Query 000219
Match_columns 1845
No_of_seqs 271 out of 436
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 02:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 12.6 22 0.0016 29.4 0.2 9 353-361 2-10 (49)
2 d1j98a_ d.185.1.2 (A:) Autoind 12.3 9.6 0.0007 38.3 -2.6 100 282-401 31-131 (154)
3 d1wlna1 b.26.1.2 (A:8-114) Afa 11.4 61 0.0044 29.9 2.9 44 1202-1246 19-73 (107)
4 d1xhba2 c.68.1.17 (A:95-422) P 10.6 45 0.0033 35.3 1.9 33 1220-1252 94-129 (328)
5 d1gm5a1 a.24.21.1 (A:7-105) Re 7.0 3.8E+02 0.028 24.5 6.4 32 846-888 36-67 (99)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 6.6 32 0.0023 28.2 -1.1 12 1271-1282 18-29 (48)
7 d1r9wa_ d.89.1.2 (A:) Replicat 6.4 76 0.0055 31.3 1.2 43 1340-1386 39-82 (145)
8 d1x4la1 g.39.1.3 (A:8-36) Four 5.9 65 0.0047 23.8 0.3 8 1528-1535 11-18 (29)
9 d1vjea_ d.185.1.2 (A:) Autoind 5.8 27 0.0019 34.8 -2.5 91 283-399 31-124 (149)
10 d1n0ua4 d.58.11.1 (A:482-560) 5.5 1.2E+02 0.0084 26.6 1.9 33 1140-1172 7-39 (79)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.63 E-value=22 Score=29.36 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=7.5
Q ss_pred cccccchhh
Q 000219 353 ANIRFLPEC 361 (1845)
Q Consensus 353 aNLRFMPEC 361 (1845)
+.+||+|||
T Consensus 2 s~~rFC~eC 10 (49)
T d1twfi1 2 TTFRFCRDC 10 (49)
T ss_dssp CCCCBCSSS
T ss_pred CceecChhc
Confidence 568999998
No 2
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=12.33 E-value=9.6 Score=38.31 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=56.1
Q ss_pred ccccccCCCCCC-CCCcchHHHHHHHHHHHHhhHHHHHHhhcCCcccccccccchhhHHHHHHHHHHhhhcccccccchh
Q 000219 282 ANEQSRLGIPDE-NEPKLDEAAVQRVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLPE 360 (1845)
Q Consensus 282 aNr~sR~~p~~~-~~~~ld~~AL~~Lh~k~~~NYkkWC~~L~~~~~w~~~~~~s~~~~l~~iaLYLLIWGEAaNLRFMPE 360 (1845)
.+-..|+..|+. ..+...-++|..|.|.+..|+..|....+.-. |.||.+.+ |.||++||+- -||
T Consensus 31 t~fDlR~~qPN~e~m~~~~lHTlEHL~At~lRn~~~~~d~~~iI~-~gPMGCrT--------GFYl~~~g~~-----~~~ 96 (154)
T d1j98a_ 31 NKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIID-ISPMGCQT--------GYYLVVSGET-----TSA 96 (154)
T ss_dssp EEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCSSEEEEE-EEECTTSS--------EEEEEEEECC-----CHH
T ss_pred EEEEEeecCCChhhCCCcchHHHHHHHHHHHHhCccccCCccEEE-eCCCcccc--------ccEEEEECCC-----CHH
Confidence 345678864432 22333345566789999999988864221111 56776654 6899999974 455
Q ss_pred hHHHHHHhhhHhhhhhhcccCCCCCCCCcCCCccccccccc
Q 000219 361 CLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQVI 401 (1845)
Q Consensus 361 CLCfIFH~ma~el~~~l~~~~~~~~~~~~~~~e~sFLd~VI 401 (1845)
=+.=+.+.+. .++++-. .++-+...+-|.|+++=.
