Query 000223
Match_columns 1833
No_of_seqs 559 out of 3580
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 1E-248 3E-253 2329.3 88.4 1577 37-1812 3-1598(1598)
2 COG5253 MSS4 Phosphatidylinosi 100.0 4.6E-72 1E-76 651.6 15.6 381 1404-1811 215-607 (612)
3 cd00139 PIPKc Phosphatidylinos 100.0 1.7E-66 3.7E-71 611.7 28.5 256 1535-1801 53-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 4.4E-65 9.5E-70 607.2 25.3 263 1522-1800 17-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 2.7E-57 5.9E-62 530.8 23.6 252 1536-1801 95-420 (420)
6 PLN03185 phosphatidylinositol 100.0 1.9E-54 4.1E-59 549.6 27.1 260 1524-1801 384-765 (765)
7 PF01504 PIP5K: Phosphatidylin 100.0 4.7E-55 1E-59 505.3 18.5 222 1566-1800 2-252 (252)
8 TIGR02344 chap_CCT_gamma T-com 100.0 7.1E-48 1.5E-52 490.7 29.9 308 342-665 81-414 (525)
9 KOG0364 Chaperonin complex com 100.0 1.2E-47 2.6E-52 442.3 17.1 309 337-663 78-412 (527)
10 TIGR02339 thermosome_arch ther 100.0 3.9E-46 8.4E-51 474.2 30.0 307 342-665 81-413 (519)
11 cd03343 cpn60 cpn60 chaperonin 100.0 2.1E-45 4.6E-50 467.8 29.9 307 342-665 80-410 (517)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.3E-45 7.2E-50 466.1 30.5 307 342-665 88-420 (526)
13 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.9E-44 6.3E-49 457.6 30.6 307 342-665 73-411 (527)
14 PTZ00212 T-complex protein 1 s 100.0 6.1E-44 1.3E-48 454.5 30.7 300 342-665 92-419 (533)
15 TIGR02343 chap_CCT_epsi T-comp 100.0 7.3E-44 1.6E-48 453.3 30.4 307 342-665 92-424 (532)
16 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8.9E-44 1.9E-48 452.9 30.0 301 342-665 81-412 (522)
17 cd03334 Fab1_TCP TCP-1 like do 100.0 1.1E-43 2.4E-48 413.2 28.2 259 388-659 2-261 (261)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 1.7E-43 3.7E-48 449.0 31.3 304 342-665 81-419 (531)
19 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.3E-43 5E-48 448.0 31.6 300 342-665 80-407 (517)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.1E-43 4.5E-48 449.1 30.2 306 342-665 73-409 (515)
21 TIGR02342 chap_CCT_delta T-com 100.0 3.6E-43 7.8E-48 446.2 30.1 311 337-665 68-410 (517)
22 TIGR02340 chap_CCT_alpha T-com 100.0 1.3E-42 2.9E-47 442.8 31.1 307 342-665 77-415 (536)
23 TIGR02345 chap_CCT_eta T-compl 100.0 7E-43 1.5E-47 444.1 28.2 302 342-665 82-413 (522)
24 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.3E-43 1.6E-47 439.8 26.3 274 342-665 81-373 (480)
25 TIGR02341 chap_CCT_beta T-comp 100.0 3E-41 6.6E-46 428.2 31.8 300 342-665 81-408 (519)
26 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.5E-41 1.4E-45 422.3 24.8 282 342-665 77-376 (484)
27 KOG0361 Chaperonin complex com 100.0 4.6E-41 1E-45 381.4 20.0 308 336-666 78-417 (543)
28 TIGR02346 chap_CCT_theta T-com 100.0 8.2E-40 1.8E-44 416.2 30.6 308 337-665 77-411 (531)
29 cd00309 chaperonin_type_I_II c 100.0 2.1E-39 4.6E-44 408.2 26.4 270 342-665 73-359 (464)
30 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.3E-38 2.8E-43 400.5 26.5 272 342-665 73-363 (472)
31 KOG0363 Chaperonin complex com 100.0 1E-38 2.2E-43 360.1 21.6 305 335-663 77-410 (527)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.6E-38 3.4E-43 402.9 25.6 300 342-664 54-377 (485)
33 COG0459 GroL Chaperonin GroEL 100.0 4.1E-38 8.8E-43 394.7 25.9 301 342-665 76-407 (524)
34 KOG0358 Chaperonin complex com 100.0 5.2E-38 1.1E-42 356.2 19.8 314 336-666 84-428 (534)
35 KOG0360 Chaperonin complex com 100.0 9.3E-37 2E-41 355.7 17.2 313 335-664 76-420 (545)
36 PRK00013 groEL chaperonin GroE 100.0 3.9E-35 8.4E-40 372.5 26.8 276 342-665 79-421 (542)
37 PRK12849 groEL chaperonin GroE 100.0 4.4E-35 9.5E-40 372.0 26.8 275 342-665 79-421 (542)
38 PTZ00114 Heat shock protein 60 100.0 6.3E-35 1.4E-39 372.3 27.2 275 342-665 91-434 (555)
39 KOG0359 Chaperonin complex com 100.0 7E-36 1.5E-40 344.9 15.1 304 341-664 81-409 (520)
40 PRK12851 groEL chaperonin GroE 100.0 7.9E-35 1.7E-39 370.0 26.2 276 342-665 80-422 (541)
41 TIGR02348 GroEL chaperonin Gro 100.0 1.1E-34 2.3E-39 368.2 26.0 275 342-665 78-420 (524)
42 cd03344 GroEL GroEL_like type 100.0 1.7E-34 3.7E-39 365.8 27.4 275 342-665 77-419 (520)
43 PRK12852 groEL chaperonin GroE 100.0 6E-34 1.3E-38 363.0 26.0 276 341-665 79-422 (545)
44 PRK12850 groEL chaperonin GroE 100.0 7.7E-34 1.7E-38 361.2 26.9 276 342-665 80-422 (544)
45 CHL00093 groEL chaperonin GroE 100.0 2.9E-33 6.4E-38 355.5 24.0 278 341-665 78-421 (529)
46 PRK14104 chaperonin GroEL; Pro 100.0 8.7E-33 1.9E-37 351.4 25.8 275 342-665 80-422 (546)
47 cd03333 chaperonin_like chaper 100.0 1.4E-32 3E-37 311.5 23.2 193 408-651 17-209 (209)
48 PLN03167 Chaperonin-60 beta su 100.0 3.3E-33 7.2E-38 356.9 20.0 290 341-665 134-476 (600)
49 KOG0362 Chaperonin complex com 100.0 9.1E-32 2E-36 316.6 23.4 303 341-666 90-415 (537)
50 KOG0357 Chaperonin complex com 99.9 2.5E-27 5.5E-32 267.7 11.9 204 342-664 84-287 (400)
51 KOG0356 Mitochondrial chaperon 99.8 4.8E-20 1E-24 221.8 17.2 284 342-664 93-435 (550)
52 PF01363 FYVE: FYVE zinc finge 99.5 1.3E-15 2.9E-20 142.7 2.3 68 31-102 1-68 (69)
53 smart00064 FYVE Protein presen 99.4 4.6E-14 1E-18 131.9 3.7 67 30-102 1-67 (68)
54 KOG1729 FYVE finger containing 99.3 1.9E-13 4.2E-18 159.1 1.4 73 24-103 153-226 (288)
55 PTZ00303 phosphatidylinositol 99.3 5.8E-13 1.3E-17 162.5 4.4 77 28-104 448-532 (1374)
56 KOG1819 FYVE finger-containing 99.3 3.8E-13 8.2E-18 157.5 2.3 70 25-100 887-961 (990)
57 KOG1818 Membrane trafficking a 99.2 2.3E-12 5E-17 160.7 2.7 66 30-104 159-224 (634)
58 cd00065 FYVE FYVE domain; Zinc 99.0 1.9E-10 4.1E-15 103.8 2.2 55 39-99 2-56 (57)
59 KOG1842 FYVE finger-containing 98.8 5.5E-10 1.2E-14 132.2 -1.6 73 32-105 173-262 (505)
60 KOG1841 Smad anchor for recept 98.7 6.3E-09 1.4E-13 134.0 3.7 53 27-79 545-597 (1287)
61 KOG1843 Uncharacterized conser 98.3 2E-07 4.4E-12 109.9 2.9 66 30-102 151-219 (473)
62 KOG1409 Uncharacterized conser 98.0 3E-06 6.6E-11 98.7 2.2 71 27-106 273-354 (404)
63 KOG4424 Predicted Rho/Rac guan 97.5 8.5E-05 1.8E-09 92.1 4.1 61 31-100 409-470 (623)
64 KOG1811 Predicted Zn2+-binding 97.2 3.6E-05 7.8E-10 94.2 -2.8 68 28-101 311-383 (1141)
65 KOG0230 Phosphatidylinositol-4 94.1 0.045 9.8E-07 75.1 4.5 99 922-1034 659-757 (1598)
66 PF02318 FYVE_2: FYVE-type zin 93.6 0.035 7.6E-07 58.1 1.9 52 39-103 54-106 (118)
67 KOG1729 FYVE finger containing 87.7 0.13 2.8E-06 61.5 -0.9 69 31-100 12-81 (288)
68 KOG1841 Smad anchor for recept 82.7 1.4 3E-05 59.8 4.8 55 30-103 648-702 (1287)
69 KOG0993 Rab5 GTPase effector R 78.9 0.12 2.6E-06 62.3 -5.9 68 32-107 461-530 (542)
70 PRK00464 nrdR transcriptional 61.2 3.9 8.4E-05 45.0 1.2 18 1151-1168 111-128 (154)
71 PF07975 C1_4: TFIIH C1-like d 58.6 2.3 4.9E-05 38.1 -0.9 30 41-70 1-36 (51)
72 KOG3576 Ovo and related transc 57.5 2.9 6.2E-05 46.9 -0.6 35 35-69 113-159 (267)
73 PF09538 FYDLN_acid: Protein o 55.5 7.2 0.00016 40.4 1.9 33 30-65 3-36 (108)
74 TIGR02300 FYDLN_acid conserved 53.8 7.8 0.00017 40.9 1.8 33 30-65 3-36 (129)
75 TIGR00622 ssl1 transcription f 51.0 10 0.00022 39.5 2.1 34 38-71 54-97 (112)
76 KOG4275 Predicted E3 ubiquitin 49.5 2.8 6.1E-05 49.3 -2.3 52 34-100 39-90 (350)
77 PLN02667 inositol polyphosphat 46.7 35 0.00076 41.5 6.1 76 1578-1671 17-99 (286)
78 KOG0978 E3 ubiquitin ligase in 45.6 2.9 6.3E-05 55.4 -3.4 43 38-99 642-686 (698)
79 PF07450 HycH: Formate hydroge 45.6 9.5 0.0002 40.5 1.0 22 1727-1755 24-45 (131)
80 PRK15084 formate hydrogenlyase 44.8 10 0.00022 40.2 1.1 22 1727-1755 26-47 (133)
81 PF13719 zinc_ribbon_5: zinc-r 43.9 12 0.00026 31.3 1.2 26 40-65 3-35 (37)
82 PF13717 zinc_ribbon_4: zinc-r 43.4 12 0.00026 31.1 1.1 25 41-65 4-35 (36)
83 PF02579 Nitro_FeMo-Co: Dinitr 42.6 65 0.0014 31.7 6.4 44 516-560 48-91 (94)
84 COG1997 RPL43A Ribosomal prote 42.4 22 0.00048 35.2 2.9 43 916-987 32-74 (89)
85 KOG0320 Predicted E3 ubiquitin 40.5 3.8 8.3E-05 45.4 -2.9 49 38-102 130-178 (187)
86 smart00154 ZnF_AN1 AN1-like Zi 40.3 15 0.00032 31.2 1.1 26 42-69 1-26 (39)
87 cd01143 YvrC Periplasmic bindi 40.0 66 0.0014 35.9 6.8 52 514-565 53-111 (195)
88 PF06296 DUF1044: Protein of u 38.9 1E+02 0.0022 32.8 7.3 78 1542-1619 2-107 (120)
89 TIGR03659 IsdE heme ABC transp 36.6 66 0.0014 38.8 6.4 52 514-565 84-141 (289)
90 PRK09534 btuF corrinoid ABC tr 35.4 75 0.0016 39.9 6.8 52 514-565 112-170 (359)
91 COG5151 SSL1 RNA polymerase II 35.2 17 0.00036 43.3 0.9 38 33-70 356-403 (421)
92 cd01144 BtuF Cobalamin binding 34.6 88 0.0019 36.4 6.9 52 514-565 50-108 (245)
93 PF09947 DUF2180: Uncharacteri 33.0 20 0.00043 34.2 0.9 61 41-101 2-66 (68)
94 cd00851 MTH1175 This uncharact 32.5 91 0.002 31.2 5.7 38 513-551 55-92 (103)
95 PF01485 IBR: IBR domain; Int 32.3 31 0.00067 31.5 2.1 34 39-72 18-57 (64)
96 PF15135 UPF0515: Uncharacteri 31.4 77 0.0017 37.3 5.3 36 33-68 126-168 (278)
97 PHA02768 hypothetical protein; 30.0 23 0.00049 32.5 0.7 25 41-65 7-41 (55)
98 KOG2164 Predicted E3 ubiquitin 29.8 15 0.00033 46.8 -0.5 51 40-103 187-237 (513)
99 COG1433 Uncharacterized conser 29.7 1.4E+02 0.003 31.9 6.5 51 513-564 57-107 (121)
100 PRK00420 hypothetical protein; 26.6 37 0.00079 35.6 1.6 25 40-64 24-49 (112)
101 cd00562 NifX_NifB This CD repr 26.6 1.4E+02 0.003 29.8 5.8 37 514-551 54-90 (102)
102 cd01138 FeuA Periplasmic bindi 25.7 1.2E+02 0.0026 35.5 6.0 51 514-565 59-113 (248)
103 KOG1314 DHHC-type Zn-finger pr 25.1 32 0.0007 42.0 1.1 10 1030-1039 142-151 (414)
104 PF01497 Peripla_BP_2: Peripla 24.2 1.7E+02 0.0037 33.6 6.8 51 515-565 54-112 (238)
105 KOG3795 Uncharacterized conser 23.9 38 0.00082 37.4 1.2 23 48-70 8-33 (230)
106 cd04743 NPD_PKS 2-Nitropropane 23.5 1.9E+02 0.0042 35.8 7.2 56 512-568 73-128 (320)
107 PRK00398 rpoP DNA-directed RNA 22.9 45 0.00098 29.1 1.3 25 41-65 5-31 (46)
108 PF12226 Astro_capsid_p: Turke 22.7 51 0.0011 36.3 1.9 50 1541-1596 102-154 (230)
109 PF10571 UPF0547: Uncharacteri 22.3 42 0.00091 26.1 0.8 23 41-65 2-24 (26)
110 KOG3799 Rab3 effector RIM1 and 22.2 34 0.00073 36.3 0.4 51 40-101 66-117 (169)
111 PF07282 OrfB_Zn_ribbon: Putat 22.0 60 0.0013 30.6 2.0 28 38-65 27-56 (69)
112 cd01146 FhuD Fe3+-siderophore 21.0 1.9E+02 0.0041 34.0 6.5 52 514-565 58-115 (256)
113 KOG3173 Predicted Zn-finger pr 20.3 44 0.00096 37.4 0.9 28 39-69 105-132 (167)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-248 Score=2329.28 Aligned_cols=1577 Identities=49% Similarity=0.747 Sum_probs=1143.9
Q ss_pred CCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhcccCCCCCCCCCC
Q 000223 37 QSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQGIGALDNGTTQAP 116 (1833)
Q Consensus 37 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~~~~~~~~~~~~~ 116 (1833)
..+..|+.|. +..+||||||.||++||++|. +.. ...+|||..|+.++.++......
T Consensus 3 ~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~------~~~--------~~~i~~~~~~~~~~~~~~~~~~~------ 59 (1598)
T KOG0230|consen 3 QSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQ------DSP--------ETSIRVCNECRGQWEQGNVAPSD------ 59 (1598)
T ss_pred ccccchhccc---cccccCCCCcccCceeccccC------CCC--------ccceeehhhhhhhccccCCCCcc------
Confidence 5577899999 788999999999999999997 111 24899999999998876443311
Q ss_pred CCCCCCCCCcCccccCCCCCccccCCCccccccCCCCCccccCCcCCCCCCCcccCCchhhhhhccccCCCCCCccchhc
Q 000223 117 SPGLSPSASATSLASTKSSCTCYSSSGTVSSTPYSTGPYQHVPYTSCVSPRQSEQMDPLIVEQENVKSESSTNSSAAIVV 196 (1833)
Q Consensus 117 ~~~ls~s~s~~s~~s~~ss~t~~ss~~~~~S~~~s~g~~~~~~~ss~~s~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~ 196 (1833)
.+.++++.. ++ .+ ++.++.+ +++. .+..-++. -+..+.++...-.|.-.+.++..-- .+-+.
T Consensus 60 --~~~~~~~~~---~~-~s-~~~~s~s-l~s~--~n~r~~~~-------m~d~s~~ec~~~~~~~~t~Rr~~~~-~gqi~ 121 (1598)
T KOG0230|consen 60 --RVHTSPSPT---AN-VS-TASNSSS-LASS--LNYRDKEN-------MPDSSSKECYDCEQKFETFRRKHHC-CGQIF 121 (1598)
T ss_pred --eeccCCCCC---CC-cc-cccccch-hhcc--cCcccccc-------CCccccchhhhhccchhhhhccccc-Ccccc
Confidence 111111111 00 11 1111111 2222 11111111 2333445666666766666555411 11022
Q ss_pred cCCCCcCCccccCCCCcccccccccccccccCCCCCCCCCCCccccCccccCCCceecccccccccccccccCCcccccc
Q 000223 197 NSSSNQSGFSMNRSDDEDDDYRIYTSDLDTRQYSLPNDYYGDVNIDNIDHTYGAQEVDHVRENINRRSLSCELSENFDTQ 276 (1833)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1833)
..++ +.=..-|+|+|-|.+..|..|-...|.+..+.||++..-++.+++...+.+..-++..-++..+.+.+.+....
T Consensus 122 ~ss~--~~~~~~~~~~e~d~c~~~~~~~~~sss~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~p~~~~~~~l 199 (1598)
T KOG0230|consen 122 CSSC--IDGMSIRCDGELDYCSRYVEDFAKSSSSEMNQYDGPLQQNKHDDVPRARLGRKTSVGYEESLSSFPYTSDLNSL 199 (1598)
T ss_pred CCcc--cCCcccccccccchhHHHhhhhhccCCcCCCccccchhccCCCCCcccccccccccccccccCCCCCchhHHHH
Confidence 2222 22223389999999999999999999999999999999988888888777765555432233333322333333
Q ss_pred cccccccccccccCCCCccccCC-CCcccccccCCCCCccCCCccccCCCCCCchhhhhhcccccccccCCC-CCccccc
Q 000223 277 GLKKIKEHGDKIHERYDVDECEA-PLYDEEATEYEPVDFEKEGLLWIPPEPADEEDEREAILFDDDDDEGGT-GEWGYLR 354 (1833)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~w~pp~~~~~~d~~~~~~~~~~~~ddev-GDGTT~~ 354 (1833)
+-......+. +++...+.+|. +.+..++...+++||++||++|.||+|++|+||+|++++++|+++.+. |.|+.++
T Consensus 200 ~~~~~~~s~~--~~n~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D~~~~~~~~~ 277 (1598)
T KOG0230|consen 200 LQESNEKSQR--DENCGRSVIEFSSPNDEEEDEVEILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGDTSGKWNPLR 277 (1598)
T ss_pred Hhhhhhhccc--CccccccccccCCccccccccccccchhhccCCCCCCCCCcccccchhcccccccccccccccccccc
Confidence 3332222222 24455678886 466666666689999999999999999999999999997755543333 6666644
Q ss_pred cceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHhhcccCCCCCCC
Q 000223 355 SSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAATLLKPDMSKCGG 434 (1833)
Q Consensus 355 ~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~~~w~~~l~~L~~eA~~~V~~d~~~~~~ 434 (1833)
.+...-+.+...+.....+....+..+..+|+++++++|+..+.+++..+...++|.++++.|+|+|+..++|+.+.++.
T Consensus 278 ~s~s~s~~~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~ 357 (1598)
T KOG0230|consen 278 LSNSFSAPEYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGL 357 (1598)
T ss_pred ccCccCCCCccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCC
Confidence 44444444444444444555567888999999999999999999988766667899999999999999999999999999
Q ss_pred CCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEeccccchhccccChhhHHHHHHHHHHHHHHHH
Q 000223 435 MDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHLSSVDTLLQQEMDHLKMAV 514 (1833)
Q Consensus 435 mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v 514 (1833)
|||.+|||||||+||+..||++|+||||.|+++||+|.+++++|||||+.|+|+|+|+.+++.+++++++||++||+.+|
T Consensus 358 md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~v 437 (1598)
T KOG0230|consen 358 MDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVV 437 (1598)
T ss_pred cCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeecccc
Q 000223 515 TKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHG 594 (1833)
Q Consensus 515 ~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~ 594 (1833)
.+|...+||||+|+|+|+++|+++|..+||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++|
T Consensus 438 arI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h- 516 (1598)
T KOG0230|consen 438 ARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH- 516 (1598)
T ss_pred HHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCCCCCCCcccc
Q 000223 595 SAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLKSPITVA 674 (1833)
Q Consensus 595 ~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~~~~~~~~~~ 674 (1833)
+..||+|||+||++++||||+|||++.++|+++|++++++++|+||+++|.+||+|.||++....+....++.
T Consensus 517 -------k~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~ 589 (1598)
T KOG0230|consen 517 -------KPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVE 589 (1598)
T ss_pred -------cchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceec
Confidence 4679999999999999999999999999999999999999999999999999999999998865444333232
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCcchhhhccccccccccccccccccccccCCCCCCcccCCCCCCCCCCCCC
Q 000223 675 LPVKPSNIDRSISTIPGFMTPATGKPLSPKLNNELQKSNKGLISNSLSTTNVKSLSSFEGDNSTSHLEGPHSQNMDMQPS 754 (1833)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~ 754 (1833)
.+ ...+.++++|+++..+++.........++..++..+ ..+..+.+|...++
T Consensus 590 ~~----~~~~~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~------------------------~~~~ls~sp~~~~~ 641 (1598)
T KOG0230|consen 590 TS----IINRSISTSPGETDSTAEKAPVEALQVEPNRFNGAL------------------------SSELLSSSPFLEFP 641 (1598)
T ss_pred cc----ccccccccCCCCCcchhcccchhhhccchhhhhccc------------------------ccceeecccccccC
Confidence 22 345677888877654443332111122223333222 22223333433333
Q ss_pred cchhhhccccccccCC------ccc-cccccccCCCCCCCchhhhhcCCCccccccccccccccCCCCCCCccc-ccccc
Q 000223 755 LSSTEATASSISLYPT------KQD-ISNFYQKDSSPKHASKEEIKVGPKESLKFLMDDNAVSNCFGTTEPSRR-VAGWS 826 (1833)
Q Consensus 755 ~~~~~~~~~~~~~~~~------~~~-i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 826 (1833)
++. ....+..-+++. ++. ...++.+.... ...-.++ ...+..+ +.+ ...+ .....
