Query 000219
Match_columns 1845
No_of_seqs 271 out of 436
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 02:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 99.9 3E-25 1E-29 240.9 10.4 132 33-187 6-138 (183)
2 2rkk_A Vacuolar protein sortin 99.7 1.2E-16 4.1E-21 170.5 10.7 119 46-184 5-140 (168)
3 4hg6_A Cellulose synthase subu 54.4 5.1 0.00017 52.6 2.7 133 1219-1364 224-362 (802)
4 1ich_A TNF-1, tumor necrosis f 25.9 27 0.00093 35.6 2.0 81 1025-1105 11-103 (112)
5 4hpq_C ATG17, KLTH0D15642P; au 13.5 3.4E+02 0.012 33.3 8.0 74 115-210 322-395 (413)
6 3hyb_A RBCX protein; rubisco, 13.1 1E+02 0.0035 33.0 2.8 103 159-285 29-135 (155)
7 1t8h_A YLMD protein sequence h 8.9 1E+02 0.0036 35.7 1.4 24 1325-1357 28-52 (277)
8 3ka1_A RBCX protein; chaperone 7.6 4.7E+02 0.016 27.3 5.3 100 160-283 10-114 (126)
9 1l6x_B Minimized B-domain of p 7.3 64 0.0022 26.5 -0.9 24 1240-1263 1-24 (34)
10 1zda_A Mini protein A domain, 6.4 1E+02 0.0034 26.0 -0.2 25 1239-1263 5-29 (38)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=99.91 E-value=3e-25 Score=240.85 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=111.8
Q ss_pred CCCCcCccccCccChhHHHHhhhhhccCCCeeehhhhHHHHHhcccCCCCCCCcchhHHHHHHhHHHHHHhhh-cccCCc
Q 000219 33 IAGYVPSSLANNRDIDAILRAADEIQEEDPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGTI 111 (1845)
Q Consensus 33 ~s~~VP~sL~~~~~I~~iLrvA~Eie~~dP~VAylcr~yA~e~a~~lDp~S~grgVrQFkt~Ll~~leq~le~-~~~~~i 111 (1845)
+-+.||++|+ +|.||||+|+|+|++||+||||||+||+|++++||++ |+||+||+|+||++||+.+.. .+++.|
T Consensus 6 ~l~~vP~~LK---~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~--~~e~~~f~~~LLd~LE~~K~~~~~~dai 80 (183)
T 2lxl_A 6 PLPPLPAQFK---SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSK--TPECRKFLSKLMDQLEALKKQLGDNEAI 80 (183)
T ss_dssp CCCCCCGGGS---SSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSC--CTTHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCCCChhHH---hHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHHHHHHHhccchhHH
Confidence 3457999999 8999999999999999999999999999999999994 799999999999999987443 222222
Q ss_pred cCchhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 000219 112 DRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFATLKVLGMVLEQLTQEIPEE 187 (1845)
Q Consensus 112 ~~~~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~tA~vL~eVL~~~~~~~~~~ 187 (1845)
++|.. .|.|+++|+.|.| +.+|++||+ ++++ ++++|.|+||++|||||+.|++.+++.
