BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000223
(1833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 20/223 (8%)
Query: 453 ESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVAN----HLSSVDTL---LQQ 505
ES +V+GVV K V H RM +++ + ++ ALE ++ +++S D L L+Q
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 506 EMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQ 565
E LK V I NV+ V+K + AQ YL I V +K+ +E++A+ TGA+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 566 IVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKG 625
IV ++ LT + LGY + +EE AG+ ++FVEGC P TIL++G
Sbjct: 332 IVTNVKDLTPEDLGYAEV------VEERKLAGE-------NMIFVEGCKNPKAVTILIRG 378
Query: 626 ANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLK 668
+ + + ++ V + + + L GA +L ++
Sbjct: 379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 20/223 (8%)
Query: 453 ESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVAN----HLSSVDTL---LQQ 505
ES +V+GVV K V H RM +++ + ++ ALE ++ +++S D L L+Q
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 506 EMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQ 565
E LK V I NV+ V+K + AQ YL I V +K+ +E++A+ TGA+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 566 IVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKG 625
IV ++ LT + LGY + +EE AG+ ++FVEGC P TIL++G
Sbjct: 332 IVTNVKDLTPEDLGYAEV------VEERKLAGE-------NMIFVEGCKNPKAVTILIRG 378
Query: 626 ANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLK 668
+ + + ++ V + + + L GA +L ++
Sbjct: 379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 20/223 (8%)
Query: 453 ESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVAN----HLSSVDTL---LQQ 505
ES +V+GVV K V H RM +++ + ++ ALE ++ +++S D L L+Q
Sbjct: 212 ESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQ 271
Query: 506 EMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQ 565
E LK V I NV+ V+K + AQ YL I V +K+ +E++A+ TGA+
Sbjct: 272 EEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331
Query: 566 IVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKG 625
IV ++ LT + LGY + +EE AG+ ++FVEGC P TIL++G
Sbjct: 332 IVTNVKDLTPEDLGYAEV------VEERKLAGE-------NMIFVEGCKNPKAVTILIRG 378
Query: 626 ANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLK 668
+ + + ++ V + + + L GA +L ++
Sbjct: 379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIR 421
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 147/312 (47%), Gaps = 47/312 (15%)
Query: 374 HRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITS----------------L 417
+RKAL +++ L+ ++PV D ++R++ L II S +
Sbjct: 114 YRKALDDMI---------STLKKISIPV-DTSNRDTMLNIINSSITTKVISRWSSLACNI 163
Query: 418 SWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDK 477
+ +A ++ + + +D +Y +V+ + G +S V++GV+ K+V H RM I
Sbjct: 164 ALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKN 223
Query: 478 PRFLILGGALEYQRVANHLSSVDT-------LLQQEMDHLKMAVTKIDAHHPNVLLVEKS 530
PR ++L +LEY++ + T +LQ E ++++ I P+V++ EK
Sbjct: 224 PRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKG 283
Query: 531 VSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKF 589
+S AQ YL+ +I+ + +++ RIAR GA+IV + L + +G ++K
Sbjct: 284 ISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKI 343
Query: 590 LEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLA 649
+E+ F+ C P CTILL+GA+ + L + + +Q + ++
Sbjct: 344 GDEY-------------FTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVL 390
Query: 650 LETSFLADEGAS 661
L+ + GAS
Sbjct: 391 LDPQLVPGGGAS 402
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 134/309 (43%), Gaps = 57/309 (18%)
Query: 410 WLEIITSLSWEAATLLKPDMSKCGGMDPG------EYVKVKCLACGRRSESMVVKGVVCK 463
W E + L+ +A ++ D+ + +P YV+V+ + G +S V+KGV+
Sbjct: 167 WSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLN 226
Query: 464 KNVAHRRMTSKIDKPRFLILGGALEYQRVANHLS-------SVDTLLQQEMDHLKMAVTK 516
K+V H +M+ I+ PR ++L LEY++ + + + +LQ E + +++ +
Sbjct: 227 KDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQ 286
Query: 517 IDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQ 576
I A P +++ EK VS AQ YLL S++ +K+ RIAR TGA IV ++ L
Sbjct: 287 ILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKES 346
Query: 577 KLGY-CDTFHVEKFLEEH----------GSA----------GQGGKKLSKTLMFVEGCPK 615
+G C F VE +E+ GS G G ++ K + V +