T Consensus 642 ~~~-~~i~P~~~~~e~~~~~~~~~~~~~~lv~~~es~--------~~~~~~s-----~~~~~~~-l~e--~~~~~~~~~~ 704 (1598)
T KOG0230|consen 642 LDL-LEIAPGELVIETRLSSYSKGPKQNGLVPAHESV--------LNDLHES-----TLSILSK-LPE--TRSGTHEGNE 704 (1598)
T ss_pred CCc-cccCCccceeecchhhhcCchhhcccccccccc--------ccccccc-----ccccccc-ccc--hhcccchhcc
Confidence 330 000000000111 000 00111100000 0000000 0000000 000 0000 00000
Q ss_pred cccCccccccCCCCccccccccccCCcccccCCCCCCCCCCCCCCceEEEEEeeeecCCCCccCCCeEEEEeccCCCCCC
Q 000223 827 LVDGNAFASNHQASPELVSSKQDSNNNNEERGSSKEEFPPSPSDHRSILVSLSTRCVWKGSVCERPHLFRIKYYGSTDNP 906 (1833)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~hQsI~Vl~Ss~~~~~~~~C~~p~l~~i~fY~~~D~t 906 (1833)
-+++- ..+.....+..+ ...+++.. ..++.++|.+||+|+||||++|++++.+|++|||++|+|||++|++
T Consensus 705 ~k~~~----~~~~~~~~~~~~--~~~~~e~~---~s~~~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~ 775 (1598)
T KOG0230|consen 705 DKGPG----LEPELANNQNIQ--RPEETEEQ---SSKDALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKP 775 (1598)
T ss_pred ccCcc----cccccccccccc--chhhhhhh---hcccCCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccch
Confidence 00000 000000000000 00122222 4566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEe
Q 000223 907 LGRFLRDNLFDQSYRCRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVV 986 (1833)
Q Consensus 907 LG~fLe~~~~~~~~~C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~ 986 (1833)
|||||+++||++.|.|++|.+||++|+|||||++|+++|+|++++.. +||+.+|+|||||||++|++. ||+|++|+
T Consensus 776 lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~ 851 (1598)
T KOG0230|consen 776 LGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVV 851 (1598)
T ss_pred HhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEeeccccc-cccccCceEEEEeccccCCCC---CCCcceeE
Confidence 99999999999999999999999999999999999999999999876 999999999999999999975 89999999
Q ss_pred ccchhhcccHHHHHhhhccCccccCCccCCCCccccceeeecccCCEEEEEEEeeeeeeEEecCCCceeeccCchhhHHH
Q 000223 987 MSDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGFGQMVACFRYASIDVNSVYLPPPKIEFNYDTQGWIKE 1066 (1833)
Q Consensus 987 mS~~tw~lSFGKfLEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~va~f~y~~I~v~ev~lPp~~l~~~~~~~~~l~~ 1066 (1833)
||++||++||||||||+||+|++++|+++|||+||||||||||||+|||+|+|++|++|+|++||.+|+|++..+.|+++
T Consensus 852 ~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~ 931 (1598)
T KOG0230|consen 852 MSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQE 931 (1598)
T ss_pred cchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchh
Q 000223 1067 EANEVRRRAELLFKDVRHTLQDLSKKIAVGSEDGSMKTAEARVHISELEGMQQKDEVEFEESLQQALCKEVKLGLPAIDI 1146 (1833)
Q Consensus 1067 e~~~v~~k~~~~~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~i~el~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~di 1146 (1833)
|.++|+.|++.+|++|.++|.+|+.+. . + +..+.+|+.+|.+|+.+|++.|+.++.+....++..+|+
T Consensus 932 e~k~v~~k~~~~~n~v~~~l~~i~~~~---~-----~----~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~ 999 (1598)
T KOG0230|consen 932 EIKEVIEKGEELYNEVLERLSRIAEKD---E-----N----RPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDI 999 (1598)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc---c-----c----cchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhH
Confidence 999999999999999999999999851 1 1 346889999999999999999999999888778999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhhhhhhcccCCcCccccccCCCCCCCCCCcccccCCC--CCCCCCccccCCCccC
Q 000223 1147 LEINRLRRQILFHSCVWDQRLIRAASLVNSYLREGTNAFVPKLKEKPVSPVEKPVDVNAAFK--PSKGFSSFVSLPLEVK 1224 (1833)
Q Consensus 1147 l~lN~l~r~l~~~~~~Wd~rl~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1224 (1833)
+.+|++||.|++.++.|+.||+.+..+.| |.... . +..++. .+ ......... +.+.......
T Consensus 1000 l~l~~~rr~l~~~s~~w~~~l~s~~~~~k--~~~~~-~--~~~~~~-~~----~~~~~~~r~p~~~k~~~~~~~------ 1063 (1598)
T KOG0230|consen 1000 LALNRDRRALLASSYLWDERLISLSKSLK--LESSK-D--TKPKES-ET----NSTAKRKRSPEPQKGVDEDSF------ 1063 (1598)
T ss_pred HHHHHHHHHHHhhhccccccchhhhhhhc--ccccc-c--cccccc-cc----cCccccccCchhhcccccccc------
Confidence 99999999999999999999998776666 22110 0 000100 00 000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCCCCCccccccccCCCCCCCCCCCCccchhhhhccccCCCCcccccchhhhhhcc
Q 000223 1225 PGAHCNRGISGDIHEPHRVQKESGVDQDPSYKEADQFLSSSESVSYKPEPQESGKLVRRALSDGEFPKMADLSDTLDAAW 1304 (1833)
Q Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~e~~~~~rr~~~~~~~~~~~~~s~~~d~~~ 1304 (1833)
.++++...........+.+.+...+ +. +. ...+....+.....+..+.++.+.+... .....+.+.++.+|
T Consensus 1064 ---~~~~~s~~~~~~~~~lp~~~~s~~~---d~-~~-~~~~~~~~~~~s~~~~~~~v~n~~s~~~-~~~~~~~~~l~~~~ 1134 (1598)
T KOG0230|consen 1064 ---LTDSSSDVSSLEHLNLPLPEDSNST---DT-GL-SGPSEVLEDNESIDEMLGSVRNTYSLAN-KVRKILKQILDSAT 1134 (1598)
T ss_pred ---ccccccccCccccccCCCCCccccc---ch-hc-cCcccccccccchhhcccccccccchhh-HHHHHHHHhccccc
Confidence 0000000000000000000000000 00 00 0000000000000111122222222111 12334555566666
Q ss_pred cCCCCCCcccCcCCCCCCCCCCccccccccccccccccccCCceeecccCccccccCCCCCCCcccccCCCchhhhh-hh
Q 000223 1305 TGENHPANVIGKESGYSLPDPTLVDSSSKLNSVAASTAEQGGLEVVRSLSSVSSTKGTENMTNSRSLVGMPFSSFYS-SF 1383 (1833)
Q Consensus 1305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~-~~ 1383 (1833)
.+.+..+..+ |.......+ + .+. .....+- ...+...|++.||.+++. ..
T Consensus 1135 ~g~r~~~~~~------------------P~s~~~~~~-~-------~~~-~~~~~~~--~e~~~~~~~e~~~~~~~~~~~ 1185 (1598)
T KOG0230|consen 1135 IGNRANPKSS------------------PFSGQDHST-D-------LPL-ESNPIHV--LEKELSSWIEDPLTNMYYREA 1185 (1598)
T ss_pred ccccccCCCC------------------CCchhhhcc-c-------ccc-ccCCccc--cccccHHHHhhhhhhHhHHHH
Confidence 6654321111 000000000 0 000 0000011 112456789999998765 55
Q ss_pred cccCcccccccc-cccCCCcccCcchhhhhccCccccccCCCCCceeeecCCCchhhhhhccCChhHHHHHHHHHHhhhh
Q 000223 1384 NKNSSLNAQKLT-VSEYNPTYVMSLWDSERLSGARLFLPVGVNDTIVPVYDDEPTSVIVYTLVSSDYHVQISEFERAKDA 1462 (1833)
Q Consensus 1384 ~~~~~~~~~k~~-l~~~~p~~~s~~~~~~~~~~~~l~~P~~~~d~~V~V~edEPSSiIAyaLss~dY~~~l~~~~~~~~~ 1462 (1833)
.+....+.++.. .....|+++++......+.+++|++|++.+|.+|+||||||+|+|||||++++|..+..+.
T Consensus 1186 ~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p------ 1259 (1598)
T KOG0230|consen 1186 TKELSLNSQKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQESSP------ 1259 (1598)
T ss_pred HHHHHhhcchhhcccccCCcCcccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCCCCC------
Confidence 444444445543 2367788888876666688899999999999999999999999999999998877654220
Q ss_pred hhhccccccccccccccccccCCCCcccccccccccccccccCCCCCCC---CCCCCcc--CCCceeEEEecCCCCCcce
Q 000223 1463 ADSAAASAIFDSVNLLSVSSFDDTTSDRDKSLGSADEAVFSTSGSRGSQ---VLDPLSY--TKDLHARISFTDDGLLGKV 1537 (1833)
Q Consensus 1463 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~s~d~~~~~~~~~~~~~---~~~~~~~--~~~~h~~~~f~~~~~~~~~ 1537 (1833)
..+.....+ +++- ..++ ...+.+.-+.....++..++. ..+.+.. ....|++++|.+ |++
T Consensus 1260 ---~~sis~~~S-~~~~--~~s~-----~~e~~~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~e----gk~ 1324 (1598)
T KOG0230|consen 1260 ---GLSISFSLS-NLQG--RLSK-----ISEFDDTKSESLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSE----GKA 1324 (1598)
T ss_pred ---Ccccccccc-cccc--chhh-----hhhhhhhhhccccccccchhhhcchhhccccccccccceeeeccC----Cce
Confidence 000000000 0000 0000 000000000000111111111 1112222 445788888877 569
Q ss_pred eEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHH
Q 000223 1538 KYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLS 1617 (1833)
Q Consensus 1538 ~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~ 1617 (1833)
+|+|+||||++|++||+.||.++++||+||+||.+|.++|||||++|+||.|+|||||+|++.|+++|++|||+||+||.
T Consensus 1325 k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~ 1404 (1598)
T KOG0230|consen 1325 KYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLT 1404 (1598)
T ss_pred EEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEEEeecccCCCccceeeeCCCCcccccccCCCCCCccccchhhhhh
Q 000223 1618 ESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRRNITRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEA 1697 (1833)
Q Consensus 1618 ~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~ 1697 (1833)
++++++.||+||||||+|||.+|++++|++.||++||||||||+++++|+||||||+|||+++.+++.+.||||+||+++
T Consensus 1405 ~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~ 1484 (1598)
T KOG0230|consen 1405 ESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEM 1484 (1598)
T ss_pred HHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeeccceeEeeehhhhhhccchhhHHHHHhhhhcccCCCCC
Q 000223 1698 MPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKN 1777 (1833)
Q Consensus 1698 ~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~niMDYSLLvGi~~~~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~ 1777 (1833)
++++||||++++|+.|.++|||||.||+++||||||||||||+++++||+||||||||||||||||+|||..| +||+++
T Consensus 1485 ~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sG-l~gpk~ 1563 (1598)
T KOG0230|consen 1485 MWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSG-LGGPKN 1563 (1598)
T ss_pred hhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccc-cccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 678899
Q ss_pred CCCcccChHHHHHHHHHHHHHhcccCCCccCCCcc
Q 000223 1778 TSPTVISPQQYKKRFRKAMTTYFLMLPEQWTPPSI 1812 (1833)
Q Consensus 1778 ~~~Tvv~P~~Y~~RF~~~m~~~f~~vp~~W~~~~~ 1812 (1833)
..||||+|++|++||++||++||++|||+|+++|.
T Consensus 1564 ~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg~g~ 1598 (1598)
T KOG0230|consen 1564 KQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTGLGV 1598 (1598)
T ss_pred CCCceeCHHHHHHHHHHHHhheeeecCCcccCCCC
Confidence 99999999999999999999999999999999873
No 2
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-72 Score=651.60 Aligned_cols=381 Identities=35% Similarity=0.555 Sum_probs=313.9
Q ss_pred cCcchhhh-hccCccccccCC-----CCCceeeecCCCchhhhhhccCChhHHHHHHHHHHhhhhhhhcccccccccccc
Q 000223 1404 VMSLWDSE-RLSGARLFLPVG-----VNDTIVPVYDDEPTSVIVYTLVSSDYHVQISEFERAKDAADSAAASAIFDSVNL 1477 (1833)
Q Consensus 1404 ~s~~~~~~-~~~~~~l~~P~~-----~~d~~V~V~edEPSSiIAyaLss~dY~~~l~~~~~~~~~~~~~~s~~~~~~~~~ 1477 (1833)
++.||+.+ +..+.++.+|.+ +.++.|+++||||||+|||+|+++||+.++...++.+ .++...- ...
T Consensus 215 ls~~~~e~nS~n~~p~~~~s~p~~~~~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se-~~De~~l----~~~-- 287 (612)
T COG5253 215 LSNFWAERNSYNWKPLVYPSCPSEHIFSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSE-TMDERLL----NGM-- 287 (612)
T ss_pred hhhhhccccccCCCCccCCCCCCCCCcCccccccccCCcchhhhccccchhHHHHHHhhhhhh-cchhhhc----ccc--
Confidence 45666654 333445555544 4688899999999999999999999999997654421 1221100 000
Q ss_pred ccccccCCCCcccccccccccccccccCCCCC--CCCCCCCccCCCceeEEEecCCCCCcceeEEEEEcCHHHHHHHHHH
Q 000223 1478 LSVSSFDDTTSDRDKSLGSADEAVFSTSGSRG--SQVLDPLSYTKDLHARISFTDDGLLGKVKYTVTCYFAKRFDALRRM 1555 (1833)
Q Consensus 1478 ~~~~~~~~~~~~~~~s~~s~d~~~~~~~~~~~--~~~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~ 1555 (1833)
...++++++.....++. |.+. +..+..|...++.|.+++|+.+ .+.|+|++|||++|++||++
T Consensus 288 --------~le~gh~n~~~synmlt---girvtlsr~e~iM~~~tdth~~e~~~eg----~~~~s~K~y~~e~Fr~lR~l 352 (612)
T COG5253 288 --------PLEGGHRNPQESYNMLT---GIRVTLSRIEEIMIKKTDTHLNEQFEEG----LYEFSCKDYFPEVFRELRAL 352 (612)
T ss_pred --------ccccccccchhhhhhhh---hhHHHHHHHHHHhcCCcCccchhhcccc----ceeeeHHhhCHHHHHHHHHH
Confidence 01112333332222222 2221 1123356777899999999874 58999999999999999999
Q ss_pred cCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEE
Q 000223 1556 CCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIY 1635 (1833)
Q Consensus 1556 ~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y 1635 (1833)
||+++. |+.++++|..|...|||||||||||.|.|||||||++.|+..|..++-+|+.|+.. ++.|+||||||+|
T Consensus 353 ~g~~~a-lvsl~sryil~E~~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~y 427 (612)
T COG5253 353 CGCDEA-LVSLLSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFY 427 (612)
T ss_pred hCCcHH-HHHHHhhhheeccCCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhcee
Confidence 999886 99999999999999999999999999999999999999996666555555555554 4669999999999
Q ss_pred EEeeec-cCCCceEEEEEEEeecccCCCccceeeeCCCCcccccccCCCCCCccccchhhhhhCCCCCeeeChHHHHHHH
Q 000223 1636 QVASKH-FKGGKESKMDLLVMENLLFRRNITRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLE 1714 (1833)
Q Consensus 1636 ~v~~~~-~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~ 1714 (1833)
+|+++. ...++..|+||||||||||++.|+++||||||++||++..+++...||+|+|.++.++++|+++.+..|+.|+
T Consensus 428 rv~~~~s~~~~k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~ 507 (612)
T COG5253 428 RVKSRSSISSSKSRKIYFIVMENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLL 507 (612)
T ss_pred EEeccccccccccceeEEEEecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHH
Confidence 999987 4567889999999999999988999999999999999999999999999998888888999999999999999
Q ss_pred HHHHhhHHHHhhcCccccceeEeeeccceeEeee-hhhhhhc-cchhhHHHHHhhhhcccCCC-CCCCCcccChHHHHHH
Q 000223 1715 RAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLG-IIDFMRQ-YTWDKHLETWVKTSGILGGP-KNTSPTVISPQQYKKR 1791 (1833)
Q Consensus 1715 ~~l~~Dt~FL~~~niMDYSLLvGi~~~~~~l~~G-IID~L~~-yt~~KklE~~~K~~~~l~g~-~~~~~Tvv~P~~Y~~R 1791 (1833)
.|||+|+.||+++||||||||||||.++.++.|| |||++|+ |||||++|.|+|..+..|+. +.+.||+|+|.+|++|
T Consensus 508 sqv~~Dv~fLsklniMDYSllVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nr 587 (612)
T COG5253 508 SQVWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNR 587 (612)
T ss_pred HHHHHHHHHHHHhCccceeEEEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHH
Confidence 9999999999999999999999999999999999 9999999 99999999999998766543 4578999999999999
Q ss_pred HHHHHHHhcccCCCccCCCc
Q 000223 1792 FRKAMTTYFLMLPEQWTPPS 1811 (1833)
Q Consensus 1792 F~~~m~~~f~~vp~~W~~~~ 1811 (1833)
|++||+.|+.++|+.|++-+
T Consensus 588 f~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 588 FRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred HHHhHHHhhhcccchhhhcc
Confidence 99999999999999999854
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=1.7e-66 Score=611.74 Aligned_cols=256 Identities=48% Similarity=0.827 Sum_probs=237.3
Q ss_pred cceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccC-CCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHH
Q 000223 1535 GKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQ-GGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYF 1613 (1833)
Q Consensus 1535 ~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~~~-gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf 1613 (1833)
....|+|++|+|.+|++||++||+++++|+.||++|..|..+ ||||||+||+|.|+|||||||++.|++.|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999989875 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CceeeeeeeEEEEeeeccCCCceEEEEEEEeecccCC-CccceeeeCCCCcccccccCC--CCCCccc
Q 000223 1614 KYLSESISTGS-PTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFR-RNITRLYDLKGSSRSRYNADT--SGSNKVL 1689 (1833)
Q Consensus 1614 ~y~~~~~~~~~-~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl 1689 (1833)
+||.++ + +|||+||||+|+|++++ +...++|||||+|||++ ..|+++||||||+++|.+... .+...||
T Consensus 133 ~~~~~n----~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQN----PQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHhC----CCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 999985 5 89999999999999864 33457899999999998 799999999999999998763 3467899
Q ss_pred cchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeeccceeEeeehhhhhhccchhhHHHHHhhhh
Q 000223 1690 LDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLGIIDFMRQYTWDKHLETWVKTS 1769 (1833)
Q Consensus 1690 ~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~niMDYSLLvGi~~~~~~l~~GIID~L~~yt~~KklE~~~K~~ 1769 (1833)
||.||++.. +.+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|+.
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~ 284 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL 284 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh
Confidence 999999976 6799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCcccChHHHHHHHHHHHHHhcc
Q 000223 1770 GILGGPKNTSPTVISPQQYKKRFRKAMTTYFL 1801 (1833)
Q Consensus 1770 ~~l~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1801 (1833)
...+ +..||||+|++|++||++||++||+
T Consensus 285 ~~~~---~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 GHDG---GKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ccCC---CCCcceECHHHHHHHHHHHHHHhcC
Confidence 4322 2679999999999999999999995
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=4.4e-65 Score=607.21 Aligned_cols=263 Identities=41% Similarity=0.693 Sum_probs=238.4
Q ss_pred ceeEEEecCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccc-CccCCCCcceeEEEecCCcEEEeccCHH
Q 000223 1522 LHARISFTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKK-WGAQGGKSNVFFAKTLDDRFIIKQVPKT 1600 (1833)
Q Consensus 1522 ~h~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~-~~~~gGKSgs~F~~T~D~rfiiKti~~~ 1600 (1833)
.|.+++|... ..+|+|++|+|++|++||+++|+++++|++||++|.. |.++||||||+||+|.|+|||||||++.
T Consensus 17 ~~~~~~~~~~----~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~ 92 (342)
T smart00330 17 GHLELTPSHG----SADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKS 92 (342)
T ss_pred CcccccCCCC----CccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHH
Confidence 3455666553 4689999999999999999999999999999999986 9999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEEEeecccC-CCccceeeeCCCCcccccc
Q 000223 1601 ELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLF-RRNITRLYDLKGSSRSRYN 1679 (1833)
Q Consensus 1601 E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~ 1679 (1833)
|++.|+++||.||.||.++ ++|||+||||+|+|.++ +++..++|||||+|||+ +..|+++||||||+++|++
T Consensus 93 E~~~l~~~lp~Y~~~~~~n----~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~ 165 (342)
T smart00330 93 EIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREA 165 (342)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCc
Confidence 9999999999999999874 78999999999999875 34456799999999999 5799999999999999998
Q ss_pred cC-CCCCCccccchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeeccce---------------
Q 000223 1680 AD-TSGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKH--------------- 1743 (1833)
Q Consensus 1680 ~~-~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~niMDYSLLvGi~~~~~--------------- 1743 (1833)
.. ......||||.||++. .+.+|+|+++.|+.|++||++||.||+++||||||||||||..+.
