
Q Consensus 773 ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~--- 849 (1849)
|++.|+..-+.|........+....+..++..--+.+..+...+.+|+.+..-+-.--..|..|.++++.....++.
T Consensus 704 e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~ 783 (1822)
T KOG4674|consen 704 EVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLD 783 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666666666666666666666666666665555444444455555555554444332
Q ss_pred ----hHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHh---hhhhhH
Q 000217 850 ----SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKE---KNFSLL 922 (1849)
Q Consensus 850 ----sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~---kN~~ll 922 (1849)
+...-..-..+-...=+.+|-+|+..+..|.. -++.|..|+.+ .|-..+
T Consensus 784 ~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~------------------------klq~~~~~~r~l~~~~~~~l 839 (1822)
T KOG4674|consen 784 NLQTQKNELEESEMATKDKCESRIKELERELQKLKK------------------------KLQEKSSDLRELTNSLEKQL 839 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhhhhHH
Confidence 22222222222222222333333333332222 24444444442 222223
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcccCCCcchhhhhhhhHH
Q 000217 923 FECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEI--------LEIDADHGCETKMEQDQSHQT 994 (1849)
Q Consensus 923 ~EcQk~~eas~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~--------L~i~~~~~~~d~~~~e~~~~~ 994 (1849)
.+.| ..|.+++.++.....++..+...|.+|...+..+-+. ++.+..--.+|....+.
T Consensus 840 ~~~~----------~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~---- 905 (1822)
T KOG4674|consen 840 ENAQ----------NLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILED---- 905 (1822)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhH----
Confidence 3333 3333444444444444444444444444444433333 23332211223222233
Q ss_pred HHHHHHhHHHHHHHHHHHhHhhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000217 995 LLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINE 1074 (1849)
Q Consensus 995 ~l~~i~~~~~~l~~s~~~~q~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~ 1074 (1849)
.|.....++.+++..+-.+.-...+.-....+.-..|.+...+....+ ..++..++........|..+..+|..-+.
T Consensus 906 ~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~ 982 (1822)
T KOG4674|consen 906 TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEELSELEKEIE 982 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777778777777777777777766666667777766666655444 34445555555556666666565555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHH---------------------HhhhHH
Q 000217 1075 ELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMK---------------------KVLDLQ 1133 (1849)
Q Consensus 1075 qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~---------------------~~~~L~ 1133 (1849)
+|+.+..--. ..+-.+...+.++++-++..+..+..-++.+...-..+.. ...++.
T Consensus 983 ~l~~e~~~~~---k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~ 1059 (1822)
T KOG4674|consen 983 NLREELELST---KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLT 1059 (1822)
T ss_pred HHHHHHhccc---cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554442111 1122234444444444444444444333333222222222 222223
Q ss_pred HhhhhhhhhhhhHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhHhhhhccchhHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 000217 1134 EEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSL 1213 (1849)
Q Consensus 1134 e~~~~lE~en~~~l~E~i~~snLs~~~~~~~~Ek~~~l~~L~e~l~~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~~l 1213 (1849)
.++..+..++..+-.|...|. ......--.+.+..+........|.++|....++..+++..|.-|..-|
T Consensus 1060 q~l~kl~ee~~~~~~e~~~Lk----------~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qi 1129 (1822)
T KOG4674|consen 1060 QKLIKLREEFAKCNDELLKLK----------KSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQF 1129 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------hhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333222222110 0000001112222223344455678888888899999999998888888
Q ss_pred HHhHHHHHH-hhhhhhhhhHHHHhhhhhhhhhhHHHHHH-----HHHHHhhhHhhHHHHHHHhhhhhhhhhhHHHH----
Q 000217 1214 EKSENELVA-IGCVRDQLNCEIANGKDLLSRKEKELFVA-----EQILCSLQNERTELHMKVEDLTCKYDEAKIIQ---- 1283 (1849)
Q Consensus 1214 e~l~~~l~e-~~si~~~L~~qi~~~~~~l~qk~~ellea-----e~~~~~~~~~~~El~~~ve~Lk~~~~ea~~i~---- 1283 (1849)
+.+..-... ..|....=..++.+.--.| +++.+++.. ..-...+......+|++|.+|.-.....++-.
T Consensus 1130 e~~s~~~~~~n~S~~~~g~sdL~~iv~~L-R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a 1208 (1822)
T KOG4674|consen 1130 EELSQQSAVSNLSAMLLGLSDLQNIVSFL-RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSA 1208 (1822)
T ss_pred HHHhhhhhhccccccccchHHHHHHHHHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 777665432 1111110011222211111 122222222 22223455666778888888887776655543
Q ss_pred ------hhhhhhHHHhh---hhhhhhhhhHHhHHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhHhhhHHHHH
Q 000217 1284 ------EDQGKQIRKLT---EDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQAT 1354 (1849)
Q Consensus 1284 ------e~~ekqi~~Ls---~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~~l~E~e~~ 1354 (1849)
.++=+++..+. +.+..=++|....-+-++.|+..+.+|+.++-.+...=..|..+++...++....+.++.
T Consensus 1209 ~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~ 1288 (1822)
T KOG4674|consen 1209 VSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEND 1288 (1822)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222 333333444444444444455555555555555555444455555555444444443333
Q ss_pred HHHhhhhH-HHHHHHHHhhhhHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHHHHHHH
Q 000217 1355 ELFSELQI-SSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSL 1433 (1849)
Q Consensus 1355 ~l~~dlq~-ssv~~~L~eekv~El~~~ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d~v~sL 1433 (1849)
..-.--|- ..-..-.-.+-...|...|.+|+..-..+...|..++.+++-+. ...+-+|.+...-+..|.+.|..|
T Consensus 1289 ~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql 1365 (1822)
T KOG4674|consen 1289 RWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQL 1365 (1822)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110000 00000011123455666777777766665555555555555544 333344444444444444444443
No 3
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.94 E-value=9.5e-14 Score=184.64 Aligned_cols=925 Identities=20% Similarity=0.220 Sum_probs=479.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 434 AISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQ 513 (1849)
Q Consensus 434 kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siq 513 (1849)
.+..+-+.+.+.|.++.-+..|++.....|...-.......-.+..-.++++-....++...+++....+++.++..-++
T Consensus 385 sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~ 464 (1822)
T KOG4674|consen 385 SLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELE 464 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888766666555555666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH--------------------------------------------
Q 000217 514 EERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQN-------------------------------------------- 549 (1849)
Q Consensus 514 eE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~-------------------------------------------- 549 (1849)
.-...+.--+..+..+...++-.+.++..|-.++..
T Consensus 465 ~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eL 544 (1822)
T KOG4674|consen 465 SLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVEL 544 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 766666666666666666677777777666644421
Q ss_pred ---------------------------------------HHHHHHHHhhhhHHHHHHHHHHHHHhhccccc-----ccch
Q 000217 550 ---------------------------------------RAQILKDMGTRNQSLQEEVEKVKEENKGLNEL-----NLSS 585 (1849)
Q Consensus 550 ---------------------------------------~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~-----n~SS 585 (1849)
....+.++++++..|..+....++-.-.+-+- |.++
T Consensus 545 L~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~ 624 (1822)
T KOG4674|consen 545 LNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSA 624 (1822)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchh
Confidence 11124455566666766666665333222111 1110
Q ss_pred ----------HHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000217 586 ----------AESIKNL-------------------------QDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEE 630 (1849)
Q Consensus 586 ----------~~sIk~L-------------------------QdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee 630 (1849)
...+++| +.+...++....++..+..+..+.=+.|+..|-..|.+
T Consensus 625 ~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e 704 (1822)
T KOG4674|consen 625 LDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEE 704 (1822)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133333 44444444444455555555556666777777777777
Q ss_pred HHHHHHHHH--------------HHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-------
Q 000217 631 LNELNKKHQ--------------AMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI------- 689 (1849)
Q Consensus 631 ~~~Ln~k~~--------------~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~------- 689 (1849)
+..|..++. .+..+|...+...+.+-.-|..|..++-.|+.....+..|...|....+.
T Consensus 705 ~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~ 784 (1822)
T KOG4674|consen 705 VETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDN 784 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665553 34444554555555555666666666666666666666666666554442
Q ss_pred H---------------HHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH------------------HHHHhhhHhH
Q 000217 690 M---------------EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQ------------------NLLAEKSTLV 736 (1849)
Q Consensus 690 m---------------ekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~------------------~L~~EKs~L~ 736 (1849)
| .++-.++--|++.|+.++.++..=...++.|..... ++..+.+...
T Consensus 785 lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~ 864 (1822)
T KOG4674|consen 785 LQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVS 864 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 123334555666666666665554444443333222 2222223333
Q ss_pred hhHHHHHhhhHHHHHHH--------------------------HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000217 737 AEKNSLFSQLQDVNENL--------------------------KKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLL 790 (1849)
Q Consensus 737 sEk~~LvSQLq~~~~~l--------------------------~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~ 790 (1849)
.+.+.|..++..+...+ ...+++.+.|...|.++..++......+...+.++..
T Consensus 865 ~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~ 944 (1822)
T KOG4674|consen 865 TNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLES 944 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333322 2333344444444444444444444444444444443
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHH-------HHHHHHHHHHHHhHHHHHHHhHhhhh
Q 000217 791 LDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK-------ESTLQKVEELQFSLDAEKQQHASFVQ 863 (1849)
Q Consensus 791 l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek-------e~~~~~veel~~sL~~e~qeh~~~~~ 863 (1849)
.+..+..+ +..+...|.....++..++.+..+|..+...+..+. +..+.++-.-..++.-+.+.+.....
T Consensus 945 ~ks~lde~---~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 945 VKSELDET---RLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAAS 1021 (1822)
T ss_pred HHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333222 244455555555555555555555555555555444 23333333444444445444444444
Q ss_pred chHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHH
Q 000217 864 LSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLE 943 (1849)
Q Consensus 864 ~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe 943 (1849)
=..+.+..+-+.+-..-+..+--...|+.++ |.---+-..|.++..-++....|..++-......+-.+++++
T Consensus 1022 ~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el-------~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~ 1094 (1822)
T KOG4674|consen 1022 QANEQIEDLQNDLKTETEQLRKAQSKYESEL-------VQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQE 1094 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcc
Confidence 4444444444433333333333344444443 233344556677777777777777776666556666666665
Q ss_pred hhh----hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhcc--cCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhH
Q 000217 944 NEN----CEQQEEMRSLVDQIKVLRVQLY---QLLEILEIDA--DHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKAL 1014 (1849)
Q Consensus 944 ~E~----~~~q~e~~~Ll~~i~~Lr~gi~---qvl~~L~i~~--~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q 1014 (1849)
... ..+..++..+-.+|..|...-. -.+..+--.. ..++.+...... |+-+|..|.+..+-+-.-+..++
T Consensus 1095 ~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sd-L~~iv~~LR~Ekei~~tk~~~lk 1173 (1822)
T KOG4674|consen 1095 RDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSD-LQNIVSFLRKEKEIAETKLDTLK 1173 (1822)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHH-HHHHHHHHHhHHHHHhhhHHHHH
Confidence 333 3344455555555555544332 2222222221 134444333222 45677777777676666666666
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHH---HHHHHHHh---hhhhHHHHHHHHHHHHHHhhhhhHH
Q 000217 1015 EQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQ---SEQFVVLQ---REFPKLTEINEELRVEVAERNHTEE 1088 (1849)
Q Consensus 1015 ~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~~~~---s~q~l~Lq---~e~~eLle~n~qL~~~~~~~~~~ee 1088 (1849)
-+|-.+--..+.+-..+..| ..--+..+..++.- ..++--+. ..+.-|.+-|..||.+......+-.
T Consensus 1174 ~e~~~L~qq~~~~~k~i~dL-------~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~q 1246 (1822)
T KOG4674|consen 1174 RENARLKQQVASLNRTIDDL-------QRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQ 1246 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66666444444444444444 33334444443111 11222222 3344556888888888888888888
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhH-------hhhHHHHHhhhHHHhhhhhhhhhhhHHHHhhhcccchhhhh
Q 000217 1089 VLKTEMRSLHMLLSELQGAQQSLQDQNCKVLD-------EKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFK 1161 (1849)
Q Consensus 1089 ~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~-------e~~sL~~~~~~L~e~~~~lE~en~~~l~E~i~~snLs~~~~ 1161 (1849)
.|..++..+...+..|+...-.++.++..... ++.--...+++|.+.|...+-..+.
T Consensus 1247 El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~---------------- 1310 (1822)
T KOG4674|consen 1247 ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE---------------- 1310 (1822)
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH----------------
Confidence 88777777777777776666666666555544 4444455777777776555444222
Q ss_pred hhhHHHHHHHHHHHHhHhhhhccchhHHHHHHHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHHhhhhhh
Q 000217 1162 DVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLL 1241 (1849)
Q Consensus 1162 ~~~~Ek~~~l~~L~e~l~~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~~~~~~l 1241 (1849)
.+ ..++..|.+.+......+.+|..++..+. +.+...-.+++.....+.+.+...+.+...|........
T Consensus 1311 kL----~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~--- 1380 (1822)
T KOG4674|consen 1311 KL----KSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKN--- 1380 (1822)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 11 11445555555555555555555544443 223333334444444444444555555444443333322
Q ss_pred hhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHHHHhhhhhhHHH------hhhhhhhhhhhHHhHHHhhHHHH
Q 000217 1242 SRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRK------LTEDYDCQIKETRCIHELNMKLE 1315 (1849)
Q Consensus 1242 ~qk~~elleae~~~~~~~~~~~El~~~ve~Lk~~~~ea~~i~e~~ekqi~~------Ls~~~~~q~~Ei~~l~e~N~~Le 1315 (1849)
..+-+|..+-....-+.++.-++.-+ |+..+..-.+++.-.+.-=.+++
T Consensus 1381 -------------------------~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~ 1435 (1822)
T KOG4674|consen 1381 -------------------------AQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQ 1435 (1822)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhh
Confidence 22222222222222222222222222 23333333444444444445566
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHhhhhHhhhHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHhhhhhhcccchhhH
Q 000217 1316 AELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHELSRACENLEDRSNSNDIEI 1395 (1849)
Q Consensus 1316 ~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~~l~E~e~~~l~~dlq~ssv~~~L~eekv~El~~~ce~le~~~~~~~~ei 1395 (1849)
+++.....|+-+.+-+++. +--++...++...........-|..--+ .=+++--.++..+-+.+..+......++
T Consensus 1436 s~~e~i~~e~~~~~k~~~~--~~~e~~~~~i~~~~e~~~~~~~~~~~~~---~~le~~k~e~~~e~e~~~~~~~~~~~E~ 1510 (1822)
T KOG4674|consen 1436 SETEAITKELFEAKKEEEK--STTERLLEEIKKLLETVRKKTVDADSKS---ENLEGTKKELESEKEELKQRLTELAAEN 1510 (1822)
T ss_pred hhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6666666666655555555 2333333333333333333333322222 1233334455555555666666666666
Q ss_pred HHHHHHHHh---hhhhhhhhhhhhhhhhhHHHhhHHHHHHHH
Q 000217 1396 NQLKEKANA---LECENGGLKAHLAASIPAVISLKDSIRSLE 1434 (1849)
Q Consensus 1396 ~~Lker~~~---le~En~~lk~~l~~~~~~i~sL~d~v~sLE 1434 (1849)
-.+..|++. |+.++++++.+|...+-.- |.+.+.++|
T Consensus 1511 lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~--l~E~~~~~e 1550 (1822)
T KOG4674|consen 1511 LKLRSRLAKEEQYQKEISRLKEELESTKEAK--LEENTESSE 1550 (1822)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHH--HHhccchhc
Confidence 666666554 3455666666666555554 444444444
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.93 E-value=3.6e-14 Score=191.39 Aligned_cols=805 Identities=23% Similarity=0.245 Sum_probs=421.6
Q ss_pred HHhHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhhccchhH-------hhHHHHHHHHHHHHHHHHH-------HHHHH
Q 000217 249 LEAEKEAGLLQ---YRQSLERLSNLESEVSHAREDSKGLSEQ-------ASIAEAEVQTLKEALARLE-------TEREA 311 (1849)
Q Consensus 249 LqtEKE~~~lq---Y~~slek~~~LE~eis~aQ~~~~~L~er-------a~~ae~E~~sLk~~la~L~-------~ekea 311 (1849)
|++|+++..-. +..-..+-..+|.++.++...+....++ +.+++.+++.++..+..++ .++..
T Consensus 882 l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~ 961 (1930)
T KOG0161|consen 882 LQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA 961 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654432 3333455556666666666666655543 3355666666666665443 33333
Q ss_pred hHHH-------HHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000217 312 NIRQ-------YQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1849)
Q Consensus 312 ~llQ-------ykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~ 384 (1849)
.--+ ..+|-+.+++|-+.-...++-.+.+...+...+.+++.|...++++++.-+.....+.+=-....++|.
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek 1041 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK 1041 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 334555666665555555555666667777788888888888888888877777766665566666776
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000217 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1849)
Q Consensus 385 kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk 464 (1849)
....++.+..-+.+.+..+......|...+.+...+...+..++.....-+..++..+.+.+..+.-|..+++.......
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667776666666666677777888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHH
Q 000217 465 GAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLA 544 (1849)
Q Consensus 465 ~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~ 544 (1849)
.+|.....|..++..|..+++...+...++..--.-.-.|+..|+..++++...+ |..+..+...|+.+-.++..
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~---e~~~~~lr~~~~~~~~el~~-- 1196 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH---EAQIEELRKKHADSLAELQE-- 1196 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH--
Confidence 8888888888888888888888766655544433444677888888887754333 44445554555444333333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000217 545 AELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEI 624 (1849)
Q Consensus 545 ~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel 624 (1849)
-+......-..++..+.+|+.++..+..++..+..........-+.+...++.+...+..+..=+..-...+..++.++
T Consensus 1197 -qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1197 -QLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3333333333455666667777666666666555444443334444444444444444443331111111122222222
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000217 625 YCLKEEL-------NELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1849)
Q Consensus 625 ~~lkee~-------~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1849)
..+...+ ..+++...++..++..+ +..+.+=--....|-..+.....|++.|.+++.+-.. -.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~-------k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e---~~ 1345 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL-------KRQLEEETREKSALENALRQLEHELDLLREQLEEEQE---AK 1345 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 1111111 12222222333333222 2222222222344444455555555666555554322 23
Q ss_pred HHHhhhhhhhhhhhHhHHHHHHHHHHH-HHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 000217 698 AVLENSLSDLNVELEGVRDKVKALEEV-CQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776 (1849)
Q Consensus 698 s~LE~SLSd~n~ELegLR~K~k~LEes-c~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~ 776 (1849)
..|+.-+|.+|+++..-|.|...+-.. ..-+.+.|.-+...=..+=.+++....++..|++-...|...+.|+..+++.
T Consensus 1346 ~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~ 1425 (1930)
T KOG0161|consen 1346 NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLER 1425 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566778888888888888877766555 3335555554444444444455555555555555555555555555555544
Q ss_pred HHH-------HHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Q 000217 777 LRA-------KSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1849)
Q Consensus 777 lr~-------K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~ 849 (1849)
.+. |.+.++..+..++.....+..++..-.-........+..+...+.++.+. +.++...+.
T Consensus 1426 ~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~-----------~e~l~renk 1494 (1930)
T KOG0161|consen 1426 SRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQ-----------LEELRRENK 1494 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 433 33333333444444444444444443333333333333344444333332 223333334
Q ss_pred hHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 000217 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLL 929 (1849)
Q Consensus 850 sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~ 929 (1849)
.+..++.+......--...+.+||+....+..+..-+...+++-.+. ++..+++.+-+..+.+++-
T Consensus 1495 ~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~--------------le~eE~~~lr~~~~~~~~r 1560 (1930)
T KOG0161|consen 1495 NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA--------------LEAEEDKKLRLQLELQQLR 1560 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhhHHHHHHHHHHHHH
Confidence 44444444443333333444444444444433333333222222211 2233333333333332221
Q ss_pred HhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHH
Q 000217 930 QESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQIS 1009 (1849)
Q Consensus 930 eas~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~L~i~~~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s 1009 (1849)
-. .+..+..--+.++..|.+....+..++-..+ ++-....+- + ..-.++.+.|.+|.-+
T Consensus 1561 ~e-----------------~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le--~E~r~k~e~-~-r~KKkle~di~elE~~ 1619 (1930)
T KOG0161|consen 1561 SE-----------------IERRLQEKDEEIEELRKNLQRQLESLQAELE--AETRSKSEA-L-RSKKKLEGDINELEIQ 1619 (1930)
T ss_pred HH-----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHH-H-hhhhhhhcchHHHHHH
Confidence 11 0112222234455555555555554444222 111111111 1 1112455666666666
Q ss_pred HHHhHhhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHH
Q 000217 1010 VLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEV 1089 (1849)
Q Consensus 1010 ~~~~q~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~ 1089 (1849)
++.+-..+....-..+.+...+..|+.++.+....+..+. ..+-....|-..
T Consensus 1620 ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~----------------------------~q~~~aerr~~~ 1671 (1930)
T KOG0161|consen 1620 LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELL----------------------------EQLAEAERRLAA 1671 (1930)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 6666666666444444455555555555544443333333 333333333334
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhhh
Q 000217 1090 LKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEEN 1143 (1849)
Q Consensus 1090 lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~en 1143 (1849)
+.+|++.|...+..+-.+.+.+..|...+.+....+......+...+.-+|.+.
T Consensus 1672 l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i 1725 (1930)
T KOG0161|consen 1672 LQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEI 1725 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 444555555555555555555555544444444444444444444444444443
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.90 E-value=2e-11 Score=165.55 Aligned_cols=590 Identities=21% Similarity=0.250 Sum_probs=292.4
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHH---
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKV--- 399 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~--- 399 (1849)
+..+..++...++....+.....+++.++..++..+..++....-+...|..--..|..|+.+|...++...+++..
T Consensus 910 l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~ 989 (1930)
T KOG0161|consen 910 LKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKE 989 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555554433333333333333355555555555555444444433
Q ss_pred -----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000217 400 -----------ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468 (1849)
Q Consensus 400 -----------~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~ 468 (1849)
+...+.++..|.+.+.+++...+.+...+.+-......+|.......-+..-+...+.........+..
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344444455555555555555555444333333333333322222222222223333333334444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 000217 469 KCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQ 548 (1849)
Q Consensus 469 ~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~ 548 (1849)
.....+.+...+++.++.....++...+.+.+.+..|..|...+..+...+..++.+...|.. ++..|..++.
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~-------ele~l~~~Le 1142 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE-------ELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 444455667777777777777777777777777778888888888888888888888887633 3333333332
Q ss_pred HH-----------HHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000217 549 NR-----------AQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617 (1849)
Q Consensus 549 ~~-----------~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek 617 (1849)
.. ...-.++..-+.+|+.+...+...+..+...+ ..++..|.+.+..++..+.+++. +|
T Consensus 1143 e~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~---~~~~~el~~qle~l~~~k~~lek-------ek 1212 (1930)
T KOG0161|consen 1143 EQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKH---ADSLAELQEQLEQLQKDKAKLEK-------EK 1212 (1930)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 21 11112333445566666666655555555443 44788888888888888888777 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHH-------HHHhHHHHHHHHHHHHHH
Q 000217 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEV-------YERDRCEKVALLEKLEIM 690 (1849)
Q Consensus 618 ~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~-------~s~~~~EK~~L~~kLq~m 690 (1849)
..||.++..+..++..+...-.....-. ..+...+.+||..+..+... ++....|-.-|..+|.+.
T Consensus 1213 ~~lq~e~~~l~~ev~~~~~~k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~ 1285 (1930)
T KOG0161|consen 1213 SDLQREIADLAAELEQLSSEKKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEA 1285 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHH
Confidence 4666666555555543332111111100 11123444455554444443 222333333333333332
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 000217 691 EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDA 770 (1849)
Q Consensus 691 ekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~ 770 (1849)
+. +.+-+-+..+.+..+|+.++..+-+=--.-..|......+..|...|-.|++ .=.+-...|...++++
T Consensus 1286 e~---~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le-------ee~e~~~~l~r~lsk~ 1355 (1930)
T KOG0161|consen 1286 EA---KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE-------EEQEAKNELERKLSKA 1355 (1930)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 22 1122223333333333333333322222222333333333344444434433 3355566788888999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHH---HHHHHH
Q 000217 771 NAEVEGLRAKSKSLEDSC-LLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKEST---LQKVEE 846 (1849)
Q Consensus 771 ~~ElE~lr~K~k~lEes~-~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~---~~~vee 846 (1849)
+++....+.|....-..+ ..+...+-.+......+..+++......-.|++-...+.....++..+.+.+ ...+++
T Consensus 1356 ~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~ 1435 (1930)
T KOG0161|consen 1356 NAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK 1435 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888876663 3333333333444444444444444444444444444444444444444333 222222
Q ss_pred HHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH-------HHHHHHhhhh
Q 000217 847 LQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQK-------YIQDLKEKNF 919 (1849)
Q Consensus 847 l~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk-------~i~Dle~kN~ 919 (1849)
++.+. +..+++.-...--+. .++....+..-+...++|-+.+ -+..+...|=
T Consensus 1436 k~k~f--------------~k~l~e~k~~~e~l~-------~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk 1494 (1930)
T KOG0161|consen 1436 KQKRF--------------EKLLAEWKKKLEKLQ-------AELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENK 1494 (1930)
T ss_pred HHHHH--------------HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 112222211111111 1122222222222333333333 4445556666
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 920 SLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQL 967 (1849)
Q Consensus 920 ~ll~EcQk~~eas~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi 967 (1849)
.+..++..+...-.=..+-+.+|+...+-.++++.-|...+.-+..+.
T Consensus 1495 ~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1495 NLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777666666555677777777777777777777777776666653
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.2e-08 Score=135.26 Aligned_cols=280 Identities=17% Similarity=0.230 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch---hhhHHHH
Q 000217 586 AESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF---GLSVKEL 662 (1849)
Q Consensus 586 ~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~---~~~vkeL 662 (1849)
...+..+..++..+.......... .....+..+|.....++..|..+...+..++..++-..+.. ...-+++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1311)
T TIGR00606 470 SDRILELDQELRKAERELSKAEKN-----SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666665554443331 22444555555555555555555555555554332221111 1222333
Q ss_pred HHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHH
Q 000217 663 QDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSL 742 (1849)
Q Consensus 663 Q~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~L 742 (1849)
......|....+.+...=..++. .+ ..+..+...+..+..++..++.++..++..+..+....+.+..+...+
T Consensus 545 ~~k~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~ 617 (1311)
T TIGR00606 545 MDKDEQIRKIKSRHSDELTSLLG------YF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK 617 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333211111110 00 011334444555555555555556666666666666666666666666
Q ss_pred HhhhHHHHHHHHh------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHhHHHHHH
Q 000217 743 FSQLQDVNENLKK------LSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL--DNEKSCLITERVNLVSQLDIARK 814 (1849)
Q Consensus 743 vSQLq~~~~~l~~------L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l--~~e~s~l~~Ek~~L~sQl~~~~~ 814 (1849)
-.+|+.....+.+ ..+-...++..|..+..++..+..-..-...+.... ..+++|.+..+.- ....
T Consensus 618 ~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f------~~ee 691 (1311)
T TIGR00606 618 EEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVF------QTEA 691 (1311)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCC------CChh
Confidence 6666655555442 222333344444444444444444445555555555 5555555532221 0111
Q ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHh
Q 000217 815 GLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEG 883 (1849)
Q Consensus 815 ~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~ 883 (1849)
....+.+......+..-....+....+.+.++....|..-.-.+..+..+....+..++..+.-+..+.
T Consensus 692 e~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l 760 (1311)
T TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760 (1311)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 111222222222223222344455556666666666655555555555555555666665555544433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.70 E-value=3e-08 Score=132.24 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=24.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000217 764 VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAEL 826 (1849)
Q Consensus 764 E~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~el 826 (1849)
+..+..+..+++.+...+..++.....+..+...+..+...+..++..+...+..++.....+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 787 (1179)
T TIGR02168 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333334444444444444444444444333333
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.68 E-value=9.1e-09 Score=137.56 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=21.2
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 925 CQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEIL 974 (1849)
Q Consensus 925 cQk~~eas~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~L 974 (1849)
...+..+-..+..+|..|.... ...+..-+..+......++..|
T Consensus 995 ~~dl~~~~~~l~~~i~~l~~~~------~~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 995 RAKLEEERKAILERIEEYEKKK------REVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666332 2233334444445555555554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.67 E-value=2.8e-08 Score=132.56 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000217 923 FECQKLLQESSLSEKLIHKLENENCEQQEE-MRSLVDQIKVLRVQLYQLLEIL 974 (1849)
Q Consensus 923 ~EcQk~~eas~~s~~lIseLe~E~~~~q~e-~~~Ll~~i~~Lr~gi~qvl~~L 974 (1849)
...+.+..+..-....|.++..+....-.+ .+.+..=+..+..-+..++..|
T Consensus 1000 ~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 1000 ERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556677777777666554322 3444455555555566666654
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=2.2e-07 Score=127.39 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH---HHHHHHhhHHHHHHHHHHH--H
Q 000217 415 GKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK---CLLLERSNQTLHSELESMV--Q 489 (1849)
Q Consensus 415 ~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~---~~~LE~~~q~L~~E~e~L~--q 489 (1849)
.............++.+..++...+..++...+.+.....++......+...+.. ...++..+..+...++... .
T Consensus 415 ~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1311)
T TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNS 494 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555666667777777888888888888877777777777777777776654432 2233333333333333322 1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000217 490 KMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVE 569 (1849)
Q Consensus 490 k~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~ 569 (1849)
.......++..++.++..|...+..-...+..+. .++-..-++..+..++..+...|.. .+.
T Consensus 495 ~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~k~~~~~~----------~~~ 556 (1311)
T TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN--------HHTTTRTQMEMLTKDKMDKDEQIRK----------IKS 556 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 2223333344444444444333333111111111 1222233344444444444444443 333
Q ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000217 570 KVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS 649 (1849)
Q Consensus 570 ~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~ 649 (1849)
.+.+....+-. ++.. . ..+++.+.++......++.++...-.+...+...+..+..++..+..+..+..+.|...
T Consensus 557 ~~~~~~~~~~~-~~~~--~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~- 631 (1311)
T TIGR00606 557 RHSDELTSLLG-YFPN--K-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV- 631 (1311)
T ss_pred HHHHHHHHhcC-CCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44444433322 2221 1 34444444444444444444433333445666777777788888888888888877722
Q ss_pred CCCcchhhhHHHHHHHhhhhHHHHHHh
Q 000217 650 LNPENFGLSVKELQDENSKLKEVYERD 676 (1849)
Q Consensus 650 ~~~e~~~~~vkeLQ~~n~~Lke~~s~~ 676 (1849)
-.++.+-..|.++++...........+
T Consensus 632 ~~~~~~~~~L~~~~~~l~~~~~~~~~~ 658 (1311)
T TIGR00606 632 CGSQDEESDLERLKEEIEKSSKQRAML 658 (1311)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 255566668888888777776544433
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.63 E-value=6.7e-08 Score=129.39 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHHHHhHhhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHH
Q 000217 998 QVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAE 1050 (1849)
Q Consensus 998 ~i~~~~~~l~~s~~~~q~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~ 1050 (1849)
.+..++..+...+..+..+|...+.+---+..-+..+.....+|...+..|..
T Consensus 955 ~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1007 (1164)
T TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007 (1164)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555554444444444444444444444444433333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.55 E-value=4.5e-08 Score=128.78 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=116.4
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSEL 456 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Ei 456 (1849)
..|..++..+..+......++..+..++.+++.|...+.........+.....++..++..++..+.....++..+..+.
T Consensus 265 ~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~ 344 (880)
T PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA 344 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555556666666666666555666666677777777777777777777777776666
Q ss_pred HhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 000217 457 DNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536 (1849)
Q Consensus 457 e~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqS 536 (1849)
+.....+..++.....+......+..+...+...+.....++.....++..+...+.+ ++..+..+
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~-------~~~~~~~~------- 410 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD-------APVDLGNA------- 410 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhhh-------
Confidence 6666666666666555555555555555555555555555555555555554444432 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHh------hcccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 000217 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK---EEN------KGLNELNLSSAESIKNLQDEILSLRETIGKLE 607 (1849)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~k---EEn------~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE 607 (1849)
...+..+..++......+..++.....+...+..++ .+. +.+.+... ...+..+...+..+.+....++
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~le 488 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPH--VETIEEDRERVEELEAELEDLE 488 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcch--hhhHHHHHHHHHHHHHHHHHHH
Confidence 222333344444444444455554454555544443 111 11222221 1355555555555555555555
Q ss_pred HHHH
Q 000217 608 AEVE 611 (1849)
Q Consensus 608 ~Ev~ 611 (1849)
.++.
T Consensus 489 ~~l~ 492 (880)
T PRK02224 489 EEVE 492 (880)
T ss_pred HHHH
Confidence 5444
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.53 E-value=2.6e-06 Score=115.86 Aligned_cols=186 Identities=25% Similarity=0.355 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhH
Q 000217 591 NLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLK 670 (1849)
Q Consensus 591 ~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lk 670 (1849)
.|+.++..+.......+.++. .+..++..+...+..+......+..++..+.-.+.......+.++.....|.
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 743 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELK-------SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE 743 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333 4444444444444444444444444333332222233333444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHH
Q 000217 671 EVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVN 750 (1849)
Q Consensus 671 e~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~ 750 (1849)
+....+..+...+-.. +.++-+...-++.+++.++.+++.+......+.+....+..+...+......+-.++....
T Consensus 744 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1163)
T COG1196 744 EELEELEEELEELQER---LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820 (1163)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333332222211 3334444444444445555555554443333333333333333333333333333333333
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 000217 751 ENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLED 786 (1849)
Q Consensus 751 ~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEe 786 (1849)
.....+......++..+.++...+..++..+..++.
T Consensus 821 ~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~ 856 (1163)
T COG1196 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333333333333333333333333333333333333
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.51 E-value=4.1e-08 Score=129.17 Aligned_cols=79 Identities=24% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHH
Q 000217 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTL 480 (1849)
Q Consensus 402 ~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L 480 (1849)
.+......+...+..+......+..........+..++..+...+.++..+..++......++.++.....++.+...+
T Consensus 318 ~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444444444444444444444444444444444433343333333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.44 E-value=3.2e-06 Score=109.60 Aligned_cols=319 Identities=19% Similarity=0.244 Sum_probs=176.0
Q ss_pred HHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHhHHHHHhhhHHhHHHHHHH
Q 000217 277 AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ-------------YQQCLDKLSNMEKNISRAEADAVELSDR 343 (1849)
Q Consensus 277 aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQ-------------ykqClEkis~LE~~~s~aqeeak~lner 343 (1849)
++....-++.-+..+..+++.|...| +.+.+......+ |--...-+..|....-.++.++..+...
T Consensus 58 ~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~ 136 (775)
T PF10174_consen 58 LKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKT 136 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445556777777777777 655544432222 1112233556666777777778888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHH
Q 000217 344 ASKAEIEAQTLKLDLARIEAEKEAAVVKYE-------------ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERL 410 (1849)
Q Consensus 344 a~~AE~Ev~~LKqel~~l~eEKEa~~lqyq-------------QcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~L 410 (1849)
+.+++..+.++++++....++.+-..-..+ .-+..|..++..+.+++ ..++..+.+...+
T Consensus 137 lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le-------~lle~~e~~~~~~ 209 (775)
T PF10174_consen 137 LEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLE-------SLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhh
Confidence 888888888888888888776654432110 11122222222222222 2222222222222
Q ss_pred HHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHH
Q 000217 411 KQALG------KLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSEL 484 (1849)
Q Consensus 411 k~~i~------kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~ 484 (1849)
+.++. .-...-++++.-++....+|.++|..+..++.++.+|.+.+.....--..+...+..-.+.-..+++.+
T Consensus 210 r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~ 289 (775)
T PF10174_consen 210 REQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKM 289 (775)
T ss_pred hHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHH
Confidence 11111 111222356666677788999999999999999999977654333322222222112222223334445
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000217 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSL 564 (1849)
Q Consensus 485 e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L 564 (1849)
+.+...++-...++...+.++..+.....+-..++--.-.+|...+.-.+..|-++.+|..++..+...++--..++..+
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~ 369 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKL 369 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555544444444445555555566667888888888888888887777777777
Q ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHH
Q 000217 565 QEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETI 603 (1849)
Q Consensus 565 ~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~ 603 (1849)
+.+....+-|+..|.+.+--...-|..||..|.+|-+..
T Consensus 370 qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 370 QEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777655555555444444444555555554444433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.43 E-value=1.2e-05 Score=109.57 Aligned_cols=278 Identities=26% Similarity=0.349 Sum_probs=143.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000217 351 AQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1849)
Q Consensus 351 v~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq 430 (1849)
+..|+.++..+. ......+|.+-...+..+...+..+++....+...+..++.++..++..+..+......++..+..
T Consensus 215 y~~l~~e~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~ 292 (1163)
T COG1196 215 YQELKAELRELE--LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292 (1163)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444332 223334466666677777777777777777777778888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000217 431 CLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510 (1849)
Q Consensus 431 ~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~ 510 (1849)
....+..++..+....+.+..+...+......+..++.....++..+.........+ ......+.....+.+....
T Consensus 293 ~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL----EQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888877777666666665555444433333321111111 1111122222222222211
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHH
Q 000217 511 -CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESI 589 (1849)
Q Consensus 511 -siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sI 589 (1849)
..++.-..+......+..+....+..+.++..+..++......+..+.....++..++..+..+...+....-.....|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1163)
T COG1196 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448 (1163)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1111122222233333333333333444555555555554444444444444454444444444443332222222244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAM 641 (1849)
Q Consensus 590 k~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l 641 (1849)
..|+..+..++.....++.++. .++..++....+++.+..++..+
T Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 449 EELEEQLEELRDRLKELERELA-------ELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333 44444444444444444444333
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=8.9e-06 Score=107.33 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
.|..|++++..+++-...++.++.
T Consensus 460 ei~~l~~~~~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 460 ELKRIEKELKEIEEKERKLRKELR 483 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655555555444
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.31 E-value=1.1e-05 Score=106.60 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=15.8
Q ss_pred HhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000217 324 SNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1849)
Q Consensus 324 s~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l 361 (1849)
..++.++.........+..++...+.++..++..+..+
T Consensus 241 ~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334334444444444444444444
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.13 E-value=0.0002 Score=93.40 Aligned_cols=516 Identities=19% Similarity=0.224 Sum_probs=241.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHH-----
Q 000217 332 RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESE----- 406 (1849)
Q Consensus 332 ~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~e----- 406 (1849)
...++++....+....-.++..++..+-....+...+ ...|..|..++ .++.++.++....+++...
T Consensus 36 fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~-------~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~ 107 (775)
T PF10174_consen 36 FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKA-------QEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQ 107 (775)
T ss_pred ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH-------HHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhh
Confidence 4567777777777777777888888877777666633 36777788887 7787777777765554222
Q ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHHhhH
Q 000217 407 -VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKG-------AEEKCLLLERSNQ 478 (1849)
Q Consensus 407 -v~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~-------lE~~~~~LE~~~q 478 (1849)
++.....+..|..+.+.++..+..+..++-.++..+-..|........+|+.+...|.. .+....
T Consensus 108 ~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~------- 180 (775)
T PF10174_consen 108 ELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNE------- 180 (775)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhH-------
Confidence 44445555566666666666666666666666666555555555555555555554421 111100
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHh
Q 000217 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1849)
Q Consensus 479 ~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE 558 (1849)
+.....+++-....++.+-.....++.-+.+ .++.- .-..+-...-.+|+.-|..+-..+..+|
T Consensus 181 ------------~~~~~~~~e~~~~~le~lle~~e~~~~~~r~---~l~~~-~~~~~~~a~t~alq~~ie~Kd~ki~~lE 244 (775)
T PF10174_consen 181 ------------ALRRIREAEARIMRLESLLERKEKEHMEARE---QLHRR-LQMERDDAETEALQTVIEEKDTKIASLE 244 (775)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHH-hhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111111111111111110000 00000 0011112222356667777777778888
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 559 TRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL---SLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635 (1849)
Q Consensus 559 ~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~---~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln 635 (1849)
.-+.+|+++|+.++-.....+.- . ...++.|.-.-+ .+|..|..++.|++...-|-.++|-
T Consensus 245 r~l~~le~Ei~~L~~~~~~~~~~-r--~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt------------- 308 (775)
T PF10174_consen 245 RMLRDLEDEIYRLRSRGELSEAD-R--DRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT------------- 308 (775)
T ss_pred HHHHHHHHHHHHHHhcccccccc-h--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 87888888888774433222111 1 113334433333 3344455555555533334444444
Q ss_pred HHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhh
Q 000217 636 KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK-----------LLEKNAVLENSL 704 (1849)
Q Consensus 636 ~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mek-----------LlEkns~LE~SL 704 (1849)
+..++.++.++. +.-|..|+++.......++.+.++-++|..+|..-+. +-++.+.+-..+
T Consensus 309 -~l~~~~~~~~d~-------r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 309 -RLETLEEQDSDM-------RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred -HHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433322 4444555555556666666666666666666665333 333333333444
Q ss_pred hhhhhhhHhHHHHHHHHHHH---HHHHHHhhhH-hHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000217 705 SDLNVELEGVRDKVKALEEV---CQNLLAEKST-LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1849)
Q Consensus 705 Sd~n~ELegLR~K~k~LEes---c~~L~~EKs~-L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K 780 (1849)
+++...++-.-.|+..|..- +.....+|.. |..++..|.+|-...... . +=..|-.+..|++-++..
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~--~-------~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNED--E-------ALETLEEALREKERLQER 451 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchH--H-------HHHHHHHHHHHHHHHHHH
Confidence 44444444333344443333 2222223333 566666666544433221 0 112333444444444444
Q ss_pred HHHHHHHHH-HhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhc--------------hhHHHHHHHHHHH
Q 000217 781 SKSLEDSCL-LLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG--------------LEEEKESTLQKVE 845 (1849)
Q Consensus 781 ~k~lEes~~-~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~--------------lq~Eke~~~~~ve 845 (1849)
+........ ....+.-.+..+...+...++.++..+-...-....+.+..+. |.++.++.-+++.
T Consensus 452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~ 531 (775)
T PF10174_consen 452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHE 531 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHH
Confidence 443322211 2222233333334444444444444333333333333333333 3334444444444
Q ss_pred HHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 000217 846 ELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKE 916 (1849)
Q Consensus 846 el~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~ 916 (1849)
.+..++..- ..+. ++ -.++..|+..+....++...-..+++.=++.+-.+-.+-+...+-|.+|+.
T Consensus 532 kl~~ql~k~---~~~~-e~-~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Lek 597 (775)
T PF10174_consen 532 KLEKQLEKL---RANA-EL-RDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEK 597 (775)
T ss_pred HHHHHHHHH---HhCH-hh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444330 0111 11 225666666666666666555555555555555555555555555555554
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=0.0003 Score=92.53 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQA 640 (1849)
Q Consensus 561 ~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~ 640 (1849)
...+++.|..++.|...+++.... -.-|+.||+.|..+.-.. +.+.++.+++++.+..-
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~--------------------~q~qk~kv~~~~~~~~~ 918 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEK--------------------VQAQKDKVEKINEQLDK 918 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchh--------------------hHHhHHHHHHHHHHHHH
Confidence 455666777777777777655433 357788888777766533 33677777888888878
Q ss_pred HHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhHhHHH
Q 000217 641 MVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK----LLEKNAVLENSLSDLNVELEGVRD 716 (1849)
Q Consensus 641 l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mek----LlEkns~LE~SLSd~n~ELegLR~ 716 (1849)
+...+..+++..+.....+..+|..++.|...|.....|.+.|.+.+...+. +-.++.--+.++-+++.++.+++.
T Consensus 919 l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~ 998 (1293)
T KOG0996|consen 919 LEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKS 998 (1293)
T ss_pred HHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777888888888889999999999999999999999999999988887543 222233334455555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 000217 717 KVKALEEVCQNLLA 730 (1849)
Q Consensus 717 K~k~LEesc~~L~~ 730 (1849)
.+...+.+...|+.
T Consensus 999 ~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 999 ELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444444443
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.08 E-value=1.8e-11 Score=159.81 Aligned_cols=714 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 000217 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486 (1849)
Q Consensus 407 v~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~ 486 (1849)
...|...|.+...+..++..+++.-...+..|.-.+...|..|.-|..+++....-=.-+|.....|..++..|..+++.
T Consensus 6 ~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee 85 (859)
T PF01576_consen 6 KEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEE 85 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666667777777666666666666666666666666666665554444555555666666666666666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000217 487 MVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQE 566 (1849)
Q Consensus 487 L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ 566 (1849)
.....+....-....-.|+..|+..+.+.+ ..-|.++..|.+-|+. .+..|...|.........++..+..|+.
T Consensus 86 ~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~---~~~e~~~~~lrkkh~~---~~~eL~eqle~lqk~k~~lEK~k~~l~~ 159 (859)
T PF01576_consen 86 AGGATQAQIELNKKREAELAKLRRDLEEAN---LQHEATLAELRKKHQD---AVAELNEQLEQLQKQKAKLEKEKSQLEA 159 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhCcHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544433332222334667778877776533 2334555555555543 3444445555555555667788888888
Q ss_pred HHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 567 EVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 567 ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
++..+...+..+......+...++.+...+..++-.....+..+. .|.....++-.++..|...+......+.