Sbjct: 347 DVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANR 406
Query: 616 -----------------------PLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALET 652
CTI+L+G + D L + +Q + A ++ L
Sbjct: 407 FKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSP 466
Query: 653 SFLADEGAS 661
S GA+
Sbjct: 467 SLSPGGGAT 475
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 447 ACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA-------NHLSSV 499
A G +++ +V G+V K V H M +++ + ++ +LE ++ N + +
Sbjct: 213 AGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQM 272
Query: 500 DTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIA 559
L +E + +K V KI A NV++ +K + AQ YL K + V K+ LE++A
Sbjct: 273 QKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLA 332
Query: 560 RCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGC 619
R TG ++V +ID ++ Q LGY K E+ ++FVEG P
Sbjct: 333 RATGGRVVSNIDEISEQDLGYASLIEERKVGED-------------KMVFVEGAKNPKSI 379
Query: 620 TILLKGA 626
+IL++G
Sbjct: 380 SILIRGG 386
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 80.5 bits (197), Expect = 8e-15, Method: Composition-based stats.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 453 ESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHL-------SSVDTLLQQ 505
+S V++GV+ K+V H RM I PR ++L +LEY++ + +LQ
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 506 EMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQ 565
E +++ I P+V++ EK +S AQ YL+ +++ + +++ RIAR GA+
Sbjct: 63 EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122
Query: 566 IVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLK 624
IV + L +G ++K +E+ F+ C P CTILL+
Sbjct: 123 IVSRPEELREDDVGTGAGLLEIKKIGDEY-------------FTFITDCKDPKACTILLR 169
Query: 625 GAN 627
GA+
Sbjct: 170 GAS 172
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 80.1 bits (196), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 20/235 (8%)
Query: 441 VKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA------- 493
+KV G +++ + G+V K H +M + + ++ ALE ++
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 494 NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 553
+ S + L QE + K V KI NV+L +K + AQ YL + I V +K+
Sbjct: 257 SDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKS 316
Query: 554 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGC 613
+E++A+ TGA+IV +D LT LG +T K ++ + FV GC
Sbjct: 317 DMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDR-------------MTFVMGC 363
Query: 614 PKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLK 668
P +IL++G + + + + + + FL GA +L ++
Sbjct: 364 KNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMR 418
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 173
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 174 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 229
Query: 484 GGALEYQRVANHL-------SSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQ 536
A+E + + + ++QE LK V +I A NVL +K + AQ
Sbjct: 230 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 289
Query: 537 DYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSA 596
YL + I +K+ +E++A+ TGA ++ +I L++Q LG D VE+
Sbjct: 290 HYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG--DAGLVEE-------- 339
Query: 597 GQGGKKLS-KTLMFVEGCPKPLGCTILLKG 625
+K+S +++FVE C P T+L++G
Sbjct: 340 ----RKISGDSMIFVEECKHPKAVTMLIRG 365
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 179
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 180 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 235
Query: 484 GGALEYQRVANHL-------SSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQ 536
A+E + + + ++QE LK V +I A NVL +K + AQ
Sbjct: 236 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 295
Query: 537 DYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSA 596
YL + I +K+ +E++A+ TGA ++ +I L++Q LG D VE+
Sbjct: 296 HYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG--DAGLVEE-------- 345
Query: 597 GQGGKKLS-KTLMFVEGCPKPLGCTILLKG 625
+K+S +++FVE C P T+L++G
Sbjct: 346 ----RKISGDSMIFVEECKHPKAVTMLIRG 371
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 173
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 174 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 229
