Query 000221
Match_columns 1837
No_of_seqs 781 out of 2354
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 00:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 8.2E-24 1.8E-28 287.5 128.0 505 931-1531 1192-1708(1930)
2 KOG0996 Structural maintenance 100.0 5.9E-23 1.3E-27 257.9 85.1 544 262-832 230-898 (1293)
3 KOG0161 Myosin class II heavy 100.0 3.2E-17 6.9E-22 224.0 133.8 154 859-1012 1288-1442(1930)
4 TIGR00606 rad50 rad50. This fa 100.0 2E-19 4.3E-24 254.0 111.4 277 1423-1702 824-1145(1311)
5 KOG4674 Uncharacterized conser 99.9 3.7E-13 8.1E-18 181.0 154.5 218 327-566 54-276 (1822)
6 KOG4674 Uncharacterized conser 99.9 3.9E-13 8.4E-18 180.9 160.9 30 1255-1284 1108-1137(1822)
7 TIGR00606 rad50 rad50. This fa 99.9 6.4E-15 1.4E-19 208.6 109.6 66 241-306 134-205 (1311)
8 KOG0962 DNA repair protein RAD 99.8 2.2E-11 4.9E-16 159.6 104.1 347 1421-1820 819-1221(1294)
9 COG1196 Smc Chromosome segrega 99.8 7.8E-13 1.7E-17 185.3 95.6 154 275-434 202-355 (1163)
10 PF01576 Myosin_tail_1: Myosin 99.8 2.1E-22 4.6E-27 268.5 0.0 503 932-1530 135-649 (859)
11 TIGR02169 SMC_prok_A chromosom 99.8 2.1E-13 4.6E-18 195.8 91.2 144 283-431 200-344 (1164)
12 TIGR02168 SMC_prok_B chromosom 99.8 6E-11 1.3E-15 171.1 94.4 147 282-433 201-347 (1179)
13 TIGR02169 SMC_prok_A chromosom 99.7 1.6E-08 3.4E-13 145.9 104.3 18 1618-1635 963-982 (1164)
14 KOG0964 Structural maintenance 99.7 3.2E-09 7E-14 132.8 77.8 254 1261-1538 672-943 (1200)
15 TIGR02168 SMC_prok_B chromosom 99.7 3.8E-08 8.3E-13 142.2 101.8 19 1191-1209 1025-1043(1179)
16 COG1196 Smc Chromosome segrega 99.7 2.1E-07 4.6E-12 131.3 103.0 37 750-786 457-493 (1163)
17 KOG0933 Structural maintenance 99.6 1.2E-08 2.5E-13 128.7 75.0 92 571-665 476-594 (1174)
18 PF10174 Cast: RIM-binding pro 99.6 1.4E-07 3.1E-12 122.7 87.5 27 525-551 139-165 (775)
19 PRK03918 chromosome segregatio 99.6 9.7E-08 2.1E-12 133.0 84.2 59 241-302 112-177 (880)
20 PRK01156 chromosome segregatio 99.5 8E-08 1.7E-12 133.4 80.1 119 241-366 112-238 (895)
21 PRK02224 chromosome segregatio 99.5 5.9E-08 1.3E-12 134.8 78.9 32 693-724 209-240 (880)
22 KOG0996 Structural maintenance 99.5 1.3E-06 2.7E-11 112.9 81.2 78 460-540 250-327 (1293)
23 PF01576 Myosin_tail_1: Myosin 99.4 1.8E-14 4E-19 193.0 1.2 57 1425-1481 571-627 (859)
24 KOG0018 Structural maintenance 99.4 1.1E-05 2.5E-10 103.8 78.9 124 524-647 405-553 (1141)
25 PF10174 Cast: RIM-binding pro 99.4 1.5E-05 3.3E-10 104.2 92.3 88 340-436 54-141 (775)
26 KOG0964 Structural maintenance 99.3 1.7E-05 3.8E-10 100.5 83.4 42 270-311 188-235 (1200)
27 COG0419 SbcC ATPase involved i 99.3 7.9E-05 1.7E-09 103.3 81.4 64 241-304 118-195 (908)
28 PF12128 DUF3584: Protein of u 99.1 0.00072 1.6E-08 96.1 80.3 56 1676-1733 989-1051(1201)
29 PRK04863 mukB cell division pr 99.0 0.00094 2E-08 94.4 96.5 72 365-436 353-424 (1486)
30 KOG0933 Structural maintenance 99.0 0.00051 1.1E-08 88.2 80.1 143 915-1058 742-888 (1174)
31 PF12128 DUF3584: Protein of u 98.9 0.0025 5.4E-08 90.8 85.7 32 1141-1172 987-1018(1201)
32 PF05701 WEMBL: Weak chloropla 98.9 0.0012 2.5E-08 85.4 61.1 70 1032-1101 314-383 (522)
33 PRK10246 exonuclease subunit S 98.9 0.0036 7.8E-08 87.9 82.3 183 241-434 131-329 (1047)
34 KOG0994 Extracellular matrix g 98.7 0.0032 7E-08 81.3 54.5 67 700-766 1228-1294(1758)
35 PF07888 CALCOCO1: Calcium bin 98.7 0.0019 4E-08 80.7 48.4 27 1032-1058 323-349 (546)
36 KOG0250 DNA repair protein RAD 98.6 0.0077 1.7E-07 79.5 70.5 123 853-975 339-462 (1074)
37 PF05701 WEMBL: Weak chloropla 98.6 0.0071 1.5E-07 78.2 67.3 82 938-1019 277-358 (522)
38 KOG4643 Uncharacterized coiled 98.5 0.011 2.5E-07 76.3 56.6 20 1778-1797 1076-1095(1195)
39 PRK04863 mukB cell division pr 98.5 0.026 5.7E-07 80.3 95.0 19 1735-1754 1439-1457(1486)
40 PF07888 CALCOCO1: Calcium bin 98.5 0.0097 2.1E-07 74.5 50.1 45 1105-1149 411-455 (546)
41 KOG0250 DNA repair protein RAD 98.5 0.017 3.6E-07 76.5 77.3 93 921-1015 262-354 (1074)
42 PRK04778 septation ring format 98.5 0.017 3.8E-07 75.8 54.3 103 688-800 110-224 (569)
43 KOG0976 Rho/Rac1-interacting s 98.5 0.013 2.9E-07 73.2 63.8 14 1808-1821 1117-1130(1265)
44 PF00261 Tropomyosin: Tropomyo 98.4 0.00031 6.8E-09 81.4 30.6 48 1114-1161 172-219 (237)
45 KOG4643 Uncharacterized coiled 98.3 0.033 7.1E-07 72.3 55.6 77 1077-1153 482-558 (1195)
46 KOG0994 Extracellular matrix g 98.3 0.035 7.7E-07 72.3 56.3 68 712-786 1226-1293(1758)
47 PF00261 Tropomyosin: Tropomyo 98.3 0.00065 1.4E-08 78.8 30.8 99 1055-1153 120-218 (237)
48 PF00038 Filament: Intermediat 98.3 0.015 3.3E-07 70.8 44.1 24 890-913 51-74 (312)
49 KOG0976 Rho/Rac1-interacting s 98.2 0.045 9.7E-07 68.8 62.2 39 979-1017 325-363 (1265)
50 KOG0977 Nuclear envelope prote 98.1 0.019 4E-07 72.1 39.7 25 786-810 51-75 (546)
51 PF09787 Golgin_A5: Golgin sub 98.1 0.00034 7.3E-09 90.2 25.9 44 1788-1831 468-511 (511)
52 KOG0962 DNA repair protein RAD 98.1 0.15 3.2E-06 69.6 101.6 44 1294-1337 821-864 (1294)
53 KOG0963 Transcription factor/C 98.1 0.016 3.4E-07 72.3 37.2 39 1797-1835 575-613 (629)
54 PF00038 Filament: Intermediat 98.0 0.062 1.3E-06 65.6 42.1 57 899-955 53-109 (312)
55 KOG0971 Microtubule-associated 98.0 0.16 3.5E-06 65.2 48.0 18 716-733 229-246 (1243)
56 PF05483 SCP-1: Synaptonemal c 97.9 0.15 3.4E-06 64.0 97.5 127 285-428 76-202 (786)
57 PF05483 SCP-1: Synaptonemal c 97.9 0.18 4E-06 63.4 95.9 36 745-780 239-274 (786)
58 KOG0977 Nuclear envelope prote 97.9 0.1 2.2E-06 65.8 39.2 16 979-994 178-193 (546)
59 PRK04778 septation ring format 97.8 0.34 7.4E-06 63.9 58.6 12 1138-1149 482-493 (569)
60 PF09730 BicD: Microtubule-ass 97.8 0.33 7.2E-06 63.7 67.6 41 1113-1153 421-461 (717)
61 PHA02562 46 endonuclease subun 97.8 0.0096 2.1E-07 79.0 30.8 45 241-285 114-165 (562)
62 PF05557 MAD: Mitotic checkpoi 97.6 0.0003 6.4E-09 95.1 13.7 27 1185-1211 621-647 (722)
63 PF06160 EzrA: Septation ring 97.6 0.64 1.4E-05 61.1 55.2 96 691-796 109-216 (560)
64 COG1340 Uncharacterized archae 97.6 0.3 6.6E-06 56.7 35.1 36 1114-1149 210-245 (294)
65 PF09726 Macoilin: Transmembra 97.5 0.083 1.8E-06 70.0 32.7 39 1115-1153 619-657 (697)
66 PF05557 MAD: Mitotic checkpoi 97.4 0.0013 2.9E-08 88.9 15.7 29 783-811 290-318 (722)
67 KOG4673 Transcription factor T 97.4 0.79 1.7E-05 57.6 70.0 31 1286-1316 867-897 (961)
68 KOG0612 Rho-associated, coiled 97.4 1.3 2.9E-05 59.7 49.1 9 258-266 80-88 (1317)
69 PF05622 HOOK: HOOK protein; 97.4 4.3E-05 9.4E-10 102.8 0.0 41 763-803 263-303 (713)
70 PF06160 EzrA: Septation ring 97.3 1.3 2.8E-05 58.2 57.3 89 694-787 198-291 (560)
71 KOG4677 Golgi integral membran 97.2 0.063 1.4E-06 63.8 23.8 46 1792-1837 502-547 (554)
72 KOG0995 Centromere-associated 97.2 1.2 2.6E-05 55.8 47.3 32 1147-1178 536-567 (581)
73 KOG0978 E3 ubiquitin ligase in 97.2 1.6 3.5E-05 56.8 75.0 94 1070-1163 525-618 (698)
74 PF09726 Macoilin: Transmembra 97.1 0.35 7.7E-06 64.2 32.4 59 862-920 422-480 (697)
75 KOG0018 Structural maintenance 97.0 2.5 5.3E-05 56.6 76.2 71 950-1020 684-754 (1141)
76 COG1340 Uncharacterized archae 97.0 1.1 2.4E-05 52.3 38.3 44 1092-1135 202-245 (294)
77 KOG0995 Centromere-associated 97.0 1.9 4.1E-05 54.1 47.4 8 636-643 105-112 (581)
78 KOG0946 ER-Golgi vesicle-tethe 96.9 1.2 2.7E-05 57.3 32.3 70 191-264 141-221 (970)
79 KOG0946 ER-Golgi vesicle-tethe 96.9 2.2 4.7E-05 55.2 34.4 48 688-735 669-716 (970)
80 KOG0978 E3 ubiquitin ligase in 96.8 3.1 6.7E-05 54.3 73.5 117 1034-1150 503-619 (698)
81 TIGR00618 sbcc exonuclease Sbc 96.8 5.6 0.00012 56.8 90.8 66 241-306 127-206 (1042)
82 PF14915 CCDC144C: CCDC144C pr 96.8 1.6 3.5E-05 50.5 41.0 79 942-1020 56-134 (305)
83 PF05622 HOOK: HOOK protein; 96.7 0.00036 7.8E-09 94.1 0.0 22 759-780 245-266 (713)
84 PF05667 DUF812: Protein of un 96.7 3 6.4E-05 54.6 34.9 27 935-961 491-517 (594)
85 KOG4673 Transcription factor T 96.7 3.1 6.7E-05 52.6 67.0 44 1446-1489 870-913 (961)
86 PF15070 GOLGA2L5: Putative go 96.7 4.2 9E-05 53.6 51.7 57 535-591 4-60 (617)
87 COG4372 Uncharacterized protei 96.6 2.4 5.2E-05 50.2 34.2 90 888-977 76-165 (499)
88 PF09728 Taxilin: Myosin-like 96.4 3.7 8.1E-05 49.5 43.9 49 841-889 19-67 (309)
89 COG1579 Zn-ribbon protein, pos 96.3 1 2.2E-05 51.4 23.7 23 1054-1076 51-73 (239)
90 COG1579 Zn-ribbon protein, pos 96.2 1.2 2.6E-05 50.9 23.8 8 1148-1155 165-172 (239)
91 PF05911 DUF869: Plant protein 96.2 8.4 0.00018 51.8 58.9 53 1068-1120 257-309 (769)
92 KOG4593 Mitotic checkpoint pro 96.0 7.5 0.00016 50.1 63.8 21 1258-1278 557-577 (716)
93 PF15070 GOLGA2L5: Putative go 95.9 9.5 0.00021 50.3 54.9 11 1285-1295 576-586 (617)
94 PF12718 Tropomyosin_1: Tropom 95.9 1.3 2.9E-05 46.9 20.9 32 986-1017 103-134 (143)
95 PF12718 Tropomyosin_1: Tropom 95.8 1.8 3.9E-05 46.0 21.4 35 978-1012 88-122 (143)
96 KOG1029 Endocytic adaptor prot 95.6 11 0.00024 48.7 37.4 49 1127-1175 530-578 (1118)
97 PF14915 CCDC144C: CCDC144C pr 95.5 6.6 0.00014 45.7 43.5 13 946-958 88-100 (305)
98 PF04849 HAP1_N: HAP1 N-termin 95.5 7.2 0.00016 46.2 28.0 84 1046-1129 204-287 (306)
99 PF05667 DUF812: Protein of un 95.5 13 0.00028 48.9 38.1 12 1138-1149 577-588 (594)
100 KOG1003 Actin filament-coating 95.3 5.6 0.00012 43.4 27.9 17 872-888 11-27 (205)
101 COG5185 HEC1 Protein involved 95.2 11 0.00023 46.1 42.0 32 1149-1180 579-610 (622)
102 PRK09039 hypothetical protein; 95.1 3 6.5E-05 51.2 23.2 18 1000-1017 48-65 (343)
103 COG4942 Membrane-bound metallo 94.9 14 0.00029 45.8 33.0 62 711-786 38-99 (420)
104 TIGR03185 DNA_S_dndD DNA sulfu 94.8 23 0.00049 47.9 44.2 81 688-771 207-287 (650)
105 PF10473 CENP-F_leu_zip: Leuci 94.7 6.5 0.00014 41.3 21.3 63 920-982 30-92 (140)
106 PRK09039 hypothetical protein; 94.3 8.8 0.00019 47.2 24.5 9 1035-1043 191-199 (343)
107 PF05911 DUF869: Plant protein 94.2 30 0.00065 46.7 65.3 80 866-945 597-676 (769)
108 KOG0980 Actin-binding protein 94.1 29 0.00063 46.1 34.7 49 1086-1134 469-517 (980)
109 PF04849 HAP1_N: HAP1 N-termin 94.0 17 0.00036 43.2 28.2 90 854-943 202-291 (306)
110 KOG0612 Rho-associated, coiled 94.0 36 0.00077 47.0 64.9 18 1728-1745 1283-1300(1317)
111 PF09728 Taxilin: Myosin-like 94.0 19 0.0004 43.7 42.3 61 1095-1155 214-274 (309)
112 PF13514 AAA_27: AAA domain 93.9 47 0.001 48.0 103.4 123 404-540 176-298 (1111)
113 KOG0980 Actin-binding protein 93.8 32 0.00069 45.7 35.1 19 1334-1352 751-769 (980)
114 PF09789 DUF2353: Uncharacteri 93.3 23 0.0005 42.5 26.2 32 864-895 78-109 (319)
115 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.3 11 0.00023 39.7 18.1 57 1129-1185 63-119 (132)
116 PF09730 BicD: Microtubule-ass 92.0 56 0.0012 43.7 72.4 53 953-1005 644-696 (717)
117 KOG4593 Mitotic checkpoint pro 91.8 52 0.0011 42.9 67.2 20 661-680 57-76 (716)
118 COG4477 EzrA Negative regulato 91.5 48 0.001 41.9 53.1 48 749-796 160-219 (570)
119 PF05010 TACC: Transforming ac 91.5 29 0.00062 39.3 31.3 16 1033-1048 142-157 (207)
120 PF15619 Lebercilin: Ciliary p 91.2 30 0.00065 38.9 26.3 22 888-909 14-35 (194)
121 PF05010 TACC: Transforming ac 91.1 31 0.00067 39.0 31.5 20 1116-1135 166-185 (207)
122 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.8 24 0.00052 37.1 19.3 86 691-776 4-89 (132)
123 COG3883 Uncharacterized protei 90.5 41 0.00088 39.3 28.0 12 974-985 77-88 (265)
124 PF10481 CENP-F_N: Cenp-F N-te 89.9 24 0.00052 40.5 18.4 68 742-812 63-130 (307)
125 PF10481 CENP-F_N: Cenp-F N-te 89.2 40 0.00087 38.8 19.5 32 397-428 97-128 (307)
126 smart00787 Spc7 Spc7 kinetocho 89.2 33 0.00071 41.6 20.6 79 375-453 205-284 (312)
127 KOG0963 Transcription factor/C 88.8 85 0.0018 40.6 49.5 11 1258-1268 483-493 (629)
128 PF08614 ATG16: Autophagy prot 87.8 6.1 0.00013 44.5 12.6 8 1142-1149 161-168 (194)
129 KOG0999 Microtubule-associated 87.7 87 0.0019 39.4 73.9 69 361-436 9-77 (772)
130 PF08172 CASP_C: CASP C termin 87.7 0.23 5E-06 57.4 1.3 59 1775-1835 178-236 (248)
131 PF06818 Fez1: Fez1; InterPro 86.8 58 0.0013 36.4 20.5 16 999-1014 11-26 (202)
132 PF13514 AAA_27: AAA domain 86.6 1.9E+02 0.004 42.1 99.2 57 288-351 151-207 (1111)
133 KOG1899 LAR transmembrane tyro 86.4 63 0.0014 41.2 20.5 93 979-1072 120-212 (861)
134 PF07111 HCR: Alpha helical co 85.3 1.4E+02 0.003 39.4 75.7 110 1034-1153 306-415 (739)
135 PF08317 Spc7: Spc7 kinetochor 85.1 1E+02 0.0022 37.8 29.9 15 856-870 154-168 (325)
136 PRK11281 hypothetical protein; 85.0 2E+02 0.0044 41.0 39.4 47 1115-1161 289-335 (1113)
137 PF10498 IFT57: Intra-flagella 84.3 46 0.00099 41.2 18.4 36 1072-1107 283-318 (359)
138 PF08317 Spc7: Spc7 kinetochor 84.2 1.1E+02 0.0024 37.4 30.7 25 762-786 70-94 (325)
139 TIGR03007 pepcterm_ChnLen poly 84.0 1.3E+02 0.0029 39.3 24.2 19 851-869 168-186 (498)
140 PF13851 GAS: Growth-arrest sp 83.8 84 0.0018 35.6 29.3 27 1064-1090 102-128 (201)
141 PF12325 TMF_TATA_bd: TATA ele 83.5 39 0.00086 34.7 14.6 90 335-428 19-108 (120)
142 TIGR01843 type_I_hlyD type I s 83.4 1.4E+02 0.003 37.9 24.8 18 1074-1091 251-268 (423)
143 COG5185 HEC1 Protein involved 83.3 1.3E+02 0.0028 37.4 43.3 20 757-776 268-287 (622)
144 PF09755 DUF2046: Uncharacteri 83.0 1.1E+02 0.0024 36.5 37.1 32 925-956 31-62 (310)
145 PF12325 TMF_TATA_bd: TATA ele 82.8 54 0.0012 33.8 15.3 34 1064-1097 25-58 (120)
146 PF08614 ATG16: Autophagy prot 82.8 16 0.00036 41.1 13.0 45 1106-1150 139-183 (194)
147 KOG4809 Rab6 GTPase-interactin 82.8 1.5E+02 0.0032 37.7 35.5 41 979-1019 361-401 (654)
148 KOG0999 Microtubule-associated 82.2 1.5E+02 0.0033 37.5 78.9 39 746-784 43-81 (772)
149 TIGR01005 eps_transp_fam exopo 81.8 1.2E+02 0.0025 42.1 23.4 16 874-889 196-211 (754)
150 PF15066 CAGE1: Cancer-associa 81.5 1.5E+02 0.0033 36.9 30.0 7 947-953 395-401 (527)
151 PF05384 DegS: Sensor protein 81.4 85 0.0018 34.0 22.5 43 975-1017 25-67 (159)
152 KOG0249 LAR-interacting protei 81.0 1.7E+02 0.0036 38.4 21.4 25 1778-1802 874-898 (916)
153 TIGR01005 eps_transp_fam exopo 80.7 1.5E+02 0.0033 40.9 24.0 23 849-871 199-221 (754)
154 KOG4360 Uncharacterized coiled 79.7 1E+02 0.0022 38.8 18.4 61 852-912 199-259 (596)
155 PF13851 GAS: Growth-arrest sp 78.8 1.2E+02 0.0027 34.3 28.9 11 1160-1170 157-167 (201)
156 PF10146 zf-C4H2: Zinc finger- 78.6 72 0.0016 36.8 16.2 11 940-950 58-68 (230)
157 PRK15422 septal ring assembly 78.6 35 0.00077 31.8 10.8 67 1047-1113 10-76 (79)
158 PF13870 DUF4201: Domain of un 78.5 1.1E+02 0.0025 33.8 22.9 115 320-434 8-123 (177)
159 KOG1853 LIS1-interacting prote 78.4 1.3E+02 0.0028 34.3 21.7 120 333-455 53-179 (333)
160 PF10498 IFT57: Intra-flagella 77.8 81 0.0018 39.0 17.4 62 1138-1203 286-347 (359)
161 KOG4360 Uncharacterized coiled 77.8 1.5E+02 0.0033 37.3 19.1 50 1049-1098 206-255 (596)
162 KOG2991 Splicing regulator [RN 77.0 1.4E+02 0.0031 34.0 24.9 16 1049-1064 185-200 (330)
163 PF00769 ERM: Ezrin/radixin/mo 76.4 1.4E+02 0.0031 34.9 18.3 35 1116-1150 80-114 (246)
164 KOG4809 Rab6 GTPase-interactin 74.8 2.5E+02 0.0054 35.8 44.6 37 1087-1123 518-554 (654)
165 PF00769 ERM: Ezrin/radixin/mo 74.0 1.7E+02 0.0037 34.4 18.1 31 1033-1063 11-41 (246)
166 PF07111 HCR: Alpha helical co 74.0 3E+02 0.0065 36.4 77.0 18 1002-1019 475-492 (739)
167 PF10186 Atg14: UV radiation r 73.8 2.1E+02 0.0045 34.4 20.2 15 1324-1338 256-270 (302)
168 KOG0971 Microtubule-associated 73.8 3.3E+02 0.0072 36.8 83.8 79 528-610 276-354 (1243)
169 PF05276 SH3BP5: SH3 domain-bi 73.6 1.8E+02 0.004 33.7 29.0 66 928-993 142-207 (239)
170 KOG0804 Cytoplasmic Zn-finger 73.5 1.4E+02 0.0031 37.1 17.2 11 635-645 177-187 (493)
171 KOG1853 LIS1-interacting prote 71.2 1.9E+02 0.0042 32.9 23.7 60 1057-1116 93-152 (333)
172 KOG0249 LAR-interacting protei 71.1 3.3E+02 0.0071 36.0 20.2 26 1622-1647 770-795 (916)
173 PF09755 DUF2046: Uncharacteri 70.8 2.4E+02 0.0052 33.9 38.0 14 1093-1106 232-245 (310)
174 KOG1899 LAR transmembrane tyro 70.6 3.2E+02 0.007 35.3 21.9 12 1775-1786 849-860 (861)
175 PF04111 APG6: Autophagy prote 70.6 56 0.0012 39.8 13.6 41 396-436 93-133 (314)
176 PF05384 DegS: Sensor protein 70.1 1.7E+02 0.0037 31.8 22.7 46 865-910 27-72 (159)
177 smart00787 Spc7 Spc7 kinetocho 69.6 2.7E+02 0.0058 33.9 30.3 25 762-786 65-89 (312)
178 PRK10884 SH3 domain-containing 69.1 33 0.00071 38.9 10.4 81 1257-1337 90-170 (206)
179 PF06005 DUF904: Protein of un 69.0 82 0.0018 29.4 11.0 49 1064-1112 20-68 (72)
180 PRK15422 septal ring assembly 68.9 90 0.0019 29.3 10.9 41 1115-1155 36-76 (79)
181 COG3074 Uncharacterized protei 67.7 96 0.0021 28.1 10.4 60 1052-1111 15-74 (79)
182 KOG0804 Cytoplasmic Zn-finger 65.4 2.4E+02 0.0052 35.2 16.8 32 1144-1175 415-446 (493)
183 PF06785 UPF0242: Uncharacteri 63.9 3.2E+02 0.0069 32.7 20.2 62 1038-1099 110-171 (401)
184 KOG0979 Structural maintenance 63.9 5.6E+02 0.012 35.5 66.3 14 1240-1253 956-969 (1072)
185 PF04582 Reo_sigmaC: Reovirus 63.0 14 0.00029 44.3 6.1 6 1000-1005 142-147 (326)
186 COG2433 Uncharacterized conser 63.0 1.3E+02 0.0028 38.9 14.6 86 691-787 423-508 (652)
187 PF08647 BRE1: BRE1 E3 ubiquit 63.0 1.6E+02 0.0035 29.1 13.0 36 945-980 27-62 (96)
188 PRK11281 hypothetical protein; 62.8 6.7E+02 0.015 36.1 44.8 8 1755-1762 996-1003(1113)
189 KOG1937 Uncharacterized conser 60.2 4.3E+02 0.0094 33.0 36.6 7 637-643 38-44 (521)
190 PF06818 Fez1: Fez1; InterPro 59.4 3E+02 0.0066 31.0 23.1 37 852-888 11-47 (202)
191 COG4026 Uncharacterized protei 59.3 1E+02 0.0022 34.4 11.2 35 1115-1149 167-201 (290)
192 PF06005 DUF904: Protein of un 59.0 1.6E+02 0.0034 27.6 10.9 27 1127-1153 41-67 (72)
193 COG2433 Uncharacterized conser 57.3 1.4E+02 0.003 38.6 13.5 37 750-786 426-462 (652)
194 PF15294 Leu_zip: Leucine zipp 56.7 3.8E+02 0.0082 31.9 16.1 45 687-731 129-173 (278)