T Consensus 160 e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~-------el~~~k~kL~~E~~eL~~qLee~e~~~~ 232 (859)
T PF01576_consen 160 ELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN-------ELTEQKAKLQSENSELTRQLEEAESQLS 232 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777777788887777777765555444222 2222222222222333322222222222
Q ss_pred hcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhHhHHHHHHHHH
Q 000217 647 SVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEK----NAVLENSLSDLNVELEGVRDKVKALE 722 (1849)
Q Consensus 647 ~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEk----ns~LE~SLSd~n~ELegLR~K~k~LE 722 (1849)
.+ .-.|..|-.+|.++..-++. ...|...+..+..++++||+.+-+-.
T Consensus 233 ~l----------------------------~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~ 284 (859)
T PF01576_consen 233 QL----------------------------QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE 284 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH----------------------------HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 11 22344555555554433332 45666777788888888888877777
Q ss_pred HHHHHHHHhhhHhHhhHHHHHhhhHHHHHH-HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000217 723 EVCQNLLAEKSTLVAEKNSLFSQLQDVNEN-LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITE 801 (1849)
Q Consensus 723 esc~~L~~EKs~L~sEk~~LvSQLq~~~~~-l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~E 801 (1849)
++-..|....+.+..|=..+-+.++..... +..|++-.-.|...|.+++..++....++..++-.+.-|..+...+..+
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~e 364 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSE 364 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766666666665443 6667777777888888888888888888888888888887777777777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH---HhHHHHHHHhHhhhhchHHHHhhhHHhhhh
Q 000217 802 RVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ---FSLDAEKQQHASFVQLSETRLAGMESQISF 878 (1849)
Q Consensus 802 k~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~---~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~ 878 (1849)
.....+....+..+-+.+.+.++++..++..++.+.+..-.+...+. +.|..++.+. ...+..++..+..
T Consensus 365 Le~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~-------~e~~e~lere~k~ 437 (859)
T PF01576_consen 365 LEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEEL-------QEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHH
Confidence 77777777777777777777888888888777777765544433332 2222221111 1112222222222
Q ss_pred HHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 000217 879 LQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVD 958 (1849)
Q Consensus 879 LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe~E~~~~q~e~~~Ll~ 958 (1849)
|+.+..-....+. -..+.+.+|+...=.|-.+..-+-.+-.=++.-+...+....-.++++..+-.
T Consensus 438 L~~El~dl~~q~~--------------~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 438 LQDELEDLTSQLD--------------DAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccchhhhh--------------hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111111100 11112222222222221111110000000000011111111112222211111
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhhHHHHHhhHHHHHHHHHHHHH
Q 000217 959 QIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEA 1038 (1849)
Q Consensus 959 ~i~~Lr~gi~qvl~~L~i~~~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q~en~~~~~E~svL~t~l~ql~~e~ 1038 (1849)
++.. ... .+|+-+-.+=....-.|..|+.++..=-......+-.+.=|-.-+..|..-+
T Consensus 504 e~er------------------~l~---eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~l 562 (859)
T PF01576_consen 504 EIER------------------ELQ---EKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQL 562 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH------------------HHH---hhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 000 1111000111111222333333332111111111111111111111111111
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhh
Q 000217 1039 ENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKV 1118 (1849)
Q Consensus 1039 ~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~ 1118 (1849)
......+..+...+.-...++--||....+-......+...+.....+...|.+|+..++..+..+..+...++.+...+
T Consensus 563 d~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~ 642 (859)
T PF01576_consen 563 DHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDEL 642 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222333334444555555666666666666667767766677777888899999988888888999999998888
Q ss_pred hHhhhHHHHHhhhHHHhhhhhhhhhhhHHHHhhhcccchhhhhhhhHHHHHHHHHHHHhHhhhh-------ccchhHHHH
Q 000217 1119 LDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLG-------CINNELEEK 1191 (1849)
Q Consensus 1119 l~e~~sL~~~~~~L~e~~~~lE~en~~~l~E~i~~snLs~~~~~~~~Ek~~~l~~L~e~l~~L~-------~~n~~L~~~ 1191 (1849)
......|......+...+..+|.+...+=.+.=-.-+-.-...+....-...+..|..+|..-. ..+..|...
T Consensus 643 ~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q 722 (859)
T PF01576_consen 643 QERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQ 722 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777777777776654332211111112222223333334555555555543 444455555
Q ss_pred HHHhhhhhHHHH
Q 000217 1192 VRLKDGKLEDVQ 1203 (1849)
Q Consensus 1192 v~~~~~kl~~~e 1203 (1849)
|+.|..|+..++
T Consensus 723 ~keLq~rl~e~E 734 (859)
T PF01576_consen 723 VKELQARLEEAE 734 (859)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 555555554433
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.93 E-value=0.0013 Score=87.84 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchh
Q 000217 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSE 286 (1849)
Q Consensus 237 ~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~e 286 (1849)
.-.+.++..+..+.++.... ......+.+++.++..+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~ei~~l----e~~~~~l~~~e~eL~~~~~~i~el~~ 211 (895)
T PRK01156 166 RNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIADDEK 211 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555543222 12344555555555555544444433
No 23
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.90 E-value=0.00094 Score=84.25 Aligned_cols=522 Identities=21% Similarity=0.255 Sum_probs=273.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHH------
Q 000217 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARL------ 305 (1849)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L------ 305 (1849)
..++..-|.+.+++|..||=+-|.+-+.++..+.---+|=...+ |-...|+| |+.+-++.
T Consensus 108 Lqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nn-aTR~lCNl-------------LKeT~~rsaEK~~~ 173 (786)
T PF05483_consen 108 LQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENN-ATRHLCNL-------------LKETCQRSAEKMKK 173 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhh-HHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 45788889999999999998888777777666655555533332 12223322 23333221
Q ss_pred -HHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHhHHH
Q 000217 306 -ETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK--YEECSRMISAL 382 (1849)
Q Consensus 306 -~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lq--yqQcLe~IS~L 382 (1849)
+.+++-..--| ..++.-+.+....|+.|+ ..+|.+-.-++ .+.|++.|..|
T Consensus 174 yE~EREET~qly---------------------~~l~~niekMi~aFEeLR-----~qAEn~r~EM~fKlKE~~~k~~~l 227 (786)
T PF05483_consen 174 YEYEREETRQLY---------------------MDLNENIEKMIAAFEELR-----VQAENDRQEMHFKLKEDYEKFEDL 227 (786)
T ss_pred HHHHHHHHHHHH---------------------HHHhhhHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23333332222 223334444444454443 23444444343 55788888888
Q ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000217 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK 462 (1849)
Q Consensus 383 E~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~k 462 (1849)
+.+. ...+..-+.+|.-|...+......+..+...++.+..+|..|+..-....+-++..+.+-+++...
T Consensus 228 eeey----------~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~e 297 (786)
T PF05483_consen 228 EEEY----------KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQE 297 (786)
T ss_pred HHHH----------HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 8772 233444577888888888888888899999999999999999988887777777777777777766
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------c
Q 000217 463 LKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHS-------Q 535 (1849)
Q Consensus 463 Lk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhS-------q 535 (1849)
|.+.-..++..+..--+|..+++.....+....++.... ++.++.....-...+.+..++...|+.+.. .
T Consensus 298 L~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~---~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~ 374 (786)
T PF05483_consen 298 LEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQ---MEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK 374 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554444333333333334444433333333332222 222222222222333444444444433321 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000217 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615 (1849)
Q Consensus 536 SQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ 615 (1849)
..++++.|.+|++++...|.+|-...+.=+-++..++... .+.++|-+-...++.
T Consensus 375 ~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L------------------~e~qkll~ekk~~ek------- 429 (786)
T PF05483_consen 375 NEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKIL------------------AEKQKLLDEKKQFEK------- 429 (786)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH------------------HHHHHHHHHHHHHHH-------
Confidence 2456677888888887777777644433332222221111 011111110000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000217 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695 (1849)
Q Consensus 616 ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlE 695 (1849)
-.+.|+..-.++..-+....++.+.|..+|... .+
T Consensus 430 i~E~lq~~eqel~~llq~~ekev~dLe~~l~~~---------------------------------------------~~ 464 (786)
T PF05483_consen 430 IAEELQGTEQELTGLLQIREKEVHDLEIQLTTI---------------------------------------------KE 464 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------------------------------------------HH
Confidence 001111111111111122222222222222110 00
Q ss_pred HHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHH--------------HHHhhhhhhh
Q 000217 696 KNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNE--------------NLKKLSDENN 761 (1849)
Q Consensus 696 kns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~--------------~l~~L~Ekns 761 (1849)
.+-..=.-+-++.++|+.-+.|...|=..|+.|.-++..++-|.....+.+....+ ..++|.+.++
T Consensus 465 ~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~ 544 (786)
T PF05483_consen 465 SEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNT 544 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122335566666656666666677777777777777776666666554433 3445666666
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHH
Q 000217 762 FLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTL 841 (1849)
Q Consensus 762 ~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~ 841 (1849)
.|=+.|..+..++...+. +++..+..-..+......+......|+..+...+.+|.++.+.- .+++
T Consensus 545 ~Lrneles~~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-----------~K~i 610 (786)
T PF05483_consen 545 QLRNELESVKEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-----------NKNI 610 (786)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------HhHH
Confidence 665555544444433222 22222222122223345777777788888888888887766643 3333
Q ss_pred HHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHH
Q 000217 842 QKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1849)
Q Consensus 842 ~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~ 897 (1849)
..+..-+..|.-+ .-.--++++-|+-.|+.|+++....++.++++-|+.
T Consensus 611 eeLqqeNk~LKKk-------~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 611 EELQQENKALKKK-------ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333222 111245677889999999999999999998877644
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.86 E-value=3e-10 Score=148.73 Aligned_cols=255 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHH
Q 000217 508 LWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAE 587 (1849)
Q Consensus 508 L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~ 587 (1849)
+...+.+-..++-+.+..+..+....+..+.|+..|...+...-..+..+...+..|..++..++.....-.....+...
T Consensus 185 lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~ 264 (859)
T PF01576_consen 185 LEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEK 264 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHH
Confidence 33444444455555666666665555555666666665555555556666666667777777776665555544445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh----hcCCCCcchhhhH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVE----QVE----SVSLNPENFGLSV 659 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~e----ql~----~l~~~~e~~~~~v 659 (1849)
.++.++.++..|++.... ..+.+..|+..+.+...++..+-.+|..-.. .+. .+...+.-....+
T Consensus 265 ~l~~le~e~~~L~eqlee-------E~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~l 337 (859)
T PF01576_consen 265 QLRQLEHELEQLREQLEE-------EEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQL 337 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888886654 3446777877777777777777666654222 222 1333333334444
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhH
Q 000217 660 KELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK 739 (1849)
Q Consensus 660 keLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk 739 (1849)
.+++..|..|.-.+.++.+|-..+...| ++.--.++-|++.-..+-..+..++.++..+......+..+...+.++-
T Consensus 338 e~~~~~~~~LeK~k~rL~~EleDl~~eL---e~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~ 414 (859)
T PF01576_consen 338 EEANAKVSSLEKTKKRLQGELEDLTSEL---EKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETEL 414 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444555444444444444444333 3333334455555555555555555555444444444444444444444
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHH
Q 000217 740 NSLFSQLQDVNENLKKLSDENNFLVNSLFDANA 772 (1849)
Q Consensus 740 ~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ 772 (1849)
..|-.+++.....+..|...|..|...+.|+..
T Consensus 415 ~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~ 447 (859)
T PF01576_consen 415 FKLKNELEELQEQLEELERENKQLQDELEDLTS 447 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 444445544444444444444444444444433
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.85 E-value=0.0002 Score=92.66 Aligned_cols=317 Identities=23% Similarity=0.238 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 000217 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELN--LSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQE 623 (1849)
Q Consensus 546 Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n--~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqe 623 (1849)
++.--...+.++..-+..|..+-..+++.+++|.-++ .+....|-.|+..+.-+.. ++...|..
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~--------------erdtdr~k 323 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRS--------------ERDTDRHK 323 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH--------------hhhhHHHH
Confidence 3333445577777888999999999999999997776 4433344444444443333 56677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH--HHHHH
Q 000217 624 IYCLKEELNELNKKHQAMVEQVESVSL-------NPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI--MEKLL 694 (1849)
Q Consensus 624 l~~lkee~~~Ln~k~~~l~eql~~l~~-------~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~--mekLl 694 (1849)
+..+.+|+..|.-...++--++..+++ .-+|++.-+..|-. ---|+-.. ..-++...+..+|. .+.+.
T Consensus 324 teeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllL--Enrrlt~tleelqsss~Ee~~ 400 (1195)
T KOG4643|consen 324 TEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLL--ENRRLTGTLEELQSSSYEELI 400 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHH--HhHHHHHHHHHHhhhhHHHHH
Confidence 888888887776666555555555554 22222222222221 00111111 22466777777775 67788
Q ss_pred HHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhh---hH
Q 000217 695 EKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD---AN 771 (1849)
Q Consensus 695 Ekns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd---~~ 771 (1849)
-|...|++.-.++-.+.+-|-+++..+-....-|.+.-..|.-|++.|.-.....+..++.=..++..+-.-+|+ +.
T Consensus 401 SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~ 480 (1195)
T KOG4643|consen 401 SKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLE 480 (1195)
T ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888887777777777788888777777777777777888888888888888888887666666666655554 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhH
Q 000217 772 AEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1849)
Q Consensus 772 ~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL 851 (1849)
++.+.++.+.+.+-.+++.=..+.+++.+.+..+..|+......+.-+.++..+|+....++..|....+.+|-.|--.
T Consensus 481 ~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t- 559 (1195)
T KOG4643|consen 481 AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT- 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-
Confidence 7888889999999888888888999999999999999999998888888888888888888888887777766543221
Q ss_pred HHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHH
Q 000217 852 DAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQI 902 (1849)
Q Consensus 852 ~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqi 902 (1849)
| +...+-|.+...+..|..++++.++|=.
T Consensus 560 ---~-------------------qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 560 ---S-------------------QNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred ---h-------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1 3344556667777777777777776644
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=0.0027 Score=84.02 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=99.2
Q ss_pred hhhhhhHHHHHHHH----HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhc----cchhHhhHHHHHHHHHHH-
Q 000217 230 ERMGKAEMEILTLK----NALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSK----GLSEQASIAEAEVQTLKE- 300 (1849)
Q Consensus 230 eR~~kAe~EI~~Lk----k~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~----~L~era~~ae~E~~sLk~- 300 (1849)
.|..-|+.|-..|- .++.=|+.|.+....+-..+--+|+..-+.|..+|+... +|.+.+.+..++...-.+
T Consensus 288 ~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 288 NRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 34455666666654 467778888887755443333333333344444443332 222333333322221111
Q ss_pred --HHHHHHHHHHHhHH-HHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000217 301 --ALARLETEREANIR-QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSR 377 (1849)
Q Consensus 301 --~la~L~~ekea~ll-QykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe 377 (1849)
+..+--.++.+.+- -+.+|..+...++.+-..-++..+.+...+.+++.+++..+.+...++.--+.+....++|-.
T Consensus 368 ~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ 447 (1293)
T KOG0996|consen 368 NEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT 447 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH
Confidence 11111112222222 356888889999999999999999999999999999999888888888777777777888888
Q ss_pred HhHHHHHhhhhhHHh
Q 000217 378 MISALEDKLLHSEED 392 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~ 392 (1849)
.|..|+.....++..
T Consensus 448 ei~~L~~~~~~~~~~ 462 (1293)
T KOG0996|consen 448 EIEQLEELLEKEERE 462 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887775544433
No 27
>PRK01156 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.0041 Score=83.26 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 428 YQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 428 ~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
+.++...|..++..+.....++..+
T Consensus 300 ~~~~~~~l~~l~~~l~~l~~~l~~~ 324 (895)
T PRK01156 300 YFKYKNDIENKKQILSNIDAEINKY 324 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444333
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=0.0044 Score=81.06 Aligned_cols=143 Identities=22% Similarity=0.220 Sum_probs=109.3
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000217 701 ENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1849)
Q Consensus 701 E~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K 780 (1849)
++.|-.+...++..+...+.=+...+.|.-|-..+..|..+.=+|++.+......|..+...|+.++.++..+...+...
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 34444444445555555555566666677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHH
Q 000217 781 SKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQK 843 (1849)
Q Consensus 781 ~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~ 843 (1849)
+++.-.-....+.+-+.+........+....+....+-|+.+++.+...+.++..+.++...+
T Consensus 873 l~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 873 LKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred HHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888888888877777777776665544
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.73 E-value=0.005 Score=81.62 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=98.7
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhH-HHHHHHHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDS-KRINKVAD 401 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~-~~ln~~~e 401 (1849)
++..|.++...-.++..-.+.+..|..-+.+++.+...+.++.-..--.|++-=..+..++..|.+++... ..++.+..
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~ 397 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELE 397 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44444445544455555555555555555555555555544443333333333466677888888888887 88888899
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 000217 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGA 466 (1849)
Q Consensus 402 ~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~l 466 (1849)
..+.++..|+++|.++++...++...++.+.+++...+.++.+-+..+.-|..-|+.-...|+++
T Consensus 398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888777666666655555555444444
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.66 E-value=0.0076 Score=80.32 Aligned_cols=180 Identities=24% Similarity=0.312 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHhHHHH
Q 000217 259 QYRQSLERLSNLESEVS-----HAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQ----QCLDKLSNMEKN 329 (1849)
Q Consensus 259 qY~~slek~~~LE~eis-----~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQyk----qClEkis~LE~~ 329 (1849)
+|++-++++-.-++++. -+|...+..++++...+...+.|...+.+++.+.+-. -++. ...+++..+..+
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444443 3556666666666666666666666666665554433 1111 223344444444
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Q 000217 330 ISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409 (1849)
Q Consensus 330 ~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~ 409 (1849)
+-.+..+..-..+-+.+...-.+.+.. +.++-++.-..++.++..+++.-.++...-..+...++.
T Consensus 548 le~~~~d~~~e~~~~~kl~~~~~e~~~--------------~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~ 613 (1317)
T KOG0612|consen 548 LEEAELDMRAESEDAGKLRKHSKELSK--------------QIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEK 613 (1317)
T ss_pred HHHhhhhhhhhHHHHhhHhhhhhhhhH--------------HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222221111111111111 122222233345555555555555555544444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHS 454 (1849)
Q Consensus 410 Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~ 454 (1849)
....-..+.+...++...+..+.+++..+...+...++ .+|.+.
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~ 657 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQ 657 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence 44444444444444444444444444444444444444 344333
No 31
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.66 E-value=0.0016 Score=82.68 Aligned_cols=132 Identities=23% Similarity=0.280 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000217 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1849)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~e 616 (1849)
..|+......|+.....+..+......|..+|..++.++..+...--.+...|.+|..++...+--......+.....+.
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 34555555555566667778888888999999999999999977766666789999999988887665544444333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhh
Q 000217 617 RNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668 (1849)
Q Consensus 617 k~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~ 668 (1849)
-..+...+..+..+.+........+...+.-+.-..+..+..+...+..+..
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666655666655655555555556666666666543
No 32
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.65 E-value=0.0068 Score=79.25 Aligned_cols=410 Identities=21% Similarity=0.210 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhcCCCC
Q 000217 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQ-----------------AMVEQVESVSLNP 652 (1849)
Q Consensus 590 k~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~-----------------~l~eql~~l~~~~ 652 (1849)
-.|..++..++.-+..|+.||+-..+---.|.++|.+++-+++.|+.... ++.++....+.
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~-- 250 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDT-- 250 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCC--
Confidence 34678899999999999999885555555667777777777777766442 33333333331
Q ss_pred cchhhhHHH---HHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 000217 653 ENFGLSVKE---LQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLL 729 (1849)
Q Consensus 653 e~~~~~vke---LQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~ 729 (1849)
+-+..+-+ +-+.-..|++.-..+-.||..|-+|||-+..=.+. ..+|..+--++..++.++.---...---.-|.
T Consensus 251 -~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 251 -TYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred -ccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11111111 12333444444444556778888899988777766 77787777777777777776665555556677
Q ss_pred HhhhHhHhhHHHHHhhhHHHHH----------HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHhhhhh
Q 000217 730 AEKSTLVAEKNSLFSQLQDVNE----------NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDS----CLLLDNEK 795 (1849)
Q Consensus 730 ~EKs~L~sEk~~LvSQLq~~~~----------~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes----~~~l~~e~ 795 (1849)
.|.++|...++.|-+|.....- ++....+..+- ..+ ++.+++. +.+...|++. +..+--.+
T Consensus 329 eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ra--lkllLEn-rrlt~tleelqsss~Ee~~SK~ 403 (1195)
T KOG4643|consen 329 EENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS--DRA--LKLLLEN-RRLTGTLEELQSSSYEELISKH 403 (1195)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHH--HHHHHHh-HHHHHHHHHHhhhhHHHHHHHH
Confidence 8888888888888777654321 11111111110 000 1111111 1122222221 12222233
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHH---HHHhHhhhhchHHHHhhh
Q 000217 796 SCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAE---KQQHASFVQLSETRLAGM 872 (1849)
Q Consensus 796 s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e---~qeh~~~~~~sE~~ls~L 872 (1849)
..+..+..+|.-.++.+++++..+-...+++++..-.|+.|.+..++.+.....++.-+ |....-...+....
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~---- 479 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQL---- 479 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH----
Confidence 44446666677777777777777777777777777777888888888777777776554 22221112122111
Q ss_pred HHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHH--HHHHHHHHHH---hhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 000217 873 ESQISFLQEEGLCRKKAYEEELDKALDAQIEIF--ITQKYIQDLK---EKNFSLLFECQKLLQESSLSEKLIHKLENENC 947 (1849)
Q Consensus 873 E~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~--ilqk~i~Dle---~kN~~ll~EcQk~~eas~~s~~lIseLe~E~~ 947 (1849)
.+.+++...+ |.-. +|++.+.++. .+.-.+....|....-......-+-+|+...-
T Consensus 480 --------------~~et~el~~~-----iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~ 540 (1195)
T KOG4643|consen 480 --------------EAETEELLNQ-----IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLG 540 (1195)
T ss_pred --------------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222222211 1111 3333333222 11112222222222222333344566777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhh--hhHHHHHhh
Q 000217 948 EQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ--NHQVVIENS 1025 (1849)
Q Consensus 948 ~~q~e~~~Ll~~i~~Lr~gi~qvl~~L~i~~~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q~e--n~~~~~E~s 1025 (1849)
.++.+-.+|+.+|..|..+ +|=...| +......+.++. .+....+.+..++--..+++.+ ||+.....+
T Consensus 541 ~lE~ENa~LlkqI~~Lk~t-~qn~~~L--Eq~~n~lE~~~~------elkk~idaL~alrrhke~LE~e~mnQql~~d~~ 611 (1195)
T KOG4643|consen 541 NLEEENAHLLKQIQSLKTT-SQNGALL--EQNNNDLELIHN------ELKKYIDALNALRRHKEKLEEEIMNQQLFEDPI 611 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHH-hHHHHHH--HHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 7888888999999999998 5533332 222222222222 3344455566666667777777 788777776
Q ss_pred HHHHHHHHHHHHHhH
Q 000217 1026 ILVALLGQLKLEAEN 1040 (1849)
Q Consensus 1026 vL~t~l~ql~~e~~~ 1040 (1849)
.+-.-..-|+-.+..
T Consensus 612 ~~kr~ie~Lr~~~~k 626 (1195)
T KOG4643|consen 612 PLKRDIEWLRRKESK 626 (1195)
T ss_pred chhhhHHHHHHHHHh
Confidence 665555555544333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.61 E-value=0.00035 Score=87.69 Aligned_cols=185 Identities=24% Similarity=0.264 Sum_probs=108.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----
Q 000217 552 QILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCL---- 627 (1849)
Q Consensus 552 ~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~l---- 627 (1849)
..+++.......++.++..++++++++.++-.+|...+--|..|++.+.....+.-.|+....-+...|...++..
T Consensus 269 ~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 269 VQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444445555666777777777777777776666667777777777777766665555544433333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000217 628 KEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDL 707 (1849)
Q Consensus 628 kee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~ 707 (1849)
++.....-..-+++... .+..+..|.+|+.+.+.+.+-......|...|--+| +..+|.
T Consensus 349 ke~~~q~~qEk~~l~~~-------~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql--------------~ke~D~ 407 (546)
T PF07888_consen 349 KEGRSQWAQEKQALQHS-------AEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQL--------------GKEKDC 407 (546)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhhh
Confidence 22111111111111111 122234444444444444444444444444443333 233466
Q ss_pred h-hhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhh
Q 000217 708 N-VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLS 757 (1849)
Q Consensus 708 n-~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~ 757 (1849)
| +-|-+.|-.+.+|..+...+.-||-.|..||..|+--+..+.++++++.
T Consensus 408 n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 408 NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 4777778888889999999999999999999999999999999888763
No 34
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.60 E-value=0.0036 Score=79.62 Aligned_cols=365 Identities=15% Similarity=0.156 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHH
Q 000217 401 DKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTL 480 (1849)
Q Consensus 401 e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L 480 (1849)
.+++.+.+.|+..+..+++++......+..+..++-.++.++|-.-.++-+...++.+....|.+.+..+..+-.++..+
T Consensus 116 ~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~e 195 (1265)
T KOG0976|consen 116 LRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANRE 195 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555556666666666666666666666666666666666666665544443333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhh
Q 000217 481 HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560 (1849)
Q Consensus 481 ~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~ 560 (1849)
...+..+.++...-+..-.++-.++..-+..-|+-..+.++--+.++.|+-+. -.-....+.-.+++.+
T Consensus 196 n~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~r-----------k~~s~i~E~d~~lq~s 264 (1265)
T KOG0976|consen 196 KKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLR-----------KTCSMIEEQDMDLQAS 264 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh-----------hhhHHHHHHHHHHHHH
Confidence 33333333332222222112211221111111111112222222222221110 0001111122333333
Q ss_pred hHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhhhHHHHHHHHHHHH
Q 000217 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGK-----------LEAEVELRVDQRNALQQEIYCLKE 629 (1849)
Q Consensus 561 ~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~k-----------lE~Ev~~~v~ek~aLqqel~~lke 629 (1849)
...+.+.+..++--|..|...-......|+.+|.++..||..-.. ++.|+--+..++-++++++...+.
T Consensus 265 ak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarr 344 (1265)
T KOG0976|consen 265 AKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARR 344 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333233356888888888888876542 344555555666677776655554
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHH---HHH-HHHHHHH---------
Q 000217 630 ELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEK---LEI-MEKLLEK--------- 696 (1849)
Q Consensus 630 e~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~k---Lq~-mekLlEk--------- 696 (1849)
..+++..+...++.+=..+-.+. .++++.+.+.+.|+-.|++- +|. |+.+--.
T Consensus 345 k~egfddk~~eLEKkrd~al~dv--------------r~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~ 410 (1265)
T KOG0976|consen 345 KAEGFDDKLNELEKKRDMALMDV--------------RSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK 410 (1265)
T ss_pred hhcchhHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 44433333333332222221222 23334444444444433321 111 3322222
Q ss_pred -HHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhh---hhhhhhhhhhhhhhHH
Q 000217 697 -NAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKL---SDENNFLVNSLFDANA 772 (1849)
Q Consensus 697 -ns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L---~Ekns~LE~slsd~~~ 772 (1849)
+-.-.|.|+.+-..++-+..-...++--|...+.-|+.--.-+.-.++|-..+...+..| .++.-..|..|.-+++
T Consensus 411 dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKa 490 (1265)
T KOG0976|consen 411 DHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKA 490 (1265)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHH
Confidence 222236677777777777777777777777777777776666777778877776654433 4555566777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000217 773 EVEGLRAKSKSLEDSCLL 790 (1849)
Q Consensus 773 ElE~lr~K~k~lEes~~~ 790 (1849)
+++--..|.+.+++-.+-
T Consensus 491 en~rqakkiefmkEeiQe 508 (1265)
T KOG0976|consen 491 ENERQAKKIEFMKEEIQE 508 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666665543
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.57 E-value=0.018 Score=79.80 Aligned_cols=106 Identities=16% Similarity=0.310 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000217 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695 (1849)
Q Consensus 616 ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlE 695 (1849)
..++|++++..+...+..+..+...+..++...+-..+.....+...+-.....+........++..+-.+... -+-+
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~ 678 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE--AKEE 678 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34466666655666666666555556555554333222233333333333333333333333343333333332 1223
Q ss_pred HHHHHhhhhhhhhhhhHhHHHHHHHHHH
Q 000217 696 KNAVLENSLSDLNVELEGVRDKVKALEE 723 (1849)
Q Consensus 696 kns~LE~SLSd~n~ELegLR~K~k~LEe 723 (1849)
.-...+..+..+..++..+....+.+.+
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666665555554444433
No 36
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.52 E-value=0.0023 Score=82.39 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNA 698 (1849)
Q Consensus 619 aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns 698 (1849)
..++++....+.+..+...|+.+..+|+.+-.+.++.+.-.....++-..-...+.....-. +-+ -.
T Consensus 283 ~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~----------E~m---~~ 349 (617)
T PF15070_consen 283 MAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESR----------EAM---VE 349 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccH----------HHH---HH
Confidence 44566777788889999999999999998766666554322111111000000000000011 111 13
Q ss_pred HHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhh------------hHHHHHHHHhhhhhhhhhhhh
Q 000217 699 VLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQ------------LQDVNENLKKLSDENNFLVNS 766 (1849)
Q Consensus 699 ~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQ------------Lq~~~~~l~~L~Ekns~LE~s 766 (1849)
++-..+..+-.|-+.||..++.-..-|+.|......+..+....... -+.+...|++|..+|
T Consensus 350 f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f------ 423 (617)
T PF15070_consen 350 FFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSRF------ 423 (617)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHHH------
Confidence 45566777778888888999988889999888887776665554332 122233455544444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Q 000217 767 LFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEE 846 (1849)
Q Consensus 767 lsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~vee 846 (1849)
-|+=.|+..++..++.||--|--| ..|..+.-..|-.-+..-..++.+|.+-++-..-|..+++..--.+.+
T Consensus 424 -~~~~~e~adl~e~~e~le~~~~ql-------~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~e 495 (617)
T PF15070_consen 424 -MDLMEEKADLKERVEKLEHRFIQL-------SGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLE 495 (617)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHHh-------ccCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566665555444 344445555555555555566777766665555555555444434444
Q ss_pred HH
Q 000217 847 LQ 848 (1849)
Q Consensus 847 l~ 848 (1849)
|+
T Consensus 496 lq 497 (617)
T PF15070_consen 496 LQ 497 (617)
T ss_pred HH
Confidence 33
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.50 E-value=0.0034 Score=79.17 Aligned_cols=278 Identities=20% Similarity=0.313 Sum_probs=134.4
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADK 402 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~ 402 (1849)
+..|+..+..++++...+ ..+.+.+......+..|++....++...-.+|..|+..|..+.......
T Consensus 173 v~~l~~eL~~~~ee~e~L-------~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~------ 239 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQL-------KQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ------ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 334444444444444444 4444455555555666666666667777778888887777665544211
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhH
Q 000217 403 AESEVERLKQALGKLTEEKEALA----LQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQ 478 (1849)
Q Consensus 403 ~e~ev~~Lk~~i~kL~Eekeal~----l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q 478 (1849)
+.....++ .+..+++... .++..+...+...+......+.+...|..++......+...+.....|
T Consensus 240 -e~~~~~lk----~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L----- 309 (546)
T PF07888_consen 240 -EKELDKLK----ELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELL----- 309 (546)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 11122222 2222222222 233333333333333333444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhccCHHHHHHHHHHHHHHHHHH
Q 000217 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTL----QHLHSQSQDELRSLAAELQNRAQIL 554 (1849)
Q Consensus 479 ~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~L----e~LhSqSQeE~~~L~~Ei~~~~~~L 554 (1849)
..|+..+...-.-..-+|..-.-+...|..-+.+....+.++....... +..-....+++..|..|+.....-+
T Consensus 310 --~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 310 --RKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333211111122222223333444433333333333332222211 1111112456777777777777666
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 555 KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNEL 634 (1849)
Q Consensus 555 ~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~L 634 (1849)
..=-...+.|+.++.+-+ . ++..-|.+...+|.-||-....+..|.+....+|..|-+.+.++...++.+
T Consensus 388 qEer~E~qkL~~ql~ke~-------D---~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 388 QEERMERQKLEKQLGKEK-------D---CNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHhh-------h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665566667777776542 2 222356677777777888777777766666666666666665555555544
Q ss_pred H
Q 000217 635 N 635 (1849)
Q Consensus 635 n 635 (1849)
-
T Consensus 458 ~ 458 (546)
T PF07888_consen 458 A 458 (546)
T ss_pred h
Confidence 3
No 38
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=98.48 E-value=0.019 Score=75.51 Aligned_cols=224 Identities=19% Similarity=0.214 Sum_probs=137.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000217 286 EQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKL-SNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1849)
Q Consensus 286 era~~ae~E~~sLk~~la~L~~ekea~llQykqClEki-s~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eE 364 (1849)
+|++-.+..++.|+.-|.....|++.-+.- .+-++ ...++.. ...+.++..+.+.|.....|
T Consensus 45 ~r~~hld~aLkec~~qlr~~ree~eq~i~~---~~~~~s~e~e~~~--------------~~le~~l~e~~~~l~~~~~e 107 (769)
T PF05911_consen 45 DRVSHLDGALKECMRQLRQVREEQEQKIHE---AVAKKSKEWEKIK--------------SELEAKLAELSKRLAESAAE 107 (769)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHHH---HHHHHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhh
Confidence 444455667788888887777776654411 11010 0111111 13344444455555555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------HHHHHHHH
Q 000217 365 KEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE--------------ALALQYQQ 430 (1849)
Q Consensus 365 KEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eeke--------------al~l~~qq 430 (1849)
..+..--.+.=-..|.+|...-..++.+...+..+++-++.+.-.|+-++.-+.++.+ +..-|+.+
T Consensus 108 ~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle 187 (769)
T PF05911_consen 108 NSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLE 187 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5444332333336778888888888888888888888888888888877665555443 36666778
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhhh----------------HHHHHHHHHHhhHHHHHHH
Q 000217 431 CLEAISILEHKLARAEEEAQ----------RLHSELDNGFAKLKG----------------AEEKCLLLERSNQTLHSEL 484 (1849)
Q Consensus 431 ~~~kI~~LE~elS~sQeEv~----------RL~~Eie~~~~kLk~----------------lE~~~~~LE~~~q~L~~E~ 484 (1849)
...||..||-+=...+.-++ +|+.|++....--.+ .......-...+..|-..+
T Consensus 188 ~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (769)
T PF05911_consen 188 SVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERL 267 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHH
Confidence 89999999988877665444 356676664211100 0011111123344455555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAF 526 (1849)
Q Consensus 485 e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL 526 (1849)
..+...+.++-+-|..+..|++.-+...-+...|+...|.-+
T Consensus 268 ~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 268 QAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666667778888999999999999999999998888
No 39
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.37 E-value=0.031 Score=72.99 Aligned_cols=141 Identities=25% Similarity=0.302 Sum_probs=74.5
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHH--HHH----HHHhhhHhHhh
Q 000217 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEV--CQN----LLAEKSTLVAE 738 (1849)
Q Consensus 665 ~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEes--c~~----L~~EKs~L~sE 738 (1849)
+.++|+........||+.|...|++.++-++. -..-||.-...+.+|...+..|-.. +.. ...++.. .+-
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~---a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~-~s~ 341 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEH---AQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKER-DSH 341 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccc-ccc
Confidence 45899999999999999999999988766532 2234445555566666655555431 111 1111100 000
Q ss_pred HHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHH
Q 000217 739 KNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARK 814 (1849)
Q Consensus 739 k~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~ 814 (1849)
.+.-.-++. ...+..|.-|+......+.+++.|+..++.++..++. ...+++..+.++..+|..++..++.
T Consensus 342 ~d~~~ye~D--i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 342 EDGDYYEVD--INGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111111 1113334455555666666667777777777766666 3333444444444455444444444
No 40
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=98.35 E-value=0.029 Score=71.93 Aligned_cols=159 Identities=22% Similarity=0.280 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HhhhhhhhhHHHHHHH----
Q 000217 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHS-------EL-DNGFAKLKGAEEKCLL---- 472 (1849)
Q Consensus 405 ~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~-------Ei-e~~~~kLk~lE~~~~~---- 472 (1849)
.+-+.|..+|..|+++.++++.-..-+.-++.+|...+.=+.+++.+=-. +- .+...-|+--=+.|+.
T Consensus 242 ~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQ 321 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQ 321 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888899999999999998888888888888888877777655321 11 1111222222233332
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHH
Q 000217 473 LERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQ 552 (1849)
Q Consensus 473 LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~ 552 (1849)
|...--........+..+++.+..++.....+-.-|+.+++| ..|+..+..+
T Consensus 322 LkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqD-----K~AElevERv----------------------- 373 (739)
T PF07111_consen 322 LKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQD-----KAAELEVERV----------------------- 373 (739)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHH-----------------------
Confidence 233333444556667777788888888888888888888888 6666666553
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHH
Q 000217 553 ILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILS 598 (1849)
Q Consensus 553 ~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~ 598 (1849)
....|+.++.+..+++..++.++-++...++.+.+=+++
T Consensus 374 -------~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S 412 (739)
T PF07111_consen 374 -------GSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSS 412 (739)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133455555666566655655555555555555444443
No 41
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.037 Score=71.81 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHH
Q 000217 678 CEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVN 750 (1849)
Q Consensus 678 ~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~ 750 (1849)
.|=..|.+.++.|++++.. .++.+-+.-.+...+|...-++.++|..=..+.+.+..+...+++|+....
T Consensus 265 ~e~~~L~Ssl~e~~~~l~~---~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 334 (698)
T KOG0978|consen 265 REMRHLISSLQEHEKLLKE---YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELS 334 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677778888777765 556666777777777777777777777766666666777777777666553
No 42
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.31 E-value=2.5e-06 Score=110.95 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=23.1
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 000217 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIME----KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN 727 (1849)
Q Consensus 658 ~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~me----kLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~ 727 (1849)
.|+.|.......+..+.....+-.++-.++..-+ .+.+++..|...+..+..+++.|+..+..|+.-...
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444334433333322 255555666666666666666666666666655543
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.28 E-value=0.085 Score=74.22 Aligned_cols=341 Identities=18% Similarity=0.200 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 000217 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1849)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~l 313 (1849)
+...|...+=+.++.....|..+.-.....-.++..++..+.+....+..|...+..|..- +.+..+......+.....
T Consensus 276 r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky-leL~ee~lr~q~ei~~l~ 354 (1486)
T PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQ 354 (1486)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455556665666677777777766666666666666666666666666665544443322 222222222333333333
Q ss_pred HHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH----------HH----
Q 000217 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK---YEE----------CS---- 376 (1849)
Q Consensus 314 lQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lq---yqQ----------cL---- 376 (1849)
-++..+.+++...+..+.........+..++..++.++..++..+..+..+.+...-+ |++ |+
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~ 434 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPD 434 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555566666666666666666666666666666666554443333222 222 11
Q ss_pred -------HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHH
Q 000217 377 -------RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK----------------------LTEEKEALALQ 427 (1849)
Q Consensus 377 -------e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~k----------------------L~Eekeal~l~ 427 (1849)
..+.....++...+.....+..++..++..++.+.+.... -...-..+..+
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 2233333333333333333333333333333222222111 11111224445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhh---HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000217 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNG-FAKLKG---AEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQK 503 (1849)
Q Consensus 428 ~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~-~~kLk~---lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~ 503 (1849)
..++..++..|+.-+.+. ..+.||-.+.... ...+.+ ++.-...++.....+..+.....+.-...-+++++...
T Consensus 515 ~~~~~~~~~~l~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~ 593 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQA 593 (1486)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777665543 3455555554332 222221 11112223333444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccc
Q 000217 504 ELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNE 580 (1849)
Q Consensus 504 Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne 580 (1849)
.|..|... .-.|..+..+|..|.--.-...+...++..-++..+.....+......++..+..+.+.+..|..
T Consensus 594 ~i~~l~~~----ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 594 RIQRLAAR----APAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHh----ChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444332 33467777777665333223344455555555555555555555555555555555555555533
No 44
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.20 E-value=0.055 Score=68.81 Aligned_cols=253 Identities=19% Similarity=0.208 Sum_probs=144.4
Q ss_pred hhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh---
Q 000217 656 GLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK--- 732 (1849)
Q Consensus 656 ~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EK--- 732 (1849)
+..|++|+.+...|+-++.....---.+.+-++ |+--...--+.-++++.+-++.|..+..+++.+...+..+-
T Consensus 494 ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~---k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~ 570 (961)
T KOG4673|consen 494 GELITKLQSEENKLKSILRDKEETEKLLQETIE---KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKE 570 (961)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 456666666666666555433221111222221 11111122234455555666677777777776666655522
Q ss_pred -----hHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000217 733 -----STLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807 (1849)
Q Consensus 733 -----s~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~s 807 (1849)
..+..+-.+||-|+.-+.++|..-+.--..=|- -+.-|.+.|-.++...|-.|..+-++-..- -.-|..
T Consensus 571 nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd---~~R~Ei~~LqrRlqaaE~R~eel~q~v~~T---TrPLlR 644 (961)
T KOG4673|consen 571 NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED---MFRGEIEDLQRRLQAAERRCEELIQQVPET---TRPLLR 644 (961)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccHHHH
Confidence 123344566666666666655543322222222 234577777888888888888885554432 345788
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHH-------HHHHHhHhhhhchHHHHhhhHHhhhhHH
Q 000217 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLD-------AEKQQHASFVQLSETRLAGMESQISFLQ 880 (1849)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~-------~e~qeh~~~~~~sE~~ls~LE~~i~~Lq 880 (1849)
||++++..+...---...++ ....+.+..-|..|+ .++|+. -...+.+...+-++++|+
T Consensus 645 QIE~lQ~tl~~~~tawereE----------~~l~~rL~dSQtllr~~v~~eqgekqEl----L~~~~~l~s~~~q~sllr 710 (961)
T KOG4673|consen 645 QIEALQETLSKAATAWEREE----------RSLNERLSDSQTLLRINVLEEQGEKQEL----LSLNFSLPSSPIQLSLLR 710 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHH----------HHHHHhhhhHHHHHHHHHHHHhhhHHHH----HHHhcCCCcchhHHHHHH
Confidence 99999988765322222211 222222332222222 222222 233455666677788888
Q ss_pred HHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q 000217 881 EEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQE 931 (1849)
Q Consensus 881 Ee~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~ea 931 (1849)
.++-...+.++.+-+++..---+.+.+|--++-+++.-..+..||++....
T Consensus 711 aE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~ 761 (961)
T KOG4673|consen 711 AEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK 761 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777788888888888888888898877654
No 45
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.20 E-value=0.097 Score=71.47 Aligned_cols=106 Identities=20% Similarity=0.340 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHhHHHHHhhhhhHH
Q 000217 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE---KEAAVVKYEECSRMISALEDKLLHSEE 391 (1849)
Q Consensus 315 QykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eE---KEa~~lqyqQcLe~IS~LE~kI~~aee 391 (1849)
.|...++.|-.+..-.+ .+++.+++++..+..- ++...+..++|+.+|+.-..++...+.
T Consensus 182 ky~KAld~~kk~rkd~~-----------------~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~ 244 (1294)
T KOG0962|consen 182 KYTKALDSLKKLRKDQS-----------------QEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELEN 244 (1294)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777787766655444 4666666666666544 444556688898888887777666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 392 DSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE 455 (1849)
Q Consensus 392 ~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~E 455 (1849)
.+.....+++.++..+.++.+ ....+..|+.++.....++.++...
T Consensus 245 e~~~~~~~i~ei~~~~~el~k------------------~~~~~~~l~~e~~~l~~~~~~l~~~ 290 (1294)
T KOG0962|consen 245 ELGPIEAKIEEIEKSLKELEK------------------LLKQVKLLDSEHKNLKKQISRLREK 290 (1294)
T ss_pred HhhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666655555555544444 4444555555555555555555443
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.072 Score=69.25 Aligned_cols=183 Identities=23% Similarity=0.314 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHH
Q 000217 625 YCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIME----KLLEKNAVL 700 (1849)
Q Consensus 625 ~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~me----kLlEkns~L 700 (1849)
..+++++..+++-|-++...+. +.+..+.+.|+.|+.|-..+..-.+..-+|....-.+. -|+++...|
T Consensus 436 ~~~~e~Lqk~~~~~k~ll~e~~-------t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l 508 (698)
T KOG0978|consen 436 EELSEELQKKEKNFKCLLSEME-------TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKL 508 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788877777776665 45788999999999999999988888777777665432 366667777
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000217 701 ENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1849)
Q Consensus 701 E~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K 780 (1849)
+.-+..+++--+-+-.+++.||+-...|..- ...+..++-..+..|+.+-.+-..+..++.+++.+++..-.+
T Consensus 509 ~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~-------~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~ 581 (698)
T KOG0978|consen 509 EEQILTLKASVDKLELKIGKLEEQERGLTSN-------ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK 581 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766665544 445556666777888888899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhH
Q 000217 781 SKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEE 835 (1849)
Q Consensus 781 ~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~ 835 (1849)
+++++..+... ..+ |+......+.++.+++.|-.++..+..
T Consensus 582 le~i~~~~~e~-------~~e-------le~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 582 LEQIQEQYAEL-------ELE-------LEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998887 333 344444445555555555555544443
No 47
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.16 E-value=3.1e-06 Score=110.15 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHH
Q 000217 650 LNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682 (1849)
Q Consensus 650 ~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~ 682 (1849)
..|+.+...+..||..+..|.+.+.....+-..