T Consensus 166 ~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~ 244 (342)
T smart00330 166 DKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSD 244 (342)
T ss_pred CccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhccccccccccc
Confidence 65 2346789999999987 578999999999999999999999999999999999999986432
Q ss_pred ---------------------------------------------eEeeehhhhhhccchhhHHHHHhhhhcccCCCCCC
Q 000223 1744 ---------------------------------------------ELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNT 1778 (1833)
Q Consensus 1744 ---------------------------------------------~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~ 1778 (1833)
+|++|||||||+|||+||+|+|+|+.+. + +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~-~---~~ 320 (342)
T smart00330 245 ESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGH-D---GK 320 (342)
T ss_pred ccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhcc-C---CC
Confidence 7999999999999999999999999843 2 36
Q ss_pred CCcccChHHHHHHHHHHHHHhc
Q 000223 1779 SPTVISPQQYKKRFRKAMTTYF 1800 (1833)
Q Consensus 1779 ~~Tvv~P~~Y~~RF~~~m~~~f 1800 (1833)
.||||+|++|++||++||++||
T Consensus 321 ~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 321 TISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred CcceECHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-57 Score=530.85 Aligned_cols=252 Identities=34% Similarity=0.573 Sum_probs=226.1
Q ss_pred ceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCc--cCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHH
Q 000223 1536 KVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWG--AQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYF 1613 (1833)
Q Consensus 1536 ~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~--~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf 1613 (1833)
...|++++|||.+|+.||++|||++.+|+.||++..... +++|||||+||.|.|+|||||||+++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998876554 677999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEEEeecccCCC-ccceeeeCCCCcccccccCCC--CCCcccc
Q 000223 1614 KYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTS--GSNKVLL 1690 (1833)
Q Consensus 1614 ~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~ 1690 (1833)
+|+.++ ++.|||+||||+|+|+.. +|+ ++|||||+|||..+ .|+++||||||+++|.+.+.+ +...+||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999874 455999999999999874 454 58999999999985 999999999999999986632 4678999
Q ss_pred chhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeecc-----------------------------
Q 000223 1691 DQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEE----------------------------- 1741 (1833)
Q Consensus 1691 D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~niMDYSLLvGi~~~----------------------------- 1741 (1833)
|.||++ ....|+|++..++.|+.||++||.||++++|||||||||||..
T Consensus 247 DlDf~~--~~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (420)
T KOG0229|consen 247 DLDFLN--EGQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPE 324 (420)
T ss_pred cchhhc--cCceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccc
Confidence 999998 3568999999999999999999999999999999999999731
Q ss_pred ----------------------------------------ceeEeeehhhhhhccchhhHHHHHhhhhcccCCCCCCCCc
Q 000223 1742 ----------------------------------------KHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPT 1781 (1833)
Q Consensus 1742 ----------------------------------------~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~~~T 1781 (1833)
+..||+||||+||.|++.||+||.+|+. ..++ ..+|
T Consensus 325 ~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~d~--~tIS 400 (420)
T KOG0229|consen 325 DVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QHDP--DTIS 400 (420)
T ss_pred ccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--ccCC--ceee
Confidence 1238999999999999999999999997 4433 6799
Q ss_pred ccChHHHHHHHHHHHHHhcc
Q 000223 1782 VISPQQYKKRFRKAMTTYFL 1801 (1833)
Q Consensus 1782 vv~P~~Y~~RF~~~m~~~f~ 1801 (1833)
+|+|++|++||++||.+.|.
T Consensus 401 ~v~P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 401 AVDPKFYAKRFLDFISNIFF 420 (420)
T ss_pred ccCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999873
No 6
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=1.9e-54 Score=549.59 Aligned_cols=260 Identities=28% Similarity=0.431 Sum_probs=226.6
Q ss_pred eEEEecCCCC---C--cceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccC--ccCCCCcceeEEEecCCcEEEec
Q 000223 1524 ARISFTDDGL---L--GKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKW--GAQGGKSNVFFAKTLDDRFIIKQ 1596 (1833)
Q Consensus 1524 ~~~~f~~~~~---~--~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~--~~~gGKSgs~F~~T~D~rfiiKt 1596 (1833)
+++.|+.++. + ....|+|++|+|.+|+.||++|||++++|+.||+.+..+ .+++|||||+||+|.|+||||||
T Consensus 384 ~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKT 463 (765)
T PLN03185 384 FWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKT 463 (765)
T ss_pred EEEEcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEe
Confidence 4456766552 1 235699999999999999999999999999999865443 57899999999999999999999
Q ss_pred cCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEEEeecccCC-CccceeeeCCCCcc
Q 000223 1597 VPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFR-RNITRLYDLKGSSR 1675 (1833)
Q Consensus 1597 i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~ 1675 (1833)
|++.|++.|+++||+||+||..+ ++|||+||||+|+|++. +|+ +++||||+|||++ ..|+++||||||++
T Consensus 464 I~k~E~~~l~~iLp~Y~~hv~~n----~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGSt~ 534 (765)
T PLN03185 464 LRKSEVKVLLRMLPDYHHHVKTY----ENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGSSL 534 (765)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhC----CCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCCCC
Confidence 99999999999999999999874 78999999999999763 343 5899999999997 59999999999999
Q ss_pred cccccCC-CCCCccccchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeeccc------------
Q 000223 1676 SRYNADT-SGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEK------------ 1742 (1833)
Q Consensus 1676 ~R~~~~~-~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~niMDYSLLvGi~~~~------------ 1742 (1833)
+|.+... ...+.||||.||. .+|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 535 ~R~~~k~~~~~~~tlKDlD~~-----~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~ 609 (765)
T PLN03185 535 GRSADKVEIDENTTLKDLDLN-----YSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSR 609 (765)
T ss_pred CCCCccccccCCCeeeecCcC-----ceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhcccccccc
Confidence 9997542 2356889999993 379999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000223 1743 -------------------------------------------------------------------------------- 1742 (1833)
Q Consensus 1743 -------------------------------------------------------------------------------- 1742 (1833)
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpa 689 (765)
T PLN03185 610 SITADGLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPA 689 (765)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCch
Confidence
Q ss_pred ---------------------eeEeeehhhhhhccchhhHHHHHhhhhcccCCCCCCCCcccChHHHHHHHHHHHHHhcc
Q 000223 1743 ---------------------HELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPTVISPQQYKKRFRKAMTTYFL 1801 (1833)
Q Consensus 1743 ---------------------~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1801 (1833)
-.||+|||||||.|+..|||||.+|++. . +...||+|+|+.|++||++||.+.|+
T Consensus 690 ra~~~~~~~~~~~~~~~e~~d~~~~~giidilq~y~~~k~~eh~~k~~~--~--~~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 690 RAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQ--F--DSLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred hhhcccccccccccccCcccceEEEEEEEEeecccchhHHHHHHHhhhc--c--CCCceeccChHHHHHHHHHHHHhhcC
Confidence 0278999999999999999999999973 2 34689999999999999999999984
No 7
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=4.7e-55 Score=505.27 Aligned_cols=222 Identities=37% Similarity=0.633 Sum_probs=155.7
Q ss_pred hhcc--cccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccC
Q 000223 1566 SLSR--CKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFK 1643 (1833)
Q Consensus 1566 Sl~~--~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~ 1643 (1833)
||+. +..|..++|||||+||+|.|+|||||||+++|++.|+++||+||+||.++ +.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~----~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSEN----PNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHT----TTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhC----cCchHHHHHHHheeccc---
Confidence 6654 36788999999999999999999999999999999999999999999986 56999999999999543
Q ss_pred CCceEEEEEEEeecccCC-CccceeeeCCCCcccccccCC--CCCCccccchhhhhhCCCCCeeeChHHHHHHHHHHHhh
Q 000223 1644 GGKESKMDLLVMENLLFR-RNITRLYDLKGSSRSRYNADT--SGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWND 1720 (1833)
Q Consensus 1644 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~D 1720 (1833)
+| ..++|||||+|+|++ ..|+++||||||+++|.+... .....||||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 467899999999998 799999999999999998652 2357899999999874 69999999999999999999
Q ss_pred HHHHhhcCccccceeEeee------------------------ccceeEeeehhhhhhccchhhHHHHHhhhhcccCCCC
Q 000223 1721 TAFLASIDVMDYSLLVGID------------------------EEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPK 1776 (1833)
Q Consensus 1721 t~FL~~~niMDYSLLvGi~------------------------~~~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~ 1776 (1833)
|.||+++|||||||||||+ ..+..|++|||||||+|||.|++|+++|+.+..+
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~--- 228 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCD--- 228 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT-------------------
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcC---
Confidence 9999999999999999999 4678899999999999999999999999984332
Q ss_pred CCCCcccChHHHHHHHHHHHHHhc
Q 000223 1777 NTSPTVISPQQYKKRFRKAMTTYF 1800 (1833)
Q Consensus 1777 ~~~~Tvv~P~~Y~~RF~~~m~~~f 1800 (1833)
+..+|+|+|++|++||++||++||
T Consensus 229 ~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 229 GQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --SSS---HHHHHHHHHHHHHHH-
T ss_pred CCCCcccCHHHHHHHHHHHHHHhC
Confidence 367999999999999999999998
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.1e-48 Score=490.70 Aligned_cols=308 Identities=28% Similarity=0.434 Sum_probs=286.9
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-C--------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-D-------------- 406 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~-------------- 406 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++... +
T Consensus 81 ~q~~~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~s 157 (525)
T TIGR02344 81 TQDEEVGDGTT---SVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGT 157 (525)
T ss_pred hhhhhccCCcc---hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhcc
Confidence 66889999999 99999999999999999999999999999999999999999887766421 1
Q ss_pred --chhhHHHHHHHHHHHHhhcccCCCC-CCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000223 407 --RESWLEIITSLSWEAATLLKPDMSK-CGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 407 --~~~w~~~l~~L~~eA~~~V~~d~~~-~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl 483 (1833)
...|.+.|+.|+++|+..|+++... ...+|+..||+|++++||++.||++++|++|+|++.|++|+++++||||||+
T Consensus 158 k~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (525)
T TIGR02344 158 KFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLL 237 (525)
T ss_pred ccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEE
Confidence 1379999999999999999876422 3478998889999999999999999999999999999999999999999999
Q ss_pred ccccchhcccc-------ChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHH
Q 000223 484 GGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|++.+.+. ++.++++++++|++|++.++++|++.+|+|||++++|++.|+++|.++||.+++++++.+|+
T Consensus 238 ~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Le 317 (525)
T TIGR02344 238 DCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNN 317 (525)
T ss_pred ecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHH
Confidence 99999998654 35889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEccccccCCCCCCce-eeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHH
Q 000223 557 RIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
|||++|||+++++++++++..||+ |+.|+++++++ +++++|+||..+.+|||+|||+|+.+|+|+|
T Consensus 318 rIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~e 384 (525)
T TIGR02344 318 RIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIE 384 (525)
T ss_pred HHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHH
Confidence 999999999999999999999999 99999999764 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 636 HVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+++||++++++++++++|||||||+|+++
T Consensus 385 r~l~DAl~~vk~~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 385 RNLQDAMAVARNVLLEPKLLPGGGATEMAV 414 (525)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence 999999999999999999999999999753
No 9
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=442.30 Aligned_cols=309 Identities=25% Similarity=0.410 Sum_probs=289.5
Q ss_pred ccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc--------
Q 000223 337 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR-------- 407 (1833)
Q Consensus 337 ~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~-------- 407 (1833)
+.+.. -||+||||||| |+++||+|+|..+..++++++||..+++.|.+||...+..+.+++++.+.+.
T Consensus 78 miel~rtqdeevgdgtt---svi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi 154 (527)
T KOG0364|consen 78 MIELSRTQDEEVGDGTT---SVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVI 154 (527)
T ss_pred HhhhhhcccccccCCce---eeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhh
Confidence 34445 45789999999 9999999999999999999999999999999999999999998777633221
Q ss_pred ---------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCC
Q 000223 408 ---------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKP 478 (1833)
Q Consensus 408 ---------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~np 478 (1833)
..|.+.++.|+.+|+..|+.+ .|..+|+..|+||.|++||.+.+|++++|+.++|.+.|++|.+.|+||
T Consensus 155 ~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~Ienp 232 (527)
T KOG0364|consen 155 NSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENP 232 (527)
T ss_pred hhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcC
Confidence 499999999999999999976 566899999999999999999999999999999999999999999999
Q ss_pred eEEEeccccchhcccc-------ChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecC
Q 000223 479 RFLILGGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 551 (1833)
Q Consensus 479 rILLl~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk 551 (1833)
||.|++|||||.+.++ +-.++..+++-|+||+..++..|+..+|+||+++|+|++.|++||.++||+++++++
T Consensus 233 rivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~r 312 (527)
T KOG0364|consen 233 RIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLR 312 (527)
T ss_pred cEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhh
Confidence 9999999999998765 357789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccccCCCCCCce-eeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHH
Q 000223 552 RPLLERIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDN 630 (1833)
Q Consensus 552 ~~~LerIAr~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~ 630 (1833)
+.+..||||++||.|+.+.++|.+...|+ |+.|++++++++ .|.||..|..|++|||+|||++.+.
T Consensus 313 KtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gde-------------yf~f~~~Ck~pkaCtillrg~skdi 379 (527)
T KOG0364|consen 313 KTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDE-------------YFTFFTDCKEPKACTILLRGPSKDI 379 (527)
T ss_pred ccccchhhhhcCceeccChhhCchhccCcccceeeeeccCch-------------hhhhhhhcCCCcceEEEeccCchhH
Confidence 99999999999999999999999999995 999999999874 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCC
Q 000223 631 LKKAKHVVQYGVFAAYHLALETSFLADEGASLP 663 (1833)
Q Consensus 631 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~ 663 (1833)
|.|++|.++||+.+++|.+.+++++|||||+++
T Consensus 380 l~e~ernlqda~~varn~ii~PklvPGGGAtEM 412 (527)
T KOG0364|consen 380 LNEVERNLQDAMGVARNVIINPKLVPGGGATEM 412 (527)
T ss_pred HHHHHHHhhhHHHHHHHhccCCcccCCccHHHH
Confidence 999999999999999999999999999999997
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.9e-46 Score=474.21 Aligned_cols=307 Identities=24% Similarity=0.350 Sum_probs=284.2
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-Cc-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~~------------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~qd~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~s 157 (519)
T TIGR02339 81 TQDAEVGDGTT---TAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTG 157 (519)
T ss_pred HHHHHhCCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhcc
Confidence 66889999999 99999999999999999999999999999999999999999888776322 11
Q ss_pred ----hhhHHHHHHHHHHHHhhcccCCCCC-CCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEE
Q 000223 408 ----ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 482 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILL 482 (1833)
..|.+.|++|+++|+..|++....+ -.+|+ ++|+|+|++||++.||++++|++|++++.|++|+++++||||||
T Consensus 158 k~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIll 236 (519)
T TIGR02339 158 KASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIAL 236 (519)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEE
Confidence 2577999999999999998532122 25888 89999999999999999999999999999999999999999999
Q ss_pred eccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 483 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 483 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++++|||++.+ +++.++.+++++|++|++++|++|++.|++|||++++|++.|+++|.++||+++.++++.+|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999875 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHH
Q 000223 556 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
+|||++|||+++++++++.+..||+|+.|++++++. +++++|+||..+.+|||+|||+|+.+|+|+|
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~ 383 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELE 383 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999865 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 636 HVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+++||++++++++.+++|||||||+|+.+
T Consensus 384 r~i~DAl~~~~~~~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 384 RSIQDALHVVASALEDGKVVAGGGAVEIEL 413 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEeeCCCHHHHHH
Confidence 999999999999999999999999999753
No 11
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-45 Score=467.77 Aligned_cols=307 Identities=23% Similarity=0.353 Sum_probs=284.6
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCC-CCc-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE-NDR------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~-~~~------------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..++.++.+.. .+.
T Consensus 80 ~q~~~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~s 156 (517)
T cd03343 80 TQDEEVGDGTT---TAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTG 156 (517)
T ss_pred HHHHHhCCChh---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcc
Confidence 56889999999 9999999999999999999999999999999999999999988877643 121
Q ss_pred ---hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEec
Q 000223 408 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILG 484 (1833)
Q Consensus 408 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~ 484 (1833)
..|.+.|++|+++|+..++++......+|+ ++|+|+|++||+++||++++|++|++++.|+.|++.++||||||++
T Consensus 157 k~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~ 235 (517)
T cd03343 157 KGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLD 235 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEe
Confidence 257899999999999999764222236888 8999999999999999999999999999999999999999999999
Q ss_pred cccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHH
Q 000223 485 GALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLER 557 (1833)
Q Consensus 485 ~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Ler 557 (1833)
++|||.+.+ +...++++++++|++|+++++++|++.|++|||++++|++.|+++|.++||++++++++.+|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 999999875 4567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHH
Q 000223 558 IARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHV 637 (1833)
Q Consensus 558 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~ 637 (1833)
||++|||+++++++++++..||+|+.|+++++++ +++++|+||..+.+|||+|||+|+.+|+|+||+
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~ 382 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERA 382 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999999999999998865 579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 638 VQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 638 l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
++||++++++++.+++||||||++|..+
T Consensus 383 l~Dal~~~~~~~~~~~vvpGGG~~e~~l 410 (517)
T cd03343 383 LEDALRVVADALEDGKVVAGGGAVEIEL 410 (517)
T ss_pred HHHHHHHHHHHHhCCCeeeCCCHHHHHH
Confidence 9999999999999999999999999753
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-45 Score=466.05 Aligned_cols=307 Identities=18% Similarity=0.261 Sum_probs=283.0
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC---Cc-----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---DR----------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~---~~----------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +.
T Consensus 88 ~q~~~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl 164 (526)
T cd03339 88 SQDDEIGDGTT---GVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSL 164 (526)
T ss_pred hhhhhhcCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhh
Confidence 66889999999 99999999999999999999999999999999999999999888776431 21
Q ss_pred -----hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEE
Q 000223 408 -----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 482 (1833)
Q Consensus 408 -----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILL 482 (1833)
..|.+.|+.|+++|+..+... ++..+|+ +.|+|+|++||++.||++++|++|++++.|+.|++.++||||+|
T Consensus 165 ~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~l 241 (526)
T cd03339 165 GSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAI 241 (526)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEE
Confidence 367899999999999998642 2335677 78999999999999999999999999999999999999999999
Q ss_pred eccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 483 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 483 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++++||+.+.. +.+.+++.++++|++|++.++++|++.|++|||++++|++.|+++|.++||++++++++.+|
T Consensus 242 l~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~L 321 (526)
T cd03339 242 LTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321 (526)
T ss_pred EEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999998764 34678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHH
Q 000223 556 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
+|||++|||++++++++++...||+|+.|+++.|+.+ .++++||+||+.+.+|||+|||+|+.+|+|+|
T Consensus 322 erIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~e 390 (526)
T cd03339 322 ELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAK 390 (526)
T ss_pred HHHHHHhCCEEecchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999987641 26899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 636 HVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+++||++++++++.++++||||||+|+.+
T Consensus 391 r~l~DAl~~~~~~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 391 RSLHDALCVVRNLIRDNRIVYGGGAAEISC 420 (526)
T ss_pred HHHHHHHHHHHHHhhCCCEEeCCCHHHHHH
Confidence 999999999999999999999999999753
No 13
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-44 Score=457.56 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=278.7
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhC-CCCCCC-CCc------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDE-NDR------------ 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~-is~~~~-~~~------------ 407 (1833)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++ ++++.. .+.
T Consensus 73 ~q~~~~GDGTT---t~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~ 149 (527)
T cd03335 73 LQDKEVGDGTT---SVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMS 149 (527)
T ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Confidence 66889999999 9999999999999999999999999999999999999999985 666532 121
Q ss_pred ----hhhHHHHHHHHHHHHhhccc-CCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEE
Q 000223 408 ----ESWLEIITSLSWEAATLLKP-DMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 482 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~-d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILL 482 (1833)
..+.+.|+.|+++|+..|+. +......+|+ ++|+|++++||++.||++++|++|+++++|++|+++++||||||
T Consensus 150 sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIll 228 (527)
T cd03335 150 SKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIAC 228 (527)
T ss_pred ccccchhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEE
Confidence 14679999999999999964 2112224788 78999999999999999999999999999999999999999999
Q ss_pred eccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 483 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 483 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++++|++.+.+ ++..+++.+.++|+++++.++++|++.|++|||++++|++.|++||.++||++++++++.+|
T Consensus 229 l~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~l 308 (527)
T cd03335 229 LDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDL 308 (527)
T ss_pred EeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHH
Confidence 99999998754 35688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccCC------CCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHH
Q 000223 556 ERIARCTGAQIVPSIDHLT------SQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGD 629 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~ 629 (1833)
+|||++|||+++++++.++ +..||+|+.|+++++++ ++|++|+||..+.+|||+|||+|+.
T Consensus 309 erIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~ 375 (527)
T cd03335 309 RRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDF 375 (527)
T ss_pred HHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHH
Confidence 9999999999999986653 44899999999999865 5899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 630 NLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 630 ~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+|+|+||+++||++++++++.++++||||||+|..+
T Consensus 376 ~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~l 411 (527)
T cd03335 376 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 411 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 999999999999999999999999999999999753
No 14
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.1e-44 Score=454.46 Aligned_cols=300 Identities=20% Similarity=0.295 Sum_probs=278.5
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCC----c----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND----R---------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~----~---------- 407 (1833)
.+|+++||||| |+|+||++|++++.+++++|+||..|++||.+|+..++..+++++++...+ .
T Consensus 92 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~ 168 (533)
T PTZ00212 92 TQDEEVGDGTT---SVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTT 168 (533)
T ss_pred hhhhhhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHH
Confidence 66889999999 999999999999999999999999999999999999999999888764321 1
Q ss_pred ------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEE
Q 000223 408 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 481 (1833)
Q Consensus 408 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprIL 481 (1833)
..|.+.|+.|+++|+..+.. .+|+ +.|+|++++||++.||++++|+|+++++.+ .|+++++|||||
T Consensus 169 l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIl 240 (533)
T PTZ00212 169 LSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKIL 240 (533)
T ss_pred hcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEE
Confidence 25889999999999999864 3566 789999999999999999999999999887 589999999999
Q ss_pred Eeccccchhccc--------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChH
Q 000223 482 ILGGALEYQRVA--------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 553 (1833)
Q Consensus 482 Ll~~~Ley~r~~--------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~ 553 (1833)
|++++|||++.+ +++.++..+.++|++++++++.+|++.++++|+++++|++.|+++|.++||++++++++.