195 KOG4807 F-actin binding protei 56.1 4.5E+02 0.0097 31.9 25.9 12 1034-1045 363-374 (593)
196 PF09787 Golgin_A5: Golgin sub 54.9 6.2E+02 0.013 33.2 38.9 22 1106-1127 408-429 (511)
197 COG3074 Uncharacterized protei 54.4 1.7E+02 0.0037 26.6 10.6 38 1116-1153 37-74 (79)
198 PF09738 DUF2051: Double stran 54.3 1.6E+02 0.0034 35.6 13.0 81 689-783 83-163 (302)
199 PRK10884 SH3 domain-containing 54.3 1.6E+02 0.0036 33.4 12.5 20 579-598 137-156 (206)
200 PF15290 Syntaphilin: Golgi-lo 51.9 4.1E+02 0.0089 31.2 14.8 68 761-833 69-138 (305)
201 PRK10929 putative mechanosensi 51.5 9.7E+02 0.021 34.5 45.4 6 1797-1802 1033-1038(1109)
202 PRK10869 recombination and rep 49.5 7.7E+02 0.017 32.7 27.2 9 1168-1176 378-386 (553)
203 KOG1937 Uncharacterized conser 46.5 7E+02 0.015 31.4 35.6 32 844-875 389-420 (521)
204 PF15450 DUF4631: Domain of un 45.9 7.8E+02 0.017 31.7 64.0 20 810-829 53-72 (531)
205 PF15397 DUF4618: Domain of un 45.6 5.7E+02 0.012 30.1 28.6 211 804-1014 5-223 (258)
206 PF12795 MscS_porin: Mechanose 44.2 5.8E+02 0.013 29.8 23.7 29 841-869 82-110 (240)
207 PRK03947 prefoldin subunit alp 42.7 4.3E+02 0.0094 27.9 14.5 39 388-426 94-132 (140)
208 TIGR01000 bacteriocin_acc bact 41.2 9E+02 0.02 31.2 23.7 21 1030-1050 294-314 (457)
209 PF10267 Tmemb_cc2: Predicted 41.2 5.1E+02 0.011 32.5 14.9 43 373-415 275-318 (395)
210 PF10212 TTKRSYEDQ: Predicted 40.6 9.4E+02 0.02 31.2 20.3 37 527-563 113-149 (518)
211 PF14073 Cep57_CLD: Centrosome 40.6 5.5E+02 0.012 28.4 22.7 32 854-885 60-91 (178)
212 PF05278 PEARLI-4: Arabidopsis 40.0 7E+02 0.015 29.5 15.6 32 753-784 200-231 (269)
213 KOG0972 Huntingtin interacting 39.3 7E+02 0.015 29.4 14.7 21 1177-1197 328-348 (384)
214 PF10211 Ax_dynein_light: Axon 38.5 6.2E+02 0.013 28.5 15.5 14 634-647 62-75 (189)
215 PF07106 TBPIP: Tat binding pr 38.2 3.3E+02 0.0072 29.8 11.7 62 320-381 74-137 (169)
216 PF09738 DUF2051: Double stran 38.0 6E+02 0.013 30.8 14.4 10 1140-1149 284-293 (302)
217 PF13166 AAA_13: AAA domain 37.1 1.3E+03 0.028 31.7 28.5 10 1298-1307 637-646 (712)
218 PRK03947 prefoldin subunit alp 36.1 5.5E+02 0.012 27.1 13.7 29 1119-1147 95-123 (140)
219 PF05266 DUF724: Protein of un 34.0 7.2E+02 0.016 28.0 13.5 7 721-727 134-140 (190)
220 TIGR02449 conserved hypothetic 32.7 3.1E+02 0.0067 25.1 8.1 49 688-736 5-53 (65)
221 PF08581 Tup_N: Tup N-terminal 32.2 4.3E+02 0.0094 25.2 9.5 69 1552-1620 6-75 (79)
222 PF09727 CortBP2: Cortactin-bi 32.0 7.8E+02 0.017 27.7 14.0 144 196-376 22-171 (192)
223 KOG1850 Myosin-like coiled-coi 31.3 9.9E+02 0.021 28.7 45.3 67 1072-1138 239-305 (391)
224 KOG0288 WD40 repeat protein Ti 30.2 1.2E+03 0.025 29.2 17.0 57 322-378 10-66 (459)
225 PF10234 Cluap1: Clusterin-ass 30.1 1E+03 0.022 28.4 19.1 48 1064-1111 171-218 (267)
226 PF03962 Mnd1: Mnd1 family; I 30.0 5.8E+02 0.013 28.6 12.0 92 360-452 62-154 (188)
227 KOG1656 Protein involved in gl 29.9 8.4E+02 0.018 27.4 14.1 60 1640-1716 81-152 (221)
228 PF12777 MT: Microtubule-bindi 29.0 1.2E+03 0.026 28.9 27.5 63 706-775 230-292 (344)
229 PF08826 DMPK_coil: DMPK coile 28.3 4.5E+02 0.0098 23.8 10.0 12 1085-1096 41-52 (61)
230 PF01920 Prefoldin_2: Prefoldi 27.4 6.1E+02 0.013 25.0 12.3 31 1123-1153 67-97 (106)
231 PF15254 CCDC14: Coiled-coil d 26.5 1.8E+03 0.038 30.1 22.0 166 930-1106 389-559 (861)
232 TIGR02338 gimC_beta prefoldin, 26.3 6.9E+02 0.015 25.3 12.9 15 1121-1135 70-84 (110)
233 KOG1962 B-cell receptor-associ 25.8 6.3E+02 0.014 28.9 11.0 27 404-430 181-207 (216)
234 PF14073 Cep57_CLD: Centrosome 25.4 9.6E+02 0.021 26.6 22.6 29 1036-1064 122-150 (178)
235 PLN03188 kinesin-12 family pro 25.2 2.3E+03 0.05 31.0 37.7 59 196-269 882-940 (1320)
236 PF07794 DUF1633: Protein of u 25.1 1.5E+03 0.032 28.7 15.0 44 1136-1180 678-721 (790)
237 COG1382 GimC Prefoldin, chaper 25.0 7.8E+02 0.017 25.4 13.0 33 1121-1153 73-105 (119)
238 PF10212 TTKRSYEDQ: Predicted 24.9 1.6E+03 0.035 29.1 23.4 21 890-910 306-326 (518)
239 PRK04406 hypothetical protein; 23.4 4E+02 0.0087 25.1 7.6 41 1427-1467 10-50 (75)
240 PF14992 TMCO5: TMCO5 family 23.3 1.3E+03 0.029 27.5 18.7 17 863-879 121-137 (280)
241 PF10805 DUF2730: Protein of u 22.3 7.2E+02 0.016 25.1 9.9 53 327-379 37-91 (106)
242 PF04859 DUF641: Plant protein 22.3 2.1E+02 0.0045 30.1 6.1 49 1556-1604 79-127 (131)
243 PRK09841 cryptic autophosphory 22.2 2.2E+03 0.047 29.6 18.1 32 776-807 348-379 (726)
244 PF10267 Tmemb_cc2: Predicted 22.1 1.7E+03 0.036 28.2 16.6 43 1089-1131 275-318 (395)
245 PF15450 DUF4631: Domain of un 22.0 1.8E+03 0.039 28.6 61.2 32 1141-1172 414-445 (531)
246 PF02994 Transposase_22: L1 tr 21.8 1.5E+02 0.0032 37.2 5.9 7 274-280 45-51 (370)
247 PF10234 Cluap1: Clusterin-ass 21.6 1.4E+03 0.03 27.2 19.3 61 947-1007 195-255 (267)
248 KOG4302 Microtubule-associated 21.4 2.1E+03 0.046 29.2 37.9 47 843-889 225-271 (660)
249 PF10205 KLRAQ: Predicted coil 21.1 8.5E+02 0.019 24.5 11.6 22 948-969 32-53 (102)
250 PF07989 Microtub_assoc: Micro 20.7 7.2E+02 0.016 23.5 9.1 69 357-431 4-72 (75)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.2e-24 Score=287.47 Aligned_cols=505 Identities=18% Similarity=0.205 Sum_probs=379.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 931 HIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQV 1010 (1837)
Q Consensus 931 ~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~l 1010 (1837)
..+...+.+.......+......++.++..+..++.........++...+.++..+.+++.++.+....+.++-.....+
T Consensus 1192 ~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1192 AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555556666666666666666677666666666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000221 1011 EANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLEN 1090 (1837)
Q Consensus 1011 e~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~ 1090 (1837)
..++..+...+ ......+..+......+...+..++.++..-......+...+..++.++..+..+++.....+..+..
T Consensus 1272 ~~E~~~l~~~l-ee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r 1350 (1930)
T KOG0161|consen 1272 QNENEELSRQL-EEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELER 1350 (1930)
T ss_pred hhhHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665544 11122333333333444444444555554444555556666777888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000221 1091 ELQMLKDEAGSQAVKLADAHT-TIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVEL 1169 (1837)
Q Consensus 1091 eL~~l~~El~~~~~kl~e~~~-~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL 1169 (1837)
.+.....++..|..+++.... ....+++....+..+++.++..+. ........+++.+.+|
T Consensus 1351 ~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e------------------~~~~~~~~Lek~k~~l 1412 (1930)
T KOG0161|consen 1351 KLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE------------------AANAKNASLEKAKNRL 1412 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Confidence 999999999998888875444 366777777777766666655554 4445566777788888
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhcccCCcccccCCCCcccccccccccccccccccccc
Q 000221 1170 IGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVL 1249 (1837)
Q Consensus 1170 ~~~ledlq~~~~d~~~~~~~~~~~~~k~~~l~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~el~~~~~~~~ 1249 (1837)
+++++| ...|.++.....+.++++++.|+.. +++|+.... .... +++.++.+.+
T Consensus 1413 ~~el~d---~~~d~~~~~~~~~~le~k~k~f~k~---l~e~k~~~e---~l~~-----------------Eld~aq~e~r 1466 (1930)
T KOG0161|consen 1413 QQELED---LQLDLERSRAAVAALEKKQKRFEKL---LAEWKKKLE---KLQA-----------------ELDAAQRELR 1466 (1930)
T ss_pred HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHH-----------------HHHHHHHHHH
Confidence 888888 5667788888999999999999988 799997654 1110 3444444444
Q ss_pred chhh-------hhHHHHHHHHHHHHhhhhHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhH
Q 000221 1250 DADD-------ITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCK 1322 (1837)
Q Consensus 1250 ~~~~-------~~~~~~~~~e~~~~~~~~L~~~~~~~~~~idq~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~~l~~~~ 1322 (1837)
..++ .++++.+.++.+.++++.++.++.++..++++....+|. ++...+.+...+..|+..|..+.+.+
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~e----lek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHE----LEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333 466777799999999999999999999998877776666 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhhcccCCCCCCCccCCCCccccccccccchHHHHH
Q 000221 1323 QEHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAA 1402 (1837)
Q Consensus 1323 ~~~ee~l~~le~~l~~l~~~~~~~~~~le~el~~~l~~l~~~~eLe~~~~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~ 1402 (1837)
+..+....+++.++..+..+ +++.+.. + ..++...+
T Consensus 1543 e~eE~~~lr~~~~~~~~r~e-------~er~l~e----------------------------------k---~Ee~E~~r 1578 (1930)
T KOG0161|consen 1543 EAEEDKKLRLQLELQQLRSE-------IERRLQE----------------------------------K---DEEIEELR 1578 (1930)
T ss_pred hhhhhHHHHHHHHHHHHHHH-------HHHHHHh----------------------------------h---hHHHHHHH
Confidence 99999999988888888777 5443322 1 11245567
Q ss_pred HHHHHhhhhhhHHHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-
Q 000221 1403 ENLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVED- 1481 (1837)
Q Consensus 1403 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~- 1481 (1837)
+.+....+.+++......+.+..+.+..++|+.++++++.+++++......+++.++.++..+++++..+++.....++
T Consensus 1579 k~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~ 1658 (1930)
T KOG0161|consen 1579 KNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREEL 1658 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888887777888899999999999999999999999999999999999999999999999999999988874
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHhhhccc
Q 000221 1482 ---LEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGIE 1531 (1837)
Q Consensus 1482 ---~~~leekl~~~~~ei~~l~~~l~~~e~e~e~~~~~~~eleel~~ki~~l~ 1531 (1837)
+...+.++....+++..++..+..+.+ .......++.++.+.++.+.
T Consensus 1659 ~~q~~~aerr~~~l~~E~eeL~~~l~~~~R---arr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1659 LEQLAEAERRLAALQAELEELREKLEALER---ARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHh
Confidence 456678999999999999999998888 35566677888888887744
No 2
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=5.9e-23 Score=257.93 Aligned_cols=544 Identities=17% Similarity=0.191 Sum_probs=289.5
Q ss_pred ccccc-----ccc-----cccccchhhcc--chHHHHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHH
Q 000221 262 YQGEL-----MDS-----SISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLN 329 (1837)
Q Consensus 262 ~~~~~-----~~~-----~~~g~le~lE~--~t~~kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~ 329 (1837)
=||++ |+| +++|+|||||| ||+.|.....++..++..|...+..+ .++++.+..+...
T Consensus 230 LQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek----------~~~~k~~e~ek~~ 299 (1293)
T KOG0996|consen 230 LQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEK----------ENRVKLVEKEKKA 299 (1293)
T ss_pred ehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHH----------HHHHHHHHHHHHH
Confidence 35665 666 38999999999 99999999999999999998877666 4556667766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-HHhhhHHHHHHHHHH
Q 000221 330 LKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLA-VTKGKALVQQRDSLK 408 (1837)
Q Consensus 330 lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~-~~~~~~L~~~~~~Lk 408 (1837)
+..-. ...+..|..+++-+.......+-.+......+......+..+.+.+....+++... ..........+..++
T Consensus 300 lE~~k---~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~ 376 (1293)
T KOG0996|consen 300 LEGPK---NEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIK 376 (1293)
T ss_pred HhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 54332 23356666666666555555555555555555555555555555555444444422 222222222333333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHhhcCC---cch
Q 000221 409 QSLADKTIELEKCLAELQEKSSALQAAE-LSKEEFIKTENLVASLQETLQQSNLMLE-------KSEEVLAQID---IPE 477 (1837)
Q Consensus 409 ~~l~e~~~el~~~~~ele~~~~~le~~e-~l~~eL~~~r~~~~~l~~~~~ek~~~l~-------~lee~~~~~~---~~~ 477 (1837)
.......++...+..++..+..+....+ .+..-+++.++..+.++....++..+-. .+.....+++ ...
T Consensus 377 e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~ 456 (1293)
T KOG0996|consen 377 ERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELL 456 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHH
Confidence 3333333333334333333333333322 1111111111111111111111111000 0000000000 000
Q ss_pred hhhhhhHHHHHHHHH----HHHHHHhhhHhhhHhhHHhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 478 ELQSLDMVERIKWLV----SERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNR 553 (1837)
Q Consensus 478 ~~~~~el~ek~e~L~----e~~~el~~~~~el~~l~e~l~~~~l~~~~~~~ele~ei~~L~~~l~~~~~e~~~l~~el~~ 553 (1837)
....+.+.+.+..+. ..+.++...+.++.+|...+... .....-.+++...|......+......++..+..
T Consensus 457 ~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~----~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 457 EKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEA----RSELDVAESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111111111 11123344444455554443321 1222223444555544444444444444444444
Q ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh----
Q 000221 554 M-----------------KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHMVRVLL---- 612 (1837)
Q Consensus 554 ~-----------------l~~~~~ei~~L~~~l~~~~~ek~~l~~el~~l~~e~~~l~~~~~~~~~e~~~~~~~L~---- 612 (1837)
+ +.+.+.++.+.+..+..+..+-..+...+..++.+..++....+....+ +++.+.|+
T Consensus 533 ~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r~ke 611 (1293)
T KOG0996|consen 533 SSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMRLKE 611 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHH
Confidence 3 3333344444445555555555556666667777777887777777776 77777777
Q ss_pred ------------hhcCCCccchhhhhhcc--------CChhHHHHHHHHHHHhhh----h--cccCCc--------CCCh
Q 000221 613 ------------KESGTSMEDQDVASQTS--------SDPTAIISKCIGKIREQT----C--ASSDTS--------GADS 658 (1837)
Q Consensus 613 ------------dl~~i~le~~~~a~~~~--------~~~~~~~~~~~~~l~~~~----~--~l~~~~--------~~~~ 658 (1837)
||++|+ ++||+||+|+ |+++++|+.|+++|+.+. + .|+++. +.+|
T Consensus 612 sG~i~Gf~GRLGDLg~Id-~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tp 690 (1293)
T KOG0996|consen 612 SGRIPGFYGRLGDLGAID-EKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTP 690 (1293)
T ss_pred cCCCCccccccccccccc-hHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCC
Confidence 777887 8999999999 889999999999999733 2 444322 5569
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhHHhHHHHHHHHHHHH---------------------------------HH--HHHH
Q 000221 659 EMLQTMQSLLYVSYQELILCQQILEEDALVRLQLNDLSN---------------------------------KL--RVAS 703 (1837)
Q Consensus 659 E~~~rl~~~i~~l~~e~~~~~~~l~~~~~~~~el~~l~~---------------------------------el--~~l~ 703 (1837)
|.++||+++|.+.+++++.+||++.+++++...++++.+ .+ ....
T Consensus 691 envPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~ 770 (1293)
T KOG0996|consen 691 ENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSI 770 (1293)
T ss_pred CCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCcc
Confidence 999999999999999999999999999999999998840 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 704 EEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQI 783 (1837)
Q Consensus 704 ~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l 783 (1837)
.-....+..+..++..+......+..+.+++... ......+...+..++..++.+..+.+.+-..+..+..++
T Consensus 771 ~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~-------ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i 843 (1293)
T KOG0996|consen 771 RVTGVSKESVEKLERALSKMSDKARQHQEQLHEL-------EERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQI 843 (1293)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112223344455555555555555554444333 223344444444444444444444444444444444444
Q ss_pred HHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000221 784 NRLSN-------DLDCIRKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRII 832 (1837)
Q Consensus 784 ~~L~~-------~~e~~~~le~el~~l~~eleel~~~l~e~~~~l~rl~~~i~~l~ 832 (1837)
..++. ..+++..++..|..++.+++++... ..+...+..+++.|..+.
T Consensus 844 ~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~-~~Kk~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 844 AELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEK-AAKKARIKELQNKIDEIG 898 (1293)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhh
Confidence 44433 3345566666677777777776522 122456666666666544
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.96 E-value=3.2e-17 Score=224.04 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 859 TKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFA 938 (1837)
Q Consensus 859 ~l~~~e~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~~le~~~~~le~elekl~~el~~~~~kl~ 938 (1837)
.+..+......+..++..+...+..-......+...+..++..+..+....+.-...+..+..++.++..+...+..++.
T Consensus 1288 ~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1288 KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444445555555556666666666666556666677777777777777777666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 939 EACAS-RKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEA 1012 (1837)
Q Consensus 939 e~~~~-i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~ 1012 (1837)
..... ...++.....+...+..+...++.+......++.-...+..++......+.........++........