Query: 484 GGALEYQRVANHL-------SSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQ 536
A+E + + + ++QE LK V +I A NVL +K + AQ
Sbjct: 230 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 289
Query: 537 DYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSA 596
YL + I +K+ +E++A+ TGA ++ +I L++Q LG D VE+
Sbjct: 290 HYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLG--DAGLVEE-------- 339
Query: 597 GQGGKKLS-KTLMFVEGCPKPLGCTILLKG 625
+K+S +++FVE C P T+L++G
Sbjct: 340 ----RKISGDSMIFVEECKHPKAVTMLIRG 365
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 72.0 bits (175), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 30/270 (11%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 179
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 180 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 235
Query: 484 GGALEYQRVANHL-------SSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQ 536
A+E + + + ++QE LK V +I A NVL +K + AQ
Sbjct: 236 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQ 295
Query: 537 DYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSA 596
YL + I +K+ +E++A+ TGA ++ +I L++Q LG D VE+
Sbjct: 296 HYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLG--DAGLVEE-------- 345
Query: 597 GQGGKKLS-KTLMFVEGCPKPLGCTILLKG 625
+K+S +++FVE C P T+L++G
Sbjct: 346 ----RKISGDSMIFVEECKHPKAVTMLIRG 371
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 449 GRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA-------NHLSSVDT 501
G ++ ++ G++ K H M + + +L LE ++ S +
Sbjct: 206 GAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQK 265
Query: 502 LLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARC 561
L QE + L+ V KI + NV++ +K + AQ YL I V +K+ ++++A+
Sbjct: 266 FLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKA 325
Query: 562 TGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTI 621
TGA IV +ID ++S LG + K E++ + FV GC P +I
Sbjct: 326 TGASIVSTIDEISSSDLGTAERVEQVKVGEDY-------------MTFVTGCKNPKAVSI 372
Query: 622 LLKG 625
L++G
Sbjct: 373 LVRG 376
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 408 ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVA 467
E++ E +++L+ +A + + ++ E +K++ A G +S ++ G+V K +
Sbjct: 118 EAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERS 177
Query: 468 HRRMTSKIDKPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAH 520
H M K++ + L+L +E+++ + L QE ++ K+ A
Sbjct: 178 HPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIAS 237
Query: 521 HPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGY 580
NV+ +K + AQ Y+ I V +K+ L+R+++ TGA I+ +D +T++ +G
Sbjct: 238 GANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVG- 296
Query: 581 CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGA 626
+EE +GGK + +V GC T+LL G
Sbjct: 297 -----TAGLVEE--KEVRGGK-----MTYVTGCQNSKAVTVLLHGG 330
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 68.2 bits (165), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 38/280 (13%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 173
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 174 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 229
Query: 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 543
A+E + + LK V +I A NVL +K + AQ YL +
Sbjct: 230 NCAIE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 274
Query: 544 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL 603
I +K+ +E++A+ TGA ++ +I L++Q LG D VE+ +K+
Sbjct: 275 IVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG--DAGLVEE------------RKI 320
Query: 604 S-KTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGV 642
S +++FVE C P T+L++G +++ V V
Sbjct: 321 SGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAV 360
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 67.4 bits (163), Expect = 6e-11, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 38/263 (14%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 173
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 174 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 229
Query: 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 543
A+E + + LK V +I A NVL +K + AQ YL +
Sbjct: 230 NCAIE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 274
Query: 544 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL 603
I +K+ +E++A+ TGA ++ +I L++Q LG D VE+ +K+