T Consensus 241 l~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~ 320 (533)
T PTZ00212 241 VANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFD 320 (533)
T ss_pred EEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHH
Confidence 999999999875 457778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHH
Q 000223 554 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKK 633 (1833)
Q Consensus 554 ~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~e 633 (1833)
+|+|||++|||+++++++.+++.+||+|+.|++..+++ +++++|+||..+.+|||+|||+|+.+|+|
T Consensus 321 ~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 387 (533)
T PTZ00212 321 GMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGASTHILDE 387 (533)
T ss_pred HHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCChhHHHH
Confidence 99999999999999999999999999999999887654 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 634 AKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 634 vKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+||+++||++++++++++++|||||||+|..+
T Consensus 388 ~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 388 AERSLHDALCVLSQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred HHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 99999999999999999999999999999753
No 15
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.3e-44 Score=453.27 Aligned_cols=307 Identities=17% Similarity=0.259 Sum_probs=282.4
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC---Cc-----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---DR----------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~---~~----------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||..|+...+..+++++++... +.
T Consensus 92 ~qd~~~GDGTt---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l 168 (532)
T TIGR02343 92 SQDDEIGDGTT---GVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSL 168 (532)
T ss_pred HHHHHhcCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhh
Confidence 56889999999 99999999999999999999999999999999999999999888775321 11
Q ss_pred -----hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEE
Q 000223 408 -----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 482 (1833)
Q Consensus 408 -----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILL 482 (1833)
..|.+.|+.|+++|+..|... ....+|+ ++|+|+|++||++.||++++|++|++++.|+.|++.++||||+|
T Consensus 169 ~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l 245 (532)
T TIGR02343 169 GSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAI 245 (532)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEE
Confidence 257889999999999998642 2336888 89999999999999999999999999999999999999999999
Q ss_pred eccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 483 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 483 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++++||+.+.+ +.+.+++.++++|+++++.++++|++.|++|||++++|++.|+++|.++||.+++++++.+|
T Consensus 246 ~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l 325 (532)
T TIGR02343 246 LTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHEL 325 (532)
T ss_pred EEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHH
Confidence 99999999864 24567788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHH
Q 000223 556 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
+|||++|||+++++++++++..||+|+.|+++.++.. .+++++|+||+.+..|||+|||+|+.+|+|+|
T Consensus 326 ~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~e 394 (532)
T TIGR02343 326 ELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAK 394 (532)
T ss_pred HHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999998652 14799999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 636 HVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+++||+++++++++++++||||||+|+++
T Consensus 395 r~l~DAl~~v~~~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 395 RSIHDALCVVRNLIKNSRIVYGGGAAEISC 424 (532)
T ss_pred HHHHHHHHHHHHHHhCCCEEeCcCHHHHHH
Confidence 999999999999999999999999999854
No 16
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-44 Score=452.92 Aligned_cols=301 Identities=22% Similarity=0.332 Sum_probs=278.2
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCC-----c---------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND-----R--------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~-----~--------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++...+ .
T Consensus 81 ~q~~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t 157 (522)
T cd03340 81 SQDAEVGDGTT---SVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAAT 157 (522)
T ss_pred HhHhHhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHH
Confidence 66889999999 999999999999999999999999999999999999999999887763221 1
Q ss_pred -------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC---CceeecC
Q 000223 408 -------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR---MTSKIDK 477 (1833)
Q Consensus 408 -------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~---M~~~i~n 477 (1833)
..+.+.|++|+++|+..+++ .+|+ ++|+|++++||++.||++++|++|+++++++. |+++++|
T Consensus 158 ~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n 230 (522)
T cd03340 158 ALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKN 230 (522)
T ss_pred HhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccC
Confidence 24789999999999999975 3566 78999999999999999999999999999764 6999999
Q ss_pred CeEEEeccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeec
Q 000223 478 PRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI 550 (1833)
Q Consensus 478 prILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nV 550 (1833)
||||+++++||+.+.. +.+..++.++++|+++|.+++++|++.|++||+++++|++.|++||.++||.++.+|
T Consensus 231 ~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v 310 (522)
T cd03340 231 PKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRV 310 (522)
T ss_pred CeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeC
Confidence 9999999999998753 456668899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHH
Q 000223 551 KRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDN 630 (1833)
Q Consensus 551 k~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~ 630 (1833)
++.+|+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||++...
T Consensus 311 ~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~ 377 (522)
T cd03340 311 PEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQF 377 (522)
T ss_pred CHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHH
Confidence 99999999999999999999999999999999999888754 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 631 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 631 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+|+||+++||++++++++.+++||||||++|.++
T Consensus 378 l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 378 IEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 99999999999999999999999999999999753
No 17
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.1e-43 Score=413.21 Aligned_cols=259 Identities=59% Similarity=0.902 Sum_probs=240.9
Q ss_pred HHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecc
Q 000223 388 ALVAQLLQVENLPVGDENDRESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVA 467 (1833)
Q Consensus 388 al~~qLl~l~~is~~~~~~~~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a 467 (1833)
++..||+..+++. +.+.|.+.|+.|+++|+..|.++...++.+|+.++|+|+|++||++.||++++|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 6788999999986 46799999999999999999765334457999778999999999999999999999999999
Q ss_pred cCCCceeecCCeEEEeccccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEE
Q 000223 468 HRRMTSKIDKPRFLILGGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLV 547 (1833)
Q Consensus 468 ~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv 547 (1833)
|++||++++||||+|++|+|+|++.++++.+++.++++|++|+++++++|++.||||||++|+|++.|++||.++||+++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v 156 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecChHHHHHHHHHhCCEEccccc-cCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCC
Q 000223 548 LNIKRPLLERIARCTGAQIVPSID-HLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGA 626 (1833)
Q Consensus 548 ~nVk~~~LerIAr~TGA~Iissld-~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~ 626 (1833)
++|++.+|+|||+||||+|+++++ .++++.||+|+.|++++++++. + ..++++||+||+.+.+|||+|||+
T Consensus 157 ~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~------~--~~~~~~~~~~~~~~~~~TIlLRG~ 228 (261)
T cd03334 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH------G--RSKTLMFFEGCPKELGCTILLRGG 228 (261)
T ss_pred EecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC------C--CceeEEEEecCCCCceeEEEEECC
Confidence 999999999999999999999954 8899999999999999987531 1 136899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCC
Q 000223 627 NGDNLKKAKHVVQYGVFAAYHLALETSFLADEG 659 (1833)
Q Consensus 627 s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgG 659 (1833)
|...|+|+||+++||++++||+++|.+++.+.|
T Consensus 229 t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 229 DLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999988754
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-43 Score=449.03 Aligned_cols=304 Identities=21% Similarity=0.288 Sum_probs=279.9
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCC--CCCc------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGD--ENDR------------ 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~--~~~~------------ 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++. ..+.
T Consensus 81 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~ 157 (531)
T TIGR02347 81 AQDDITGDGTT---STVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLR 157 (531)
T ss_pred HhhhhhcCcHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhc
Confidence 67889999999 999999999999999999999999999999999999999998887542 2221
Q ss_pred ----hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000223 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl 483 (1833)
..+.+.|++|+++|+..++++ +..+|+ +.|+|+++.||+..||++++|++|++++.++.|+++++||||||+
T Consensus 158 sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~ 233 (531)
T TIGR02347 158 TKLPIDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTC 233 (531)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEE
Confidence 267899999999999999863 235787 779999999999999999999999999999999999999999999
Q ss_pred ccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccC-------Cc---EEEEcCCcCHHHHHHHHHcCCeE
Q 000223 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHH-------PN---VLLVEKSVSRYAQDYLLAKDISL 546 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~-------pn---VVlvek~Vs~~Al~~L~~~gI~v 546 (1833)
+++|++.+.+ ....++..++++|++||+.++++|+.++ |+ ||+++++|++.|++||.++||++
T Consensus 234 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~ 313 (531)
T TIGR02347 234 NVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMA 313 (531)
T ss_pred eCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceE
Confidence 9999998743 3567889999999999999999999876 36 99999999999999999999999
Q ss_pred EeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCC
Q 000223 547 VLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGA 626 (1833)
Q Consensus 547 v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~ 626 (1833)
++++++.+|+|||++|||+++.+++.+++..||+|+.|+++.+++ +++++|+||..+..|||+|||+
T Consensus 314 i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~ 380 (531)
T TIGR02347 314 LRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGP 380 (531)
T ss_pred EccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCC
Confidence 999999999999999999999999999999999999999988765 5799999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 627 NGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 627 s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+.+|+|+||+++||++++++++.++++||||||+|.++
T Consensus 381 t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 381 NDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999754
No 19
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-43 Score=447.99 Aligned_cols=300 Identities=19% Similarity=0.233 Sum_probs=278.2
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC---C-c----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---D-R---------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~---~-~---------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++... + .
T Consensus 80 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~ 156 (517)
T cd03336 80 VQDDEVGDGTT---SVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTT 156 (517)
T ss_pred HHHhHhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhh
Confidence 66889999999 99999999999999999999999999999999999999999888876421 1 1
Q ss_pred ------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEE
Q 000223 408 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 481 (1833)
Q Consensus 408 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprIL 481 (1833)
..|.+.|+.|+++|+..++. .+|+ ++|+|++++||++.||++++|+|+++++.+ .|+++++|||||
T Consensus 157 lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIl 228 (517)
T cd03336 157 LSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKIL 228 (517)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEE
Confidence 14889999999999999853 4666 789999999999999999999999999876 489999999999
Q ss_pred Eeccccchhcccc--------ChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChH
Q 000223 482 ILGGALEYQRVAN--------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 553 (1833)
Q Consensus 482 Ll~~~Ley~r~~~--------~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~ 553 (1833)
|++++|||++.+. .+.++..+.++|++++++++.+|++.++++|+++++|++.|++||.++||.+++++++.
T Consensus 229 i~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~ 308 (517)
T cd03336 229 IANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFD 308 (517)
T ss_pred EEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHH
Confidence 9999999988753 67888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHH
Q 000223 554 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKK 633 (1833)
Q Consensus 554 ~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~e 633 (1833)
+|+|||++|||+++++++.+++.+||+|+.|++..+++ ++|++|+||+.+.+|||+|||+|+.+|+|
T Consensus 309 ~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 375 (517)
T cd03336 309 GVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDE 375 (517)
T ss_pred HHHHHHHHhCCEEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999887654 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 634 AKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 634 vKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+||+++||++++++++.+++|||||||+|.++
T Consensus 376 ~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 376 AERSLHDALCVLAQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999754
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-43 Score=449.14 Aligned_cols=306 Identities=20% Similarity=0.262 Sum_probs=281.7
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCC-CCc-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE-NDR------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~-~~~------------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 73 ~q~~~~GDGTt---t~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~s 149 (515)
T cd03338 73 AQDIEAGDGTT---SVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNS 149 (515)
T ss_pred HHHhHhcCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhcc
Confidence 56889999999 9999999999999999999999999999999999999999998877643 121
Q ss_pred ---hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC-CceeecCCeEEEe
Q 000223 408 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-MTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~-M~~~i~nprILLl 483 (1833)
..|.+.|+.|+++|+..|+++. ..+.+|+ +.|+|.++.||+++||++++|++|++++.|+. ||+.++||||+++
T Consensus 150 K~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll 227 (515)
T cd03338 150 KVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLI 227 (515)
T ss_pred ccchhhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEE
Confidence 2488999999999999998642 2247898 78999999999999999999999999999986 4999999999999
Q ss_pred ccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCc-----CHHHHHHHHHcCCeEEeecC
Q 000223 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDISLVLNIK 551 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~vv~nVk 551 (1833)
+|+|++.+.+ +.+.+++.++++|+++++.++++|++.|++|||++++| ++.|+++|.++||.++++++
T Consensus 228 ~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~ 307 (515)
T cd03338 228 QFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIE 307 (515)
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCC
Confidence 9999998753 34668999999999999999999999999999999997 99999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCC-CCceEEEecCCCHHH
Q 000223 552 RPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLKGANGDN 630 (1833)
Q Consensus 552 ~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~-~~g~TIlLRG~s~~~ 630 (1833)
+.+|+|||++|||++++++++++...||+|+.|+++++++ +++++|+||+. +.+|||+|||+|+.+
T Consensus 308 ~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~ 374 (515)
T cd03338 308 REEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLV 374 (515)
T ss_pred HHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999999999999754 47999999987 689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 631 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 631 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
++|+||+++||++++++++.++++||||||+|.++
T Consensus 375 l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 375 LDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHH
Confidence 99999999999999999999999999999999754
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.6e-43 Score=446.24 Aligned_cols=311 Identities=19% Similarity=0.246 Sum_probs=282.9
Q ss_pred ccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-Cc-------
Q 000223 337 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------- 407 (1833)
Q Consensus 337 ~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~~------- 407 (1833)
+.+.. .+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++... +.
T Consensus 68 l~~~a~~qd~~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va 144 (517)
T TIGR02342 68 LVELSKAQDIEAGDGTT---SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSA 144 (517)
T ss_pred HHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHH
Confidence 33334 56889999999 99999999999999999999999999999999999999999888776421 11
Q ss_pred ---------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeeccc-CCCceeecC
Q 000223 408 ---------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAH-RRMTSKIDK 477 (1833)
Q Consensus 408 ---------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~-k~M~~~i~n 477 (1833)
..|.+.|+.|+++|+..+.++. .++.+|+ +.|+|+++.||++.||++++|++|++++.+ ++||+.++|
T Consensus 145 ~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n 222 (517)
T TIGR02342 145 TTSLSSKVVSQYSSLLAPLAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEK 222 (517)
T ss_pred HHHhccccchhHHHHHHHHHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccC
Confidence 3788999999999999998532 2347888 889999999999999999999999999999 599999999
Q ss_pred CeEEEeccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCc-----CHHHHHHHHHcCCe
Q 000223 478 PRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDIS 545 (1833)
Q Consensus 478 prILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~ 545 (1833)
|||++++|+|++.+.+ ..+.+++.++++|+++++.++++|++.|++|||++++| ++.|+++|.++||.
T Consensus 223 ~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~ 302 (517)
T TIGR02342 223 AKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIM 302 (517)
T ss_pred CcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCce
Confidence 9999999999998653 35678899999999999999999999999999999998 99999999999999
Q ss_pred EEeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCC-CceEEEec
Q 000223 546 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP-LGCTILLK 624 (1833)
Q Consensus 546 vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~-~g~TIlLR 624 (1833)
+++++++.+|+|||++|||+++++++.++..+||+|+.|++.++++ +++++|++|+.+ ..|||+||
T Consensus 303 av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllr 369 (517)
T TIGR02342 303 VVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLR 369 (517)
T ss_pred EEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999777543 479999999874 89999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 625 GANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 625 G~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
|+|+.+++|+||+++||++++++++.++++||||||+|+++
T Consensus 370 G~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 370 GSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHH
Confidence 99999999999999999999999999999999999999753
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-42 Score=442.82 Aligned_cols=307 Identities=20% Similarity=0.232 Sum_probs=277.6
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhC-CCCCCC--CCc-----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDE--NDR----------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~-is~~~~--~~~----------- 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++ ++++.. +..
T Consensus 77 ~qd~~~GDGTT---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~ 153 (536)
T TIGR02340 77 LQDREVGDGTT---SVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMS 153 (536)
T ss_pred HHHHHhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhc
Confidence 66889999999 9999999999999999999999999999999999999999986 355532 111
Q ss_pred ----hhhHHHHHHHHHHHHhhcccCCCCC-CCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEE
Q 000223 408 ----ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 482 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILL 482 (1833)
..+.+.|++|+++|+..++.+...+ ..+|+ ++|+|+|+.||+..||++++|++|++++.+++|+++++||||||
T Consensus 154 sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli 232 (536)
T TIGR02340 154 SKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIAC 232 (536)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEE
Confidence 1478999999999999996321122 25788 88999999999999999999999999999999999999999999
Q ss_pred eccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 483 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 483 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++++|++.+.+ ++...++.+.++|++++.+.+++|++.+++||+++++|++.|++||.++||.+++++++.+|
T Consensus 233 ~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~L 312 (536)
T TIGR02340 233 LDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDL 312 (536)
T ss_pred EecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999998754 34688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccC------CCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHH
Q 000223 556 ERIARCTGAQIVPSIDHL------TSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGD 629 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~ 629 (1833)
+|||++|||+++++++.+ +...||+|+.|++++++. +++++|+||..+.+|||+|||+|+.
T Consensus 313 erIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~ 379 (536)
T TIGR02340 313 KRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDF 379 (536)
T ss_pred HHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHH
Confidence 999999999999998654 345699999999999865 5799999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 630 NLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 630 ~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+++|+||+++||++++++++++++|||||||+|+.+
T Consensus 380 ~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHH
Confidence 999999999999999999999999999999999753
No 23
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-43 Score=444.10 Aligned_cols=302 Identities=20% Similarity=0.299 Sum_probs=278.8
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC----C-c---------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN----D-R--------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~----~-~--------- 407 (1833)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+...+..+++++++... + .
T Consensus 82 ~q~~~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~ts 158 (522)
T TIGR02345 82 SQDSEVGDGTT---SVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATA 158 (522)
T ss_pred HHHHHhCCCch---hHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHH
Confidence 56889999999 99999999999999999999999999999999999999999888776431 1 1
Q ss_pred ------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC---CceeecCC
Q 000223 408 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR---MTSKIDKP 478 (1833)
Q Consensus 408 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~---M~~~i~np 478 (1833)
..+.+.|++|+++|+..++++ .+|+ ++|+|+++.||++.||++++|++|+++++++. |+++++||
T Consensus 159 l~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~ 232 (522)
T TIGR02345 159 LNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANP 232 (522)
T ss_pred hccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccc
Confidence 147889999999999999753 5777 78999999999999999999999999999764 69999999
Q ss_pred eEEEeccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecC
Q 000223 479 RFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 551 (1833)
Q Consensus 479 rILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk 551 (1833)
||||++++|++.+.+ +.+..++.+++.|++++++++++|++.|++||+|+++|++.+++||.++||+++.+++
T Consensus 233 kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~ 312 (522)
T TIGR02345 233 KILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVS 312 (522)
T ss_pred eEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCC
Confidence 999999999998654 3577888899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHH
Q 000223 552 RPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNL 631 (1833)
Q Consensus 552 ~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L 631 (1833)
..+|+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|
T Consensus 313 ~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l 379 (522)
T TIGR02345 313 DEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFI 379 (522)
T ss_pred HHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHH
Confidence 9999999999999999999999999999999999887654 689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 632 KKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 632 ~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+|+||+++||++++++++.++.|||||||+|..+
T Consensus 380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~l 413 (522)
T TIGR02345 380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEMEL 413 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHH
Confidence 9999999999999999999999999999999753
No 24
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.3e-43 Score=439.76 Aligned_cols=274 Identities=27% Similarity=0.431 Sum_probs=253.4
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-Cc-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~~------------- 407 (1833)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~q~~~~GDGTt---t~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~s 157 (480)
T cd03337 81 TQDEEVGDGTT---SVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGT 157 (480)
T ss_pred hHHHHhCCCcc---hhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhcc
Confidence 56889999999 99999999999999999999999999999999999999999988776431 21
Q ss_pred ---hhhHHHHHHHHHHHHhhcccCCCCC-CCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000223 408 ---ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ---~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl 483 (1833)
+.|.+.|+.|+++|+..++++.... ..+|++.||+|++++||++.||++++|++|+|+++|++|+++++||||||+
T Consensus 158 K~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (480)
T cd03337 158 KFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLL 237 (480)
T ss_pred CcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEE
Confidence 3699999999999999998764322 368998899999999999999999999999999999999999999999999
Q ss_pred ccccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhC
Q 000223 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTG 563 (1833)
Q Consensus 484 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TG 563 (1833)
+|+||| |||++++|++.|+++|.++||.+++++++.+|+|||++||
T Consensus 238 ~~~Le~----------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tG 283 (480)
T cd03337 238 DCPLEY----------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACG 283 (480)
T ss_pred ecCcce----------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 999999 9999999999999999999999999999999999999999
Q ss_pred CEEccccccCCCCCCce-eeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHH
Q 000223 564 AQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGV 642 (1833)
Q Consensus 564 A~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal 642 (1833)
|+++++++++++..||+ |+.|+++++++ +++++|+||..+.+|||+|||+|..+|+|+||+++||+
T Consensus 284 a~ii~~~~~l~~~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl 350 (480)
T cd03337 284 ATIVNRPEELTESDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAM 350 (480)
T ss_pred CEEecchhhCCHHHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 66777776543 58999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEeCCCccCCCC
Q 000223 643 FAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 643 ~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+++++++.+++|||||||+|+.+
T Consensus 351 ~v~~~~~~~~~~vpGGGa~E~~l 373 (480)
T cd03337 351 AVARNIILNPKLVPGGGATEMAV 373 (480)
T ss_pred HHHHHHhcCCCEEeCCCHHHHHH
Confidence 99999999999999999999753
No 25
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-41 Score=428.18 Aligned_cols=300 Identities=19% Similarity=0.247 Sum_probs=275.1
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC----Cc----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN----DR---------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~----~~---------- 407 (1833)
-||+++||||| |+|+||++|++++.++++.|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~ 157 (519)
T TIGR02341 81 VQDDEVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTT 157 (519)
T ss_pred HhHhhhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHH
Confidence 66889999999 99999999999999999999999999999999999999999888876422 11
Q ss_pred ------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEE
Q 000223 408 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 481 (1833)
Q Consensus 408 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprIL 481 (1833)
..|.+.|+.|+++|+..+.. ..|+ +.|+|.+++||++.||++++|+|+++.+.+ .|+++++|||||
T Consensus 158 l~ski~~~~~~~~s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Il 229 (519)
T TIGR02341 158 LSSKILSQHKDHFAQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKIL 229 (519)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEE
Confidence 25788999999999999853 1255 569999999999999999999999999876 689999999999
Q ss_pred Eeccccchhcccc--------ChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChH
Q 000223 482 ILGGALEYQRVAN--------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 553 (1833)
Q Consensus 482 Ll~~~Ley~r~~~--------~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~ 553 (1833)
+++++|++.+.+. ....+..+.+.|+++++.+++.|++.++++|++++.|++.|+++|.++||.+++++++.