T Consensus 1368 ~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k 1442 (1930)
T KOG0161|consen 1368 EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEK 1442 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 566666666666666666666666666666666655555555555555554444444444443333333
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2e-19 Score=253.95 Aligned_cols=277 Identities=11% Similarity=0.091 Sum_probs=193.5
Q ss_pred hhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1423 STVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLYDR 1502 (1837)
Q Consensus 1423 ~~~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~~~~leekl~~~~~ei~~l~~~ 1502 (1837)
...+...+..++..+..+...++.++.+.+..+..+..|+..+..+......+...+....+++..+..+..++..+...
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555666667778888888888888988888888888888888889999999999999999999999
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHhhhcccccccccc---CCcccchHHHHHHHHHHHHH------------HHhHHHHHH
Q 000221 1503 LSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAESA---GDEEPESSAIVKKLFSIINS------------ATKLPHQID 1567 (1837)
Q Consensus 1503 l~~~e~e~e~~~~~~~eleel~~ki~~l~~~~~e~~---~~~e~~~~~~~~kL~~~~~~------------~~~l~~~i~ 1567 (1837)
+..++.+++.+......+..-...+.. ...... ......+...+..|..+... +..+...+.
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~ 980 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELIS---SKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELN 980 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998888766443333222222222111 211111 12222222233333333222 223555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHH--HHHHhhHHHHHHhhhcCchhhhhh----------
Q 000221 1568 LLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEF--AEFTFGLEKIVNMLESNEFVVNQK---------- 1635 (1837)
Q Consensus 1568 ~l~~ei~~lq~~l~~~~~ei~~L~k~l~~~~~~k~~l~~~~~el--~el~~~le~~I~~L~~~~A~~~~~---------- 1635 (1837)
.+...+..++.++..++.+|..+++++.++...++++.++...+ ..-...+...|..|+...+..++.
T Consensus 981 ~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~ 1060 (1311)
T TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLE 1060 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 66778888999999999999999999999998888887772222 222233566676666655443332
Q ss_pred ---------hccccchHHHHHHHHHHHHHHH-----HhhHHHHHHhhchhhhhhhhhhhhhhhHHHHHHH----Hhcccc
Q 000221 1636 ---------SSGSKGLLAVLEKQIMTLHSDA-----ENSKSKVQELGNKLLESQKEVDDLTTKVDLLEES----LHGRRD 1697 (1837)
Q Consensus 1636 ---------~a~~~gel~~Le~qi~~l~~El-----~d~~~~~~~~~ikLqt~~~~~~dL~~y~kaLd~a----i~~~~~ 1697 (1837)
.+++.|.+++++.+|..+..+| +++...|++.|++++|++++++||++|++|||+| |..|+.
T Consensus 1061 ~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 1140 (1311)
T TIGR00606 1061 ENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKME 1140 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1578899999999999999999 4888899999999999999999999999999999 566777
Q ss_pred Chhhh
Q 000221 1698 QPEIV 1702 (1837)
Q Consensus 1698 ~~~~~ 1702 (1837)
.++-+
T Consensus 1141 ~~n~~ 1145 (1311)
T TIGR00606 1141 EINKI 1145 (1311)
T ss_pred HHHHH
Confidence 76644
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.94 E-value=3.7e-13 Score=180.99 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHH
Q 000221 327 LLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDS 406 (1837)
Q Consensus 327 le~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~ 406 (1837)
+..+.+++..+..++..+..+...++..+..+...+..+..+...+...+..+.+....+..-....+...+.|......
T Consensus 54 ~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~ 133 (1822)
T KOG4674|consen 54 LSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLER 133 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666666666666666666666666666666666666666665555555555555444455555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHhhcCCcchhhhhhhHH
Q 000221 407 LKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIK-TENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLDMV 485 (1837)
Q Consensus 407 Lk~~l~e~~~el~~~~~ele~~~~~le~~e~l~~eL~~-~r~~~~~l~~~~~ek~~~l~~lee~~~~~~~~~~~~~~el~ 485 (1837)
.+.+|+.+...+..+..++......+-.++....+... .-.....+..+.+++..+.....- ..+++.
T Consensus 134 ~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~w-----------L~~eL~ 202 (1822)
T KOG4674|consen 134 QKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKW-----------LSRELS 202 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHH
Confidence 55566666666666666666665555555533322211 111112233333333333322221 223444
Q ss_pred HHHHHHHHHHHH----HhhhHhhhHhhHHhhccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 486 ERIKWLVSERHE----LKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNE 561 (1837)
Q Consensus 486 ek~e~L~e~~~e----l~~~~~el~~l~e~l~~~~l~~~~~~~ele~ei~~L~~~l~~~~~e~~~l~~el~~~l~~~~~e 561 (1837)
.+.+.+...+.+ ...+...|..+... +.++...+.||......+..-+..+..++..+.+.....
T Consensus 203 ~~~ekll~~~re~s~~~~~L~~~L~~~~~~-----------~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~ 271 (1822)
T KOG4674|consen 203 KVNEKLLSLRREHSIEVEQLEEKLSDLKES-----------LAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESS 271 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444444332 23333333333332 235667777777777777777777777777774333333
Q ss_pred HHHHH
Q 000221 562 IDRLS 566 (1837)
Q Consensus 562 i~~L~ 566 (1837)
...+.
T Consensus 272 ~~kf~ 276 (1822)
T KOG4674|consen 272 EEKFE 276 (1822)
T ss_pred HHHHH
Confidence 33333
No 6
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.94 E-value=3.9e-13 Score=180.87 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHhhhhHhhhhhhhhccHH
Q 000221 1255 TSCFRKTAEGFQMRTKILTDTFEHFSVSID 1284 (1837)
Q Consensus 1255 ~~~~~~~~e~~~~~~~~L~~~~~~~~~~id 1284 (1837)
.....+...+|..+|+.|-+.|+.++....
T Consensus 1108 ~~~~~~~~~~L~~qNslLh~qie~~s~~~~ 1137 (1822)
T KOG4674|consen 1108 VNELKKRIESLEKQNSLLHDQFEELSQQSA 1137 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345777888899999999988888775533
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=6.4e-15 Score=208.57 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=50.9
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhcccccccc-cccc-cchhhcc--chHHHHHHHHHHHHHHHHHhhhhcCC
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGELMDS-SISG-KISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKP 306 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~g-~le~lE~--~t~~kAekY~el~eel~~Lei~l~~~ 306 (1837)
+....+..++|.+++.| ++++|||+|..| +.+. +-++|++ |+..|.+-|..+..-.+.+...+-..
T Consensus 134 e~~~~i~~~lGv~~~~f~~vi~~~Qge~~~~~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~~~~~~ 205 (1311)
T TIGR00606 134 EIDREMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEH 205 (1311)
T ss_pred HHHHHHHHHhCCCHHHHhhceeeCCcccccccCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778889999999999 678899999555 3333 4488988 99999888888887777776665554
No 8
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.85 E-value=2.2e-11 Score=159.62 Aligned_cols=347 Identities=15% Similarity=0.170 Sum_probs=232.1
Q ss_pred hhhhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1421 MTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKENEAKISLLY 1500 (1837)
Q Consensus 1421 ~~~~~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~~~~leekl~~~~~ei~~l~ 1500 (1837)
.+..++......++..+...+..++.++.+.....+.++.+......+......+..+++..++++++++.+..++..+.
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~ 898 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLD 898 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35556666777777777778888899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHhhhccccccccccCCcccchHHHHHHHHHHHHHHHhHHHHHHHH---------HH
Q 000221 1501 DRLSRKEQEAEGLFLSPLQIRKLVDKISGIEIPYAESAGDEEPESSAIVKKLFSIINSATKLPHQIDLL---------EH 1571 (1837)
Q Consensus 1501 ~~l~~~e~e~e~~~~~~~eleel~~ki~~l~~~~~e~~~~~e~~~~~~~~kL~~~~~~~~~l~~~i~~l---------~~ 1571 (1837)
..+..+...+........+..+...+... .- ...+...+.....+...+..|.........+ -+
T Consensus 899 s~~~e~~~~~~~~~~~l~e~~s~~e~~k~---~~----~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~ 971 (1294)
T KOG0962|consen 899 SKVKELLERIQPLKVELEEAQSEKEELKN---ER----NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIA 971 (1294)
T ss_pred HHHHhhHhhhcchhhhHHHHHHHHHHHHH---Hh----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchH
Confidence 77776655433222211111111111111 00 0011122334444555554444433333222 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHhh---HHHHHHhhhcCchhhhhh-------------
Q 000221 1572 GKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKMKIEFAEFTFG---LEKIVNMLESNEFVVNQK------------- 1635 (1837)
Q Consensus 1572 ei~~lq~~l~~~~~ei~~L~k~l~~~~~~k~~l~~~~~el~el~~~---le~~I~~L~~~~A~~~~~------------- 1635 (1837)
++..++..++.+..++......+.++...++++.++ ..++.+.+. +++.+..++.+....+..
T Consensus 972 ~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dn-l~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~ 1050 (1294)
T KOG0962|consen 972 QLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDN-LTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEER 1050 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 677788888999999999999998888888877777 333333333 555565555542222211
Q ss_pred ------hccccchHHHHHHHHHHHHHHH-----HhhHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHh----ccccChh
Q 000221 1636 ------SSGSKGLLAVLEKQIMTLHSDA-----ENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESLH----GRRDQPE 1700 (1837)
Q Consensus 1636 ------~a~~~gel~~Le~qi~~l~~El-----~d~~~~~~~~~ikLqt~~~~~~dL~~y~kaLd~ai~----~~~~~~~ 1700 (1837)
.+++.|++++++++|.++..+| ++....|+..||+++|+.+++.||++|++|||.||- .|+--.+
T Consensus 1051 ~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN 1130 (1294)
T KOG0962|consen 1051 EKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEIN 1130 (1294)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2688999999999999999999 488888999999999999999999999999999953 3332221
Q ss_pred hhhhhhhhccCCCCCCcccccccccccccCCCccccCCCchhhhccccCCCCCcceeccccccccccCccCCCcccc---
Q 000221 1701 IVQERSIFEASSLPTGSEISEVEDVMQGTLGQKTISPVPSAAHTRTMRKGSTDHLTINIDSESARLINSEETDEDKG--- 1777 (1837)
Q Consensus 1701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 1777 (1837)
- .|-++ | -+++|-...|+.-|--|++ + +-++.
T Consensus 1131 ~-------------------iI~el-------W----------~~tYrG~Did~IrIrsD~~--~-------s~~~~rsY 1165 (1294)
T KOG0962|consen 1131 R-------------------IIREL-------W----------RKTYRGTDIDYIKIRSDSV--S-------SSDKRRTY 1165 (1294)
T ss_pred H-------------------HHHHH-------H----------HhccCCCCcceEEEeeccc--c-------cccccccc
Confidence 1 11121 1 2345533334433333322 2 11222
Q ss_pred -------cccccccccccccCCCchhhhhh------ccceeecccccccCchhhHH
Q 000221 1778 -------HVFKSLNTLGLIPRQGKMVADRI------DGIWVSGGRLLMSRPGTRLG 1820 (1837)
Q Consensus 1778 -------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 1820 (1837)
-|-.-|-|.|.-.+.++.+|+.| +.|.++||-+-..-|+.+|-
T Consensus 1166 nyrVv~~kgd~eldMRGRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD 1221 (1294)
T KOG0962|consen 1166 NYRVVMVKGDTELDMRGRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLD 1221 (1294)
T ss_pred ceeEEEEechHHHHhccCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccC
Confidence 12234668888899999999877 55689999999999999774
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.84 E-value=7.8e-13 Score=185.35 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=123.5
Q ss_pred chhhccchHHHHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 275 ISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQ 354 (1837)
Q Consensus 275 le~lE~~t~~kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~e 354 (1837)
|+.|+. -...|.+|..++.++..++..+....|... .. .+..+..++..+...+..+..++.....++..++..
T Consensus 202 l~~L~~-q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~-~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (1163)
T COG1196 202 LEKLER-QAEKAERYQELKAELRELELALLLAKLKEL-RK----ELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275 (1163)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433 346799999999999999999999999865 33 488899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000221 355 AEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQA 434 (1837)
Q Consensus 355 l~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~ 434 (1837)
+..+...+...+.++..+...+..++..+....+++.........+......++..+......+.........+......
T Consensus 276 ~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 355 (1163)
T COG1196 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888887776666677777777777766666654333333333333
No 10
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.84 E-value=2.1e-22 Score=268.49 Aligned_cols=503 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 932 IQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVE 1011 (1837)
Q Consensus 932 ~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le 1011 (1837)
.+...+..+......+++....+..++..+...++.+...+..++..+..+..++..+..++.+....+.++......+.
T Consensus 135 eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~ 214 (859)
T PF01576_consen 135 ELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQ 214 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000221 1012 ANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENE 1091 (1837)
Q Consensus 1012 ~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~e 1091 (1837)
.+++.+...+. ........+......+...+..++..+..-......|...+..++.++..+..+++........+...
T Consensus 215 ~E~~eL~~qLe-e~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~q 293 (859)
T PF01576_consen 215 SENSELTRQLE-EAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQ 293 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 77776665551 11111111111111222233333333333333344455566667778888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 000221 1092 LQMLKDEAGSQAVKLADAH-TTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELI 1170 (1837)
Q Consensus 1092 L~~l~~El~~~~~kl~e~~-~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL~ 1170 (1837)
+..++.++..|..+++... .....+++...++...+..+...+. .....++.+++.+..|+
T Consensus 294 lsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le------------------~~~~~~~~LeK~k~rL~ 355 (859)
T PF01576_consen 294 LSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLE------------------EANAKVSSLEKTKKRLQ 355 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 9999999999999998533 3366777777777777666666555 45566677778888999
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhcccCCcccccCCCCccccccccccccccccccccccc
Q 000221 1171 GHLNDLQMHMKDERLLSAVKSCFERKIEGLQNMELIVEDIRIGVVGKGSAVTEGNSDVTKSFMDDIDNIEMYDNEVTVLD 1250 (1837)
Q Consensus 1171 ~~ledlq~~~~d~~~~~~~~~~~~~k~~~l~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~el~~~~~~~~~ 1250 (1837)
++++|+. .+++..+..+..++++++.|+.. +.+|+..+..-. . +++.+..+++.
T Consensus 356 ~EleDl~---~eLe~~~~~~~~LeKKqr~fDk~---l~e~k~~~~~~~---~-----------------e~d~~q~e~r~ 409 (859)
T PF01576_consen 356 GELEDLT---SELEKAQAAAAELEKKQRKFDKQ---LAEWKAKVEELQ---A-----------------ERDAAQREARE 409 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHH---H-----------------HHHHHHHHhHH
Confidence 9999944 56778888899999999999988 788887654111 0 22333333333
Q ss_pred hhh-------hhHHHHHHHHHHHHhhhhHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhHH
Q 000221 1251 ADD-------ITSCFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQ 1323 (1837)
Q Consensus 1251 ~~~-------~~~~~~~~~e~~~~~~~~L~~~~~~~~~~idq~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~~l~~~~~ 1323 (1837)
..+ .++.+...++.+.++++.|..++.++.+.++.....+|. +....+.+..++..++..|..+.+.+.
T Consensus 410 ~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e----Lek~kr~LE~e~~El~~~leE~E~~l~ 485 (859)
T PF01576_consen 410 LETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE----LEKAKRRLEQEKEELQEQLEEAEDALE 485 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 366788889999999999999999999999888877776 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhhhhhcccCCCCCCCccCCCCccccccccccchHHHHHH
Q 000221 1324 EHEEAMVMLQNDATVLLSACIDATRELQFEVKNNLLELNSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAE 1403 (1837)
Q Consensus 1324 ~~ee~l~~le~~l~~l~~~~~~~~~~le~el~~~l~~l~~~~eLe~~~~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~~ 1403 (1837)
..+..+.+++.++..+... |++++.+ |+ .++..+++
T Consensus 486 ~~E~~~lRl~~el~~~r~e-------~er~l~e----------------------------------Ke---eE~E~~Rr 521 (859)
T PF01576_consen 486 AEEQKKLRLQVELQQLRQE-------IERELQE----------------------------------KE---EEFEETRR 521 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHh----------------------------------hh---hHHHHHHH
Confidence 9999999999999988877 6664433 11 12445566
Q ss_pred HHHHhhhhhhHHHHHhhhhhhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--
Q 000221 1404 NLLFSARKAQPLAKLFEMTSTVAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVED-- 1481 (1837)
Q Consensus 1404 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~-- 1481 (1837)
.+....+.+++.+......+..+.+..++|+..++++..++++.+.....+.+.+..++.++++++..+.+.......
T Consensus 522 ~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~ 601 (859)
T PF01576_consen 522 NHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR 601 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 666667777776666777888899999999999999999999999999999999999999999999999998888774
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHhhhcc
Q 000221 1482 --LEAKEEKLKENEAKISLLYDRLSRKEQEAEGLFLSPLQIRKLVDKISGI 1530 (1837)
Q Consensus 1482 --~~~leekl~~~~~ei~~l~~~l~~~e~e~e~~~~~~~eleel~~ki~~l 1530 (1837)
+...+.++..+.+++..++..+..+.+ .......++.++...+..+
T Consensus 602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r---~rk~aE~el~e~~~~~~~l 649 (859)
T PF01576_consen 602 EQLAVSERRLRALQAELEELREALEQAER---ARKQAESELDELQERLNEL 649 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345677888888999988888887666 3445556677777777664
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.84 E-value=2.1e-13 Score=195.85 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 283 YMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMV 362 (1837)
Q Consensus 283 ~~kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~i 362 (1837)
...+++|..+..++..+...+....+... . ..+..+..++..+...+..+..++..+..++..+...+..+...+
T Consensus 200 ~~~l~~~~e~~~~~~~l~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 274 (1164)
T TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYEL-L----KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888877777766655433 2 225556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000221 363 EAVNAELSKMK-TELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSA 431 (1837)
Q Consensus 363 e~l~~el~~l~-~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~ 431 (1837)
..++..+..+. ..+..+...+.....++..+......+......+...+.....++..+..++..+...
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 344 (1164)
T TIGR02169 275 EELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344 (1164)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665543 3444444444444444444444444444444444444444444444444444433333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.77 E-value=6e-11 Score=171.10 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 282 TYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREM 361 (1837)
Q Consensus 282 t~~kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ 361 (1837)
-...|++|..+..++..++..+....+..+ . ..+..+...+..+...+..+...+..+..++..+...+..+...
T Consensus 201 q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~-~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 275 (1179)
T TIGR02168 201 QLKSLERQAEKAERYKELKAELRELELALL-V----LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888877766643 2 23566666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000221 362 VEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQ 433 (1837)
Q Consensus 362 ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le 433 (1837)
+..++..+..+...+..+.+.+.....++.........+......+...+.....++..+...+..+...+.
T Consensus 276 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 347 (1179)
T TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666655555444444444444444444444444444444443333
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.71 E-value=1.6e-08 Score=145.86 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=9.7
Q ss_pred HHHHHHhhhcC--chhhhhh
Q 000221 1618 LEKIVNMLESN--EFVVNQK 1635 (1837)
Q Consensus 1618 le~~I~~L~~~--~A~~~~~ 1635 (1837)
+...|..+|.. .|...|+
T Consensus 963 l~~~i~~l~~vN~~Ai~~~~ 982 (1164)
T TIGR02169 963 VEEEIRALEPVNMLAIQEYE 982 (1164)
T ss_pred HHHHHHHcCCCChHHHHHHH
Confidence 44456667652 4555544
No 14
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.2e-09 Score=132.82 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=151.7
Q ss_pred HHHHHHHhhhhHhhhhhhhh---ccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000221 1261 TAEGFQMRTKILTDTFEHFS---VSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDAT 1337 (1837)
Q Consensus 1261 ~~e~~~~~~~~L~~~~~~~~---~~idq~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~~l~~~~~~~ee~l~~le~~l~ 1337 (1837)
.+..++.+.+-|...++... ..+|+.|++|++.++.++..+..+..++.+++.++..+..+....+.++..+.+.+.
T Consensus 672 ~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le 751 (1200)
T KOG0964|consen 672 NVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELE 751 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Confidence 34444444444443333322 458899999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHH---HHHHHHHHhhhh-ccC--CchhhhhhcccCCCCCCCccCCCCccccccccccchHHHHHHHHHHhhhh
Q 000221 1338 VLLSACIDA---TRELQFEVKNNL-LEL--NSVPELENLNRGFSQPESKVDGDDTTDHQKSLHGNRYHEAAENLLFSARK 1411 (1837)
Q Consensus 1338 ~l~~~~~~~---~~~le~el~~~l-~~l--~~~~eLe~~~~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~~~L~~~~~~ 1411 (1837)
.+...+... ...++.++...| .+| .....+..++..+..+ +.++..+..........
T Consensus 752 ~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l-----------------~~kl~~~~~er~~~~~r 814 (1200)
T KOG0964|consen 752 EIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKL-----------------SVKLRALREERIDIETR 814 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 554444433 344444444444 221 2222444444332211 11222222222222222
Q ss_pred hhHHHHHhhhhhhHhhccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1412 AQPLAKLFEMTSTVAASTIQDLQKKLQD-----TTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKE 1486 (1837)
Q Consensus 1412 l~~~~~~~~~~~~~l~~~~~eLq~~L~e-----~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~~~~le 1486 (1837)
..++...+.. .|..++.+|+..+.+ .+..++..+.+.+....++...-.++..+++.++.......+.....
T Consensus 815 k~~le~~l~~---kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~l 891 (1200)
T KOG0964|consen 815 KTALEANLNT---KLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKEL 891 (1200)
T ss_pred HHHHHHHHHH---HHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 2333333332 677777888777754 23455556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCH----HHHHHHHHhhhcccccccccc
Q 000221 1487 EKLKENEAKISLLYDRLSRKEQEAEGLFLSP----LQIRKLVDKISGIEIPYAESA 1538 (1837)
Q Consensus 1487 ekl~~~~~ei~~l~~~l~~~e~e~e~~~~~~----~eleel~~ki~~l~~~~~e~~ 1538 (1837)
++++.++.+.... ...+.+.++....+ ...+++.++|+.||..|.+++
T Consensus 892 E~~~~lek~~~~~----~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf 943 (1200)
T KOG0964|consen 892 EKAKNLEKEKKDN----INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAF 943 (1200)
T ss_pred HHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 6665555444332 11122333222222 345689999999999998877
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.67 E-value=3.8e-08 Score=142.21 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhhhHHHHHH
Q 000221 1191 SCFERKIEGLQNMELIVED 1209 (1837)
Q Consensus 1191 ~~~~~k~~~l~~~~~~l~~ 1209 (1837)
.-|..+..+|..+...+..