T Consensus 97 ~i~~l~~~~l---~~i~~~~---eVPga~~~~CGny~~hsL 131 (154)
T d1j98a_ 97 EIVDLLEDTM---KEAVEIT---EIPAANEKQCGQAKLHDL 131 (154)
T ss_dssp HHHHHHHHHH---HHHTTCC---SCTTCSTTTCTTTTCCCH
T ss_pred HHHHHHHHHH---HHHhccC---cCCCCChhcCCChhhCCH
Confidence 5555555543 3343321 122222345667777643
No 3
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.37 E-value=61 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.6
Q ss_pred CcceeEEEecCCCCCCCCCCC-CC----------ccceeeeecccccccccCCccc
Q 000219 1202 KDKEIYSIKLPGNPKLGEGKP-EN----------QNHAVIFTRGNAIQTIDMNQDN 1246 (1845)
Q Consensus 1202 ~~~~~yrikLpG~pilGeGKp-eN----------QNhAiIFtRGE~lQtIDmNQDn 1246 (1845)
....+|+++ +|...+|-|++ +| ..||.|-..++.+.+.|.+..|
T Consensus 19 ~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 19 DKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CccEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 344556666 45555665543 22 4699999999999999998876
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.60 E-value=45 Score=35.27 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=22.2
Q ss_pred CCCCCccceeeeecccccccccCC---ccchHHHHh
Q 000219 1220 GKPENQNHAVIFTRGNAIQTIDMN---QDNYFEEAL 1252 (1845)
Q Consensus 1220 GKpeNQNhAiIFtRGE~lQtIDmN---QDnYlEE~l 1252 (1845)
|.+...|.|+--++||+|=.+|.. ..++||+.+
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHH
Confidence 566677777777788887777655 455555543
No 5
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.99 E-value=3.8e+02 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhccccccccccCCchhHHHHHHHHHHHhhhc
Q 000219 846 VERIYDDINVSVEKRSIHVDFQLTKLPLVISRVTALMGVLKEA 888 (1845)
Q Consensus 846 i~~i~~~i~~si~~~~ll~~~~~~~L~~l~~~~~~L~~~L~~~ 888 (1845)
+...+++|+ ++|+. -|.+.++++++++....-
T Consensus 36 ~~El~eeId-----DpLle------n~el~~kLqeF~~Yi~~~ 67 (99)
T d1gm5a1 36 IHQLLKELD-----DPLLE------NKDLEEKLQAFLDYVKEI 67 (99)
T ss_dssp HHHHHHHCC-----CGGGG------CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhc-----cHhhc------CHHHHHHHHHHHHHHHHh
Confidence 666676665 44444 488999999998877543
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.59 E-value=32 Score=28.17 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=8.4
Q ss_pred eEecccceeecc
Q 000219 1271 TILGVREHVFTG 1282 (1845)
Q Consensus 1271 ~IlG~RE~IFt~ 1282 (1845)
+=+-+|+||||.