T Consensus 336 ~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~ 368 (722)
T PF05557_consen 336 DSPEDLARALVQLQQENASLTEKLGSLQSELRE 368 (722)
T ss_dssp ---------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 457777777888888887777777666554443
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.15 E-value=0.14 Score=71.38 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=70.9
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000217 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1849)
Q Consensus 703 SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k 782 (1849)
||.++...|+.+-. ...+...+.|-.+++.+...+..+.++...+|..+...+..++.++..+.
T Consensus 582 slyGl~LdL~~I~~----------------pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 645 (1201)
T PF12128_consen 582 SLYGLSLDLSAIDV----------------PDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT 645 (1201)
T ss_pred ccceeEeehhhcCC----------------chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666631 22333334555555555555666666666666666666666666666665
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHH
Q 000217 783 SLEDSCLLLDNEKSCLITERVNLVSQLDIARK-GLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLD 852 (1849)
Q Consensus 783 ~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~-~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~ 852 (1849)
.++-.+.....+...+..++..+..++..... +...++.+.+.+......+..+++.....+..-...+.
T Consensus 646 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~ 716 (1201)
T PF12128_consen 646 QAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELR 716 (1201)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444455555555444443322 22334555555555555555555555554444444333
No 49
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.14 E-value=0.017 Score=75.45 Aligned_cols=388 Identities=21% Similarity=0.249 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 000217 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475 (1849)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~ 475 (1849)
+..+|..++.++..++..+.....+++.+...++.+......+|.+..+..++++-++.-=..+.+-..++|+.+..|.+
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556667777777777777777788888777777777777777777666666665554444444445556666666665
Q ss_pred hhHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhccCHHHHHHHHHHH
Q 000217 476 SNQTL---HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFV-----EAETAFQTLQHLHSQSQDELRSLAAEL 547 (1849)
Q Consensus 476 ~~q~L---~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~-----EaE~aL~~Le~LhSqSQeE~~~L~~Ei 547 (1849)
.++.| |.|.+.+.+.+ .....|++-|+..+++- .+.. +-|.||.+|+..- +.-.+|.-|+
T Consensus 112 qvs~Lk~sQvefE~~Khei-------~rl~Ee~~~l~~qlee~-~rLk~iae~qleEALesl~~ER----eqk~~LrkEL 179 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEI-------KRLEEEIELLNSQLEEA-ARLKEIAEKQLEEALESLKSER----EQKNALRKEL 179 (717)
T ss_pred HHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 55555 34555554444 44445566666555552 1111 2445555543322 3344555555
Q ss_pred HHHHH-----HHHHHhhhhHHH--HHHHHHHHHHh------h-----c--cc----------c---cccch-HHHHHHH-
Q 000217 548 QNRAQ-----ILKDMGTRNQSL--QEEVEKVKEEN------K-----G--LN----------E---LNLSS-AESIKNL- 592 (1849)
Q Consensus 548 ~~~~~-----~L~~lE~~~~~L--~~ev~~~kEEn------~-----~--Ln----------e---~n~SS-~~sIk~L- 592 (1849)
..... -+.++.....++ -.+.....+.+ . + +. | -+++- -..+-+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLf 259 (717)
T PF09730_consen 180 DQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLF 259 (717)
T ss_pred HHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhh
Confidence 43221 012222211111 00000000000 0 0 00 0 00000 0012333
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhh
Q 000217 593 ----QDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668 (1849)
Q Consensus 593 ----QdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~ 668 (1849)
=.||.+|+.-..-+|+|...-+..-..+|..+-+-+.++.....+...+.++|..+.---. -++.+.....
T Consensus 260 SEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~-----~ke~~~~~d~ 334 (717)
T PF09730_consen 260 SELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQE-----DKEQQSAEDS 334 (717)
T ss_pred hhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----chhhhhhhhc
Confidence 2456666666666666555444444445555544445545444444455555543321000 0000111011
Q ss_pred hHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhh
Q 000217 669 LKEVYERDRCEKVALLEKLE--IMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQL 746 (1849)
Q Consensus 669 Lke~~s~~~~EK~~L~~kLq--~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQL 746 (1849)
.++..+... ...-.+. ..+-|--++........++..||..||.+...++..+ .. ++..+-+.+
T Consensus 335 ~~~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---~~-------ek~~~~~e~ 400 (717)
T PF09730_consen 335 EKERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY---KQ-------EKDRLESEV 400 (717)
T ss_pred ccccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHH
Confidence 111111100 0001111 1223334555566666677777777777777777622 22 334444444
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHH
Q 000217 747 QDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARK 814 (1849)
Q Consensus 747 q~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~ 814 (1849)
+.+...+..+..-.-.=...+.++++++-.++.-..+...++.+-.++...+..+++.|..+|...+.
T Consensus 401 q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNg 468 (717)
T PF09730_consen 401 QNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNG 468 (717)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44444444433322222447888888998999999999999999999999999999999999988654
No 50
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.11 Score=68.81 Aligned_cols=174 Identities=20% Similarity=0.140 Sum_probs=112.3
Q ss_pred hhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHH
Q 000217 861 FVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIH 940 (1849)
Q Consensus 861 ~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIs 940 (1849)
...+++.++-.++.+++.|..+.-.+...+-...+....+|-++-...+.+-+.-..=-.++.+|++.+-+.....-=+.
T Consensus 830 e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~k 909 (1174)
T KOG0933|consen 830 EISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERK 909 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHH
Confidence 34556666667777777777777777777766666677777777777777777666666678889998888766666678
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhH
Q 000217 941 KLENENCEQQEEMRSLVDQIKVLRVQLY------QLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKAL 1014 (1849)
Q Consensus 941 eLe~E~~~~q~e~~~Ll~~i~~Lr~gi~------qvl~~L~i~~~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q 1014 (1849)
.|+++....+.+-....-.+++|...+- +.+..=+-+-|..+.| ....-.+|..|+.-+..++
T Consensus 910 kle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~-----------p~~are~l~~Lq~k~~~l~ 978 (1174)
T KOG0933|consen 910 KLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD-----------PHEAREELKKLQEKKEKLE 978 (1174)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC-----------HhHHHHHHHHhhHHHHHHH
Confidence 8888888888888888777777765433 2222222222333222 1222233555555554444
Q ss_pred h-hhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 000217 1015 E-QNHQVVIENSILVALLGQLKLEAENLATERNALAEEF 1052 (1849)
Q Consensus 1015 ~-en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~ 1052 (1849)
. .|-+ .+.+|.--.....+|.+-+++++.+.
T Consensus 979 k~vn~~-------~m~mle~~E~~~~~lk~k~~~Ie~Dk 1010 (1174)
T KOG0933|consen 979 KTVNPK-------NMDMLERAEEKEAALKTKKEIIEKDK 1010 (1174)
T ss_pred hhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3 2333 45566677778888888888888874
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.10 E-value=0.093 Score=67.67 Aligned_cols=325 Identities=16% Similarity=0.223 Sum_probs=143.9
Q ss_pred HHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 375 CSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHS 454 (1849)
Q Consensus 375 cLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~ 454 (1849)
+...+...+..+..|++.+.+.+-. .+...+..+...|...++..+.+...++++...=..--.++.+.....+.|+.
T Consensus 77 ~~~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 77 VTNSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK 154 (569)
T ss_pred HHhhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888887665542 33333333333333333333333333333322222222222222222222222
Q ss_pred H-----------HHhhhhhhhhHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000217 455 E-----------LDNGFAKLKGAEEKCLLLERSN-QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER-LRFVE 521 (1849)
Q Consensus 455 E-----------ie~~~~kLk~lE~~~~~LE~~~-q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~-~k~~E 521 (1849)
. ++....+|..+|..+...+.-. .+=+.++.....++......|...-.+|=.|-..++.+. ..+-+
T Consensus 155 ~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~e 234 (569)
T PRK04778 155 SLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQE 234 (569)
T ss_pred HHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2 3334444444444433332111 122445555555555555566666666655544444432 33333
Q ss_pred HHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHH
Q 000217 522 AETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601 (1849)
Q Consensus 522 aE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE 601 (1849)
-..+...|..-+=.. .-.+++.....|++.+......+.+|.-..... .+..+++.|..|-+
T Consensus 235 l~~gy~~m~~~gy~~----------------~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~--~~~~i~~~Id~Lyd 296 (569)
T PRK04778 235 LKAGYRELVEEGYHL----------------DHLDIEKEIQDLKEQIDENLALLEELDLDEAEE--KNEEIQERIDQLYD 296 (569)
T ss_pred HHHHHHHHHHcCCCC----------------CCCChHHHHHHHHHHHHHHHHHHHhcChHHHHH--HHHHHHHHHHHHHH
Confidence 333333332110000 001234445555555555555555554443332 56666666666666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------CcchhhhHHHHHHHhhhhHH
Q 000217 602 TIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN----------PENFGLSVKELQDENSKLKE 671 (1849)
Q Consensus 602 ~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~----------~e~~~~~vkeLQ~~n~~Lke 671 (1849)
+.++ .+..+.........+.+.+..+...+..+..++..|+-+ ...+...+++++.....+.+
T Consensus 297 ~lek-------E~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 297 ILER-------EVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred HHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 333444444444444444444444444554545444333 12222333333333333333
Q ss_pred HHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 000217 672 VYERDRCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLA 730 (1849)
Q Consensus 672 ~~s~~~~EK~~L~~kLq~-mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~ 730 (1849)
.+...... .+.++. ++.+.++..-+++........+.+||..-....+....+..
T Consensus 370 ~i~~~~~~----ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 370 RIAEQEIA----YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred HHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 333333 44455555555555555555555555544444444433333
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.08 E-value=0.019 Score=74.51 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 000217 1395 INQLKEKANALECENGGLKAHLAA 1418 (1849)
Q Consensus 1395 i~~Lker~~~le~En~~lk~~l~~ 1418 (1849)
.+.|+..+..+|.++..||.+|+.
T Consensus 1028 mdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1028 MDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhh
Confidence 467788888888888888888753
No 53
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.07 E-value=0.0016 Score=74.81 Aligned_cols=156 Identities=28% Similarity=0.345 Sum_probs=105.7
Q ss_pred HHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 000217 277 AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356 (1849)
Q Consensus 277 aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKq 356 (1849)
++..+.....++..|+.++.+|...+..++...+.+--.+..-..+|...+.....++.-.+.+..|....+..+..|..
T Consensus 20 ~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~ 99 (237)
T PF00261_consen 20 AEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQ 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333344556778888888888888888877777766677888888888888888888888888888888888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000217 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAIS 436 (1849)
Q Consensus 357 el~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~ 436 (1849)
.|.....-.+.+--.|..+-.++..++..+..++ .+++.++..+..|...+..+.....++.....+...+..
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-------eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~ 172 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-------ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED 172 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 8888877777776667776666666666655555 445555555555555444444444444333333333333
Q ss_pred HHH
Q 000217 437 ILE 439 (1849)
Q Consensus 437 ~LE 439 (1849)
.++
T Consensus 173 ~~e 175 (237)
T PF00261_consen 173 EYE 175 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 54
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.04 E-value=0.12 Score=66.41 Aligned_cols=415 Identities=22% Similarity=0.285 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 435 I~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
|...|..--++.....-|...+.....++.+++.. .+.+.......++.+...+.+|-+++..|.-.+++
T Consensus 196 i~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leee----------y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~e 265 (786)
T PF05483_consen 196 IAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEE----------YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQE 265 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 33444444455555555555666666777766644 33344444444555555666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccch---------
Q 000217 515 ERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSS--------- 585 (1849)
Q Consensus 515 E~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS--------- 585 (1849)
=..++-+-+.+-....-+...|+.+..+|..+++.-..-+...+.....|+.++..+...+-.|++..-+.
T Consensus 266 s~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~ 345 (786)
T PF05483_consen 266 SQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKA 345 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666665555555667889999999999998777777777777777777777655555544433111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHH
Q 000217 586 --AESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQ 663 (1849)
Q Consensus 586 --~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ 663 (1849)
+..|.+++.-+.+|++. |.-+..+++. ...++ .....+||
T Consensus 346 ~~s~~v~e~qtti~~L~~l-----------------L~~Eqqr~~~-----------~ed~l----------k~l~~eLq 387 (786)
T PF05483_consen 346 QHSFVVTELQTTICNLKEL-----------------LTTEQQRLKK-----------NEDQL----------KILTMELQ 387 (786)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH-----------hHHHH----------HHHHHHHH
Confidence 01222223333333222 1112222211 11111 22344555
Q ss_pred HHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHh---hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Q 000217 664 DENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNA-------VLE---NSLSDLNVELEGVRDKVKALEEVCQNLLAEKS 733 (1849)
Q Consensus 664 ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns-------~LE---~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs 733 (1849)
..+..|.+...- ..-|. -+|+.+.+.|.+++ .+| .+|-....+|-|+
T Consensus 388 kks~eleEmtk~-k~~ke---~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l------------------- 444 (786)
T PF05483_consen 388 KKSSELEEMTKQ-KNNKE---VELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL------------------- 444 (786)
T ss_pred HhhHHHHHHHHH-hhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 555555433211 11111 11223333332222 221 1222222222221
Q ss_pred HhHhhHHHHHhhhHHHHHHHHhhhhhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 734 TLVAEKNSLFSQLQDVNENLKKLSDENNFL-------VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLV 806 (1849)
Q Consensus 734 ~L~sEk~~LvSQLq~~~~~l~~L~Ekns~L-------E~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~ 806 (1849)
|++....+.+|....+.. -..+-++++|++.-..|..+|=..|..+.-++..+.-+...+.
T Consensus 445 ------------lq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~ 512 (786)
T PF05483_consen 445 ------------LQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMA 512 (786)
T ss_pred ------------HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222222221111 1233456667776677777888899999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHH-------HHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhH
Q 000217 807 SQLDIARKGLKDLEKSYA-------ELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFL 879 (1849)
Q Consensus 807 sQl~~~~~~l~~lek~~~-------ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~L 879 (1849)
..+..+++.+.+.+++-. .|+..-..+..|.++...++......+...-.+...-.++-++.+...+.++..|
T Consensus 513 ~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~l 592 (786)
T PF05483_consen 513 LELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKIL 592 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHH
Confidence 888888888888665443 3444444444455555555555555444444445555667778888888888888
Q ss_pred HHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhh
Q 000217 880 QEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENEN 946 (1849)
Q Consensus 880 qEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe~E~ 946 (1849)
..++...++..+ ---+||.+|...|=+|=-..=.-..-+.+.+.-|+.|+.|.
T Consensus 593 enk~~~LrKqvE--------------nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~ 645 (786)
T PF05483_consen 593 ENKCNNLRKQVE--------------NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEEL 645 (786)
T ss_pred HHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766655433 22577777777776654332222222344566666665444
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.02 E-value=0.0017 Score=74.56 Aligned_cols=200 Identities=25% Similarity=0.338 Sum_probs=150.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHH
Q 000217 228 ESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET 307 (1849)
Q Consensus 228 ~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ 307 (1849)
...|+..|+.++..|+.-|..|..+=+.+--.+..-..|+..++....+.....+.|..|....+.-+..|...+.....
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999988888888888888887777
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 000217 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLL 387 (1849)
Q Consensus 308 ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~ 387 (1849)
.-+.+--.|..+.-++..++..+..+.+.+.....++...+.++..+.+.+-.++ ..-.+..++...++.+|.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE-------~~~~~~~~re~~~e~~i~ 179 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLE-------ASEEKASEREDEYEEKIR 179 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh-------hhhhhhhHHHHHHHHHHH
Confidence 7666766777777788777777777666665555555555555555555544443 222334466677777777
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000217 388 HSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEA 434 (1849)
Q Consensus 388 ~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~k 434 (1849)
.+...+.....+++.++..+..|...|..|+.+.......|..+...
T Consensus 180 ~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 180 DLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666666666655555544433
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.00 E-value=0.021 Score=72.41 Aligned_cols=329 Identities=19% Similarity=0.276 Sum_probs=175.9
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhH--------hhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000217 243 KNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQ--------ASIAEAEVQTLKEALARLETEREANIR 314 (1849)
Q Consensus 243 kk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~er--------a~~ae~E~~sLk~~la~L~~ekea~ll 314 (1849)
|+.|..|+. =+-.| ++|.-.||.|=+.++-++.-|... ..+=+.|+.++.-.+..-..++.....
T Consensus 41 K~El~~LND----RLA~Y---IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ 113 (546)
T KOG0977|consen 41 KKELQELND----RLAVY---IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEI 113 (546)
T ss_pred HHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666665 34456 899999999999999888777543 234566777777777655555444444
Q ss_pred HHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhH----
Q 000217 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSE---- 390 (1849)
Q Consensus 315 QykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~ae---- 390 (1849)
.+..|.+-+..|..++..++..+.+..+.+ ... +..|+.++.++..+.
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~-------~~~---------------------~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKL-------DDY---------------------LSRLSELEAEINTLKRRIK 165 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHH-------HHH---------------------hhhhhhhhhHHHHHHHHHH
Confidence 455555555555555554444443332221 111 122222222222222
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhH
Q 000217 391 ---EDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARA-EEEAQRLHSELDNGFAKLKGA 466 (1849)
Q Consensus 391 ---e~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~s-QeEv~RL~~Eie~~~~kLk~l 466 (1849)
++..+|..+..++..++..++..+.+=.--.-.++.+.+.+++.|.-+...+++- .++......+.-....
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r----- 240 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNR----- 240 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccch-----
Confidence 2222222222233333333333222222222223333344444444444433321 1222222222210000
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHH
Q 000217 467 EEKCLLLERSNQTLHSELESMVQKMGSQSQELTEK-QKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAA 545 (1849)
Q Consensus 467 E~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek-~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~ 545 (1849)
+.=-..|-..+..+..+.+...+.. -++++.+ +..|..++. +-.......-...||+.++..
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~~~n---R~diE~~Y~~kI~~i~~--------------~~~~~~~~~~~~rEEl~~~R~ 303 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAISRQN---RKDIESWYKRKIQEIRT--------------SAERANVEQNYAREELRRIRS 303 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHh--------------hhccccchhHHHHHHHHHHHh
Confidence 0001124444555555555542221 1122222 223333331 111111222334699999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000217 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIY 625 (1849)
Q Consensus 546 Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~ 625 (1849)
.|...-..|.+++.++.+|...|..+ +.-|.+-.-++..++-+...++..+++-|..+-.|+.--+|-|-+|+-||.
T Consensus 304 ~i~~Lr~klselE~~n~~L~~~I~dL---~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~ 380 (546)
T KOG0977|consen 304 RISGLRAKLSELESRNSALEKRIEDL---EYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIA 380 (546)
T ss_pred cccchhhhhccccccChhHHHHHHHH---HhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHH
Confidence 99999999999999999999999988 334445555667789999999999999999999999977888888888885
Q ss_pred HHHHHH
Q 000217 626 CLKEEL 631 (1849)
Q Consensus 626 ~lkee~ 631 (1849)
.-..=+
T Consensus 381 ~YRkLL 386 (546)
T KOG0977|consen 381 AYRKLL 386 (546)
T ss_pred HHHHHh
Confidence 544433
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.97 E-value=0.15 Score=65.73 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhhhhh-------hhhhhHhHHHHHH----HHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhh
Q 000217 690 MEKLLEKNAVLENSLSD-------LNVELEGVRDKVK----ALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSD 758 (1849)
Q Consensus 690 mekLlEkns~LE~SLSd-------~n~ELegLR~K~k----~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~E 758 (1849)
|-.+--+|+.|...+|+ ++-+|+.++.... +.+++-+-|..+.-.|..+++.+--.|-...-+.+-+.+
T Consensus 272 m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfdd 351 (1265)
T KOG0976|consen 272 MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDD 351 (1265)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 33344456666666654 5666777776554 466666677777777777777776666666667777788
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000217 759 ENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCL 798 (1849)
Q Consensus 759 kns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l 798 (1849)
|...||....++-...-+++.+.+-.|+..++|...-+.+
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aer 391 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAER 391 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887777774433333
No 58
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.89 E-value=5.3e-06 Score=107.84 Aligned_cols=146 Identities=27% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERL 517 (1849)
Q Consensus 438 LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~ 517 (1849)
++..+...-..+.++..+-+.+.++..+++.....|..++..|+.+...+...+.... .+..+
T Consensus 170 ~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~--------------~~~~~--- 232 (713)
T PF05622_consen 170 LDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLE--------------GSSEE--- 232 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCC--------------CCCCC---
Confidence 3444444455666666666666666666555555555555555555544422221111 00000
Q ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHH
Q 000217 518 RFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL 597 (1849)
Q Consensus 518 k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~ 597 (1849)
.-..+..-++..+..++.|..|+..+...+.+.......++.+|..++.+|..|... +...+.|+||++
T Consensus 233 -------~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~----A~~a~~LrDElD 301 (713)
T PF05622_consen 233 -------PSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAE----AREARALRDELD 301 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHH
Confidence 011111223344566777777777666666667766777777777777777666554 347899999999
Q ss_pred HHHHHHHH---HHHHHH
Q 000217 598 SLRETIGK---LEAEVE 611 (1849)
Q Consensus 598 ~LKE~~~k---lE~Ev~ 611 (1849)
.|++.-.+ +|.+|.
T Consensus 302 ~lR~~a~r~~klE~~ve 318 (713)
T PF05622_consen 302 ELREKADRADKLENEVE 318 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99986554 555554
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.88 E-value=0.2 Score=64.12 Aligned_cols=198 Identities=21% Similarity=0.271 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHH
Q 000217 433 EAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ-KMGSQSQELTEKQKELGRLWTC 511 (1849)
Q Consensus 433 ~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~q-k~~~~~qEL~ek~~Ei~~L~~s 511 (1849)
.....++..+-+++.++.+|+.++ ...++++.....--..+..|+.++..... ++.. +. ........++..
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~---~~-~~~~~~~~~~~~ 282 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEE---EA-EAKEKSSELQSS 282 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hH-HhhhhhhhHHHH
Confidence 455677777888888888888877 22233333322222334455555544432 1111 00 111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHhhcccccccc
Q 000217 512 IQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI-------LKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1849)
Q Consensus 512 iqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~-------L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~S 584 (1849)
+..-...+-++...|.....--+..+..+.+|..||..-... ..........|+.++..++-++.......--
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 222222222223333333333333334555555555544443 4444556667777777777776555333211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 585 SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645 (1849)
Q Consensus 585 S~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql 645 (1849)
+- +....+.-....+-.|......+-...+.++.+++.+++........+...+
T Consensus 363 ~k-------~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 363 AK-------EAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred hh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222222233333333344455555566666666655544444443333
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.87 E-value=0.43 Score=67.53 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 000217 539 ELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRN 618 (1849)
Q Consensus 539 E~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~ 618 (1849)
+.+.++.-+...-..|.+++.+...-+.-...+.+-++.+ .....+...+..|+. .+-...+.++.++...+..+.
T Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 582 (1486)
T PRK04863 507 EQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRL-GKNLDDEDELEQLQE---ELEARLESLSESVSEARERRM 582 (1486)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555553332222222222222222 223343444444444 344444566666776777889
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHhh-cCCCCcc---hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q 000217 619 ALQQEIYCLKEELNELNKKH------QAMVEQVES-VSLNPEN---FGLSVKELQDENSKLKEVYERDRCEKVALLEKLE 688 (1849)
Q Consensus 619 aLqqel~~lkee~~~Ln~k~------~~l~eql~~-l~~~~e~---~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq 688 (1849)
.+++.+..+...|..+...+ +...+.|.. .|...++ ....+..+.+.--.+..........+..|-.+..
T Consensus 583 ~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~ 662 (1486)
T PRK04863 583 ALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIE 662 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888754 222333332 2322222 2333333333334444444444455554444444
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.87 E-value=0.016 Score=68.49 Aligned_cols=295 Identities=23% Similarity=0.280 Sum_probs=140.0
Q ss_pred HHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 000217 573 EENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV-DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN 651 (1849)
Q Consensus 573 EEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v-~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~ 651 (1849)
++..+||..=-+...-|+-|..+|..|..-+..+..-.+..+ +-+.....++..++..++.+......+.-++..+
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l--- 80 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL--- 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH---
Confidence 334444444333444555555555555554444444333222 2355566666666666665555555444444322
Q ss_pred CcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Q 000217 652 PENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAE 731 (1849)
Q Consensus 652 ~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~E 731 (1849)
+.-+.+++..+... ...+..++.-+..+..+++.....-.+|+.-++.|.++
T Consensus 81 ----~~e~~~~r~k~e~e------------------------~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 81 ----KEELEDLRRKYEEE------------------------LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp ----HHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH------------------------HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 11122222111111 22333444444444455555555555555555555555
Q ss_pred hhH----hHhhHHHHHhhhH-HHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHHHHHHH
Q 000217 732 KST----LVAEKNSLFSQLQ-DVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK-SLEDSCLLLDNEKSCLITERVNL 805 (1849)
Q Consensus 732 Ks~----L~sEk~~LvSQLq-~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k-~lEes~~~l~~e~s~l~~Ek~~L 805 (1849)
..- |..|...|-.++. .++..+. .-..+.|...+.++.++.+..-.+.+ +++.. +...-..+......-
T Consensus 133 l~fl~~~heeEi~~L~~~~~~~~~~e~~--~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~---y~~k~~~l~~~~~~~ 207 (312)
T PF00038_consen 133 LEFLKQNHEEEIEELREQIQSSVTVEVD--QFRSSDLSAALREIRAQYEEIAQKNREELEEW---YQSKLEELRQQSEKS 207 (312)
T ss_dssp HHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhccccccceeec--ccccccchhhhhhHHHHHHHHHhhhhhhhhhh---ccccccccccccccc
Confidence 433 4455666666664 2211111 12334566666666666655544444 22222 222223333333334
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhh
Q 000217 806 VSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLC 885 (1849)
Q Consensus 806 ~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~ 885 (1849)
...+..+...+..+...+..+..+..+++..+...-..|..+...+..+ .......|+.+|.++..++.....
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~-------~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE-------REEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH-------HHHHHHhhhccchhHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555544 444466788888888888888888
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHH
Q 000217 886 RKKAYEEELDKALDAQIEIFITQKY 910 (1849)
Q Consensus 886 ~~~~~eeE~dk~~~aqiei~ilqk~ 910 (1849)
...+|++=+|-=+.=.+||-.-.+.
T Consensus 281 ~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 281 QLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888887666555445555444433
No 62
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.37 Score=65.42 Aligned_cols=55 Identities=15% Similarity=-0.056 Sum_probs=25.7
Q ss_pred chhhhHhhhhccchhhhccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhH
Q 000217 206 DAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQY 260 (1849)
Q Consensus 206 ~~~~~~s~l~~e~~~~~~~~~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY 260 (1849)
.+||++..+......-+..++...-....-+.=...++..+..++...+....++
T Consensus 140 l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~ 194 (908)
T COG0419 140 LPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQL 194 (908)
T ss_pred eccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588777766555443344333332223333334444444444544444443333
No 63
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.32 Score=62.91 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=22.3
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l 361 (1849)
+-.+...++.++.++.-...++...+..+..+.+++.+-
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~ 198 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQ 198 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666666666666655555544
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.76 E-value=0.11 Score=61.54 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHH
Q 000217 799 ITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKES 839 (1849)
Q Consensus 799 ~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~ 839 (1849)
......+..+|..+...+...-.+|.+|.+--..|..|+..
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIat 301 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIAT 301 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555666666777777777777777777777777777743
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.66 E-value=0.61 Score=63.02 Aligned_cols=201 Identities=18% Similarity=0.296 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHhHHHHHhhhHH
Q 000217 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR-----QYQQCLDKLSNMEKNISRAEA 335 (1849)
Q Consensus 261 ~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~ll-----QykqClEkis~LE~~~s~aqe 335 (1849)
.+-.+.+..|+++|.++++....+. .++.+.+.+-+|.++.--+.+ ||+-|.+.|...+.+....++
T Consensus 231 ~~~~e~i~~l~k~i~e~~e~~~~~~--------~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ 302 (1074)
T KOG0250|consen 231 DLKEEEIKNLKKKIKEEEEKLDNLE--------QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQE 302 (1074)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665555433322 244445555555544433333 566777777777766666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 336 DAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALG 415 (1849)
Q Consensus 336 eak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~ 415 (1849)
..+.....+..+..........++.+..|-++---.++..-.....+-.++..+++..+..-..+..+...++.+++.|.
T Consensus 303 ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 303 KIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555554444444444444332222111111111222223333333333333333334445555555555555
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 416 KLTEEK-EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 416 kL~Eek-eal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
.++++. ..+..+..+..+++..|+.++-..++.+.+|..|.+....++..-++.
T Consensus 383 ~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 383 DLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555444 556666666666666666666666666666666666555555554443
No 66
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.61 E-value=0.39 Score=63.24 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHH
Q 000217 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLE 306 (1849)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~ 306 (1849)
.++.-|..+.-++..+.+..++...-- -.++...+.++..++.+...-.--+.++-.+.+-|+..++++.
T Consensus 330 ~~~~~~~~~~~e~~~~~~~l~~~~~ea---r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~ 399 (980)
T KOG0980|consen 330 PRELQIEQLSREVAQLKAQLENLKEEA---RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLL 399 (980)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666554333221 1233333334443333321111124444455556666665544
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.54 E-value=0.63 Score=60.24 Aligned_cols=381 Identities=20% Similarity=0.269 Sum_probs=195.1
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL-------EAISILEHKLARAEEEA 449 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~-------~kI~~LE~elS~sQeEv 449 (1849)
..+..++..+..|++.+.+.+-. ++...+..+.+.|..+++....+...+..+. ..|..+...+.+....+
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~--ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFK--KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777665444432 3333333333333333333333333333322 22223333222222222
Q ss_pred HHHHH----HHHhhhhhhhhHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 450 QRLHS----ELDNGFAKLKGAEEKCLLLERSNQ-TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAET 524 (1849)
Q Consensus 450 ~RL~~----Eie~~~~kLk~lE~~~~~LE~~~q-~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~ 524 (1849)
-.-+. =++....+|.++|..+...+.-.. +=+.++..+..++......|.+....|=.|-..++.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~---------- 222 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQK---------- 222 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------
Confidence 21111 134444455555554444322221 234455555555555555555555555554443333
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHH
Q 000217 525 AFQTLQHLHSQSQDELRSLAAELQNRAQIL---------KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDE 595 (1849)
Q Consensus 525 aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L---------~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdE 595 (1849)
.-++.+.-|. .....+ .++......+.+.+......+..|+-.... ..+..++++
T Consensus 223 ----------~~P~ql~eL~----~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~--~~~~~i~~~ 286 (560)
T PF06160_consen 223 ----------EFPDQLEELK----EGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVE--EENEEIEER 286 (560)
T ss_pred ----------HhHHHHHHHH----HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHH
Confidence 2223333222 222211 234555666666666666666555544333 377888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc---chhhhHHHHHHHhhhhHHH
Q 000217 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPE---NFGLSVKELQDENSKLKEV 672 (1849)
Q Consensus 596 i~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e---~~~~~vkeLQ~~n~~Lke~ 672 (1849)
|..|-++.++ .+..|......+..+.+-+..+...+..+...+.-++-+-. .--..++.++.....|...
T Consensus 287 Id~lYd~le~-------E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 287 IDQLYDILEK-------EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 8888876665 44466666666666666666666666666666655433221 2224555555555544444
Q ss_pred HHHhH---HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhH--hhHHHHHhhh
Q 000217 673 YERDR---CEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLV--AEKNSLFSQL 746 (1849)
Q Consensus 673 ~s~~~---~EK~~L~~kLq~-mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~--sEk~~LvSQL 746 (1849)
..... .++..-.+.++. ++.+.+....++...-+.+..|.+||..-+.-.+....++...+... -+|..|=.==
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 33322 334445555554 67777777888888888888888888877776666666666665542 2333331111
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 000217 747 QDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLD 792 (1849)
Q Consensus 747 q~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~ 792 (1849)
+..-.-+.........|-..|......++..-..+.........+.
T Consensus 440 ~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~ 485 (560)
T PF06160_consen 440 EDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLE 485 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 2222233334444455555666666666666666666666555553
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.53 E-value=0.91 Score=61.83 Aligned_cols=51 Identities=29% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHH
Q 000217 699 VLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV 749 (1849)
Q Consensus 699 ~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~ 749 (1849)
.+++.+...+.+++-|+--++.-.++-+.+...+.-+..+...|-++|+..
T Consensus 718 k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe 768 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQE 768 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 567888888999999988888887888888888888888888888888865
No 69
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.93 Score=61.74 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 000217 901 QIEIFITQKYIQDLKEKNFSLL 922 (1849)
Q Consensus 901 qiei~ilqk~i~Dle~kN~~ll 922 (1849)
.+.++++++.++.+.......|
T Consensus 756 ~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 756 GLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766664443333
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.53 E-value=0.75 Score=60.68 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q 000217 242 LKNALAKLEAEKEAGLLQYRQSLERLSNLES 272 (1849)
Q Consensus 242 Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~ 272 (1849)
|+..+..|--.-|+...+-...-.|+-+||+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elek 259 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEK 259 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7777777776667787777777777766654
No 71
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.49 E-value=0.5 Score=60.68 Aligned_cols=202 Identities=20% Similarity=0.274 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 000217 416 KLTEEKEALALQYQQCLEAISILEHKLA------------------RAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1849)
Q Consensus 416 kL~Eekeal~l~~qq~~~kI~~LE~elS------------------~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~ 477 (1849)
.|......++.++.....+|.+|+..+- -.+++++-+-.+++..+.++-++|..|..|..+.
T Consensus 186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql 265 (629)
T KOG0963|consen 186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQL 265 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666644433 3445555556667777888888887777765444
Q ss_pred HHHHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Q 000217 478 QTLHSE--------LESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQN 549 (1849)
Q Consensus 478 q~L~~E--------~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~ 549 (1849)
....+. .+.....+...+.++.+.-++|++++.++.++...+...-.+|-. ++++..-+|..
T Consensus 266 ~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~----------~l~~~~~~lee 335 (629)
T KOG0963|consen 266 AKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEK----------ELKAKISELEE 335 (629)
T ss_pred HhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 433322 233334555567777777777777777777766655544444433 23333333333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccc-------------hHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 550 RAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS-------------SAE-----SIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 550 ~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~S-------------S~~-----sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
....|+.- .+...+|.|...|-...|+ +.. --+.||.|+..|+-....+..++.
T Consensus 336 l~~kL~~~--------sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~ 407 (629)
T KOG0963|consen 336 LKEKLNSR--------SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRIT 407 (629)
T ss_pred HHHHHhhh--------ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHH
Confidence 33333222 3344444444444333333 111 235678888888766655555333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 612 LRVDQRNALQQEIYCLKEELNELN 635 (1849)
Q Consensus 612 ~~v~ek~aLqqel~~lkee~~~Ln 635 (1849)
...-.=..|.+....+++=+.+|.
T Consensus 408 ~~~~~~~el~~~~~~~ke~i~klE 431 (629)
T KOG0963|consen 408 ELSKKGEELEAKATEQKELIAKLE 431 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHH
Confidence 222222333344444444444444
No 72
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.47 E-value=2.6e-05 Score=101.50 Aligned_cols=72 Identities=26% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
...+..|...|..+.+.+..++.++ ..-|.+.++-|+.|+|++..+...|.-|...+.........||.+++
T Consensus 575 ~~ki~~Le~~L~~k~~e~~~~eer~---k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e 646 (713)
T PF05622_consen 575 SQKIEELEEALQKKEEEMRAMEERY---KKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELE 646 (713)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHH---HHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666667777666666666554 35577888889999999776667788888888877777777777665
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.76 Score=58.63 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=34.2
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhh
Q 000217 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVE 710 (1849)
Q Consensus 657 ~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~-mekLlEkns~LE~SLSd~n~E 710 (1849)
..-..++.....|.+.......|+..+..+|.. +.-.+.=......+|.++.+.
T Consensus 514 ~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~ 568 (581)
T KOG0995|consen 514 EAEELVKSIELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKAD 568 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888888888888888888885 333444444455555555443
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.35 E-value=1 Score=58.35 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000217 494 QSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKE 573 (1849)
Q Consensus 494 ~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kE 573 (1849)
....+......|+.|-..++.|..-+..++.....+...-...++....|..|+....+.
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s-------------------- 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS-------------------- 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 344455666777777777777766666666666665444434444444444444333322
Q ss_pred HhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 574 ENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 574 En~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
- .||+- =...++.++.++..+.+....+...+......-..++.++..+.+.+..+...+..+.+.+.
T Consensus 340 -Y-~l~~~---e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~ 407 (569)
T PRK04778 340 -Y-TLNES---ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407 (569)
T ss_pred -c-ccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111 11244455555555555555444444444444444444444444444444444444444443
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.25 E-value=0.088 Score=62.96 Aligned_cols=165 Identities=21% Similarity=0.265 Sum_probs=106.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhcccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000217 555 KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESI-KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNE 633 (1849)
Q Consensus 555 ~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sI-k~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~ 633 (1849)
..|...+.|+.--..-+.|--++ +-.+..| +.|-..|..|-+.+..++..++...+.-.-|++++ ..|+ .
T Consensus 55 ~qmtkty~Didavt~lLeEkerD-----LelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL-~~kd---e 125 (306)
T PF04849_consen 55 SQMTKTYNDIDAVTRLLEEKERD-----LELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL-SMKD---E 125 (306)
T ss_pred hhhhcchhhHHHHHHHHHHHhhh-----HHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---H
Confidence 44455555555444444332222 2333456 88888899999999999999998888888888888 3444 4
Q ss_pred HHHHHHHHHHHHhh---cC---------------CCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHH
Q 000217 634 LNKKHQAMVEQVES---VS---------------LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLL 694 (1849)
Q Consensus 634 Ln~k~~~l~eql~~---l~---------------~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~-mekLl 694 (1849)
|.+-|....+.-.. .+ ++.+.++.+++.|+++|..|+.+.+.++.|...+=++=|. |..-.
T Consensus 126 LL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv 205 (306)
T PF04849_consen 126 LLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV 205 (306)
T ss_pred HHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 44444333322221 11 2346679999999999999999999999998877666332 11111
Q ss_pred HHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHh
Q 000217 695 EKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTL 735 (1849)
Q Consensus 695 Ekns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L 735 (1849)
+-|++||..+.+|.+-+..=-+-|.....+++.|
T Consensus 206 -------~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 206 -------KQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred -------HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999998887766555444444444444333
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.21 E-value=0.089 Score=66.86 Aligned_cols=121 Identities=13% Similarity=0.207 Sum_probs=48.6
Q ss_pred HHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHhHHHHHhhhhhHHhHHHHH
Q 000217 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV--VKYEECSRMISALEDKLLHSEEDSKRIN 397 (1849)
Q Consensus 320 lEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~--lqyqQcLe~IS~LE~kI~~aee~~~~ln 397 (1849)
...+..+++.+.....+.....+.+.+++..+..++..+..+........ ..+..|-..|+..+..+..+.
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~------- 305 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIK------- 305 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHH-------
Confidence 33333333333333333333333344444444445555444443333221 112235444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1849)
Q Consensus 398 ~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~R 451 (1849)
..+..++.+++.+...+..+++..+ ++.+...++..++..+......+..
T Consensus 306 d~i~~l~~~l~~l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 306 DKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333322 3333444444444444444444333
No 77
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=1.4 Score=55.86 Aligned_cols=396 Identities=24% Similarity=0.280 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHh------HHHHHHHHHHHHHHHHHHHHHHhhHH--
Q 000217 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEED------SKRINKVADKAESEVERLKQALGKLT-- 418 (1849)
Q Consensus 347 AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~------~~~ln~~~e~~e~ev~~Lk~~i~kL~-- 418 (1849)
|+.+++.|++++.++..|-+-+. -++|...+-.+..+++. ...+....+.++.+++.+++.+++-.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t------~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~ 79 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTT------EEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ 79 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877655442 23344433333333322 12222333444444444444433211
Q ss_pred --------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHH
Q 000217 419 --------EEKEA-----LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELE 485 (1849)
Q Consensus 419 --------Eekea-----l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e 485 (1849)
++.+. ....-.-.+.+|..|++++.+...++-+-..|.+.......++-.....+|.+--.|+.|+.
T Consensus 80 hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK 159 (772)
T KOG0999|consen 80 HKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELK 159 (772)
T ss_pred HHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence 11111 11222234566666666666666666666555555544444444444444444444444444
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000217 486 SMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQ 565 (1849)
Q Consensus 486 ~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~ 565 (1849)
.. ......|..---|++.=+.++|+ .+..|..-.-.+.+|.
T Consensus 160 e~----KfRE~RllseYSELEEENIsLQK-----------------------------------qVs~LR~sQVEyEglk 200 (772)
T KOG0999|consen 160 EY----KFREARLLSEYSELEEENISLQK-----------------------------------QVSNLRQSQVEYEGLK 200 (772)
T ss_pred HH----HHHHHHHHHHHHHHHHhcchHHH-----------------------------------HHHHHhhhhhhhhHHH
Confidence 43 12222222222222222222222 2222222222344555
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHH-HHHH---HHHhhhhhHHHHHHHHHHH--HHHHHHHHHHH
Q 000217 566 EEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGK-LEAE---VELRVDQRNALQQEIYCLK--EELNELNKKHQ 639 (1849)
Q Consensus 566 ~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~k-lE~E---v~~~v~ek~aLqqel~~lk--ee~~~Ln~k~~ 639 (1849)
-+|.++.|+..-||.+ -++...||+|-++ ||.= +....+.|+||..++.+-. +.|..+|--+.
T Consensus 201 heikRleEe~elln~q-----------~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~ 269 (772)
T KOG0999|consen 201 HEIKRLEEETELLNSQ-----------LEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLF 269 (772)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhhe
Confidence 5555565555555443 2344455555443 1110 1224567888888875443 33344443333
Q ss_pred HHHHHHhhcCCCCcch-------------------hhh-----HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000217 640 AMVEQVESVSLNPENF-------------------GLS-----VKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695 (1849)
Q Consensus 640 ~l~eql~~l~~~~e~~-------------------~~~-----vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlE 695 (1849)
++...+..=|..|... ... +.....+.++|++....-..||+-|+-.|++-++.++
T Consensus 270 sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le 349 (772)
T KOG0999|consen 270 SLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLE 349 (772)
T ss_pred ecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc
Confidence 3332222222222211 122 3334455678888888888888888888888887775
Q ss_pred HHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHH--HHHhhhHhHhhHHHHHh-hhHHHHHHHHhhhhhhhhhhhhhhhhHH
Q 000217 696 KNAVLENSLSDLNVELEGVRDKVKALEEVCQN--LLAEKSTLVAEKNSLFS-QLQDVNENLKKLSDENNFLVNSLFDANA 772 (1849)
Q Consensus 696 kns~LE~SLSd~n~ELegLR~K~k~LEesc~~--L~~EKs~L~sEk~~LvS-QLq~~~~~l~~L~Ekns~LE~slsd~~~ 772 (1849)
.- +.+|.+....++.|-+++.++-..-.+ .++|+--=-.+++.+.. +|... -.+...|.-+-.
T Consensus 350 ~T---~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e~~l~a~-----------e~~a~k~~~a~~ 415 (772)
T KOG0999|consen 350 HT---EGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYEVDLNAL-----------EILACKYAVAVD 415 (772)
T ss_pred cc---hhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHHhhhhhH-----------HHHHHHHHHHHH
Confidence 53 677777777777777777655322211 22222221122222211 11111 134566666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 000217 773 EVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLE 820 (1849)
Q Consensus 773 ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~le 820 (1849)
++-.++..++.|-.. .++..++....+.+-.+..++..++
T Consensus 416 e~i~lk~ql~~l~~~--------~n~tde~~~~e~evq~l~~kl~lle 455 (772)
T KOG0999|consen 416 EMIQLKDQLKALYHQ--------LNYTDEKVQYEKEVQELVEKLRLLE 455 (772)
T ss_pred HHHHHHHHHHHHHHh--------hcccchhhhHHHHHHHHHHHHHHHH
Confidence 777777777666443 2333444444444444444444443
No 78
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.11 E-value=0.23 Score=63.32 Aligned_cols=328 Identities=19% Similarity=0.231 Sum_probs=185.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000217 552 QILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNL-QDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEE 630 (1849)
Q Consensus 552 ~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~L-QdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee 630 (1849)
.....||..+..|+.+|..+..--.+ . ...|+.. -.|+...+-+... --.++.-++.+|..++++
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~------~-ts~ik~~ye~El~~ar~~l~e-------~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGR------E-TSGIKAKYEAELATARKLLDE-------TARERAKLEIEITKLREE 121 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC------C-CcchhHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHhHHH
Confidence 34566677777777776665322111 0 0133333 3455555444333 123466777788888888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000217 631 LNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE 710 (1849)
Q Consensus 631 ~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~E 710 (1849)
+..+-.++......+.. .+..+.+...-...|..+.+....-...+-+.+. .|.-+|.-|...|-.+...
T Consensus 122 ~~elr~~~~~~~k~~~~-------~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~---~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRG-------AREKLDDYLSRLSELEAEINTLKRRIKALEDELK---RLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHHHhh-------hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 88888777666554432 2333333333333333333333332222222111 2234455555555555555
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHH---HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 000217 711 LEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN---LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787 (1849)
Q Consensus 711 LegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~---l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes 787 (1849)
||.=+---.+++..|+.|..+...+...-..-|-++.....+ -++=..=...|-.++-|+.++-+.....-+.=-+.