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~ 1043 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNE 1043 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444444
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.66 E-value=2.1e-07 Score=131.25 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 750 NLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 750 ~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~~L 786 (1837)
.+...+..+...+..+...+......+..+..++..+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 17
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.2e-08 Score=128.72 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHhhhcCCCccchhhh-hhcc--------
Q 000221 571 AELQEKDYNQKELNDLLCKYEEIVEKANKISLEK------------DHMVRVLLKESGTSMEDQDVA-SQTS-------- 629 (1837)
Q Consensus 571 ~~~~ek~~l~~el~~l~~e~~~l~~~~~~~~~e~------------~~~~~~L~dl~~i~le~~~~a-~~~~-------- 629 (1837)
.+.+.+..+...+-.+..++..+..++.....-| .+++..|+.+.+ ..|..| ..++
T Consensus 476 ~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd---~~~~tAle~~aGgrLynvV 552 (1174)
T KOG0933|consen 476 ALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKD---RSYATALETTAGGRLYNVV 552 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCc---chHHHHHHHHhcCcceeEE
Confidence 4555566666666667777777666665554443 356677766555 234444 2222
Q ss_pred CChhHHHHHHHH--HHHhhhh--cccCCc--CCChhHHHHHH
Q 000221 630 SDPTAIISKCIG--KIREQTC--ASSDTS--GADSEMLQTMQ 665 (1837)
Q Consensus 630 ~~~~~~~~~~~~--~l~~~~~--~l~~~~--~~~~E~~~rl~ 665 (1837)
|++..+..+.++ .++++++ +++++. +.+|+..+..+
T Consensus 553 v~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak 594 (1174)
T KOG0933|consen 553 VDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAK 594 (1174)
T ss_pred eechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHH
Confidence 566666666665 6666665 566533 45566544443
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.63 E-value=1.4e-07 Score=122.68 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 525 DLESRLAWLKESFYQAKDEANVLLDQL 551 (1837)
Q Consensus 525 ele~ei~~L~~~l~~~~~e~~~l~~el 551 (1837)
+++..|..+...+..+..++..|...+
T Consensus 139 ~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 139 ELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.57 E-value=9.7e-08 Score=132.99 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=38.0
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhccccc---ccccccccchhhcc--chHHHHHHHHHHHHHHHHHhhh
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQC 302 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~g~le~lE~--~t~~kAekY~el~eel~~Lei~ 302 (1837)
.+..++..+++ |..| +.++|||+| +. ........|++ |...|...|..+....+.++..
T Consensus 112 ~~~~~i~~~~~--~~~f~~~~~~~Qg~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (880)
T PRK03918 112 SVREWVERLIP--YHVFLNAIYIRQGEIDAILE-SDESREKVVRQILGLDDYENAYKNLGEVIKEIKRR 177 (880)
T ss_pred HHHHHHHHhcC--HHHhceeEEEeccchHHHhc-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667777554 7888 677899999 32 22334466666 7777777776666665555444
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=99.55 E-value=8e-08 Score=133.43 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=71.1
Q ss_pred hHhHhHH-HHHHHHHHHH--HHHhccccc---ccccccccchhhcc--chHHHHHHHHHHHHHHHHHhhhhcCCCchhhH
Q 000221 241 EKDQYVE-VVADRMLSYL--AMVVYQGEL---MDSSISGKISHVEQ--STYMLIEKYNQMLYEIYQLGQCLSKPDPERRV 312 (1837)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~--~~~~~~~~~---~~~~~~g~le~lE~--~t~~kAekY~el~eel~~Lei~l~~~~~~~~~ 312 (1837)
++..++. .++|.++..| ..++|||+| +..+......+|.+ |+..+-.-|..+...+..+...+.....-
T Consensus 112 ~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~le~~--- 188 (895)
T PRK01156 112 DTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYL--- 188 (895)
T ss_pred HHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4567777 7899999999 678999998 32233455678887 88887777777777777666554333111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 313 QEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVN 366 (1837)
Q Consensus 313 ~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~ 366 (1837)
...+..+..++..+...+..+...+..+..++..+...+......+..+.
T Consensus 189 ----~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 189 ----EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12244455555555555555555555555544444444444444443333
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=99.55 E-value=5.9e-08 Score=134.82 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 693 NDLSNKLRVASEEFGALKEEKESQQKDLERSE 724 (1837)
Q Consensus 693 ~~l~~el~~l~~e~e~lk~el~~l~~eL~~le 724 (1837)
..+..++..+..++..+...+..+...+..+.
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.3e-06 Score=112.90 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhhcCCcchhhhhhhHHHHHHHHHHHHHHHhhhHhhhHhhHHhhccCCCCCCcchhhHHHHHHHHHHHHHH
Q 000221 460 NLMLEKSEEVLAQIDIPEELQSLDMVERIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQ 539 (1837)
Q Consensus 460 ~~~l~~lee~~~~~~~~~~~~~~el~ek~e~L~e~~~el~~~~~el~~l~e~l~~~~l~~~~~~~ele~ei~~L~~~l~~ 539 (1837)
++|+.+|+++.+.-.|..++. .+..+++-|.+.+........-+.+-++.|+.. .+....+...++++..+.+.+.+
T Consensus 250 ~GmLEYLEDIIGT~ry~~~I~--~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~-k~~al~fL~kenel~~~~~~~~q 326 (1293)
T KOG0996|consen 250 EGMLEYLEDIIGTNRYKEPIE--ELMRRVERLNEDRSEKENRVKLVEKEKKALEGP-KNEALEFLKKENELFRKKNKLCQ 326 (1293)
T ss_pred chHHHHHHHHhcccccchhHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999877755 555677777766543332222234444444432 23445566667777777666665
Q ss_pred H
Q 000221 540 A 540 (1837)
Q Consensus 540 ~ 540 (1837)
.
T Consensus 327 ~ 327 (1293)
T KOG0996|consen 327 Y 327 (1293)
T ss_pred H
Confidence 5
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.44 E-value=1.8e-14 Score=192.97 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=0.0
Q ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000221 1425 VAASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVED 1481 (1837)
Q Consensus 1425 ~l~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~ 1481 (1837)
.+...+..++.++.++...++..+..++.+...+..++..+..++.++.++...+..
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~ 627 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQ 627 (859)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555666666655555556666666666655555555543
No 24
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=1.1e-05 Score=103.75 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----
Q 000221 524 SDLESRLAWLKESFYQAKDEANVLLDQLNRM---KEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVE----- 595 (1837)
Q Consensus 524 ~ele~ei~~L~~~l~~~~~e~~~l~~el~~~---l~~~~~ei~~L~~~l~~~~~ek~~l~~el~~l~~e~~~l~~----- 595 (1837)
.+++..+.|+..++......+..+...+... ...+...++.+.........+-..+..++..+...+..+..
T Consensus 405 ~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~ 484 (1141)
T KOG0018|consen 405 AELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEG 484 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3566777777777766655555555444443 33333333333333333333333333444444333333222
Q ss_pred --------HHHHhhhhhhHHHHHHhhhcCCCccchhhhhhcc---------CChhHHHHHHHHHHHhhh
Q 000221 596 --------KANKISLEKDHMVRVLLKESGTSMEDQDVASQTS---------SDPTAIISKCIGKIREQT 647 (1837)
Q Consensus 596 --------~~~~~~~e~~~~~~~L~dl~~i~le~~~~a~~~~---------~~~~~~~~~~~~~l~~~~ 647 (1837)
.+.....-+-++...++||+.-.=..|.+|.+.+ |++..++..|+.+|+.+.
T Consensus 485 sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr 553 (1141)
T KOG0018|consen 485 SRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQR 553 (1141)
T ss_pred HHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhc
Confidence 1122222223334455677763335788887766 888899999999998744
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.37 E-value=1.5e-05 Score=104.18 Aligned_cols=88 Identities=24% Similarity=0.303 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHH
Q 000221 340 NLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELE 419 (1837)
Q Consensus 340 kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~ 419 (1837)
++..+..++.....+...+...+..++.++ ....++.++.. .+.........+.. ++.....+..+..+.+
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~-------~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~e 124 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQ-------ELEKAQYEFESLQE-LDKAQEQFERLQAERE 124 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHH-------Hhhhcccccchhhh-hhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444 33333333333 32233223222333 4444445555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000221 420 KCLAELQEKSSALQAAE 436 (1837)
Q Consensus 420 ~~~~ele~~~~~le~~e 436 (1837)
.+..++..+...++.++
T Consensus 125 r~~~El~~lr~~lE~~q 141 (775)
T PF10174_consen 125 RLQRELERLRKTLEELQ 141 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444444
No 26
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.7e-05 Score=100.45 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=31.3
Q ss_pred cccccchhhcc------chHHHHHHHHHHHHHHHHHhhhhcCCCchhh
Q 000221 270 SISGKISHVEQ------STYMLIEKYNQMLYEIYQLGQCLSKPDPERR 311 (1837)
Q Consensus 270 ~~~g~le~lE~------~t~~kAekY~el~eel~~Lei~l~~~~~~~~ 311 (1837)
...++|.|||+ .-..-+++|.+|..+.+.|+-+++......+
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~ 235 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEI 235 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHH
Confidence 47778888887 2334577899999999988888887766543
No 27
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.29 E-value=7.9e-05 Score=103.35 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=48.9
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhccccc---cc--cc-------ccccchhhccchHHHHHHHHHHHHHHHHHhhhhc
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---MD--SS-------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLS 304 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~--~~-------~~g~le~lE~~t~~kAekY~el~eel~~Lei~l~ 304 (1837)
.+..++..++|.+|+.| ++++|||+| +. |+ ...++..++.......+.+..+......++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999 999999999 32 22 4445566666667777777777777777777666
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.09 E-value=0.00072 Score=96.14 Aligned_cols=56 Identities=27% Similarity=0.212 Sum_probs=32.2
Q ss_pred hhhhhhhhhHHHHHHHHhccccChh----hhhhhhhhccC---CCCCCcccccccccccccCCCc
Q 000221 1676 KEVDDLTTKVDLLEESLHGRRDQPE----IVQERSIFEAS---SLPTGSEISEVEDVMQGTLGQK 1733 (1837)
Q Consensus 1676 ~~~~dL~~y~kaLd~ai~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1733 (1837)
.-..+|..|+..|+.....-.++-. -|.+.-.|++- ..-+.|.|.+++-| .|+..+
T Consensus 989 ~~~~~i~~f~~~l~~~~r~I~~~s~~l~~~v~~~~~~~~i~~i~v~i~s~i~~l~~w--~~Lk~F 1051 (1201)
T PF12128_consen 989 NIGNDISNFYGVLEDFDRRIKSQSRRLSREVSEDLFFEAISDIEVRIRSSIDELEFW--KPLKQF 1051 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccccceeEEEEEechhhhccH--HHHHHH
Confidence 4456777888887776444444421 12222223322 45566788888888 777765
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.05 E-value=0.00094 Score=94.42 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 365 VNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE 436 (1837)
Q Consensus 365 l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~~e 436 (1837)
+...+..+...++.....+....+.+.....+...+......++..+.+....+..+..++..+...+..++
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le 424 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444445555555555555555555555555555555554444
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=0.00051 Score=88.19 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000221 915 GKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVA----KNNMSVLICEKEEAQASGAAAVVELEQVREEFASQT 990 (1837)
Q Consensus 915 ~~~~le~elekl~~el~~~~~kl~e~~~~i~~le~~l~~l----~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~ 990 (1837)
.+..+...+.....++......+..+...+..++..+... ...+..+..++..+.........++++-+.+...+.
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~ 821 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566556666666666665555554443 334455555555555555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 991 SKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIK 1058 (1837)
Q Consensus 991 ~kl~e~~~~l~~Le~~l~~le~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~ 1058 (1837)
...++....+...+..+..+...++.+..++ ..........+.....+..++...+..+.++...+.
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~-~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~ 888 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSEL-GNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEIS 888 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 6666666666666666666665555554443 111122233333444444444444444444443333
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.93 E-value=0.0025 Score=90.79 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000221 1141 VSALNSKLNACRDELAGTIGSLESRSVELIGH 1172 (1837)
Q Consensus 1141 ~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~ 1172 (1837)
+..+-..|..+...+....+.+.....+|...
T Consensus 987 ~~~~~~~i~~f~~~l~~~~r~I~~~s~~l~~~ 1018 (1201)
T PF12128_consen 987 GRNIGNDISNFYGVLEDFDRRIKSQSRRLSRE 1018 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444555555555555555544443
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.90 E-value=0.0012 Score=85.36 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000221 1032 AVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGS 1101 (1837)
Q Consensus 1032 ~e~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~ 1101 (1837)
+..++...+.++..++.+.......+..|..++..+..++..+...-.........+...|..+..+...
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~ 383 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEE 383 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444555555555554444444444443333333344444444444444333
No 33
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.86 E-value=0.0036 Score=87.92 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=91.1
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhccccc---cccc---------ccccchhhccchHHHHHHHHHHHHHHHHHhhhhcCC
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---MDSS---------ISGKISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKP 306 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~---------~~g~le~lE~~t~~kAekY~el~eel~~Lei~l~~~ 306 (1837)
++...|+.+||++|+.| ..|+|||+| ++-+ ...+++.+.+.+....+++......+..+...+..+
T Consensus 131 ~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~ 210 (1047)
T PRK10246 131 DKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGV 210 (1047)
T ss_pred HHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56788899999999999 899999999 4433 333344444444455566666667777777666444
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 000221 307 DPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGT 386 (1837)
Q Consensus 307 ~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~ 386 (1837)
.+-. .+ ....+..++..+......+...+..+......+.. ...+...+......+..+......+ ...
T Consensus 211 ~~ls--~e----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~----~~~ 279 (1047)
T PRK10246 211 ALLT--PE----QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTR-LDELQQEASRRQQALQQALAAEEKA----QPQ 279 (1047)
T ss_pred cCCC--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh----hhH
Confidence 3211 11 13334444444444444444444444333322111 1122222222222222222222221 112
Q ss_pred HHHHHHH--HHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000221 387 KEKLSLA--VTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQA 434 (1837)
Q Consensus 387 ~Eki~~~--~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~ 434 (1837)
..++..+ .....+.......+...+......+..+...+.........
T Consensus 280 ~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (1047)
T PRK10246 280 LAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRAR 329 (1047)
T ss_pred HHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22344555566666666666666666666665554444333
No 34
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.74 E-value=0.0032 Score=81.32 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHH
Q 000221 700 RVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLK 766 (1837)
Q Consensus 700 ~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk 766 (1837)
..+....+.|+.++......|...+.++.++...+..+.+.+.+|..+...+.....++...++.++
T Consensus 1228 ~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1228 AQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555555566666666666555555555555556666666666555555555544
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.65 E-value=0.0019 Score=80.70 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1032 AVLELEQVREEFVSQTSKLTEAYTTIK 1058 (1837)
Q Consensus 1032 ~e~ele~l~~E~~~~~~~l~~~~~~i~ 1058 (1837)
...++...+-+...++.++.++...++
T Consensus 323 t~aeLh~aRLe~aql~~qLad~~l~lk 349 (546)
T PF07888_consen 323 TMAELHQARLEAAQLKLQLADASLELK 349 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544443
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.65 E-value=0.0077 Score=79.51 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000221 853 INECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKI-TQLADEKRQVEVGKKNVEEELEKAIEEAH 931 (1837)
Q Consensus 853 ~~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l-~~l~~e~~~le~~~~~le~elekl~~el~ 931 (1837)
+..+...+..+..+...++.++......+...+..+..++..+..++... ..+..+..+.+..+..+..++++++..+.
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444 44445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000221 932 IQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAA 975 (1837)
Q Consensus 932 ~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~l 975 (1837)
.+..+...+...+...+.+.......+..+...+......+..+
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544444444444443333
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.63 E-value=0.0071 Score=78.22 Aligned_cols=82 Identities=24% Similarity=0.243 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 938 AEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAML 1017 (1837)
Q Consensus 938 ~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l 1017 (1837)
......+.....++......+.....++..+......++.++...+.++..+..+.......+..|...+..++.++..+
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 33444455666666666666666677777777777777777777777777777777777777777777777777777555
Q ss_pred HH
Q 000221 1018 TE 1019 (1837)
Q Consensus 1018 ~e 1019 (1837)
..
T Consensus 357 ~~ 358 (522)
T PF05701_consen 357 KA 358 (522)
T ss_pred Hh
Confidence 43
No 38
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.55 E-value=0.011 Score=76.30 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=12.3
Q ss_pred cccccccccccccCCCchhh
Q 000221 1778 HVFKSLNTLGLIPRQGKMVA 1797 (1837)
Q Consensus 1778 ~~~~~~~~~~~~~~~~~~~~ 1797 (1837)
|++-++.-++++|-.+-|-|
T Consensus 1076 ~~~t~p~~~rr~pih~S~~a 1095 (1195)
T KOG4643|consen 1076 HIYTSPFLPRRVPIHNSPMA 1095 (1195)
T ss_pred cccCCCCCcccccccCCCCC
Confidence 66666666666665555443
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.54 E-value=0.026 Score=80.29 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=9.6
Q ss_pred ccCCCchhhhccccCCCCCc
Q 000221 1735 ISPVPSAAHTRTMRKGSTDH 1754 (1837)
Q Consensus 1735 ~~~~~~~~~~~~~~~~~~~~ 1754 (1837)
++|+|-+. -.-.||...||
T Consensus 1439 ~~~~~g~~-~~l~rk~~~~~ 1457 (1486)
T PRK04863 1439 ISPEKGTT-YKLVRKVFNNR 1457 (1486)
T ss_pred ccCCCCcc-eeeeeeecCCc
Confidence 34555522 34556776653
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.53 E-value=0.0097 Score=74.52 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1105 KLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN 1149 (1837)
Q Consensus 1105 kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~ 1149 (1837)
.+.+....+.+++..+.-++.+...+..+...+..-+..|..++.
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555544444444444444443
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.51 E-value=0.017 Score=76.52 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 921 EELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTI 1000 (1837)
Q Consensus 921 ~elekl~~el~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l 1000 (1837)
..+..+..++ .|..+......+..+...+...+.....+..+++........+...+...+..++.+....+.....+
T Consensus 262 ~~l~~Lk~k~--~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 262 ENLEQLKAKM--AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEI 339 (1074)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHH
Confidence 3333344333 56666666666666666666666666666666666666665555555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 000221 1001 KSLEDSLAQVEANVA 1015 (1837)
Q Consensus 1001 ~~Le~~l~~le~el~ 1015 (1837)
..+...+..+..+..
T Consensus 340 ~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 340 EEARKDLDDLRREVN 354 (1074)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.49 E-value=0.017 Score=75.84 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 688 VRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKL 767 (1837)
Q Consensus 688 ~~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~ 767 (1837)
++..++..+..+..+...+..+...-..-...+..+..++..++..+... ...+-..++.+...+..+..
T Consensus 110 ~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~----------~~~~G~a~~~le~~l~~~e~ 179 (569)
T PRK04778 110 IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN----------RFSFGPALDELEKQLENLEE 179 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CccccchHHHHHHHHHHHHH
Confidence 33344444444444444444444433334444444555555554444332 22333333344444444444
Q ss_pred HHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000221 768 NLQ------------EQESTISECRDQINRLSNDLDCIRKMEADL 800 (1837)
Q Consensus 768 el~------------~~e~el~el~~~l~~L~~~~e~~~~le~el 800 (1837)
.+. .....+..++..+..+...++.++.+-.++
T Consensus 180 ~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~ 224 (569)
T PRK04778 180 EFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKEL 224 (569)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 233444555555555555555555444333
No 43
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.47 E-value=0.013 Score=73.24 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=9.3
Q ss_pred ccccccCchhhHHH
Q 000221 1808 GRLLMSRPGTRLGL 1821 (1837)
Q Consensus 1808 ~~~~~~~~~~~~~~ 1821 (1837)
-|.||.-|.-|+-+
T Consensus 1117 ARklm~p~~~~yp~ 1130 (1265)
T KOG0976|consen 1117 ARKLMDPPNPRYPG 1130 (1265)
T ss_pred hhhhcCCCCCCCCc
Confidence 47778777777543
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.39 E-value=0.00031 Score=81.36 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000221 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGS 1161 (1837)
Q Consensus 1114 ~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~ 1161 (1837)
..++..+..+...+...+.....+...+..|...+..+..++......
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444433333333
No 45
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.35 E-value=0.033 Score=72.31 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=39.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1077 QNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1077 el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
+...+...+..+...|.....++..+..........+......+....+.+..|...+..++.+...|-.+|..+..
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555555555555555555555555555555555555555555555555555555554443
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.34 E-value=0.035 Score=72.28 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 712 EKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 712 el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~~L 786 (1837)
.+..+-+....+...+..+.+.|... +..+.++...+.....+++.|..+...+...+.+++.++..+
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~-------E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQE-------EETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444333 333444444455555566666666655555555555555544
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.31 E-value=0.00065 Score=78.77 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1055 TTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEK 1134 (1837)
Q Consensus 1055 ~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~ 1134 (1837)
..+..+...+..++.+...+...+..++..+..+...+..+.........+.......+..+...+..+..+....+..+
T Consensus 120 rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v 199 (237)
T PF00261_consen 120 RKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRV 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000221 1135 RISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1135 ~~le~e~~~l~~kl~~l~~ 1153 (1837)
..++..+..+...|.....
T Consensus 200 ~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 200 KKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 48
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.30 E-value=0.015 Score=70.81 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 890 SLEDALSVAEDKITQLADEKRQVE 913 (1837)
Q Consensus 890 ~l~~el~~l~~~l~~l~~e~~~le 913 (1837)
.+..++..++..|..+..++..+.
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~ 74 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLE 74 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHh
Confidence 334444445555555555554443
No 49
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.23 E-value=0.045 Score=68.83 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 979 LEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAML 1017 (1837)
Q Consensus 979 le~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l 1017 (1837)
..++..++..++..+-+.......+.+.+.+++++.+.+
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~a 363 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMA 363 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555444333
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.14 E-value=0.019 Score=72.08 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 000221 786 LSNDLDCIRKMEADLIAMKDERNQF 810 (1837)
Q Consensus 786 L~~~~e~~~~le~el~~l~~eleel 810 (1837)
|..+++++..|+.+-..|...+..+
T Consensus 51 LA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 51 LAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555555444333
No 51
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=98.13 E-value=0.00034 Score=90.22 Aligned_cols=44 Identities=34% Similarity=0.489 Sum_probs=41.9
Q ss_pred cccCCCchhhhhhccceeecccccccCchhhHHHHHHHHHHHHH
Q 000221 1788 LIPRQGKMVADRIDGIWVSGGRLLMSRPGTRLGLIAYSLLLHIW 1831 (1837)
Q Consensus 1788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1831 (1837)
.|++++|+.+..||.|.+.+|.+|+|.|.+|+.+|+|-+.||+|
T Consensus 468 ~~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW 511 (511)
T PF09787_consen 468 GVARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW 511 (511)
T ss_pred hHHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence 47788889999999999999999999999999999999999999
No 52
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.09 E-value=0.15 Score=69.63 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHHH
Q 000221 1294 LQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDAT 1337 (1837)
Q Consensus 1294 l~~l~~~~~~l~~e~e~l~~eL~~l~~~~~~~ee~l~~le~~l~ 1337 (1837)
+..+..+...+......++.+++.++.+.......+..+..-..
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~ 864 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN 864 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666666666666655555555544333
No 53
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.09 E-value=0.016 Score=72.28 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=34.9
Q ss_pred hhhhccceeecccccccCchhhHHHHHHHHHHHHHHhhh
Q 000221 1797 ADRIDGIWVSGGRLLMSRPGTRLGLIAYSLLLHIWLLGT 1835 (1837)
Q Consensus 1797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1835 (1837)
+-..|++++|++|++.-+--+|--.+.|.+.||.++|..