Sbjct: 275 IVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLG--DAGLVEE------------RKI 320
Query: 604 S-KTLMFVEGCPKPLGCTILLKG 625
S +++FVE C P T+L++G
Sbjct: 321 SGDSMIFVEECKHPKAVTMLIRG 343
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 38/263 (14%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 118 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 173
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 174 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 229
Query: 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 543
A+E + + LK V +I A NVL +K + AQ YL +
Sbjct: 230 NCAIE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 274
Query: 544 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL 603
I +K+ +E++A+ TGA ++ +I L++Q LG D VE+ +K+
Sbjct: 275 IVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG--DAGLVEE------------RKI 320
Query: 604 S-KTLMFVEGCPKPLGCTILLKG 625
S +++FVE C P T+L++G
Sbjct: 321 SGDSMIFVEECKHPKAVTMLIRG 343
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 38/263 (14%)
Query: 364 YRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAAT 423
Y+ + +E K + V + ++ ++ G E +E EII EA +
Sbjct: 124 YQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIV----EAVS 179
Query: 424 LLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483
+ D K + +K++ + ++ ++KGV+ K +M K+ + +L
Sbjct: 180 AVVDDEGKVDK----DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 235
Query: 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 543
A+E + + LK V +I A NVL +K + AQ YL +
Sbjct: 236 NCAIE---------------ETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEG 280
Query: 544 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL 603
I +K+ +E++A+ TGA ++ +I L++Q LG D VE+ +K+
Sbjct: 281 IVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLG--DAGLVEE------------RKI 326
Query: 604 S-KTLMFVEGCPKPLGCTILLKG 625
S +++FVE C P T+L++G
Sbjct: 327 SGDSMIFVEECKHPKAVTMLIRG 349
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 457 VKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDH 509
+ G+V K H +M + + ++ ALE ++ + S + L QE +
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNT 60
Query: 510 LKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPS 569
K V KI NV+L +K + AQ YL + I V +K+ +E++A+ TGA+IV
Sbjct: 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTD 120
Query: 570 IDHLTSQKLGYCDTFHVEK 588
+D LT LG +T K
Sbjct: 121 LDDLTPSVLGEAETVEERK 139
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 18/222 (8%)
Query: 1528 FTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKT 1587
F + L K+ C + F LR + D++ SL+R ++G S+ F +
Sbjct: 60 FHRENLPSHFKFKEYC--PQVFRNLRDRFGIDDQDYLVSLTRNPPSESEG--SDGRFLIS 115
Query: 1588 LDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKE 1647
D +IK+V ++ Y +Y+ + T L + LG+Y+V+ + ++
Sbjct: 116 YDRTLVIKEVSSEDIADMHSNLSNYHQYI---VKCHGNTLLPQFLGMYRVSVDN----ED 168
Query: 1648 SKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVG 1706
S M LVM N+ R + R YDLKGS SR +D ++ +++ +++G
Sbjct: 169 SYM--LVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLNKNQKVYIG 226
Query: 1707 SKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLG 1748
+ K++ + D FL + +MDYSLL+GI H+++ G
Sbjct: 227 EEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGI----HDIIRG 264
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 17/217 (7%)
Query: 1528 FTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQG-GKSNVFFAK 1586
F + L + K+ C F LR + D+ S++R + G+ F
Sbjct: 84 FNKENLPSRFKFKEYCPMV--FRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLT 141
Query: 1587 TLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGK 1646
T D RF+IK V ++ Y +++ E T L + LG+Y++ G
Sbjct: 142 TYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGN---TLLPQFLGMYRLTVD----GV 194
Query: 1647 ESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTSGSNKV--LLDQNLIEAMPTSPI 1703
E+ M +V N+ R + R YDLKGS+ +R +D + + D + + +
Sbjct: 195 ETYM--VVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNE--GQKL 250
Query: 1704 FVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDE 1740
VG ++K+ + D FLA + +MDYSLLVGI +
Sbjct: 251 HVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHD 287
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 17/215 (7%)
