Query 000221
Match_columns 1837
No_of_seqs 708 out of 2354
Neff 8.0
Searched_HMMs 13730
Date Tue Mar 26 17:33:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000221.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_0-3//hhsearch_scop/000221hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1stma_ b.121.7.1 (A:) SPMV co 5.3 65 0.0047 4.4 0.0 82 1721-1808 6-99 (141)
2 d1cf2o2 d.81.1.1 (O:139-303) G 3.2 49 0.0036 5.3 -2.1 19 1796-1814 140-158 (165)
3 d1vqoe2 d.141.1.1 (E:80-172) R 3.1 1.2E+02 0.0091 2.4 0.4 11 1797-1807 81-91 (93)
4 d1vqok1 b.39.1.1 (K:1-132) Rib 3.1 1.3E+02 0.0091 2.4 0.8 30 1774-1809 63-92 (132)
5 d1x87a_ e.51.1.1 (A:) Urocanat 3.0 1.3E+02 0.0095 2.2 -0.0 56 1637-1697 356-423 (545)
6 d1oqka_ b.137.1.1 (A:) Hypothe 3.0 1.3E+02 0.0097 2.1 0.0 32 1788-1819 45-78 (78)
7 d1uwka_ e.51.1.1 (A:) Urocanat 2.9 1.4E+02 0.01 2.0 0.0 56 1637-1697 364-431 (554)
8 d1eo0a_ a.48.3.1 (A:) Transcri 2.6 1.4E+02 0.0099 2.1 -0.3 61 1676-1756 1-62 (77)
9 d1ho8a_ a.118.1.9 (A:) Regulat 2.6 1.6E+02 0.011 1.6 1.6 31 1805-1835 223-254 (477)
10 d1nw1a_ d.144.1.8 (A:) Choline 2.5 1.3E+02 0.0093 2.3 -0.6 75 1749-1829 71-150 (395)
No 1
>d1stma_ b.121.7.1 (A:) SPMV coat protein {Satellite panicum mosaic virus [TaxId: 154834]}
Probab=5.33 E-value=65 Score=4.44 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=47.0
Q ss_pred CCCCCCCCCCC-----CCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000026578-----744568871112101367999840001356511-------114866787433342212333555
Q 000221 1721 EVEDVMQGTLG-----QKTISPVPSAAHTRTMRKGSTDHLTINIDSESA-------RLINSEETDEDKGHVFKSLNTLGL 1788 (1837)
Q Consensus 1721 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 1788 (1837)
.|-|.|-|.+- .|+-.+.|. ..+|-.-++--++.-|-+-+. ++-+ --|||.+|. --+-++|-
T Consensus 6 ~~~d~~y~slt~~~tts~~r~~fp~---l~~mgdr~fqvi~~~i~~~~a~p~~y~arly~--p~d~d~v~~-tg~q~~gt 79 (141)
T d1stma_ 6 LVYDTCYVTLTERATTSFQRQSFPT---LKGMGDRAFQVVAFTIQGVSAAPLMYNARLYN--PGDTDSVHA-TGVQLMGT 79 (141)
T ss_dssp EEEEEEEECCCTTCEEEEEGGGSHH---HHHSCSCCEEEEEEEEEEEESSCEEEEEEECC--TTCSSCSEE-CCCEEECS
T ss_pred HEEEEEEEEEECCCEEEEEECCCCC---CCCCCCCCEEEEEEEEEEEECCCHHHHEECCC--CCCCCCCCC-EEEEEECC
T ss_conf 2543578997436333565034842---02468874168999999975270211204148--998664464-10377446
Q ss_pred CCCCCCHHHHHHCCCEEECC
Q ss_conf 55788402231014053056
Q 000221 1789 IPRQGKMVADRIDGIWVSGG 1808 (1837)
Q Consensus 1789 ~~~~~~~~~~~~~~~~~~~~ 1808 (1837)
+|+-.|.-+----.-|.||.