T Consensus 81 --~~~~~-~~ayve~fAlklF----~~Ad~~dRa-~~~t----------~~~~k~F~aA~~f~eVL~~fg~l~~e~ 138 (183)
T 2lxl_A 81 --TQEIV-GCAHLENYALKMF----LYADNEDRA-GRFH----------KNMIKSFYTASLLIDVITVFGELTDEN 138 (183)
T ss_dssp --HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-TCCC----------HHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred --hhHHH-HHHHHHHHHHHHH----HHHHHHhhc-cchh----------HHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 23333 6778888887775 899999999 5665 999999999999999999999986554
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-16 Score=170.54 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=102.3
Q ss_pred ChhHHHHhhhhhccC-CCeeehhhhHHHHHhcccCCCCCCCcchhHHHHHHhHHHHHHhhh-cccCC-------------
Q 000219 46 DIDAILRAADEIQEE-DPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGT------------- 110 (1845)
Q Consensus 46 ~I~~iLrvA~Eie~~-dP~VAylcr~yA~e~a~~lDp~S~grgVrQFkt~Ll~~leq~le~-~~~~~------------- 110 (1845)
+|.|+|+.|+|+|+. ||.||||||+||+|.+++++. .++++++|.+.||++||+.+.. .++++
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~~ 82 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNT 82 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTTH
T ss_pred hHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhh
Confidence 689999999999999 999999999999999999977 5699999999999999998554 34444
Q ss_pred -ccCchhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHH-HHHHHHHHHHHhccCC
Q 000219 111 -IDRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFA-TLKVLGMVLEQLTQEI 184 (1845)
Q Consensus 111 -i~~~~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~-tA~vL~eVL~~~~~~~ 184 (1845)
| ++|+. .+.|.++|+.|.| ..+|++||+ |+++ ++++|+|+ ||..+++||..+|+.+
T Consensus 83 ~i--~d~~~-a~a~ve~FAlklF----~~Ad~~dra-g~~~----------k~~~k~fy~ta~~F~avl~~fg~~~ 140 (168)
T 2rkk_A 83 LI--HDQEK-AKIYMLNFTMSLY----NEKLKQLKD-GPWD----------VMLKRSLWCCIDLFSCILHLWKENI 140 (168)
T ss_dssp HH--HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-SCCS----------HHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred hc--ccHHH-HHHHHHHHHHHHH----HHHHHHHhc-CCcc----------hhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4 45554 8999999998886 899999999 6776 88999999 7999999999999885
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=54.36 E-value=5.1 Score=52.62 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=79.7
Q ss_pred CCCCCCccceeeeecccccccccCCccchH-HHHhhhhhhHHHHhhccCCCCceEecccceeeccc-----chhhhcccc
Q 000219 1219 EGKPENQNHAVIFTRGNAIQTIDMNQDNYF-EEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS-----VSSLAYFMS 1292 (1845)
Q Consensus 1219 eGKpeNQNhAiIFtRGE~lQtIDmNQDnYl-EE~lKmrnlL~ef~~~~g~~~~~IlG~RE~IFt~~-----v~~La~f~a 1292 (1845)
.||+.|-|+++=-++||++-++|.+- .+ .++| +.+++.|+++. .+.+++.+-++..++ .+......+
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L--~~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFL--ARTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCPP 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHH--HHHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSCC
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCC--CcChHHH--HHHHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhhhH
Confidence 48999999999999999999999853 22 2222 24556675543 345666554444432 222222222
Q ss_pred cchhhhhhhhhHhhcccccccccccCCcccccccccccCcccccccccccchhhhhhhhhhccCceeeeeee
Q 000219 1293 NQETSFVTLGQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHEY 1364 (1845)
Q Consensus 1293 ~qE~sF~Tl~qR~la~Pl~vr~HYGHPDvfd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i~h~ey 1364 (1845)
.+..|-...++.... .+.-.--|+==++.|.....-||... -.++||..-++-...+|.++.++.-
T Consensus 297 -~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 297 -ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp -TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECCC
T ss_pred -HHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEecC
Confidence 223344444444432 22223345544555555555577764 3468999999998888888877653
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=25.88 E-value=27 Score=35.64 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCccHHHHHHhhCc-hhhhhHHHhhCCCCCCccccccCCch-----hhhhhhhhhhccc------cchhhhhcccccHHH
Q 000219 1025 DGISILFYLQKIYP-DEWKNFLSRIGRDENSQDTELFDSPS-----DILELRFWASYRA------QTLARTVRGMMYYRK 1092 (1845)
Q Consensus 1025 dgisiL~YLq~iyP-dEW~NFler~~~~~~~~~~~~~~~~~-----~~l~lRlWAS~Rg------QTL~RTVrGmMyY~~ 1092 (1845)
+.-.+|+..-...| .+|+.|++++|..+.+-+.-..+.|. .-.=||.|----| +||..+.+-|=--.-
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHHH
Confidence 45677888887777 89999999999765432211011121 2235889998866 889999998877788
Q ss_pred HHHHHHHhhcCCC
Q 000219 1093 ALMLQAYLERMTS 1105 (1845)
Q Consensus 1093 Alkll~~le~~~~ 1105 (1845)
|-+++..++.++.