T Consensus 192 ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~ 271 (546)
T KOG0977|consen 192 LDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES 271 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555677777777777666654444444444333221 11111122345555555566555554444332222
Q ss_pred HHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHH
Q 000217 788 CLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSET 867 (1849)
Q Consensus 788 ~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~ 867 (1849)
..-.+-....-.+++.+. ..+...+++..+......|.-++.+++.--..+..+++.|+.+|.-+ .++.+.
T Consensus 272 ~Y~~kI~~i~~~~~~~~~--~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~-------~r~~e~ 342 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANV--EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDED-------QRSFEQ 342 (546)
T ss_pred HHHHHHHHHHhhhccccc--hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhh-------hhhhhh
Confidence 222222222222222222 23344566666666666667777777766677777888888888777 677888
Q ss_pred HHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q 000217 868 RLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQ 912 (1849)
Q Consensus 868 ~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~ 912 (1849)
-+++.+.+|-.+.+++..+..+|+.=+|--+.=+.||-+-.+.+.
T Consensus 343 ~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 343 ALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence 999999999999999999999999988888888888888777764
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.08 E-value=2 Score=56.36 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=46.0
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000217 701 ENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1849)
Q Consensus 701 E~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K 780 (1849)
+..|-++-.|.-.|++.+-.||-.|--|.++-.+.- |-=+|.-.-- .-+-.++-.=|.-++.+-.+.+.++.|
T Consensus 420 q~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~-eyi~ly~~qr------~~~k~r~~e~~~~i~~l~~~~e~mk~k 492 (617)
T PF15070_consen 420 QSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIG-EYITLYQSQR------AVLKQRHQEKEEYISRLAQDREEMKVK 492 (617)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchh-hhhccccccc------cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666777777777777776666543321 1000000000 011122222334455566777888888
Q ss_pred HHHHHHHHHHhhhh
Q 000217 781 SKSLEDSCLLLDNE 794 (1849)
Q Consensus 781 ~k~lEes~~~l~~e 794 (1849)
+..|-+.+-.|-.+
T Consensus 493 l~elq~lv~~l~~~ 506 (617)
T PF15070_consen 493 LLELQELVLRLVGD 506 (617)
T ss_pred HHHHHHHHHHHHhh
Confidence 88887777666433
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.01 E-value=0.21 Score=63.61 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHH
Q 000217 231 RMGKAEMEILTLKNALAKLEAEK 253 (1849)
Q Consensus 231 R~~kAe~EI~~Lkk~i~~LqtEK 253 (1849)
+..+++.+|+.|+..+..++.+-
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666665554
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.92 E-value=3.3 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000217 443 ARAEEEAQRLHSELDNGFAKLKGAEE 468 (1849)
Q Consensus 443 S~sQeEv~RL~~Eie~~~~kLk~lE~ 468 (1849)
.-.=+++.-|..+|...+..|.+++.
T Consensus 1507 p~tpeqi~~L~~~I~e~v~sL~nVd~ 1532 (1758)
T KOG0994|consen 1507 PLTPEQIQQLTGEIQERVASLPNVDA 1532 (1758)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 33456778888888888888888875
No 82
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.90 E-value=2.4 Score=54.84 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 561 ~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
+..|+.++..+.--|-++.+..--...++..|-......|+.+.++|....
T Consensus 385 nr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~ 435 (629)
T KOG0963|consen 385 NRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLL 435 (629)
T ss_pred HhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence 445555555555445455443333344666677777777887777766443
No 83
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.81 E-value=2.7 Score=53.99 Aligned_cols=122 Identities=24% Similarity=0.247 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHH
Q 000217 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSEL 484 (1849)
Q Consensus 405 ~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~ 484 (1849)
.++..|+.+...+++++..+..++.++..-+..++..+....+-.+....++......+.+.|..+-.+..+...+..++
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~ 353 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREEL 353 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 44667777777888888888888888877777777776665555544444444444433333555545544444444443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000217 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEER--LRFVEAETAFQTL 529 (1849)
Q Consensus 485 e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~--~k~~EaE~aL~~L 529 (1849)
.. ......-.+..+-.|++.|+..+..-. ....+.|..|..+
T Consensus 354 ~~---~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 354 SR---QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HH---hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 33 334445556777888888887766632 2344445444444
No 84
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.80 E-value=3.8 Score=55.06 Aligned_cols=117 Identities=25% Similarity=0.251 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhh
Q 000217 690 MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1849)
Q Consensus 690 mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd 769 (1849)
++++-....-|+-.|..++..++.++.+++.+|.....|+.+...+..=+..+-.||+.+... +..|+..+.+
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~-------~e~le~~~~~ 670 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES-------YESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhH
Confidence 334444446677888888889999999999999988888888887777788888888887544 4457788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHH
Q 000217 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIAR 813 (1849)
Q Consensus 770 ~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~ 813 (1849)
+++|+..+..|+..||+-+...+..+..+.+.-..|.-|+....
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 88889889999999988888887777777766666666666554
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1.6 Score=57.57 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000217 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561 (1849)
Q Consensus 482 ~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~ 561 (1849)
.+.-++.+++...+..+.+.+.++.+++..++.-..+...+-..+-.+..- -..++-+.+.-.+++.++..+.
T Consensus 792 eqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~-------~~~la~e~~~ieq~ls~l~~~~ 864 (970)
T KOG0946|consen 792 EQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGST-------EKNLANELKLIEQKLSNLQEKI 864 (970)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcc-------ccchhhHHHHHHHHHHHHHHHh
Confidence 333344444455555555556666666655555443333333333333211 1234445555556666666666
Q ss_pred HHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNEL 634 (1849)
Q Consensus 562 ~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~L 634 (1849)
.-..+.|..+.|.+.+|-.+--++..++--.+-+.+ +++-+.....+|++.++-.+.++++.|+.|
T Consensus 865 k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~-------nl~lki~s~kqeqee~~v~~~~~~~~i~al 930 (970)
T KOG0946|consen 865 KFGNNLIKELTEKISSLEAQADSETLSKALKTVKSE-------NLSLKIVSNKQEQEELLVLLADQKEKIQAL 930 (970)
T ss_pred hhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcc-------cchhcccchhhhHHHHHHHHhhHHHHHHHH
Confidence 666677777777777776665454444333333332 222233333345666666665555544433
No 86
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.77 E-value=4.9 Score=55.98 Aligned_cols=248 Identities=17% Similarity=0.125 Sum_probs=106.4
Q ss_pred hHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhhHH
Q 000217 872 MESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQE 951 (1849)
Q Consensus 872 LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe~E~~~~q~ 951 (1849)
+-.+.+-++++-....++++.-......+..+|.-+++..-.+...-.....-.++... .+.=|..|..+....--
T Consensus 824 ~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~q----le~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 824 LRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQ----LEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHH
Confidence 33444556666667777777777666666666666665554433322221111111110 12224444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhhHHHHHhhHHHHH
Q 000217 952 EMRSLVDQIKVLRVQLYQLLEILE-IDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVAL 1030 (1849)
Q Consensus 952 e~~~Ll~~i~~Lr~gi~qvl~~L~-i~~~~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q~en~~~~~E~svL~t~ 1030 (1849)
++.-++..+..++......+.+.. ...... + ...+.|..++.|......+...+..-..--+.+-.++.
T Consensus 900 ~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~----~-~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~----- 969 (1294)
T KOG0962|consen 900 KVKELLERIQPLKVELEEAQSEKEELKNERN----T-SEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLR----- 969 (1294)
T ss_pred HHHhhHhhhcchhhhHHHHHHHHHHHHHHhh----H-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhc-----
Confidence 555555555555555554433311 000000 0 12222223333333333222222222211111111111
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhH-----
Q 000217 1031 LGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQ----- 1105 (1849)
Q Consensus 1031 l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~----- 1105 (1849)
...+..+......+..++. ...+.+..+.....+++-|-+++.-. .+...+..|+..+-.|.....
T Consensus 970 ----~~~l~~~~e~l~~~~~~~~-~~~~~l~~~~~~er~l~dnl~~~~l~----~q~~e~~re~~~ld~Qi~~~~~~~~~ 1040 (1294)
T KOG0962|consen 970 ----IAQLSESEEHLEERDNEVN-EIKQKIRNQYQRERNLKDNLTLRNLE----RKLKELERELSELDKQILEADIKSVK 1040 (1294)
T ss_pred ----hHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1122222222333333321 22233344444455555555554433 355567777777777777666
Q ss_pred HHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhh
Q 000217 1106 GAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEE 1142 (1849)
Q Consensus 1106 ~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~e 1142 (1849)
+.++.|+++..++.-++.-+......+......+..+
T Consensus 1041 ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~e 1077 (1294)
T KOG0962|consen 1041 EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQE 1077 (1294)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444444444444444333333
No 87
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.69 E-value=3.6 Score=53.42 Aligned_cols=117 Identities=22% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHH-Hhhh---ccCHHHHHHHHHHHH-----------HHHHHHHHHhhhhHHHHHHHHHHHHHhhcccc
Q 000217 516 RLRFVEAETAFQTL-QHLH---SQSQDELRSLAAELQ-----------NRAQILKDMGTRNQSLQEEVEKVKEENKGLNE 580 (1849)
Q Consensus 516 ~~k~~EaE~aL~~L-e~Lh---SqSQeE~~~L~~Ei~-----------~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne 580 (1849)
..|+..||.....+ +.+- .+.=..+.+|+.-+. +..+.|.+.......+...-.--++|.=.+|=
T Consensus 618 qrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~ 697 (961)
T KOG4673|consen 618 QRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNF 697 (961)
T ss_pred HHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 45556667666666 2221 122345555554443 23344554433333333333444455444443
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000217 581 LNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELN 632 (1849)
Q Consensus 581 ~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~ 632 (1849)
.-.++....-=|..|...|..-..+-..-..-+.++.+++|.++..+++.+.
T Consensus 698 ~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 698 SLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN 749 (961)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566777766654444333333345556666665544444333
No 88
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.95 Score=59.44 Aligned_cols=258 Identities=21% Similarity=0.227 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q 000217 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE---KCLLLERSNQTLHSELESMVQKMGSQSQ 496 (1849)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~---~~~~LE~~~q~L~~E~e~L~qk~~~~~q 496 (1849)
...+|..+..++.+++...-..|++...++.-|+..+..-..+..++-+ ..-....++.++..+...+.+...-+..
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~ 758 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTK 758 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443322222222111 1112345677888888888878778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 000217 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK 576 (1849)
Q Consensus 497 EL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~ 576 (1849)
+|+.+..-++.++...++....---.-..+. -|+.+..| +..+...-.+.+.++.++...++++.
T Consensus 759 ~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~--------~qeqv~El-------~~~l~e~~~~l~~~q~e~~~~keq~~ 823 (970)
T KOG0946|consen 759 ELNKKNADIESFKATQRSAELSQGSLNDNLG--------DQEQVIEL-------LKNLSEESTRLQELQSELTQLKEQIQ 823 (970)
T ss_pred HHHhhhHHHHHHHHHHhhhhcccchhhhhhh--------hHHHHHHH-------HHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888776652111111111111 12222222 22366666777888888888888887
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchh
Q 000217 577 GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656 (1849)
Q Consensus 577 ~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~ 656 (1849)
.+...- ..-.+.+..++.+|..+-.|...--..=.+|++++.-....+..+-.+..++..+.. .+++-
T Consensus 824 t~~~~t-------sa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qad-----se~l~ 891 (970)
T KOG0946|consen 824 TLLERT-------SAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQAD-----SETLS 891 (970)
T ss_pred HHHHHH-------HhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhc-----chHHH
Confidence 776552 233455556666665554444422222345666665555555555555555554433 22333
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000217 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNV 709 (1849)
Q Consensus 657 ~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ 709 (1849)
.-|+....+|..|+= .....|+..++--+-+-+ ++...|.+-++|+++
T Consensus 892 ka~~~~k~~nl~lki--~s~kqeqee~~v~~~~~~---~~i~alk~~l~dL~q 939 (970)
T KOG0946|consen 892 KALKTVKSENLSLKI--VSNKQEQEELLVLLADQK---EKIQALKEALEDLNQ 939 (970)
T ss_pred HHHHHhhcccchhcc--cchhhhHHHHHHHHhhHH---HHHHHHHHHHHHhCC
Confidence 334444444444433 333344444443333222 222344444555554
No 89
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.56 E-value=4.4 Score=52.77 Aligned_cols=165 Identities=19% Similarity=0.250 Sum_probs=82.5
Q ss_pred HhHHHHHhhhhhHHhHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 378 MISALEDKLLHSEEDSKRINKVADK-----AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~~~~ln~~~e~-----~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
.+..||..+..++............ |..-+..++..+..|+.-.+.+=.-|..|...+ -.+=+++..-
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~-------P~ql~eL~~g 234 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF-------PDQLEELKEG 234 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-------HHHHHHHHHH
Confidence 4455666777777666666554332 455555555555555555555444444333222 2122222221
Q ss_pred HHHHHhhhhhhhh--HHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 453 HSELDNGFAKLKG--AEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQ 530 (1849)
Q Consensus 453 ~~Eie~~~~kLk~--lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le 530 (1849)
-.++....-.|.. ++.....++..+......+.++ .+..-...+.....+|+.|-..++.|..-+-..+..+..+.
T Consensus 235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~ 312 (560)
T PF06160_consen 235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELY 312 (560)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1222221122221 2223222332233322222222 22333445566677788888888888777777777777766
Q ss_pred hhhccCHHHHHHHHHHHHHHH
Q 000217 531 HLHSQSQDELRSLAAELQNRA 551 (1849)
Q Consensus 531 ~LhSqSQeE~~~L~~Ei~~~~ 551 (1849)
.......+..+.|..|+....
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 665566666666666665433
No 90
>PRK11637 AmiB activator; Provisional
Probab=96.43 E-value=2.2 Score=53.49 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=29.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000217 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1849)
Q Consensus 408 ~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE 467 (1849)
..|......+......+.....+.......|+....+.+..+.+|..++......+..++
T Consensus 180 ~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 180 EELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444445555555555555555555555555555555444444433
No 91
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=6.6 Score=53.07 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000217 236 EMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ 315 (1849)
Q Consensus 236 e~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQ 315 (1849)
..+|..|...+.-|..||+.....|...+.+--.||-+|...|.++-+-.+.-+-+....+.++..+..-+.|...-.=.
T Consensus 271 ~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pk 350 (1200)
T KOG0964|consen 271 KCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPK 350 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33444455555666778999999999999999999999988888876665544556666666777666555555555545
Q ss_pred HHHHHHHHHhHHHHHhhhHHhHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 000217 316 YQQCLDKLSNMEKNISRAEADAVELS-------------DRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISAL 382 (1849)
Q Consensus 316 ykqClEkis~LE~~~s~aqeeak~ln-------------era~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~L 382 (1849)
|+.-+++=..+-..+..++...+.+. +|=+-...++..|+.-+.... +..+.|
T Consensus 351 y~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~k--------------e~e~~l 416 (1200)
T KOG0964|consen 351 YNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTK--------------EQENIL 416 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhh--------------hHHHHH
Confidence 55555544444444444444333332 222223333333333333221 222333
Q ss_pred HHhhhhhHHhHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000217 383 EDKLLHSEEDSKRINKVADKAES-------EVERLKQALGKLTEEKEALALQY-------QQCLEAISILEHKLARAEEE 448 (1849)
Q Consensus 383 E~kI~~aee~~~~ln~~~e~~e~-------ev~~Lk~~i~kL~Eekeal~l~~-------qq~~~kI~~LE~elS~sQeE 448 (1849)
..++-.++.+.....+++..++. .+..+......++.+.+.+...- ..+...|.+++..++.++..
T Consensus 417 q~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 417 QKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333222 22233333333444444433332 34566788888999998888
Q ss_pred HHHH
Q 000217 449 AQRL 452 (1849)
Q Consensus 449 v~RL 452 (1849)
+++.
T Consensus 497 L~~~ 500 (1200)
T KOG0964|consen 497 LRAT 500 (1200)
T ss_pred HHHh
Confidence 8776
No 92
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.36 E-value=4.6 Score=50.73 Aligned_cols=289 Identities=21% Similarity=0.201 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000217 395 RINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1849)
Q Consensus 395 ~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE 474 (1849)
.+.+-++.++..-.+|+....++..-.-+|....+.-..+|..|..++-...++++.|..-++.+...+..--..
T Consensus 292 k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is----- 366 (622)
T COG5185 292 KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS----- 366 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC-----
Confidence 334445555666666666666666666667777777777777777777777778887777777766655431000
Q ss_pred HhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHH-HHH
Q 000217 475 RSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNR-AQI 553 (1849)
Q Consensus 475 ~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~-~~~ 553 (1849)
-++.+.+++.--.+.++|.-..-+++.|..++-+ +-.+|+..+..|++.- ...++|+.+|.-. .+.
T Consensus 367 ------~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~---~~leaq~~~~slek~~----~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 367 ------TEQFELMNQEREKLTRELDKINIQSDKLTKSVKS---RKLEAQGIFKSLEKTL----RQYDSLIQNITRSRSQI 433 (622)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh---HHHHHHHHHHHHHHHH----HHHHHHHHHhcccHHHH
Confidence 1122222222223345555555556666655544 3456666666665544 3566676666532 122
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHH
Q 000217 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNA-LQQEIYCLKEELN 632 (1849)
Q Consensus 554 L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~a-Lqqel~~lkee~~ 632 (1849)
-.+.... .++-.+.++++.+.....+|+.+-.|+..--....+ .|+ + |.- |+..+--++..+.
T Consensus 434 ~~~~nd~---------~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~--~e~----n-ksi~Lee~i~~~~~~i~ 497 (622)
T COG5185 434 GHNVNDS---------SLKINIEQLFPKGSGINESIKKSILELNDEIQERIK--TEE----N-KSITLEEDIKNLKHDIN 497 (622)
T ss_pred hhcCCCC---------ceeeccccCCccccCchHhHHHHHHHHhHHHHHHHH--HHh----c-cceeHHHHhhhHHhHHH
Confidence 1111110 011123678888877766666654444321111111 110 0 222 5555555555555
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhh
Q 000217 633 ELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK-LLEKNAVLENSLSDLNVEL 711 (1849)
Q Consensus 633 ~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mek-LlEkns~LE~SLSd~n~EL 711 (1849)
.|+.++-.+...|..+|. .|..++++-+ .|+.|---...-||+ |..=|...-+|++++..-+
T Consensus 498 El~~~l~~~e~~L~~a~s--------------~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~v 560 (622)
T COG5185 498 ELTQILEKLELELSEANS--------------KFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLV 560 (622)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHH
Confidence 555555555555543321 2333333322 233333222223442 3334666678888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhH
Q 000217 712 EGVRDKVKALEEVCQNLLAEKST 734 (1849)
Q Consensus 712 egLR~K~k~LEesc~~L~~EKs~ 734 (1849)
...+.+.-.+--+|.-.+++..-
T Consensus 561 qs~~i~ld~~~~~~n~~r~~i~k 583 (622)
T COG5185 561 QSTEIKLDELKVDLNRKRYKIHK 583 (622)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 88887776666666666555543
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.33 E-value=0.86 Score=60.38 Aligned_cols=230 Identities=21% Similarity=0.240 Sum_probs=108.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Q 000217 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1849)
Q Consensus 410 Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~q 489 (1849)
|..+|.+|+.+..++...=+++...|..+.+--.....++..|..+.+.+..|+..+... -+.+.+.+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a----------Rq~DKq~l-- 490 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA----------RQQDKQSL-- 490 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--
Confidence 334444455555555555556666666666655556666666666666666655554432 23333333
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccC-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 000217 490 KMGSQSQELTEKQKELGRLWTCIQEERLRFVEAE-TAFQTLQHLHSQS-------QDELRSLAAELQNRAQILKDMGTRN 561 (1849)
Q Consensus 490 k~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE-~aL~~Le~LhSqS-------QeE~~~L~~Ei~~~~~~L~~lE~~~ 561 (1849)
+.+.+.|.+.+.--..+...+.+|.....++| ++-..+..-.+.- ..-.+.|-.|++.+-.+|+.-+.++
T Consensus 491 --~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 491 --QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666777754444433 3322211000000 1111222233333333444444444
Q ss_pred HHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhhhHHHHHHHHHH
Q 000217 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEA--------------EVELRVDQRNALQQEIYCL 627 (1849)
Q Consensus 562 ~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~--------------Ev~~~v~ek~aLqqel~~l 627 (1849)
..|+.++..+..-. .+ +...+..|...+..+.+-...||. -+|--..+-+.++..+...
T Consensus 569 ~~~e~~~~~lr~~~---~e----~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~ 641 (697)
T PF09726_consen 569 RELESELQELRKYE---KE----SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKK 641 (697)
T ss_pred HHHHHHHHHHHHHH---hh----hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443221110 00 111233333333344433333333 3333344566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCCCCcchhhhHH
Q 000217 628 KEELNELNKKHQAMVEQVES----VSLNPENFGLSVK 660 (1849)
Q Consensus 628 kee~~~Ln~k~~~l~eql~~----l~~~~e~~~~~vk 660 (1849)
-.||..|..+...++-=|-. .++.|-+-+.+++
T Consensus 642 d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~~~~~~ 678 (697)
T PF09726_consen 642 DKEIEELKAKIAQLLAVMPSDSYCSAITPPTPHYSSK 678 (697)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccCCCCCCccchhh
Confidence 77777888777666654443 2344444444444
No 94
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.20 E-value=0.87 Score=51.56 Aligned_cols=147 Identities=23% Similarity=0.369 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCcchhhhHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK---KHQAMVEQVESVSLNPENFGLSVKELQD 664 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~---k~~~l~eql~~l~~~~e~~~~~vkeLQ~ 664 (1849)
+|.+|+.-+.+|.+-..+|...|..--+....|..++..++..+..+.. .+-++.+.+ +.++..++.|++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEl-------edLk~~~~~lEE 81 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEEL-------EDLKTLAKSLEE 81 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 6777777777777777777777764455677787778777777765542 333334433 345667777777
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHH----------HHHHHHHhhhH
Q 000217 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEE----------VCQNLLAEKST 734 (1849)
Q Consensus 665 ~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEe----------sc~~L~~EKs~ 734 (1849)
.+.+|...+.....|.-.|+.+++.++ ....-+..+.+|+..+++.|-. .|.+|...+..
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lq----------een~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQ----------EENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776655543 3333445566666666666532 34455556666
Q ss_pred hHhhHHHHHhhhHHHHH
Q 000217 735 LVAEKNSLFSQLQDVNE 751 (1849)
Q Consensus 735 L~sEk~~LvSQLq~~~~ 751 (1849)
+++||..-+..|..+-+
T Consensus 152 ~l~e~t~~i~eL~~~ie 168 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIE 168 (193)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 66676666666654433
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=6.5 Score=50.73 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhHHHHHH
Q 000217 692 KLLEKNAVLENSLSDLNVELEGVRDKVK 719 (1849)
Q Consensus 692 kLlEkns~LE~SLSd~n~ELegLR~K~k 719 (1849)
.|+-.+..+.++++++-..+...+....
T Consensus 500 ~l~~l~l~~~~~m~~a~~~v~s~e~el~ 527 (581)
T KOG0995|consen 500 ELLNLKLVLNTSMKEAEELVKSIELELD 527 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677788888887776666555433
No 96
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.94 E-value=6.2 Score=48.71 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 335 ADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQAL 414 (1849)
Q Consensus 335 eeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i 414 (1849)
.+++.-......++.|-+.-.+|+.....|++.+. +....+-.....|+.+..++..+..++...+..|-.+.
T Consensus 88 tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~-------~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr 160 (499)
T COG4372 88 TELGTAQGEKRAAETEREAARSELQKARQEREAVR-------QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444556777777777777777777764 23344445556778888888888888888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 000217 415 GKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQ 494 (1849)
Q Consensus 415 ~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~ 494 (1849)
.+++..++++..+..++-.....|.......-....+ |+.....|-+--+..+.++++......-.+...++++..
T Consensus 161 ~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~----ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qr 236 (499)
T COG4372 161 RQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQ----IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQR 236 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887666655554444333333333333333 222223333333344556777888888888899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 495 SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQ 530 (1849)
Q Consensus 495 ~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le 530 (1849)
+..+.++-.+|..--..|++--.+..+.|++...++
T Consensus 237 d~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le 272 (499)
T COG4372 237 DAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272 (499)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888876666777777766653
No 97
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.92 E-value=1.9 Score=50.53 Aligned_cols=126 Identities=27% Similarity=0.337 Sum_probs=76.1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Q 000217 329 NISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVE 408 (1849)
Q Consensus 329 ~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~ 408 (1849)
+........+....-..++..+...++..+..++.+.++ ++..|+..+.+...+++++++++..+.
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~--------------le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELED--------------LENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444555555555555555444443 344555555555555566555555543
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1849)
Q Consensus 409 ~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~L 473 (1849)
..+. ..+..++.-..+....++.+|+.++....+++..|..+|......+...|..+...
T Consensus 84 ~v~~-----~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 84 AVKD-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 34556677777777888888888888888888888888888888888777665444
No 98
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.85 E-value=4.6 Score=46.09 Aligned_cols=198 Identities=25% Similarity=0.303 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000217 291 AEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVV 370 (1849)
Q Consensus 291 ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~l 370 (1849)
|++++.+|...+..|+.+.+.+--.|....+++...+.---.+.--.+.+..|+.+.+.++..+...+....-=-+.+-
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~ad- 80 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKAD- 80 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5677777777777777777777666666666666665555554445566666777767666665554433211001110
Q ss_pred HHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 371 KYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQ 450 (1849)
Q Consensus 371 qyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~ 450 (1849)
.+-.+-..++.-.+.++.+...+++-+++.+..|...+.-+.....++...-+...++.-
T Consensus 81 ------rK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d-------------- 140 (205)
T KOG1003|consen 81 ------RKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEE-------------- 140 (205)
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHH--------------
Confidence 112222233333455555556666666776666666555554444433333322222222
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000217 451 RLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLW 509 (1849)
Q Consensus 451 RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~ 509 (1849)
....+|.....||+.+|.+.--.+++++.|..+.+.|..++.....+....+.+++..-
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 22334555556899999988889999999999999998888777666666666666543
No 99
>PRK11637 AmiB activator; Provisional
Probab=95.82 E-value=8 Score=48.63 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=19.7
Q ss_pred HHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 317 QQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLA 359 (1849)
Q Consensus 317 kqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~ 359 (1849)
......|..++..+...+.+...+..++..++.++..++..+.
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.76 E-value=11 Score=49.71 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=38.9
Q ss_pred cCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 000217 224 RVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARED 280 (1849)
Q Consensus 224 ~~~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~ 280 (1849)
...+...+..+.+.|++.|++.|..|.++-+...-.+...-..+..++.++..++..
T Consensus 315 ~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~ 371 (594)
T PF05667_consen 315 EKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAE 371 (594)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556688888999998888888877777776666666666666666554443
No 101
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.73 E-value=2.5 Score=48.05 Aligned_cols=183 Identities=21% Similarity=0.277 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhHhhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHH
Q 000217 1003 LKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQF---VVLQREFPKLTEINEELRVE 1079 (1849)
Q Consensus 1003 ~~~l~~s~~~~q~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~---l~Lq~e~~eLle~n~qL~~~ 1079 (1849)
..+|..++.+++.-|+.+..||+-|-..+..+-..-+.|-.+...|.....+.-+-+ -++..+..+ |+..
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~ 75 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTL 75 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 356677777888888888888877766555555444444444444444433321100 011122222 2222
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhhhhhHHHHhhhcccchhh
Q 000217 1080 VAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHI 1159 (1849)
Q Consensus 1080 ~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~en~~~l~E~i~~snLs~~ 1159 (1849)
+..-++.-..|-+....+-++=--|-....+||++|-+++.+-+-+.+...+|-.+.-.|--..|. ..+|-..
T Consensus 76 ~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~-------~e~l~~~ 148 (193)
T PF14662_consen 76 AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE-------FESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH-------HHHHHHH
Confidence 221111111222222222222222233344555555565555555555555554444343333211 1223334
Q ss_pred hhhhhHHHHHHHHHHHHhHhhhhccchhHHHHHHHhhhhh
Q 000217 1160 FKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKL 1199 (1849)
Q Consensus 1160 ~~~~~~Ek~~~l~~L~e~l~~L~~~n~~L~~~v~~~~~kl 1199 (1849)
-..+.+++...+..|..-+.....+..+|..++.-+...+
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677888888888888888888888888877655443
No 102
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=14 Score=50.13 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000217 236 EMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAR 278 (1849)
Q Consensus 236 e~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ 278 (1849)
++=+..+++|. ..++|=..++.| -=+|+..||.+=.++-
T Consensus 173 eeSlkim~ET~--qK~ekI~ell~y--ieerLreLEeEKeeL~ 211 (1200)
T KOG0964|consen 173 EESLKIMEETK--QKREKINELLKY--IEERLRELEEEKEELE 211 (1200)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHH--HHHHHHHHHHhHHHHH
Confidence 34456666664 356777788888 7788888887765544
No 103
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.58 E-value=1.1 Score=48.77 Aligned_cols=127 Identities=24% Similarity=0.309 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000217 364 EKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALA---LQYQQCLEAISILEH 440 (1849)
Q Consensus 364 EKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~---l~~qq~~~kI~~LE~ 440 (1849)
|++.+.-++.++=..+-.|+......+..+..|+..+..++.+++.+...+.....-.+... .....+..+|..||.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEe 87 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEE 87 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHH
Confidence 33333333333333333333333333333334444444444444444443333332222221 112234444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q 000217 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQE 497 (1849)
Q Consensus 441 elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qE 497 (1849)
.+-.+.. -+.....+|..+......+++....|..+...+..++......
T Consensus 88 ele~ae~-------~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 88 ELEEAEK-------KLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444333 3444555566666666666666666666677776665544443
No 104
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=13 Score=49.18 Aligned_cols=87 Identities=17% Similarity=0.047 Sum_probs=51.6
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Q 000217 758 DENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1849)
Q Consensus 758 Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1849)
+-++.+|.|..++..++- ..+.....+..+...|.+|+..-...+..-.+.-+-+..++.+..++.
T Consensus 447 k~~~e~e~s~~~~~~~i~--------------~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~ 512 (716)
T KOG4593|consen 447 KHSLEMEASMEELYREIT--------------GQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKEL 512 (716)
T ss_pred HhhHhhhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 344555555555544443 333333444566777777877777777776666666677777777776
Q ss_pred HHHHHHHHHHHHhHHHHHHHh
Q 000217 838 ESTLQKVEELQFSLDAEKQQH 858 (1849)
Q Consensus 838 e~~~~~veel~~sL~~e~qeh 858 (1849)
...-.+=..+..++...|-.+
T Consensus 513 ~~Le~En~rLr~~~e~~~l~g 533 (716)
T KOG4593|consen 513 ELLEEENDRLRAQLERRLLQG 533 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 665555444455555554443
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.34 E-value=9.9 Score=46.52 Aligned_cols=113 Identities=26% Similarity=0.276 Sum_probs=93.9
Q ss_pred hhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHH
Q 000217 737 AEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGL 816 (1849)
Q Consensus 737 sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l 816 (1849)
++..+|..-|.-+.+.-..|......|=..|.+++.+...||.++......+.....-+ ...+++.|+.|++.++.+.
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~--~~~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH--FPHEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc--cchHHHHHHHHHHHHHHHH
Confidence 36667777777777777788888888888888999999999999988877775554333 3399999999999999999
Q ss_pred HHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhH
Q 000217 817 KDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1849)
Q Consensus 817 ~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL 851 (1849)
..|+..|--..|.--.+-.|++..-+.+..||..|
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887766
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.27 E-value=1.9 Score=50.59 Aligned_cols=151 Identities=26% Similarity=0.337 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHh
Q 000217 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1849)
Q Consensus 479 ~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE 558 (1849)
.++++.+.++..+.....+++...+++..++..|++-..|.--++..+.. .-.+.+.++|..|++........++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~-----v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA-----VKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555666666666655555555555522 2346899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHH
Q 000217 559 TRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELN-ELNKK 637 (1849)
Q Consensus 559 ~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~-~Ln~k 637 (1849)
.....|++.+..+..++..+.+.... +...+. +....++.+|.---.+...+.++...+++++. .+...
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~-------~e~~~~---e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~ 179 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLER-------LEKNLA---EAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSE 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999888777777665433 222222 22223344444222334555555656666553 55555
Q ss_pred HHHHHHH
Q 000217 638 HQAMVEQ 644 (1849)
Q Consensus 638 ~~~l~eq 644 (1849)
|..+..-
T Consensus 180 yeri~~~ 186 (239)
T COG1579 180 YERIRKN 186 (239)
T ss_pred HHHHHhc
Confidence 5555543
No 107
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.01 E-value=2.5 Score=48.26 Aligned_cols=60 Identities=27% Similarity=0.425 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVE-LRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~-~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~ 647 (1849)
.|++...++.++++.+..|..=+. .+..+++.|+.++..+...++.-+++...|..++..
T Consensus 90 klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 90 KLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433222 267889999999999999999999999998888864
No 108
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.98 E-value=4.8 Score=53.72 Aligned_cols=102 Identities=28% Similarity=0.336 Sum_probs=62.1
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHh-------hHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Q 000217 702 NSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVA-------EKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEV 774 (1849)
Q Consensus 702 ~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~s-------Ek~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~El 774 (1849)
....++..|+.-||.-++.-|+.|..|..+...|.. |-++|++-|..+ .+|+.-||++||.=+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am-------qdk~~~LE~sLsaEt--- 614 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM-------QDKNQHLENSLSAET--- 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHhhhHHH---
Confidence 344556667777777777777777777777755432 456666666655 889999999998532
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 000217 775 EGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYL 831 (1849)
Q Consensus 775 E~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~ 831 (1849)
|.|+. .+ +-+..-..|++..+..+...+++..+|.-|..
T Consensus 615 ---riKld----Lf-----------saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 615 ---RIKLD----LF-----------SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred ---HHHHH----HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 12 22333344555555555555555555555443
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.78 E-value=3.4 Score=45.07 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000217 305 LETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1849)
Q Consensus 305 L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l 361 (1849)
|..+.+.+.-.+..+..++..|+........++..|+.+...++.++..+...+...
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555555555555555555555555555555555555555555444444
No 110
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.66 E-value=11 Score=43.34 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHH
Q 000217 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTL 298 (1849)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sL 298 (1849)
.|+++|.+|...|..|+-|-|-+.-.|.-.+.++.+.+..-.+.---.+.+..|+.+.+..+..+
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~ 65 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQ 65 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 37888999999998888888888877877777777776655433333334444444444433333
No 111
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.56 E-value=29 Score=47.99 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHH
Q 000217 264 LERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDR 343 (1849)
Q Consensus 264 lek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lner 343 (1849)
-.++|++|..|.+.+.-+. +. +.+...+..|-.++..|..+.-++...+-+-..+|++.-+.+..+..++..|...
T Consensus 1200 ~s~f~~me~kl~~ir~il~---~~-svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1200 ASRFLDMEEKLEEIRAILS---AP-SVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HhHHHHHHHHHHHHHHHhc---CC-CccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 4567777777776665432 21 1122233334444444444444555556777788888888888888888888877
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 000217 344 ASKAEIEAQTLKLDLARIE 362 (1849)
Q Consensus 344 a~~AE~Ev~~LKqel~~l~ 362 (1849)
+.....-++.|+..+..+.
T Consensus 1276 ~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777663
No 112
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.51 E-value=25 Score=50.55 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 583 LSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 583 ~SS~~sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
.+....+..|..++...+.....-++|+-
T Consensus 1082 ~~~~~l~~~l~~~i~~~~~ll~e~er~l~ 1110 (1353)
T TIGR02680 1082 VTPAGLLARLEQEIAQRRELLTARERELL 1110 (1353)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34444677777777777776665555443
No 113
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.40 E-value=0.16 Score=57.08 Aligned_cols=117 Identities=27% Similarity=0.330 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000217 716 DKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1849)
Q Consensus 716 ~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~ 795 (1849)
..+.+++..+-.+..|...+.-.++.+..+|-.++..++.+..+.......+..+..++..++.+++++++.+......+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhc
Q 000217 796 SCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1849)
Q Consensus 796 s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1849)
..+..|...|--|+..++.++..++.+..+|-+|...
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888754
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.37 E-value=18 Score=44.88 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=112.8
Q ss_pred HHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHH
Q 000217 321 DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVA 400 (1849)
Q Consensus 321 Ekis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~ 400 (1849)
+.+..+...+..|+.+...+.+++.+...++.+|--.-..+++++++..-+-++--.-.+.| ...+.+|..+.
T Consensus 123 ~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql-------k~~~~~L~~r~ 195 (499)
T COG4372 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL-------KSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 44555667778888888899999999999999999999999999988633322222222333 33344444554
Q ss_pred HHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 000217 401 DKAESEVERLK---QALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1849)
Q Consensus 401 e~~e~ev~~Lk---~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~ 477 (1849)
..++.+.+.|- ..+....++........++.-++|+...-.+++..-++--=...|.....+|+.+|.....||.+.
T Consensus 196 ~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 196 AQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444 335667788888888899999999999999998777777767778888888988888877777666
Q ss_pred HHHHHHHHH
Q 000217 478 QTLHSELES 486 (1849)
Q Consensus 478 q~L~~E~e~ 486 (1849)
..|..=.+.
T Consensus 276 a~le~yyQ~ 284 (499)
T COG4372 276 AQLEAYYQA 284 (499)
T ss_pred HHHHHHHHH
Confidence 555444433
No 115
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.34 E-value=17 Score=44.37 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=78.2
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000217 388 HSEEDSKRINKVADKAESEVERLKQ-------ALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGF 460 (1849)
Q Consensus 388 ~aee~~~~ln~~~e~~e~ev~~Lk~-------~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~ 460 (1849)
.++.-....+..+.........++. .|..+...--.+..++.--.++...++..++.|.+=....+.||+...
T Consensus 171 l~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~ 250 (309)
T PF09728_consen 171 LAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMS 250 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333444444444445555555 666666666778888888899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 461 AKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCI 512 (1849)
Q Consensus 461 ~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~si 512 (1849)
.+.+.+|..+.. ++.-.++.+..+.....+-.....++..+..-+
T Consensus 251 Kk~kklEKE~~~-------~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~ 295 (309)
T PF09728_consen 251 KKIKKLEKENQT-------WKSKWEKSNKALIEMAEERQKLEKELEKLKKKI 295 (309)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997766544 444444444444444444444444455544433
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.20 E-value=2.8 Score=47.97 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=61.0
Q ss_pred cCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHH
Q 000217 648 VSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALE 722 (1849)
Q Consensus 648 l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~-----mekLlEkns~LE~SLSd~n~ELegLR~K~k~LE 722 (1849)
+..........++.|.-++..|..-+.....|++.|..+... .++.-.+|.+||+-|..+...|+.--..+...=
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556788899999999999999999999999999885 368888999999999999988776555544433
Q ss_pred HH
Q 000217 723 EV 724 (1849)
Q Consensus 723 es 724 (1849)
.+
T Consensus 171 ~~ 172 (201)
T PF13851_consen 171 AA 172 (201)
T ss_pred HH
Confidence 33
No 117
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.19 E-value=13 Score=42.56 Aligned_cols=50 Identities=28% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000217 412 QALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1849)
Q Consensus 412 ~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~ 461 (1849)
+-|..-.++...+..++....++..+++..+.....++.++..++..+..
T Consensus 61 qll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666777777777777777777777666665333
No 118
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.10 E-value=29 Score=46.13 Aligned_cols=167 Identities=22% Similarity=0.243 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHH
Q 000217 559 TRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLK-EELNELNKK 637 (1849)
Q Consensus 559 ~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lk-ee~~~Ln~k 637 (1849)
..+..|-+.|..+.|+-.+|+ .++.=||-.+.+|..|..-=|.|++..+---+.|.-++...- -=+.---.|
T Consensus 242 ~Er~~L~~tVq~L~edR~~L~-------~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREK 314 (739)
T PF07111_consen 242 PEREELLETVQHLQEDRDALQ-------ATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREK 314 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHH
Confidence 334566677777776665543 266678888899999888888888866654555554443221 111222346
Q ss_pred HHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhhhhhhh
Q 000217 638 HQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI------MEKLLEKNAVLENSLSDLNVEL 711 (1849)
Q Consensus 638 ~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~------mekLlEkns~LE~SLSd~n~EL 711 (1849)
..+++=+|..-.+ ..+..++.|...+..|.+.......|++.|.--|++ |+.+-.| .|-..|+.+-...
T Consensus 315 VFaLmVQLkaQel---eh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sk--tLQ~ELsrAqea~ 389 (739)
T PF07111_consen 315 VFALMVQLKAQEL---EHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSK--TLQAELSRAQEAR 389 (739)
T ss_pred HHHHHHHhhHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence 7788877765333 235778889999999999999999999999999996 4444322 4667778888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhHh
Q 000217 712 EGVRDKVKALEEVCQNLLAEKSTLVA 737 (1849)
Q Consensus 712 egLR~K~k~LEesc~~L~~EKs~L~s 737 (1849)
.-+..+.+..|+....+.+-.++...
T Consensus 390 ~~lqqq~~~aee~Lk~v~eav~S~q~ 415 (739)
T PF07111_consen 390 RRLQQQTASAEEQLKLVSEAVSSSQQ 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877777543
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=30 Score=46.18 Aligned_cols=135 Identities=22% Similarity=0.304 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhh
Q 000217 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKL 669 (1849)
Q Consensus 590 k~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~L 669 (1849)
+.||-|+..|......|..-+. ...-.+...|.+++.+++....++-.+ ..||.....+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~-------Dvr~~~tt~kt~ie~~~~q~e~~isei--------------~qlqarikE~ 498 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQ-------DVRVDITTQKTEIEEVTKQRELMISEI--------------DQLQARIKEL 498 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-------hheeccchHHHHHHHhhhHHHHHHHHH--------------HHHHHHHHHH
Confidence 4455555555554444333222 111233345566666665544444433 3444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHH
Q 000217 670 KEVYERDRCEKVALLEKLEIMEK-LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQD 748 (1849)
Q Consensus 670 ke~~s~~~~EK~~L~~kLq~mek-LlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~ 748 (1849)
.+..-.+.-||..|-.+|..|+- ..+. +.....|......=+..|+.+++....|-.|.+.=+.++++
T Consensus 499 q~kl~~l~~Ekq~l~~qlkq~q~a~~~~-----------~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi 567 (1118)
T KOG1029|consen 499 QEKLQKLAPEKQELNHQLKQKQSAHKET-----------TQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDI 567 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhccCc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444556777777777776652 2211 22222333334455778899988888888888888888877
Q ss_pred HHHHHHhh
Q 000217 749 VNENLKKL 756 (1849)
Q Consensus 749 ~~~~l~~L 756 (1849)
..-.|+.|
T Consensus 568 ~n~qlkel 575 (1118)
T KOG1029|consen 568 FNNQLKEL 575 (1118)
T ss_pred HHHHHHHH
Confidence 75555443
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.83 E-value=5.8 Score=43.36 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000217 396 INKVADKAESEVERLKQ 412 (1849)
Q Consensus 396 ln~~~e~~e~ev~~Lk~ 412 (1849)
+..+|..++.+++....
T Consensus 22 le~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 22 LEDHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 121
>PLN02939 transferase, transferring glycosyl groups
Probab=93.74 E-value=26 Score=48.53 Aligned_cols=107 Identities=26% Similarity=0.319 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---------------HhHHHHHHHH
Q 000217 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVEL---------------EGVRDKVKAL 721 (1849)
Q Consensus 657 ~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~EL---------------egLR~K~k~L 721 (1849)
.-+..|.++|..||.....+..+=....+-=.-+-+|-.+.++|+.||.++...+ |.+=+||..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 3344455666666666555533322222111112234444666666666655543 2233333333
Q ss_pred HHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Q 000217 722 EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEV 774 (1849)
Q Consensus 722 Eesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~El 774 (1849)
+... ++-+...|+++++++-. ++|..|...||.||..+++..
T Consensus 306 ~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 347 (977)
T PLN02939 306 QDLL-----DRATNQVEKAALVLDQN------QDLRDKVDKLEASLKEANVSK 347 (977)
T ss_pred HHHH-----HHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhhHhh
Confidence 3222 22344566666665433 345555555666665555543
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.68 E-value=8.4 Score=42.17 Aligned_cols=61 Identities=28% Similarity=0.290 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 395 RINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE 455 (1849)
Q Consensus 395 ~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~E 455 (1849)
.+.+++..+..++..|..++..+.++++.+.-..+..-.+|+.||...+....-+...-.+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455555555566666667777777777777788888888887777766555544333
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=93.30 E-value=25 Score=48.67 Aligned_cols=77 Identities=32% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------hHhHHHHHHHHHHH
Q 000217 651 NPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE------LEGVRDKVKALEEV 724 (1849)
Q Consensus 651 ~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~E------LegLR~K~k~LEes 724 (1849)
..+|+-++|..||.-. .|.+..+|+++++ |+.=+.|-.|-..||.||..+|+. ++-++.|++-+++.