T Consensus 575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~ 613 (629)
T KOG0963|consen 575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIV 613 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998753
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.05 E-value=0.062 Score=65.55 Aligned_cols=57 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 899 EDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAK 955 (1837)
Q Consensus 899 ~~~l~~l~~e~~~le~~~~~le~elekl~~el~~~~~kl~e~~~~i~~le~~l~~l~ 955 (1837)
...+..+...++.+......+..++..+..++..+..++......+..++..+..+.
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444444444444444444444444333333333333333
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.95 E-value=0.16 Score=65.20 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000221 716 QQKDLERSEEKSALLREK 733 (1837)
Q Consensus 716 l~~eL~~leek~~~Lke~ 733 (1837)
++..+..+.+++..++-+
T Consensus 229 Lr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 555555555555555433
No 56
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.92 E-value=0.15 Score=64.00 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 285 LIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEA 364 (1837)
Q Consensus 285 kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~ 364 (1837)
-..-|..|..+.+.+. .|.+..+.- +..-...+....+-+......|..|.-+++.+...+...-
T Consensus 76 ms~LySKL~~EaEKIk--~WKv~vesd--------~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i----- 140 (786)
T PF05483_consen 76 MSRLYSKLYKEAEKIK--KWKVQVESD--------LKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEI----- 140 (786)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH-----
Confidence 3355666666666543 344433210 2223333333333344344444444444444444333322
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000221 365 VNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEK 428 (1837)
Q Consensus 365 l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~ 428 (1837)
.+...+..+.....+-++++++-......+...+...+....+-.-+...-+++.-..++.+
T Consensus 141 --~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeL 202 (786)
T PF05483_consen 141 --QENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEEL 202 (786)
T ss_pred --hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22223333344444555666666555555555555555555544444444444444443333
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.88 E-value=0.18 Score=63.38 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 745 FQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECR 780 (1837)
Q Consensus 745 ~~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~ 780 (1837)
..+..-|...+.+....+..+...+......+..++
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLe 274 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544444444443
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.87 E-value=0.1 Score=65.76 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 000221 979 LEQVREEFASQTSKLT 994 (1837)
Q Consensus 979 le~l~~el~~l~~kl~ 994 (1837)
...+..++..+...++
T Consensus 178 n~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 178 NSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3333333333333333
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.79 E-value=0.34 Score=63.87 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 000221 1138 DQEVSALNSKLN 1149 (1837)
Q Consensus 1138 e~e~~~l~~kl~ 1149 (1837)
...+..+..+..
T Consensus 482 ~~~~~~L~~q~~ 493 (569)
T PRK04778 482 TEDVETLEEETE 493 (569)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.79 E-value=0.33 Score=63.67 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1113 IKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1113 ~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
+..++..+..+........+.+..++.++..+...|..+..
T Consensus 421 i~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 421 ISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.77 E-value=0.0096 Score=78.99 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhccccc---ccccccccchhhcc--chHHH
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---MDSSISGKISHVEQ--STYML 285 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~g~le~lE~--~t~~k 285 (1837)
++..+++.++|.+|.+| ..++|||.| +.....+..++|++ |+..+
T Consensus 114 ~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 114 DFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred HHHHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHHHHHHHhCCHHH
Confidence 56788899999999999 667999998 22234455677777 55543
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.65 E-value=0.0003 Score=95.10 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 000221 1185 LLSAVKSCFERKIEGLQNMELIVEDIR 1211 (1837)
Q Consensus 1185 ~~~~~~~~~~~k~~~l~~~~~~l~~~~ 1211 (1837)
+...+...|..|...|++....|-=|+
T Consensus 621 r~~RLkevf~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 621 RNQRLKEVFKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcce
Confidence 445567788888888887744333333
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.57 E-value=0.64 Score=61.08 Aligned_cols=96 Identities=19% Similarity=0.355 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQ 770 (1837)
Q Consensus 691 el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~ 770 (1837)
.++.++..+..+..++..+...=..-+..+..+..++..++..+.. ....+-..++.+...+..+...+.
T Consensus 109 ~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~----------~~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 109 QLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLA----------HSFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhchhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333444444444444444333 233444444444444444444443
Q ss_pred HH------------HHHHHHHHHHHHHHHhhHHHHHHH
Q 000221 771 EQ------------ESTISECRDQINRLSNDLDCIRKM 796 (1837)
Q Consensus 771 ~~------------e~el~el~~~l~~L~~~~e~~~~l 796 (1837)
.. ...+..++..+..+...++.++.+
T Consensus 179 ~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l 216 (560)
T PF06160_consen 179 EFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKL 216 (560)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 32 333444444444444444444443
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.55 E-value=0.3 Score=56.73 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN 1149 (1837)
Q Consensus 1114 ~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~ 1149 (1837)
..+...+-.....+..+...+..+...+..+...+.
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.51 E-value=0.083 Score=69.96 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1115 ~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
.|=..|..++..++.++..+...+.+|.+|+.+|..+..
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666666666666666654443
No 66
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.44 E-value=0.0013 Score=88.88 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 783 INRLSNDLDCIRKMEADLIAMKDERNQFE 811 (1837)
Q Consensus 783 l~~L~~~~e~~~~le~el~~l~~eleel~ 811 (1837)
...|+..+.+.+.++.++..+.-+...++
T Consensus 290 ~~sLq~kl~~~E~~~~el~~lq~e~~~Le 318 (722)
T PF05557_consen 290 KRSLQRKLERLEELEEELAELQLENEKLE 318 (722)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333434444443333333333
No 67
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.38 E-value=0.79 Score=57.56 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhh
Q 000221 1286 FIAALLRKLQTTRDEVVRMTQCMDSLRGKVK 1316 (1837)
Q Consensus 1286 ~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~ 1316 (1837)
.|+.|+..+..++..+..+-.++-.|-.+++
T Consensus 867 Elthlq~e~~~le~~Rs~laeElvklT~e~e 897 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSSLAEELVKLTAECE 897 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444433
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.36 E-value=1.3 Score=59.71 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.4
Q ss_pred HHHhccccc
Q 000221 258 AMVVYQGEL 266 (1837)
Q Consensus 258 ~~~~~~~~~ 266 (1837)
.-|.|.|.|
T Consensus 80 lKvIGrGaF 88 (1317)
T KOG0612|consen 80 LKVIGRGAF 88 (1317)
T ss_pred HHHhccccc
Confidence 344555554
No 69
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.36 E-value=4.3e-05 Score=102.79 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000221 763 EKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAM 803 (1837)
Q Consensus 763 e~lk~el~~~e~el~el~~~l~~L~~~~e~~~~le~el~~l 803 (1837)
..++..+..++..+..++.+...+.........+..++..+
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~l 303 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDEL 303 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33333334444444444444444444333344444444333
No 70
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.30 E-value=1.3 Score=58.24 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 694 DLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKG-----KGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1837)
Q Consensus 694 ~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~-----~~l~~e~~~Lk~~i~el~~ele~lk~e 768 (1837)
.+......+...++.++.-+..+...+- ..+..|+..+.....++ -.+..++..+...+......|..+ +
T Consensus 198 ~l~~~~~~l~~~~e~IP~l~~~l~~~~P---~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~ 272 (560)
T PF06160_consen 198 KLKEETDELEEIMEDIPKLYKELQKEFP---DQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--E 272 (560)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhH---HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 3344444444444444444444433322 22333333444433332 134455666666666555555443 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000221 769 LQEQESTISECRDQINRLS 787 (1837)
Q Consensus 769 l~~~e~el~el~~~l~~L~ 787 (1837)
+......+..+..+++.+-
T Consensus 273 l~~~~~~~~~i~~~Id~lY 291 (560)
T PF06160_consen 273 LDEVEEENEEIEERIDQLY 291 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554443
No 71
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.24 E-value=0.063 Score=63.83 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCchhhhhhccceeecccccccCchhhHHHHHHHHHHHHHHhhhcC
Q 000221 1792 QGKMVADRIDGIWVSGGRLLMSRPGTRLGLIAYSLLLHIWLLGTIL 1837 (1837)
Q Consensus 1792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1837 (1837)
|++-..--||....--+-+|++.|.+|+-.++|.++||+|++...|
T Consensus 502 q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlL 547 (554)
T KOG4677|consen 502 QLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLL 547 (554)
T ss_pred HHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4555567789988888999999999999999999999999987543
No 72
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=1.2 Score=55.85 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhh
Q 000221 1147 KLNACRDELAGTIGSLESRSVELIGHLNDLQM 1178 (1837)
Q Consensus 1147 kl~~l~~el~~~~~~le~~~~eL~~~ledlq~ 1178 (1837)
....+...+....+.+-..+.-++..++++.+
T Consensus 536 er~ki~~ql~~~i~~i~~~k~~iqs~le~~k~ 567 (581)
T KOG0995|consen 536 ERQKIAKQLFAVIDQISDFKVSIQSSLENLKA 567 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555555555555555555444
No 73
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=1.6 Score=56.84 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1070 NVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN 1149 (1837)
Q Consensus 1070 ~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~ 1149 (1837)
.+..+.++..-+......+..++..+..-+........++......++..+......+..++..+.....++..+..+..
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~ 604 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRK 604 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444555555555544555555555554
Q ss_pred HHHHHHHhhhhhhh
Q 000221 1150 ACRDELAGTIGSLE 1163 (1837)
Q Consensus 1150 ~l~~el~~~~~~le 1163 (1837)
.+.+++..+++.++
T Consensus 605 rleEE~e~L~~kle 618 (698)
T KOG0978|consen 605 RLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444443
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=0.35 Score=64.18 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000221 862 QLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVE 920 (1837)
Q Consensus 862 ~~e~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~~le~~~~~le 920 (1837)
.++.++.+++.++......-.+++.++..+...-..++..+..+..+.+.++..+..+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444444444444433333344444444444444444333333
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=2.5 Score=56.61 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 950 EMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQ 1020 (1837)
Q Consensus 950 ~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l~ee 1020 (1837)
.+..++..+..+..++......+...+.++..+...+.....++..+.+.+...+..+..++.++..+...
T Consensus 684 ~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 684 KIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444445555555555555555555555555555555555555555443
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.02 E-value=1.1 Score=52.27 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1092 LQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKR 1135 (1837)
Q Consensus 1092 L~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~ 1135 (1837)
...++.+...+..++-.....+..+...+..+++.+..++..+.
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444333
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=1.9 Score=54.12 Aligned_cols=8 Identities=0% Similarity=-0.118 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 000221 636 ISKCIGKI 643 (1837)
Q Consensus 636 ~~~~~~~l 643 (1837)
...||..|
T Consensus 105 F~~iFkfL 112 (581)
T KOG0995|consen 105 FIAIFKFL 112 (581)
T ss_pred HHHHHHHH
Confidence 33344443
No 78
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=1.2 Score=57.30 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH----HHHHHHh----hHhHHH---HhhhhhhccCcHHHhhHhHhHHHHHHHHHHHHHH
Q 000221 191 SAIREINAVLYKKDREIEHLNA----KVAEILV----SHDVAA---AYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAM 259 (1837)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1837)
.+|.=|-++++-|-.++-++-. .|+-+++ ||||++ +|.-+.+. .-.-.+++.=++|++..|- |.+
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~-k~n~~IQKlVAFENaFerL---fsI 216 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV-KDNSSIQKLVAFENAFERL---FSI 216 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH-ccCchHHHHHHHHHHHHHH---HHH
Confidence 5667788888888887776643 3444443 677776 45444331 2222466677777776665 344
Q ss_pred Hhccc
Q 000221 260 VVYQG 264 (1837)
Q Consensus 260 ~~~~~ 264 (1837)
|-..|
T Consensus 217 IeeEG 221 (970)
T KOG0946|consen 217 IEEEG 221 (970)
T ss_pred HHhcC
Confidence 44444
No 79
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=2.2 Score=55.20 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 688 VRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLS 735 (1837)
Q Consensus 688 ~~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~ 735 (1837)
...++..+......+..+++.+++++....+...++...+..|+.++.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444455555566666666666666666666666666666666655
No 80
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=3.1 Score=54.32 Aligned_cols=117 Identities=14% Similarity=0.224 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1034 LELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTI 1113 (1837)
Q Consensus 1034 ~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~ 1113 (1837)
.++..+...+..+..........+..++.....+......+..++......+.........+...+..+..+++...+.+
T Consensus 503 ~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~l 582 (698)
T KOG0978|consen 503 EEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKL 582 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444555555554455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1837)
Q Consensus 1114 ~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~ 1150 (1837)
..++.........+.........++.++..++.++..
T Consensus 583 e~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~ 619 (698)
T KOG0978|consen 583 EQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444445555545444443
No 81
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.79 E-value=5.6 Score=56.84 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=43.7
Q ss_pred hHhHhHHHHHHHHHHHH--HHHhccccc---ccccccccchhhcc--chHHHHHH-------HHHHHHHHHHHhhhhcCC
Q 000221 241 EKDQYVEVVADRMLSYL--AMVVYQGEL---MDSSISGKISHVEQ--STYMLIEK-------YNQMLYEIYQLGQCLSKP 306 (1837)
Q Consensus 241 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~g~le~lE~--~t~~kAek-------Y~el~eel~~Lei~l~~~ 306 (1837)
++..+|..++|++|+.| .+++|||+| +..+....-++|++ ||..|..- +..+...+..+...+...
T Consensus 127 ~~~~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (1042)
T TIGR00618 127 ETEEVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLL 206 (1042)
T ss_pred HHHHHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56888999999999999 889999999 43333334455666 65555543 444455555555555433
No 82
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.77 E-value=1.6 Score=50.48 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 942 ASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQ 1020 (1837)
Q Consensus 942 ~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l~ee 1020 (1837)
..+......+..+..+...+..+++.-...+..++.+++.+...+...-...+.....-.+++-.+.....+.-.++..
T Consensus 56 kTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk 134 (305)
T PF14915_consen 56 KTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK 134 (305)
T ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444555555556666666666666666777777777666666555555444444455555555555544444433
No 83
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.75 E-value=0.00036 Score=94.06 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000221 759 NSEIEKLKLNLQEQESTISECR 780 (1837)
Q Consensus 759 ~~ele~lk~el~~~e~el~el~ 780 (1837)
..++..++.++...+..+.+++
T Consensus 245 ~~ql~~L~~el~~~e~~~~d~~ 266 (713)
T PF05622_consen 245 RAQLRRLREELERLEEQRDDLK 266 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=3 Score=54.63 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 935 SKFAEACASRKSLEDEMSVAKNNMSVL 961 (1837)
Q Consensus 935 ~kl~e~~~~i~~le~~l~~l~~el~~l 961 (1837)
..+-++-..|..-+..|..+-.+...+
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~DTr~l 517 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSDTREL 517 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.69 E-value=3.1 Score=52.59 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1446 KVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKL 1489 (1837)
Q Consensus 1446 ~~~~e~e~~~~~l~~Le~~i~~l~~~~~el~~~l~~~~~leekl 1489 (1837)
+++-+.-.+....+-|-.++-.+..+|+.++.+.+.+..++..+
T Consensus 870 hlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~l 913 (961)
T KOG4673|consen 870 HLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAEL 913 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333333344444444444444444443333333
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.65 E-value=4.2 Score=53.56 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000221 535 ESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYE 591 (1837)
Q Consensus 535 ~~l~~~~~e~~~l~~el~~~l~~~~~ei~~L~~~l~~~~~ek~~l~~el~~l~~e~~ 591 (1837)
..+.++..+++..-..++.-...++..+..+...+..+..+|......+..|...+.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~ 60 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLS 60 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444443344445555555555555555554444444444433
No 87
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.60 E-value=2.4 Score=50.18 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 888 MKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEE 967 (1837)
Q Consensus 888 i~~l~~el~~l~~~l~~l~~e~~~le~~~~~le~elekl~~el~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~ 967 (1837)
++.+...+..++.++.....++..++.+.+....++.+...+..........+...+.+....+..+......+...+..
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555665655555556666666666666555555555555555544544444444444444444
Q ss_pred HHHhHHHHHH
Q 000221 968 AQASGAAAVV 977 (1837)
Q Consensus 968 l~~~~~~le~ 977 (1837)
+......+..
T Consensus 156 l~~qr~ql~a 165 (499)
T COG4372 156 LAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 88
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.35 E-value=3.7 Score=49.55 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 841 EPLEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMK 889 (1837)
Q Consensus 841 el~eki~~~~~~~~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i~ 889 (1837)
.|.+++..+...+.++-.........+..+......+..+...+.....
T Consensus 19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~ 67 (309)
T PF09728_consen 19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS 67 (309)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555555544444444444444444444444443333
No 89
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.31 E-value=1 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1054 YTTIKSLEDALSQVEANVAVLTE 1076 (1837)
Q Consensus 1054 ~~~i~~L~~el~~~e~~~~~l~~ 1076 (1837)
...+..++.++...+.++..+..
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.25 E-value=1.2 Score=50.89 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 000221 1148 LNACRDEL 1155 (1837)
Q Consensus 1148 l~~l~~el 1155 (1837)
...+...+
T Consensus 165 ~~~L~~~l 172 (239)
T COG1579 165 REELKEKL 172 (239)
T ss_pred HHHHHHhc
Confidence 33333333
No 91
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.16 E-value=8.4 Score=51.75 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1068 EANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDAL 1120 (1837)
Q Consensus 1068 e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l 1120 (1837)
......+..++..++.+...|.+-|.+.+.+++-.+..+...-.++..++.++
T Consensus 257 ~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 257 SKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777887788888887777777776666666666665
No 92
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=7.5 Score=50.12 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhHhhhhhh
Q 000221 1258 FRKTAEGFQMRTKILTDTFEH 1278 (1837)
Q Consensus 1258 ~~~~~e~~~~~~~~L~~~~~~ 1278 (1837)
.+...+.|+.++..|+.-+.+
T Consensus 557 ~k~~~e~LqaE~~~lk~~l~~ 577 (716)
T KOG4593|consen 557 KKNRLEELQAELERLKERLTA 577 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666664433
No 93
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.92 E-value=9.5 Score=50.33 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 000221 1285 EFIAALLRKLQ 1295 (1837)
Q Consensus 1285 q~i~~L~~~l~ 1295 (1837)
+.|-+|...|+
T Consensus 576 qqImqLL~eiQ 586 (617)
T PF15070_consen 576 QQIMQLLQEIQ 586 (617)
T ss_pred HHHHHHhHhcC
Confidence 44444444443
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.89 E-value=1.3 Score=46.93 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 986 FASQTSKLTEAYKTIKSLEDSLAQVEANVAML 1017 (1837)
Q Consensus 986 l~~l~~kl~e~~~~l~~Le~~l~~le~el~~l 1017 (1837)
+.........+.+.+..++.....+...++.+
T Consensus 103 l~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333344444444444444444444444444
No 95
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.81 E-value=1.8 Score=45.96 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 978 ELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEA 1012 (1837)
Q Consensus 978 ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~ 1012 (1837)
++......+.....++.+.......++..+..+..
T Consensus 88 ele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 33333333344444444444444444444433333
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=11 Score=48.66 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhh
Q 000221 1127 ISVLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLND 1175 (1837)
Q Consensus 1127 i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~led 1175 (1837)
...|.......+.-+..++..+..+..+...+..++.....++....++
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~ 578 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED 578 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555444444444333
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.54 E-value=6.6 Score=45.74 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 000221 946 SLEDEMSVAKNNM 958 (1837)
Q Consensus 946 ~le~~l~~l~~el 958 (1837)
.++.++......+
T Consensus 88 rLEtEiES~rsRL 100 (305)
T PF14915_consen 88 RLETEIESYRSRL 100 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.54 E-value=7.2 Score=46.17 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1046 QTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKN 1125 (1837)
Q Consensus 1046 ~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~ 1125 (1837)
...++..+...+..|..+|+.-..+.....+++..+..++.+++..++.+..+-..+...+......-..+..++..++.
T Consensus 204 cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 204 CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555555555555555555555555555555555444444444444333333333333333
Q ss_pred HHHH
Q 000221 1126 DISV 1129 (1837)
Q Consensus 1126 ~i~~ 1129 (1837)
+...
T Consensus 284 kY~E 287 (306)
T PF04849_consen 284 KYAE 287 (306)
T ss_pred HHHH
Confidence 3333
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.52 E-value=13 Score=48.92 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 000221 1138 DQEVSALNSKLN 1149 (1837)
Q Consensus 1138 e~e~~~l~~kl~ 1149 (1837)
..++.+|+.+|.
T Consensus 577 ~rEirdLe~qI~ 588 (594)
T PF05667_consen 577 SREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHHHHH
Confidence 444444554444
No 100
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.29 E-value=5.6 Score=43.36 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000221 872 QEASALASELAETQSTM 888 (1837)
Q Consensus 872 ~eie~l~~el~e~~~~i 888 (1837)
..+..+..++...+.++
T Consensus 11 rri~~leeele~aqErl 27 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERL 27 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 101
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.19 E-value=11 Score=46.08 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhh
Q 000221 1149 NACRDELAGTIGSLESRSVELIGHLNDLQMHM 1180 (1837)
Q Consensus 1149 ~~l~~el~~~~~~le~~~~eL~~~ledlq~~~ 1180 (1837)
..+........+..-+.+..++.-++|+.+.+
T Consensus 579 ~~i~k~V~~v~~~~~~fk~~IQssledl~~~l 610 (622)
T COG5185 579 YKIHKQVIHVIDITSKFKINIQSSLEDLENEL 610 (622)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHH
Confidence 33344555666666666777777777766544
No 102
>PRK09039 hypothetical protein; Validated
Probab=95.09 E-value=3 Score=51.24 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000221 1000 IKSLEDSLAQVEANVAML 1017 (1837)
Q Consensus 1000 l~~Le~~l~~le~el~~l 1017 (1837)
+..++.++..++.+|..+
T Consensus 48 i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 48 ISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.92 E-value=14 Score=45.82 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 711 EEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 711 ~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~~L 786 (1837)
..++..+.+++..+.++.... +....|...|..++.++..+..++......+..++..|..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~--------------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ--------------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 445555566555555554433 23444444555555555555555544444444444444443
No 104
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.83 E-value=23 Score=47.95 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 688 VRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKL 767 (1837)
Q Consensus 688 ~~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~ 767 (1837)
...++..++.++..+..+...+..++..+..++..++.++..++..+... +..+..++..++..+..+..++.....
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~---GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSE---GGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777777777777777777777776666665543 345556666777777666666666665
Q ss_pred HHHH
Q 000221 768 NLQE 771 (1837)
Q Consensus 768 el~~ 771 (1837)
.+..
T Consensus 284 ~l~~ 287 (650)
T TIGR03185 284 QLRE 287 (650)
T ss_pred HHHH
Confidence 5543
No 105
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.74 E-value=6.5 Score=41.32 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000221 920 EEELEKAIEEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQV 982 (1837)
Q Consensus 920 e~elekl~~el~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l 982 (1837)
+.+++........+..........+..++..+..+...+..+..++..+...+..+...+...