T Consensus 91 ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 91 LEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHhcccc
Confidence 8888887777654
No 5
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=13.51 E-value=3.4e+02 Score=33.30 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhh
Q 000219 115 QDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDS 194 (1845)
Q Consensus 115 ~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~ 194 (1845)
+.+.+|..||++|..-| +.. .-|++||+.-..|.-.+++=..+=|+++.+.+ .++. +.
T Consensus 322 ~~~~~L~~~Y~~f~~aY---------~~l---------L~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d---~~~R-e~ 379 (413)
T 4hpq_C 322 RQTRNLLDFYANFERSY---------HNL---------LKEVKRRKETAAKLSQILKSCETQLEQINTAD---LRER-QM 379 (413)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HH
T ss_pred HHHHHHHHHHHHHHHHH---------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HH
Confidence 45667788888885544 111 12567777777777777777788888877642 2222 34
Q ss_pred hhhccccCcccccccC
Q 000219 195 DAAMTDDLVAYNIVPL 210 (1845)
Q Consensus 195 ~~~~~~~~~~YNIlPl 210 (1845)
--..-+.|-|=+|+|=
T Consensus 380 F~~~~G~yLP~diwpg 395 (413)
T 4hpq_C 380 FLLENGNYLPETIWPD 395 (413)
T ss_dssp HHHHSSSSSCGGGSTT
T ss_pred HHHHhcccCChhhCCC
Confidence 4556789999999873
No 6
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=13.06 E-value=1e+02 Score=33.02 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhhhhhccccCcccccccCCCcccccccccchhHHHHHHHHHhcCCC
Q 000219 159 KTVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDSDAAMTDDLVAYNIVPLDAPTVANAIVSFPEVQAAVSALKYFGDL 238 (1845)
Q Consensus 159 ~~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~~~~~~~~~~~YNIlPl~~~~~~~~i~~~pev~aA~~al~~~~~l 238 (1845)
.+++.--.|-|...+--||.++.+.+|+.-....+=.+.+..+-+.| |--|-.. -..--++.-+||.+.+.
T Consensus 29 Dtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s~~iqDGe~f-l~~L~~E-~~~LA~RIM~VRehlae------- 99 (155)
T 3hyb_A 29 DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGKVQDGEKY-IEELFLE-KPDLALRIMTVREHIAE------- 99 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSSHHHH-HHHHHHH-CHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCcccHHHH-HHHHHhh-CHHHHHHHHHHHHHHHH-------
Confidence 34666678999999999999999988766332211111222222222 0000000 01122333355555531
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHh--ccccccccchHHHH--HHHHcccc
Q 000219 239 PRLPEDFPIPPSRNIDMLDFLHFVF--GFQKDNVSNQREHI--VLLLANEQ 285 (1845)
Q Consensus 239 P~w~~~~~~p~~~i~DIfd~L~~~F--GFQkDNVrNQrEHL--mlLLaNr~ 285 (1845)
.++|++..+- |.|+.|++=+|+|| |+.++...