T Consensus 294 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (977)
T PLN02939 294 QYDCWWEKVENLQDLL-----DRATNQVEKAALV--LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER 366 (977)
T ss_pred hHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 3456677777777543 5667778888877 444455556667788888888765 46677777777777
Q ss_pred HHHHHHhhhH
Q 000217 725 CQNLLAEKST 734 (1849)
Q Consensus 725 c~~L~~EKs~ 734 (1849)
.+.-..+..+
T Consensus 367 ~~~~~~~~~~ 376 (977)
T PLN02939 367 LQASDHEIHS 376 (977)
T ss_pred HHhhHHHHHH
Confidence 6665555443
No 124
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.16 E-value=27 Score=42.74 Aligned_cols=173 Identities=26% Similarity=0.335 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000217 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASI-AEAEVQTLKEALARLETEREANIRQYQQ 318 (1849)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~-ae~E~~sLk~~la~L~~ekea~llQykq 318 (1849)
+.|+..|..|+.+....+..-...=.|...|..++.......-.++..|-. .+--..+|.-.|..|+.+++.-...|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333322223334444444443333332222222222 1224567788888888999888889988
Q ss_pred HHHHHHh-HHHHHhhhHHhHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHhHHHHHhhhhhHH
Q 000217 319 CLDKLSN-MEKNISRAEADAVELSDRAS-KAEIEAQTLKLDLARIEAEKEAAVVKYEECS-----RMISALEDKLLHSEE 391 (1849)
Q Consensus 319 ClEkis~-LE~~~s~aqeeak~lnera~-~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcL-----e~IS~LE~kI~~aee 391 (1849)
-.|.+.+ |..++.+.+.+-..+-.... +-+.-|..|...|..+..++.+ |+.+| ++|+ ||+.+-.-+
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~----~q~~le~Lr~EKVd-lEn~LE~EQ- 176 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA----KQEELERLRREKVD-LENTLEQEQ- 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHh-HHHHHHHHH-
Confidence 8887654 77777776655544432222 1333455666766666555432 34444 3333 444433222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000217 392 DSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1849)
Q Consensus 392 ~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq 430 (1849)
+.=|..|.+.+.+|..+|..++.++.+
T Consensus 177 ------------E~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 177 ------------EALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 223345666667777777777777663
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.10 E-value=8.1 Score=41.35 Aligned_cols=129 Identities=24% Similarity=0.320 Sum_probs=70.0
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHH
Q 000217 328 KNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEV 407 (1849)
Q Consensus 328 ~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev 407 (1849)
.+++..+.++..+..++..+...+..++.++.....--..+--.|..=+.+++..-..|.. ++.++
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~--------------lr~e~ 68 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ--------------LREEL 68 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHH
Confidence 4555566666777777777788888888887777665555555576666665554444333 34444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 408 ~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
..++..+..++...++....+...... -.++-..|..+|.....++.+ |..+|.-||.+++.+
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~s----------w~~qk~~le~e~~~~~~r~~d-------L~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEAS----------WEEQKEQLEKELSELEQRIED-------LNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 444444444444444444333322222 223333444454444444444 445566666665543
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.05 E-value=19 Score=41.42 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=76.8
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhH
Q 000217 660 KELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK 739 (1849)
Q Consensus 660 keLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk 739 (1849)
.+++.+|..|.+-......|.+-|..+|..-++-- .+|..+..-+..+...++.|+-....|...-..+..||
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-------~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-------QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666544433 34445555555555555555555555655566666777
Q ss_pred HHHHhhhHHHHHH-HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 000217 740 NSLFSQLQDVNEN-LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLE 785 (1849)
Q Consensus 740 ~~LvSQLq~~~~~-l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lE 785 (1849)
+.|-...+.+-.. -++..-||..||.++..+...+|....++.++-
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl 170 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL 170 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666655443 346678999999999999998877777666553
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.88 E-value=29 Score=42.43 Aligned_cols=141 Identities=20% Similarity=0.262 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000217 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELG 506 (1849)
Q Consensus 427 ~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~ 506 (1849)
.+..+-.|+..||.+-.+...|+.+|..|......+-..+=.+|. ++......++..|...++-+..+....+.||.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv---~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV---KQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH---HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777766544444333333332 22344444555555555666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHH---HHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHhhccccc
Q 000217 507 RLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLA---AELQNRA-QILKDMGTRNQSLQEEVEKVKEENKGLNEL 581 (1849)
Q Consensus 507 ~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~---~Ei~~~~-~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~ 581 (1849)
+|..-+-+-..|+. .+ +.-.+++...- .+.+..+ .+|.++..++......++...++.+.|..+
T Consensus 238 ~LlsqivdlQ~r~k-------~~----~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 238 SLLSQIVDLQQRCK-------QL----AAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHH-------HH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 77666655333322 21 11122222221 2223222 357778888888888888888888877654
No 128
>PRK11281 hypothetical protein; Provisional
Probab=92.78 E-value=61 Score=45.90 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=17.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000217 333 AEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1849)
Q Consensus 333 aqeeak~lnera~~AE~Ev~~LKqel~~l~e 363 (1849)
..+++..+.+++..|-.+.....+++..+..
T Consensus 78 ~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 78 QKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3445555566666666666666666555543
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.32 E-value=34 Score=41.87 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=21.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHH
Q 000217 763 LVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA 812 (1849)
Q Consensus 763 LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~ 812 (1849)
|-..|..+..+++..+.++.+++..+..+...-..+.+++..+..+|..+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444433
No 130
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.17 E-value=34 Score=41.58 Aligned_cols=220 Identities=21% Similarity=0.220 Sum_probs=130.0
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHH-H-------HHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHh
Q 000217 666 NSKLKEVYERDRCEKVALLEKLEIME-K-------LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVA 737 (1849)
Q Consensus 666 n~~Lke~~s~~~~EK~~L~~kLq~me-k-------LlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~s 737 (1849)
|..|+.+++.++-|-+++--+-|..+ + +-|+|.-|.++|. -.-..|-...--+.+..+.|.+
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lK----------LneE~ltkTi~qy~~QLn~L~a 70 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLK----------LNEETLTKTIFQYNGQLNVLKA 70 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHhhhHHHHHH
Confidence 44577777777777777766666543 2 3344444443331 1112333344557788888999
Q ss_pred hHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh-----------hhHHHHHHHH
Q 000217 738 EKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKS-----------CLITERVNLV 806 (1849)
Q Consensus 738 Ek~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s-----------~l~~Ek~~L~ 806 (1849)
|..+|-|.|+.-.++-+.|+-..--.=..|+.+-.+.+-.-+--.++|-.++--+++.. ++......|.
T Consensus 71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~Ls 150 (305)
T PF14915_consen 71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILS 150 (305)
T ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHH
Confidence 99999999998888777655433333333333333333333333566666766666444 4445556677
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhhh----h---chhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhH
Q 000217 807 SQLDIARKGLKDLEKSYAELEGRY----L---GLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFL 879 (1849)
Q Consensus 807 sQl~~~~~~l~~lek~~~ele~k~----~---~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~L 879 (1849)
.||...+.+...|+.++....|-. . .+|++..-+.+++.++---...+..+...+.. .-..+|.-++.|
T Consensus 151 QqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~----Kqes~eERL~Ql 226 (305)
T PF14915_consen 151 QQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG----KQESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHH
Confidence 777777777777777655433322 1 25555555556655555555444333322222 224567777888
Q ss_pred HHHhhhhhhhhHHHHHHHHh
Q 000217 880 QEEGLCRKKAYEEELDKALD 899 (1849)
Q Consensus 880 qEe~~~~~~~~eeE~dk~~~ 899 (1849)
|-++.+..+.+++-..|+.+
T Consensus 227 qsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 227 QSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777764
No 131
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.16 E-value=47 Score=43.14 Aligned_cols=26 Identities=35% Similarity=0.273 Sum_probs=18.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000217 670 KEVYERDRCEKVALLEKLEIMEKLLE 695 (1849)
Q Consensus 670 ke~~s~~~~EK~~L~~kLq~mekLlE 695 (1849)
+.....+-.||.+|.-+|+-++..+.
T Consensus 405 Q~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 405 QTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHH
Confidence 44555667788888888887776553
No 132
>PRK09039 hypothetical protein; Validated
Probab=92.13 E-value=9.7 Score=46.94 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 000217 433 EAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1849)
Q Consensus 433 ~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~ 491 (1849)
..+..+...++.++-++.+|+.+|+.+...+-.++......|......+...+.+...+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555444444444444444444443333
No 133
>PRK09039 hypothetical protein; Validated
Probab=92.07 E-value=15 Score=45.29 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000217 433 EAISILEHKLARAEEEAQRLHSELDNGFAKLKG 465 (1849)
Q Consensus 433 ~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~ 465 (1849)
.++..++..+.............|..++..+..
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a 148 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAA 148 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444333333333333333333333
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.43 E-value=34 Score=41.92 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHH
Q 000217 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKV 399 (1849)
Q Consensus 358 l~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~ 399 (1849)
++++.+-+.=.--+++.--..+..|+..+..++.+...+...
T Consensus 130 ~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~ 171 (325)
T PF08317_consen 130 YARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQ 171 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333333345555555555555554444443
No 135
>PF13514 AAA_27: AAA domain
Probab=91.35 E-value=86 Score=44.48 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 000217 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN 575 (1849)
Q Consensus 496 qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn 575 (1849)
..+.....++...+..+......+----..+..|.-+.-++.+.+.....+.......+.....+...+..++..+....
T Consensus 410 ~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1111)
T PF13514_consen 410 ARLQEAEQALEAAERRLAAALAALGPWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARL 489 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332222221123344555667778888888888887777777777777777777777777777
Q ss_pred hccccc
Q 000217 576 KGLNEL 581 (1849)
Q Consensus 576 ~~Lne~ 581 (1849)
..|..-
T Consensus 490 ~~l~~~ 495 (1111)
T PF13514_consen 490 RRLAAA 495 (1111)
T ss_pred HHHHhC
Confidence 766444
No 136
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.22 E-value=81 Score=43.96 Aligned_cols=119 Identities=22% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000217 411 KQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQK 490 (1849)
Q Consensus 411 k~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk 490 (1849)
..++..++-++.+-....+.+.++...+|..+......+.|+...+..+..++.+++.-...+-.....+..........
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~ 459 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE 459 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Confidence 44456677777777777778888888888888888888888888877777777777665555555555566666666555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000217 491 MGSQSQELTEKQKELGRLWTCIQEE--RLRFVEAETAFQTL 529 (1849)
Q Consensus 491 ~~~~~qEL~ek~~Ei~~L~~siqeE--~~k~~EaE~aL~~L 529 (1849)
....-.+|......+..+....++. .++..+|=.+|..+
T Consensus 460 ~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~ 500 (1141)
T KOG0018|consen 460 PYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRL 500 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHh
Confidence 5555556655555566555555543 45555555555544
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.21 E-value=46 Score=41.08 Aligned_cols=249 Identities=18% Similarity=0.229 Sum_probs=140.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 391 EDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL--------------EAISILEHKLARAEEEAQRLHSEL 456 (1849)
Q Consensus 391 e~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~--------------~kI~~LE~elS~sQeEv~RL~~Ei 456 (1849)
+....++..++.-..+-+..+.-+..|.+...++...+..+. ..-.+|-..+..+.+..++|..|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666555555555555555554333 233567788889999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhh-------------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 457 DNGFAKLKGAEEKCLLLERSN-------------------QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERL 517 (1849)
Q Consensus 457 e~~~~kLk~lE~~~~~LE~~~-------------------q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~ 517 (1849)
..+.++|.++..++..|-..+ ..+..+++++..++..+...+.-...|.+.+...---=..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988877764333 3344444444444433333333332222222111000001
Q ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc--------cc---ccccchH
Q 000217 518 RFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKG--------LN---ELNLSSA 586 (1849)
Q Consensus 518 k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~--------Ln---e~n~SS~ 586 (1849)
|+---...|..+=+-+...-=++.+|-+|-..+.+.|..++..+..+...|.+-|-.... ++ ..++...
T Consensus 169 K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v 248 (319)
T PF09789_consen 169 KAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGV 248 (319)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCccccc
Confidence 111111222222111222222677888888888888888877777777777766655541 11 2223333
Q ss_pred HHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 587 ESIKNLQD----------------EILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 587 ~sIk~LQd----------------Ei~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
.|-+..+. -++-||-+|..|=. -+++|+.- |.|++.....|-.+.+-++..+.
T Consensus 249 ~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle----~indK~~a---l~Hqr~tNkILg~rv~ELE~kl~ 317 (319)
T PF09789_consen 249 MSAKQVKELLESESNGCSLPASPQSISDLKSLATALLE----TINDKNLA---LQHQRKTNKILGNRVAELEKKLK 317 (319)
T ss_pred ccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHH----HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444 46677777776544 34566653 45788888888877777776654
No 138
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.09 E-value=68 Score=42.82 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhhcccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 561 NQSLQEEVEKVKEENKGLNELN--LSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 561 ~~~L~~ev~~~kEEn~~Lne~n--~SS~~sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
...+.+++..+.+++..++.+= ..+...|..+..++..+.....+++.+.+
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~ 445 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIE 445 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443321 12224677777777777776666666555
No 139
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.80 E-value=21 Score=38.23 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 000217 398 KVADKAESEVERLKQALGKLTEEKEALALQYQ-------QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKC 470 (1849)
Q Consensus 398 ~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~q-------q~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~ 470 (1849)
..+..+...+..++..+.....-...++..|. ...+.|..+...+...+.++..|..+++.....|...+..
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s- 95 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS- 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33344444444444444444444444444444 4577788888888888888888888888888888776654
Q ss_pred HHHHHhhHHHHHHHHHH
Q 000217 471 LLLERSNQTLHSELESM 487 (1849)
Q Consensus 471 ~~LE~~~q~L~~E~e~L 487 (1849)
.+.+...|..++..+
T Consensus 96 --w~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 96 --WEEQKEQLEKELSEL 110 (132)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 333444444444444
No 140
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.65 E-value=72 Score=42.41 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhHHHHHhhhHHhHHHHH
Q 000217 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ---YQQCLDKLSNMEKNISRAEADAVELS 341 (1849)
Q Consensus 265 ek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQ---ykqClEkis~LE~~~s~aqeeak~ln 341 (1849)
.....-+.++.++|..+..+...+...+.++..|...+.++..+.+..-.. +.+-+.-....-..+..+++++..|.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~ 400 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ 400 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334444555555555555555555555556666665555554333322211 11111111222222444555555566
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 000217 342 DRASKAEIEAQTLKLDLARIE 362 (1849)
Q Consensus 342 era~~AE~Ev~~LKqel~~l~ 362 (1849)
..+......+..|.+.-....
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555554443
No 141
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.31 E-value=69 Score=41.66 Aligned_cols=178 Identities=21% Similarity=0.234 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHH--HhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhh
Q 000217 692 KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLL--AEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1849)
Q Consensus 692 kLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~--~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd 769 (1849)
.||++...|+.-+-++.+++|..|.-+-.+.+.+.-.. ..+++ .+.-..-=|-|+....+=.-+.-+.-.||+.|-.
T Consensus 40 ~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~-~~g~e~EesLLqESaakE~~yl~kI~eleneLKq 118 (772)
T KOG0999|consen 40 ELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA-RDGEEREESLLQESAAKEEYYLQKILELENELKQ 118 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888887777666554432 22222 1111111122333333444556667777888877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Q 000217 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1849)
Q Consensus 770 ~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~ 849 (1849)
+..++...+...+.++--.+.++..++.+..++..|-..|....-+=..+=..|++|++.-.+||+ +|.
T Consensus 119 ~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK-------qVs---- 187 (772)
T KOG0999|consen 119 LRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK-------QVS---- 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-------HHH----
Confidence 788888888888888888888888888888888777777666666555555666666665555543 232
Q ss_pred hHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHH
Q 000217 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEE 892 (1849)
Q Consensus 850 sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~ee 892 (1849)
.++.|.-..-.|-+.|..|.|+.-++...+++
T Consensus 188 -----------~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 188 -----------NLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred -----------HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666777777776666655553
No 142
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.14 E-value=40 Score=40.05 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHH
Q 000217 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKV 399 (1849)
Q Consensus 347 AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~ 399 (1849)
++...+.|+-++... |+-.-.||-|....+|.|+..+++....-..+...
T Consensus 64 l~t~nqrl~~E~e~~---Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~ky 113 (333)
T KOG1853|consen 64 LETRNQRLTTEQERN---KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKY 113 (333)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 22334567777788999999988776554333333
No 143
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.49 E-value=61 Score=39.82 Aligned_cols=173 Identities=23% Similarity=0.300 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHH
Q 000217 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVEL 340 (1849)
Q Consensus 261 ~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~l 340 (1849)
.+-.-||..|..+-..+..++..+..++.....+++.|+++-.++++.-+.. .|-|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE-------EE~i----------------- 78 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE-------EEFI----------------- 78 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----------------
Confidence 4455566666655554444444444455555556666666665544221111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHhHHHHHhhhhhHHhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 000217 341 SDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE---CSRMISALEDKLLHSEEDSKRINKVA-DKAESEVERLKQALGK 416 (1849)
Q Consensus 341 nera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQ---cLe~IS~LE~kI~~aee~~~~ln~~~-e~~e~ev~~Lk~~i~k 416 (1849)
...|...|..++.||+...+.|.+ ||- -.|..+|..+...--.+-..+ ..-+.-+..|...|..
T Consensus 79 ----------sN~LlKkl~~l~keKe~L~~~~e~EEE~lt--n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~ 146 (310)
T PF09755_consen 79 ----------SNTLLKKLQQLKKEKETLALKYEQEEEFLT--NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIER 146 (310)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 123555566666777777777764 441 122222222222211111111 1123445566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHHHH
Q 000217 417 LTEEKEALALQYQQCLEAISILEHKLARAEE-EAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 417 L~Eekeal~l~~qq~~~kI~~LE~elS~sQe-Ev~RL~~Eie~~~~kLk~lE~~ 469 (1849)
|..+..+.+..+.++..--..||+.+-+-|+ -|+|||--++.+...=+.+...
T Consensus 147 Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 147 LEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666777776666668888876555 5678877776665555554443
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.26 E-value=7.2 Score=49.05 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhH
Q 000217 772 AEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1849)
Q Consensus 772 ~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL 851 (1849)
+++++.+...+.+=.-+.++.++.+.+.+++..+++-+-.++.+++...++..++.+---.|....+.-..++++++.++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 58888888888888888999999999999999999999999999999888887777555556666666666676666555
Q ss_pred HHHHHHhHhhhhchHHHHhhhHHhhhh
Q 000217 852 DAEKQQHASFVQLSETRLAGMESQISF 878 (1849)
Q Consensus 852 ~~e~qeh~~~~~~sE~~ls~LE~~i~~ 878 (1849)
. .+....+.+|.+|++|+.-
T Consensus 427 ~-------~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 427 K-------EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred H-------HHHHHHHHHHHHHHHHHHh
Confidence 4 4466778888888888743
No 145
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.21 E-value=15 Score=43.50 Aligned_cols=112 Identities=30% Similarity=0.429 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000217 291 AEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVV 370 (1849)
Q Consensus 291 ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~l 370 (1849)
|+.+-+-|+..|-+++.+...+--.+....+++-.|+.+...+++++..|...+..|+.....|.........|+..
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~--- 79 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ--- 79 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 55666777777888887777777778888999999999999999999999999999999999999888777777664
Q ss_pred HHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 371 KYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416 (1849)
Q Consensus 371 qyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~k 416 (1849)
|+.++..++..+.++......-+.++..|+..+..
T Consensus 80 -----------Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 -----------LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555554433
No 146
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.02 E-value=64 Score=39.41 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=51.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhhhhHHHHHHHHHHhhH
Q 000217 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE-----------LDNGFAKLKGAEEKCLLLERSNQ 478 (1849)
Q Consensus 410 Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~E-----------ie~~~~kLk~lE~~~~~LE~~~q 478 (1849)
|..+|.....-..++.-.++++...=..+|..+..+..|--+|..- .+-+.++|..+|..+..|+.+..
T Consensus 89 LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh 168 (305)
T PF14915_consen 89 LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELH 168 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555566666666667777776666654444322 24455555555555555554444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000217 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515 (1849)
Q Consensus 479 ~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE 515 (1849)
....-+..=.-.+-.....|.+.+..+..+....|.|
T Consensus 169 ~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne 205 (305)
T PF14915_consen 169 HTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNE 205 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333322221122233344555555555555555554
No 147
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.84 E-value=66 Score=39.32 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000217 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKG 465 (1849)
Q Consensus 408 ~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~ 465 (1849)
.+|.+.+..+.+.-+.+..+...+.+++..+=.......++|+-+..+-+..+.++..
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555554444444433
No 148
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.82 E-value=66 Score=39.31 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhhhhHHHH
Q 000217 430 QCLEAISILEHKLARAE------EEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 430 q~~~kI~~LE~elS~sQ------eEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
+++.+|..|+.++--.+ +.+..|..+|+....+..+.-+.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ek 180 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665554333 33444445555555555444433
No 149
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.77 E-value=83 Score=40.39 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 408 ~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
.+|+..|..|.+++=.+.+.-..+..++..|...+...|..+.--..|=+.+.-.|+-.-.....|...-.+-.-+-.+-
T Consensus 365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 34777777888888888887778888888888887777766555444444444444443333333322222211111122
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q 000217 488 VQKMGSQSQELTEKQKELGRLWTC 511 (1849)
Q Consensus 488 ~qk~~~~~qEL~ek~~Ei~~L~~s 511 (1849)
...-...+.-|..|-.||++|+..
T Consensus 445 vsqclEmdk~LskKeeeverLQ~l 468 (527)
T PF15066_consen 445 VSQCLEMDKTLSKKEEEVERLQQL 468 (527)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 222223344566666777777644
No 150
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.24 E-value=1.3e+02 Score=42.12 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCI 512 (1849)
Q Consensus 435 I~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~si 512 (1849)
....+.+.....+.+..|..+++.....|+++.+........+..|..+.+.+..++....+++...+.++..++..+
T Consensus 436 y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 436 YTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677778888888888888888888777766677788888888887777777777766666666665443
No 151
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.92 E-value=24 Score=47.15 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=113.7
Q ss_pred ccchhhhh--hhhHHHHHHHHHHHHhHhhhhccchhHHHHHHHhhhhhHHHHHhh---HHHHHHHHHhHHHHHHhhhhhh
Q 000217 1154 SNLSHIFK--DVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQN---SLLKQSLEKSENELVAIGCVRD 1228 (1849)
Q Consensus 1154 snLs~~~~--~~~~Ek~~~l~~L~e~l~~L~~~n~~L~~~v~~~~~kl~~~e~en---~~lk~~le~l~~~l~e~~si~~ 1228 (1849)
+-|-.|.. ++-.|.+.. |.-|.+.|+-|.+.+++|+..|...|.-- .-.-+. -+|--.+|++-
T Consensus 370 slLPav~g~tniq~EIALA-------~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n-----~El~sLqSlN~ 437 (861)
T PF15254_consen 370 SLLPAVSGSTNIQVEIALA-------MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCN-----LELFSLQSLNM 437 (861)
T ss_pred HhhhhhhccccchhhhHhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccc-----hhhHHHHHHHH
Confidence 34444433 344666655 56678899999999999998886544321 000000 13333444444
Q ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHHHHhhhhhhHHHhhhhhhhhhhhHHhHH
Q 000217 1229 QLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIH 1308 (1849)
Q Consensus 1229 ~L~~qi~~~~~~l~qk~~elleae~~~~~~~~~~~El~~~ve~Lk~~~~ea~~i~e~~ekqi~~Ls~~~~~q~~Ei~~l~ 1308 (1849)
.|- ++|.+.-.-+..+|..|.||-++++.++-++..-..|..+.+..+++.-..
T Consensus 438 ~Lq--------------~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~------------ 491 (861)
T PF15254_consen 438 SLQ--------------NQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ------------ 491 (861)
T ss_pred HHH--------------HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH------------
Confidence 433 456667777788999999999999999888877777776666666653222
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhHhhhHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHhhhhhhc
Q 000217 1309 ELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHELSRACENLEDRS 1388 (1849)
Q Consensus 1309 e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~~l~E~e~~~l~~dlq~ssv~~~L~eekv~El~~~ce~le~~~ 1388 (1849)
..-|+-.++.||++.-+.-+++-.-|.... .+-..|.+..
T Consensus 492 -----~d~e~~rik~ev~eal~~~k~~q~kLe~se-----------------------------------kEN~iL~itl 531 (861)
T PF15254_consen 492 -----FDIETTRIKIEVEEALVNVKSLQFKLEASE-----------------------------------KENQILGITL 531 (861)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-----------------------------------hhhhHhhhHH
Confidence 233444555555544444433332211111 1112233444
Q ss_pred ccchhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 000217 1389 NSNDIEINQLKEKANALECENGGLKAHLAAS 1419 (1849)
Q Consensus 1389 ~~~~~ei~~Lker~~~le~En~~lk~~l~~~ 1419 (1849)
-.||.||+.|++---.|..-.++|=.+|+.+
T Consensus 532 rQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D 562 (861)
T PF15254_consen 532 RQRDAEIERLRELTRTLQNSMAKLLSDLSVD 562 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5689999999998888888888887776654
No 152
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.59 E-value=60 Score=41.50 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=16.4
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 330 ISRAEADAVELSDRASKAEIEAQTLKLDL 358 (1849)
Q Consensus 330 ~s~aqeeak~lnera~~AE~Ev~~LKqel 358 (1849)
+...+.++..+..++..++.++..+++.-
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444455555566666666666666543
No 153
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=87.37 E-value=1.1e+02 Score=40.11 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhH
Q 000217 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELE 712 (1849)
Q Consensus 637 k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~-mekLlEkns~LE~SLSd~n~ELe 712 (1849)
+.+.++.+++.+-+|.+.....|..-++-...|.. ......+++.|.+||=. -..-.-.|+-+-.+|+.|-.=..
T Consensus 455 ~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~-~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe~lF~ 530 (570)
T COG4477 455 EIQDLMKELSEVPINMEAVSALVDIATEDMNTLED-ETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAERLFE 530 (570)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44788999999999999999999988877766654 45566889999998765 34455566777777776644433
No 154
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.36 E-value=26 Score=41.47 Aligned_cols=128 Identities=25% Similarity=0.291 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHH
Q 000217 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1849)
Q Consensus 402 ~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~ 481 (1849)
.++.+-.+|...+..++++.......+.....++..|+.....++++..+|.............|+........+...|.
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888888888888888888888888888888888777665555555555555445555555566
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTL 529 (1849)
Q Consensus 482 ~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~L 529 (1849)
.++......+.-+..+...+-.|...|+.-+..-......+-..|..+
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666667777666655544455555555544
No 155
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.36 E-value=25 Score=39.29 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=12.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000217 335 ADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1849)
Q Consensus 335 eeak~lnera~~AE~Ev~~LKqel~~l~e 363 (1849)
.+....+.+......++..+...+..+..
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 156
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.33 E-value=93 Score=39.54 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHH
Q 000217 233 GKAEMEILTLKNALAKLEAEKEAGLLQYRQSL-----------ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1849)
Q Consensus 233 ~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~sl-----------ek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1849)
.....|+..+++....|+..=|..+.+|..-+ -||..||.++++.- .-=..|+-.||++
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~----------elHq~Ei~~LKqe 284 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT----------ELHQNEIYNLKQE 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 35556666666666666666666655554433 46667777776532 2346799999999
Q ss_pred HHHHHHH
Q 000217 302 LARLETE 308 (1849)
Q Consensus 302 la~L~~e 308 (1849)
|+-+++.
T Consensus 285 La~~EEK 291 (395)
T PF10267_consen 285 LASMEEK 291 (395)
T ss_pred HHhHHHH
Confidence 9877654
No 157
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.29 E-value=1e+02 Score=39.69 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=56.1
Q ss_pred HHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 000217 372 YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQ-------CLEAISILEHKLAR 444 (1849)
Q Consensus 372 yqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq-------~~~kI~~LE~elS~ 444 (1849)
|+--|++ ..++..+..+++.+......+..-+.+-+.|.-++.+++...-.++.+|.. ....-..|+..+++
T Consensus 379 Y~viLEK-nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~Lsk 457 (527)
T PF15066_consen 379 YRVILEK-NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSK 457 (527)
T ss_pred hHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3333444 234555555666655555566667777778888888888888888888773 34445678899999
Q ss_pred HHHHHHHHHH
Q 000217 445 AEEEAQRLHS 454 (1849)
Q Consensus 445 sQeEv~RL~~ 454 (1849)
..++|.||..
T Consensus 458 KeeeverLQ~ 467 (527)
T PF15066_consen 458 KEEEVERLQQ 467 (527)
T ss_pred hHHHHHHHHH
Confidence 9999999843
No 158
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.13 E-value=67 Score=37.49 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=97.1
Q ss_pred HHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 000217 725 CQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVN 804 (1849)
Q Consensus 725 c~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~ 804 (1849)
......+...+..||+.+...|.++..++.+|-.++-.+-.-+++...-=+.|+..+.+.... +..+-..+.+=|+.
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~---l~~~eqry~aLK~h 140 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEER---LKKEEQRYQALKAH 140 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 334456667788999999999999999999999999888888888877777777444444433 33444455555666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhH
Q 000217 805 LVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGME 873 (1849)
Q Consensus 805 L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE 873 (1849)
-..+|+.....+..+...|...- ..|+.-.-+.-=++.-|..+|....++..++.+.-+..|+.++
T Consensus 141 AeekL~~ANeei~~v~~~~~~e~---~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 141 AEEKLEKANEEIAQVRSKHQAEL---LALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777776665433 2344444444445566666666777777777777777776553
No 159
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.85 E-value=75 Score=37.72 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---hcccccccc
Q 000217 516 RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN---KGLNELNLS 584 (1849)
Q Consensus 516 ~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn---~~Lne~n~S 584 (1849)
-....+|+.-|..+.+....-+.+...|...|...+ .+-+....||.+-+.....-. ..||..|..
T Consensus 152 e~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L---~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~ 220 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDL---NDYNAKLQDLRDLLNEAQNKTREAEDLNRANQK 220 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666777777766655443 333344444444444433222 344444433
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.46 E-value=3.2 Score=46.88 Aligned_cols=110 Identities=21% Similarity=0.366 Sum_probs=50.3
Q ss_pred HHHHHHHHHhHhhhhHHHHHhhHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 000217 1004 KEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAER 1083 (1849)
Q Consensus 1004 ~~l~~s~~~~q~en~~~~~E~svL~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~ 1083 (1849)
..+...+..++++...++-.++ ++...+..+..+...++.++......+..|+.++..|.....+|..++...
T Consensus 70 ~~le~~~~~l~~ELael~r~~~-------el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKG-------ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-------cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666444444 444444444555566666666666667777777777777777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhH
Q 000217 1084 NHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLD 1120 (1849)
Q Consensus 1084 ~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~ 1120 (1849)
..-.+.++.|+..|+.++.-+.+....++.||..+++
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888888877777777777776654
No 161
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.16 E-value=94 Score=38.20 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln 635 (1849)
.|+.|-.|+..++-.+++-..-+-..+.++..+..++..++..++.|.
T Consensus 252 k~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 252 KIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777776555555555666666665554444444444
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.11 E-value=1.2e+02 Score=39.86 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=15.4
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000217 533 HSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVE 569 (1849)
Q Consensus 533 hSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~ 569 (1849)
|..+-+++.....++...+..+.+.+.....|+.++.
T Consensus 320 yg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~ 356 (563)
T TIGR00634 320 YGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVD 356 (563)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444444444444444444444444333333333333
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.82 E-value=18 Score=38.66 Aligned_cols=100 Identities=34% Similarity=0.346 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHH
Q 000217 1028 VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGA 1107 (1849)
Q Consensus 1028 ~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s 1107 (1849)
+.++..|++.++-++.|...+..++.....+=-.+..+...|...|+.++. ...++..|..++.+|+.-
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-----------~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-----------LKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888777777777777777888887777743 344677788888888889
Q ss_pred HHHHHhhhhhhhHhhhHHHHHhhhHHHhhhh
Q 000217 1108 QQSLQDQNCKVLDEKKSLMKKVLDLQEEKHS 1138 (1849)
Q Consensus 1108 ~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~ 1138 (1849)
|.++-+=+..-.+++..|..-+.|+++-|..
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9988887777788888898888888877643
No 164
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.44 E-value=73 Score=41.84 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhccchh
Q 000217 256 GLLQYRQSLERLSNLESEVSHAREDSKGLSE 286 (1849)
Q Consensus 256 ~~lqY~~slek~~~LE~eis~aQ~~~~~L~e 286 (1849)
.+-.|.....+|..+..++...+.+...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 189 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQ 189 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5567777788888888887776665444433
No 165
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.61 E-value=1.6e+02 Score=39.65 Aligned_cols=308 Identities=18% Similarity=0.162 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHhhhhhchhHHHHHHHH
Q 000217 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA--------------RKGLKDLEKSYAELEGRYLGLEEEKESTLQ 842 (1849)
Q Consensus 777 lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~--------------~~~l~~lek~~~ele~k~~~lq~Eke~~~~ 842 (1849)
.+.+++.+..+-+.|.++.+...+|.++|.+.++.. .+.+.++...+..+..++..-..|+-..+.
T Consensus 52 y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~ 131 (660)
T KOG4302|consen 52 YKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYH 131 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777777777777776533 333333444444444444333333333333
Q ss_pred HHHHHHHhHHHH----HHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 000217 843 KVEELQFSLDAE----KQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKN 918 (1849)
Q Consensus 843 ~veel~~sL~~e----~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN 918 (1849)
|++.+-..|.-. .--......+|...+.+|-..+..|+++...|.+.+-+=...+. .+..-|.-..
T Consensus 132 qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~----------~l~~~Lg~~~ 201 (660)
T KOG4302|consen 132 QIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIK----------SLCSVLGLDF 201 (660)
T ss_pred HHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhCCCc
Confidence 333333222221 11123346677788889999999999988888776543221111 1111122111
Q ss_pred hhhHHHHHHHHH------hhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhhh
Q 000217 919 FSLLFECQKLLQ------ESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSH 992 (1849)
Q Consensus 919 ~~ll~EcQk~~e------as~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~L~i~~~~~~~d~~~~e~~~ 992 (1849)
.+..+...+-+. ...++..-|+.|..-+..+..++.-..+.+..|++.+..+-.-|++-..+.
T Consensus 202 ~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~----------- 270 (660)
T KOG4302|consen 202 SMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEER----------- 270 (660)
T ss_pred ccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH-----------
Confidence 212222222221 134678888889888888888888888988888888887766665433221
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhhhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 000217 993 QTLLDQVTGKLKEMQISVLKALEQNHQVVIENSIL-VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTE 1071 (1849)
Q Consensus 993 ~~~l~~i~~~~~~l~~s~~~~q~en~~~~~E~svL-~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle 1071 (1849)
..|.|+. ..-+.+.+.| ..++++...||.-|+.=|..--+||. .+...+|.+
T Consensus 271 -~~f~~~t-----------------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli---------~k~r~Elee 323 (660)
T KOG4302|consen 271 -QRFVHVT-----------------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELI---------EKKRSELEE 323 (660)
T ss_pred -HHHcccc-----------------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHH
Confidence 3333332 1113344444 66777777777776665555555542 234456666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhh
Q 000217 1072 INEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKH 1137 (1849)
Q Consensus 1072 ~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~ 1137 (1849)
+.+.+--... .+.+..-....+..--.++++|-++. -. ..+-.++...+-+.+.+..+..-
T Consensus 324 l~~~~h~s~~-~e~~~~f~~~~~ds~~~d~~ell~~~---d~-~i~k~keea~srk~il~~ve~W~ 384 (660)
T KOG4302|consen 324 LWRLLHYSEE-NESRRRFITYLIDSGTEDVLELLENI---DN-LIKKYKEEALSRKEILERVEKWE 384 (660)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHhccCCHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555443332 34455555555555555555555551 11 23334445555566666555543
No 166
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.35 E-value=16 Score=44.56 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 397 n~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
..++..++.+...++.+-...+.+.-.+..++.+..+....+...+...+..+.||
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666667777777778888888888888888888888888887
No 167
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=84.16 E-value=85 Score=35.97 Aligned_cols=118 Identities=30% Similarity=0.337 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhh
Q 000217 797 CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQI 876 (1849)
Q Consensus 797 ~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i 876 (1849)
.+......+.+|+.+.+.++..||++......-..++..|+...+.+ +++|.-+......
T Consensus 54 e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~----q~~l~~e~~~~~~---------------- 113 (178)
T PF14073_consen 54 ELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ----QVSLQRERQQDQS---------------- 113 (178)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHhccchh----------------
Confidence 33455889999999999999999999999999999998888766543 3333333110000
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHH
Q 000217 877 SFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956 (1849)
Q Consensus 877 ~~LqEe~~~~~~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe~E~~~~q~e~~~L 956 (1849)
-+.|+.+-+ . .|-.||-++--.-.+++.=|..||......+-...-+
T Consensus 114 --------------------~~~~klekL------e-------~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlv 160 (178)
T PF14073_consen 114 --------------------ELQAKLEKL------E-------KLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLV 160 (178)
T ss_pred --------------------hHHHHHHHH------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111 0 1223676766666677777778877777766666666
Q ss_pred HHHHHHHHHHH
Q 000217 957 VDQIKVLRVQL 967 (1849)
Q Consensus 957 l~~i~~Lr~gi 967 (1849)
.+.-.-|.+|+
T Consensus 161 QdkAaqLQt~l 171 (178)
T PF14073_consen 161 QDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHhhH
Confidence 66666666654
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.09 E-value=1.1e+02 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 000217 368 AVVKYEECSRMISALEDK 385 (1849)
Q Consensus 368 ~~lqyqQcLe~IS~LE~k 385 (1849)
.+.||..+-..|+.|+..
T Consensus 43 lLqqy~~~~~~i~~le~~ 60 (258)
T PF15397_consen 43 LLQQYDIYRTAIDILEYS 60 (258)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 345588888888888876
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.01 E-value=28 Score=41.83 Aligned_cols=153 Identities=26% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccc--cch-----HHHHH
Q 000217 518 RFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELN--LSS-----AESIK 590 (1849)
Q Consensus 518 k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n--~SS-----~~sIk 590 (1849)
++-+.|..+..|.+-.-|-|-.+.+|..-+++..++..+-.+.+..|+.+.+.+.|.-..|.... ++- ...|-
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 34444444444544455555555555555554444444444433333333333322222221100 000 11333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcch-----------hhhH
Q 000217 591 NLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF-----------GLSV 659 (1849)
Q Consensus 591 ~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~-----------~~~v 659 (1849)
-|--.+++-|...++|+ +++...|.+++....-+.+.--.|...+..-..| ....
T Consensus 99 ~lEgQl~s~Kkqie~Le--------------qelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~ 164 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLE--------------QELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKY 164 (307)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhH
Confidence 34444555555555544 4555667776655443332222222222222222 3566
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHH
Q 000217 660 KELQDENSKLKEVYERDRCEKVALL 684 (1849)
Q Consensus 660 keLQ~~n~~Lke~~s~~~~EK~~L~ 684 (1849)
.+|++...+=-++-..+.+|--+|.
T Consensus 165 e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 165 EELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 6666666555555555555555554
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.84 E-value=1.7e+02 Score=39.21 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHH
Q 000217 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALA 303 (1849)
Q Consensus 261 ~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la 303 (1849)
.....++..++.++...+.+...+.......+.++..+...+.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665555554444444444444444333
No 171
>PRK10869 recombination and repair protein; Provisional
Probab=82.98 E-value=1.7e+02 Score=38.62 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000217 528 TLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572 (1849)
Q Consensus 528 ~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~k 572 (1849)
.|.+=|..+-+++-....++...++.+.+.+.....|+.++..++
T Consensus 310 ~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~ 354 (553)
T PRK10869 310 SLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHH 354 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 344447788888888888888888888888877777777777763
No 172
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.12 E-value=1.3e+02 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 404 e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
+..+++|+++..-|.+.|..+...++.+.+.-..-=..+.+.+.-..+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~ 53 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTA 53 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666655554444444444444444444
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.12 E-value=9.6 Score=38.07 Aligned_cols=63 Identities=33% Similarity=0.402 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 584 SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 584 SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
.+..+|.=||.||..||+.+..|..|+..-...|.+|.++..+++.+-..-..+..+|.-.|.
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346788999999999999999999999988889999999999999988888877777776554
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.81 E-value=1.2e+02 Score=37.41 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 000217 537 QDELRSLAAEL 547 (1849)
Q Consensus 537 QeE~~~L~~Ei 547 (1849)
-.|+..|...+
T Consensus 270 ~~Ei~~Lk~~~ 280 (312)
T smart00787 270 FKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 175
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.77 E-value=18 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhH
Q 000217 353 TLKLDLARIEAEKEAAVVKYEECSRMIS 380 (1849)
Q Consensus 353 ~LKqel~~l~eEKEa~~lqyqQcLe~IS 380 (1849)
.|+..+.....|.+. |..||..+.
T Consensus 13 ~l~~~~~~~~~E~~~----Y~~fL~~l~ 36 (314)
T PF04111_consen 13 QLDKQLEQAEKERDT----YQEFLKKLE 36 (314)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344444444445543 777776665
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.51 E-value=62 Score=39.81 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhh
Q 000217 721 LEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDA 770 (1849)
Q Consensus 721 LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~ 770 (1849)
++.....|......+.+++..|..+++.+..-+..|.+++..|...+..+
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555666666666666555555555555555444443
No 177
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=81.23 E-value=1.6e+02 Score=37.10 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=25.4
Q ss_pred cCCCCCCchhhhhhhhhHHHHHHHHHHHHhhhhhhH
Q 000217 19 SHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSF 54 (1849)
Q Consensus 19 sHi~~~~skwL~~~l~~md~kvk~~lkli~ed~dsf 54 (1849)
|--+|.-|.|.+.-+.--+...+..+.-|.+.+|++
T Consensus 26 S~~t~~t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L 61 (593)
T KOG4807|consen 26 SLTTTSTSQWKKHWFVLTDSSLKYYRDSTAEEADEL 61 (593)
T ss_pred cccCcchHHHHHHHHHHhHHHHHHHHHHHHHhcccC
Confidence 344667778888887777777777777777666654
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.03 E-value=35 Score=43.38 Aligned_cols=83 Identities=25% Similarity=0.159 Sum_probs=65.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 709 VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC 788 (1849)
Q Consensus 709 ~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~ 788 (1849)
++|++.|.....+-.-+.+|+.+-+.+.++|.++...++....++.++.++...+..-=-.+.+....++.|++.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 48888898888888888889999999999998888888888888887777777776555556667777777777777665
Q ss_pred HHh
Q 000217 789 LLL 791 (1849)
Q Consensus 789 ~~l 791 (1849)
...
T Consensus 427 ~~~ 429 (493)
T KOG0804|consen 427 KEA 429 (493)
T ss_pred HHH
Confidence 544
No 179
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.61 E-value=1.8e+02 Score=37.32 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLK 355 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LK 355 (1849)
|+.++.++..++-+...++.++..++..+..|.
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 180
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.42 E-value=59 Score=35.01 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 472 LLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERL 517 (1849)
Q Consensus 472 ~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~ 517 (1849)
.|+.+...|+...+.+.+.++.+..++++.+..|..++......+.
T Consensus 72 ~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666777777777777777777777766665443
No 181
>PF13166 AAA_13: AAA domain
Probab=80.37 E-value=2.2e+02 Score=38.15 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=17.0
Q ss_pred HhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 000217 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQ 412 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~ 412 (1849)
.++.+-..|..+.......|..+.+...+...++.
T Consensus 364 ~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~ 398 (712)
T PF13166_consen 364 DIDELNSIIDELNELIEEHNEKIDNLKKEQNELKD 398 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555554444444
No 182
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=80.15 E-value=80 Score=39.63 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHH
Q 000217 233 GKAEMEILTLKNALAKLEAEKEAGLLQYRQSLE-----------RLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1849)
Q Consensus 233 ~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~sle-----------k~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1849)
+.-.+|+...+.+.+.|+.--|..+-+|+.-+- ||..||.+++++ ..--++|+-+||++
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdl----------teLqQnEi~nLKqE 332 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDL----------TELQQNEIANLKQE 332 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHH
Confidence 345677777777777777776777766665442 566777777653 22346789999999
Q ss_pred HHHHHHHHHH-------hH-HHHHHHHHHHHhHHHHHhh
Q 000217 302 LARLETEREA-------NI-RQYQQCLDKLSNMEKNISR 332 (1849)
Q Consensus 302 la~L~~ekea-------~l-lQykqClEkis~LE~~~s~ 332 (1849)
++-+++.-+- .+ -..-+|.-+|++||..+-+
T Consensus 333 lasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~ 371 (455)
T KOG3850|consen 333 LASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQ 371 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877644110 00 0134788888888877654
No 183
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.07 E-value=32 Score=42.09 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhh
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENS 667 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~ 667 (1849)
++++|.+++.-+-|...+-=---..-=++|.+|..++-.+|+.+..+..-+..+-..+ ++..-.+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~--------------~eK~~elE 143 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY--------------REKIRELE 143 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 7888888777776665542111121237899999999999999998887666555543 23344567
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhH----h-----HHHHHHHHHHH-HHHHHHhhhH
Q 000217 668 KLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENS---LSDLNVELE----G-----VRDKVKALEEV-CQNLLAEKST 734 (1849)
Q Consensus 668 ~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~S---LSd~n~ELe----g-----LR~K~k~LEes-c~~L~~EKs~ 734 (1849)
-+|..+..+..|.+.|-++|..-+.|+++|-+.=.+ ..+.+.++. + ..+....|+.. -.+|..-..-
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkK 223 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKK 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHH
Confidence 889999999999999999999999999997665544 333333333 1 22333344444 3345445566
Q ss_pred hHhhHHHHHhhhHHHHHHH
Q 000217 735 LVAEKNSLFSQLQDVNENL 753 (1849)
Q Consensus 735 L~sEk~~LvSQLq~~~~~l 753 (1849)
|+.||..|+.|++.....|
T Consensus 224 l~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 224 LADEKEELLEQVRKLKLQL 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7788888888887665544
No 184
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.90 E-value=1.5e+02 Score=35.95 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHh-hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHH
Q 000217 678 CEKVALLEKLEIMEKLLEKNA----VLE-NSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN 752 (1849)
Q Consensus 678 ~EK~~L~~kLq~mekLlEkns----~LE-~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~ 752 (1849)
..+..|-.+++.|..=-.-.. +|. +||||+-.-+..+-.-+..=-.-....+.++-.|-.=+..+-..++
T Consensus 98 ~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e----- 172 (265)
T COG3883 98 ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLE----- 172 (265)
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 334444555555554222222 333 7888888777666554433222223333333332222222222222
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLV 806 (1849)
Q Consensus 753 l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~ 806 (1849)
.|..-.-++..-+..|..+..++......+....+....++..|.
