Query 000217
Match_columns 1849
No_of_seqs 151 out of 168
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 01:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 52.1 86 0.0062 28.5 16.3 41 237-281 5-45 (185)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.4 1.5E+02 0.011 27.6 14.1 46 390-435 87-132 (133)
3 d2ap3a1 a.24.27.1 (A:12-196) H 29.2 1.9E+02 0.014 25.9 21.3 25 260-284 10-34 (185)
4 d1seta1 a.2.7.1 (A:1-110) Sery 24.9 1.9E+02 0.014 26.3 10.2 66 387-452 31-97 (110)
5 d1z0pa1 a.2.18.1 (A:1-77) Hypo 18.4 1.1E+02 0.0082 26.8 6.3 39 27-65 13-51 (77)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 18.0 2.2E+02 0.016 27.2 9.3 54 637-690 71-124 (129)
7 d1seta1 a.2.7.1 (A:1-110) Sery 15.5 1.8E+02 0.013 26.4 7.8 66 760-825 30-96 (110)
8 d1qvra2 c.37.1.20 (A:149-535) 14.6 2.5E+02 0.018 31.1 10.0 73 237-309 253-329 (387)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 12.3 4.6E+02 0.034 23.5 11.2 31 482-512 72-102 (107)
10 d1u5pa2 a.7.1.1 (A:1772-1872) 10.8 3.8E+02 0.028 22.7 8.2 64 455-518 32-95 (101)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=52.08 E-value=86 Score=28.53 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 000217 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDS 281 (1849)
Q Consensus 237 ~EI~~Lkk~i~~LqtEKE~~~lqY~~slek~~~LE~eis~aQ~~~ 281 (1849)
.+|..+++.+-.+.... -.+.....++..++.++..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~----~~~~~~~~k~~~~e~~~~~~~~~~ 45 (185)
T d2ap3a1 5 KEIKAYLKQVDKIKDDE----EPIKTVGKKIAELDEKKKKLTEDV 45 (185)
T ss_dssp HHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555422 233344566666766665555443
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.42 E-value=1.5e+02 Score=27.64 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000217 390 EEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAI 435 (1849)
Q Consensus 390 ee~~~~ln~~~e~~e~ev~~Lk~~i~kL~Eekeal~l~~qq~~~kI 435 (1849)
++....++.+++.++..++.+...+.+++.....+...++++.+++
T Consensus 87 ~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a~ 132 (133)
T d1fxkc_ 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666666666666666666666666655543
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.16 E-value=1.9e+02 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 000217 260 YRQSLERLSNLESEVSHAREDSKGL 284 (1849)
Q Consensus 260 Y~~slek~~~LE~eis~aQ~~~~~L 284 (1849)
|+..+.++.+.+..+...+..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~k~~~~ 34 (185)
T d2ap3a1 10 YLKQVDKIKDDEEPIKTVGKKIAEL 34 (185)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444433
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.86 E-value=1.9e+02 Score=26.30 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=33.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 387 LHSEEDSKRINKVADKAESEVERLKQALGKL-TEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1849)
Q Consensus 387 ~~aee~~~~ln~~~e~~e~ev~~Lk~~i~kL-~Eekeal~l~~qq~~~kI~~LE~elS~sQeEv~RL 452 (1849)
..+...-+.+...++.+..+-..+-++|++. .+..+++..+...+.+.|..++..+...++++..+
T Consensus 31 ~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 31 LALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555666543 24445555555555555555555555555554443
No 5
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=18.38 E-value=1.1e+02 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=25.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhch
Q 000217 27 KWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKR 65 (1849)
Q Consensus 27 kwL~~~l~~md~kvk~~lkli~ed~dsfa~raemyy~kR 65 (1849)
.|+...++-.+--|+.--++.++|+|.=|+-|-.-|..|
T Consensus 13 ~Wv~~Qi~in~mAm~~s~kv~eeD~derA~dA~iRYEsk 51 (77)
T d1z0pa1 13 DWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESK 51 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 477777777777777788899999999777774444444
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.02 E-value=2.2e+02 Score=27.20 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcCCCCcchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000217 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM 690 (1849)
Q Consensus 637 k~~~l~eql~~l~~~~e~~~~~vkeLQ~~n~~Lke~~s~~~~EK~~L~~kLq~m 690 (1849)
....+...|=..+..++-...++++|+.+|.....+......++..|+.+++.+
T Consensus 71 qId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~ 124 (129)
T d1ykhb1 71 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124 (129)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667667788888889999999999999999999999999999998863
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=15.48 E-value=1.8e+02 Score=26.35 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=28.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000217 760 NNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLD-NEKSCLITERVNLVSQLDIARKGLKDLEKSYAE 825 (1849)
Q Consensus 760 ns~LE~slsd~~~ElE~lr~K~k~lEes~~~l~-~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~e 825 (1849)
+..|...+-.+..+++.++.+-+.+-...+..+ .+...+..+-..|-++|..++..+..++.++..
T Consensus 30 i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 30 LLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444433221 122233344444444444444444444444433
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=14.61 E-value=2.5e+02 Score=31.05 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhhccchhHhh---HHHHHHHHHHHHHHHHHHHH
Q 000217 237 MEILTLKNALAKLEAEKEAGLLQ-YRQSLERLSNLESEVSHAREDSKGLSEQAS---IAEAEVQTLKEALARLETER 309 (1849)
Q Consensus 237 ~EI~~Lkk~i~~LqtEKE~~~lq-Y~~slek~~~LE~eis~aQ~~~~~L~era~---~ae~E~~sLk~~la~L~~ek 309 (1849)
.+++.++..|..|+.|+++..-- -..+.+|+.+++.+++..+++...|.++-. ..-.+++.|+..+..+..+.
T Consensus 253 ~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 253 EEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666554321 224568888888888888887777764322 22334555555555444443
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.32 E-value=4.6e+02 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000217 482 SELESMVQKMGSQSQELTEKQKELGRLWTCI 512 (1849)
Q Consensus 482 ~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~si 512 (1849)
...+.+...+..+...+.....++..++..+
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444443
No 10
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.77 E-value=3.8e+02 Score=22.65 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=42.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000217 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLR 518 (1849)
Q Consensus 455 Eie~~~~kLk~lE~~~~~LE~~~q~L~~E~e~L~qk~~~~~qEL~ek~~Ei~~L~~siqeE~~k 518 (1849)
.++....+...++......+..+..+....+.|...-..-...+..+..++...|..+.+....
T Consensus 32 ~~~~ll~~h~~~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~~ 95 (101)
T d1u5pa2 32 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAA 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666777777766555555566777777888877777765433
Done!