Query: 1528 FTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKW-GAQGGKSNVFFAK 1586
F + + K+ C F LR + DF SL+R +S F
Sbjct: 68 FNKENMPSHFKFKEYCPMV--FRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHT 125
Query: 1587 TLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGK 1646
+ D R+IIK + ++ Y +Y+ E T L + LG+Y++ G
Sbjct: 126 SYDKRYIIKTITSEDVAEMHNILKKYHQYIVECHGI---TLLPQFLGMYRLNVD----GV 178
Query: 1647 ESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTSGSNKV--LLDQNLIEAMPTSPI 1703
E + ++V N+ R ++ R YDLKGS+ +R +D + ++ L D + I I
Sbjct: 179 E--IYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDNDFINE--GQKI 234
Query: 1704 FVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGI 1738
++ K++ + D FLA + +MDYSLLVGI
Sbjct: 235 YIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGI 269
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 40 RVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFR 99
RVC+ C +FT NR+HHCR CG VFC +CT P + G E + +RVC+ CF
Sbjct: 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPL----PKYGIE--KEVRVCDGCFA 215
Query: 100 QWEQG 104
++G
Sbjct: 216 ALQRG 220
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 110/265 (41%), Gaps = 36/265 (13%)
Query: 439 EYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALE-------YQR 491
E +KV+ GR ++ ++KGV+ K+ +H +M +++ + IL E ++
Sbjct: 185 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 492 VANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 551
+ L + E + + + +I N+ + + A LL D+ V +
Sbjct: 245 DVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVG 304
Query: 552 RPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVE 611
P +E IA TG +IVP LT++KLG+ L + S G K ++ +E
Sbjct: 305 GPEIELIAIATGGRIVPRFSELTAEKLGFAG-------LVKEISFGTTKDK----MLVIE 353
Query: 612 GCPKPLGCTILLKGANGDNLKKAK-----------------HVVQYGVFAAYHLALETSF 654
C TI ++G N +++AK VV G A AL S
Sbjct: 354 QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ 413
Query: 655 LADEGASLPQLPLKSPITVALPVKP 679
AD+ +L Q +++ AL V P
Sbjct: 414 EADKCPTLEQYAMRA-FADALEVIP 437
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 58.5 bits (140), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 457 VKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDH 509
+ G++ K H M + + +L LE ++ S + L QE +
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENM 60
Query: 510 LKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPS 569
L+ V KI + NV++ +K + AQ YL I V +K+ ++++A+ TGA IV +
Sbjct: 61 LREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVST 120
Query: 570 IDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGK 601
ID ++S LG + K E++ + G K
Sbjct: 121 IDEISSSDLGTAERVEQVKVGEDYMTFVTGSK 152
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin
(Zfyve16) At 1.1a Resolution
Length = 90
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIR 92
W+PD C C +FT RRHHCR CG VFC C + E R
Sbjct: 14 WVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEA--------R 65
Query: 93 VCNYCF 98
VC C+
Sbjct: 66 VCVVCY 71
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed
With Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNS--VPASFDESRTGREDSER 90
W D + C C F+V RRHHCR CG +FCA+C+ + P+S +
Sbjct: 3 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS----------KKP 52
Query: 91 IRVCNYCF 98
+RVC+ CF
Sbjct: 53 VRVCDACF 60
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNS--VPASFDESRTGREDSER 90
W D + C C F+V RRHHCR CG +FCA+C+ + P+S +
Sbjct: 63 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS----------KKP 112
Query: 91 IRVCNYCF 98
+RVC+ CF
Sbjct: 113 VRVCDACF 120
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 32/226 (14%)
Query: 453 ESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRV------------------AN 494
++ +KG+V H M +++ LIL +LEY++ A+
Sbjct: 206 DTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAAS 265
Query: 495 HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPL 554
VD L++ +D LK V +D V++ +K + + D +I + KR
Sbjct: 266 ERKFVDAKLKKIID-LKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRN 324
Query: 555 LERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCP 614
+ER+ TG + S++ L+ Q LG+ + E EE +V
Sbjct: 325 MERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEK-------------FTYVTENT 371