T Consensus 173 ---------~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 173 ---------TLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222222222233333444445555555555555566666666665
No 185
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.81 E-value=2.9e+02 Score=39.13 Aligned_cols=141 Identities=20% Similarity=0.199 Sum_probs=70.6
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhH--hHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000217 705 SDLNVELEGVRDKVKALEEVCQNLLAEKST--LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1849)
Q Consensus 705 Sd~n~ELegLR~K~k~LEesc~~L~~EKs~--L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k 782 (1849)
.|+..|++-|+.-+.+--+.-.-+-.+..= .-.|+.....||+.....++.+.+.+..|...|.........+..+..
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355566666665555433332222222222 334566666666666666666666666666666633333333444444
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Q 000217 783 SLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE 845 (1849)
Q Consensus 783 ~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~ve 845 (1849)
.++.-++.-..+-.++..+...+..+|.-.......+++-...+.++...++..-+...+++.
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333344444444444444444444445555555555555555555544444444
No 186
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=79.23 E-value=3.2e+02 Score=39.28 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 400 ~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
..-+..++..++.+......--+-...+.+-...++..++..+...|+.+++-
T Consensus 182 ~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 182 SAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555555666666666666666666666666554
No 187
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=78.84 E-value=27 Score=46.78 Aligned_cols=126 Identities=24% Similarity=0.304 Sum_probs=78.2
Q ss_pred HhhhhccchhHHHHHHHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHHHh
Q 000217 1178 LDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCS 1257 (1849)
Q Consensus 1178 l~~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~~~~~~l~qk~~elleae~~~~~ 1257 (1849)
|..|++.|--|..+|...-+-++.+...|..|-+.++...++-.. ....+..||.+|++..+.+.
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~--------------~~~~~~ekd~~l~~~kq~~d- 493 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKR--------------LRKMFQEKDQELLENKQQFD- 493 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHH-
Confidence 456777788888888877777888888887777777666664433 33445566666666555332
Q ss_pred hhHhh-----HHHHHHHhhhhhhhhhhHHHHhhhhhhHHHhhhhhhhhhhhHHhHHHhhHHHHHHHHHHHHHh
Q 000217 1258 LQNER-----TELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEEL 1325 (1849)
Q Consensus 1258 ~~~~~-----~El~~~ve~Lk~~~~ea~~i~e~~ekqi~~Ls~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~ 1325 (1849)
++..+ .|.--.|..++-+.+ -.+-|++|+.++-. .+|.||.-|++.+++||.=|.+|.-.|
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe-----~sekEN~iL~itlr--QrDaEi~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLE-----ASEKENQILGITLR--QRDAEIERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH-----HHHhhhhHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11111 011111222333333 34678899887632 237799999999999998888755533
No 188
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.73 E-value=88 Score=41.31 Aligned_cols=135 Identities=19% Similarity=0.153 Sum_probs=100.7
Q ss_pred hHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHH
Q 000217 735 LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARK 814 (1849)
Q Consensus 735 L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~ 814 (1849)
|..-|+.|+.|...+++..+---|| +-|++.=+++.|.|+..-||.+|...--.++|.+.|=.|...|..+.-
T Consensus 116 Le~dkesL~LQvsvLteqVeaQgEK-------IrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL 188 (861)
T KOG1899|consen 116 LEMDKESLQLQVSVLTEQVEAQGEK-------IRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL 188 (861)
T ss_pred HhcchhhheehHHHHHHHHHHhhhh-------HHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH
Confidence 3344555666666665555443344 444555678889999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhH
Q 000217 815 GLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFL 879 (1849)
Q Consensus 815 ~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~L 879 (1849)
++-.+|++--+-++|....+.+++-.- .-+...+..|+-.|.--.+++...++-|.++++.-
T Consensus 189 kltalEkeq~e~E~K~R~se~l~qevn---~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK 250 (861)
T KOG1899|consen 189 KLTALEKEQNETEKKLRLSENLMQEVN---QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEK 250 (861)
T ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhh
Confidence 999999998888888888777765443 12223345566667777889998888888887544
No 189
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.41 E-value=2.1e+02 Score=37.33 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=125.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---C-------CcchhhhhhhhHHHHHHHHhHHHHHHHHH
Q 000217 941 KLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADH---G-------CETKMEQDQSHQTLLDQVTGKLKEMQISV 1010 (1849)
Q Consensus 941 eLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~L~i~~~~---~-------~~d~~~~e~~~~~~l~~i~~~~~~l~~s~ 1010 (1849)
.|.+.|..+.+.+..-.++|--|+-.+++-.+-|++-.-. + .+-+..... ..++. --++-|+.-+
T Consensus 94 ~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~---S~~~~--~~~EaL~ekL 168 (596)
T KOG4360|consen 94 ALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESR---SAFQR--ELLEALQEKL 168 (596)
T ss_pred hhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcch---hhHHH--HHHHHHHhhc
Confidence 4566777777777777788877777777755555543211 1 111112222 22333 2245677777
Q ss_pred HHhHhhhhHHHHHhhHHHH-----------HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000217 1011 LKALEQNHQVVIENSILVA-----------LLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVE 1079 (1849)
Q Consensus 1011 ~~~q~en~~~~~E~svL~t-----------~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~ 1079 (1849)
..+.++|..+-.+-..|.+ ..+.+..+.++...+-..+-+|+..+..++..++.++.+|+-.--.++.+
T Consensus 169 k~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 169 KPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred CChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888887777666643 34566778888999999999999999999999999988887766666665
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHH
Q 000217 1080 VAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQE 1134 (1849)
Q Consensus 1080 ~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e 1134 (1849)
+- ++..|.+-+..-|..-.++...++.|--.+-+++-.+...|-+-.+
T Consensus 249 ~k-------~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eaee 296 (596)
T KOG4360|consen 249 IK-------YLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEE 296 (596)
T ss_pred HH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 7777777777777788888888888877777666666665555333
No 190
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.34 E-value=2.1e+02 Score=36.76 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000217 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKG 465 (1849)
Q Consensus 427 ~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~ 465 (1849)
-|.-+...+...-..+...+.++......|......+.+
T Consensus 151 ~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~ 189 (420)
T COG4942 151 YYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTT 189 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 191
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=78.31 E-value=1.8e+02 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 492 GSQSQELTEKQKELGRLWTCIQEERLRFVEAE 523 (1849)
Q Consensus 492 ~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE 523 (1849)
.....++...+.+++..+.....=..|+.++.
T Consensus 372 ~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 372 GEQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555444444443
No 192
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=78.20 E-value=1.3e+02 Score=35.65 Aligned_cols=50 Identities=24% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 000217 338 VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLL 387 (1849)
Q Consensus 338 k~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~ 387 (1849)
+++++.+.+++.....+++.++.....+-...-+|++|...+.+++++-.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999888889999999888888844
No 193
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.14 E-value=1.5e+02 Score=34.82 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH----
Q 000217 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL---- 473 (1849)
Q Consensus 398 ~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~L---- 473 (1849)
..+..+-.+-+.+-.++..++..+-+++.+|..+...|..+-. .=..|...+.....++...++++..|
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~-------NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA 141 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK-------NEETLKKCIEEYEERLKKEEQRYQALKAHA 141 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666667777777777777766655544421 22233344444444444444443322
Q ss_pred ------------------HHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000217 474 ------------------ERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTC 511 (1849)
Q Consensus 474 ------------------E~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~s 511 (1849)
..+...|+..+....-++.++...|.+|-+|.+.|-..
T Consensus 142 eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkI 197 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKI 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555455555555555555555555433
No 194
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=77.39 E-value=2.2e+02 Score=36.39 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHH-----HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHH
Q 000217 366 EAAVVKYEECS-----RMISALEDKLLHSEEDSKRINKVADKAESEVE--------RLKQALGKLTEEKEALALQYQQC 431 (1849)
Q Consensus 366 Ea~~lqyqQcL-----e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~--------~Lk~~i~kL~Eekeal~l~~qq~ 431 (1849)
+..+.||++|+ .+|-+||++-..-+.++..|...+-.+++.++ .|=+.+.+|+.++..++..|+|-
T Consensus 149 Eq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 149 EQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45677888886 78888888765555555555555444444433 44455678888888888888754
No 195
>PF15294 Leu_zip: Leucine zipper
Probab=76.89 E-value=86 Score=38.11 Aligned_cols=93 Identities=26% Similarity=0.242 Sum_probs=66.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhhhhchhHHHHH
Q 000217 762 FLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKG--LKDLEKSYAELEGRYLGLEEEKES 839 (1849)
Q Consensus 762 ~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~--l~~lek~~~ele~k~~~lq~Eke~ 839 (1849)
.|-....+++.|.+.++.+++.+|..|.....+++-+.+....|..-....... +..-....++|+.+...++.+.++
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH
Confidence 377788999999999999999999999988555544444444443311111111 123444788899999999999999
Q ss_pred HHHHHHHHHHhHHHH
Q 000217 840 TLQKVEELQFSLDAE 854 (1849)
Q Consensus 840 ~~~~veel~~sL~~e 854 (1849)
++.+.+..+.+|...
T Consensus 209 ~~~d~~~~~k~L~e~ 223 (278)
T PF15294_consen 209 ALQDKESQQKALEET 223 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887777544
No 196
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.54 E-value=3e+02 Score=37.63 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 000217 492 GSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 492 ~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
...+.|.+.|.++++.++..+.+
T Consensus 552 delskE~esk~~eidi~n~qlke 574 (1118)
T KOG1029|consen 552 DELSKETESKLNEIDIFNNQLKE 574 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 33344555555555555544444
No 197
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.31 E-value=1.1e+02 Score=41.53 Aligned_cols=76 Identities=26% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 000217 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQ 502 (1849)
Q Consensus 427 ~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~ 502 (1849)
.|.....++..++..-+...+.+..|..++..+...+..+...+..+...++.....+-.+...+......+.++.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666555544444444444443333333333333333
No 198
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.27 E-value=1.5e+02 Score=39.46 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=60.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-------HHHHhhHHHH
Q 000217 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCL-------LLERSNQTLH 481 (1849)
Q Consensus 409 ~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~-------~LE~~~q~L~ 481 (1849)
.++..+..|+-+++++++|+..+-+. +.-+-+-++-|...|+....+|+..|+..+ .||.++-.|.
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteq-------VeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLm 180 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQ-------VEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLM 180 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHH-------HHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHH
Confidence 45666777888888888887655443 334455666677777777888888877543 6899999999
Q ss_pred HHHHHHHHHhhhhhHH
Q 000217 482 SELESMVQKMGSQSQE 497 (1849)
Q Consensus 482 ~E~e~L~qk~~~~~qE 497 (1849)
+|..+|.-++....++
T Consensus 181 aevSeLKLkltalEke 196 (861)
T KOG1899|consen 181 AEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999998887777654
No 199
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.11 E-value=88 Score=40.57 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000217 236 EMEILTLKNALAKLEAEKE----AGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1849)
Q Consensus 236 e~EI~~Lkk~i~~LqtEKE----~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea 311 (1849)
+.|+-.|.-....|.+|-= --...|.-|+-++-++-.++..+|+.+.+.. ..
T Consensus 172 ~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt--------------~e---------- 227 (596)
T KOG4360|consen 172 EEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKT--------------KE---------- 227 (596)
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------
Confidence 4555555555555555431 1123455555555555555555554432222 22
Q ss_pred hHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhH
Q 000217 312 NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSE 390 (1849)
Q Consensus 312 ~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~ae 390 (1849)
.++-.|-+++|.+++-.+++.++++.=..+..-.-+.+.++.--.++.|.+..-=+|.+|+....+.++++.++.
T Consensus 228 ----l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 228 ----LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 233345677888888888888888876666667777777887778887777777779999999888888876654
No 200
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.45 E-value=2.5e+02 Score=36.10 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-----HHHHHHHhhHHHH-------HHH
Q 000217 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE-----KCLLLERSNQTLH-------SEL 484 (1849)
Q Consensus 417 L~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~-----~~~~LE~~~q~L~-------~E~ 484 (1849)
+..++-.+.-+|.-+++-...-|.--.++=.+=.|.+.||.....+-+.++. +.+.|+.++..|. +..
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444555556665555555544443 2233444444444 444
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHh------
Q 000217 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG------ 558 (1849)
Q Consensus 485 e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE------ 558 (1849)
+++..-.+-.. ..++.+..-+-.+..-+..---.|..++.-|--.|+=+--|..++...-...-..+
T Consensus 328 dklaee~qr~s-------d~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgr 400 (502)
T KOG0982|consen 328 DKLAEEDQRSS-------DLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGR 400 (502)
T ss_pred HHHhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 44433222222 23333333333333333344444555544443333333333333332221111111
Q ss_pred --hhhHHHHHHHHHHHHHhhcccccc
Q 000217 559 --TRNQSLQEEVEKVKEENKGLNELN 582 (1849)
Q Consensus 559 --~~~~~L~~ev~~~kEEn~~Lne~n 582 (1849)
.+-..|+.+|..++-.|..|.++|
T Consensus 401 sSaRe~eleqevkrLrq~nr~l~eqn 426 (502)
T KOG0982|consen 401 SSAREIELEQEVKRLRQPNRILSEQN 426 (502)
T ss_pred hhHHHHHHHHHHHHhccccchhhhhh
Confidence 456678888888888888887776
No 201
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=75.00 E-value=3.3e+02 Score=37.33 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 410 LKQALGKLTEEKEA---LALQYQQCLEAISILEHKLARAEE 447 (1849)
Q Consensus 410 Lk~~i~kL~Eekea---l~l~~qq~~~kI~~LE~elS~sQe 447 (1849)
|...|.+|..+++- .+..|.-+..|+..|-.+.|.+..
T Consensus 460 L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~ 500 (762)
T PLN03229 460 LNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANS 500 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhccc
Confidence 33445555555554 445566777788888877777543
No 202
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.16 E-value=2.3e+02 Score=35.14 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 404 e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
+..+..+...+...+.........+..+.++|..|+..+..+..+..+|..+++....+|..+..=
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 555555555566666666666666677777777777777777777777777777666666665543
No 203
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.06 E-value=4e+02 Score=37.83 Aligned_cols=227 Identities=19% Similarity=0.178 Sum_probs=118.3
Q ss_pred hHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHH
Q 000217 733 STLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA 812 (1849)
Q Consensus 733 s~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~ 812 (1849)
..|..=|..|.-||..+..+-. +.+.-+.+++.++..+..++..++.+-.++-.+.++...+.++....-=.|..+
T Consensus 655 ~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i 730 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEI 730 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 3455556666666665554111 444555556666666666666666555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhchhHHH--HHH------HHHHHHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhh
Q 000217 813 RKGLKDLEKSYAELEGRYLGLEEEK--EST------LQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGL 884 (1849)
Q Consensus 813 ~~~l~~lek~~~ele~k~~~lq~Ek--e~~------~~~veel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~ 884 (1849)
..++.+++...-+|+.+...++..+ ..| +.+-++-.. .++.+.-...=+.+++.++.+|.+..+ .
T Consensus 731 ~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-----~~~~a~k~~ef~~q~~~l~~~l~fe~~--~ 803 (1141)
T KOG0018|consen 731 KRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-----QQEFAKKRLEFENQKAKLENQLDFEKQ--K 803 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhheec--c
Confidence 5555555555555555555544444 111 222232222 122222222335677777777766644 2
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHH----------HHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHH
Q 000217 885 CRKKAYEEELDKALDAQIEIFIT----------QKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMR 954 (1849)
Q Consensus 885 ~~~~~~eeE~dk~~~aqiei~il----------qk~i~Dle~kN~~ll~EcQk~~eas~~s~~lIseLe~E~~~~q~e~~ 954 (1849)
-....++-....+.+++.++==+ -..+..|+.+|-+.+...+.-+ .-..+....|-.+...++-++.
T Consensus 804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~---~e~~k~~~~~~~~~tkl~~~i~ 880 (1141)
T KOG0018|consen 804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEI---NEVKKILRRLVKELTKLDKEIT 880 (1141)
T ss_pred cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhh
Confidence 22222232222222222222111 1223677777744333332221 2245556666677777888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000217 955 SLVDQIKVLRVQLYQLLEI 973 (1849)
Q Consensus 955 ~Ll~~i~~Lr~gi~qvl~~ 973 (1849)
++-..|+.+....|-.|..
T Consensus 881 ~~es~ie~~~~er~~lL~~ 899 (1141)
T KOG0018|consen 881 SIESKIERKESERHNLLSK 899 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 8888888888888876555
No 204
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.38 E-value=2e+02 Score=38.26 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHH---HhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000217 517 LRFVEAETAFQTL---QHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572 (1849)
Q Consensus 517 ~k~~EaE~aL~~L---e~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~k 572 (1849)
.+.-+.|..+..+ .+=|..+.+++-....++...+..|++.+.+...|+.++..+.
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~ 355 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLK 355 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3344444444443 3347888888888888887777777777777777777666653
No 205
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.13 E-value=24 Score=34.63 Aligned_cols=62 Identities=34% Similarity=0.393 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 584 SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645 (1849)
Q Consensus 584 SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql 645 (1849)
.+..+|.=||.||..|||.+.-|-.|+.-.-..++||.++-..+|.+-..-..+..++.-.|
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44678999999999999999999999987778899999888777777666666666665444
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.39 E-value=1.5e+02 Score=38.76 Aligned_cols=55 Identities=33% Similarity=0.272 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 000217 414 LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468 (1849)
Q Consensus 414 i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~ 468 (1849)
+..-.+.++.|..+.++..++|..||.+-.+-.-|+.-.+..++...+++.+++.
T Consensus 297 l~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLek 351 (518)
T PF10212_consen 297 LLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEK 351 (518)
T ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999999999999999888777554433333344455555554444
No 207
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.05 E-value=2.2e+02 Score=33.91 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 451 RLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 451 RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
.++.-+.....+|.++...+..- ...-.+...++.-+....+++..+..+|...+..+.+
T Consensus 182 ~i~~~L~~~~~kL~Dl~~~l~eA----~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 182 AIRDDLNDYNAKLQDLRDLLNEA----QNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554432211 2234456666666777777777777777777665555
No 208
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.04 E-value=67 Score=38.02 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 000217 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK 576 (1849)
Q Consensus 497 EL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~ 576 (1849)
++..|-.+++++...|-.++..+-..+.-|..+. .|...|..|-..-+++|.++..-++.|+..|...+.+..
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~-------kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYR-------KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666655555554444444444443 333334444444444444444444444444444433322
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000217 577 GLNELNLSSAESIKNLQDEILSLRETIGKLEAE-VE 611 (1849)
Q Consensus 577 ~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~E-v~ 611 (1849)
. ....|..+++|...||+-...+..| +|
T Consensus 78 ~-------~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 78 K-------RQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 1335666777777777766665555 44
No 209
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=71.62 E-value=2.8e+02 Score=34.98 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=30.0
Q ss_pred CChhhhhhhhHHHHHHHHHHHHHHHhHHHHH---HHhHHHHHHHHHHHHHHHHHH
Q 000217 226 PSESERMGKAEMEILTLKNALAKLEAEKEAG---LLQYRQSLERLSNLESEVSHA 277 (1849)
Q Consensus 226 ~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~---~lqY~~slek~~~LE~eis~a 277 (1849)
-|...|...-..||..|+..+...++....+ ...+..-...+..|..+|..+
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 3455666677777777777777776543322 333433445555555555555
No 210
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.30 E-value=2.2e+02 Score=32.82 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000217 313 IRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEK 365 (1849)
Q Consensus 313 llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEK 365 (1849)
+.+...|.+.+..++..+..+...+..+...+..++.++..++.....+-.-.
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777776666666666666666655554433
No 211
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=69.12 E-value=5.3e+02 Score=37.20 Aligned_cols=50 Identities=6% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 000217 605 KLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN 654 (1849)
Q Consensus 605 klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~ 654 (1849)
.|=.++...-..-+.|.++-...+.-.+.+..-...+.+|++.++.++--
T Consensus 269 ~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~L 318 (1109)
T PRK10929 269 ELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNAL 318 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 33334444555667787887788888888888888999999888776543
No 212
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.79 E-value=4.7e+02 Score=36.47 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000217 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALAL 426 (1849)
Q Consensus 347 AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l 426 (1849)
+..+.+-|+.+++.+. +...|.+++...+.+++++..-.+.--..+......++.+-..|...........++...
T Consensus 384 ~~~e~eqLr~elaql~----a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 384 NREEQEQLRNELAQLL----ASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446777766663 444555666677788888866555444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000217 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELG 506 (1849)
Q Consensus 427 ~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~ 506 (1849)
...........|...+...+.+..|+..-.+.....+..++.....|-.+...|+..+.++.+.-+....++.+..++.+
T Consensus 460 s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD 539 (980)
T KOG0980|consen 460 SIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKD 539 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 44444555555555555555555555554555555555555554445455555555555554444444444444444444
Q ss_pred H
Q 000217 507 R 507 (1849)
Q Consensus 507 ~ 507 (1849)
+
T Consensus 540 ~ 540 (980)
T KOG0980|consen 540 R 540 (980)
T ss_pred H
Confidence 3
No 213
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=68.39 E-value=2.9e+02 Score=33.81 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHH
Q 000217 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1849)
Q Consensus 402 ~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~ 481 (1849)
++-.+|++|..++.+|+.++.-=+.+++.+.+++..--..+-.-..+.--|.+|...+..-..++|.....|.-+++.=-
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence 34566677777777777777777777777777777666666666666666667766666655555554444433333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 482 ~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
..+.-+...++..-..++....|+.+++..++.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444455555544444
No 214
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.26 E-value=2.4e+02 Score=32.51 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 000217 338 VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLL 387 (1849)
Q Consensus 338 k~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~ 387 (1849)
++++.-+-+++..+..++..++.........--+|.++-..|..++.+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888888888888877777776667777777777776643
No 215
>PRK10698 phage shock protein PspA; Provisional
Probab=66.68 E-value=2.7e+02 Score=32.82 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHH
Q 000217 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASK 346 (1849)
Q Consensus 267 ~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~ 346 (1849)
-..++.++..++..+.....+| ...++.=.+.|+ ..+|.+.+.|.+++..|+..+...+..+..+...+..
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA---~~Al~~G~EdLA------r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~ 124 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKA---ELALRKEKEDLA------RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGE 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444343333 333333344454 3455677788888999988888877777777665555
Q ss_pred HHHHHHHHHHH
Q 000217 347 AEIEAQTLKLD 357 (1849)
Q Consensus 347 AE~Ev~~LKqe 357 (1849)
.+.++..++..
T Consensus 125 L~~ki~eak~k 135 (222)
T PRK10698 125 LENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 216
>PF15294 Leu_zip: Leucine zipper
Probab=65.98 E-value=3.2e+02 Score=33.51 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKE 629 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lke 629 (1849)
.|..||.||.+||+....++.....+.++|..|+..|..+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999966655
No 217
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.94 E-value=1.9e+02 Score=38.60 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHhh
Q 000217 311 ANIRQYQQCLDKLSNMEKNISR 332 (1849)
Q Consensus 311 a~llQykqClEkis~LE~~~s~ 332 (1849)
|++.+|..-..++-+.|.+++.
T Consensus 349 AA~kAY~~yk~kl~~vEr~~~~ 370 (652)
T COG2433 349 AAYKAYLAYKPKLEKVERKLPE 370 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 6666777777788777777765
No 218
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.83 E-value=3.8e+02 Score=36.49 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKL 606 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~kl 606 (1849)
.+..|+.+....+.+...+
T Consensus 377 e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666666665543
No 219
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=65.39 E-value=3.1e+02 Score=33.12 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 585 SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVE 643 (1849)
Q Consensus 585 S~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~e 643 (1849)
...++.++-..+..--|.+..||+| ++||+.|-..++++|++-.+|-...+.-..
T Consensus 131 ti~sleDfeqrLnqAIErnAfLESE----LdEke~llesvqRLkdEardlrqelavr~k 185 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQAIERNAFLESE----LDEKEVLLESVQRLKDEARDLRQELAVRTK 185 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557778888888888888888885 569999999999999999888876654443
No 220
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.02 E-value=3.4e+02 Score=33.51 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhHHHH
Q 000217 348 EIEAQTLKLDLARIEA 363 (1849)
Q Consensus 348 E~Ev~~LKqel~~l~e 363 (1849)
..+...++..+.++..
T Consensus 80 ~~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 80 EADAAELESQVLRLEA 95 (423)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444455555555443
No 221
>PF14992 TMCO5: TMCO5 family
Probab=63.01 E-value=2.3e+02 Score=34.75 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 414 LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 414 i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
.-.|-+.+.++...++..+.+|..|+.++...-.-+.|-
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~ 51 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS 51 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch
Confidence 335677888888888888888888888888876655553
No 222
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.86 E-value=5e+02 Score=34.66 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=80.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 000217 304 RLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALE 383 (1849)
Q Consensus 304 ~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE 383 (1849)
++.+-+|..+ ..-+-.+.+|..++.+|.+.-+.|+.|..+++. ..+++ + +++ ..+.
T Consensus 445 ~M~E~~Dt~~---~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R--~q~R~----------~---~~~------~~d~ 500 (852)
T KOG4787|consen 445 QMNELKDTVF---KSDVQKVISLATKLEQANKQCRILNERLNKLHR--KQVRD----------G---EIQ------YSDE 500 (852)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH--HHHhh----------h---hhc------cchH
Confidence 3344455543 678888999999999999999999999999887 22222 1 122 2344
Q ss_pred HhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000217 384 DKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKL 463 (1849)
Q Consensus 384 ~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kL 463 (1849)
++|..++.+++-.+...-++-.+++.+...+.++....+-+....-+. .++..-=..+-.+|..=.|+..+.+.+....
T Consensus 501 ~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t-~~l~Kq~L~~~~~q~de~r~s~~~Q~~~~~~ 579 (852)
T KOG4787|consen 501 LKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQT-GRLCKQFLKIDHAQKDERRRSLSKQSGAAII 579 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhH-HHHHHHHHHhcccCcchHHHHHHhccchhhh
Confidence 455555555555555555566666666666666666666654433322 0111111122235556566666666555544
Q ss_pred hh
Q 000217 464 KG 465 (1849)
Q Consensus 464 k~ 465 (1849)
-+
T Consensus 580 ~~ 581 (852)
T KOG4787|consen 580 AE 581 (852)
T ss_pred hh
Confidence 33
No 223
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.58 E-value=3.1e+02 Score=32.20 Aligned_cols=154 Identities=27% Similarity=0.270 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHH---H
Q 000217 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTL---H 481 (1849)
Q Consensus 405 ~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L---~ 481 (1849)
.++=.|+..+...+...++...+...+...+.+-..++-..+.++.|...|++-+..++..++.....|-.....+ .
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~ 110 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLK 110 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccch
Confidence 3444555555555556666666666666666666777777777888888887777777777665544443333332 0
Q ss_pred HHHHHHH----HHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHH----
Q 000217 482 SELESMV----QKMGSQ--SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRA---- 551 (1849)
Q Consensus 482 ~E~e~L~----qk~~~~--~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~---- 551 (1849)
.+...+. -++... ...+.....++++|+..+..++.+.-+--..|.. |...=..|..+-+
T Consensus 111 ~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~----------ER~~W~eEKekVi~YQk 180 (202)
T PF06818_consen 111 RQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ----------ERRTWQEEKEKVIRYQK 180 (202)
T ss_pred hhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 0000000 011110 1224455677888888888877766665555544 3444444443222
Q ss_pred --H-HHHHHhhhhHHHHHHH
Q 000217 552 --Q-ILKDMGTRNQSLQEEV 568 (1849)
Q Consensus 552 --~-~L~~lE~~~~~L~~ev 568 (1849)
+ .--.|=.++++|+.+|
T Consensus 181 QLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 181 QLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 1 2345556677776665
No 224
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.34 E-value=5.5e+02 Score=35.00 Aligned_cols=252 Identities=18% Similarity=0.203 Sum_probs=131.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH-HHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhh-------------
Q 000217 351 AQTLKLDLARIEAEKEAAVVKYE-ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK------------- 416 (1849)
Q Consensus 351 v~~LKqel~~l~eEKEa~~lqyq-QcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~k------------- 416 (1849)
....=++++....|.+..+++.. .|++....+.. .|.+--.+|-..+..++.++..|...+..
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve---~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~ 99 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYKRKVE---EASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEG 99 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCc
Confidence 33444556666777777777755 57766653333 33333445555566667777766666442
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HhhHHHHHHHHHHHHHhhhh
Q 000217 417 -LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE-RSNQTLHSELESMVQKMGSQ 494 (1849)
Q Consensus 417 -L~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE-~~~q~L~~E~e~L~qk~~~~ 494 (1849)
|.+...++.-.+.++...-..-=.++...+.++.+|..+|-....-....--+...|- ..+..++..+..|.......
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444455555666555444111111111111121 33455566666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh--hhccCHHHHHHHHHHHHH-------HHHHHHHHhhhhHHH
Q 000217 495 SQELTEKQKELGRLWTCIQEERLRF-VEAETAFQTLQH--LHSQSQDELRSLAAELQN-------RAQILKDMGTRNQSL 564 (1849)
Q Consensus 495 ~qEL~ek~~Ei~~L~~siqeE~~k~-~EaE~aL~~Le~--LhSqSQeE~~~L~~Ei~~-------~~~~L~~lE~~~~~L 564 (1849)
.+++.....+|-.|+..+--.-... ...+-.|..... .|+.|++=+..|..-++. +.+.+.+|-.....|
T Consensus 180 lekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 180 LEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777766655443322 355666666533 477777777666655544 444455554444444
Q ss_pred HHHHHHHHHHhhccc--------ccccchHHHHHHHHHHHHHHHHHHHH
Q 000217 565 QEEVEKVKEENKGLN--------ELNLSSAESIKNLQDEILSLRETIGK 605 (1849)
Q Consensus 565 ~~ev~~~kEEn~~Ln--------e~n~SS~~sIk~LQdEi~~LKE~~~k 605 (1849)
=+-+.--.|+...+. .-|.-|...|+-...|...|-+++..
T Consensus 260 Wn~l~ts~Ee~~~f~~~t~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s 308 (660)
T KOG4302|consen 260 WNLLDTSDEERQRFVHVTESEATEPNSLSLDIIEQVEKEVDRLEQLKAS 308 (660)
T ss_pred HHhccCCHHHHHHHccccHHHhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443332 33444567888888888877766654
No 225
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.19 E-value=4.5e+02 Score=33.93 Aligned_cols=179 Identities=18% Similarity=0.184 Sum_probs=107.6
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHh
Q 000217 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC--------SRMI 379 (1849)
Q Consensus 308 ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQc--------Le~I 379 (1849)
+.+..+.+|++|-+++-.+..++.....++..--+-+...+..++.|-+.+..+.--...++.+|+.- ....
T Consensus 139 q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l 218 (446)
T KOG4438|consen 139 QLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL 218 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 34455566788888888888888887777777777777778888888888887777777777777641 1333
Q ss_pred HHHHHhhhhhHHhHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 380 SALEDKLLHSEEDSKRINKVA----DKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE 455 (1849)
Q Consensus 380 S~LE~kI~~aee~~~~ln~~~----e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~E 455 (1849)
..|---|+.++++...|...+ +++...+++.+-.|.+..+-...+..++.-+.++|..++.-....+.=++.+.++
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~ 298 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSD 298 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 444445556666655454432 3455555566665666555566666666666666666665555555544444444
Q ss_pred H---HhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 456 L---DNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 456 i---e~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
. +........+. ....|+..+...+++...+
T Consensus 299 ~~e~d~~Et~~v~lk-e~~~Le~q~e~~~~e~~~l 332 (446)
T KOG4438|consen 299 GVEYDSLETKVVELK-EILELEDQIELNQLELEKL 332 (446)
T ss_pred hhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3 33333333333 2234555555555555554
No 226
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=61.66 E-value=2.2e+02 Score=38.50 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000217 430 QCLEAISILEHKLARAEEE 448 (1849)
Q Consensus 430 q~~~kI~~LE~elS~sQeE 448 (1849)
....+|.++|.-+..+|-+
T Consensus 67 d~E~ritt~e~rflnaqre 85 (916)
T KOG0249|consen 67 DMEERITTLEKRFLNAQRE 85 (916)
T ss_pred ccccccchHHHHHHhccCC
Confidence 4456677777777766655
No 227
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=61.60 E-value=6.8e+02 Score=35.81 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 000217 238 EILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARED 280 (1849)
Q Consensus 238 EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~ 280 (1849)
++..+...+..++++.....-.++ .+.+++.+..++..++.+
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~ 265 (1047)
T PRK10246 224 SLQVLTDEEKQLLTAQQQQQQSLN-WLTRLDELQQEASRRQQA 265 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433332 345555555555554444
No 228
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=61.44 E-value=2.5e+02 Score=30.67 Aligned_cols=95 Identities=29% Similarity=0.360 Sum_probs=57.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 408 ~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
+.|...+.++..+++.+...+..+..++..++.++..++.....+...+......++..-..+.-+....+.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~-------- 126 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ-------- 126 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 345555666666677777777777777777777777777777777777666666666654443333222221
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 488 VQKMGSQSQELTEKQKELGRLWTCI 512 (1849)
Q Consensus 488 ~qk~~~~~qEL~ek~~Ei~~L~~si 512 (1849)
.-.....++.-+-.|+++|+.-+
T Consensus 127 --~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 127 --RKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233455666677777777544
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.33 E-value=1.1e+02 Score=35.22 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=37.7
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~ 432 (1849)
..|.+|+.+|..++.....+....+....++..++..+..++++...+..+|+...
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666666556655566667777777777777777777777776554
No 230
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.27 E-value=6e+02 Score=35.03 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1849)
Q Consensus 417 L~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~L 473 (1849)
++.....+..++++-..+|..+++++...++.+.+|+..++....+.+.+.+++..+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666667777777777777766666666665543
No 231
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.10 E-value=44 Score=39.17 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=41.3
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhc
Q 000217 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1849)
Q Consensus 753 l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1849)
+.+..++-+.|+.....++++++.++.+++.. ..+.+...++...+......+..+|..|.++|..
T Consensus 139 lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~--------------~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 139 LKKQLENSSKLEEENDKLKADLEKLETELEKK--------------QKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHhhhcccchhhhHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 33333343345555566666665555555544 3444555566666666666666667777766666
Q ss_pred hhHHHH
Q 000217 833 LEEEKE 838 (1849)
Q Consensus 833 lq~Eke 838 (1849)
+|..++
T Consensus 205 Lq~~i~ 210 (216)
T KOG1962|consen 205 LQEQIE 210 (216)
T ss_pred HHHHHh
Confidence 666553
No 232
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.85 E-value=4.6e+02 Score=33.62 Aligned_cols=86 Identities=26% Similarity=0.315 Sum_probs=54.9
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHH-HHHhhhHhH
Q 000217 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN-LLAEKSTLV 736 (1849)
Q Consensus 658 ~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~-L~~EKs~L~ 736 (1849)
--.+|-.+...|++-......=+..|-.+|+.- .+.-+.++.||+-+.++++.+... +=.=+|.. ++.-.-.|.
T Consensus 435 v~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~---ve~c~~~~aS~~slk~e~erl~qq--~eqi~~~~~~Katvp~l~ 509 (542)
T KOG0993|consen 435 VQEDLVKEIQSLQEQLEKERQSEQELEWQLDDD---VEQCSNCDASFASLKVEPERLHQQ--CEQIFCMNCLKATVPSLP 509 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHhHHHhhccccc
Confidence 345666677788888877777777777777741 234556789999999999988622 00111211 455555567
Q ss_pred hhHHHHHhhhHH
Q 000217 737 AEKNSLFSQLQD 748 (1849)
Q Consensus 737 sEk~~LvSQLq~ 748 (1849)
+|+-+=|-.|+.
T Consensus 510 ~e~~akv~rlq~ 521 (542)
T KOG0993|consen 510 NERPAKVCRLQH 521 (542)
T ss_pred ccchHHHHHHHH
Confidence 776666665554
No 233
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.64 E-value=2.8e+02 Score=31.08 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 485 e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
+.|.-.+..+...++++..|+.+|+.....
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455566667777777765555
No 234
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.36 E-value=2.9e+02 Score=31.04 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646 (1849)
Q Consensus 590 k~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~ 646 (1849)
..|+-||..|.+.++.-..|+..-..--...-+-+.|.++.+..+...+..+..++.
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~ 101 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELK 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777776555544444433222223334566777777777766666666554
No 235
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.24 E-value=83 Score=31.14 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHhh
Q 000217 372 YEECSRMISALEDKL 386 (1849)
Q Consensus 372 yqQcLe~IS~LE~kI 386 (1849)
|++.+++|.-|..+|
T Consensus 13 i~~aveti~~Lq~e~ 27 (72)
T PF06005_consen 13 IQQAVETIALLQMEN 27 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 236
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=59.93 E-value=1.4e+02 Score=34.12 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=65.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhHH----H-----HHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 000217 287 QASIAEAEVQTLKEALARLETEREANIR----Q-----YQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357 (1849)
Q Consensus 287 ra~~ae~E~~sLk~~la~L~~ekea~ll----Q-----ykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqe 357 (1849)
+|.+-..+++.++..+..+..+..-++. | +.+|...|-.|+.+|+..+.+...-+.+. ...++++|+.+
T Consensus 69 ~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~--~n~~i~slk~E 146 (181)
T PF04645_consen 69 QAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKD--LNEEIESLKSE 146 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhhHHHHHHH
Confidence 4556666777777777766666665554 3 45889999999999999988886655442 23457788888
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHhH
Q 000217 358 LARIEAEKEAAVVK-YEECSRMIS 380 (1849)
Q Consensus 358 l~~l~eEKEa~~lq-yqQcLe~IS 380 (1849)
|..+--|++.--+. |-+|.-+++
T Consensus 147 L~d~iKe~e~~emeLyyecMkkL~ 170 (181)
T PF04645_consen 147 LNDLIKEREIREMELYYECMKKLA 170 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877766665555 889986654
No 237
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.47 E-value=2.4e+02 Score=30.67 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=73.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 710 ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL 789 (1849)
Q Consensus 710 ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~ 789 (1849)
||..|-..-..+.+++..+.. ...+..++..++.+.. .|-+.|-.++..|.....++......++.++..+.
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~-------~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENE-------ELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHH-------HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544433 3334445555554444 34566666777777777777777777777777777
Q ss_pred HhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH
Q 000217 790 LLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ 848 (1849)
Q Consensus 790 ~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~ 848 (1849)
.+......+ ..+-+.-.-+..++......+.+-..+-++..+...+.+.++.+-.+.+
T Consensus 80 ~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R 137 (150)
T PF07200_consen 80 EKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKR 137 (150)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 776655555 4444444555566666666777777777777777777777766655444
No 238
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.43 E-value=3.6e+02 Score=31.92 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 409 ~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
...+.+..+..++..+..+|.++...+..|+....+.+..+..+..++..+...+.+++..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666666555544
No 239
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.23 E-value=4.1e+02 Score=32.46 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=13.4
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqe 357 (1849)
|+.+++....+|.++..+...+.+.-.++..++.+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~ 74 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKE 74 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 240
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.18 E-value=1.8e+02 Score=34.61 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDN 458 (1849)
Q Consensus 404 e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~ 458 (1849)
+.=+.++.++...|..++.+....+.+.-+-|.+||..+.++..+-++....|..
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777888888888888888888888888887777765555533
No 241
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.72 E-value=91 Score=38.32 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 000217 776 GLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRY 830 (1849)
Q Consensus 776 ~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~ 830 (1849)
.++..+.++|+.+.--=--++-|-+||.+|..||+.+...|..++..|..+...|
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666666655556666677888888888888888888888777776666
No 242
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.64 E-value=27 Score=33.95 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=53.2
Q ss_pred HhhhhHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHHHHHHHHhhh
Q 000217 1370 RNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENHT 1437 (1849)
Q Consensus 1370 ~eekv~El~~~ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d~v~sLE~~t 1437 (1849)
++.||-.|+.-|+.|. .++..|+.++.++..|.+.|......--.=|-++=..+.+||.+|
T Consensus 5 Le~kle~Li~~~~~L~-------~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 5 LAAQVEHLLEYLERLK-------SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 5789999999999887 678899999999999999999999888888888888888888765
No 243
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.57 E-value=4.1e+02 Score=32.26 Aligned_cols=19 Identities=26% Similarity=-0.008 Sum_probs=9.2
Q ss_pred CCChhhhhhhhHHHHHHHH
Q 000217 225 VPSESERMGKAEMEILTLK 243 (1849)
Q Consensus 225 ~~s~seR~~kAe~EI~~Lk 243 (1849)
..|+-.-..-|..||+..|
T Consensus 68 ~~seq~~~~~a~~elq~~k 86 (330)
T KOG2991|consen 68 RLSEQDFKVMARDELQLRK 86 (330)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3443333445666666553
No 244
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=58.19 E-value=2.5e+02 Score=38.25 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=67.0
Q ss_pred HhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhH
Q 000217 730 AEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQL 809 (1849)
Q Consensus 730 ~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl 809 (1849)
.++-.+.++...+.-+|+.+...... +...+..+..+...+...+. ....+......+..........+
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~-------~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i 243 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISE-------LESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKI 243 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHH
Confidence 34444666666666666666544332 22222224444444444433 11122222233334444444448
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHH
Q 000217 810 DIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQ 856 (1849)
Q Consensus 810 ~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~q 856 (1849)
..++..+..++..+..+.+.+..+..+.+.++..+..+...|...+.
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 290 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEE 290 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877777555544433
No 245
>PF14992 TMCO5: TMCO5 family
Probab=57.81 E-value=2.7e+02 Score=34.17 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhh
Q 000217 460 FAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQS 495 (1849)
Q Consensus 460 ~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~ 495 (1849)
..++..+...|..+|.++..+.++.+...+.-...-
T Consensus 115 k~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~ 150 (280)
T PF14992_consen 115 KNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQA 150 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666655555544443333
No 246
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.78 E-value=5.6e+02 Score=33.55 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccC
Q 000217 939 IHKLENENCEQQEEMRSLVDQIKVLRVQLYQ-LLEILEIDADH 980 (1849)
Q Consensus 939 IseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~q-vl~~L~i~~~~ 980 (1849)
|..++.-+..-..+++.+..-+---|-.||+ |+.++++..+-
T Consensus 553 ~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~f 595 (622)
T COG5185 553 ILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKF 595 (622)
T ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455666666666666777774 66666655443
No 247
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=57.60 E-value=6.7e+02 Score=34.43 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=117.2
Q ss_pred hhccchhhhccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHH-------HHHHHHHHHHHHHHhhhccchh
Q 000217 214 QHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSL-------ERLSNLESEVSHAREDSKGLSE 286 (1849)
Q Consensus 214 l~~e~~~~~~~~~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~sl-------ek~~~LE~eis~aQ~~~~~L~e 286 (1849)
+.-+.-..+.+......|--.++.......+....-+.++......-..+- .|+-.+|.-.--+|-+...-.+
T Consensus 12 ~~~e~~~~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d 91 (916)
T KOG0249|consen 12 QQHEQAQSKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHD 91 (916)
T ss_pred HHHHHhhcccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCccc
Confidence 334444455566666666666666666665554444443332222221111 3444455555555544433333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000217 287 QASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKE 366 (1849)
Q Consensus 287 ra~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKE 366 (1849)
+..+-+.++- .+++.+ -|-.|+..+|...++.+++....--. +..+..=-..|-+.+..+..
T Consensus 92 ~ndklE~~La-----------nkda~l---rq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~--- 153 (916)
T KOG0249|consen 92 LNDKLENELA-----------NKDADL---RQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTK--- 153 (916)
T ss_pred chHHHHHHHh-----------Ccchhh---chhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHH---
Confidence 3333333322 233332 34566667777777776666543322 22221111112222222211
Q ss_pred HHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 367 AAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAE 446 (1849)
Q Consensus 367 a~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQ 446 (1849)
+ -+..-..+..+.+++.+..++|.++.++....+. =.+.+..+.... -+.+..--.+..++-
T Consensus 154 -a-------ee~~~~~eer~~kl~~~~qe~naeL~rarqreem-------neeh~~rlsdtv---dErlqlhlkermaAl 215 (916)
T KOG0249|consen 154 -A-------EEHSGNIEERTRKLEEQLEELNAELQRARQREKM-------NEEHNKRLSDTV---DERLQLHLKERMAAL 215 (916)
T ss_pred -H-------HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhcccccccc---HHHHHHHHHHHHHHH
Confidence 0 0222334455555566666666665555443321 112233222222 244444445566677
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 447 EEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 447 eEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
++.+||-.+++...+.+.++......|-..+..|..+.+.|
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888888888777766555656666666666655
No 248
>PRK10869 recombination and repair protein; Provisional
Probab=57.57 E-value=6e+02 Score=33.83 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHH
Q 000217 448 EAQRLHSELDNGFAKLKGAEEKCL 471 (1849)
Q Consensus 448 Ev~RL~~Eie~~~~kLk~lE~~~~ 471 (1849)
++.+....++.--.+|..++++..