T Consensus 80 ~prt~r~~~~~gqn~wf~gn 99 (141)
T d1stma_ 80 VPRTVRLTPRVGQNNWFFGN 99 (141)
T ss_dssp SCEEEEECCCTTSCCCBCTT
T ss_pred CCCEEEEEECCCCCCEEECC
T ss_conf 67506700046865314457
No 2
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}
Probab=3.15 E-value=49 Score=5.34 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHCCCEEECCCCCCCC
Q ss_conf 2231014053056000357
Q 000221 1796 VADRIDGIWVSGGRLLMSR 1814 (1837)
Q Consensus 1796 ~~~~~~~~~~~~~~~~~~~ 1814 (1837)
++-+-||+||.|+++-|-+
T Consensus 140 ~~vw~ds~~v~gd~l~~~~ 158 (165)
T d1cf2o2 140 IPVWRESITVVDNEIYYMQ 158 (165)
T ss_dssp EEEEGGGCEEETTEEEEEE
T ss_pred HEEECCCEEEECCEEEEEE
T ss_conf 6056133099899999998
No 3
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=3.14 E-value=1.2e+02 Score=2.37 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=8.4
Q ss_pred HHHHCCCEEEC
Q ss_conf 23101405305
Q 000221 1797 ADRIDGIWVSG 1807 (1837)
Q Consensus 1797 ~~~~~~~~~~~ 1807 (1837)
--|.||||||-
T Consensus 81 R~FlDGIYv~e 91 (93)
T d1vqoe2 81 RVFQDGVYITR 91 (93)
T ss_dssp TTCCCEEEEEE
T ss_pred CEEECCEEEEE
T ss_conf 58334889973
No 4
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=3.14 E-value=1.3e+02 Score=2.36 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
Q ss_conf 433342212333555557884022310140530560
Q 000221 1774 EDKGHVFKSLNTLGLIPRQGKMVADRIDGIWVSGGR 1809 (1837)
Q Consensus 1774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1809 (1837)
.-|+.+++ ++|-++-+|+- |-||.|++|+.
T Consensus 63 ~~k~~v~~-----AvIVrtkk~~~-R~dG~~i~Fdd 92 (132)
T d1vqok1 63 EMRRQVLE-----AVVVRQRKPIR-RPDGTRVKFED 92 (132)
T ss_dssp TTTTCEEE-----EEEEECSSCEE-CTTSCEEEESS
T ss_pred CCCCCEEE-----EEEEEECCCEE-CCCCCEEECCC
T ss_conf 76666079-----99998567478-79999898179
No 5
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.02 E-value=1.3e+02 Score=2.22 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH------------HHHHHHHHHHHCCCC
Q ss_conf 2511038999999999999988349999871011031345665166------------647889998860006
Q 000221 1637 SGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLT------------TKVDLLEESLHGRRD 1697 (1837)
Q Consensus 1637 a~~~gel~~Le~qi~~l~~El~d~~~~~~~~~ikLqt~~~~~~dL~------------~y~kaLd~ai~~~~~ 1697 (1837)
+|...-+..-++-+..+..+-..+ -.||+.......+.-|. +-..|+-.++.+-+.
T Consensus 356 SGdpeDi~~TD~~~~e~f~~n~~l-----~~WI~~A~~~~~fqGlpARI~wlg~~~R~~~~lafN~~V~~G~l 423 (545)
T d1x87a_ 356 SGDPEDIYKTDEVILREFSDNERL-----CHWIRMAQKRIKFQGLPARICWLGYGERAKFGKIINDMVAKGEL 423 (545)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCHHH-----HHHHHHHHHHCCCCSSCEEEEEECTTHHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 688788898899999867654577-----79999987526312453122106801899999999999974961
No 6
>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.97 E-value=1.3e+02 Score=2.15 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHH-CCCEE-ECCCCCCCCCHHHH
Q ss_conf 5557884022310-14053-05600035711469
Q 000221 1788 LIPRQGKMVADRI-DGIWV-SGGRLLMSRPGTRL 1819 (1837)
Q Consensus 1788 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 1819 (1837)
.|||.+-...=.+ ||-+| =.|..|+.||.-|+
T Consensus 45 ~IpK~~~~F~f~~~~g~~v~i~G~~l~~RP~dRi 78 (78)
T d1oqka_ 45 TVPKGIAVFHFRTPQGELVEIDGRALVARPEERI 78 (78)
T ss_dssp EEECTTCEEEEEETTTEEEEECSSSCCCCSTTCC
T ss_pred EEECCCEEEEEEECCCCEEEEECCEECCCHHHCC
T ss_conf 9857887999997999799998915147957869
No 7
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida [TaxId: 303]}
Probab=2.87 E-value=1.4e+02 Score=2.03 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH------------HHHHHHHHHHHCCCC
Q ss_conf 2511038999999999999988349999871011031345665166------------647889998860006
Q 000221 1637 SGSKGLLAVLEKQIMTLHSDAENSKSKVQELGNKLLESQKEVDDLT------------TKVDLLEESLHGRRD 1697 (1837)
Q Consensus 1637 a~~~gel~~Le~qi~~l~~El~d~~~~~~~~~ikLqt~~~~~~dL~------------~y~kaLd~ai~~~~~ 1697 (1837)
+|...-+..-++-+..+.-+-.. ...||+.......+.-|. +-..|+-.++.+-+.