Query: 615 KPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGA 660
P CTIL+KG+ L + K V+ G+ A ++ + + + GA
Sbjct: 372 DPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGA 417
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 42 CYECDSQFTVFNRRHHCRLCGLVFCAKCTT--NSVPASFDESRTGREDSERIRVCNYCFR 99
C+ C QF V R+HHCR CG +FC KC++ +++P + G E + +RVC C+
Sbjct: 167 CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIP------KFGIE--KEVRVCEPCYE 218
Query: 100 Q 100
Q
Sbjct: 219 Q 219
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 29 SRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDS 88
S+ +W D+ C C FT RRHHCR CG V C C+ + R +
Sbjct: 11 SKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPM------RGIT 64
Query: 89 ERIRVCNYCF 98
E RVC+ C+
Sbjct: 65 EPERVCDACY 74
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 456 VVKGVVCKKNVAHRRMTSKIDKPRFLILGGAL-------EYQRVANHLSSVDTLLQQEMD 508
+V+G+V + VA+ +T +++K + ++ L + Q V + +D +L++E
Sbjct: 202 LVEGLVLTQKVANSGIT-RVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERA 260
Query: 509 HLKMAVTKIDAHHPNVLLVEKSVSR-----YAQDYLLAKDISLVLNIKRPLLERIARCTG 563
++ V +I NVLL++KS+ R A +L I +V +I+R +E I + G
Sbjct: 261 YILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIG 320
Query: 564 AQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP-LGCTIL 622
+ V +D T+ LG + L E S GK L+ + GC P TI+
Sbjct: 321 TKPVAHVDQFTADMLGSAE-------LAEEVSLNGSGK-----LIKITGCASPGKTVTIV 368
Query: 623 LKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLK 668
++G+N +++A+ + + L + + +A GA +L L+
Sbjct: 369 VRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALR 414
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIR 92
W+ +C +C + +F++ NR+HHCR CG VFC + ++NS+P E +R
Sbjct: 8 WIDSDACMICSK---KFSLLNRKHHCRSCGGVFCQEHSSNSIPL------PDLGIYEPVR 58
Query: 93 VCNYCFRQWE 102
VC+ CF +E
Sbjct: 59 VCDSCFEDYE 68
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 439 EYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRV------ 492
E++++ + G+ S+S + +G + K + + +I+ + LI L+ +V
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 493 --ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI 550
+ + + L + E + +K + KI N + + + Y + I+ + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHA 309
Query: 551 KRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFV 610
+ER+A TG ++V + D + KLG CD E L E + +
Sbjct: 310 DFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIE-EIMLGE------------QPFLKF 356
Query: 611 EGCPKPLGCTILLKGANGDNLKKAKH 636
GC CTI+L+GA L +A+
Sbjct: 357 SGCKAGEACTIVLRGATDQTLDEAER 382
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 34 MPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRV 93
+P C C F++ RRHHC CG + C C+ N P + + R +V
Sbjct: 370 VPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRXA-------KV 422
Query: 94 CNYCF 98
C+ CF
Sbjct: 423 CDGCF 427
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger
Fyve Domain-Containing Protein 12
Length = 89
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSV 74
W+ D C +C+ +F++ R+HHCR CG +FC C++N +
Sbjct: 20 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 61
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 25/198 (12%)
Query: 439 EYVKVKCLACGRRSESMVVKGVVCKKNVAH---RRMTSKIDKPRFLILGGALEYQ----- 490
+ + +K + G ES +V GV KK ++ K P +L LE +
Sbjct: 184 KMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDN 243
Query: 491 ---RVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLV 547
RV + + ++ E + L + KI V+L + + A Y +D+
Sbjct: 244 AEIRV-HTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCA 302
Query: 548 LNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTL 607
+ L+R G I S++ L+S LG C F + GG++ +
Sbjct: 303 GRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQI---------GGERYN--- 350
Query: 608 MFVEGCPKPLGCTILLKG 625
F GCPK CTI+L+G
Sbjct: 351 -FFTGCPKAKTCTIILRG 367
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve
Domain-Containing Protein
Length = 82
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 33 WMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSV 74
W+ D C +C+ +F++ R+HHCR CG +FC C++N +
Sbjct: 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 54
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 25/199 (12%)
Query: 439 EYVKVKCLACGRRSESMVVKGVVCKKNVAH---RRMTSKIDKPRFLILGGALEYQ----- 490