T Consensus 283 ~l~~~~~~~~~dp~~l~~ie~Rl~ 306 (553)
T PRK10869 283 ELRHYLDRLDLDPNRLAELEQRLS 306 (553)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHH
Confidence 333333333333444555555433
No 249
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=57.55 E-value=3.7e+02 Score=31.46 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql 645 (1849)
.+..|+.++..|+++... |.....+|..+.+++......|.....++
T Consensus 62 ~~~~l~~eLq~l~~~~~~-----------k~~qe~eI~~Le~e~~~~~~e~~~~l~~~ 108 (206)
T PF14988_consen 62 EQAKLQQELQALKEFRRL-----------KEQQEREIQTLEEELEKMRAEHAEKLQEA 108 (206)
T ss_pred HHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666544 44455567677777777776666655544
No 250
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=56.09 E-value=20 Score=44.00 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000217 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal 424 (1849)
+|+.|+..|..+...+......+..+...+..++..|..+......+
T Consensus 57 ~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 57 TISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 34444444443333333333333344444444444444333333333
No 251
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.89 E-value=4.2e+02 Score=33.53 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 422 eal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
..=...++|+..-...++..+......+.+|..+|..-..++..-|..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~ 263 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKY 263 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556666666667777777777777777777776654
No 252
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.52 E-value=1.1e+02 Score=31.10 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhhhhhHHH
Q 000217 1089 VLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFV 1148 (1849)
Q Consensus 1089 ~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~en~~~l~ 1148 (1849)
..-..|..|++++.+|++.+.++.+++..+......|..+...|+.+.++..+....+|+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444467777777788888888888888888777888888888888888777777666554
No 253
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.10 E-value=2.2e+02 Score=30.38 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 000217 714 VRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776 (1849)
Q Consensus 714 LR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~ 776 (1849)
+..++..|+.+....+.....|+.+|+.|=+.++.+...-.....+...|+.+++++-+.++.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666788888888888888877777777888888888888777776
No 254
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.33 E-value=6.2e+02 Score=33.03 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=108.2
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhH----HHHHHHHHHHHHHHHHHHHHHhHHH------
Q 000217 246 LAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASI----AEAEVQTLKEALARLETEREANIRQ------ 315 (1849)
Q Consensus 246 i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~----ae~E~~sLk~~la~L~~ekea~llQ------ 315 (1849)
...+++|..+-.+.|..--.+-+.++.+.++.+ ..-.+-+|+.. .+.=+.-|+.-++.++.....---|
T Consensus 243 neel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 243 NEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367778877777778777777777777777666 33444444442 2334444554444443222211111
Q ss_pred -----------HHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000217 316 -----------YQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1849)
Q Consensus 316 -----------ykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~ 384 (1849)
...|.+.=+.==..|-..+.++....+++.+-+.....|++++.++- +++...-| ..
T Consensus 322 pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp--~dv~rk~y----------tq 389 (521)
T KOG1937|consen 322 PLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP--DDVQRKVY----------TQ 389 (521)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC--chhHHHHH----------HH
Confidence 11222221111134444455566666666666666666666666552 12222222 33
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-----------------LALQYQQCLEAISILEHKLARAEE 447 (1849)
Q Consensus 385 kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekea-----------------l~l~~qq~~~kI~~LE~elS~sQe 447 (1849)
.|.....|++++.+.|-++-.+..+|++++..+.+-.+. ..-+.-..+..|-.--.++.+.=.
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~ 469 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIR 469 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777777778888865544433222 111122445555555666666656
Q ss_pred HHHHHHHHHHhhhhhhh
Q 000217 448 EAQRLHSELDNGFAKLK 464 (1849)
Q Consensus 448 Ev~RL~~Eie~~~~kLk 464 (1849)
+-+++..++-.+..++-
T Consensus 470 ~tg~~~revrdlE~qI~ 486 (521)
T KOG1937|consen 470 ETGALKREVRDLESQIY 486 (521)
T ss_pred HcchHHHHHHHHHHHHh
Confidence 66666666555444443
No 255
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.09 E-value=1.2e+02 Score=32.22 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHH
Q 000217 797 CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1849)
Q Consensus 797 ~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1849)
-|..++..|.+.+..++.....+.....+|.-++.++....
T Consensus 34 eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 34 ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555444443
No 256
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.58 E-value=1.5e+02 Score=29.46 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 000217 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMG 492 (1849)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~ 492 (1849)
.++.+..++++.+++|..|+.++....++...|. .....|..+|..|+.+-..+...+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~--------------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK--------------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444433 3333444455555555544433333
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.95 E-value=4.5e+02 Score=31.00 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l 361 (1849)
+-..++.+.+...++.-+.+.+...+.++..|+..++..
T Consensus 68 LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 68 LEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334455555555566667677777777777777777765
No 258
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.51 E-value=6.6e+02 Score=32.81 Aligned_cols=189 Identities=21% Similarity=0.228 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHH
Q 000217 1027 LVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQG 1106 (1849)
Q Consensus 1027 L~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~ 1106 (1849)
|.+...+|+.+..+++.+-.. ...++-.-..+..+-.+...=.+++++|+.+++.-..-.. ....-...-++-+
T Consensus 323 ll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~-----rk~ytqrikEi~g 396 (521)
T KOG1937|consen 323 LLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ-----RKVYTQRIKEIDG 396 (521)
T ss_pred HHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH-----HHHHHHHHHHHHh
Confidence 677778888777777666554 2333333332332222223333677788888775544222 1122223344555
Q ss_pred HHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhhhhhHHHHhhhcccchhhhhhhh-----HHHHHHHHHHHHhHh--
Q 000217 1107 AQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVI-----SEKLVKIADLSENLD-- 1179 (1849)
Q Consensus 1107 s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~en~~~l~E~i~~snLs~~~~~~~-----~Ek~~~l~~L~e~l~-- 1179 (1849)
-.+....+|.+|+++-..|-+......+..+ ...++.-|-+ |++.. +.-..-|-++|..+.
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L~----Rsfavtdell--------f~sakhddhvR~aykllt~iH~nc~ei 464 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEALN----RSFAVTDELL--------FMSAKHDDHVRLAYKLLTRIHLNCMEI 464 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHH--------HHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999887777666542 2222222222 32211 211122333333332
Q ss_pred -hhhccchhHHHHHHHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHH
Q 000217 1180 -KLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIA 1235 (1849)
Q Consensus 1180 -~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~ 1235 (1849)
.--..++.+.++|..+...+...+.-+ ++ ..|+++..++..++-.+++|-.+|.
T Consensus 465 ~E~i~~tg~~~revrdlE~qI~~E~~k~-~l-~slEkl~~Dyqairqen~~L~~~iR 519 (521)
T KOG1937|consen 465 LEMIRETGALKREVRDLESQIYVEEQKQ-YL-KSLEKLHQDYQAIRQENDQLFSEIR 519 (521)
T ss_pred HHHHHHcchHHHHHHHHHHHHhHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223456677777777777776644433 22 2578888888888888888887764
No 259
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.85 E-value=6.6e+02 Score=32.61 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHH
Q 000217 268 SNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARL 305 (1849)
Q Consensus 268 ~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L 305 (1849)
-+|+..+...+.+|..|.+--..|..---.+|++-.+|
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqL 255 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQL 255 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHH
Confidence 45666666666666666543333333333444444433
No 260
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.83 E-value=74 Score=37.42 Aligned_cols=82 Identities=30% Similarity=0.375 Sum_probs=56.8
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000217 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1849)
Q Consensus 703 SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k 782 (1849)
+++|+.-.++.+|+|... +..+|..|..|-.-|=+.++.+.++++.|...|+.||..+-.+-.+...|+.+..
T Consensus 129 ~~~d~ke~~ee~kekl~E-------~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEE-------LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 555776666666666544 4456666666666677777777788888888888888777777777777777777
Q ss_pred HHHHHHHHh
Q 000217 783 SLEDSCLLL 791 (1849)
Q Consensus 783 ~lEes~~~l 791 (1849)
+|+.-+.+.
T Consensus 202 ELe~~~El~ 210 (290)
T COG4026 202 ELEPGVELP 210 (290)
T ss_pred Hhcccccch
Confidence 776654443
No 261
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.39 E-value=4.9e+02 Score=30.99 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHH
Q 000217 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEV 274 (1849)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~ei 274 (1849)
..+++.+...++.+++.+-+.+=...-+|+++..+...++..-
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777778888877777766555555555555555555443
No 262
>PRK11281 hypothetical protein; Provisional
Probab=51.38 E-value=1e+03 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1849)
Q Consensus 403 ~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~R 451 (1849)
+..+..-+++++..-..-.+-...+.+-...++..+|..+...|+.++.
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555555555555544
No 263
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.19 E-value=5.3e+02 Score=32.65 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=47.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHH
Q 000217 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMV 488 (1849)
Q Consensus 409 ~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~ 488 (1849)
.+-++..........+...|.+....+..+..+|....+++.+.+.+|+......-+. .........+..|+.|...+.
T Consensus 270 ~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 270 PLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555666667777777777777777777777777777777666555542 111223333444555555544
Q ss_pred HHhh
Q 000217 489 QKMG 492 (1849)
Q Consensus 489 qk~~ 492 (1849)
-+++
T Consensus 349 vrIG 352 (359)
T PF10498_consen 349 VRIG 352 (359)
T ss_pred hhhh
Confidence 3333
No 264
>PLN03188 kinesin-12 family protein; Provisional
Probab=50.81 E-value=1.1e+03 Score=34.71 Aligned_cols=161 Identities=23% Similarity=0.250 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHHHhhhhhhhhhhhHHH
Q 000217 1069 LTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFV 1148 (1849)
Q Consensus 1069 Lle~n~qL~~~~~~~~~~ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~e~~~~lE~en~~~l~ 1148 (1849)
-+-+.++||-++...--+.++++.|+..-.+=-.+|.+++|.+=.=-.-|++.+-.|.-++.+|-+....
T Consensus 1063 wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~---------- 1132 (1320)
T PLN03188 1063 WISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRR---------- 1132 (1320)
T ss_pred heechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445689999999999999999999999888888999999988777777777766666666555544421
Q ss_pred HhhhcccchhhhhhhhHHHHHH------------HHHHHHhHhhhhccchhHHHHHHHhhhhhHHHHHhhHHHHHHHHHh
Q 000217 1149 ETISQSNLSHIFKDVISEKLVK------------IADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKS 1216 (1849)
Q Consensus 1149 E~i~~snLs~~~~~~~~Ek~~~------------l~~L~e~l~~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~~le~l 1216 (1849)
|-+++-.=|... +.+|.-.++.|... .|.|-.+|+
T Consensus 1133 ----------i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~e-----------------reker~~~~------ 1179 (1320)
T PLN03188 1133 ----------IQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVE-----------------REKERRYLR------ 1179 (1320)
T ss_pred ----------HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH------
Confidence 222222111111 34444433333221 122222222
Q ss_pred HHHHHHhhhhhhhhhHHH----HhhhhhhhhhhHH--HHHHHHHHHhhhHhhHHHHHHHhhhhhhh
Q 000217 1217 ENELVAIGCVRDQLNCEI----ANGKDLLSRKEKE--LFVAEQILCSLQNERTELHMKVEDLTCKY 1276 (1849)
Q Consensus 1217 ~~~l~e~~si~~~L~~qi----~~~~~~l~qk~~e--lleae~~~~~~~~~~~El~~~ve~Lk~~~ 1276 (1849)
.+.+++..+|-.-- ..|.-.++-|+.+ +-.|+++.-.++.++..+.+.|+.||.++
T Consensus 1180 ----~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1180 ----DENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred ----HhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333221 1244444555555 66677777788888888888888888887
No 265
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.62 E-value=4.8e+02 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=24.0
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000217 332 RAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1849)
Q Consensus 332 ~aqeeak~lnera~~AE~Ev~~LKqel~~l~eE 364 (1849)
.....+..+...+..|-.++..++.++..+...
T Consensus 35 ~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~ 67 (240)
T PF12795_consen 35 KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ 67 (240)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 344466777778888888888888888877543
No 266
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.52 E-value=1.7e+02 Score=34.13 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=39.8
Q ss_pred CChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHH
Q 000217 226 PSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALA 303 (1849)
Q Consensus 226 ~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la 303 (1849)
.|.-.|..+.+.++..|+..+..+..+-.......++.+ ...+..+++...+...|.+....+.+++..|...+.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV---AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888887765433333332222 223444444444444444444444444444444443
No 267
>PRK10698 phage shock protein PspA; Provisional
Probab=50.46 E-value=4.9e+02 Score=30.71 Aligned_cols=45 Identities=18% Similarity=0.342 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 000217 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQ 412 (1849)
Q Consensus 368 ~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~ 412 (1849)
++.+.+.|.+.|..|+..+...+..+..|...+..++.++...+.
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777666666666665555555555554444
No 268
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.29 E-value=1.1e+02 Score=36.20 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1849)
Q Consensus 400 ~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~L 473 (1849)
.+.+..+++++.++-..|-.+++.+...|....++|..|+-+.|+..+..++|-.+...+..++.+++.....+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 34445555555555556677777778888888888888999999999998888888888888888877654433
No 269
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.20 E-value=8.7e+02 Score=33.55 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhhhhhHH
Q 000217 448 EAQRLHSELDNGFAKLKGAE 467 (1849)
Q Consensus 448 Ev~RL~~Eie~~~~kLk~lE 467 (1849)
-++.|..+.+....+|..+.
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 270
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=49.35 E-value=22 Score=43.66 Aligned_cols=124 Identities=25% Similarity=0.266 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHH
Q 000217 693 LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANA 772 (1849)
Q Consensus 693 LlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ 772 (1849)
+.|+-+-||.+...++.-+-++-.++.+|+..|+.+......+.++=..| .-..+-|..++.++..
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL--------------sstV~~lq~Sl~~lss 98 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSL--------------SSTVTSLQSSLSSLSS 98 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhh
Confidence 44444445555555555555555555555554444444444444333333 3333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 000217 773 EVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRY 830 (1849)
Q Consensus 773 ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~ 830 (1849)
.+-++-..+-.-..+.-.+...-+.+.....+|.+-|..+...+.+|+.+...+|...
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 4444444444444444445445555566666666667777777777777776666543
No 271
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.93 E-value=2e+02 Score=33.58 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000217 399 VADKAESEVERLKQALG 415 (1849)
Q Consensus 399 ~~e~~e~ev~~Lk~~i~ 415 (1849)
++..++.++++|+.++.
T Consensus 94 rlp~le~el~~l~~~l~ 110 (206)
T PRK10884 94 RVPDLENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 272
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=48.68 E-value=1.6e+02 Score=36.47 Aligned_cols=80 Identities=25% Similarity=0.396 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000217 349 IEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQY 428 (1849)
Q Consensus 349 ~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~ 428 (1849)
..|.+|-.+|+++.+||+...- +++.+-+..+.++..|.++-.-+-.+.++++.+|
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~------------------------~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qy 63 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEE------------------------RLKAEQESFEKKIRQLEEQNELIIKEREDLQQQY 63 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4578899999999999997632 2333333344444445554456677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 429 QQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 429 qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
-+|-+=++--+.=+|.+|+-+.--
T Consensus 64 recqell~lyq~ylseqq~kl~~s 87 (328)
T PF15369_consen 64 RECQELLSLYQKYLSEQQEKLTMS 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999988888888888875543
No 273
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=48.55 E-value=1.7e+02 Score=37.83 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~k 416 (1849)
.-|++||+.|..=|.++++...+++.|+.|++.|+.=+..
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~a 389 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALA 389 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999986543
No 274
>PF13166 AAA_13: AAA domain
Probab=47.91 E-value=8.5e+02 Score=32.79 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 425 ALQYQQCLEAISILEHKLARAEEEAQRLHSELDNG 459 (1849)
Q Consensus 425 ~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~ 459 (1849)
..........|..++..+.....=+.+++.++...
T Consensus 437 ~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 437 KEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33333444445555555554555555555555444
No 275
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=47.09 E-value=9.7e+02 Score=33.22 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 000217 236 EMEILTLKNALAKLEAEK 253 (1849)
Q Consensus 236 e~EI~~Lkk~i~~LqtEK 253 (1849)
..||..|...+..+..+-
T Consensus 125 ~~ei~~Le~k~~~~~~~i 142 (762)
T PLN03229 125 SDQIISLESKYQQALKDL 142 (762)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666555555443
No 276
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.97 E-value=1.2e+02 Score=29.39 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 445 AEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 445 sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
.++++++.+...-....+|+++|.++..|+.++..|+.+++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666777777777777777777777777766666654
No 277
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.79 E-value=1.1e+02 Score=30.17 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=43.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhh
Q 000217 708 NVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNS 766 (1849)
Q Consensus 708 n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~s 766 (1849)
-++...||.....+..-......+...|..||+..+++|........+|-.++..|...
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666777888889999999999998888877776666665544
No 278
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.49 E-value=1.7e+02 Score=34.51 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=63.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 000217 707 LNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLED 786 (1849)
Q Consensus 707 ~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEe 786 (1849)
+...++.+..-.+..-..-......+..+..|+..|..++..+...++.|...|..|+..+.+.+.+++++..++..++.
T Consensus 19 ~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 19 AAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777777777777777888888888888888888888888888888888888888777777777777776655
Q ss_pred HHHHh
Q 000217 787 SCLLL 791 (1849)
Q Consensus 787 s~~~l 791 (1849)
.-+.+
T Consensus 99 ~~~~l 103 (251)
T PF11932_consen 99 TRQEL 103 (251)
T ss_pred HHHHH
Confidence 54444
No 279
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=44.94 E-value=5.5e+02 Score=29.75 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHHHhhhHHhHHHHHHHH
Q 000217 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRA 344 (1849)
Q Consensus 314 lQykqClEkis~LE~~~s~aqeeak~lnera 344 (1849)
.+++.-.++|-.||-.-++|+..++.+...+
T Consensus 4 sALK~LQeKIrrLELER~qAe~nl~~LS~et 34 (178)
T PF14073_consen 4 SALKNLQEKIRRLELERSQAEDNLKQLSRET 34 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3556667888888888888888888776553
No 280
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=44.30 E-value=4.8e+02 Score=28.88 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhh
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENS 667 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~ 667 (1849)
-|.+|=+.|..|...+++...|++-...-.+||+.++ +.||..-..+.+ .+.+=|+.+.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~EL-------DsL~~EkvhLee--------------ilnkKqe~l~ 65 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQREL-------DSLNGEKVHLEE--------------ILNKKQETLR 65 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHH--------------HHHHHHHHHH
Confidence 4677777888888888898888886666677777766 445443333333 2234455555
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHH--HHHHHhhhHhHhhHHHHHh
Q 000217 668 KLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVC--QNLLAEKSTLVAEKNSLFS 744 (1849)
Q Consensus 668 ~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc--~~L~~EKs~L~sEk~~LvS 744 (1849)
.|+--|....+|----...++... .--++...|+.+-++-|+|=+|. +.|.-+++++-+=|+-|++
T Consensus 66 iLqlhcqeke~eaqrq~~~~~eck-----------~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQLL~ 133 (134)
T PF15233_consen 66 ILQLHCQEKESEAQRQQTLLQECK-----------LRLDFEEQLEDLMGQHKDLWEFHMPERLAREICALESSKEQLLK 133 (134)
T ss_pred HHHHHHHHHHHHhhhhhhhhHhHH-----------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHhc
Confidence 555555554444333333333222 22355667888889999988876 4588888888776766654
No 281
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.28 E-value=9.3e+02 Score=32.21 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred HHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHH
Q 000217 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEA----EKEAAVVKYEECSRMISALEDKLLHSEEDSKR 395 (1849)
Q Consensus 320 lEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~e----EKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ 395 (1849)
+..|+.++.+++...+.+-.+-+|.++|-..-+.|.+-+.++-. ++-. -.+.+++-+ .++..
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~---------l~~AErdFk-----~Elq~ 666 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV---------LSDAERDFK-----KELQL 666 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc---------chhHHHHHH-----HHHHH
Confidence 34455555555555666666777777777777777777666631 1110 111222111 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
++.+..-+-+.++.++....|-+.++.......+.- .-.--+-.+++.|+-+..|..+|+.-.++.+..+..
T Consensus 667 ~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~--~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~ 738 (741)
T KOG4460|consen 667 IPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKP--TYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNH 738 (741)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555555555554333433332222210 011115667778888888888888888888877654
No 282
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=44.14 E-value=3.6e+02 Score=31.03 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1849)
Q Consensus 455 Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~aL~~ 528 (1849)
+|+....+|.+-..+|..|..-|.-|..+++.....+..+..++.....++..+...+...-..+...+.+|..
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666677777777777777777777777777777777777777766666655555555555544
No 283
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.98 E-value=4.3e+02 Score=30.67 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 435 I~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
+-.+-.......++.+++...+.........+|.....||..+..|+.+...+..+....+.++...+..+..++..+.+
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666655555555556666666666666666666666666666666666666666666666655
Q ss_pred HHHHH
Q 000217 515 ERLRF 519 (1849)
Q Consensus 515 E~~k~ 519 (1849)
-..+|
T Consensus 178 ~e~~F 182 (190)
T PF05266_consen 178 AELEF 182 (190)
T ss_pred HHHHH
Confidence 43333
No 284
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.97 E-value=7.8e+02 Score=31.18 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=19.5
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 328 KNISRAEADAVELSDRASKAEIEAQTLKLDLA 359 (1849)
Q Consensus 328 ~~~s~aqeeak~lnera~~AE~Ev~~LKqel~ 359 (1849)
.......+.+..+..++..++..+..|+++-.
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444455555666666677777777776543
No 285
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=43.86 E-value=3.1e+02 Score=28.38 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHH
Q 000217 374 ECSRMISALEDKLLHSEEDSKRINKVADKAESEVE 408 (1849)
Q Consensus 374 QcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~ 408 (1849)
.-+..|+.++..|..++..+..|.+-..++|..++
T Consensus 63 ~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 63 PYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888888888888888888877777776654
No 286
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=43.00 E-value=73 Score=42.38 Aligned_cols=193 Identities=19% Similarity=0.245 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhHHHHHHHhHhh----hhchHHHHhhhHHhhhhHHHHh
Q 000217 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASF----VQLSETRLAGMESQISFLQEEG 883 (1849)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL~~e~qeh~~~----~~~sE~~ls~LE~~i~~LqEe~ 883 (1849)
........+..|...+..|.+.+......++....++..|+.-|.+-.++...| ..++..-|..++.++..|++-.
T Consensus 201 ~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK 280 (619)
T PF03999_consen 201 SFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELK 280 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777777777777777888888889998888776666644 5667888888888888887766
Q ss_pred hhhhhhhHHHHHHHHhhHHHHH-HHHHHHHHHHhh-hhh-hHHHHHHHHHhhhhHHHHHHHHHhhhhhhHH---HHHHHH
Q 000217 884 LCRKKAYEEELDKALDAQIEIF-ITQKYIQDLKEK-NFS-LLFECQKLLQESSLSEKLIHKLENENCEQQE---EMRSLV 957 (1849)
Q Consensus 884 ~~~~~~~eeE~dk~~~aqiei~-ilqk~i~Dle~k-N~~-ll~EcQk~~eas~~s~~lIseLe~E~~~~q~---e~~~Ll 957 (1849)
+...+.| +..+..||- ++.+|.---++. .|. .+.+ ...+.++...|.|...+.. ..+-++
T Consensus 281 ~~~lk~~------I~~~R~ei~elWd~~~~s~eer~~F~~~~~d--------~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il 346 (619)
T PF03999_consen 281 KQNLKEF------IEKKRQEIEELWDKCHYSEEERQAFTPFYID--------SYTEELLELHEEEIERLKEEYESRKPIL 346 (619)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHhHHHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444 333444444 444443211111 111 1111 2346677777777654433 344566
Q ss_pred HHHHHHHHHHHH--HHHHHHhccc-----CCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhh
Q 000217 958 DQIKVLRVQLYQ--LLEILEIDAD-----HGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016 (1849)
Q Consensus 958 ~~i~~Lr~gi~q--vl~~L~i~~~-----~~~~d~~~~e~~~~~~l~~i~~~~~~l~~s~~~~q~e 1016 (1849)
+.+.+...-+.. -|+.-.-|+. +|+ ...++.+-+.+..++=.-...|...+..-+++
T Consensus 347 ~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~--LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 347 ELVEKWESLWEEMEELEESSKDPSRLNNRGGH--LLKEEKERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CCGG--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhcccccH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666665554443 2222222222 232 23444434444444444444455544444443
No 287
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=42.84 E-value=6.3e+02 Score=29.78 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1849)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~ 453 (1849)
+..+..-+..++..+..++.....--+-...+.+-+..++..++..+...|+-+++..
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666666677777777777777777777777776654
No 288
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.61 E-value=4.6e+02 Score=33.70 Aligned_cols=48 Identities=35% Similarity=0.473 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 502 QKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT 559 (1849)
Q Consensus 502 ~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~ 559 (1849)
+.++.-+..++|+|.-|..--|..++.+..+| | .||.++++.|.+||.
T Consensus 243 ~~e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q-------~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 243 QREYQFILEALQEERYRYERLEEQLNDLTELH---Q-------NEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHhHHH
Confidence 44567777888888888888888888887777 3 355555566666654
No 289
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.43 E-value=4.5e+02 Score=32.54 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=89.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Q 000217 767 LFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI--TERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKV 844 (1849)
Q Consensus 767 lsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~--~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~v 844 (1849)
..-++.+++.++.++...|..+..+++.|..+. ..-.....++..++.++..++.+++++...+.+-.=.....-.++
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i 251 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARI 251 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Confidence 344556667777777777777777777776655 334457778888888888888888888877766566666677777
Q ss_pred HHHHHhHHHHHHHhHhhhhchHHHHhhhHHhhhhHHHHhhhhhhhhHHHHHHHHhhHHHH
Q 000217 845 EELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEI 904 (1849)
Q Consensus 845 eel~~sL~~e~qeh~~~~~~sE~~ls~LE~~i~~LqEe~~~~~~~~eeE~dk~~~aqiei 904 (1849)
..+..++..+..+..... ...++...-+...|+-+...-...|+--+.+...+.++.
T Consensus 252 ~~l~~~i~~e~~~i~~~~---~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 252 KSLRKQIDEQRNQLSGGL---GDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred HHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765544322 123444444555666666666666666666666555543
No 290
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.31 E-value=2.4e+02 Score=31.37 Aligned_cols=95 Identities=25% Similarity=0.243 Sum_probs=47.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 710 ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL 789 (1849)
Q Consensus 710 ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~ 789 (1849)
++..+-..+..|.+-+..|..+.+.|.+|-..|.+.+-. .++...++.+..+++.++..+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-------------------~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN-------------------EELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555554421 1223333334444444444444
Q ss_pred Hhhhhhhhh-HHHHHHHHHhHHHHHHHHHHHHHHH
Q 000217 790 LLDNEKSCL-ITERVNLVSQLDIARKGLKDLEKSY 823 (1849)
Q Consensus 790 ~l~~e~s~l-~~Ek~~L~sQl~~~~~~l~~lek~~ 823 (1849)
.+....... ..++..+..........++.+++-|
T Consensus 134 ~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 134 KLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444322221 2566666666666666666655543
No 291
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.14 E-value=6.5e+02 Score=29.74 Aligned_cols=6 Identities=0% Similarity=0.252 Sum_probs=2.3
Q ss_pred HHHHHH
Q 000217 619 ALQQEI 624 (1849)
Q Consensus 619 aLqqel 624 (1849)
....-+
T Consensus 256 ~f~~~v 261 (302)
T PF10186_consen 256 RFEYAV 261 (302)
T ss_pred HHHHHH
Confidence 333333
No 292
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.71 E-value=35 Score=38.53 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH 638 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~ 638 (1849)
|+.++..-+..--|.+.-||.|+ +||+.|..++.++|+|+.+|..+.
T Consensus 1 SLeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667777888877 799999999999999998888766
No 293
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=41.09 E-value=1.9e+02 Score=29.77 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000217 592 LQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1849)
Q Consensus 592 LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~ 650 (1849)
|+.|+-.+......+..-+..-+.+--++++.+.++--++.+-..+|.+.+..+.++..
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~ 59 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDN 59 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666666666666666565566667788888888888999999999999887765533
No 294
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=41.06 E-value=8.8e+02 Score=31.43 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=67.5
Q ss_pred hccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 000217 281 SKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLAR 360 (1849)
Q Consensus 281 ~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~ 360 (1849)
.+.+++|...+.+++.-+..+.+.+-++...-...|..-.-++...|..+...|+|...++++-..++...+.+......
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~ 87 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLI 87 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888889988988888888888888888888889999999999999999999998777777777777665544
Q ss_pred H
Q 000217 361 I 361 (1849)
Q Consensus 361 l 361 (1849)
.
T Consensus 88 ~ 88 (459)
T KOG0288|consen 88 A 88 (459)
T ss_pred H
Confidence 4
No 295
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.76 E-value=40 Score=31.82 Aligned_cols=39 Identities=36% Similarity=0.405 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHHH
Q 000217 1391 NDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDS 1429 (1849)
Q Consensus 1391 ~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d~ 1429 (1849)
+..++++|..+|..|+.+|..|+..+..+-.-+.+|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556899999999999999999998887777777666654
No 296
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.16 E-value=7.1e+02 Score=34.10 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 000217 237 MEILTLKNALA 247 (1849)
Q Consensus 237 ~EI~~Lkk~i~ 247 (1849)
.-++.|++.+.
T Consensus 209 ~~~~~l~~~l~ 219 (726)
T PRK09841 209 EAINALQETFT 219 (726)
T ss_pred HHHHHHHhcCe
Confidence 44455555544
No 297
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.58 E-value=1.5e+03 Score=33.30 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=55.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-----------------hhhhHHHHHHHHHhhhhhhHH
Q 000217 889 AYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQ-----------------ESSLSEKLIHKLENENCEQQE 951 (1849)
Q Consensus 889 ~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~e-----------------as~~s~~lIseLe~E~~~~q~ 951 (1849)
++.+-+++|+..|-= ++ .--.||+++-..|+.-+-+..+ .++|+..|-++|=.--.+-+-
T Consensus 1097 el~~a~q~am~ghar--~~-e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~erek 1173 (1320)
T PLN03188 1097 ELKEAMQMAMEGHAR--ML-EQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREK 1173 (1320)
T ss_pred HHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544432 23 3457999999999988777663 356777777777776777888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000217 952 EMRSLVDQIKVLRVQLYQ 969 (1849)
Q Consensus 952 e~~~Ll~~i~~Lr~gi~q 969 (1849)
|+.+|-++|+.|+..+.-
T Consensus 1174 er~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHhhHHHHHHHhh
Confidence 999999999998887654
No 298
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.02 E-value=9.1e+02 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=36.9
Q ss_pred HhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHK 441 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~e 441 (1849)
.+...-.+..++++-++.+.++-..++..++++.+++...+++...+.-.+.+...-...|=.+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e 184 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDE 184 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555666777777777666666666655555554444444333
No 299
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.82 E-value=9.9e+02 Score=30.93 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=37.6
Q ss_pred HHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000217 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1849)
Q Consensus 323 is~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~e 363 (1849)
.-+|+++...+.++++.+++-+.-.++++..||..+++.+.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~ 176 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQ 176 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHH
Confidence 45789999999999999999999999999999999988864
No 300
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.75 E-value=1.4e+03 Score=32.73 Aligned_cols=550 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred Hhhhccc-----------hhHhhHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHH
Q 000217 278 REDSKGL-----------SEQASIAE------AEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVEL 340 (1849)
Q Consensus 278 Q~~~~~L-----------~era~~ae------~E~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~l 340 (1849)
|..|++| .++|..++ .++..|.....+|+.. ..+|.++|..|+..+-....+|..+
T Consensus 149 QDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~-------~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 149 QDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDK-------LTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000217 341 SDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEE 420 (1849)
Q Consensus 341 nera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Ee 420 (1849)
.+| .+-..++..|.+..-.+.=++-.- .|++-..--..+-..+..+.+...-++...+.++++..++...+..++.+
T Consensus 222 rer-~~~~~~Ie~l~~k~~~v~y~~~~~--ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 222 RER-ERKKSKIELLEKKKKWVEYKKHDR--EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred HHH-HHHHHHHHHHHHhccccchHhhhH--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHH------HHHH-HHHHHHhhh
Q 000217 421 KEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTL------HSEL-ESMVQKMGS 493 (1849)
Q Consensus 421 keal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L------~~E~-e~L~qk~~~ 493 (1849)
........++..+++...+.++-........+...-+.....+..+-.....++..++.. +.+. +-..+.+..
T Consensus 299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~ 378 (1072)
T KOG0979|consen 299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQK 378 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHhhhccCHHHHHHHHHHHHHHHHH------------
Q 000217 494 QSQELTEKQKELGRLWTCIQEE-----RLRFVEAETAFQT---LQHLHSQSQDELRSLAAELQNRAQI------------ 553 (1849)
Q Consensus 494 ~~qEL~ek~~Ei~~L~~siqeE-----~~k~~EaE~aL~~---Le~LhSqSQeE~~~L~~Ei~~~~~~------------ 553 (1849)
....+....++++.-+.-.+.+ +.+-..-...+.. +..+..-+.+=-++-.+=-+++-+.
T Consensus 379 ~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~~k~~~~l~~~~~d~~dAy~wlrenr~~FK~~vyeP~~m~l 458 (1072)
T KOG0979|consen 379 KSSKLRDSRQEIDAEQLKSQKLRDLENKKRKLKQNSDLNRQKRYRVLRQGSSDAYDAYQWLRENRSEFKDEVYEPPIMTL 458 (1072)
T ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhccCchHHHHHHHHHHHCHHHhcccccCCceEEE
Q ss_pred --------------------------------------------------------------------------------
Q 000217 554 -------------------------------------------------------------------------------- 553 (1849)
Q Consensus 554 -------------------------------------------------------------------------------- 553 (1849)
T Consensus 459 ~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~ 538 (1072)
T KOG0979|consen 459 NVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSN 538 (1072)
T ss_pred ecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhh
Q ss_pred ------------------------------------------------------------------------------HH
Q 000217 554 ------------------------------------------------------------------------------LK 555 (1849)
Q Consensus 554 ------------------------------------------------------------------------------L~ 555 (1849)
..
T Consensus 539 f~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~ 618 (1072)
T KOG0979|consen 539 FIEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSR 618 (1072)
T ss_pred hhcCcHHHHHHHHHhccccccccCcccccHHHHHHHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhh
Q ss_pred HHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000217 556 DMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635 (1849)
Q Consensus 556 ~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln 635 (1849)
++=.....+++..... ...|..|..++..+......++..+..+..+....+-.++.++.+...+|
T Consensus 619 ~f~~~~~~l~~~~~~~--------------ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~ 684 (1072)
T KOG0979|consen 619 NFFSVSPVLEELDNRI--------------EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLN 684 (1072)
T ss_pred hhhccchHHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhhhh
Q 000217 636 KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSL----SDLNVEL 711 (1849)
Q Consensus 636 ~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SL----Sd~n~EL 711 (1849)
...+........+-.....+-..=.++-..-..+=..++.....+...+-++-...+.......++.+- +-+++|+
T Consensus 685 ~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~~~~~~~~~~~~~~~~~~k~~e~~i~~~~~~~~~~~s~~~~iea 764 (1072)
T KOG0979|consen 685 SELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILDTEDMRIQSIRWHLELTDKHKEIGIKEKNESSYMARSNKNNIEA 764 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHH-HHHHHHhhhhhhhhhhhhhhh--hHHHHHHHHHHHHHHHHHH
Q 000217 712 EGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQD-VNENLKKLSDENNFLVNSLFD--ANAEVEGLRAKSKSLEDSC 788 (1849)
Q Consensus 712 egLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~-~~~~l~~L~Ekns~LE~slsd--~~~ElE~lr~K~k~lEes~ 788 (1849)
+--+.++...-.+.+.-.....+-..-+..-+++..- -.-...+-..-.-.......- +-.++..+=.-+.++....
T Consensus 765 ~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~e~p~t~~eld~~I 844 (1072)
T KOG0979|consen 765 ERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELAEEPTTMDELDQAI 844 (1072)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHHhCCCcHHHHHHHH
Q ss_pred HHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhH
Q 000217 789 LLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1849)
Q Consensus 789 ~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Eke~~~~~veel~~sL 851 (1849)
...+....++..=-.+.+.|++..+..+.-|+......-.-....+.++......+......+
T Consensus 845 ~~e~t~~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~ 907 (1072)
T KOG0979|consen 845 TDELTRALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEM 907 (1072)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
No 301
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=38.72 E-value=73 Score=41.55 Aligned_cols=66 Identities=35% Similarity=0.368 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 000217 720 ALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLE 785 (1849)
Q Consensus 720 ~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lE 785 (1849)
+|.=-.+.|-+....|..|+..|--.|+.+.+--.+|++++..||..|-.++++.+..|.+.++-|
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e 384 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDE 384 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333444556666777888999999999999999999999999999999999999999998855544
No 302
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.64 E-value=7.1e+02 Score=34.13 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=47.2
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhc
Q 000217 755 KLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI--TERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1849)
Q Consensus 755 ~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l~--~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1849)
.+..|+..-...+.-++.++..++.++...|..+..++.++..+- .+-..+.+++..++.++..+..+..++..+|..
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~ 336 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK 336 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555556666666777777777777777777777664322 445556666666666666666555555544433
No 303
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.35 E-value=2.8e+02 Score=32.82 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 438 LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
++.+.....++.+.|..|++....+|+.++.+...|.++-..++-|.+.|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 67777777888888888888888888888877666666666555555555
No 304
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.16 E-value=1.1e+03 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHhH
Q 000217 310 EANIRQYQQCLDKLSNMEKNISRAEADA 337 (1849)
Q Consensus 310 ea~llQykqClEkis~LE~~~s~aqeea 337 (1849)
|.-.-|.+|..|+|..||..-.+..-++
T Consensus 305 e~L~qqV~qs~EKIa~LEqEKEHw~LEa 332 (518)
T PF10212_consen 305 EGLAQQVQQSQEKIAKLEQEKEHWMLEA 332 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456677777777777655544333
No 305
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.06 E-value=1.1e+03 Score=31.46 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=88.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000217 552 QILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEEL 631 (1849)
Q Consensus 552 ~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~ 631 (1849)
+++++-+..+.+|.+-|..+.- .|.+ .+.+.++|+.+-+.|+-...++.+++. .|.=-|...++++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~---~l~e----ke~sl~dlkehassLas~glk~ds~Lk-------~leIalEqkkEec 396 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQA---ELTE----KESSLIDLKEHASSLASAGLKRDSKLK-------SLEIALEQKKEEC 396 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhh-------HHHHHHHHHHHHH
Confidence 3444444555555555555432 1222 255899999999999999999888766 2333345678999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 000217 632 NELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK 692 (1849)
Q Consensus 632 ~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mek 692 (1849)
.+++......-+-..+.-.+| .|...++.|.-+-..-+-+|++..+|-+-|++=|...+.
T Consensus 397 ~kme~qLkkAh~~~ddar~~p-e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeven 456 (654)
T KOG4809|consen 397 SKMEAQLKKAHNIEDDARMNP-EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVEN 456 (654)
T ss_pred HHHHHHHHHHHHhhHhhhcCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887765555555555555 467889999999999999999988888888877766554
No 306
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.62 E-value=2e+02 Score=36.07 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred HHHhhHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhHhhhHHHHH------------------HHHhhhhHHHHHHH
Q 000217 1307 IHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQAT------------------ELFSELQISSVCEV 1368 (1849)
Q Consensus 1307 l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~~l~E~e~~------------------~l~~dlq~ssv~~~ 1368 (1849)
|+.+|+.....+...+.++.+.|.+=+.+..-||....|..-.+.||. +||.+.-...--..
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~ 82 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPE 82 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccc
Confidence 788999999999999999999999999998889998888888888887 33332221111001
Q ss_pred HHhhhhHHHHHHHhhhhhhc-ccchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHHHHHHHH
Q 000217 1369 LRNEKAHELSRACENLEDRS-NSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLE 1434 (1849)
Q Consensus 1369 L~eekv~El~~~ce~le~~~-~~~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d~v~sLE 1434 (1849)
+-...-+++|.+.=..|-.. -........|+.+-..+..+|...+..|+.-.|.+.+|.+...-+-
T Consensus 83 ~~~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11223344443322222111 1233577788888899999999999999888888888887766663
No 307
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=37.46 E-value=1.2e+03 Score=31.48 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccc
Q 000217 522 AETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELN 582 (1849)
Q Consensus 522 aE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n 582 (1849)
-+.-+..-..++..+|.+...++.+.+...+...++-+-...|-..-....++...-.++|
T Consensus 454 qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n 514 (607)
T KOG0240|consen 454 QEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN 514 (607)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh
Confidence 3333444445555566666666665554444444443333333333333333333333333
No 308
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.39 E-value=5.6e+02 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000217 337 AVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1849)
Q Consensus 337 ak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~ 384 (1849)
+..+.++......++..|.+.+..++... -.|+.|++.+..|..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~----~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQQLEELQASI----NELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcc
Confidence 33344444444444444444444443322 235566666666653
No 309
>PRK11519 tyrosine kinase; Provisional
Probab=37.22 E-value=7.9e+02 Score=33.65 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhc
Q 000217 757 SDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCL--ITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1849)
Q Consensus 757 ~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~s~l--~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1849)
..|+......+.-++.++..++.++...|..++.++.++..+ ..+-..+..++..++.++..++.+.+++..+|..
T Consensus 259 ~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~ 336 (719)
T PRK11519 259 ERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555666666677777777777777777777766543 3555556666666666666665555555554443
No 310
>PRK11519 tyrosine kinase; Provisional
Probab=36.68 E-value=1.1e+03 Score=32.40 Aligned_cols=12 Identities=33% Similarity=0.221 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 000217 237 MEILTLKNALAK 248 (1849)
Q Consensus 237 ~EI~~Lkk~i~~ 248 (1849)
.-+..|++.+..
T Consensus 209 ~~~~~l~~~l~V 220 (719)
T PRK11519 209 GMINNLQNNLTV 220 (719)
T ss_pred HHHHHHHhcceE
Confidence 345555555444
No 311
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.41 E-value=1.2e+03 Score=31.23 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhh
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENS 667 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~ 667 (1849)
+++..+.+|..++....-+-..++..---=..||..+..+..-+...+ ..-.++++...
T Consensus 348 ~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~---------------------~~q~~~~e~L~ 406 (570)
T COG4477 348 SVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIE---------------------DEQEKVQEHLT 406 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHH
Confidence 778888888888776554333333221112333333322222222222 22233444444
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------HH-------HHhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 000217 668 KLKEVYERDRCEKVALLEKLEIMEKLLEK-------------NA-------VLENSLSDLNVELEGVRDKVKALEEVCQN 727 (1849)
Q Consensus 668 ~Lke~~s~~~~EK~~L~~kLq~mekLlEk-------------ns-------~LE~SLSd~n~ELegLR~K~k~LEesc~~ 727 (1849)
.|+.+=..-+..-..+.++|...-.++++ .. -|.+.||+.-+.|+.+...+..-++-.+.
T Consensus 407 ~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~ 486 (570)
T COG4477 407 SLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNT 486 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 55555444455555566666654433333 12 23345555555555555566655665555
Q ss_pred HHHhhhHhHhhHHHHHhhhHHHHHHHH
Q 000217 728 LLAEKSTLVAEKNSLFSQLQDVNENLK 754 (1849)
Q Consensus 728 L~~EKs~L~sEk~~LvSQLq~~~~~l~ 754 (1849)
|..+-.. +-+.++|+-||=.-+-++.
T Consensus 487 l~~~t~e-~ve~a~LaE~lIQY~NRYR 512 (570)
T COG4477 487 LEDETEE-VVENAVLAEQLIQYGNRYR 512 (570)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5444333 4478888877765555544
No 312
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.20 E-value=6.5e+02 Score=29.12 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=41.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 535 QSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEA 608 (1849)
Q Consensus 535 qSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~ 608 (1849)
+|.+|+..|-.+|......+..+-.+.++..-+|.. ++|.+++..+|.+|.+|++.|...+.