T Consensus 230 i~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~ 309 (519)
T TIGR02341 230 IANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFE 309 (519)
T ss_pred EEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHH
Confidence 9999999987553 35568888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHH
Q 000223 554 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKK 633 (1833)
Q Consensus 554 ~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~e 633 (1833)
+|+|||++|||+++++++.+++.+||+|+.|++..+++ ++|++|+||+.+..|||+|||+|+.+|+|
T Consensus 310 ~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E 376 (519)
T TIGR02341 310 GIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDE 376 (519)
T ss_pred HHHHHHHHhCCEEecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999877654 58999999999899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 634 AKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 634 vKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+||.++||++++++++.+++|||||||+|.++
T Consensus 377 ~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 377 SERSLHDALCVLSQTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999754
No 26
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-41 Score=422.25 Aligned_cols=282 Identities=22% Similarity=0.302 Sum_probs=257.6
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCC--CCc------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE--NDR------------ 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~--~~~------------ 407 (1833)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 77 ~qd~~~GDGTT---t~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~ 153 (484)
T cd03342 77 AQDDITGDGTT---SNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLR 153 (484)
T ss_pred HhhhHhCCChh---hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhC
Confidence 66889999999 9999999999999999999999999999999999999999988877643 121
Q ss_pred ----hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000223 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl 483 (1833)
..|.+.|++|+++|+..++++ ++.+|+ +.|+|+++.||+..||++++|++|++++.++.|+++++||||+|+
T Consensus 154 sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~ 229 (484)
T cd03342 154 TKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTC 229 (484)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEE
Confidence 257899999999999999864 347888 889999999999999999999999999999999999999999999
Q ss_pred ccccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhC
Q 000223 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTG 563 (1833)
Q Consensus 484 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TG 563 (1833)
+++|++.+.+... .+ ..+|||++++|++.|+++|.++||.+++++++.+|+|||++||
T Consensus 230 ~~~le~~~~~~~~-~~---------------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 230 NVSLEYEKTEVNS-GF---------------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred eCCCCCCccccCc-EE---------------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 9999998764321 10 0239999999999999999999999999999999999999999
Q ss_pred CEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHH
Q 000223 564 AQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVF 643 (1833)
Q Consensus 564 A~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~ 643 (1833)
|+++++++++++..||+|+.|+++.++. ++|++|+||+.+..|||+|||+|+.+|+|+||+++||++
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~ 354 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLR 354 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 579999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEeCCCccCCCC
Q 000223 644 AAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 644 a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
++++++.++++||||||+|.++
T Consensus 355 ~vk~~~~~~~~vpGGGa~e~~l 376 (484)
T cd03342 355 AVKNAIEDKCVVPGAGAFEVAL 376 (484)
T ss_pred HHHHHhcCCcEEeCCCHHHHHH
Confidence 9999999999999999999754
No 27
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=381.37 Aligned_cols=308 Identities=19% Similarity=0.308 Sum_probs=281.3
Q ss_pred cccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-Cc------
Q 000223 336 ILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------ 407 (1833)
Q Consensus 336 ~~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~~------ 407 (1833)
.|++.. -||.||||||| |+|+||+|+|+++..+++.|+||..|+.+|++|...++..++++++.... +.
T Consensus 78 tlVdia~sQDaEVGDGTT---SVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~l 154 (543)
T KOG0361|consen 78 TLVDIARSQDAEVGDGTT---SVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELREL 154 (543)
T ss_pred HHHHHHhhccccccCCce---eEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHH
Confidence 566766 45779999999 99999999999999999999999999999999999999999999887432 11
Q ss_pred --------------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccC---C
Q 000223 408 --------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHR---R 470 (1833)
Q Consensus 408 --------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k---~ 470 (1833)
....++|++++++|+..+.. ..|. +.|-|||++||.+.||.+|+||.|.|.+... .
T Consensus 155 L~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq 227 (543)
T KOG0361|consen 155 LEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ 227 (543)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhh
Confidence 26678899999999998862 3444 8899999999999999999999999998875 5
Q ss_pred CceeecCCeEEEeccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcC
Q 000223 471 MTSKIDKPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 543 (1833)
Q Consensus 471 M~~~i~nprILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~g 543 (1833)
.|+++.|||||+|+-.||..-.. ....+.+.++..|+..|...+++|+..|.||||..-.|.++|.+||.+++
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd 307 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD 307 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC
Confidence 79999999999999999985321 35788999999999999999999999999999999999999999999999
Q ss_pred CeEEeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEe
Q 000223 544 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILL 623 (1833)
Q Consensus 544 I~vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlL 623 (1833)
|-+..+|..++|.|+..++|+.|.++..++.+..||+|+.|+.+.++. .+|-+|+||++.+.||++|
T Consensus 308 iFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 308 IFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred ceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEE
Confidence 999999999999999999999999999999999999999999888664 4799999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCCC
Q 000223 624 KGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLP 666 (1833)
Q Consensus 624 RG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~~ 666 (1833)
||+-++.+.|++|.+|||+++++.++++.++|+||||+++++.
T Consensus 375 RGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElS 417 (543)
T KOG0361|consen 375 RGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELS 417 (543)
T ss_pred eccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHH
Confidence 9999999999999999999999999999999999999999753
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.2e-40 Score=416.20 Aligned_cols=308 Identities=17% Similarity=0.230 Sum_probs=276.3
Q ss_pred ccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCC-CC--CCCch----
Q 000223 337 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPV-GD--ENDRE---- 408 (1833)
Q Consensus 337 ~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~-~~--~~~~~---- 408 (1833)
+.+.. .+|+++||||| |+|+||++|++++.+++++|+||..|++||.+|+..++..++++++ +. ..+..
T Consensus 77 l~e~a~sqd~~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 153 (531)
T TIGR02346 77 LVMASEMQENEIGDGTN---LVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIK 153 (531)
T ss_pred HHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 34444 56889999999 9999999999999999999999999999999999999999988775 32 11210
Q ss_pred -----------hhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecC
Q 000223 409 -----------SWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDK 477 (1833)
Q Consensus 409 -----------~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~n 477 (1833)
+..+.|++|+++|+..++++ ..+.+|+ +.|+|+++.||+.+||++++|++|+++.. .|++.++|
T Consensus 154 i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~--~~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n 228 (531)
T TIGR02346 154 ALKASISSKQYGNEDFLAQLVAKACSTVMPK--NPENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKN 228 (531)
T ss_pred HHHHHhccccCchHHHHHHHHHHHHHHHhhc--CCCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccC
Confidence 23788999999999999864 2236888 78999999999999999999999999954 58999999
Q ss_pred CeEEEeccccchhccc-------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeec
Q 000223 478 PRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI 550 (1833)
Q Consensus 478 prILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nV 550 (1833)
|||+|+++||++.+.+ +....+..+.+.|.++++.++++|++.|++|||++++|++.|+++|.++||.+++++
T Consensus 229 ~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~ 308 (531)
T TIGR02346 229 AKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIP 308 (531)
T ss_pred CCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecC
Confidence 9999999999998765 245667788899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCC-CCCceEEEecCCCHH
Q 000223 551 KRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCP-KPLGCTILLKGANGD 629 (1833)
Q Consensus 551 k~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~-~~~g~TIlLRG~s~~ 629 (1833)
+..+|+|||++|||++++++++++..+||+|+.|++++++. +.+.+|++|. .+..|||+|||+|+.
T Consensus 309 ~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~~ 375 (531)
T TIGR02346 309 SKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTKN 375 (531)
T ss_pred CHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCHH
Confidence 99999999999999999999999999999999999998643 4689999998 478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 630 NLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 630 ~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+++|+||.++||++++++++.+++|||||||+|+.+
T Consensus 376 ~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 376 LLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 999999999999999999999999999999999753
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.1e-39 Score=408.17 Aligned_cols=270 Identities=24% Similarity=0.319 Sum_probs=252.1
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCC-CCCc-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGD-ENDR------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~-~~~~------------- 407 (1833)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++. ..+.
T Consensus 73 ~~~~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~s 149 (464)
T cd00309 73 SQDDEVGDGTT---TVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNS 149 (464)
T ss_pred HHHhHhCCchh---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccc
Confidence 56889999999 999999999999999999999999999999999999999999888762 1121
Q ss_pred ---hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEec
Q 000223 408 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILG 484 (1833)
Q Consensus 408 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~ 484 (1833)
..|.+.|++|+++|+..++++.. .+|. ++|+|++++||++.||++++|++|+|++.++.|+..++||||+|++
T Consensus 150 K~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~ 225 (464)
T cd00309 150 KLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLD 225 (464)
T ss_pred cccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEe
Confidence 24999999999999999987532 4555 8999999999999999999999999999999999999999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCC
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGA 564 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA 564 (1833)
++|++ |||++++|++.|+++|.++||.+++++++.+|+|||++|||
T Consensus 226 ~~Le~----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa 271 (464)
T cd00309 226 CKLEY----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGA 271 (464)
T ss_pred cCcce----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Confidence 99999 99999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHHH
Q 000223 565 QIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFA 644 (1833)
Q Consensus 565 ~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a 644 (1833)
++++++++++...||+|+.|++.++++ +++++|++|..+.+|||+|||+|+.+|+|+||+++||+++
T Consensus 272 ~ii~~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~ 338 (464)
T cd00309 272 TIVSRLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCA 338 (464)
T ss_pred EEecccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999764 5899999999889999999999999999999999999999
Q ss_pred HHHHHhcCeEEeCCCccCCCC
Q 000223 645 AYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 645 ~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+++++++++||||||++|+.+
T Consensus 339 ~~~~~~~~~~vpGGGa~E~~l 359 (464)
T cd00309 339 VRAAVEDGGIVPGGGAAEIEL 359 (464)
T ss_pred HHHHHHcCCcccCCcHHHHHH
Confidence 999999999999999999753
No 30
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-38 Score=400.52 Aligned_cols=272 Identities=22% Similarity=0.301 Sum_probs=249.6
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCC---CCCCc-----------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVG---DENDR----------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~---~~~~~----------- 407 (1833)
-+|+++||||| |+++|+++|++++.++++.|+||..|++||.+|+..++..+++++++ +..+.
T Consensus 73 ~~~~~~GDGTT---t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l 149 (472)
T cd03341 73 MQEEEIGDGTN---LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAI 149 (472)
T ss_pred HHhhhhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHh
Confidence 56889999999 99999999999999999999999999999999999999999887754 21221
Q ss_pred ----hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000223 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl 483 (1833)
.+|.+.|++|+++|+..++++ ..+.+|+ +.|+|++++||+..||++++|++|+++.. .|+++++||||+|+
T Consensus 150 ~sk~~~~~~~l~~l~~~a~~~~~~~--~~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~ 224 (472)
T cd03341 150 ASKQYGNEDFLSPLVAEACISVLPE--NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVF 224 (472)
T ss_pred cccccchHHHHHHHHHHHHHHHhhc--cCCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEE
Confidence 147889999999999999875 2357888 78999999999999999999999988765 45699999999999
Q ss_pred ccccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhC
Q 000223 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTG 563 (1833)
Q Consensus 484 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TG 563 (1833)
+++|++ |++|||++++|++.|+++|.++||.+++++++.+|+|||++||
T Consensus 225 ~~~Le~-------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tG 273 (472)
T cd03341 225 SCPFDI-------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVG 273 (472)
T ss_pred eccccC-------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhC
Confidence 999999 8999999999999999999999999999999999999999999
Q ss_pred CEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCC-CCceEEEecCCCHHHHHHHHHHHHHHH
Q 000223 564 AQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLKGANGDNLKKAKHVVQYGV 642 (1833)
Q Consensus 564 A~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~-~~g~TIlLRG~s~~~L~evKr~l~dal 642 (1833)
|++++++++++...||+|+.|++.++++ +++++|++|.. +.+|||+|||+|+.+++|+||.++||+
T Consensus 274 a~ii~~~~~l~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl 340 (472)
T cd03341 274 ATPLPRLGAPTPEEIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGV 340 (472)
T ss_pred CEEecccccCCHhHCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764 57999999987 789999999999999999999999999
Q ss_pred HHHHHHHhcCeEEeCCCccCCCC
Q 000223 643 FAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 643 ~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
+++++++.++++|||||++|..+
T Consensus 341 ~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 341 NVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred HHHHHHhcCCCEEeCcCHHHHHH
Confidence 99999999999999999999753
No 31
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=360.12 Aligned_cols=305 Identities=20% Similarity=0.267 Sum_probs=278.1
Q ss_pred hcccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc------
Q 000223 335 AILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR------ 407 (1833)
Q Consensus 335 ~~~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~------ 407 (1833)
-+|++-. -||+|+||||| ++++||++||+++.+++.+++||..|+.||+.|...++..+...+++...+.
T Consensus 77 kvLv~~S~vQD~EvGDGTT---SV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~D 153 (527)
T KOG0363|consen 77 KVLVDISKVQDDEVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFRED 153 (527)
T ss_pred hheeccccccccccCCCce---ehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHH
Confidence 3787777 56889999999 9999999999999999999999999999999999999999998888754332
Q ss_pred --------------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCce
Q 000223 408 --------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTS 473 (1833)
Q Consensus 408 --------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~ 473 (1833)
....+.|+.|+++|+..++- .-|+ +.|.|.|+.||++.||.+-+|++++|.+-- ..|+
T Consensus 154 Ll~iarTTL~SKiLsq~kehFaelavdAV~rLkG------s~nL-~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpk 225 (527)
T KOG0363|consen 154 LLKIARTTLSSKILSQDKEHFAELAVDAVLRLKG------STNL-EAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPK 225 (527)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------CCCc-cceeeehhcCCccccccccccceeccccCC-CCcc
Confidence 25578899999999998873 3355 669999999999999999999999998653 5799
Q ss_pred eecCCeEEEeccccchhccc--------cChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCe
Q 000223 474 KIDKPRFLILGGALEYQRVA--------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDIS 545 (1833)
Q Consensus 474 ~i~nprILLl~~~Ley~r~~--------~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~ 545 (1833)
+++|||||+-+.+++..|+. .....+.++-..|++.++..|+||.+++.|+.+...-|.++.+++|..+||+
T Consensus 226 riena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~ 305 (527)
T KOG0363|consen 226 RIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIM 305 (527)
T ss_pred cccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcc
Confidence 99999999999999998763 2456667777889999999999999999999999999999999999999999
Q ss_pred EEeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecC
Q 000223 546 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKG 625 (1833)
Q Consensus 546 vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG 625 (1833)
.+.+..-.-+||+|.+||+.|++.+|+....+||+|+.++...+++ ++++.|.||.-...|||+|||
T Consensus 306 aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe-------------d~li~FSGv~~GeActIVlrG 372 (527)
T KOG0363|consen 306 AIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE-------------DKLIKFSGVKLGEACTIVLRG 372 (527)
T ss_pred eeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc-------------cceeeecccccccceEEEEec
Confidence 9999999999999999999999999999999999999998887776 479999999998899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCC
Q 000223 626 ANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLP 663 (1833)
Q Consensus 626 ~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~ 663 (1833)
++.+.|+|.+|.++||+|++-..++|++++.|||+.++
T Consensus 373 at~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm 410 (527)
T KOG0363|consen 373 ATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEM 410 (527)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHH
Confidence 99999999999999999999999999999999999986
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.6e-38 Score=402.90 Aligned_cols=300 Identities=26% Similarity=0.393 Sum_probs=276.2
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCC-c-------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND-R------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~-~------------- 407 (1833)
.+|+++||||| ++++|+++|++++..++++|+||..|++||..|+...+..+++++++...+ .
T Consensus 54 ~~~~~~GDGtt---s~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k 130 (485)
T PF00118_consen 54 SQDEEVGDGTT---SVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSK 130 (485)
T ss_dssp HHHHHTSSHHH---HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTS
T ss_pred HHHhhhccccc---eeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhccccccc
Confidence 45779999999 999999999999999999999999999999999999999998876654332 1
Q ss_pred --hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEecc
Q 000223 408 --ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGG 485 (1833)
Q Consensus 408 --~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~ 485 (1833)
..|.+.|++|+++|+..+..+ +|+ +.++|+++.||+..||++++|++|++++.++.|+++++||||+++++
T Consensus 131 ~~~~~~~~l~~li~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~ 203 (485)
T PF00118_consen 131 ISSSWSDHLSKLIVDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNC 203 (485)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESS
T ss_pred ccccchhhhhhhHHHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeec
Confidence 489999999999999555432 566 56999999999999999999999999999999999999999999999
Q ss_pred ccchhcc------ccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHH
Q 000223 486 ALEYQRV------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIA 559 (1833)
Q Consensus 486 ~Ley~r~------~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIA 559 (1833)
+|++.+. .+....++.+.++|+++++.++++|.+.+++|||++++|++.|+++|.++||.++.+|++.+|+|||
T Consensus 204 ~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~ 283 (485)
T PF00118_consen 204 PLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIA 283 (485)
T ss_dssp EBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhh
Confidence 9999977 3467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEe--cCCCCCceEEEecCCCHHHHHHHHHH
Q 000223 560 RCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVE--GCPKPLGCTILLKGANGDNLKKAKHV 637 (1833)
Q Consensus 560 r~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fe--gc~~~~g~TIlLRG~s~~~L~evKr~ 637 (1833)
++|||.+++++++++...+|+|+.+++..+++ +++++|+ +|.....|||+|||+++.+++++|++
T Consensus 284 ~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~ 350 (485)
T PF00118_consen 284 RATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERS 350 (485)
T ss_dssp HHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHH
T ss_pred cccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHH
Confidence 99999999999999988899999998888765 5899999 68889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000223 638 VQYGVFAAYHLALETSFLADEGASLPQ 664 (1833)
Q Consensus 638 l~dal~a~~~l~lE~~~l~GgGa~~~~ 664 (1833)
+++|++++++++.++.++||||++|..
T Consensus 351 i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 351 IHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp HHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred HHHHHHHHHHhccCCceeecCcchhhh
Confidence 999999999999999999999999974
No 33
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-38 Score=394.67 Aligned_cols=301 Identities=19% Similarity=0.190 Sum_probs=276.7
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc--------------
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR-------------- 407 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~-------------- 407 (1833)
-+|+++||||| |+++||++|++++.+++++|+||..|++||.+|...++..+++++++...+.
T Consensus 76 ~qd~e~GDGTT---tavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~ 152 (524)
T COG0459 76 KQDDEAGDGTT---TAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKS 152 (524)
T ss_pred HHHHHhcCchH---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeee
Confidence 67889999999 9999999999999999999999999999999999999999999887744322
Q ss_pred -hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEee-ecccCCCc-eeecCCeEEEec
Q 000223 408 -ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKK-NVAHRRMT-SKIDKPRFLILG 484 (1833)
Q Consensus 408 -~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K-~~a~k~M~-~~i~nprILLl~ 484 (1833)
.++ +.|+.|+++|+..|+.... |+ +.|+|.+..||+..|+++++|++|+| .+.|..|| +.++||+|||++
T Consensus 153 ~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d 225 (524)
T COG0459 153 ANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLD 225 (524)
T ss_pred ccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEc
Confidence 245 8999999999999986421 66 77999999999999999999999999 67788999 899999999999
Q ss_pred cccchhccc-------cChhhHHHHHHHHH-HHHHHHHHHHHccCCc-EEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 485 GALEYQRVA-------NHLSSVDTLLQQEM-DHLKMAVTKIDAHHPN-VLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 485 ~~Ley~r~~-------~~~~sl~~il~qE~-e~L~~~v~rI~~~~pn-VVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
++|++.+.+ +....+..|.++|+ ++|..+|.+|+..+.| +++++++|++.++++|.+.+|.+++++++++|
T Consensus 226 ~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl 305 (524)
T COG0459 226 KKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDL 305 (524)
T ss_pred cccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhh
Confidence 999998764 34567889999999 9999999999999999 99999999999999999999999999999999
Q ss_pred -HHHHHHhCCEEccccccCCCCCCce--eeEEEEEEeeccccccCCCCccccceEEEEecCCC--CCceEEEecCCCHHH
Q 000223 556 -ERIARCTGAQIVPSIDHLTSQKLGY--CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK--PLGCTILLKGANGDN 630 (1833)
Q Consensus 556 -erIAr~TGA~Iissld~L~~~~LG~--C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~--~~g~TIlLRG~s~~~ 630 (1833)
++|+++|||.+++.++++++..+|. |+.|+..++++ ..+.+|++|.. +..|||+|||+|+.+
T Consensus 306 ~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~tI~vrgate~~ 372 (524)
T COG0459 306 GERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVATILVRGATEVE 372 (524)
T ss_pred HHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEEEEECCccHhH
Confidence 8999999999999999999999999 99999998765 36889999985 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 631 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 631 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
++|+||+++|||++++++++++++++|||+++.++
T Consensus 373 ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~ 407 (524)
T COG0459 373 LDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEA 407 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHH
Confidence 99999999999999999999999999999999753
No 34
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-38 Score=356.15 Aligned_cols=314 Identities=19% Similarity=0.270 Sum_probs=278.6
Q ss_pred cccccc-cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCC-Cc------
Q 000223 336 ILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------ 407 (1833)
Q Consensus 336 ~~~~~~-~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~-~~------ 407 (1833)
-|++.. -||.++||||| |+|+|||+||..+.+++++|+||..|...|.+|....+..+.+++.+.+- +.
T Consensus 84 mLvelS~aQD~eaGDGTT---sVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~ 160 (534)
T KOG0358|consen 84 MLVELSAAQDSEAGDGTT---SVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKS 160 (534)
T ss_pred HHHHhhhhccccccCCce---EEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHH
Confidence 455555 56789999999 99999999999999999999999999999999999999999997776432 22
Q ss_pred ----------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecC
Q 000223 408 ----------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDK 477 (1833)
Q Consensus 408 ----------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~n 477 (1833)
..+...|++++++|+..|.. ..+..++|+ ..|||.|..||.++|+++|+|+||++......-|+++++
T Consensus 161 atTsLnSKvvSq~s~llapmAVdAV~kv~d-p~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriek 238 (534)
T KOG0358|consen 161 ATTSLNSKVVSQYSSLLAPMAVDAVLKVID-PENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEK 238 (534)
T ss_pred HHhHhhHHHHHhhccccchHHHHHHHhccC-cccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhh
Confidence 25566789999999998763 234556888 778999999999999999999999999887778999999
Q ss_pred CeEEEeccccchhcc-------ccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCc-----CHHHHHHHHHcCCe
Q 000223 478 PRFLILGGALEYQRV-------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDIS 545 (1833)
Q Consensus 478 prILLl~~~Ley~r~-------~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~ 545 (1833)
+||.|++|-|...|+ .+.+..++.+++.|+.||.+++++|++.|.||+|+||+| ++.|++||.+.+|+
T Consensus 239 AkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkim 318 (534)
T KOG0358|consen 239 AKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIM 318 (534)
T ss_pred ceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEE
Confidence 999999999998875 357899999999999999999999999999999999975 88999999999999
Q ss_pred EEeecChHHHHHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCC-CCceEEEec
Q 000223 546 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLK 624 (1833)
Q Consensus 546 vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~-~~g~TIlLR 624 (1833)
++..+.++++|.|++.+|+.++.++|++++.+||+++.++...- .| . .+++.+.|+.+ ..+|||++|
T Consensus 319 vikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~------~G---~---gkivk~tg~~n~g~tvsil~R 386 (534)
T KOG0358|consen 319 VIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDS------SG---E---GKIVKITGIQNAGRTVSILLR 386 (534)
T ss_pred EEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhccc------CC---C---ccEEEEEEeecCCCceEEEEe
Confidence 99999999999999999999999999999999999998865531 11 1 36888999887 689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCCC
Q 000223 625 GANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLP 666 (1833)
Q Consensus 625 G~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~~ 666 (1833)
|++.-.|+|.+|.++||+|+++.+++...+++|||+-++++.