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444444444444444333333333333
No 106
>PRK09039 hypothetical protein; Validated
Probab=94.27 E-value=8.8 Score=47.22 Aligned_cols=9 Identities=56% Similarity=0.903 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 000221 1035 ELEQVREEF 1043 (1837)
Q Consensus 1035 ele~l~~E~ 1043 (1837)
++..++.++
T Consensus 191 ~l~~~~~~~ 199 (343)
T PRK09039 191 ELNRYRSEF 199 (343)
T ss_pred HHHHhHHHH
Confidence 344444444
No 107
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.20 E-value=30 Score=46.71 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 866 ELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAEACASRK 945 (1837)
Q Consensus 866 el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~~le~~~~~le~elekl~~el~~~~~kl~e~~~~i~ 945 (1837)
++..+......+...+..+...++.+..++...+..+..+..+..........++.++..+......+...+..+...+.
T Consensus 597 elE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 597 ELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444444444444444444455555455555555555555554444444444444444444433333333333333333
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.08 E-value=29 Score=46.07 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1086 TTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEK 1134 (1837)
Q Consensus 1086 ~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~ 1134 (1837)
..|...+..+..+...+..+.++.....+.++.++..+..++..++..+
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333443333333444444444444444443333
No 109
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.05 E-value=17 Score=43.22 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000221 854 NECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQVEVGKKNVEEELEKAIEEAHIQ 933 (1837)
Q Consensus 854 ~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~~le~~~~~le~elekl~~el~~~ 933 (1837)
.++-.++.....++..+..++..-..+....+..|..+..++.++...+..+..+.+.+...+......-..+..++..+
T Consensus 202 ~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 202 LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555444333333333333333333333
Q ss_pred HHHHHHHHHH
Q 000221 934 TSKFAEACAS 943 (1837)
Q Consensus 934 ~~kl~e~~~~ 943 (1837)
..++.++...
T Consensus 282 qdkY~E~~~m 291 (306)
T PF04849_consen 282 QDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 110
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.04 E-value=36 Score=46.97 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.8
Q ss_pred ccCCCccccCCCchhhhc
Q 000221 1728 GTLGQKTISPVPSAAHTR 1745 (1837)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~~ 1745 (1837)
.++|+.+..|+|.+++++
T Consensus 1283 ~~l~k~~~k~~~~~~~~~ 1300 (1317)
T KOG0612|consen 1283 QRLVKKIPKPLPAAGSFS 1300 (1317)
T ss_pred HHHhcccCCCCCccccee
Confidence 678888888888876553
No 111
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.02 E-value=19 Score=43.65 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1095 LKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDEL 1155 (1837)
Q Consensus 1095 l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el 1155 (1837)
++.++.-...++.+....+..-.+-......+++.+...+..++.+...|..++......+
T Consensus 214 Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 214 LREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333333344433333333333333444444444444444444444555544443333
No 112
>PF13514 AAA_27: AAA domain
Probab=93.91 E-value=47 Score=47.96 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCcchhhhhhh
Q 000221 404 RDSLKQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIKTENLVASLQETLQQSNLMLEKSEEVLAQIDIPEELQSLD 483 (1837)
Q Consensus 404 ~~~Lk~~l~e~~~el~~~~~ele~~~~~le~~e~l~~eL~~~r~~~~~l~~~~~ek~~~l~~lee~~~~~~~~~~~~~~e 483 (1837)
+..+...+.....++..+..++..+......++.+..-. -...+...+...+..+-.-..+|.... ..
T Consensus 176 y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~-----------p~~~~~~~l~~~l~~l~~~~~~p~~~~-~~ 243 (1111)
T PF13514_consen 176 YQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW-----------PLLAELQQLEAELAELGEVPDFPEDGA-ER 243 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHhcCCcCCCChhHH-HH
Confidence 455555555555555555555555555544444222111 111222223333443323333444422 23
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhHhhHHhhccCCCCCCcchhhHHHHHHHHHHHHHHH
Q 000221 484 MVERIKWLVSERHELKGISLDFYKLKDAVSLIDVPETGSFSDLESRLAWLKESFYQA 540 (1837)
Q Consensus 484 l~ek~e~L~e~~~el~~~~~el~~l~e~l~~~~l~~~~~~~ele~ei~~L~~~l~~~ 540 (1837)
+..-...+......+.....++..+...+..+.++.. +......|..|......+
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~--ll~~~~~I~~L~~~~~~~ 298 (1111)
T PF13514_consen 244 LEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEE--LLAHAAEIEALEEQRGEY 298 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHhhHHHHHHHHHHHHHH
Confidence 3333444445555677777777778777776643322 233455565555444443
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.85 E-value=32 Score=45.72 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000221 1334 NDATVLLSACIDATRELQF 1352 (1837)
Q Consensus 1334 ~~l~~l~~~~~~~~~~le~ 1352 (1837)
.++..+-..+.+.++.|+.
T Consensus 751 ~ema~t~aAI~~A~~rie~ 769 (980)
T KOG0980|consen 751 IEMAETDAAIEDAVSRIEA 769 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 114
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.34 E-value=23 Score=42.52 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 864 EQELGNVKQEASALASELAETQSTMKSLEDAL 895 (1837)
Q Consensus 864 e~el~~lk~eie~l~~el~e~~~~i~~l~~el 895 (1837)
......+..++..+...+.+++..+.-+...+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 33344444444444444444444444443333
No 115
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.30 E-value=11 Score=39.72 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhhhHHH
Q 000221 1129 VLEGEKRISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHMKDERL 1185 (1837)
Q Consensus 1129 ~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~ledlq~~~~d~~~ 1185 (1837)
.+..++..+...+..+..........+......-...+..|..++.++...+.|+..
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555666666666665555555443
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.02 E-value=56 Score=43.72 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 953 VAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLED 1005 (1837)
Q Consensus 953 ~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~ 1005 (1837)
.++.++..+.+.-..+..-++=.-..++.+..++.+++.++...+...+.|..
T Consensus 644 kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNs 696 (717)
T PF09730_consen 644 KLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNS 696 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444433333333333333345666666666666666555544444433
No 117
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.82 E-value=52 Score=42.91 Aligned_cols=20 Identities=35% Similarity=0.213 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 000221 661 LQTMQSLLYVSYQELILCQQ 680 (1837)
Q Consensus 661 ~~rl~~~i~~l~~e~~~~~~ 680 (1837)
+.+.+.++-++..++..+..
T Consensus 57 n~~~~s~~~~~~~~l~~Lqn 76 (716)
T KOG4593|consen 57 NITSKSLLMQLEDELMQLQN 76 (716)
T ss_pred cchhHHHHHHHHHHHHHHhh
Confidence 34444444444444444443
No 118
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=91.55 E-value=48 Score=41.93 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhHHHHHHH
Q 000221 749 ENLKLQLDEKNSEIEKLKLNLQEQE------------STISECRDQINRLSNDLDCIRKM 796 (1837)
Q Consensus 749 ~~Lk~~i~el~~ele~lk~el~~~e------------~el~el~~~l~~L~~~~e~~~~l 796 (1837)
..+-..++.+..+++++...+.... .-+...+..+..|...+++++.+
T Consensus 160 ~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L 219 (570)
T COG4477 160 HQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSL 219 (570)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554332 22344555555555555555544
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.47 E-value=29 Score=39.26 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 000221 1033 VLELEQVREEFVSQTS 1048 (1837)
Q Consensus 1033 e~ele~l~~E~~~~~~ 1048 (1837)
+..++.+..++..+..
T Consensus 142 eekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.17 E-value=30 Score=38.88 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000221 888 MKSLEDALSVAEDKITQLADEK 909 (1837)
Q Consensus 888 i~~l~~el~~l~~~l~~l~~e~ 909 (1837)
+..+..++..+...+..+..+.
T Consensus 14 i~~L~n~l~elq~~l~~l~~EN 35 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKEN 35 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 121
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.13 E-value=31 Score=39.00 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000221 1116 MEDALLKAKNDISVLEGEKR 1135 (1837)
Q Consensus 1116 le~~l~~~~~~i~~Le~e~~ 1135 (1837)
++..+.+.+-.+.+|+..+.
T Consensus 166 Lqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 122
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.76 E-value=24 Score=37.08 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQ 770 (1837)
Q Consensus 691 el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~ 770 (1837)
++..+..++..+..........+..+..++......+.....+|..-.-......+.+..++..+..+...+..++....
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555666666666666666666665554333333345555555555555555555555444
Q ss_pred HHHHHH
Q 000221 771 EQESTI 776 (1837)
Q Consensus 771 ~~e~el 776 (1837)
.....+
T Consensus 84 ~a~~~l 89 (132)
T PF07926_consen 84 SAKAEL 89 (132)
T ss_pred HHHHHH
Confidence 444443
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.47 E-value=41 Score=39.26 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000221 974 AAVVELEQVREE 985 (1837)
Q Consensus 974 ~le~ele~l~~e 985 (1837)
....+++.++.+
T Consensus 77 ~~~~eik~l~~e 88 (265)
T COG3883 77 QSKAEIKKLQKE 88 (265)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 124
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.89 E-value=24 Score=40.46 Aligned_cols=68 Identities=24% Similarity=0.286 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 742 KGLFQDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRLSNDLDCIRKMEADLIAMKDERNQFEH 812 (1837)
Q Consensus 742 ~~l~~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~~L~~~~e~~~~le~el~~l~~eleel~~ 812 (1837)
..+..+...|-..++.+...-.++.+++...+..+.-++.++..... .++.++.++..++.+++....
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk---qie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK---QIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666667777777777776666666655543 334455666666665554443
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.23 E-value=40 Score=38.78 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000221 397 GKALVQQRDSLKQSLADKTIELEKCLAELQEK 428 (1837)
Q Consensus 397 ~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~ 428 (1837)
...|..+..+.+..|+.++.++.+|..++++.
T Consensus 97 v~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 126
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.22 E-value=33 Score=41.59 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Q 000221 375 ELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAEL-SKEEFIKTENLVASLQ 453 (1837)
Q Consensus 375 ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~~e~-l~~eL~~~r~~~~~l~ 453 (1837)
++..+..++......+.........+..+...+...|+....++..+..++...+...+.... ...+...++.....|+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555566666666666666666666666655554444332 2444444444444443
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.84 E-value=85 Score=40.59 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 000221 1258 FRKTAEGFQMR 1268 (1837)
Q Consensus 1258 ~~~~~e~~~~~ 1268 (1837)
+...++-|+..
T Consensus 483 i~~qRdrfr~~ 493 (629)
T KOG0963|consen 483 ISSQRDRFRAR 493 (629)
T ss_pred hhcccchhhhh
Confidence 33344444443
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.80 E-value=6.1 Score=44.50 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000221 1142 SALNSKLN 1149 (1837)
Q Consensus 1142 ~~l~~kl~ 1149 (1837)
..+..++.
T Consensus 161 ~~~e~k~~ 168 (194)
T PF08614_consen 161 NMLEEKLR 168 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=87 Score=39.43 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 361 MVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE 436 (1837)
Q Consensus 361 ~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~~e 436 (1837)
.++.++.++..++.++.+ ....+-.+..-+-.+..+...|++++++++.+.+-++.+++.....+....
T Consensus 9 ~ve~lr~eierLT~el~q-------~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQ-------TTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 333333444445667778888999999999999999999999888887755
No 130
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.73 E-value=0.23 Score=57.44 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=42.4
Q ss_pred ccccccccccccccccCCCchhhhhhccceeecccccccCchhhHHHHHHHHHHHHHHhhh
Q 000221 1775 DKGHVFKSLNTLGLIPRQGKMVADRIDGIWVSGGRLLMSRPGTRLGLIAYSLLLHIWLLGT 1835 (1837)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1835 (1837)
++.|-|.+.+..--..+..+ +-..|-++.|++|+++..+..|..+++|+++||+|+|.+
T Consensus 178 ~~l~PF~~F~~~E~~R~~~~--L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~ 236 (248)
T PF08172_consen 178 ESLNPFAAFRKRERQRRYKR--LSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFV 236 (248)
T ss_pred hccChHHHHhHhhHHHHHhc--CChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHH
Confidence 44666655444332222111 233666789999999999999999999999999999975
No 131
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.78 E-value=58 Score=36.44 Aligned_cols=16 Identities=31% Similarity=0.437 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 000221 999 TIKSLEDSLAQVEANV 1014 (1837)
Q Consensus 999 ~l~~Le~~l~~le~el 1014 (1837)
.|+-|..++.+.+.++
T Consensus 11 EIsLLKqQLke~q~E~ 26 (202)
T PF06818_consen 11 EISLLKQQLKESQAEV 26 (202)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 132
>PF13514 AAA_27: AAA domain
Probab=86.65 E-value=1.9e+02 Score=42.07 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 288 KYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVENLSHLENENRKL 351 (1837)
Q Consensus 288 kY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~kl~~le~e~~~l 351 (1837)
.|+.+..+|+.+...+-..... . ..|..+...+......+..+..++..+..+...+
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~---~----~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l 207 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVR---A----AEYQELQQALEEAEEELEELRAELKELRAELRRL 207 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444332 1 2255555555555555555555555544444333
No 133
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.39 E-value=63 Score=41.22 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 979 LEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIK 1058 (1837)
Q Consensus 979 le~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~ 1058 (1837)
.+.+.-++.-+..++......|.+|+..+...+.++....+-+. ..-..+.+++.+-=++-.++..++.+++.+..+-.
T Consensus 120 kesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ-qellsrtsLETqKlDLmaevSeLKLkltalEkeq~ 198 (861)
T KOG1899|consen 120 KESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ-QELLSRTSLETQKLDLMAEVSELKLKLTALEKEQN 198 (861)
T ss_pred hhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH-HHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhh
Confidence 33333333344444444444444444444444444433322110 00011233444444445555555555555554444
Q ss_pred HHHHHHHHHHHHHH
Q 000221 1059 SLEDALSQVEANVA 1072 (1837)
Q Consensus 1059 ~L~~el~~~e~~~~ 1072 (1837)
+.++.+...+..++
T Consensus 199 e~E~K~R~se~l~q 212 (861)
T KOG1899|consen 199 ETEKKLRLSENLMQ 212 (861)
T ss_pred hHHHHHHhHHHHHH
Confidence 44444443433333
No 134
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=85.33 E-value=1.4e+02 Score=39.35 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1034 LELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTI 1113 (1837)
Q Consensus 1034 ~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~ 1113 (1837)
.-|...++.++.+.-++. ..--.....+..+...+.+|..++.....+..-|...|.....++.-- .-..
T Consensus 306 ~LL~~WREKVFaLmVQLk---aQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevE-------Rv~s 375 (739)
T PF07111_consen 306 QLLSRWREKVFALMVQLK---AQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVE-------RVGS 375 (739)
T ss_pred HHHHHHHHHHHHHHHHhh---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHhh
Confidence 345556666666655542 222222333444555555555555555555555554444333332111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1114 KSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1114 ~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
+.+...+..+......+.......+..+..+...+..+..
T Consensus 376 ktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~ 415 (739)
T PF07111_consen 376 KTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444444444444444444444444444443333
No 135
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.15 E-value=1e+02 Score=37.78 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000221 856 CHDTKTQLEQELGNV 870 (1837)
Q Consensus 856 lq~~l~~~e~el~~l 870 (1837)
+...+..+......+
T Consensus 154 L~~~~~~L~~D~~~L 168 (325)
T PF08317_consen 154 LEENLELLQEDYAKL 168 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 136
>PRK11281 hypothetical protein; Provisional
Probab=85.02 E-value=2e+02 Score=41.04 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000221 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDELAGTIGS 1161 (1837)
Q Consensus 1115 ~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el~~~~~~ 1161 (1837)
.+.+.+.....++..+..+.......+..+......+.+.+.-+.|.
T Consensus 289 ~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s 335 (1113)
T PRK11281 289 QLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGS 335 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444445555555555555555555555555555444444444443
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.26 E-value=46 Score=41.15 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1072 AVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLA 1107 (1837)
Q Consensus 1072 ~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~ 1107 (1837)
..++....+....+..+...|..+.+++......++
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443
No 138
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.20 E-value=1.1e+02 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 762 IEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 762 le~lk~el~~~e~el~el~~~l~~L 786 (1837)
++-....+.++...+.+.+..+.++
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~ 94 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEI 94 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 139
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.02 E-value=1.3e+02 Score=39.25 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000221 851 SYINECHDTKTQLEQELGN 869 (1837)
Q Consensus 851 ~~~~elq~~l~~~e~el~~ 869 (1837)
..+..++..+...+..+..
T Consensus 168 ~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334333333333333
No 140
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.82 E-value=84 Score=35.64 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000221 1064 LSQVEANVAVLTEQNNVLQVGKTTLEN 1090 (1837)
Q Consensus 1064 l~~~e~~~~~l~~el~~le~~~~eLe~ 1090 (1837)
+..+.-+...+...+..++.+..+|..
T Consensus 102 l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444433
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.51 E-value=39 Score=34.74 Aligned_cols=90 Identities=23% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 000221 335 EESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADK 414 (1837)
Q Consensus 335 ~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~ 414 (1837)
..+...+..++.++..++.++..+....+.+..++..+....+.+ ......+..+...+..|..+++.+-+-+=++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 345555667777777777777777777777777777777766665 2333444555556666666677776666666
Q ss_pred HHHHHHHHHHHHHH
Q 000221 415 TIELEKCLAELQEK 428 (1837)
Q Consensus 415 ~~el~~~~~ele~~ 428 (1837)
..+.+.+...+..+
T Consensus 95 ~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 95 SEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665555554
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.43 E-value=1.4e+02 Score=37.92 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 000221 1074 LTEQNNVLQVGKTTLENE 1091 (1837)
Q Consensus 1074 l~~el~~le~~~~eLe~e 1091 (1837)
+..++...+..+..++..
T Consensus 251 ~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 251 AQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 143
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.30 E-value=1.3e+02 Score=37.38 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000221 757 EKNSEIEKLKLNLQEQESTI 776 (1837)
Q Consensus 757 el~~ele~lk~el~~~e~el 776 (1837)
.+..+++.++.....+...+
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i 287 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKI 287 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 144
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.01 E-value=1.1e+02 Score=36.50 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 925 KAIEEAHIQTSKFAEACASRKSLEDEMSVAKN 956 (1837)
Q Consensus 925 kl~~el~~~~~kl~e~~~~i~~le~~l~~l~~ 956 (1837)
.+..+...++..+.-....+..|...+..+..
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444433333
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.83 E-value=54 Score=33.75 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000221 1064 LSQVEANVAVLTEQNNVLQVGKTTLENELQMLKD 1097 (1837)
Q Consensus 1064 l~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~ 1097 (1837)
|...+.++..+..++..+......+..++-.+..
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.78 E-value=16 Score=41.07 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1106 LADAHTTIKSMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1837)
Q Consensus 1106 l~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~ 1150 (1837)
+.+....+..+.+++..+.-.+..++..+..++.+-..|-.++-.
T Consensus 139 l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444455555443
No 147
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.77 E-value=1.5e+02 Score=37.69 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 979 LEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAMLTE 1019 (1837)
Q Consensus 979 le~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l~e 1019 (1837)
+..++.....+.+........+++++-.+.+-..++..+..
T Consensus 361 l~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 361 LIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444433333
No 148
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=1.5e+02 Score=37.46 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 746 QDRENLKLQLDEKNSEIEKLKLNLQEQESTISECRDQIN 784 (1837)
Q Consensus 746 ~e~~~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~ 784 (1837)
.+...|++.++++..+.+.++.++......+..+.....
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk 81 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK 81 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777766666665555443
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.80 E-value=1.2e+02 Score=42.12 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 000221 874 ASALASELAETQSTMK 889 (1837)
Q Consensus 874 ie~l~~el~e~~~~i~ 889 (1837)
...+..++..++.++.
T Consensus 196 ~~~L~~ql~~l~~~l~ 211 (754)
T TIGR01005 196 ADFLAPEIADLSKQSR 211 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444333333
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.49 E-value=1.5e+02 Score=36.93 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000221 947 LEDEMSV 953 (1837)
Q Consensus 947 le~~l~~ 953 (1837)
+...+..
T Consensus 395 Lqe~la~ 401 (527)
T PF15066_consen 395 LQEALAN 401 (527)
T ss_pred HHHHHHH
Confidence 3333333
No 151
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=81.43 E-value=85 Score=34.04 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 975 AVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANVAML 1017 (1837)
Q Consensus 975 le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el~~l 1017 (1837)
+..++..++.++..+...+......+..|+..-..+...+..+
T Consensus 25 ~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 25 ARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544444455554444444444333
No 152
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.03 E-value=1.7e+02 Score=38.41 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=11.6
Q ss_pred cccccccccccccCCCchhhhhhcc
Q 000221 1778 HVFKSLNTLGLIPRQGKMVADRIDG 1802 (1837)
Q Consensus 1778 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1802 (1837)
.+|++-++..+=|...+|.--..||
T Consensus 874 ~~fr~~~~~s~g~p~~p~~k~~~d~ 898 (916)
T KOG0249|consen 874 ANFRAGTTGSLGPPSAPPRKMQPDA 898 (916)
T ss_pred CCccccccccCCCCCCCcccCCccc
Confidence 4566555544444444444333333
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.72 E-value=1.5e+02 Score=40.95 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000221 849 IASYINECHDTKTQLEQELGNVK 871 (1837)
Q Consensus 849 ~~~~~~elq~~l~~~e~el~~lk 871 (1837)
+...+..+...+...+.++...+
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 154
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.75 E-value=1e+02 Score=38.81 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 852 YINECHDTKTQLEQELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKRQV 912 (1837)
Q Consensus 852 ~~~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~~l 912 (1837)
.+..+-+.+......+..+..++.....++......+..+..+|.++..++.-+.-+++.+
T Consensus 199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 199 LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555555555554444444433
No 155
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.85 E-value=1.2e+02 Score=34.32 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.3
Q ss_pred hhhhHHHHHHH
Q 000221 1160 GSLESRSVELI 1170 (1837)
Q Consensus 1160 ~~le~~~~eL~ 1170 (1837)
..++....+|.
T Consensus 157 ~~lE~keaqL~ 167 (201)
T PF13851_consen 157 EQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 156
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.60 E-value=72 Score=36.84 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 000221 940 ACASRKSLEDE 950 (1837)
Q Consensus 940 ~~~~i~~le~~ 950 (1837)
+...|..++..
T Consensus 58 I~~DIn~lE~i 68 (230)
T PF10146_consen 58 INQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 157
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.59 E-value=35 Score=31.83 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1047 TSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTI 1113 (1837)
Q Consensus 1047 ~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~ 1113 (1837)
..++..+-.+|.-|+-++..++.....+..+...+......|..+...++.+...|..++..+-+.+
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555666667777777777777777777777788888888888888888887777665544
No 158
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.48 E-value=1.1e+02 Score=33.77 Aligned_cols=115 Identities=23% Similarity=0.177 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhh
Q 000221 320 FAAARDELLNLKRREEESVENLSHLENENRKLV-EQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGK 398 (1837)
Q Consensus 320 l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~-~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~ 398 (1837)
+..+.-.+..++..+..+..++...+.--+.+. ..+..++.....+...|.+...++..+...+...-.-+.+.-.+..
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666555544333333 4455555555555555555555555555555544444555555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000221 399 ALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQA 434 (1837)
Q Consensus 399 ~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~ 434 (1837)
.+......++..|......+.+++.++..+......