+ + +K + G ES+ + GV KK ++ + K + P+ L L LE +
Sbjct: 197 KLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAEKDN 256
Query: 491 ---RVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLV 547
RV H+ ++ E + + +++ N++L + + A + ++I
Sbjct: 257 AEVRV-EHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCA 315
Query: 548 LNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTL 607
+ + R+ + G I + + + LG C F E G S+
Sbjct: 316 GRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALF-------EEMQIG------SERY 362
Query: 608 MFVEGCPKPLGCTILLKGA 626
+GCP+ CT+LL+G
Sbjct: 363 NLFQGCPQAKTCTLLLRGG 381
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 114/300 (38%), Gaps = 43/300 (14%)
Query: 439 EYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKI------DKPRFLILGGALEYQRV 492
+ +K++ G S+S ++ GV+ K+ +H +M + D + IL E +
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP 281
Query: 493 ANH----LSSVD---TLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDIS 545
+SSV+ L E D K + + +V++ + A LL D+
Sbjct: 282 KTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLP 341
Query: 546 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSK 605
V + LE IA T +IVP L+ KLG C + ++F G K
Sbjct: 342 AVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEF---------GTTK--D 390
Query: 606 TLMFVEGCPKPLGCTILLKGANG-----------------DNLKKAKHVVQYGVFAAYHL 648
++ +E + T ++G+N NL K VV G A +
Sbjct: 391 RMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTM 450
Query: 649 ALETSFLADEGASLPQLPLKSPITVALPVKPSNIDRSISTIP-GFMTPATGKPLSPKLNN 707
+L S AD+ + Q + AL P + + P G ++ K L K++N
Sbjct: 451 SLAVSEEADKQRGIDQYAFRG-FAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISN 509
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 120/298 (40%), Gaps = 53/298 (17%)
Query: 381 VVEGHFRALVAQLLQ-VENLPVGDENDRESWLEII-----TSLSWEAATLLKPD-----M 429
+ EG F A + LQ +E + V E DRE+ +++ T + E A +L +
Sbjct: 111 ITEG-FEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVHAELADVLTEAVVDSIL 169
Query: 430 SKCGGMDPGEYVKVKCLACGRRSES--MVVKGVVCKKNVAHRRMTSKIDKPRFLILGGAL 487
+ +P + V+ + +SE+ +++G+V H M +++ L +L
Sbjct: 170 AIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSL 229
Query: 488 EYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKI---------DAHHPNVLLVEKSV 531
EY++ + L++ E ++ V KI D+ V++ +K +
Sbjct: 230 EYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGI 289
Query: 532 SRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQ-KLGYCDTFHV---- 586
++ D L + I + KR +ER+ G + S+D L LG+ +
Sbjct: 290 DPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGE 349
Query: 587 EKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFA 644
EKF F+E C P T+L+KG N L + K ++ G+ A
Sbjct: 350 EKF------------------TFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRA 389
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 134/332 (40%), Gaps = 63/332 (18%)
Query: 381 VVEGHFRALVAQLLQVENLPVG---DENDRESWL---------------EIITSLSWEAA 422
+++G+ A L +++ + VG D+ND+ L +I++ L EA
Sbjct: 127 IIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAV 186
Query: 423 TLLKPDMSKCGGMD--PGEYVKVKCLACGRRSESMVVKGVVCKKNV-AHRRMTSKIDKPR 479
+ + P + G + + ++V + G S S V+KG+V + H + S+ K +
Sbjct: 187 SHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHK 246
Query: 480 FLILGGALEYQRVANHLSSVDTLL---QQEMDHLKMAVTKIDAHHPNV-------LLVEK 529
+ L+ +AN + LL Q+ +D K +IDA + ++
Sbjct: 247 VAVFTCPLD---IANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGA 303
Query: 530 SVSRYAQDYLLAKDISLVLNIKRPL-LERIARCTGAQIVPSIDHLTSQKLGYCDTF---- 584
V A YL I LVL + L R+ R GA +P + T ++LG +T
Sbjct: 304 GVGELALHYLNRYGI-LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTME 362
Query: 585 ----HVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQY 640
V F +E G ++S+T TI+L+GA +NL + +
Sbjct: 363 IGGDRVTVFKQEQG-------EISRT------------STIILRGATQNNLDDIERAIDD 403
Query: 641 GVFAAYHLALETSFLADEGASLPQLPLKSPIT 672
GV A L + GA ++ L S IT
Sbjct: 404 GVAAVKGLMKPSGGKLLPGAGATEIELISRIT 435
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 22/132 (16%)
Query: 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHL 573
V KI V+L K + + I V K+ L RIAR TGA +V S+ +L
Sbjct: 285 VKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNL 344