T Consensus 387 Gsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia 428 (534)
T KOG0358|consen 387 GSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIA 428 (534)
T ss_pred cCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHH
Confidence 999999999999999999999999999999999999887643
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-37 Score=355.75 Aligned_cols=313 Identities=19% Similarity=0.207 Sum_probs=282.7
Q ss_pred hcccccccc-cCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhC-CCCCCCC-Cc----
Q 000223 335 AILFDDDDD-EGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDEN-DR---- 407 (1833)
Q Consensus 335 ~~~~~~~~~-ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~-is~~~~~-~~---- 407 (1833)
.+|++...+ |.++||||| +++++|++|++++.+++.+++||..++.||+.|+..++....+ +.++.+. ..
T Consensus 76 KiLvelaq~qd~evgDgtt---svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Li 152 (545)
T KOG0360|consen 76 KVLVELAQLQDEEVGDGTT---SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILI 152 (545)
T ss_pred HHHHHHHHhccccccCCce---EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHH
Confidence 488888865 679999999 9999999999999999999999999999999999999988764 4443221 10
Q ss_pred ------------hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceee
Q 000223 408 ------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKI 475 (1833)
Q Consensus 408 ------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i 475 (1833)
..-.++++.++++|+..++.-..+|....|-+-|.|.|..|++..||.++.|+.++..+++..|+.++
T Consensus 153 n~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i 232 (545)
T KOG0360|consen 153 NLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRI 232 (545)
T ss_pred HHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhcccccc
Confidence 25577899999999999886544677777779999999999999999999999999999999999999
Q ss_pred cCCeEEEeccccchhcc-------ccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEe
Q 000223 476 DKPRFLILGGALEYQRV-------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVL 548 (1833)
Q Consensus 476 ~nprILLl~~~Ley~r~-------~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~ 548 (1833)
+|+||++++|.|.-.+. ...+..++.+.+.|.+..+..+++|++.|+||||+.++|++.+++||.++|+++|+
T Consensus 233 ~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVr 312 (545)
T KOG0360|consen 233 KNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVR 312 (545)
T ss_pred ccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhH
Confidence 99999999999887653 35678889999999999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHHhCCEEccccccCC------CCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEE
Q 000223 549 NIKRPLLERIARCTGAQIVPSIDHLT------SQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTIL 622 (1833)
Q Consensus 549 nVk~~~LerIAr~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIl 622 (1833)
++++.+|++||++|||++++++.++. +..+|+|+.|.+.+|++ +.++.+.|.... .|+|+
T Consensus 313 R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiI 378 (545)
T KOG0360|consen 313 RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASII 378 (545)
T ss_pred HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEE
Confidence 99999999999999999999998664 57899999999999887 579999998776 99999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000223 623 LKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 664 (1833)
Q Consensus 623 LRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 664 (1833)
|||+|...++|++|.+|||+++++..+++++++|||||++..
T Consensus 379 LrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 379 LRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred EecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHH
Confidence 999999999999999999999999999999999999999863
No 36
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.9e-35 Score=372.49 Aligned_cols=276 Identities=17% Similarity=0.187 Sum_probs=244.7
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
.+|+++||||| |+++||++||+++.++++.|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 79 ~qd~e~GDGTT---tvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~ 155 (542)
T PRK00013 79 KTNDVAGDGTT---TATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDE 155 (542)
T ss_pred hcCcccCCccc---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchH
Confidence 67889999999 9999999999999999999999999999999999999999999887653211 25889
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC-------CceeecCCeEEEecc
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILGG 485 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~-------M~~~i~nprILLl~~ 485 (1833)
.|++|+++|+..++++ +.|.|++..| ...++++++|++|++++.++. |++.++||+||++++
T Consensus 156 ~ls~lv~~Av~~v~~~----------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~ 224 (542)
T PRK00013 156 EIGKLIAEAMEKVGKE----------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224 (542)
T ss_pred HHHHHHHHHHHHhCcC----------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcC
Confidence 9999999999999753 2488998876 888999999999999999984 589999999999998
Q ss_pred ccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcC------CeEEeecC-----hHH
Q 000223 486 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD------ISLVLNIK-----RPL 554 (1833)
Q Consensus 486 ~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~g------I~vv~nVk-----~~~ 554 (1833)
.|.. ..+ |..++++|.+.+++|||++++|++.|+++|..++ |.+|++++ +.+
T Consensus 225 ~i~~------~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~ 287 (542)
T PRK00013 225 KISN------IQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAM 287 (542)
T ss_pred ccCC------HHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhh
Confidence 5531 222 3366788999999999999999999999999997 88888775 889
Q ss_pred HHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCC------------
Q 000223 555 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 617 (1833)
Q Consensus 555 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~------------ 617 (1833)
|+|||++|||++++ ++++++...||+|+.|++.. +++++|+||..+.
T Consensus 288 l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~ 351 (542)
T PRK00013 288 LEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQ 351 (542)
T ss_pred HHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 79999999999999999864 4789999998765
Q ss_pred -----------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 618 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 618 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
.|||+|||+|+.+++|+||.++||++++++++.++ |||||||+|.++
T Consensus 352 ~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 352 IEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 68899999999999999999999999999999997 999999999753
No 37
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.4e-35 Score=372.02 Aligned_cols=275 Identities=17% Similarity=0.179 Sum_probs=240.4
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
-||+++||||| |+++||++||+++.++++.|+||..|++||.+|+..++..+++++++..+.. .++.+
T Consensus 79 ~qd~e~GDGTT---tvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~ 155 (542)
T PRK12849 79 KTNDVAGDGTT---TATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDE 155 (542)
T ss_pred hcCCccCCCcc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChH
Confidence 66889999999 9999999999999999999999999999999999999999999887653221 26789
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcce-eeEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSE-SMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~d-S~vI~GvVf~K~~a~k~-------M~~~i~nprILLl~ 484 (1833)
.|++|+++|+..++++ +.+.|+ .||+..| +++++|++|++++.++. |+..++||+||+++
T Consensus 156 ~l~~lv~~Av~~v~~~----------g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 156 EIGELIAEAMEKVGKD----------GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHHhccC----------CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 9999999999999753 234444 5888876 79999999999999984 69999999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHc------CCeEEeecC-----hH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----RP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~vv~nVk-----~~ 553 (1833)
+.|.. ..+ +..++++|.+.+++|||++++|++.|+++|.++ ||.+|++++ +.
T Consensus 224 ~~i~~------~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~ 286 (542)
T PRK12849 224 KKISS------LQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKA 286 (542)
T ss_pred CCcCC------HHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHh
Confidence 85532 222 334678899999999999999999999999999 899999886 55
Q ss_pred HHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCC------------
Q 000223 554 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 616 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~------------ 616 (1833)
+|+|||++|||.+++ ++++++...||+|+.|++.. +++++|+||..+
T Consensus 287 ~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~ 350 (542)
T PRK12849 287 MLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRR 350 (542)
T ss_pred HHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999 68999989999999999764 368889998775
Q ss_pred -----------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 617 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 617 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
..|||+|||+|+.+++|+||+++||++++++++.++ |||||||++..+
T Consensus 351 ~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~l 421 (542)
T PRK12849 351 QIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHH
Confidence 379999999999999999999999999999999997 999999999753
No 38
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=6.3e-35 Score=372.29 Aligned_cols=275 Identities=15% Similarity=0.137 Sum_probs=241.8
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
-+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 91 ~qd~evGDGTT---tvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~ 167 (555)
T PTZ00114 91 KTNDKAGDGTT---TATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDV 167 (555)
T ss_pred hhccccCCccc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChH
Confidence 67899999999 9999999999999999999999999999999999999999999887653211 25678
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCccee-eEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vI~GvVf~K~~a~k~-------M~~~i~nprILLl~ 484 (1833)
.|++|+++|+..|+++ + .|.++.||+..|+ ++++|++|++++.++. |+..++||+||+++
T Consensus 168 ~l~~li~eAv~~vg~~----------g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d 235 (555)
T PTZ00114 168 EIGSLIADAMDKVGKD----------G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTD 235 (555)
T ss_pred HHHHHHHHHHHHhCcC----------C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEc
Confidence 8999999999999753 1 2777889999998 7999999999999985 58999999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcC------CeEEee-----cChH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD------ISLVLN-----IKRP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~g------I~vv~n-----Vk~~ 553 (1833)
++|+.. .+ +..++++|.+.+.+|||++++|++.|+++|..++ |.++++ +++.
T Consensus 236 ~~L~~~------~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~ 298 (555)
T PTZ00114 236 KKISSI------QS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKD 298 (555)
T ss_pred CCCCCH------HH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHH
Confidence 999831 11 4556778999999999999999999999999997 888866 7889
Q ss_pred HHHHHHHHhCCEEcccc------ccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCC-------------
Q 000223 554 LLERIARCTGAQIVPSI------DHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCP------------- 614 (1833)
Q Consensus 554 ~LerIAr~TGA~Iissl------d~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~------------- 614 (1833)
+|+|||++|||+++++. ++++...||+|+.|++++ . .+++|+||.
T Consensus 299 ~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~ 362 (555)
T PTZ00114 299 ILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLR 362 (555)
T ss_pred HHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999997 778888999999999987 1 355666665
Q ss_pred ----------------------CCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 615 ----------------------KPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 615 ----------------------~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
.+..|||+|||+|+.+++|+||+++||++++++++.++ |||||||++.++
T Consensus 363 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~ 434 (555)
T PTZ00114 363 SQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRA 434 (555)
T ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHH
Confidence 56799999999999999999999999999999999987 999999999753
No 39
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-36 Score=344.91 Aligned_cols=304 Identities=21% Similarity=0.260 Sum_probs=280.0
Q ss_pred ccccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCC--------------
Q 000223 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND-------------- 406 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~-------------- 406 (1833)
--+|+..||||| ++|+|.+||++++...+..|+||..|..||..|....|..++.++.+.+.+
T Consensus 81 tAqdd~tGDGtt---S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv 157 (520)
T KOG0359|consen 81 TAQDDITGDGTT---SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKV 157 (520)
T ss_pred HHhhcccCCCcc---eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcc
Confidence 346678999999 999999999999999999999999999999999999999999776553321
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEeccc
Q 000223 407 RESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGA 486 (1833)
Q Consensus 407 ~~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~~ 486 (1833)
...-.+.+++++++|+..+.+ ..+.+|+ ..|+|.+..-++..|+.+|+|+|++++..|+.||++++|+.||+++-+
T Consensus 158 ~~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvS 233 (520)
T KOG0359|consen 158 HAELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVS 233 (520)
T ss_pred cHHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeecc
Confidence 147788899999999999983 4567899 899999999999999999999999999999999999999999999999
Q ss_pred cchhcccc-------ChhhHHHHHHHHHHHHHHHHHHHHccCC----cEEEEcCCcCHHHHHHHHHcCCeEEeecChHHH
Q 000223 487 LEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHP----NVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 555 (1833)
Q Consensus 487 Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~rI~~~~p----nVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~L 555 (1833)
|||+|.+- ...+-+.+...|++++.+.+.+|+.++- -|||.||+|++..++.|.+.||.++++.|+..|
T Consensus 234 LEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNm 313 (520)
T KOG0359|consen 234 LEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNM 313 (520)
T ss_pred ccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhH
Confidence 99999763 3455688899999999999999998875 467889999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHH
Q 000223 556 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 556 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
||+..+||+..+.|+|+|++..||+|+.+++.++++| +|+|+|+|+.|..|||+++|+|...+..+|
T Consensus 314 ERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEE-------------kfTFIE~~~~p~S~TiLikgpnkht~tQik 380 (520)
T KOG0359|consen 314 ERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEE-------------KFTFIEKCNNPSSVTILIKGPNKHTITQIK 380 (520)
T ss_pred HHHHHhhccceecccccCChhhccccceeEEeeccce-------------eeEeeecCCCCcceEEEEeCCccchHHHHH
Confidence 9999999999999999999999999999999999884 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000223 636 HVVQYGVFAAYHLALETSFLADEGASLPQ 664 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~~l~GgGa~~~~ 664 (1833)
.+++|++.++++.+.++.+++|+|+.+..
T Consensus 381 dairdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 381 DAIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred HHHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 99999999999999999999999999853
No 40
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.9e-35 Score=369.99 Aligned_cols=276 Identities=16% Similarity=0.185 Sum_probs=244.2
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
-+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+...+..+++++++..+.. ..+.+
T Consensus 80 ~qd~e~GDGTT---tvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~ 156 (541)
T PRK12851 80 KTNDVAGDGTT---TATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDA 156 (541)
T ss_pred hhhHhhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChH
Confidence 66889999999 9999999999999999999999999999999999999999999887643221 26889
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC-------CceeecCCeEEEecc
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILGG 485 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~-------M~~~i~nprILLl~~ 485 (1833)
.|++|+++|+..|+++ +.|.|++.. |...++++++|++|++++.++. |+++++||+||++++
T Consensus 157 ~l~~lv~~Av~~vg~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~ 225 (541)
T PRK12851 157 EIGRLVAEAMEKVGNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEK 225 (541)
T ss_pred HHHHHHHHHHHHhccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcC
Confidence 9999999999999753 346777765 6778899999999999999984 999999999999999
Q ss_pred ccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCC------eEEee-----cChHH
Q 000223 486 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLN-----IKRPL 554 (1833)
Q Consensus 486 ~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~vv~n-----Vk~~~ 554 (1833)
+|+. ++ .+..++++|.+.+++|||++++|++.|+++|..+|| .+|+. +++.+
T Consensus 226 ~i~~---------~~--------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~ 288 (541)
T PRK12851 226 KISN---------LQ--------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAM 288 (541)
T ss_pred CcCc---------HH--------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhH
Confidence 8641 11 255678899999999999999999999999999998 66775 89999
Q ss_pred HHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCC------------
Q 000223 555 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 617 (1833)
Q Consensus 555 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~------------ 617 (1833)
|+|||++|||++++ ++++++..+||+|+.|++++ +++++|+||..+.
T Consensus 289 l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~ 352 (541)
T PRK12851 289 LEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDGAGSKTEIEGRVAQIRAQ 352 (541)
T ss_pred HHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 68888888999999999876 3688899987653
Q ss_pred -----------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 618 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 618 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
.+||+|||+|+.+++|+||+++||++++++++.++ |||||||++.+.
T Consensus 353 ~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 353 IEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 78999999999999999999999999999999997 999999999753
No 41
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.1e-34 Score=368.24 Aligned_cols=275 Identities=19% Similarity=0.205 Sum_probs=240.1
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 78 ~qd~e~GDGTT---tvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~ 154 (524)
T TIGR02348 78 KTNDVAGDGTT---TATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDE 154 (524)
T ss_pred ccCceeCCCcc---hHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChH
Confidence 67889999999 9999999999999999999999999999999999999999999887653211 26788
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCc-ceeeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vI~GvVf~K~~a~k~M-------~~~i~nprILLl~ 484 (1833)
.|+.|+++|+..++++ +.|.|+. ||.. .++++++|++|++++.++.| +..++||+||+++
T Consensus 155 ~l~~lv~~A~~~v~~~----------~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 222 (524)
T TIGR02348 155 EIGSLIAEAMEKVGKD----------GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITD 222 (524)
T ss_pred HHHHHHHHHHHHhCcC----------CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeecc
Confidence 9999999999999753 2345554 6666 67999999999999999865 8999999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHc------CCeEEeecC-----hH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----RP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~vv~nVk-----~~ 553 (1833)
+.|.- ..+ +..++++|.+.+++|||++++|++.|+++|..+ ||.+|++++ +.
T Consensus 223 ~~i~~------~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~ 285 (524)
T TIGR02348 223 KKISN------IKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKA 285 (524)
T ss_pred CCcCC------HHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhh
Confidence 86442 111 456678899999999999999999999999987 888997774 48
Q ss_pred HHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCC-----------
Q 000223 554 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL----------- 617 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~----------- 617 (1833)
+|+|||++|||++++ ++++++..+||+|+.|++.+ +++++++||..+.
T Consensus 286 ~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~ 349 (524)
T TIGR02348 286 MLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKA 349 (524)
T ss_pred hHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 89999999999999999875 3688999887654
Q ss_pred ------------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 618 ------------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 618 ------------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
.+||+|||+|+.+++|+||.++||++++++++.++ |||||||++.++
T Consensus 350 ~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~ 420 (524)
T TIGR02348 350 QIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRA 420 (524)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 58899999999999999999999999999999997 999999999753
No 42
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.7e-34 Score=365.78 Aligned_cols=275 Identities=17% Similarity=0.167 Sum_probs=240.8
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
.||+++||||| |+++||++|++++.++++.|+||..|++||..|+..++..+++++++..+.. .+..+
T Consensus 77 ~qd~e~GDGTT---tvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~ 153 (520)
T cd03344 77 KTNDVAGDGTT---TATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDE 153 (520)
T ss_pred hhccccCCCcc---hHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChH
Confidence 67899999999 9999999999999999999999999999999999999999999887653211 14478
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcce-eeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSE-SMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~d-S~vI~GvVf~K~~a~k~M-------~~~i~nprILLl~ 484 (1833)
.+++|+++|+..++++ +.|.| .+||+..| +++++|++|++++.++.| +.+++||+||+++
T Consensus 154 ~l~~lv~~A~~~v~~~----------~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 154 EIGELIAEAMEKVGKD----------GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHHhccC----------CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 8999999999998753 23555 46999999 799999999999998764 5789999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCC------eEEeec-----ChH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLNI-----KRP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~vv~nV-----k~~ 553 (1833)
++|... .+ +..++++|.+.+++|||++++|++.|+++|.++|| .+|+.+ +++
T Consensus 222 ~~l~~~------~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~ 284 (520)
T cd03344 222 KKISSI------QE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKA 284 (520)
T ss_pred CCCCCH------HH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHH
Confidence 996332 22 34467889999999999999999999999999999 776655 899
Q ss_pred HHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCC------------
Q 000223 554 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 616 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~------------ 616 (1833)
+|+|||++|||.+++ +++.++...||+|+.|++++ +++++|+||..+
T Consensus 285 ~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~ 348 (520)
T cd03344 285 MLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTIIGGAGDKAAIKARIAQIRK 348 (520)
T ss_pred HHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999 78888888999999999876 368899998764
Q ss_pred -----------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 617 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 617 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
..|||+|||+|+.+++|++|.++||++++++++.++ |||||||++...
T Consensus 349 ~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~ 419 (520)
T cd03344 349 QIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRA 419 (520)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHH
Confidence 589999999999999999999999999999999997 999999999753
No 43
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6e-34 Score=362.99 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=240.6
Q ss_pred ccccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhH
Q 000223 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWL 411 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~ 411 (1833)
-.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++...+. ..-+
T Consensus 79 ~~q~~e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~ 155 (545)
T PRK12852 79 SKTNDLAGDGTT---TATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGD 155 (545)
T ss_pred hhcCceecCCcc---hHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCCh
Confidence 367899999999 9999999999999999999999999999999999999999999887643221 1336
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCc-ceeeEEEeeeEeeecccCC-------CceeecCCeEEEe
Q 000223 412 EIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLIL 483 (1833)
Q Consensus 412 ~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vI~GvVf~K~~a~k~-------M~~~i~nprILLl 483 (1833)
+.|++|+++|+..|+++ +.|.|+. ||.. .++++++|++|++++.++. |+..++||+|||+
T Consensus 156 ~~l~~li~eA~~~vg~~----------g~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 156 AAIGKMIAQAMQKVGNE----------GVITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHHhccC----------Cceeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 78999999999999864 2355553 7775 7999999999999999984 9999999999999
Q ss_pred ccccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHc------CCeEEeecC-----h
Q 000223 484 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----R 552 (1833)
Q Consensus 484 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~vv~nVk-----~ 552 (1833)
++.|.. + +++..+++.|.+.+++|||++++|++.|+++|..+ +|.+|++.+ +
T Consensus 224 d~~i~~---------~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 224 EKKLSG---------L--------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred cCccCC---------H--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 864422 1 25566788999999999999999999999999986 799998654 8
Q ss_pred HHHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCC-----------
Q 000223 553 PLLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP----------- 616 (1833)
Q Consensus 553 ~~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~----------- 616 (1833)
.+|+|||++|||++++ ++++++...||+|+.|++.+ +.+++|+||..+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~ 350 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIVNGAGKKADIEARVGQIK 350 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999 78899989999999999886 357888888753
Q ss_pred ------------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 617 ------------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 617 ------------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
..|||+|||+|+.+++|+||.++||++++++++.++ |||||||++.++
T Consensus 351 ~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~ 422 (545)
T PRK12852 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRA 422 (545)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHH
Confidence 678999999999999999999999999999999997 999999999753
No 44
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.7e-34 Score=361.21 Aligned_cols=276 Identities=16% Similarity=0.173 Sum_probs=238.9
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++.+..+.. .+..+
T Consensus 80 ~qd~e~GDGTT---t~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~ 156 (544)
T PRK12850 80 KTNDLAGDGTT---TATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDE 156 (544)
T ss_pred hhcchhcCCcc---hHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHH
Confidence 57899999999 9999999999999999999999999999999999999999998887643211 14578
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCC-------ceeecCCeEEEecc
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILGG 485 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M-------~~~i~nprILLl~~ 485 (1833)
.|++|+++|+..|+++ +.+|+ +..+..| .++++++|++|++++.++.| +..++||+||++++
T Consensus 157 ~l~~lv~eAv~~vg~~----g~i~v----~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 225 (544)
T PRK12850 157 SIGEMIAEAMDKVGKE----GVITV----EEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225 (544)
T ss_pred HHHHHHHHHHHHhccc----Cceee----EEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEec
Confidence 8999999999999753 23343 1112333 68899999999999999864 89999999999998
Q ss_pred ccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCC------eEEee-----cChHH
Q 000223 486 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLN-----IKRPL 554 (1833)
Q Consensus 486 ~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~vv~n-----Vk~~~ 554 (1833)
.|. +++ .+..++++|.+.+++|||++++|++.|+++|..+|| .+|++ +++.+
T Consensus 226 ~i~---------~~~--------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~ 288 (544)
T PRK12850 226 KIS---------NLQ--------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAM 288 (544)
T ss_pred ccC---------CHH--------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHH
Confidence 542 111 266678899999999999999999999999999999 88887 89999
Q ss_pred HHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCC------------
Q 000223 555 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 617 (1833)
Q Consensus 555 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~------------ 617 (1833)
|+|||++|||++++ ++++++...||+|+.|++.+ +++++|+||..+.