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666655555444443
No 159
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.44 E-value=1.3e+02 Score=34.27 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHH-----
Q 000221 333 REEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSL----- 407 (1837)
Q Consensus 333 ~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~L----- 407 (1837)
++.++..+...++..+..+..+....+...+.-..+.......++. .+..++.-...+.+.++.|.+..+-|
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Led---dlsqt~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLED---DLSQTHAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 3444444445555555555555555554444443333332222222 22222222222222223333333222
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000221 408 --KQSLADKTIELEKCLAELQEKSSALQAAELSKEEFIKTENLVASLQET 455 (1837)
Q Consensus 408 --k~~l~e~~~el~~~~~ele~~~~~le~~e~l~~eL~~~r~~~~~l~~~ 455 (1837)
.=.+++.+..+..+-....-++..+..-+.+...+..++..+-.|.+.
T Consensus 130 ati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqe 179 (333)
T KOG1853|consen 130 ATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQE 179 (333)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444444444444444444444444444433
No 160
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.76 E-value=81 Score=39.04 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 000221 1138 DQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHMKDERLLSAVKSCFERKIEGLQNM 1203 (1837)
Q Consensus 1138 e~e~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~ledlq~~~~d~~~~~~~~~~~~~k~~~l~~~ 1203 (1837)
...+......+.....+++.+..+++..+.+ +++..+-+.|..++-.+.+++.+=...+.+|
T Consensus 286 ~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e----meerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 286 QEKYKQASEGVSERTRELAEISEELEQVKQE----MEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334444444444333332 3333345566666666666654444444444
No 161
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.75 E-value=1.5e+02 Score=37.29 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000221 1049 KLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDE 1098 (1837)
Q Consensus 1049 ~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~E 1098 (1837)
++.+++.++..+..+|...-.+.....+++-.+...+.+++.++..+.-+
T Consensus 206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E 255 (596)
T KOG4360|consen 206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE 255 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333444444444443333333333333333344444444443333333
No 162
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.01 E-value=1.4e+02 Score=34.04 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 000221 1049 KLTEAYTTIKSLEDAL 1064 (1837)
Q Consensus 1049 ~l~~~~~~i~~L~~el 1064 (1837)
.+......++.++.+|
T Consensus 185 ele~tk~Klee~Qnel 200 (330)
T KOG2991|consen 185 ELEQTKDKLEEAQNEL 200 (330)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333344444444444
No 163
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.42 E-value=1.4e+02 Score=34.93 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1116 MEDALLKAKNDISVLEGEKRISDQEVSALNSKLNA 1150 (1837)
Q Consensus 1116 le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~ 1150 (1837)
|...+..+...+..+.........+...|..++..
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443
No 164
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.81 E-value=2.5e+02 Score=35.80 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1087 TLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKA 1123 (1837)
Q Consensus 1087 eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~ 1123 (1837)
.+-..+.+.++++.....++......+.+.+..+..+
T Consensus 518 el~~alektkQel~~tkarl~stqqslaEke~HL~nL 554 (654)
T KOG4809|consen 518 ELMNALEKTKQELDATKARLASTQQSLAEKEAHLANL 554 (654)
T ss_pred HHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555554444444444443333
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.02 E-value=1.7e+02 Score=34.37 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1033 VLELEQVREEFVSQTSKLTEAYTTIKSLEDA 1063 (1837)
Q Consensus 1033 e~ele~l~~E~~~~~~~l~~~~~~i~~L~~e 1063 (1837)
+..+..+..+.......+......+..|...
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek 41 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEK 41 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333333
No 166
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=74.02 E-value=3e+02 Score=36.41 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000221 1002 SLEDSLAQVEANVAMLTE 1019 (1837)
Q Consensus 1002 ~Le~~l~~le~el~~l~e 1019 (1837)
++..++..+..+.+.+..
T Consensus 475 dL~~ELqqLReERdRl~a 492 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDA 492 (739)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 167
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.82 E-value=2.1e+02 Score=34.44 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000221 1324 EHEEAMVMLQNDATV 1338 (1837)
Q Consensus 1324 ~~ee~l~~le~~l~~ 1338 (1837)
.....+-.|-.++..
T Consensus 256 ~f~~~v~lLn~nI~~ 270 (302)
T PF10186_consen 256 RFEYAVFLLNKNIAQ 270 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 168
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.77 E-value=3.3e+02 Score=36.80 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 000221 528 SRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEIDRLSASLSAELQEKDYNQKELNDLLCKYEEIVEKANKISLEKDHM 607 (1837)
Q Consensus 528 ~ei~~L~~~l~~~~~e~~~l~~el~~~l~~~~~ei~~L~~~l~~~~~ek~~l~~el~~l~~e~~~l~~~~~~~~~e~~~~ 607 (1837)
.++..|...+..+.++...++.- .+..+.+.+++-..+..+..+|+--+...+.|..+...+.+.+.......+-+
T Consensus 276 ~qqa~Lqrel~raR~e~keaqe~----ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 276 EQQADLQRELKRARKEAKEAQEA----KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444433 44455566666666677777777666667777777777777777666663333
Q ss_pred HHH
Q 000221 608 VRV 610 (1837)
Q Consensus 608 ~~~ 610 (1837)
..+
T Consensus 352 KaE 354 (1243)
T KOG0971|consen 352 KAE 354 (1243)
T ss_pred HHH
Confidence 333
No 169
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=73.57 E-value=1.8e+02 Score=33.75 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 928 EEAHIQTSKFAEACASRKSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKL 993 (1837)
Q Consensus 928 ~el~~~~~kl~e~~~~i~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl 993 (1837)
.+.......+..+...+..|++.+......-...=.....+...+......+..++..+......+
T Consensus 142 ~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y 207 (239)
T PF05276_consen 142 REHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRY 207 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554444333333333333344444444444444444444443333
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.48 E-value=1.4e+02 Score=37.07 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=7.7
Q ss_pred HHHHHHHHHHh
Q 000221 635 IISKCIGKIRE 645 (1837)
Q Consensus 635 ~~~~~~~~l~~ 645 (1837)
+|+.|++++-.
T Consensus 177 TCpVCLERMD~ 187 (493)
T KOG0804|consen 177 TCPVCLERMDS 187 (493)
T ss_pred CcchhHhhcCc
Confidence 47778777754
No 171
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.17 E-value=1.9e+02 Score=32.92 Aligned_cols=60 Identities=22% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1057 IKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSM 1116 (1837)
Q Consensus 1057 i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~l 1116 (1837)
+..|+..++.+..-...+..-+..++....+|+..-....--+..+..++..+.....-|
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfL 152 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFL 152 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555443333333344444444433333333
No 172
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.07 E-value=3.3e+02 Score=35.96 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=11.1
Q ss_pred HHhhhcCchhhhhhhccccchHHHHH
Q 000221 1622 VNMLESNEFVVNQKSSGSKGLLAVLE 1647 (1837)
Q Consensus 1622 I~~L~~~~A~~~~~~a~~~gel~~Le 1647 (1837)
+..+|...-...-..+|+.|-+-.|+
T Consensus 770 V~~igL~eya~NL~eSGVHGaLlaLd 795 (916)
T KOG0249|consen 770 VQSIGLGEYANNLKESGVHGALLALD 795 (916)
T ss_pred HHhcCHHHHhhhhhhhcccceeeeec
Confidence 44555433222333345555444443
No 173
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.83 E-value=2.4e+02 Score=33.86 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 000221 1093 QMLKDEAGSQAVKL 1106 (1837)
Q Consensus 1093 ~~l~~El~~~~~kl 1106 (1837)
..+..++..++..+
T Consensus 232 ~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 232 RSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 174
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=70.64 E-value=3.2e+02 Score=35.31 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=7.4
Q ss_pred cccccccccccc
Q 000221 1775 DKGHVFKSLNTL 1786 (1837)
Q Consensus 1775 ~~~~~~~~~~~~ 1786 (1837)
++..+|+|++.+
T Consensus 849 ~~~sgfess~~~ 860 (861)
T KOG1899|consen 849 GDNSGFESSNVS 860 (861)
T ss_pred ccccccccCCCC
Confidence 445678876654
No 175
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.63 E-value=56 Score=39.80 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000221 396 KGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQAAE 436 (1837)
Q Consensus 396 ~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~~e 436 (1837)
....+++.+..+.-++.....+...+...+......++.++
T Consensus 93 eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 93 EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666666666666666666666666666666666555
No 176
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=70.06 E-value=1.7e+02 Score=31.82 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 865 QELGNVKQEASALASELAETQSTMKSLEDALSVAEDKITQLADEKR 910 (1837)
Q Consensus 865 ~el~~lk~eie~l~~el~e~~~~i~~l~~el~~l~~~l~~l~~e~~ 910 (1837)
.++..++.++..+...+..+-..++.+...-..++..+......+.
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444555555555555555555544445555555444443
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.59 E-value=2.7e+02 Score=33.94 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 762 IEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 762 le~lk~el~~~e~el~el~~~l~~L 786 (1837)
++-....+.++...|.+-+..+.++
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~ 89 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEI 89 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.10 E-value=33 Score=38.93 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhhHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhhhHHHHHHHHHHHHHHH
Q 000221 1257 CFRKTAEGFQMRTKILTDTFEHFSVSIDEFIAALLRKLQTTRDEVVRMTQCMDSLRGKVKNLEGCKQEHEEAMVMLQNDA 1336 (1837)
Q Consensus 1257 ~~~~~~e~~~~~~~~L~~~~~~~~~~idq~i~~L~~~l~~l~~~~~~l~~e~e~l~~eL~~l~~~~~~~ee~l~~le~~l 1336 (1837)
.++..+..++.+...|+.++.+.....++....+.+++....+....+..++..|+.++..++.+...++..+..++++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999888888777777777777777777777777777777777777777777777777666666655
Q ss_pred H
Q 000221 1337 T 1337 (1837)
Q Consensus 1337 ~ 1337 (1837)
.
T Consensus 170 ~ 170 (206)
T PRK10884 170 I 170 (206)
T ss_pred H
Confidence 3
No 179
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.00 E-value=82 Score=29.35 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1064 LSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTT 1112 (1837)
Q Consensus 1064 l~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~ 1112 (1837)
+..++.++..+..+...+......|..+...++.+...|..++..+-+.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444555555555555555555555555544433
No 180
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.92 E-value=90 Score=29.30 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRDEL 1155 (1837)
Q Consensus 1115 ~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~el 1155 (1837)
.+......+......|..+...+..+...+..++..+...+
T Consensus 36 ~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 36 SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444445556666666666677777776655433
No 181
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.65 E-value=96 Score=28.06 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1052 EAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHT 1111 (1837)
Q Consensus 1052 ~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~ 1111 (1837)
.+-.+|.-|+-++..+....+.+..+.......+..|+++-..++.+-..|..++..+-+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555666666666666666666666666666666666666655554443
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.39 E-value=2.4e+02 Score=35.21 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhh
Q 000221 1144 LNSKLNACRDELAGTIGSLESRSVELIGHLND 1175 (1837)
Q Consensus 1144 l~~kl~~l~~el~~~~~~le~~~~eL~~~led 1175 (1837)
+..++..+........+........|+..+.|
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333444444444
No 183
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.94 E-value=3.2e+02 Score=32.73 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000221 1038 QVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEA 1099 (1837)
Q Consensus 1038 ~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El 1099 (1837)
++..++.....-+....+....++.-+..+.++...++-+++.+..+..+.+.+-..++.|+
T Consensus 110 kL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 110 KLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 33444444444344444444444444444445555555555555554444444444444443
No 184
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.90 E-value=5.6e+02 Score=35.54 Aligned_cols=14 Identities=0% Similarity=-0.182 Sum_probs=6.6
Q ss_pred ccccccccccchhh
Q 000221 1240 EMYDNEVTVLDADD 1253 (1837)
Q Consensus 1240 el~~~~~~~~~~~~ 1253 (1837)
.|++..-.+++++-
T Consensus 956 ~L~sh~QSGGERSV 969 (1072)
T KOG0979|consen 956 VLDSHRQSGGERSV 969 (1072)
T ss_pred cccccccCCcchHH
Confidence 34444444555443
No 185
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.00 E-value=14 Score=44.28 Aligned_cols=6 Identities=50% Similarity=0.706 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000221 1000 IKSLED 1005 (1837)
Q Consensus 1000 l~~Le~ 1005 (1837)
+.+|+.
T Consensus 142 ItdLe~ 147 (326)
T PF04582_consen 142 ITDLES 147 (326)
T ss_dssp HHHHHH
T ss_pred HhhHHH
Confidence 333333
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.99 E-value=1.3e+02 Score=38.90 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 691 QLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQ 770 (1837)
Q Consensus 691 el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~ 770 (1837)
.+..+......+..++..|+..+.++..+++.++.++..++..+.... .....+..+...|..|..+|.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~-----------~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV-----------RKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555544433221 112233344445555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000221 771 EQESTISECRDQINRLS 787 (1837)
Q Consensus 771 ~~e~el~el~~~l~~L~ 787 (1837)
.....+..++.++..+.
T Consensus 492 e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 492 EKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 187
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.98 E-value=1.6e+02 Score=29.06 Aligned_cols=36 Identities=17% Similarity=-0.051 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000221 945 KSLEDEMSVAKNNMSVLICEKEEAQASGAAAVVELE 980 (1837)
Q Consensus 945 ~~le~~l~~l~~el~~l~~eie~l~~~~~~le~ele 980 (1837)
..++..+..+..++.....++-.+...+..+..++.
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k 62 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK 62 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 188
>PRK11281 hypothetical protein; Provisional
Probab=62.83 E-value=6.7e+02 Score=36.11 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.6
Q ss_pred ceeccccc
Q 000221 1755 LTINIDSE 1762 (1837)
Q Consensus 1755 ~~~~~~~~ 1762 (1837)
+.+.|++.
T Consensus 996 v~i~vgV~ 1003 (1113)
T PRK11281 996 VVIKVGVA 1003 (1113)
T ss_pred EEEEEEeC
Confidence 44444443
No 189
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.20 E-value=4.3e+02 Score=33.04 Aligned_cols=7 Identities=43% Similarity=0.914 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 000221 637 SKCIGKI 643 (1837)
Q Consensus 637 ~~~~~~l 643 (1837)
.+|+..|
T Consensus 38 vrcL~~I 44 (521)
T KOG1937|consen 38 VRCLWKI 44 (521)
T ss_pred HHHHHhc
Confidence 3333333
No 190
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.45 E-value=3e+02 Score=31.02 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 852 YINECHDTKTQLEQELGNVKQEASALASELAETQSTM 888 (1837)
Q Consensus 852 ~~~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i 888 (1837)
+|.=++..+.....++..--.+|-.+...+.+....+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l 47 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAEL 47 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333334433333333333
No 191
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.34 E-value=1e+02 Score=34.43 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1115 SMEDALLKAKNDISVLEGEKRISDQEVSALNSKLN 1149 (1837)
Q Consensus 1115 ~le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~ 1149 (1837)
..++.++.+....+.|+..+..+-.++..|+.++.
T Consensus 167 e~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 167 EVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 33333444444444444444444444444444444
No 192
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.03 E-value=1.6e+02 Score=27.58 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1127 ISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1127 i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
...|..+...+..+...+..++..+..
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555544443
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.27 E-value=1.4e+02 Score=38.65 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 750 NLKLQLDEKNSEIEKLKLNLQEQESTISECRDQINRL 786 (1837)
Q Consensus 750 ~Lk~~i~el~~ele~lk~el~~~e~el~el~~~l~~L 786 (1837)
.+...+..+..++..|+..+..+..++..++.++..+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444333333343343333333
No 194
>PF15294 Leu_zip: Leucine zipper
Probab=56.74 E-value=3.8e+02 Score=31.85 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 687 LVRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLR 731 (1837)
Q Consensus 687 ~~~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lk 731 (1837)
++..++.+|..+...+...+..++.....+-.+-..++..+..++
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444444444444444444444443
No 195
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=56.09 E-value=4.5e+02 Score=31.94 Aligned_cols=12 Identities=50% Similarity=0.495 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 000221 1034 LELEQVREEFVS 1045 (1837)
Q Consensus 1034 ~ele~l~~E~~~ 1045 (1837)
.++++++.+-..
T Consensus 363 RELekLreEKdr 374 (593)
T KOG4807|consen 363 RELEKLREEKDR 374 (593)
T ss_pred HHHHHHHHHHHh
Confidence 334444443333
No 196
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=54.90 E-value=6.2e+02 Score=33.22 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000221 1106 LADAHTTIKSMEDALLKAKNDI 1127 (1837)
Q Consensus 1106 l~e~~~~~~~le~~l~~~~~~i 1127 (1837)
++.+......+.-++..+...+
T Consensus 408 lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 408 LESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHhhhhhccccHHHHHHHH
Confidence 3333333333333444444333
No 197
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.40 E-value=1.7e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1116 MEDALLKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1116 le~~l~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
+..+...++...+.|+.+...+..+-..+..++..+..
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444555556666666666666666665543
No 198
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.35 E-value=1.6e+02 Score=35.57 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 689 RLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLN 768 (1837)
Q Consensus 689 ~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~e 768 (1837)
...+..++.+++.+......|..+...+..++..+..++..+.+.+... .+.+.++..+++.++..
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~--------------~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQL--------------QREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3445555666666666667777777777666666666666665554444 22333334445555555
Q ss_pred HHHHHHHHHHHHHHH
Q 000221 769 LQEQESTISECRDQI 783 (1837)
Q Consensus 769 l~~~e~el~el~~~l 783 (1837)
+..+..++..++..+
T Consensus 149 ~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 149 HDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554444444
No 199
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.33 E-value=1.6e+02 Score=33.42 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 000221 579 NQKELNDLLCKYEEIVEKAN 598 (1837)
Q Consensus 579 l~~el~~l~~e~~~l~~~~~ 598 (1837)
|..+...++.++..++.++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433333333
No 200
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.85 E-value=4.1e+02 Score=31.21 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000221 761 EIEKLKLNLQEQESTISECRDQINRLSNDLDCI--RKMEADLIAMKDERNQFEHFLLESNNMLQKVLETVDRIIL 833 (1837)
Q Consensus 761 ele~lk~el~~~e~el~el~~~l~~L~~~~e~~--~~le~el~~l~~eleel~~~l~e~~~~l~rl~~~i~~l~~ 833 (1837)
-|-+|+..|.+.+..+.+-..+|.+|..++.+. +|++.+.-... ++-.|.++..++.+++..|+.+..
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE-----AQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE-----AQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444433332 35555443333 333345555566666666665544
No 201
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=51.46 E-value=9.7e+02 Score=34.48 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.8
Q ss_pred hhhhcc
Q 000221 1797 ADRIDG 1802 (1837)
Q Consensus 1797 ~~~~~~ 1802 (1837)
.+|=||
T Consensus 1033 ~~fgds 1038 (1109)
T PRK10929 1033 VDLQQG 1038 (1109)
T ss_pred EecCCC
Confidence 344454
No 202
>PRK10869 recombination and repair protein; Provisional
Probab=49.47 E-value=7.7e+02 Score=32.72 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=3.5
Q ss_pred HHHHhhhhh
Q 000221 1168 ELIGHLNDL 1176 (1837)
Q Consensus 1168 eL~~~ledl 1176 (1837)
.+..++.+|
T Consensus 378 ~v~~~L~~L 386 (553)
T PRK10869 378 LITESMHEL 386 (553)
T ss_pred HHHHHHHHc
Confidence 333344443
No 203
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.53 E-value=7e+02 Score=31.36 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 844 EKVNWIASYINECHDTKTQLEQELGNVKQEAS 875 (1837)
Q Consensus 844 eki~~~~~~~~elq~~l~~~e~el~~lk~eie 875 (1837)
..+.++.+.+.+....+..+..+...+..+++
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 204
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=45.87 E-value=7.8e+02 Score=31.72 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000221 810 FEHFLLESNNMLQKVLETVD 829 (1837)
Q Consensus 810 l~~~l~e~~~~l~rl~~~i~ 829 (1837)
+...+......+..+...+.
T Consensus 53 vr~~~~~Q~seL~~l~~ev~ 72 (531)
T PF15450_consen 53 VRARVQLQDSELMQLRQEVK 72 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555444
No 205
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.59 E-value=5.7e+02 Score=30.11 Aligned_cols=211 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000221 804 KDERNQFEHFLLESNNMLQKVLETVDRIILPVNSVFKEPLEKVNWIASYINECHDTKTQ-LEQELGNVKQEASALASELA 882 (1837)
Q Consensus 804 ~~eleel~~~l~e~~~~l~rl~~~i~~l~~~~~~~~~el~eki~~~~~~~~elq~~l~~-~e~el~~lk~eie~l~~el~ 882 (1837)
+..+.++..........-..+...|.............+..+...+++.+.-+...... ++.-...+..--+.....+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000221 883 ETQSTMKSLEDALSVAEDKITQL----ADEKRQVEVGKKNVEEELEKAIEEAHIQTSKFAE-ACASRKSLEDEMSVAKNN 957 (1837)
Q Consensus 883 e~~~~i~~l~~el~~l~~~l~~l----~~e~~~le~~~~~le~elekl~~el~~~~~kl~e-~~~~i~~le~~l~~l~~e 957 (1837)
.++.++..+...+.....+++.| ..++--....+..+...+..+......-...+.+ .......+...+......
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~ 164 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEE 164 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 958 MSV--LICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSLAQVEANV 1014 (1837)
Q Consensus 958 l~~--l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l~~le~el 1014 (1837)
+-. ...-+..........-.+...+..++......+++....+..|..++..+....
T Consensus 165 il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 165 ILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 206
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=44.23 E-value=5.8e+02 Score=29.77 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 841 EPLEKVNWIASYINECHDTKTQLEQELGN 869 (1837)
Q Consensus 841 el~eki~~~~~~~~elq~~l~~~e~el~~ 869 (1837)
.+...+......+..++..+......+..
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~ 110 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIE 110 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 207
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.69 E-value=4.3e+02 Score=27.90 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000221 388 EKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQ 426 (1837)
Q Consensus 388 Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele 426 (1837)
+-+..+..+...+....+.+.+.+..+...++.+...+.
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444444444444444444444444433333
No 208
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.25 E-value=9e+02 Score=31.17 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000221 1030 AAAVLELEQVREEFVSQTSKL 1050 (1837)
Q Consensus 1030 ~~~e~ele~l~~E~~~~~~~l 1050 (1837)
.....++..++..+......+
T Consensus 294 ~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 294 TDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554
No 209
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.19 E-value=5.1e+02 Score=32.54 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHh-hhHHHHHHHHHHHHHHHhH
Q 000221 373 KTELEHEKMKCTGTKEKLSLAVTK-GKALVQQRDSLKQSLADKT 415 (1837)
Q Consensus 373 ~~ele~le~~~~~~~Eki~~~~~~-~~~L~~~~~~Lk~~l~e~~ 415 (1837)
+.++..+++.++...+|+.+...+ .+.++...++....+..++
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666333 5555555555555555444
No 210
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.59 E-value=9.4e+02 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 527 ESRLAWLKESFYQAKDEANVLLDQLNRMKEAARNEID 563 (1837)
Q Consensus 527 e~ei~~L~~~l~~~~~e~~~l~~el~~~l~~~~~ei~ 563 (1837)
+....|+...+.....++...-.++-.+.+++...|.