T Consensus 364 SGdpeDi~~TD~~~~e~fp~~~~-----l~rWI~~A~e~~~fqGlpARI~wlg~~~R~~~~l~fN~~V~~G~l 431 (554)
T d1uwka_ 364 SGEAEDIYKTDAKVKELIPDDAH-----LHRWLDMARERISFQGLPARICWVGLGLRAKLGLAFNEMVRSGEL 431 (554)
T ss_dssp TCCHHHHHHHHHHHHHHSTTCHH-----HHHHHHHHHHHCCCCSSCEEECCBCTTHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 58844225667999876742177-----889999888607412565223533703889999999999974962
No 8
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.60 E-value=1.4e+02 Score=2.11 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 5665166647889998860006802454443200489-998865400000002657874456887111210136799984
Q 000221 1676 KEVDDLTTKVDLLEESLHGRRDQPEIVQERSIFEASS-LPTGSEISEVEDVMQGTLGQKTISPVPSAAHTRTMRKGSTDH 1754 (1837)
Q Consensus 1676 ~~~~dL~~y~kaLd~ai~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1754 (1837)
|-..++-.+.++|+++...-..-+++|..=. + .|.+- ++-.. +.+|+. |+.+||-++..
T Consensus 1 md~~ev~~~~k~Lek~~~~~~~~l~~L~~L~-----~~~~it~---d~L~~--T~iG~~----------Vn~LRkh~~~~ 60 (77)
T d1eo0a_ 1 MDSKEVLVHVKNLEKNKSNDAAVLEILHVLD-----KEFVPTE---KLLRE--TKVGVE----------VNKFKKSTNVE 60 (77)
T ss_dssp CCHHHHHHHHHHHHHHCSSSHHHHHHHHHHT-----TTCSCST---THHHH--HHHHHH----------HHHCCSSSCTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----HCCCCCH---HHHHH--CCCCHH----------HHHHHCCCCHH
T ss_conf 9789999999987256588899999999988-----5598859---99977--780088----------99875589589
Q ss_pred CE
Q ss_conf 00
Q 000221 1755 LT 1756 (1837)
Q Consensus 1755 ~~ 1756 (1837)
++
T Consensus 61 v~ 62 (77)
T d1eo0a_ 61 IS 62 (77)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 9
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.59 E-value=1.6e+02 Score=1.63 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=0.0
Q ss_pred EECCCCCCCCCHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 30560003571146999-99999999999410
Q 000221 1805 VSGGRLLMSRPGTRLGL-IAYSLLLHIWLLGT 1835 (1837)
Q Consensus 1805 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1835 (1837)
.++...++.--.-+.|+ +.|.+++-+||++|
T Consensus 223 ~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 254 (477)
T d1ho8a_ 223 SQLATRIVATNSNHLGIQLQYHSLLLIWLLTF 254 (477)
T ss_dssp -------------CCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 56542000036888537999999999999975
No 10
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=2.49 E-value=1.3e+02 Score=2.29 Aligned_cols=75 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-----HHHHHCCCEEECCCCCCCCCHHHHHHHH
Q ss_conf 79998400013565111148667874333422123335555578840-----2231014053056000357114699999
Q 000221 1749 KGSTDHLTINIDSESARLINSEETDEDKGHVFKSLNTLGLIPRQGKM-----VADRIDGIWVSGGRLLMSRPGTRLGLIA 1823 (1837)
Q Consensus 1749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1823 (1837)
+.+...+.+-|-..+...++..-+ .++|+-|+-.|++|+---. |+.+|+| .+...--|+.|...-.+.-
T Consensus 71 ~~~~~~vllRi~g~~~~~idr~~E----~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g--~~l~~~d~~~~~~~~~iA~ 144 (395)
T d1nw1a_ 71 RNEPNKVLLRVYFNPETESHLVAE----SVIFTLLSERHLGPKLYGIFSGGRLEEYIPS--RPLSCHEISLAHMSTKIAK 144 (395)
T ss_dssp SSCCSEEEEEEECSCCCHHHHHHH----HHHHHHHHHTTSSSCEEEEETTEEEECCCCE--EECCTTGGGSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHH----HHHHHHHHHCCCCCEEEEECCCCEEEEEECC--CCCCHHHCCCHHHHHHHHH
T ss_conf 578981799965996116589999----9999999757999808998189569997345--5488333146555599999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000221 1824 YSLLLH 1829 (1837)
Q Consensus 1824 ~~~~~~ 1829 (1837)
.-+-+|
T Consensus 145 ~La~lH 150 (395)
T d1nw1a_ 145 RVAKVH 150 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHH
T ss_conf 999985
Done!