T Consensus 289 le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~ 352 (544)
T PRK12850 289 LEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQ 352 (544)
T ss_pred HHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 78888888999999998775 3688899987753
Q ss_pred -----------------------ceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 618 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 618 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
.|||+|||+|+.+++|+||+++||++++++++.++ |||||||+|..+
T Consensus 353 ~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~ 422 (544)
T PRK12850 353 IEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (544)
T ss_pred HHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 79999999999999999999999999999999996 999999999753
No 45
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.9e-33 Score=355.54 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=235.0
Q ss_pred ccccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhH
Q 000223 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWL 411 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~ 411 (1833)
..+++++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..++.++.+..+.. .++.
T Consensus 78 ~~~~~e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~ 154 (529)
T CHL00093 78 SKTNDVAGDGTT---TATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGND 154 (529)
T ss_pred HhcCceecCCCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCh
Confidence 456779999999 9999999999999999999999999999999999999999999887754221 2678
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000223 412 EIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 484 (1833)
Q Consensus 412 ~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~-------M~~~i~nprILLl~ 484 (1833)
+.|+.|+++|+..|+++ +.|.++- .+|...++++++|++|++++.++. |+..++||+||+++
T Consensus 155 ~~l~~lv~eAv~~vg~~----------g~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 155 EEVGSMIADAIEKVGRE----------GVISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHHhccC----------CceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 99999999999999753 2333322 234567789999999999999875 44469999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHH--HH----cCCeEEeec-----ChH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYL--LA----KDISLVLNI-----KRP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L--~~----~gI~vv~nV-----k~~ 553 (1833)
++|++.+ ..+..++++|.+.+.+|||++++|++.|+.+| .+ +||.+|+++ ++.
T Consensus 224 ~~le~~~----------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~ 287 (529)
T CHL00093 224 KKITLVQ----------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKA 287 (529)
T ss_pred CCCCchH----------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHH
Confidence 9999753 12666778999999999999999999877776 55 489999988 458
Q ss_pred HHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecC---------CCC---
Q 000223 554 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGC---------PKP--- 616 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc---------~~~--- 616 (1833)
+|+|||++|||++++ ++++++..+||+|+.+++++ +++++|+++ ...
T Consensus 288 ~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~ 351 (529)
T CHL00093 288 MLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQ 351 (529)
T ss_pred HHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHH
Confidence 899999999999999 79999989999999999875 256777642 211
Q ss_pred ----------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 617 ----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 617 ----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
..+||+|||+|+.+++|+||+++||++++++++.++ |||||||++..+
T Consensus 352 ~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~ 421 (529)
T CHL00093 352 IEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHL 421 (529)
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHH
Confidence 367899999999999999999999999999999997 999999999753
No 46
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=8.7e-33 Score=351.36 Aligned_cols=275 Identities=17% Similarity=0.155 Sum_probs=237.8
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+.+++++...+. .+.++
T Consensus 80 ~qd~e~GDGTT---TvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~ 156 (546)
T PRK14104 80 KSADAAGDGTT---TATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDA 156 (546)
T ss_pred hhcccccCccc---HHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCch
Confidence 67899999999 9999999999999999999999999999999999999999988877643221 25567
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCc-ceeeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vI~GvVf~K~~a~k~M-------~~~i~nprILLl~ 484 (1833)
.|++|+++|+..|+++ +.|.|..+ +.. .++++++|++|++++.++.| +.+++||+||+++
T Consensus 157 ~i~~lv~~Av~~vg~~----------g~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d 224 (546)
T PRK14104 157 EIGKFLADAMKKVGNE----------GVITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINE 224 (546)
T ss_pred HHHHHHHHHHHHhccC----------CceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEeh
Confidence 7999999999999753 35666664 455 58999999999999999855 7889999999998
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHH------cCCeEEeecC-----hH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLA------KDISLVLNIK-----RP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~------~gI~vv~nVk-----~~ 553 (1833)
.. +.+++. |..++++|.+.+.+|||++++|++.|+++|.. .+|.+|++++ +.
T Consensus 225 ~~---------i~~~~~--------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~ 287 (546)
T PRK14104 225 KK---------LSSLNE--------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKA 287 (546)
T ss_pred hh---------hcCHHH--------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHH
Confidence 22 222222 55678899999999999999999999999985 5788887665 89
Q ss_pred HHHHHHHHhCCEEccc-----cccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCC------------
Q 000223 554 LLERIARCTGAQIVPS-----IDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 616 (1833)
Q Consensus 554 ~LerIAr~TGA~Iiss-----ld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~------------ 616 (1833)
+|+|||++|||+++++ +++++...||+|+.+++.. +.+++++||..+
T Consensus 288 ~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~ 351 (546)
T PRK14104 288 MLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIVNGAGKKADIEARVAQIKA 351 (546)
T ss_pred HHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 8999989999999988622 468889999875
Q ss_pred -----------------------CceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 617 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 617 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
..+||+|||+|+.+++|+||.++||++++++++.++ ||||||+++.++
T Consensus 352 ~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~ 422 (546)
T PRK14104 352 QIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRA 422 (546)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHH
Confidence 788999999999999999999999999999999997 999999999753
No 47
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.4e-32 Score=311.50 Aligned_cols=193 Identities=34% Similarity=0.495 Sum_probs=183.6
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEecccc
Q 000223 408 ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGAL 487 (1833)
Q Consensus 408 ~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~~L 487 (1833)
..|.+.|++|+++|+..++++.. ++..++|+|++++||++.||++++|++|+|+++|+.|+++++||||||++++|
T Consensus 17 ~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~l 92 (209)
T cd03333 17 SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPL 92 (209)
T ss_pred hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCe
Confidence 57999999999999999987421 55559999999999999999999999999999999999999999999999999
Q ss_pred chhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEc
Q 000223 488 EYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIV 567 (1833)
Q Consensus 488 ey~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA~Ii 567 (1833)
+| |||++++|++.|+++|.++||++++++++.+|+|||++|||+++
T Consensus 93 e~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii 138 (209)
T cd03333 93 EY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIV 138 (209)
T ss_pred eE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEe
Confidence 99 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000223 568 PSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYH 647 (1833)
Q Consensus 568 ssld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~ 647 (1833)
+++++++.+.||+|+.|+++++++ +++++|+||..+.+|||+|||+|..+|+|+||+++||++|+|+
T Consensus 139 ~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~ 205 (209)
T cd03333 139 SSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRA 205 (209)
T ss_pred cccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765 6899999999999999999999999999999999999999999
Q ss_pred HHhc
Q 000223 648 LALE 651 (1833)
Q Consensus 648 l~lE 651 (1833)
++++
T Consensus 206 ~~~~ 209 (209)
T cd03333 206 AVEE 209 (209)
T ss_pred HhhC
Confidence 9864
No 48
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=3.3e-33 Score=356.88 Aligned_cols=290 Identities=14% Similarity=0.153 Sum_probs=238.7
Q ss_pred ccccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc--------hhhHH
Q 000223 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR--------ESWLE 412 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~--------~~w~~ 412 (1833)
..+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+..+.. .++++
T Consensus 134 ~~qd~evGDGTT---TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~ 210 (600)
T PLN03167 134 AKTNDLAGDGTT---TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNY 210 (600)
T ss_pred HhhhhhhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcH
Confidence 367899999999 9999999999999999999999999999999999999999998877643211 25677
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCccee-eEEEeeeEeeecccC-------CCceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHR-------RMTSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vI~GvVf~K~~a~k-------~M~~~i~nprILLl~ 484 (1833)
.|++|+++|+..|+++ +.|.++ .||+..|+ ++++|++|++++.++ +|+.+++||+|||++
T Consensus 211 ~i~~liaeAv~~Vg~~----------g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d 278 (600)
T PLN03167 211 EVGNMIAEAMSKVGRK----------GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278 (600)
T ss_pred HHHHHHHHHHHHhccC----------CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEc
Confidence 8999999999999753 223333 59999997 899999999999998 899999999999999
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHH------HcCCeEEeecC-----hH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLL------AKDISLVLNIK-----RP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~------~~gI~vv~nVk-----~~ 553 (1833)
+.|. ...++.+ +++++...+++|||++++|++.|+++|. ..+|.+|+.++ +.
T Consensus 279 ~~i~------~~~~l~~-----------~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~ 341 (600)
T PLN03167 279 KKIT------NARDLIG-----------ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQ 341 (600)
T ss_pred cccC------CHHHHHH-----------HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHH
Confidence 7432 2233333 3347788999999999999999999999 77899999885 88
Q ss_pred HHHHHHHHhCCEEcc-----ccccCCCCCCceeeEEEEEEeeccccccCCCCc--cccceEEEEecCC------------
Q 000223 554 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGK--KLSKTLMFVEGCP------------ 614 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~--~~~ktl~~fegc~------------ 614 (1833)
.|+|||++|||++++ ++++++...||+|+.|++++... .+.|..|. ...+++.+|++|.
T Consensus 342 ~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t--~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l 419 (600)
T PLN03167 342 YLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTT--TIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKL 419 (600)
T ss_pred HHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccc--eeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHH
Confidence 999999999999999 78888889999999999987111 11111111 1124667777764
Q ss_pred C------CCceEEE-ecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000223 615 K------PLGCTIL-LKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 615 ~------~~g~TIl-LRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 665 (1833)
. ..++||+ |||+|+.+++|+||+++||++++++++.++ +|||||++|..+
T Consensus 420 ~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 420 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred HHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 1 1256776 999999999999999999999999999999 999999999753
No 49
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.1e-32 Score=316.64 Aligned_cols=303 Identities=19% Similarity=0.224 Sum_probs=271.0
Q ss_pred ccccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCC---CCCCch---------
Q 000223 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVG---DENDRE--------- 408 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~---~~~~~~--------- 408 (1833)
..|+.++||||+ ++|+||++||++++.+|..|++|.+|+.||..|....+..+.++.+. +..|.+
T Consensus 90 ~~q~~~iGDgtn---fvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~s 166 (537)
T KOG0362|consen 90 QMQEEEIGDGTN---FVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMS 166 (537)
T ss_pred HHHHHhhCCCce---EeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHH
Confidence 466779999999 99999999999999999999999999999999999999888887544 222222
Q ss_pred ---hhHHHHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEecc
Q 000223 409 ---SWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGG 485 (1833)
Q Consensus 409 ---~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~ 485 (1833)
...++++.|+++|+..+.|. ..|++ ++|+|+||.||+..+|+++.|+||++.+.. -+++-+.+||.+..|
T Consensus 167 kq~~~ed~l~~lVa~ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG--~v~~ak~arvAvf~c 239 (537)
T KOG0362|consen 167 KQYGNEDFLTKLVAKACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPEG--EVKSAKDARVAVFAC 239 (537)
T ss_pred hhcchHHHHHHHHHHHHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccCC--cccccccceeEEEec
Confidence 44788999999999999985 23888 899999999999999999999999988774 348888999999999
Q ss_pred ccchhcccc-------ChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHH
Q 000223 486 ALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERI 558 (1833)
Q Consensus 486 ~Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerI 558 (1833)
|++..+++. +...+..+-..|...+..+|+.|...|++||++.+.|+..+++||.+.+|++++--++-+|.|+
T Consensus 240 P~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrl 319 (537)
T KOG0362|consen 240 PFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRL 319 (537)
T ss_pred CCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHH
Confidence 999988764 3566777778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEccccccCCCCCCceeeEEEEEEeeccccccCCCCccccceEEEEe-cCCCCCceEEEecCCCHHHHHHHHHH
Q 000223 559 ARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVE-GCPKPLGCTILLKGANGDNLKKAKHV 637 (1833)
Q Consensus 559 Ar~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~ktl~~fe-gc~~~~g~TIlLRG~s~~~L~evKr~ 637 (1833)
+|..||++.+.+.....+.||+|+.+...++++ .+++.|. +|......||+|||++...|++++|+
T Consensus 320 crtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERA 386 (537)
T KOG0362|consen 320 CRTVGATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAERA 386 (537)
T ss_pred HHHcCCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHHHH
Confidence 999999999999999999999999999999876 2455554 55567889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEeCCCccCCCCC
Q 000223 638 VQYGVFAAYHLALETSFLADEGASLPQLP 666 (1833)
Q Consensus 638 l~dal~a~~~l~lE~~~l~GgGa~~~~~~ 666 (1833)
+++++++.+.+..++++++|.||+++++.
T Consensus 387 VddgV~tyK~l~~d~rLlpGagatEieLa 415 (537)
T KOG0362|consen 387 VDDGVNTYKALCSDSRLLPGAGATEIELA 415 (537)
T ss_pred HHHhHHHhhhhccCCccccCCchhHHHHH
Confidence 99999999999999999999999998643
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-27 Score=267.72 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=189.6
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHHHHHHHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEA 421 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~~~w~~~l~~L~~eA 421 (1833)
-+|+++||||| .+++||+.++.++..++..|+||..|.+||..+...++..+++++-+..
T Consensus 84 sqd~eIgdGtT---gVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e----------------- 143 (400)
T KOG0357|consen 84 SQDDEIGDGTT---GVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE----------------- 143 (400)
T ss_pred cchhhhccCCc---ccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-----------------
Confidence 45679999999 9999999999999999999999999999999999998888887752110
Q ss_pred HhhcccCCCCCCCCCCCCcEEEEEecCCCcceeeEEEeeeEeeecccCCCceeecCCeEEEeccccchhccccChhhHHH
Q 000223 422 ATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHLSSVDT 501 (1833)
Q Consensus 422 ~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vI~GvVf~K~~a~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~ 501 (1833)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEccccccCCCCCCcee
Q 000223 502 LLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYC 581 (1833)
Q Consensus 502 il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C 581 (1833)
+..+++.|+..|++|++|+++.++.|.++|.+++..+|++|...+||-||.+||++||+++.+|++.+||+|
T Consensus 144 --------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~a 215 (400)
T KOG0357|consen 144 --------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFA 215 (400)
T ss_pred --------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhcccc
Confidence 344566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeccccccCCCCccccceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCcc
Q 000223 582 DTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGAS 661 (1833)
Q Consensus 582 ~~f~v~~~~~e~~~~~~~~~~~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~ 661 (1833)
+.++...|+.. .++++++|.|++++.+||.+||+|..+++|.||+++||+|+++|++++.++|.|||++
T Consensus 216 glVrE~sfgtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaa 284 (400)
T KOG0357|consen 216 GLVREISFGTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 284 (400)
T ss_pred ceEEEEecccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchH
Confidence 99999999873 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 000223 662 LPQ 664 (1833)
Q Consensus 662 ~~~ 664 (1833)
++.
T Consensus 285 Eis 287 (400)
T KOG0357|consen 285 EIS 287 (400)
T ss_pred Hhh
Confidence 974
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.8e-20 Score=221.82 Aligned_cols=284 Identities=15% Similarity=0.136 Sum_probs=227.1
Q ss_pred cccCCCCCccccccceeeehHHHHHhHhhhhhhcchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc---------hhhHH
Q 000223 342 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 412 (1833)
Q Consensus 342 ~~ddevGDGTT~~~s~vvLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~l~~is~~~~~~~---------~~w~~ 412 (1833)
..|+.+||||| ++++||.++..++...+..|.+|..|.+|...+.......+...+.+..... .+.+.
T Consensus 93 ~tN~~agdGtt---tatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~ 169 (550)
T KOG0356|consen 93 NTNEEAGDGTT---TATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDK 169 (550)
T ss_pred hccCccccCcc---hHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcH
Confidence 45889999999 9999999999999999999999999999999999999999998887755332 36777
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCcEEEEEecCCCccee-eEEEeeeEeeecccC-------CCceeecCCeEEEec
Q 000223 413 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHR-------RMTSKIDKPRFLILG 484 (1833)
Q Consensus 413 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vI~GvVf~K~~a~k-------~M~~~i~nprILLl~ 484 (1833)
.+.+|+.+|+..|+++ +.|.|+. |.+..|. ++++|+-|++++.++ .+..+++||++||..
T Consensus 170 ~ig~li~~a~~kvG~~----------GVItv~~--gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~ 237 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGRK----------GVITVKD--GKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE 237 (550)
T ss_pred HHHHHHHHHHHHhCcC----------CeEEeec--CCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh
Confidence 8888999999999975 5677766 7776654 899999999999975 567789999999887
Q ss_pred cccchhccccChhhHHHHHHHHHHHHHHHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeec-----------ChH
Q 000223 485 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI-----------KRP 553 (1833)
Q Consensus 485 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nV-----------k~~ 553 (1833)
+....+.++-+.++ .-.+.+.++|++.++|+..|+..|.-++..+...| ++.
T Consensus 238 ------kki~~v~~ivp~LE-----------~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~ 300 (550)
T KOG0356|consen 238 ------KKISSVQSIVPALE-----------LALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKN 300 (550)
T ss_pred ------hhhhHHHHHhHHHH-----------HhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHH
Confidence 44444555555444 56677889999999999999999988886655444 778
Q ss_pred HHHHHHHHhCCEEcc------ccccCCCCCCceeeEEEEEEeeccccccCCCCccc------------------------
Q 000223 554 LLERIARCTGAQIVP------SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL------------------------ 603 (1833)
Q Consensus 554 ~LerIAr~TGA~Iis------sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~------------------------ 603 (1833)
.|.+||.+|||.++. +++.....+||+|+.+.+.+-.. ....+ .+.+.
T Consensus 301 ~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g-~~~~~~v~~rIeqik~~~e~t~~~ye~ek 378 (550)
T KOG0356|consen 301 LLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKG-KGNKAQVEGRIEQIKEMIEETTSDYEKEK 378 (550)
T ss_pred hhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcc-eeeCC-CCCHHHHHHHHHHHHHHHHhhhhhhhHhH
Confidence 899999999999886 35566778999999999987211 11111 11110
Q ss_pred -cceEEEEecCCCCCceEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000223 604 -SKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 664 (1833)
Q Consensus 604 -~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 664 (1833)
.+.+-.|. ...++|.++|.++.|+++.|.+++||++|.++++.|| ++||||+++..
T Consensus 379 l~er~a~ls----~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~ 435 (550)
T KOG0356|consen 379 LNERLAKLS----GGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLR 435 (550)
T ss_pred HHHHHHHhc----CCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHH
Confidence 11111111 2468899999999999999999999999999999999 99999999864
No 52
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.55 E-value=1.3e-15 Score=142.68 Aligned_cols=68 Identities=35% Similarity=0.973 Sum_probs=47.3
Q ss_pred CCcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHh
Q 000223 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWE 102 (1833)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1833)
|.|+||.++..|..|+++|++++||||||.||++||+.|+.+++.+|... ....+++|||+.|+..++
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~----~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPS----SGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--G----GTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccc----cCCCCcCEECHHHHHHhc
Confidence 67999999999999999999999999999999999999999998887211 113689999999999875
No 53
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.34 E-value=1.9e-13 Score=159.15 Aligned_cols=73 Identities=40% Similarity=0.894 Sum_probs=67.7
Q ss_pred CCCCCCCCCcccCCCccccccccc-ccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHh
Q 000223 24 EPANVSRDFWMPDQSCRVCYECDS-QFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWE 102 (1833)
Q Consensus 24 ~p~~~~r~~Wvpd~~~~~C~~C~~-~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1833)
.|.....+.|+||.++..|+.|.. .|+++.||||||+||.|||..|+.++..+|... ..++|||+.||..+.
T Consensus 153 ~~~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-------~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 153 SPSNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-------TKPIRVCDICFEELE 225 (288)
T ss_pred CCCCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-------CCCceecHHHHHHHh
Confidence 366788899999999999999999 999999999999999999999999998888766 689999999999997
Q ss_pred h
Q 000223 103 Q 103 (1833)
Q Consensus 103 ~ 103 (1833)
.
T Consensus 226 ~ 226 (288)
T KOG1729|consen 226 K 226 (288)
T ss_pred c
Confidence 6
No 55
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.33 E-value=5.8e-13 Score=162.48 Aligned_cols=77 Identities=29% Similarity=0.717 Sum_probs=59.4
Q ss_pred CCCCCcccCCCc-ccccccccccccc-----cccccccccCcEEecCCCCCeeeCCCCCCcCC--CCCCcccccccchHH
Q 000223 28 VSRDFWMPDQSC-RVCYECDSQFTVF-----NRRHHCRLCGLVFCAKCTTNSVPASFDESRTG--REDSERIRVCNYCFR 99 (1833)
Q Consensus 28 ~~r~~Wvpd~~~-~~C~~C~~~Fs~~-----~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~--~~~~~~vRVC~~C~~ 99 (1833)
+..|.|+||++. ..|+.|++.|+.+ .||||||+||++||+.||+++..+|......+ .....++|||+.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 566899999985 7899999999754 69999999999999999999876544322111 122357899999998
Q ss_pred HHhhc
Q 000223 100 QWEQG 104 (1833)
Q Consensus 100 ~~~~~ 104 (1833)
+++..
T Consensus 528 q~EnL 532 (1374)
T PTZ00303 528 EYETV 532 (1374)
T ss_pred HHHhH
Confidence 87543
No 56
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.32 E-value=3.8e-13 Score=157.51 Aligned_cols=70 Identities=39% Similarity=0.897 Sum_probs=63.9
Q ss_pred CCCCCCCCcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCccccccc-----chHH
Q 000223 25 PANVSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCN-----YCFR 99 (1833)
Q Consensus 25 p~~~~r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~-----~C~~ 99 (1833)
...+++|-|+||..+..|+.|+.+|+.|+||||||+||+|||++|+-..+|+|..| -.+.+|||. .||.