T Consensus 18 ~~~SvrdHiFsk 29 (48)
T d2yrka1 18 ARLSIRDHIFSK 29 (48)
T ss_dssp SSSCHHHHHTSH
T ss_pred eecchHhhhhhH
Confidence 345578899983
No 7
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=6.39 E-value=76 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.0
Q ss_pred cccchhhhhhhhhhccCceeeeeeeeeeccc-cccCccccccceeccc
Q 000219 1340 INISEDIYAGFNTTLRQGNVTHHEYIQVGKG-RDVGLNQIAVFEGKVA 1386 (1845)
Q Consensus 1340 i~lsEDIfaG~n~~lRgG~i~h~eyiq~GKG-RDvG~~qI~~Fe~Kia 1386 (1845)
-+++||++.|...+|+ .||+|+|+=.- -+.|+-.....+-|.+
T Consensus 39 ~gv~~~l~ea~k~lLq----~hc~y~~~~~~~~~~g~~~L~Ll~Fk~~ 82 (145)
T d1r9wa_ 39 FGVNPTIAEGFKTLIQ----PFILYAHIQCLDCKWGVLILALLRYKCG 82 (145)
T ss_dssp EEECHHHHHTHHHHHG----GGEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEeCHHHHHHHHHHHH----hheeEEEEEeccCCCceEEEEEEEEecC
Confidence 3688999999999998 89999986311 1123444444555554
No 8
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.92 E-value=65 Score=23.77 Aligned_cols=8 Identities=38% Similarity=0.900 Sum_probs=6.5
Q ss_pred ccCceeec
Q 000219 1528 HGGARYQA 1535 (1845)
Q Consensus 1528 ~GgAkY~a 1535 (1845)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68888876
No 9
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.83 E-value=27 Score=34.80 Aligned_cols=91 Identities=12% Similarity=0.188 Sum_probs=49.4
Q ss_pred cccccCCCCCCCCCcchHH---HHHHHHHHHHhhHHHHHHhhcCCcccccccccchhhHHHHHHHHHHhhhcccccccch
Q 000219 283 NEQSRLGIPDENEPKLDEA---AVQRVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLP 359 (1845)
Q Consensus 283 Nr~sR~~p~~~~~~~ld~~---AL~~Lh~k~~~NYkkWC~~L~~~~~w~~~~~~s~~~~l~~iaLYLLIWGEAaNLRFMP 359 (1845)
+-..|+..|.+ +-++.. +|..|.|.+..|+..|-= .|.||.+++ |.||++||+-. |
T Consensus 31 ~fDlR~~qPN~--~~m~~~~~HTlEHL~A~~lRn~~~~iI------d~sPMGCrT--------GFYl~~~g~~~-----~ 89 (149)
T d1vjea_ 31 KYDLRFLQPNQ--GAIDPAAIHTLEHLLAGYMRDHLEGVV------DVSPMGCRT--------GMYMAVIGEPD-----E 89 (149)
T ss_dssp EEEEECSCTTS--CCCCHHHHHHHHHHHHHHHHHHCTTEE------EEEECTTSS--------EEEEEEESSCC-----H
T ss_pred EEEEeecCCCc--ccCCCcchhHHHHHHHHHHHhCCCCeE------EECCCcccc--------ccEEEEeCCCC-----H
Confidence 34568865432 334544 455678888888754311 156787655 68999999743 4
Q ss_pred hhHHHHHHhhhHhhhhhhcccCCCCCCCCcCCCccccccc
Q 000219 360 ECLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQ 399 (1845)
Q Consensus 360 ECLCfIFH~ma~el~~~l~~~~~~~~~~~~~~~e~sFLd~ 399 (1845)
|=+.=+.+.+. .++++.... ++-+...+-|.|+++
T Consensus 90 ~~i~~~~~~~l---~~i~~~~~~--VPga~~~qCGny~~h 124 (149)
T d1vjea_ 90 QGVMKAFEAAL---KDTAGHDQP--IPGVSELECGNYRDH 124 (149)
T ss_dssp HHHHHHHHHHH---HHHHTCCSC--CTTCSTTTCTTTTCC
T ss_pred HHHHHHHHHHH---HHHHhccCC--CCCCChhcCCChhhC
Confidence 54544554443 344432221 111222345566665
No 10
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.53 E-value=1.2e+02 Score=26.64 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.3
Q ss_pred EEEEeccCCCCcCCccchhhHHHHHHhCcccee
Q 000219 1140 VVTSQIYGKQKEDQKPEAADIALLMQRNEALRV 1172 (1845)
Q Consensus 1140 VvscQ~Yg~~k~~~~~~a~di~~Lm~~~p~LrV 1172 (1845)
|+++-++-+.+.+.+.-.+-+..|.+..|+++|
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v 39 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT 39 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 678888887777766667788999999999987
Done!