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~------------L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKE------------LSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555555554444555545444 37888999999999999998876444
No 313
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=36.08 E-value=7.8e+02 Score=28.91 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=61.2
Q ss_pred HHHHHHHhHhhhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 000217 1006 MQISVLKALEQNHQVVIENSIL-VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERN 1084 (1849)
Q Consensus 1006 l~~s~~~~q~en~~~~~E~svL-~t~l~ql~~e~~~L~~ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~ 1084 (1849)
|-.-+-.++.++..+.++-+-| -.+.++++.-+ .|+...-...--||.+|++|..+++-|.-.-++|-
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl-----------~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgr 89 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHL-----------NEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGR 89 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhH
Confidence 3334446788888888888776 34555666544 23223333355667777777777777766555443
Q ss_pred hh-----------HHHHHHHHHHHHHHHhHhHHHHHHHHhhhhhhhHhhhHHHHHhhhHH
Q 000217 1085 HT-----------EEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQ 1133 (1849)
Q Consensus 1085 ~~-----------ee~lk~E~~~l~~~ls~L~~s~~~~q~E~~~~l~e~~sL~~~~~~L~ 1133 (1849)
.. -.+|+.|+..-+.+|-+|..-. ..++.+|..|..-+..|-
T Consensus 90 klarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq-------~~L~rEN~eLKElcl~LD 142 (195)
T PF10226_consen 90 KLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQ-------EELIRENLELKELCLYLD 142 (195)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHh
Confidence 21 2455556666666555554433 334444444444444333
No 314
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=35.58 E-value=1e+03 Score=30.14 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh----ccCHHHHHHHHHHHHHHHHHHHHHh
Q 000217 499 TEKQKELGRLWTCIQE---ERLRFVEAETAFQTLQHLH----SQSQDELRSLAAELQNRAQILKDMG 558 (1849)
Q Consensus 499 ~ek~~Ei~~L~~siqe---E~~k~~EaE~aL~~Le~Lh----SqSQeE~~~L~~Ei~~~~~~L~~lE 558 (1849)
...|.-|++|..-++| |...+++-+..-.. ++. ..|++=...|..++++-.....+.+
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e--~~p~~~~~~s~~v~~ql~selkkivf~~enie 261 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQLESDMKE--SMPSTPSPSSQDVPKQLVSELKKIVFKVENIE 261 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--cCCCCCcchhhhhHHHHHHHHHHHHHHHhhHH
Confidence 3446667777777777 44444444442222 221 1345555666666665555544443
No 315
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.58 E-value=2.6e+02 Score=37.35 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhhhhHHHHHhhHHHHHHHHHhHHHHHHhhhhhhhhhHHHHhhhhhhhhhhHHHHHHHHHHHhhhHhhHHH
Q 000217 1186 NELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTEL 1265 (1849)
Q Consensus 1186 ~~L~~~v~~~~~kl~~~e~en~~lk~~le~l~~~l~e~~si~~~L~~qi~~~~~~l~qk~~elleae~~~~~~~~~~~El 1265 (1849)
...+..+..+.++++.++.+|.+|+..++.+..+++...+=++.+...+. .=.+++.++-. +
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~--------------~ 479 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRA--------------R 479 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHH--------------H
Confidence 34455666788888888999999998888888877777776666665543 11233333322 3
Q ss_pred HHHHhhhhhhhhhhHHHHhhhhhhHHH
Q 000217 1266 HMKVEDLTCKYDEAKIIQEDQGKQIRK 1292 (1849)
Q Consensus 1266 ~~~ve~Lk~~~~ea~~i~e~~ekqi~~ 1292 (1849)
.+.|+.|+.++.+.+...+.|++.+..
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 316
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.50 E-value=6.3e+02 Score=32.74 Aligned_cols=62 Identities=31% Similarity=0.304 Sum_probs=54.3
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHH
Q 000217 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1849)
Q Consensus 657 ~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSd~n~ELegLR~K~k~ 720 (1849)
.++.+||....+-+++-.+.+.||-.|-.+|.+...|.+=+.=+|+..+- .|||-||.-++.
T Consensus 259 qsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~k 320 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999988888 599998886653
No 317
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.04 E-value=9.9e+02 Score=29.81 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=8.2
Q ss_pred hhhHHHHHHHhhhhHHHH
Q 000217 656 GLSVKELQDENSKLKEVY 673 (1849)
Q Consensus 656 ~~~vkeLQ~~n~~Lke~~ 673 (1849)
...+..|......|-++|
T Consensus 297 ~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHH
Confidence 344444444444444443
No 318
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=34.94 E-value=8.3e+02 Score=28.94 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000217 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572 (1849)
Q Consensus 501 k~~Ei~~L~~siqeE~~k~~EaE~aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~k 572 (1849)
...+|..|...+..|...+.+-|..+... .-+....+...|. .+...-+..+..|.+++..++
T Consensus 126 l~~~l~~l~~~~~~Er~~R~erE~~i~kr------l~e~~~~l~~~i~---~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 126 LVRELNELQEAFENERNEREEREENILKR------LEEEENRLQEKIE---KEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999888888888776652 1133333332222 233444555566666666554
No 319
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.82 E-value=6.6e+02 Score=29.01 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHhHHHHHhhhhhHHhHHHH
Q 000217 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC-SRMISALEDKLLHSEEDSKRI 396 (1849)
Q Consensus 318 qClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQc-Le~IS~LE~kI~~aee~~~~l 396 (1849)
.+..++..|+..+..+...-....+| ...-.+.+.|+.++..+..|.+ .|..| -+.|..+...+..+-+.+.+-
T Consensus 80 ~~~~~i~~l~~~i~~~~~~r~~~~eR-~~~l~~l~~l~~~~~~l~~el~----~~~~~Dp~~i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 80 ELEKKIEELEEKIEEAKKGREESEER-EELLEELEELKKELKELKKELE----KYSENDPEKIEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554443222222233 2345556666666666665554 24443 366666666666665555555
Q ss_pred HHH
Q 000217 397 NKV 399 (1849)
Q Consensus 397 n~~ 399 (1849)
+.-
T Consensus 155 TDN 157 (188)
T PF03962_consen 155 TDN 157 (188)
T ss_pred Hhh
Confidence 553
No 320
>PF13514 AAA_27: AAA domain
Probab=33.38 E-value=1.7e+03 Score=32.12 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred hhhccchhhhccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccc
Q 000217 213 LQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGL 284 (1849)
Q Consensus 213 ~l~~e~~~~~~~~~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L 284 (1849)
.|..+...+-++. ...-..+.+..+++.+++.|-.... ....|......+..++.++..++.+...+
T Consensus 134 ~L~~ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~----~~~~y~~l~~~~~~~~~~~~~l~~~~~~l 200 (1111)
T PF13514_consen 134 QLDKEADELFKPR-GRKPEINQALKELKELERELREAEV----RAAEYQELQQALEEAEEELEELRAELKEL 200 (1111)
T ss_pred HHHHHHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 2233466666666666666665544 34455555555555555555555555444
No 321
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=33.35 E-value=6.1e+02 Score=27.48 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000217 748 DVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLL 790 (1849)
Q Consensus 748 ~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~ 790 (1849)
.+..+++.+......+|+.+.|...+++..|..+=.+.-.|+.
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~ 115 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQP 115 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677888999999999999999999999999988877766653
No 322
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.33 E-value=2.5e+02 Score=31.32 Aligned_cols=65 Identities=32% Similarity=0.464 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 535 QSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1849)
Q Consensus 535 qSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~ 611 (1849)
.+.+++..+..+|......+..+......|..++..+ .+..+..+|...|..|+.-+..++.-+.
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L------------~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASL------------SSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677776666666666666666666665555554 4444566666666666666655555444
No 323
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.38 E-value=2.8e+02 Score=27.35 Aligned_cols=30 Identities=33% Similarity=0.236 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 000217 444 RAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1849)
Q Consensus 444 ~sQeEv~RL~~Eie~~~~kLk~lE~~~~~L 473 (1849)
..+.+.++|..|=+.....|..+-..+..|
T Consensus 23 ~~~~~~k~L~~ERd~~~~~l~~a~~e~~~L 52 (69)
T PF14197_consen 23 VHEIENKRLRRERDSAERQLGDAYEENNKL 52 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555444444444444343333
No 324
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.34 E-value=1.7e+02 Score=30.21 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=50.6
Q ss_pred hHHHHHhhhhHhhhHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhh
Q 000217 1336 YHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAH 1415 (1849)
Q Consensus 1336 ~~elq~~~~e~~l~E~e~~~l~~dlq~ssv~~~L~eekv~El~~~ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~ 1415 (1849)
..|+.....++...+.....++. |-.++++.-+-+ +...|+.+-...+..|..+.+.+..++.+...++..
T Consensus 29 ~~E~~~v~~EL~~l~~d~~vy~~------VG~vfv~~~~~e---a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 29 LNENKKALEELEKLADDAEVYKL------VGNVLVKQEKEE---ARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHcCCCcchHHHH------hhhHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778877766666665 778888766655 556677777777777777777777777777777766
Q ss_pred hh
Q 000217 1416 LA 1417 (1849)
Q Consensus 1416 l~ 1417 (1849)
|.
T Consensus 100 l~ 101 (105)
T cd00632 100 IQ 101 (105)
T ss_pred HH
Confidence 54
No 325
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=32.11 E-value=53 Score=43.67 Aligned_cols=144 Identities=24% Similarity=0.263 Sum_probs=9.3
Q ss_pred HHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHhHHHHHhhhhhHHh-HHHHHH
Q 000217 321 DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE-CSRMISALEDKLLHSEED-SKRINK 398 (1849)
Q Consensus 321 Ekis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQ-cLe~IS~LE~kI~~aee~-~~~ln~ 398 (1849)
+.|..|...+...+..-....+++...-.++..|=.-|.-..+|-+..+..+.- +...|..++.+|..+++- ...+..
T Consensus 207 ~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~ 286 (619)
T PF03999_consen 207 ENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKE 286 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555555554444444444444444444555544444445555555333332 347777777777666655 455556
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 399 VADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 399 ~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
.|..++.+++++-..+---.++..+...-|...-. |..+..-..|+.||..+.......|.-++..
T Consensus 287 ~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-----E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~ 352 (619)
T PF03999_consen 287 FIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-----EELLELHEEEIERLKEEYESRKPILELVEKW 352 (619)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766655444444443333332222 5555556666777666655555544444433
No 326
>PHA00276 phage lambda Rz-like lysis protein
Probab=31.35 E-value=2.2e+02 Score=31.79 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHHhhhhhHHHHhhhccccccCCCCccccccCCCCCCCCCCCCCCCCCCcCCCCCCcc
Q 000217 81 ALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGTEADPRTPELAPARAIFYPDE 140 (1849)
Q Consensus 81 ~Laeryd~~t~el~~~~~~~a~aFP~qv~~~m~dd~~~~s~~~p~~p~~~~~~~~~~p~~ 140 (1849)
..--.+|++-.-++..++.. |||+.-.-+.+. +++.|. |..|+-++|.+
T Consensus 67 daK~~~DrLiadlRsGn~RL------qvr~~a~s~~~~-s~gg~~----~~gRAeLd~~~ 115 (144)
T PHA00276 67 ALEGSTDRVIADLRSDNKRL------RVRLKPTSGEVQ-SDGRCL----PDGRAELDERD 115 (144)
T ss_pred HHHhhHHHHHHHHHcCCceE------Eeeeeccccccc-CCCCCC----CCcceeeCHHH
Confidence 34456889999999999988 888744433221 122221 34566666654
No 327
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.69 E-value=5.7e+02 Score=25.69 Aligned_cols=59 Identities=27% Similarity=0.409 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 422 eal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
+-+...+++..++|.-|.-++-...+.-+.|..|.......- ..|+++|..|+.+-..+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~r-------eaL~~eneqlk~e~~~W 65 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR-------EALERENEQLKEEQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554444444444443332222 23444555555555554
No 328
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=29.98 E-value=2.1e+02 Score=37.75 Aligned_cols=44 Identities=32% Similarity=0.337 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 471 LLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 471 ~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
..||..-|.|+++.++++.|+-.+.+.+.++|.|+..|+..|.-
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 33455556677777777777777777777777777777766543
No 329
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=29.54 E-value=6.9e+02 Score=31.20 Aligned_cols=158 Identities=24% Similarity=0.312 Sum_probs=77.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000217 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNE 633 (1849)
Q Consensus 554 L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~ 633 (1849)
.+++.+.++.|..+|.--.|||+.|..-|-.-...|..|-.=+-.|-|..-. -=.--|| +.+-...+..
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLa-------gGaaaNa----vrdYqrq~~e 70 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILA-------GGAAANA----VRDYQRQVQE 70 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchHHHH----HHHHHHHHHH
Confidence 4678888999999998888999999887766555555555444444443211 0011122 1122222333
Q ss_pred HHHHHHHHHHHHhhcCCCCcchh-hhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhh
Q 000217 634 LNKKHQAMVEQVESVSLNPENFG-LSVKELQDENSKLKEVYERDRCEKVALLEKLE-IMEKLLEKNAVLENSLSDLNVEL 711 (1849)
Q Consensus 634 Ln~k~~~l~eql~~l~~~~e~~~-~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq-~mekLlEkns~LE~SLSd~n~EL 711 (1849)
||..-..|..+|..+.+...-.. ....+-.|.|-++.=++-=+ .|.-. || +|+.|-.|.++-|.+-..--.==
T Consensus 71 lneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWL-EERR~----lQgEmQ~LrDKLAiaERtAkaEaQLk 145 (351)
T PF07058_consen 71 LNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWL-EERRF----LQGEMQQLRDKLAIAERTAKAEAQLK 145 (351)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433222222211 12234445554444333222 12211 33 36666666666665432211112
Q ss_pred HhHHHHHHHHHHHHHH
Q 000217 712 EGVRDKVKALEEVCQN 727 (1849)
Q Consensus 712 egLR~K~k~LEesc~~ 727 (1849)
|-+.-++|.||+....
T Consensus 146 eK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 146 EKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHhhccC
Confidence 5566677778776544
No 330
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.20 E-value=5.6e+02 Score=31.73 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=45.1
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhh--HHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000217 705 SDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAE--KNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1849)
Q Consensus 705 Sd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sE--k~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k 782 (1849)
.-+..+++.++.++...|.....++.....+--+ -.....++..+...+..+.-+...|...+.+-...+-.++.++.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~ 252 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIK 252 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Confidence 3444555555555555555555555443332211 22344444544555555555555555555555556666666666
Q ss_pred HHHHHHHHh
Q 000217 783 SLEDSCLLL 791 (1849)
Q Consensus 783 ~lEes~~~l 791 (1849)
.++......
T Consensus 253 ~l~~~i~~e 261 (362)
T TIGR01010 253 SLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHH
Confidence 666655544
No 331
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.20 E-value=8.1e+02 Score=26.99 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000217 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1849)
Q Consensus 398 ~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE 474 (1849)
.+++.+-..+..-|. .|..-.+.+-..++++.+......+++...+.++.++..+++..+.....+|.....+|
T Consensus 50 kql~~vs~~l~~tKk---hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 50 KQLEQVSESLSSTKK---HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444 34455666667777777778888888888888888888888888888888776655443
No 332
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.90 E-value=1.5e+03 Score=30.18 Aligned_cols=55 Identities=25% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000217 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1849)
Q Consensus 410 Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk 464 (1849)
|.+-+..|..+...+.-.-..|..+...|=.++.+...-+.+=.+|+-.+..-++
T Consensus 18 l~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~ 72 (531)
T PF15450_consen 18 LEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVK 72 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777888888888888889888888888888866655555555555544444
No 333
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=28.81 E-value=1.4e+03 Score=30.05 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHH
Q 000217 327 EKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRI 396 (1849)
Q Consensus 327 E~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~~aee~~~~l 396 (1849)
++.+..|++++..-.+|+..|...+..+++.-.-+.=++.+. --+..|+.|+.++..++.....+
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~-----~~~~lI~~Le~qLa~~~aeL~~L 305 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETIT-----AIYQLIAGFETQLAEAKAEYAQL 305 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888877755554344333 23578888888877777665444
No 334
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.44 E-value=6.9e+02 Score=30.17 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQA 640 (1849)
Q Consensus 588 sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~ 640 (1849)
.+--....=+.+|..+..||.|+...-.....|+.++..++.+.-+|=+|.--
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667899999999999988889999999998888888777765543
No 335
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.32 E-value=9.3e+02 Score=27.43 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000217 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCL 320 (1849)
Q Consensus 241 ~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~era~~ae~E~~sLk~~la~L~~ekea~llQykqCl 320 (1849)
.++++|..++.=|+-++--++.+-.-|..+..+|.+....+...-+..-..+ ..+.++-
T Consensus 3 Ii~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le---------------------~~er~aR 61 (159)
T PF05384_consen 3 IIKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE---------------------KRERQAR 61 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 5789999999999999999999988888888888765554333222221112 2233444
Q ss_pred HHHHhHHHHH-hhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000217 321 DKLSNMEKNI-SRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAA 368 (1849)
Q Consensus 321 Ekis~LE~~~-s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~ 368 (1849)
-+|...-..+ .-++++.+..++.|.....+...++..-..|..-.|..
T Consensus 62 ~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~L 110 (159)
T PF05384_consen 62 QRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDEL 110 (159)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333 23566777777777777777777777666665544444
No 336
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.06 E-value=46 Score=31.93 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhh
Q 000217 1395 INQLKEKANALECENGGLKAHLAAS 1419 (1849)
Q Consensus 1395 i~~Lker~~~le~En~~lk~~l~~~ 1419 (1849)
|..|-+|++.|..||.+||+++.+-
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778899999999999999999764
No 337
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.69 E-value=3.2e+02 Score=31.03 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHhhhHHhHHHHHHHHHHH
Q 000217 317 QQCLDKLSNMEKNISRAEADAVELSDRASKA 347 (1849)
Q Consensus 317 kqClEkis~LE~~~s~aqeeak~lnera~~A 347 (1849)
-=|..++..+=..+...++.......++..+
T Consensus 114 ~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 114 SLVIRRVHSLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466676666666665555555444443333
No 338
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.44 E-value=1.5e+03 Score=29.58 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHH
Q 000217 365 KEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQC--------LEAIS 436 (1849)
Q Consensus 365 KEa~~lqyqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~--------~~kI~ 436 (1849)
.+..+.+|+||=.++..+..++-..+.++..--+.+..++..+++|.+.+.++.-....+..+|+.. -..+.
T Consensus 140 ~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~ 219 (446)
T KOG4438|consen 140 LESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILN 219 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 3445556778877788888888777777777777788888888888887777776666777776643 34566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000217 437 ILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1849)
Q Consensus 437 ~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE 467 (1849)
.+-..+...++..+.|.+-|-..-.+|+..=
T Consensus 220 al~llv~tLee~~~~LktqIV~sPeKL~~~l 250 (446)
T KOG4438|consen 220 ALKLLVVTLEENANCLKTQIVQSPEKLKEAL 250 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777788888999989888888777877753
No 339
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=26.68 E-value=3.6e+02 Score=31.68 Aligned_cols=78 Identities=26% Similarity=0.324 Sum_probs=56.8
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHHHHhhhhhhHHHhhhhhhhhhhhHHhHHHhhHHH
Q 000217 1235 ANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKL 1314 (1849)
Q Consensus 1235 ~~~~~~l~qk~~elleae~~~~~~~~~~~El~~~ve~Lk~~~~ea~~i~e~~ekqi~~Ls~~~~~q~~Ei~~l~e~N~~L 1314 (1849)
.=||..--|-+.+---+..+++.+...+.+|.+.|-++|.+|+-+++.-++. ++|-+ -..++||.-|.+.|+-|
T Consensus 174 AfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-r~ieE-----kk~~eei~fLk~tN~qL 247 (259)
T KOG4001|consen 174 AFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-REIEE-----KKMKEEIEFLKETNRQL 247 (259)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3344444444445556677889999999999999999999999988766553 33322 23367999999999988
Q ss_pred HHHH
Q 000217 1315 EAEL 1318 (1849)
Q Consensus 1315 e~e~ 1318 (1849)
.+-+
T Consensus 248 KaQL 251 (259)
T KOG4001|consen 248 KAQL 251 (259)
T ss_pred HHHH
Confidence 7654
No 340
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.58 E-value=3.4e+02 Score=35.47 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 535 QSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV 614 (1849)
Q Consensus 535 qSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v 614 (1849)
.+++|++.|-.+=..=..-|..+-.+...+..++..+..+|+ .|..||..|+.....+..-+...+
T Consensus 42 ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~--------------~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 42 LSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENE--------------ALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred CCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 456777776543322222333333334444444444433332 334444445444444333333344
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000217 615 -DQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1849)
Q Consensus 615 -~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~ 647 (1849)
.++..++++...++++...+....+.+..+|..
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777777777777777777777743
No 341
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.50 E-value=2.6e+02 Score=28.95 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=46.8
Q ss_pred cchhhhhhhhHHHHHHHH-----HHHHhHhhhhccchhHHHHHHHhhhhhHHHHHhhHHHHH
Q 000217 1155 NLSHIFKDVISEKLVKIA-----DLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQ 1211 (1849)
Q Consensus 1155 nLs~~~~~~~~Ek~~~l~-----~L~e~l~~L~~~n~~L~~~v~~~~~kl~~~e~en~~lk~ 1211 (1849)
.|...|.+-+..|+..|+ .....++.|...+..|.++|..+..++....+|-..|=.
T Consensus 23 eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 23 ELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999999999886 578888999999999999999888888887777666543
No 342
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.24 E-value=1.8e+02 Score=28.41 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=24.3
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL 417 (1849)
++|..||.+|...+..+..||..+-.-...++.|+..+..|
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888877777776666665444444444444433333
No 343
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.63 E-value=1.5e+03 Score=29.08 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000217 248 KLEAEKEAGLLQYRQSLERLSNLESEVSH 276 (1849)
Q Consensus 248 ~LqtEKE~~~lqY~~slek~~~LE~eis~ 276 (1849)
.++++......++..-..+.+.|+.++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777677777777666654
No 344
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.32 E-value=3.5e+02 Score=28.76 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEH 440 (1849)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~ 440 (1849)
+.+.+..+-.++..||..+..|-+++.++....+.+.++|..++.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566778888888888999999999888888888887766
No 345
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.31 E-value=78 Score=35.88 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=26.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000217 746 LQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1849)
Q Consensus 746 Lq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~~e~ 795 (1849)
|+-++.+|-.--|+|++||..| .|+|.|+..+--|.+-+.+|++|.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888889999999999 778888877777777777776666
No 346
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=25.28 E-value=1.2e+03 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 000217 345 SKAEIEAQTLKLDLARIEA 363 (1849)
Q Consensus 345 ~~AE~Ev~~LKqel~~l~e 363 (1849)
..-+..+..++..+.+++.
T Consensus 30 ~~ee~r~~~i~e~i~~Le~ 48 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQKLEK 48 (247)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3334455555555555543
No 347
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=25.20 E-value=1.3e+03 Score=27.98 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=68.5
Q ss_pred ccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchh---HhhHHHHHHHHHH
Q 000217 223 ARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSE---QASIAEAEVQTLK 299 (1849)
Q Consensus 223 ~~~~s~seR~~kAe~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~e---ra~~ae~E~~sLk 299 (1849)
.+|..++++.+.|-.+|-.|-..|..-.+.-..++. .+..++..+-+.|...-..+.-.=+ .|..+..+++..-
T Consensus 7 prVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~---e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa 83 (239)
T PF05276_consen 7 PRVQEELEKLNQATDEINRLENELDEARATFRRLLS---ESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAA 83 (239)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888887766554442222222 2345666665555543333222211 1222222222111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHH-hH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000217 300 EALARLETEREANIRQYQQCLDKLSNMEKNISRAEA-DA-VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSR 377 (1849)
Q Consensus 300 ~~la~L~~ekea~llQykqClEkis~LE~~~s~aqe-ea-k~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe 377 (1849)
.. -+.+.-.+.-..++++.+|..+..... .. -..-+..+.|-.+|..-..+....+.+.......|.+.-.
T Consensus 84 ~~-------yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~ 156 (239)
T PF05276_consen 84 LQ-------YERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQ 156 (239)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111244455666666666555431 00 0111344444444444444444444444444344444444
Q ss_pred HhHHHHHh
Q 000217 378 MISALEDK 385 (1849)
Q Consensus 378 ~IS~LE~k 385 (1849)
++..|+.+
T Consensus 157 ~v~~Lek~ 164 (239)
T PF05276_consen 157 RVQQLEKK 164 (239)
T ss_pred HHHHHHHH
Confidence 44444444
No 348
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.11 E-value=1.8e+03 Score=29.60 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=43.3
Q ss_pred HhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHH
Q 000217 530 QHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIG 604 (1849)
Q Consensus 530 e~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~ 604 (1849)
+++.++.-+.+--=+.|-.+.++.+.++-..+..---++.+.++++.. |-+-...|..||+||+.-++.|.
T Consensus 269 ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~K~kde~~~----n~~~~~lie~lq~el~~al~~c~ 339 (613)
T KOG0992|consen 269 EKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELEKAKDEIKQ----NDDKVKLIEELQDELSVALKECR 339 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333334555666666666655444444555677766643 33334589999999999888887
No 349
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.08 E-value=1e+03 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHH
Q 000217 693 LLEKNAVLENSLSDLNVELEGVRD 716 (1849)
Q Consensus 693 LlEkns~LE~SLSd~n~ELegLR~ 716 (1849)
+-+=+.-+...++++.++++.+|-
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777776553
No 350
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.95 E-value=1.6e+02 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.387 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000217 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417 (1849)
Q Consensus 378 ~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL 417 (1849)
+|++||++|..+......+..+.+.+...++.+++.|.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 351
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.54 E-value=5e+02 Score=26.72 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=45.7
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 381 ALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTE---EKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 381 ~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~E---ekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
....+|..+...-+.+...++.+..+-..+-+.|+.+.. +.+.+..+...+.+.|..++..+....+++..+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666666666665553 466666666677777777777777666666554
No 352
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=24.16 E-value=1.8e+03 Score=29.25 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-----------------hhhhHHHHHHHHHhhhhhhH
Q 000217 888 KAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQ-----------------ESSLSEKLIHKLENENCEQQ 950 (1849)
Q Consensus 888 ~~~eeE~dk~~~aqiei~ilqk~i~Dle~kN~~ll~EcQk~~e-----------------as~~s~~lIseLe~E~~~~q 950 (1849)
.++.+-+++++.+|-=| + .--.||+++-..|+.-+-+..+ .++|+..|-++|=.-...-+
T Consensus 326 eEL~~al~~A~~GhaR~--l-EqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erE 402 (488)
T PF06548_consen 326 EELDDALQRAMEGHARM--L-EQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAERE 402 (488)
T ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555433 3 3346899999999887766653 35778887777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000217 951 EEMRSLVDQIKVLRVQLYQLLEI 973 (1849)
Q Consensus 951 ~e~~~Ll~~i~~Lr~gi~qvl~~ 973 (1849)
-|..+|-++|+.|+..+.---++
T Consensus 403 kEr~~l~~eNk~L~~QLrDTAEA 425 (488)
T PF06548_consen 403 KERRFLKDENKGLQIQLRDTAEA 425 (488)
T ss_pred HHHHHHHHHhHHHHHHHHhHHHH
Confidence 89999999999999888754443
No 353
>smart00338 BRLZ basic region leucin zipper.
Probab=24.15 E-value=1e+02 Score=29.20 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=25.9
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHH
Q 000217 1391 NDIEINQLKEKANALECENGGLKAHLAASIPAVISLKD 1428 (1849)
Q Consensus 1391 ~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d 1428 (1849)
+..|+..|..++..|+.+|..|..+++..-.-+..|.+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777778887777777776665555555544
No 354
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.88 E-value=3.5e+02 Score=26.37 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000217 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1849)
Q Consensus 428 ~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE 467 (1849)
+--....|..|-..+..+|.++.+|...+..+..+++++.
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445555555555566666666666666666665544
No 355
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.81 E-value=1.4e+03 Score=28.12 Aligned_cols=87 Identities=24% Similarity=0.315 Sum_probs=51.7
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhhhh------------hhh
Q 000217 653 ENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVL---------ENSLSDLN------------VEL 711 (1849)
Q Consensus 653 e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~mekLlEkns~L---------E~SLSd~n------------~EL 711 (1849)
.++...+.+-.++|++|.-+...+.+-|+-|.. +|+-+.+-.+.. +|+.++-+ --+
T Consensus 86 qdLaa~i~etkeeNlkLrTd~eaL~dq~adLhg---D~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~ 162 (389)
T KOG4687|consen 86 QDLAADIEETKEENLKLRTDREALLDQKADLHG---DCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAH 162 (389)
T ss_pred hHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHH
Confidence 344455555566666665544444444444332 233333333332 24444433 227
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHhHhhHHHH
Q 000217 712 EGVRDKVKALEEVCQNLLAEKSTLVAEKNSL 742 (1849)
Q Consensus 712 egLR~K~k~LEesc~~L~~EKs~L~sEk~~L 742 (1849)
+||..|-+.|+--..+.-++|..|+-||+..
T Consensus 163 EgLkak~a~LafDLkamideKEELimERDa~ 193 (389)
T KOG4687|consen 163 EGLKAKCAGLAFDLKAMIDEKEELIMERDAM 193 (389)
T ss_pred HHHHHHhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 8899998888888888888888888888765
No 356
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.75 E-value=1.8e+02 Score=36.55 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 422 eal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
.++..++++++++|+.+|..+......+..+...+.....++.++|.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888888888888888887777777777777777788887775
No 357
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.61 E-value=1.7e+03 Score=28.99 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELD 457 (1849)
Q Consensus 400 ~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie 457 (1849)
+..++.++..-.+....+.+.+..+...+.-+.+++...|.++...|+|...|+.|.-
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566677777777777788888888888888888888877776643
No 358
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=23.58 E-value=4e+02 Score=33.35 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000217 295 VQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE 374 (1849)
Q Consensus 295 ~~sLk~~la~L~~ekea~llQykqClEkis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQ 374 (1849)
|..|..+||++.++++..--+++.-.+ .+|.+|.+ |...-.-.-.|.++..+||.+
T Consensus 10 i~~li~~la~~~~~~e~~~~~~~~~~~---~~e~~~~~---------------------l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 10 IANLIKELARVSEEKEVTEERLKAEQE---SFEKKIRQ---------------------LEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHH---------------------HHHHhHHHHHHHHHHHHHHHH
Confidence 456677777777777766544443222 12223322 222222334566777777888
Q ss_pred HHHHhHHHH
Q 000217 375 CSRMISALE 383 (1849)
Q Consensus 375 cLe~IS~LE 383 (1849)
|-+.++=-.
T Consensus 66 cqell~lyq 74 (328)
T PF15369_consen 66 CQELLSLYQ 74 (328)
T ss_pred HHHHHHHHH
Confidence 877665433
No 359
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.45 E-value=1.3e+03 Score=27.41 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 000217 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQ 621 (1849)
Q Consensus 542 ~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~v~ek~aLq 621 (1849)
+|+-=|...-..-..++..+..|--++++.++.+....+-+-.- +||.-.-.+.+.|.+.+. .+..|.
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~--~~KqrAlrVLkQKK~yE~----------q~d~L~ 83 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQN--ALKQRALRVLKQKKMYEN----------QKDSLD 83 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchh--HHHHHHHHHHHHHHHHHH----------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000217 622 QEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLLEKNAVL 700 (1849)
Q Consensus 622 qel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~-mekLlEkns~L 700 (1849)
+.. -=++|..-..-++.--..+|-.+++.|-.+|....+....+ ++.||+ |+-+++...-+
T Consensus 84 ~Qs---------------fNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~---IedlQDem~Dlmd~a~Ei 145 (218)
T KOG1655|consen 84 QQS---------------FNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDK---IEDLQDEMEDLMDQADEI 145 (218)
T ss_pred Hhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred hhhhh-----------hhhhhhHhHHHHHHHHHHHHHHH
Q 000217 701 ENSLS-----------DLNVELEGVRDKVKALEEVCQNL 728 (1849)
Q Consensus 701 E~SLS-----------d~n~ELegLR~K~k~LEesc~~L 728 (1849)
...|+ ++-+||+.|-.-.-.+++....+
T Consensus 146 QE~Lgr~y~~peide~dL~aELdaL~~E~d~~~~~~~~~ 184 (218)
T KOG1655|consen 146 QEVLGRNYNTPDIDEADLDAELDALGQELDMLEEDENYL 184 (218)
T ss_pred HHHHhhccCCCCcCHHHHHHHHHHHHhHhhccccccccc
No 360
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=23.39 E-value=1.7e+03 Score=28.77 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhccchh-----HhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000217 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSE-----QASIAEAEVQTLKEALARLETEREANIRQ 315 (1849)
Q Consensus 241 ~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~~~L~e-----ra~~ae~E~~sLk~~la~L~~ekea~llQ 315 (1849)
.+--+-+.+|.|.+-.+.|-..+..+..+.+.--. .+|--+.. .+-..+.+...|.+.+. +
T Consensus 191 ~~T~~~~a~Q~E~~R~LaQ~~~~~R~~~e~~~~~~---~ev~a~E~~~r~~~~~l~Edq~~~LsE~~~-----------k 256 (593)
T KOG4807|consen 191 ARTPDRLAKQEELERDLAQRSEERRKWFEATDSRT---PEVPAGEGPRRGLGAPLTEDQQNRLSEEIE-----------K 256 (593)
T ss_pred ccCccHHHHHHHHHHHHHHhhHHHHHHHHhhhccC---CccCcCcCcccccCCCCcHHHHHHHHHHHH-----------H
Confidence 33445567888888888888666665555543221 11211111 13345666666666664 2
Q ss_pred HHHHHHHHHhHHHH
Q 000217 316 YQQCLDKLSNMEKN 329 (1849)
Q Consensus 316 ykqClEkis~LE~~ 329 (1849)
-=+|++++--++++
T Consensus 257 ~~q~Le~~~~~~~~ 270 (593)
T KOG4807|consen 257 KWQELEKLPLRENK 270 (593)
T ss_pred HHHHHHhhhhhhcC
Confidence 34788887666654
No 361
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=23.20 E-value=1.2e+03 Score=30.58 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHH--HHHHhHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 000217 309 REANIRQYQQCL--DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLAR 360 (1849)
Q Consensus 309 kea~llQykqCl--Ekis~LE~~~s~aqeeak~lnera~~AE~Ev~~LKqel~~ 360 (1849)
++.+.++|..-. ..+..||.-+.--|-||+|+..||++|..|++.|+.=...
T Consensus 336 k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~a 389 (446)
T PF07227_consen 336 KEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALA 389 (446)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554333 3488899999999999999999999999999999885433
No 362
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.15 E-value=1.8e+03 Score=28.91 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=20.0
Q ss_pred HHHH-HHHHHHHHHHhHHHHHHHhHHH
Q 000217 237 MEIL-TLKNALAKLEAEKEAGLLQYRQ 262 (1849)
Q Consensus 237 ~EI~-~Lkk~i~~LqtEKE~~~lqY~~ 262 (1849)
+=|. .|=+.|-.|+.||++.-.-|+.
T Consensus 99 EfisntLlkkiqal~keketla~~Ye~ 125 (552)
T KOG2129|consen 99 EFISNTLLKKIQALFKEKETLATVYEV 125 (552)
T ss_pred HHHHHHHHHHHHHhhccccccchhhhh
Confidence 4455 7778888899999988888854
No 363
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.11 E-value=1.6e+03 Score=28.42 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 000217 352 QTLKLDLARIEAEKEAAVVKYEE 374 (1849)
Q Consensus 352 ~~LKqel~~l~eEKEa~~lqyqQ 374 (1849)
..|++.+..++.+.......|..
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~~ 279 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLGP 279 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555555554444444443
No 364
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.85 E-value=1e+03 Score=26.16 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 539 ELRSLAAELQNRAQILKDMGTRN-----QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELR 613 (1849)
Q Consensus 539 E~~~L~~Ei~~~~~~L~~lE~~~-----~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~LQdEi~~LKE~~~klE~Ev~~~ 613 (1849)
++..=..+.+.....+.+++.+. ..|......+..++..|.....+....+..+...+..|+..+.++..|
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E---- 77 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE---- 77 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 000217 614 VDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNP 652 (1849)
Q Consensus 614 v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~ 652 (1849)
.+..++.++-++.-=+..+..+.......|..+|..+
T Consensus 78 --~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 --ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred --HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
No 365
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.80 E-value=1.3e+03 Score=27.09 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 000217 338 VELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLL 387 (1849)
Q Consensus 338 k~lnera~~AE~Ev~~LKqel~~l~eEKEa~~lqyqQcLe~IS~LE~kI~ 387 (1849)
++++.-+-+.+..+...+..++..-..+....-+|.++-..|..++.+..
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666677777777777777666666667777777777766644
No 366
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.31 E-value=9.7e+02 Score=27.71 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=47.4
Q ss_pred HHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhh
Q 000217 696 KNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENN 761 (1849)
Q Consensus 696 kns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns 761 (1849)
....+.+.+..++.+++.++.+...|++.+...+.....- .||..++..++.+...+..|..+..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777888888888888888888888876554333 7888888888877776666555444
No 367
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.28 E-value=4.2e+02 Score=26.57 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHh-hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 908 QKYIQDLKEKNFSLLFECQKLLQE-SSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEIL 974 (1849)
Q Consensus 908 qk~i~Dle~kN~~ll~EcQk~~ea-s~~s~~lIseLe~E~~~~q~e~~~Ll~~i~~Lr~gi~qvl~~L 974 (1849)
...|.+|...||+|=..+-.+-+. .+.+..-+..+-.+|..+.+++..|...+..++..|.+.-+++
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788889999998888666555 4556677778888899999999999999999888887765543
No 368
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.25 E-value=1.8e+02 Score=28.92 Aligned_cols=60 Identities=23% Similarity=0.280 Sum_probs=45.6
Q ss_pred hhhHHHHHHHhhhhhhcccchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHhhHHHHH
Q 000217 1372 EKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIR 1431 (1849)
Q Consensus 1372 ekv~El~~~ce~le~~~~~~~~ei~~Lker~~~le~En~~lk~~l~~~~~~i~sL~d~v~ 1431 (1849)
+.+..|+.+.+.|-..-...+.-|..|+..+...|..+..|+..++....-|.+|.+...
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777777777777777788888888888888888888888877777777776544
No 369
>PRK04406 hypothetical protein; Provisional
Probab=22.21 E-value=4.4e+02 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 000217 432 LEAISILEHKLARAEEEAQRLHSELDNGFAKLKGA 466 (1849)
Q Consensus 432 ~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~l 466 (1849)
...|..|-..+..+|.++.+|...+.....+++++
T Consensus 24 E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 24 EQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555555555555543
No 370
>PRK00295 hypothetical protein; Provisional
Probab=21.85 E-value=3.3e+02 Score=26.67 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal 424 (1849)
++|..||.++...+..+..||..+-+--..++.|..++..|.....++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 371
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.52 E-value=1.1e+03 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000217 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1849)
Q Consensus 483 E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqe 514 (1849)
....+...+......+..-..++.+++..++.
T Consensus 95 ~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 95 KERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555666777666555
No 372
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.35 E-value=1.3e+03 Score=26.70 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 000217 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1849)
Q Consensus 400 ~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~ 469 (1849)
++.+-..+++=++.+..|...|..+..+++++-..-..|...+.....+..++..|+..-......-++.
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~ 131 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEEN 131 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555566677888888899999999999999999999999999999888887766666655543
No 373
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.30 E-value=1.6e+03 Score=27.72 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=50.6
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 000217 702 NSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKS 781 (1849)
Q Consensus 702 ~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~~~~l~~L~Ekns~LE~slsd~~~ElE~lr~K~ 781 (1849)
+-|-.++.+++=||.++..+=+.-+.+. .-.....||+..-..+......|+.+.++....|..+.++..-+...+.++
T Consensus 159 ~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl 237 (269)
T PF05278_consen 159 KDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRL 237 (269)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888999987766554433332 223456677777777777766676666666666665555555555555554
Q ss_pred HHHH
Q 000217 782 KSLE 785 (1849)
Q Consensus 782 k~lE 785 (1849)
-.++
T Consensus 238 ~~l~ 241 (269)
T PF05278_consen 238 GELE 241 (269)
T ss_pred HHHH
Confidence 4443
No 374
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.21 E-value=1.1e+03 Score=29.71 Aligned_cols=77 Identities=27% Similarity=0.371 Sum_probs=44.1
Q ss_pred HHHHHHHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHH----HHHHHHHHHHHHHHH
Q 000217 372 YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALA----LQY----QQCLEAISILEHKLA 443 (1849)
Q Consensus 372 yqQcLe~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~----l~~----qq~~~kI~~LE~elS 443 (1849)
+-.|+..+..|...+.+++....+ ++.++..+..++.++-..|+.+. ..| ..-..||..|...+.
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~ener-------L~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~ 204 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENER-------LESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLA 204 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456777777777776665544333 34444455555555444444422 222 344677888888888
Q ss_pred HHHHHHHHHHHH
Q 000217 444 RAEEEAQRLHSE 455 (1849)
Q Consensus 444 ~sQeEv~RL~~E 455 (1849)
.++........+
T Consensus 205 ~~~~~~~~~~~~ 216 (342)
T PF06632_consen 205 SAKEEEKSPKQE 216 (342)
T ss_dssp HHHHHHHHHH--
T ss_pred Hhhccccchhhh
Confidence 887765554433
No 375
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.18 E-value=3.4e+02 Score=26.92 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALG 415 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~ 415 (1849)
.+|..||.+|...+..+..||.-+-.-...++.|...+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888777777777777654444444444444333
No 376
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.04 E-value=2.1e+03 Score=29.13 Aligned_cols=263 Identities=20% Similarity=0.204 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 000217 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAET--- 524 (1849)
Q Consensus 448 Ev~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k~~EaE~--- 524 (1849)
+.++|+.-|+....-+.+.|.....|...-.+|.+--.++..++..++.-|+++..++..+...+..-|....+|=+
T Consensus 339 e~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe 418 (654)
T KOG4809|consen 339 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPE 418 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChh
Confidence 33334444444444444444444444444555555555555677777888889999999988877765554443321
Q ss_pred ---HHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcccccccchHHHHHHH-HHHHHHHH
Q 000217 525 ---AFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNL-QDEILSLR 600 (1849)
Q Consensus 525 ---aL~~Le~LhSqSQeE~~~L~~Ei~~~~~~L~~lE~~~~~L~~ev~~~kEEn~~Lne~n~SS~~sIk~L-QdEi~~LK 600 (1849)
-++.|+.--+--.+++..-..+....+.++.++++.++|=-.-+..+. .+.-.+|- ++.+| |.++..+|
T Consensus 419 ~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele---r~~kdqnk----kvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 419 FADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE---RHMKDQNK----KVANLKHKQQLEKK 491 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC---chhhhhhh----HHhhHHHHHHHHHH
Confidence 122222222222344444444445556666677666665444443331 11212221 33333 33333333
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhH---
Q 000217 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDR--- 677 (1849)
Q Consensus 601 E~~~klE~Ev~~~v~ek~aLqqel~~lkee~~~Ln~k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~--- 677 (1849)
+.-..++. +. -.++.-.=+.+|..+.+ .+-.|.-.-+.|-+.+..+.
T Consensus 492 k~aq~lee---------------~r-rred~~~d~sqhlq~ee--------------l~~alektkQel~~tkarl~stq 541 (654)
T KOG4809|consen 492 KNAQLLEE---------------VR-RREDSMADNSQHLQIEE--------------LMNALEKTKQELDATKARLASTQ 541 (654)
T ss_pred HHHHHHHH---------------HH-HHHhhhcchHHHHHHHH--------------HHHHHHHHhhChhhhhhHHHHHH
Confidence 32222211 10 01111111222322222 23334444444444444433
Q ss_pred ---HHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhHhHhhHHHHHhhhHHH
Q 000217 678 ---CEKVALLEKLEI-----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV 749 (1849)
Q Consensus 678 ---~EK~~L~~kLq~-----mekLlEkns~LE~SLSd~n~ELegLR~K~k~LEesc~~L~~EKs~L~sEk~~LvSQLq~~ 749 (1849)
+||.+.+.+|.+ ++.+++....++++ -+--+..+..-+-+.++...++.+....+-++.-.+-|+-..
T Consensus 542 qslaEke~HL~nLr~errk~Lee~lemK~~a~k~----~i~~d~~~~~~~~~~~~~~k~~~ev~~~~~~k~~~~~ql~~~ 617 (654)
T KOG4809|consen 542 QSLAEKEAHLANLRIERRKQLEEILEMKKPAWKP----GIHADMWRETHKPSNETVTKGSTEVTLAECLKWLTTFQLVSI 617 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc----CCCHHHHHHHhhhhhhHHHhhHHHHHHHHHHccccHHHHHHH
Confidence 678888888876 33344333333332 112244555566666677777777776666666665555544
Q ss_pred HH
Q 000217 750 NE 751 (1849)
Q Consensus 750 ~~ 751 (1849)
+.
T Consensus 618 ~~ 619 (654)
T KOG4809|consen 618 GL 619 (654)
T ss_pred HH
Confidence 43
No 377
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.04 E-value=9.7e+02 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000217 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1849)
Q Consensus 424 l~l~~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~ 461 (1849)
+..|=+....+...||.++++.+.++..|..||+.+..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777778888888888877777777776655443
No 378
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.64 E-value=2e+03 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 000217 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1849)
Q Consensus 428 ~qq~~~kI~~LE~elS~sQeEv~RL~~Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L 487 (1849)
+.....++..+-..+..+..++..|..-+......|..+-.++...|.++..|+-+..+-
T Consensus 25 l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~ 84 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQ 84 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHH
Confidence 445556667777777778888888888888888888888888888888888887777765
No 379
>PRK02119 hypothetical protein; Provisional
Probab=20.51 E-value=3.5e+02 Score=26.90 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHhHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000217 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424 (1849)
Q Consensus 377 e~IS~LE~kI~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal 424 (1849)
++|..||.+|...+..+..||.-+-.-...++.|+.++..|.....++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 380
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.50 E-value=1.8e+03 Score=27.96 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLA 443 (1849)
Q Consensus 405 ~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI~~LE~elS 443 (1849)
..+...+..+..-+...++.++++|.+.=...-|+.++.
T Consensus 12 ~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~ 50 (355)
T PF09766_consen 12 FRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIK 50 (355)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 344444555555556666777776666555555555544
Done!