Query: 574 TSQK------LGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGAN 627
++ LG CD KF ++ + ++G K +I+L+GAN
Sbjct: 345 EGEETFESSYLGLCDEVVQAKFSDDE-------------CILIKGTSKHSSSSIILRGAN 391
Query: 628 G---DNLKKAKH 636
D ++++ H
Sbjct: 392 DYSLDEMERSLH 403
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 30/207 (14%)
Query: 447 ACGR-RSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALE-------YQRVANHLSS 498
A GR + ESM++ G V + M +I + L +L+ Q V
Sbjct: 194 AHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEK 253
Query: 499 VDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERI 558
+D + Q+E D K + KI A NV+L + Y + V + + L+RI
Sbjct: 254 LDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRI 313
Query: 559 ARCTGAQIVPSIDHLTSQK------LGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEG 612
A+ +GA ++ ++ +L ++ LG + E+ ++ L+ ++
Sbjct: 314 AKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE-------------LILIKN 360
Query: 613 CPKPLGCTILLKGANG---DNLKKAKH 636
+++L+GAN D ++++ H
Sbjct: 361 TKARTSASVILRGANDFMCDEMERSLH 387
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 42 CYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYC 97
C C + F+V +R C CG FC++C + VP S + E + VC C
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASC 72
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 488 EYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQD-----YLLAK 542
E + N +D +L++E +L KI NVLL++KS+ R A + +L
Sbjct: 249 ENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKL 308
Query: 543 DISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKK 602
+I +V +I+R +E +++ G + + I+ T +L D +EE S G K
Sbjct: 309 NIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSAD------LVEEIDS---DGSK 359
Query: 603 LSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGA 660
+ + +P +++++GAN + + + + + L E +A GA
Sbjct: 360 IVRVTGIRNNNARP-TVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGA 416
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From
Mus Musculus
Length = 88
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 42 CYECDSQFTVFNRRHHCRLCGLVFCAKCTTNS--VPASFDESRTGREDSERIRVCNYC 97
CY C +FT+F + + C+ CG FC C + S VP R + + +VC C
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVP---------RAGNTQQKVCKQC 60
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 33.9 bits (76), Expect = 0.84, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 449 GRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHLSSV---DTLLQQ 505
G ++S + +G + K + + +I+ + LI ++ ++ S V T
Sbjct: 194 GSLADSYLDEGFLLDKKIGVNQ-PKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVA 252
Query: 506 EMDH-----LKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIAR 560
E++H +K V +I H N + + + Y + A + + + +ER+A
Sbjct: 253 EIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLAL 312
Query: 561 CTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCT 620
TG +I + DH KLG C K +EE G K L+ G CT
Sbjct: 313 VTGGEIASTFDHPELVKLGSC------KLIEE---VMIGEDK----LIHFSGVALGEACT 359
Query: 621 ILLKGANGDNLKKAK 635
I+L+GA L +A+
Sbjct: 360 IVLRGATQQILDEAE 374
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 698 GKPLSPKLNNELQKSNKGLISNSLSTTNVKSLSSFEGDNSTSHLEGPH------SQNMDM 751
G+ ++N EL+ + G++S S + N S F HL+G H S+NM
Sbjct: 106 GEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTC 165
Query: 752 QPSLSSTEATASSISLYPTK 771
+++S + TA++ ++ K
Sbjct: 166 IENIASVQTTATNKPIFDLK 185
>pdb|4H79|A Chain A, Crystal Structure Of Casb From Thermobifida Fusca
Length = 216
Score = 30.4 bits (67), Expect = 9.6, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 450 RRSESMVVKGVVCKKNVAHRRMTSKIDKP---RFLILGGALEYQRVANHLSSVDTLLQQE 506
RR + M +G + V +S+ID+P RF+ +G A+ Y+ +A L + TLL+++
Sbjct: 102 RRDDRMHQRGWGLGEAVRRLMPSSEIDEPLRKRFVQVGHAVTYKALAQRLREIVTLLRRD 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,139,883
Number of Sequences: 62578
Number of extensions: 2126466
Number of successful extensions: 4593
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4496
Number of HSP's gapped (non-prelim): 72
length of query: 1833
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1720
effective length of database: 7,902,023
effective search space: 13591479560
effective search space used: 13591479560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)