T Consensus 100 ---------------~v~eflpeMv~~~IqqaN~el~Rq~LeR~t~~~~~~ 135 (155)
T 3hyb_A 100 ---------------EIAEFLPEMVVTGIQQANMEKRRQHLERMTQVSLSH 135 (155)
T ss_dssp ---------------HHGGGHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 2444454443 78999999999999 77766443
No 7
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=8.94 E-value=1e+02 Score=35.72 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=15.0
Q ss_pred cccccc-CcccccccccccchhhhhhhhhhccCc
Q 000219 1325 VFHITR-GGISKASRVINISEDIYAGFNTTLRQG 1357 (1845)
Q Consensus 1325 ~f~~tr-GGvSKAsk~i~lsEDIfaG~n~~lRgG 1357 (1845)
.+++|| ||||++ .|+++|.-+.-|
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEEcCCCCccCC---------cccceeccCCCC
Confidence 345666 887765 577777554433
No 8
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=7.61 E-value=4.7e+02 Score=27.27 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhh-hhhccccCcccccccCCCcccccccccchhHHHHHHHHHhcCCC
Q 000219 160 TVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDS-DAAMTDDLVAYNIVPLDAPTVANAIVSFPEVQAAVSALKYFGDL 238 (1845)
Q Consensus 160 ~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~-~~~~~~~~~~YNIlPl~~~~~~~~i~~~pev~aA~~al~~~~~l 238 (1845)
+++.--.|-|...+--||.++.+.+|+.-....+= .+.+..+-+.| |--|-.. -..--++.-+||.+.+.
T Consensus 10 tak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~f-l~~L~~E-~~~LA~RIM~vR~hla~------- 80 (126)
T 3ka1_A 10 TTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERY-LEALFRE-QPDLGFRILTVREHLAE------- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHH-HHHHHHH-CHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHH-HHHHHhh-CHHHHHHHHHHHHHHHH-------
Confidence 46667789999999999999998877652222111 11111222222 0000000 01223344467766653
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHH--hccccccccchHHHH--HHHHcc
Q 000219 239 PRLPEDFPIPPSRNIDMLDFLHFV--FGFQKDNVSNQREHI--VLLLAN 283 (1845)
Q Consensus 239 P~w~~~~~~p~~~i~DIfd~L~~~--FGFQkDNVrNQrEHL--mlLLaN 283 (1845)
.++|+|..+ =|.|++|++=+|+|| |..++.
T Consensus 81 ---------------~v~d~l~eMv~~~I~q~N~e~~Rq~Ler~t~~~~ 114 (126)
T 3ka1_A 81 ---------------MVADYLPEMLRAGIQQANLQQRAQQLERMTQVSE 114 (126)
T ss_dssp ---------------HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 122334333 378999999999999 666543
No 9
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=7.32 E-value=64 Score=26.49 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=19.9
Q ss_pred ccCCccchHHHHhhhhhhHHHHhh
Q 000219 1240 IDMNQDNYFEEALKMRNLLEEFHA 1263 (1845)
Q Consensus 1240 IDmNQDnYlEE~lKmrnlL~ef~~ 1263 (1845)
+|+-|.|-|=|.|+|.||-+|=..
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQrn 24 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQRN 24 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHH
Confidence 367789999999999999887553
No 10
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=6.43 E-value=1e+02 Score=25.96 Aligned_cols=25 Identities=40% Similarity=0.434 Sum_probs=21.3
Q ss_pred cccCCccchHHHHhhhhhhHHHHhh
Q 000219 1239 TIDMNQDNYFEEALKMRNLLEEFHA 1263 (1845)
Q Consensus 1239 tIDmNQDnYlEE~lKmrnlL~ef~~ 1263 (1845)
-+++-|.|-|=|.|+|.||-+|=..
T Consensus 5 ~~~~~QQnaFYevLh~~nLtEeQrn 29 (38)
T 1zda_A 5 SFNMQQQRRFYEALHDPNLNEEQRN 29 (38)
T ss_dssp TTTTTSSHHHHHHHSCSSSCTTHHH
T ss_pred chhHHHHHHHHHHHcCCCCCHHHHH
Confidence 4688999999999999999877543
Done!