T Consensus 113 e~~~s~ct~~L~~~N~~l~~~~~~~~~~fek~~~yi~ 149 (518)
T PF10212_consen 113 ECESSLCTAALSARNMELHSDMKRLTAVFEKLQTYIS 149 (518)
T ss_pred hcccccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444444444444444
No 211
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=40.59 E-value=5.5e+02 Score=28.44 Aligned_cols=32 Identities=3% Similarity=0.083 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 854 NECHDTKTQLEQELGNVKQEASALASELAETQ 885 (1837)
Q Consensus 854 ~elq~~l~~~e~el~~lk~eie~l~~el~e~~ 885 (1837)
.++...+...+..+.-+..+++.+...+..+.
T Consensus 60 ~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae 91 (178)
T PF14073_consen 60 QDLSSQLSAAETRCSLLEKQLEYMRKMVESAE 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666655555554443
No 212
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.01 E-value=7e+02 Score=29.52 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 753 LQLDEKNSEIEKLKLNLQEQESTISECRDQIN 784 (1837)
Q Consensus 753 ~~i~el~~ele~lk~el~~~e~el~el~~~l~ 784 (1837)
..+.....+++.+..++...+..+.+++.++.
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~ 231 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERIT 231 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 213
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=39.33 E-value=7e+02 Score=29.35 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=12.2
Q ss_pred hhhhhhHHHHHHHHHHHHHhh
Q 000221 1177 QMHMKDERLLSAVKSCFERKI 1197 (1837)
Q Consensus 1177 q~~~~d~~~~~~~~~~~~~k~ 1197 (1837)
.+.+.|..++..+.+++.+-.
T Consensus 328 G~~msDGaplvkIkqavsKLk 348 (384)
T KOG0972|consen 328 GAKMSDGAPLVKIKQAVSKLK 348 (384)
T ss_pred cccccCCchHHHHHHHHHHHH
Confidence 345667777666666654433
No 214
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.54 E-value=6.2e+02 Score=28.46 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhh
Q 000221 634 AIISKCIGKIREQT 647 (1837)
Q Consensus 634 ~~~~~~~~~l~~~~ 647 (1837)
.+...||+.|=+.+
T Consensus 62 ~ly~~~F~ELIRQV 75 (189)
T PF10211_consen 62 ELYSQCFDELIRQV 75 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788888886655
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.18 E-value=3.3e+02 Score=29.85 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 320 FAAARDELLNLKRREEESVENLSHLENENRKLVEQA--EKDREMVEAVNAELSKMKTELEHEKM 381 (1837)
Q Consensus 320 l~~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el--~~~~~~ie~l~~el~~l~~ele~le~ 381 (1837)
+..+..++..+..++..+...+..+..++..+...+ ..+...+..+..++..+...+..+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666777777777777777777777655 55666666666666666666666655
No 216
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.95 E-value=6e+02 Score=30.80 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 000221 1140 EVSALNSKLN 1149 (1837)
Q Consensus 1140 e~~~l~~kl~ 1149 (1837)
+|.++++++.
T Consensus 284 qisd~KfKl~ 293 (302)
T PF09738_consen 284 QISDYKFKLQ 293 (302)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 217
>PF13166 AAA_13: AAA domain
Probab=37.08 E-value=1.3e+03 Score=31.69 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 000221 1298 RDEVVRMTQC 1307 (1837)
Q Consensus 1298 ~~~~~~l~~e 1307 (1837)
+..++++.+.
T Consensus 637 ~N~~RriLE~ 646 (712)
T PF13166_consen 637 PNVMRRILEA 646 (712)
T ss_pred HHHhHHHHHH
Confidence 3334444443
No 218
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.11 E-value=5.5e+02 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1119 ALLKAKNDISVLEGEKRISDQEVSALNSK 1147 (1837)
Q Consensus 1119 ~l~~~~~~i~~Le~e~~~le~e~~~l~~k 1147 (1837)
++.-+..++..+...+..+...+..+...
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 219
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.03 E-value=7.2e+02 Score=27.95 Aligned_cols=7 Identities=29% Similarity=0.121 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000221 721 ERSEEKS 727 (1837)
Q Consensus 721 ~~leek~ 727 (1837)
..++.++
T Consensus 134 ~~Le~ki 140 (190)
T PF05266_consen 134 KELEMKI 140 (190)
T ss_pred HHHHHHH
Confidence 3333333
No 220
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.68 E-value=3.1e+02 Score=25.12 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 688 VRLQLNDLSNKLRVASEEFGALKEEKESQQKDLERSEEKSALLREKLSM 736 (1837)
Q Consensus 688 ~~~el~~l~~el~~l~~e~e~lk~el~~l~~eL~~leek~~~Lke~l~~ 736 (1837)
++..++.|-.....+..+...|..+...+..+...+-++....+.++..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555544444444333
No 221
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.21 E-value=4.3e+02 Score=25.21 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHH-HHHHHHHHhhHHH
Q 000221 1552 LFSIINSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDLEKM-KIEFAEFTFGLEK 1620 (1837)
Q Consensus 1552 L~~~~~~~~~l~~~i~~l~~ei~~lq~~l~~~~~ei~~L~k~l~~~~~~k~~l~~~-~~el~el~~~le~ 1620 (1837)
|+.+...|+.+.++...+...-...+..+...-.++..+++.+.+....-..+..- -.++..+...|+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 222
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=32.05 E-value=7.8e+02 Score=27.69 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=68.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhHhHHHH-hhhhhhccCcHHHhhHhHhHHHHHHHHHHHHHHHhccccc-ccccccc
Q 000221 196 INAVLYKKDREIEHLNAKVAEILVSHDVAAA-YLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGEL-MDSSISG 273 (1837)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g 273 (1837)
|.+=|.+||.-|.-|.+......+ ..+ |-...+ . ..=.|+.||+. .+.|.. ..|--+.
T Consensus 22 lEGELqARD~vI~~Lkaer~~~~~----~e~~Yg~~~~----~-------dp~~ALqRD~~-----~~~~~~~~~~v~~~ 81 (192)
T PF09727_consen 22 LEGELQARDVVIAMLKAERKKVFL----LEARYGFYNP----N-------DPFLALQRDSE-----AAGGEKEEEDVYEN 81 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH----HHHHHcCCCc----C-------cHHHHHHhHHH-----hcCCCCccCcchhh
Confidence 445578999999999987766653 222 221111 0 11246666643 333322 1111222
Q ss_pred cchhhccchHHHHHHHHHHHHHHHHHhhhhcCCCchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 000221 274 KISHVEQSTYMLIEKYNQMLYEIYQLGQCLSKPDPERRVQEQFETVFAAARDELLNLKRREEESVEN----LSHLENENR 349 (1837)
Q Consensus 274 ~le~lE~~t~~kAekY~el~eel~~Lei~l~~~~~~~~~~~e~~~~l~~~~~ele~lk~~~~el~~k----l~~le~e~~ 349 (1837)
-+.-|+..-.+--+-|..+...+-..+.... .+-.+++.-+.+.+.+..+ ..-|+.+..
T Consensus 82 pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhr-----------------r~i~eLe~EKrkh~~~~aqgDD~t~lLEkERe 144 (192)
T PF09727_consen 82 PLAELEKLMEHQKKMQRRMLEQLAAAEKRHR-----------------RTIQELEEEKRKHAEDMAQGDDFTNLLEKERE 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3455555555555556666665554443321 1222222223333333322 234556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 350 KLVEQAEKDREMVEAVNAELSKMKTEL 376 (1837)
Q Consensus 350 ~l~~el~~~~~~ie~l~~el~~l~~el 376 (1837)
.++..+...+.....+..+...+...+
T Consensus 145 RLkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 145 RLKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555555555544443333
No 223
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=31.27 E-value=9.9e+02 Score=28.66 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1072 AVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHTTIKSMEDALLKAKNDISVLEGEKRISD 1138 (1837)
Q Consensus 1072 ~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~~~~~le~~l~~~~~~i~~Le~e~~~le 1138 (1837)
....+-+.....++..+...+..+..+.-.|+.+.+..+..+=.+-.....-...+..++..+..++
T Consensus 239 ~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~Le 305 (391)
T KOG1850|consen 239 AKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLE 305 (391)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555556666666666666665555443333333333333333333333333
No 224
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.22 E-value=1.2e+03 Score=29.21 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 322 AARDELLNLKRREEESVENLSHLENENRKLVEQAEKDREMVEAVNAELSKMKTELEH 378 (1837)
Q Consensus 322 ~~~~ele~lk~~~~el~~kl~~le~e~~~l~~el~~~~~~ie~l~~el~~l~~ele~ 378 (1837)
.....+..++..+++...+.+.+-.++..+......+...+.....++..++.+..+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~ 66 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQ 66 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666666666666666655555555555555555444444
No 225
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.15 E-value=1e+03 Score=28.36 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1064 LSQVEANVAVLTEQNNVLQVGKTTLENELQMLKDEAGSQAVKLADAHT 1111 (1837)
Q Consensus 1064 l~~~e~~~~~l~~el~~le~~~~eLe~eL~~l~~El~~~~~kl~e~~~ 1111 (1837)
+.....++......+..+......|+..+.+.+.++.....++..+..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555556666666666666666666666655555554443
No 226
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=29.98 E-value=5.8e+02 Score=28.62 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHh
Q 000221 360 EMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSALQA-AELS 438 (1837)
Q Consensus 360 ~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~le~-~e~l 438 (1837)
......+..+..++.+++.+...+..+..++... ...+.-...+..+-..+..+..++..+..++..+....-. ++.+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000221 439 KEEFIKTENLVASL 452 (1837)
Q Consensus 439 ~~eL~~~r~~~~~l 452 (1837)
..++...+..+...
T Consensus 141 ~~~~~~~~~~anrw 154 (188)
T PF03962_consen 141 KEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHH
No 227
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=8.4e+02 Score=27.43 Aligned_cols=60 Identities=25% Similarity=0.348 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHhhchhhhhhhhhhhhhhhHHHHHHHHhcc------------ccChhhhhhhhh
Q 000221 1640 KGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLTTKVDLLEESLHGR------------RDQPEIVQERSI 1707 (1837)
Q Consensus 1640 ~gel~~Le~qi~~l~~El~d~~~~~~~~~ikLqt~~~~~~dL~~y~kaLd~ai~~~------------~~~~~~~~~~~~ 1707 (1837)
.|.+..++.|..+|.. -.|...+++-++.-++||-.+|..- .-|.++-++ |
T Consensus 81 dG~l~tie~Qr~alEn---------------A~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~e--I 143 (221)
T KOG1656|consen 81 DGTLSTIEFQREALEN---------------ANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEE--I 143 (221)
T ss_pred hhHHHHHHHHHHHHHc---------------ccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH--H
Confidence 3455666666554433 2244455566666666665554432 234555555 6
Q ss_pred hccCCCCCC
Q 000221 1708 FEASSLPTG 1716 (1837)
Q Consensus 1708 ~~~~~~~~~ 1716 (1837)
.++.|.|.|
T Consensus 144 seAiS~Pvg 152 (221)
T KOG1656|consen 144 SEAISAPVG 152 (221)
T ss_pred HHHHhCccc
Confidence 677788887
No 228
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.01 E-value=1.2e+03 Score=28.87 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 706 FGALKEEKESQQKDLERSEEKSALLREKLSMAVKKGKGLFQDRENLKLQLDEKNSEIEKLKLNLQEQEST 775 (1837)
Q Consensus 706 ~e~lk~el~~l~~eL~~leek~~~Lke~l~~~~~~~~~l~~e~~~Lk~~i~el~~ele~lk~el~~~e~e 775 (1837)
+......+...+..+..++.++..++..+..+ ..+...++..+......+.+...=+..+..+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~-------~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEA-------QKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 33333344444444444444444444444443 3334444444444444444444433333333
No 229
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.25 E-value=4.5e+02 Score=23.78 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000221 1085 KTTLENELQMLK 1096 (1837)
Q Consensus 1085 ~~eLe~eL~~l~ 1096 (1837)
..+|..++..+.
T Consensus 41 n~eL~~ei~~L~ 52 (61)
T PF08826_consen 41 NRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 230
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.36 E-value=6.1e+02 Score=25.01 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1123 AKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1123 ~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
+...+..++.++..+...+..+..++..+..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444334444444444443333
No 231
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.47 E-value=1.8e+03 Score=30.09 Aligned_cols=166 Identities=14% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 930 AHIQTSKFAEACASRKSLEDEMSVAKNNM-----SVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLE 1004 (1837)
Q Consensus 930 l~~~~~kl~e~~~~i~~le~~l~~l~~el-----~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le 1004 (1837)
+.-++.+...+...+.-+...+.+-+.-- ....-++-.++.-...+++.+......+..++.+.+++...+....
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000221 1005 DSLAQVEANVAMLTEQNKEEAQASGAAAVLELEQVREEFVSQTSKLTEAYTTIKSLEDALSQVEANVAVLTEQNNVLQVG 1084 (1837)
Q Consensus 1005 ~~l~~le~el~~l~ee~~~~~q~~~~~~e~ele~l~~E~~~~~~~l~~~~~~i~~L~~el~~~e~~~~~l~~el~~le~~ 1084 (1837)
.+-..+...+.+-..++ ..--....-+..+++..+.++...++.++-.+...+.+..-|.-.+++...+
T Consensus 469 ~Enk~~~~~~~ekd~~l-----------~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQEL-----------LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred HHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000221 1085 KTTLENELQMLKDEAGSQAVKL 1106 (1837)
Q Consensus 1085 ~~eLe~eL~~l~~El~~~~~kl 1106 (1837)
+..|+.-...++.-...+-..+
T Consensus 538 i~RL~eLtR~LQ~Sma~lL~dl 559 (861)
T PF15254_consen 538 IERLRELTRTLQNSMAKLLSDL 559 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
No 232
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.31 E-value=6.9e+02 Score=25.27 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000221 1121 LKAKNDISVLEGEKR 1135 (1837)
Q Consensus 1121 ~~~~~~i~~Le~e~~ 1135 (1837)
..+..++..++..+.
T Consensus 70 ~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 70 QELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 233
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.75 E-value=6.3e+02 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000221 404 RDSLKQSLADKTIELEKCLAELQEKSS 430 (1837)
Q Consensus 404 ~~~Lk~~l~e~~~el~~~~~ele~~~~ 430 (1837)
.+.++.+.+++..+-+++..+...+++
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
No 234
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=25.41 E-value=9.6e+02 Score=26.61 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1036 LEQVREEFVSQTSKLTEAYTTIKSLEDAL 1064 (1837)
Q Consensus 1036 le~l~~E~~~~~~~l~~~~~~i~~L~~el 1064 (1837)
++.+..++.++...-.-+...|..|+..+
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333444444444433
No 235
>PLN03188 kinesin-12 family protein; Provisional
Probab=25.20 E-value=2.3e+03 Score=30.99 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhHhHHHHhhhhhhccCcHHHhhHhHhHHHHHHHHHHHHHHHhcccccccc
Q 000221 196 INAVLYKKDREIEHLNAKVAEILVSHDVAAAYLNSAAGITSEAQIEKDQYVEVVADRMLSYLAMVVYQGELMDS 269 (1837)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1837)
|.++-...-.+|.+|++-|++|---++.-..+-..|. +.++.++ ...+.|+|-.+|+.+
T Consensus 882 le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~--------------~ki~~l~-~~~dg~l~~~~~~~~ 940 (1320)
T PLN03188 882 LEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTRE--------------DKIIRLE-SLMDGVLSKEDFLEE 940 (1320)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhh--------------hhHHHHh-hhcccccchhhhhhh
Confidence 4555667778999999999999844442222211111 1223222 233788888888764
No 236
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=25.06 E-value=1.5e+03 Score=28.68 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhh
Q 000221 1136 ISDQEVSALNSKLNACRDELAGTIGSLESRSVELIGHLNDLQMHM 1180 (1837)
Q Consensus 1136 ~le~e~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~ledlq~~~ 1180 (1837)
.+.....+++..+.-+. .+....-.+--.+.+|+.+|+|+.+.+
T Consensus 678 ~le~qAaEvesNlaLid-qi~kaaIdltvEkprlqAeLdd~ea~c 721 (790)
T PF07794_consen 678 VLEGQAAEVESNLALID-QITKAAIDLTVEKPRLQAELDDLEARC 721 (790)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence 33444455555554332 232222233355677888887766544
No 237
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.95 E-value=7.8e+02 Score=25.44 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1121 LKAKNDISVLEGEKRISDQEVSALNSKLNACRD 1153 (1837)
Q Consensus 1121 ~~~~~~i~~Le~e~~~le~e~~~l~~kl~~l~~ 1153 (1837)
..+..+++.++.++..++.+...+..++..+..
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444343343344444443333
No 238
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.89 E-value=1.6e+03 Score=29.11 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000221 890 SLEDALSVAEDKITQLADEKR 910 (1837)
Q Consensus 890 ~l~~el~~l~~~l~~l~~e~~ 910 (1837)
.+..++.....+|..++.+++
T Consensus 306 ~L~qqV~qs~EKIa~LEqEKE 326 (518)
T PF10212_consen 306 GLAQQVQQSQEKIAKLEQEKE 326 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 239
>PRK04406 hypothetical protein; Provisional
Probab=23.41 E-value=4e+02 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=16.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000221 1427 ASTIQDLQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDA 1467 (1837)
Q Consensus 1427 ~~~~~eLq~~L~e~~~~le~~~~e~e~~~~~l~~Le~~i~~ 1467 (1837)
...+.+|+.++.-....++.++...-..++.|..|..+++.
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554333333333333333333333333333333
No 240
>PF14992 TMCO5: TMCO5 family
Probab=23.25 E-value=1.3e+03 Score=27.48 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000221 863 LEQELGNVKQEASALAS 879 (1837)
Q Consensus 863 ~e~el~~lk~eie~l~~ 879 (1837)
+...+.....++..++.
T Consensus 121 l~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 121 LLESCASQEKEIAKVED 137 (280)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 241
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.32 E-value=7.2e+02 Score=25.07 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 327 LLNLKRREEESVENLSHLENENRKL--VEQAEKDREMVEAVNAELSKMKTELEHE 379 (1837)
Q Consensus 327 le~lk~~~~el~~kl~~le~e~~~l--~~el~~~~~~ie~l~~el~~l~~ele~l 379 (1837)
+..+.........++..++.++..+ ...+..++..+..++.++..+...+..+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333444444444444444444 4444444444444444444444444443
No 242
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.31 E-value=2.1e+02 Score=30.06 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch
Q 000221 1556 INSATKLPHQIDLLEHGKQELQSILSTQTAEIEHLKGEVETHLRNKPDL 1604 (1837)
Q Consensus 1556 ~~~~~~l~~~i~~l~~ei~~lq~~l~~~~~ei~~L~k~l~~~~~~k~~l 1604 (1837)
...+.+.++.|..|+..+.+|+.++..++.+|..|+.++....+.+..+
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888999999999999999999999999999998876655544
No 243
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.21 E-value=2.2e+03 Score=29.63 Aligned_cols=32 Identities=6% Similarity=0.242 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000221 776 ISECRDQINRLSNDLDCIRKMEADLIAMKDER 807 (1837)
Q Consensus 776 l~el~~~l~~L~~~~e~~~~le~el~~l~~el 807 (1837)
+..++.++..+......+...+.++..+..+.
T Consensus 348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~ 379 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDV 379 (726)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444443333344444444444333
No 244
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.11 E-value=1.7e+03 Score=28.20 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 1089 ENELQMLKDEAGSQAVKLA-DAHTTIKSMEDALLKAKNDISVLE 1131 (1837)
Q Consensus 1089 e~eL~~l~~El~~~~~kl~-e~~~~~~~le~~l~~~~~~i~~Le 1131 (1837)
+.++..+++++...+.+++ ....+.+.+.+.+...+.++..++
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655 445555666666666666666665
No 245
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=21.98 E-value=1.8e+03 Score=28.61 Aligned_cols=32 Identities=3% Similarity=0.092 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000221 1141 VSALNSKLNACRDELAGTIGSLESRSVELIGH 1172 (1837)
Q Consensus 1141 ~~~l~~kl~~l~~el~~~~~~le~~~~eL~~~ 1172 (1837)
+..+..+++.+-..+..+...+..+++++...
T Consensus 414 l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~k 445 (531)
T PF15450_consen 414 LKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTK 445 (531)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 34444444444455555555554444444333
No 246
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.83 E-value=1.5e+02 Score=37.17 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=0.0
Q ss_pred cchhhcc
Q 000221 274 KISHVEQ 280 (1837)
Q Consensus 274 ~le~lE~ 280 (1837)
++-++|+
T Consensus 45 ~~~~~E~ 51 (370)
T PF02994_consen 45 LIMMLED 51 (370)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3456666
No 247
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.56 E-value=1.4e+03 Score=27.16 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 947 LEDEMSVAKNNMSVLICEKEEAQASGAAAVVELEQVREEFASQTSKLTEAYKTIKSLEDSL 1007 (1837)
Q Consensus 947 le~~l~~l~~el~~l~~eie~l~~~~~~le~ele~l~~el~~l~~kl~e~~~~l~~Le~~l 1007 (1837)
++..+.....++....+.+..+++-+-..-.+.++++.++..+....-...+.+.-|+.++
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333333333333333333333333344566666666666555554444444444433
No 248
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.35 E-value=2.1e+03 Score=29.16 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000221 843 LEKVNWIASYINECHDTKTQLEQELGNVKQEASALASELAETQSTMK 889 (1837)
Q Consensus 843 ~eki~~~~~~~~elq~~l~~~e~el~~lk~eie~l~~el~e~~~~i~ 889 (1837)
.+.+..+...+..+.......-..+..+...+..||..+..-.....
T Consensus 225 ~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~ 271 (660)
T KOG4302|consen 225 DETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQ 271 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 34455556666677776666667777788888888777665444443
No 249
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.06 E-value=8.5e+02 Score=24.45 Aligned_cols=22 Identities=9% Similarity=0.210 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000221 948 EDEMSVAKNNMSVLICEKEEAQ 969 (1837)
Q Consensus 948 e~~l~~l~~el~~l~~eie~l~ 969 (1837)
...+...+..+..+..+++.+.
T Consensus 32 ~e~Lk~ke~~LRk~eqE~dSL~ 53 (102)
T PF10205_consen 32 KEQLKEKEQALRKLEQENDSLT 53 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 250
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.67 E-value=7.2e+02 Score=23.46 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000221 357 KDREMVEAVNAELSKMKTELEHEKMKCTGTKEKLSLAVTKGKALVQQRDSLKQSLADKTIELEKCLAELQEKSSA 431 (1837)
Q Consensus 357 ~~~~~ie~l~~el~~l~~ele~le~~~~~~~Eki~~~~~~~~~L~~~~~~Lk~~l~e~~~el~~~~~ele~~~~~ 431 (1837)
.....|+.++.+.+.++-.+.-++..+... .......+..+...|+-++..+..+++.+...+......
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~------~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL------GPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666555555554443311 111122333344445555555555555555555554443
Done!