T Consensus 887 satlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~g------l~ka~rvcrpqsnldc~~ 960 (990)
T KOG1819|consen 887 SATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHG------LDKAPRVCRPQSNLDCLT 960 (990)
T ss_pred ccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccc------cccCceecCCccccccee
Confidence 34577899999999999999999999999999999999999999999999999988 357999999 7876
Q ss_pred H
Q 000223 100 Q 100 (1833)
Q Consensus 100 ~ 100 (1833)
.
T Consensus 961 r 961 (990)
T KOG1819|consen 961 R 961 (990)
T ss_pred e
Confidence 5
No 57
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.3e-12 Score=160.70 Aligned_cols=66 Identities=32% Similarity=0.835 Sum_probs=60.1
Q ss_pred CCCcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhc
Q 000223 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQG 104 (1833)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~ 104 (1833)
.+.|....+ |..|..+|++++||||||+||+|||..|+++..++|..| ..++||||+.||..+...
T Consensus 159 ~pdW~D~~~---C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~G------i~~~VRVCd~C~E~l~~~ 224 (634)
T KOG1818|consen 159 APDWIDSEE---CLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLG------IEKPVRVCDSCYELLTRA 224 (634)
T ss_pred Ccccccccc---cceeeeeeeeccccccccccchhhccCccccccCccccc------ccccceehhhhHHHhhhc
Confidence 478987654 999999999999999999999999999999999999988 578999999999998664
No 58
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.97 E-value=1.9e-10 Score=103.82 Aligned_cols=55 Identities=40% Similarity=1.025 Sum_probs=49.1
Q ss_pred cccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHH
Q 000223 39 CRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFR 99 (1833)
Q Consensus 39 ~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~ 99 (1833)
+..|..|++.|+++.||||||.||++||..|+.+++.+|... ..+++|||..||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~------~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMG------GGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCccc------CCCccEeChHHhC
Confidence 467999999999999999999999999999999998887632 2589999999985
No 59
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.80 E-value=5.5e-10 Score=132.15 Aligned_cols=73 Identities=32% Similarity=0.752 Sum_probs=54.5
Q ss_pred CcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCC-------C---C---CcC----CCCCCcccccc
Q 000223 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASF-------D---E---SRT----GREDSERIRVC 94 (1833)
Q Consensus 32 ~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~-------~---~---~~~----~~~~~~~vRVC 94 (1833)
.|+.|.++..|+.|..+|++++||||||.||+|.|.+|+.. ++++- . . +.. -.....++|+|
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~-iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF-ISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh-cChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 49999999999999999999999999999999999999865 11000 0 0 000 01123579999
Q ss_pred cchHHHHhhcc
Q 000223 95 NYCFRQWEQGI 105 (1833)
Q Consensus 95 ~~C~~~~~~~~ 105 (1833)
..|...+-...
T Consensus 252 ~hCl~~L~~R~ 262 (505)
T KOG1842|consen 252 MHCLDNLFRRK 262 (505)
T ss_pred HHHHHHHHHHH
Confidence 99988776543
No 60
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.71 E-value=6.3e-09 Score=133.96 Aligned_cols=53 Identities=34% Similarity=0.851 Sum_probs=47.6
Q ss_pred CCCCCCcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCC
Q 000223 27 NVSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFD 79 (1833)
Q Consensus 27 ~~~r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~ 79 (1833)
+...|.|+||.++..|+.|..+|++.+||||||+||+|+|+-|+..+..+-..
T Consensus 545 gkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl 597 (1287)
T KOG1841|consen 545 GKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL 597 (1287)
T ss_pred CCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc
Confidence 35568999999999999999999999999999999999999999987665443
No 61
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2e-07 Score=109.91 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCCcccCCCcccccccccccc-cccccccccccCcEEecCCCCCe--eeCCCCCCcCCCCCCcccccccchHHHHh
Q 000223 30 RDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVFCAKCTTNS--VPASFDESRTGREDSERIRVCNYCFRQWE 102 (1833)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~VfC~~Cs~~~--v~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1833)
.|.|.+++....|+.|+..|+ ++.||||||.||.+||..|+.-+ +|+|... ..+.|||+.|+..+.
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~-------d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAA-------DPLQRVLDSCAFNLE 219 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCccc-------CCHHHHHhhHhhccC
Confidence 489999999999999999999 77899999999999999999875 4444433 579999999999874
No 62
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.96 E-value=3e-06 Score=98.69 Aligned_cols=71 Identities=30% Similarity=0.665 Sum_probs=57.8
Q ss_pred CCCCCCcccCCCcccccccccccc-----------cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCccccccc
Q 000223 27 NVSRDFWMPDQSCRVCYECDSQFT-----------VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCN 95 (1833)
Q Consensus 27 ~~~r~~Wvpd~~~~~C~~C~~~Fs-----------~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~ 95 (1833)
...-|.|..+.. |..|..+|. +-.|.||||.||..||..|++++...|.-| ..-.+|+|+
T Consensus 273 r~etpewl~s~~---cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg------~e~~vR~~~ 343 (404)
T KOG1409|consen 273 RVETPEWLDSDS---CQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG------FEFSVRVCD 343 (404)
T ss_pred eecCccccccch---hhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc------ceeEEEEec
Confidence 345589998875 788889883 223899999999999999999998888777 467999999
Q ss_pred chHHHHhhccc
Q 000223 96 YCFRQWEQGIG 106 (1833)
Q Consensus 96 ~C~~~~~~~~~ 106 (1833)
.||..+.-..+
T Consensus 344 ~c~~~i~~~~~ 354 (404)
T KOG1409|consen 344 SCYPTIKDEER 354 (404)
T ss_pred ccchhhhcCCC
Confidence 99998765433
No 63
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=97.45 E-value=8.5e-05 Score=92.07 Aligned_cols=61 Identities=31% Similarity=0.626 Sum_probs=52.2
Q ss_pred CCcccCCCcccccccccccc-cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHH
Q 000223 31 DFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1833)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1833)
+.| +.+...|..|+.+|+ .+.|||||+.||.|+|++|+.....+...+ ....|||..||..
T Consensus 409 ~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~-------s~ssrv~~~~~~~ 470 (623)
T KOG4424|consen 409 PRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDN-------SRSSRVCMDRYLT 470 (623)
T ss_pred ccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccc-------cchhhhhhhhccC
Confidence 466 888999999999998 778999999999999999998876554333 5789999999865
No 64
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.21 E-value=3.6e-05 Score=94.16 Aligned_cols=68 Identities=29% Similarity=0.582 Sum_probs=53.7
Q ss_pred CCCCCcccCC----Ccccccc-cccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHH
Q 000223 28 VSRDFWMPDQ----SCRVCYE-CDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQW 101 (1833)
Q Consensus 28 ~~r~~Wvpd~----~~~~C~~-C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~ 101 (1833)
..+.+|+|+. .-.-|+. |+..|..++||||||.||...|+.|..++.....-+ +..+.++|+.|+.+.
T Consensus 311 ~al~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g------se~~Adg~Dq~psvs 383 (1141)
T KOG1811|consen 311 PALHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG------SENPADGCDQCPSVS 383 (1141)
T ss_pred chhhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc------ccCcccccccccchh
Confidence 3456899998 3356765 577899999999999999999999998876554433 356999999998663
No 65
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=94.07 E-value=0.045 Score=75.11 Aligned_cols=99 Identities=8% Similarity=-0.195 Sum_probs=78.2
Q ss_pred CCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEeccchhhcccHHHHHh
Q 000223 922 CRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVVMSDAAWGLSFGKFLE 1001 (1833)
Q Consensus 922 C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~mS~~tw~lSFGKfLE 1001 (1833)
|..|+.||..|++.+.|..- .+ .-+.. ...++|+. ..|.||++|..|+. -+-+ +|...+|++.+|+++|
T Consensus 659 ~~~~~~~~~~~lv~~~es~~-~~-~~~s~-~~~~~~l~-e~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~~e 727 (1598)
T KOG0230|consen 659 SSYSKGPKQNGLVPAHESVL-ND-LHEST-LSILSKLP-ETRSGTHEGNEDKG------PGLE-PELANNQNIQRPEETE 727 (1598)
T ss_pred hhhcCchhhccccccccccc-cc-ccccc-cccccccc-chhcccchhccccC------cccc-ccccccccccchhhhh
Confidence 44689999999999999877 22 22222 23466665 48999999999996 3556 8999999999999999
Q ss_pred hhccCccccCCccCCCCccccceeeecccCCEE
Q 000223 1002 LSFSNHAAASRVANCGHSLHRDCLRFYGFGQMV 1034 (1833)
Q Consensus 1002 L~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~v 1034 (1833)
-. +...+.+...|.|.+---|.|+| +.++|
T Consensus 728 ~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 728 EQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 98 44556677889999999999999 88876
No 66
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=93.62 E-value=0.035 Score=58.11 Aligned_cols=52 Identities=33% Similarity=0.673 Sum_probs=40.9
Q ss_pred cccccccccccccc-cccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000223 39 CRVCYECDSQFTVF-NRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1833)
Q Consensus 39 ~~~C~~C~~~Fs~~-~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1833)
...|..|..+|+++ ++.+-|..|+.-||.+|... . ...+..+|..|+.....
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~----------~~~~~WlC~vC~k~rel 106 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---S----------KKEPIWLCKVCQKQREL 106 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---T----------SSSCCEEEHHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc---C----------CCCCCEEChhhHHHHHH
Confidence 35899999999955 79999999999999999755 1 14678999999987543
No 67
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=87.65 E-value=0.13 Score=61.55 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=52.7
Q ss_pred CCcccCCCcccccccccccccccccccccccCcEEecCCCC-CeeeCCCCCCcCCCCCCcccccccchHHH
Q 000223 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTT-NSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1833)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~-~~v~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1833)
..|+-+.+...|..|...|.+..|.|||+.||+|+|..|+- +....+ .............+.|..|...
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~-~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKK-LQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcc-cccccccccccchhhcccccCH
Confidence 56999999999999999999999999999999999999987 221111 1111222345678889988876
No 68
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=82.72 E-value=1.4 Score=59.76 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=45.1
Q ss_pred CCCcccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000223 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1833)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1833)
++.|.+|..+..|..|.+.|..++|||||| |.++ +-.. .....|+|..|...++.
T Consensus 648 ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~-------s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 648 KSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYS-------SRKEARPCNITHSVLRN 702 (1287)
T ss_pred cceeccCCcCCCceecccceeeeccccccc--cccc----------cccc-------ccccCCCCcccCccchh
Confidence 368999999999999999999999999999 7776 1111 24678999999888765
No 69
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.85 E-value=0.12 Score=62.25 Aligned_cols=68 Identities=21% Similarity=0.486 Sum_probs=55.1
Q ss_pred CcccCCCcccccccccccccccccccccc--cCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhcccC
Q 000223 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRL--CGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQGIGA 107 (1833)
Q Consensus 32 ~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~--CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~~~~ 107 (1833)
.|.-+..+..|..|..+|..++-+-||-+ ||++||-.|+.-.+| ... +.++..||..|.....+..-.
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp--~l~------~e~~akv~rlq~eL~~seq~~ 530 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVP--SLP------NERPAKVCRLQHELLNSEQKP 530 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhcc--ccc------ccchHHHHHHHHHHhhhccCC
Confidence 37777788899999999999999999988 999999999866543 322 357999999999987765433
No 70
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=61.15 E-value=3.9 Score=44.98 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=10.6
Q ss_pred HHHHHHHhhhhhhhHHHH
Q 000223 1151 RLRRQILFHSCVWDQRLI 1168 (1833)
Q Consensus 1151 ~l~r~l~~~~~~Wd~rl~ 1168 (1833)
.+.+.|......|-.||.
T Consensus 111 iVE~~L~~~~~~ay~rfa 128 (154)
T PRK00464 111 LVMEELKKLDEVAYVRFA 128 (154)
T ss_pred HHHHHHHhcCCEEEEEhh
Confidence 344555556666666665
No 71
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=58.62 E-value=2.3 Score=38.09 Aligned_cols=30 Identities=30% Similarity=0.815 Sum_probs=19.7
Q ss_pred cccccccccccc------cccccccccCcEEecCCC
Q 000223 41 VCYECDSQFTVF------NRRHHCRLCGLVFCAKCT 70 (1833)
Q Consensus 41 ~C~~C~~~Fs~~------~RkHHCR~CG~VfC~~Cs 70 (1833)
.|+.|.++|... ..++.|..|+.+||..|=
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 489999999865 368999999999999993
No 72
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=57.54 E-value=2.9 Score=46.91 Aligned_cols=35 Identities=34% Similarity=0.731 Sum_probs=27.1
Q ss_pred cCCCcccccccccccccc---c---------ccccccccCcEEecCC
Q 000223 35 PDQSCRVCYECDSQFTVF---N---------RRHHCRLCGLVFCAKC 69 (1833)
Q Consensus 35 pd~~~~~C~~C~~~Fs~~---~---------RkHHCR~CG~VfC~~C 69 (1833)
+|...-.|.+|++.|++- + +||-|+.||+.|=..-
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtf 159 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTF 159 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchh
Confidence 456667899999999843 3 5899999999985543
No 73
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.52 E-value=7.2 Score=40.44 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCCcccCCCccccccccccccccc-ccccccccCcEE
Q 000223 30 RDFWMPDQSCRVCYECDSQFTVFN-RRHHCRLCGLVF 65 (1833)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~-RkHHCR~CG~Vf 65 (1833)
++.|-.. ..|+.|+++|==++ +--+|..||..|
T Consensus 3 kpelGtK---R~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 3 KPELGTK---RTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccccCCc---ccCCCCcchhccCCCCCccCCCCCCcc
Confidence 4667544 36999999998554 455588888765
No 74
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.82 E-value=7.8 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCCcccCCCcccccccccccc-cccccccccccCcEE
Q 000223 30 RDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVF 65 (1833)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~Vf 65 (1833)
++.|-.. ..|+.|+++|= +.++--+|..||.+|
T Consensus 3 k~elGtK---r~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 3 KPDLGTK---RICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred chhhCcc---ccCCCcCccccccCCCCccCCCcCCcc
Confidence 4567543 36999999998 556677888888864
No 75
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.04 E-value=10 Score=39.50 Aligned_cols=34 Identities=32% Similarity=0.895 Sum_probs=27.2
Q ss_pred Ccccccccccccccc----------cccccccccCcEEecCCCC
Q 000223 38 SCRVCYECDSQFTVF----------NRRHHCRLCGLVFCAKCTT 71 (1833)
Q Consensus 38 ~~~~C~~C~~~Fs~~----------~RkHHCR~CG~VfC~~Cs~ 71 (1833)
....|+.|..+|.-. ..|.-|..|+.+||-.|=.
T Consensus 54 ~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~ 97 (112)
T TIGR00622 54 GSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV 97 (112)
T ss_pred CCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccch
Confidence 345699999999732 3478899999999999953
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.52 E-value=2.8 Score=49.29 Aligned_cols=52 Identities=27% Similarity=0.640 Sum_probs=43.7
Q ss_pred ccCCCcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHH
Q 000223 34 MPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1833)
Q Consensus 34 vpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1833)
-+.....+|-.|+..|..+.+||-|-.|-+-||..||.. ....|.|..|...
T Consensus 39 s~~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v---------------~~~lr~c~~c~r~ 90 (350)
T KOG4275|consen 39 SSSSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRV---------------SISLRTCTSCRRV 90 (350)
T ss_pred CcccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHh---------------cccchhhhHHHHH
Confidence 344556689999999999999999999999999999822 2467889999776
No 77
>PLN02667 inositol polyphosphate multikinase
Probab=46.73 E-value=35 Score=41.46 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCcceeEEEecCCcEEEeccC-----HHHHHHHHHHhHH--HHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEE
Q 000223 1578 GKSNVFFAKTLDDRFIIKQVP-----KTELESFIKFGPA--YFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKM 1650 (1833)
Q Consensus 1578 GKSgs~F~~T~D~rfiiKti~-----~~E~~~f~~~~p~--Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~ 1650 (1833)
||-| ++. .|+..|+|-+. ..|+++...+... .-.. ..-+++++||...+... .|+
T Consensus 17 ~~~g--~L~-~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~---~~~---- 78 (286)
T PLN02667 17 GKLG--PLV-DDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEAS---DGS---- 78 (286)
T ss_pred CCcc--ceE-cCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccC---CCc----
Confidence 4445 333 47778899997 7888776654310 0011 12578999999877542 243
Q ss_pred EEEEeecccCCCccceeeeCC
Q 000223 1651 DLLVMENLLFRRNITRLYDLK 1671 (1833)
Q Consensus 1651 ~~iVMeNlf~~~~i~~~yDLK 1671 (1833)
.+||||||-++..--.+=|||
T Consensus 79 ~~i~LeDLt~g~~~PcVlDlK 99 (286)
T PLN02667 79 GLLVLEDLLAGYTKPCVMDVK 99 (286)
T ss_pred eeEEehHHhcCCCCCeEEEEE
Confidence 379999999875433344444
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=45.58 E-value=2.9 Score=55.36 Aligned_cols=43 Identities=30% Similarity=0.753 Sum_probs=31.8
Q ss_pred Ccccccccccccc--cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHH
Q 000223 38 SCRVCYECDSQFT--VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFR 99 (1833)
Q Consensus 38 ~~~~C~~C~~~Fs--~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~ 99 (1833)
+.-.|..|...+- ++ -.||.+||..|...+. ..+.|-|..|-.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI------~kC~H~FC~~Cvq~r~-------------etRqRKCP~Cn~ 686 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVI------TKCGHVFCEECVQTRY-------------ETRQRKCPKCNA 686 (698)
T ss_pred hceeCCCccCchhhHHH------HhcchHHHHHHHHHHH-------------HHhcCCCCCCCC
Confidence 4567999987653 22 3799999999986653 367889999943
No 79
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=45.56 E-value=9.5 Score=40.52 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=18.5
Q ss_pred cCccccceeEeeeccceeEeeehhhhhhc
Q 000223 1727 IDVMDYSLLVGIDEEKHELVLGIIDFMRQ 1755 (1833)
Q Consensus 1727 ~niMDYSLLvGi~~~~~~l~~GIID~L~~ 1755 (1833)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 4588899999976 999999954
No 80
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=44.81 E-value=10 Score=40.24 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=18.6
Q ss_pred cCccccceeEeeeccceeEeeehhhhhhc
Q 000223 1727 IDVMDYSLLVGIDEEKHELVLGIIDFMRQ 1755 (1833)
Q Consensus 1727 ~niMDYSLLvGi~~~~~~l~~GIID~L~~ 1755 (1833)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 4588899999976 899999954
No 81
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.86 E-value=12 Score=31.28 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=19.1
Q ss_pred cccccccccccccc-------ccccccccCcEE
Q 000223 40 RVCYECDSQFTVFN-------RRHHCRLCGLVF 65 (1833)
Q Consensus 40 ~~C~~C~~~Fs~~~-------RkHHCR~CG~Vf 65 (1833)
..|..|+..|.+-. ++..|..||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 46999999997543 467777777765
No 82
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=43.43 E-value=12 Score=31.13 Aligned_cols=25 Identities=32% Similarity=0.958 Sum_probs=17.9
Q ss_pred ccccccccccccc-------ccccccccCcEE
Q 000223 41 VCYECDSQFTVFN-------RRHHCRLCGLVF 65 (1833)
Q Consensus 41 ~C~~C~~~Fs~~~-------RkHHCR~CG~Vf 65 (1833)
.|..|++.|.+-. ++--|..||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 5888888886443 566777777765
No 83
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=42.63 E-value=65 Score=31.73 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=34.6
Q ss_pred HHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHH
Q 000223 516 KIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIAR 560 (1833)
Q Consensus 516 rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr 560 (1833)
.|...++++||| +.|...+...|.++||.++.......=+.|..
T Consensus 48 ~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 48 FLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp HHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred HHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 555689999999 56899999999999999999855554444443
No 84
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=42.43 E-value=22 Score=35.23 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=30.6
Q ss_pred cccccCCCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEec
Q 000223 916 FDQSYRCRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVVM 987 (1833)
Q Consensus 916 ~~~~~~C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~m 987 (1833)
..+.|.||+|+.+- |++.. -.|| .|.+|+....-..-||.+++
T Consensus 32 ~~~~~~Cp~C~~~~-----------------VkR~a---------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRTT-----------------VKRIA---------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCcc-----------------eeeec---------cCeE---EcCCCCCeeccccccccchH
Confidence 46789999999984 56652 1488 59999987555556665554
No 85
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=3.8 Score=45.40 Aligned_cols=49 Identities=20% Similarity=0.511 Sum_probs=33.4
Q ss_pred CcccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHh
Q 000223 38 SCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWE 102 (1833)
Q Consensus 38 ~~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1833)
.+-.|.+|-..|+-- -----.||.|||..|....+ +..++|..|..++.
T Consensus 130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~al--------------k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDAL--------------KNTNKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecchhhc--cccccccchhHHHHHHHHHH--------------HhCCCCCCcccccc
Confidence 346788888877511 11335899999999975432 46778999987543
No 86
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=40.35 E-value=15 Score=31.24 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=19.8
Q ss_pred ccccccccccccccccccccCcEEecCC
Q 000223 42 CYECDSQFTVFNRRHHCRLCGLVFCAKC 69 (1833)
Q Consensus 42 C~~C~~~Fs~~~RkHHCR~CG~VfC~~C 69 (1833)
|..|++.-.++ ...|+.||.+||.+.
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccccc--CeECCccCCcccccc
Confidence 66787765444 578999999998765
No 87
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=40.01 E-value=66 Score=35.87 Aligned_cols=52 Identities=31% Similarity=0.348 Sum_probs=37.1
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeE-EeecC--h----HHHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISL-VLNIK--R----PLLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~v-v~nVk--~----~~LerIAr~TGA~ 565 (1833)
+++|++++|+|||..........+.|.+.||.+ +.... . ..++.+++.+|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 447888999999997666665778899999965 44332 1 3467788888753
No 88
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.90 E-value=1e+02 Score=32.84 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=55.4
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHhhcc-------------c--ccCc-cCCCCcce----eEEEecCCcEEE-------
Q 000223 1542 TCYFAKRFDALRRMCCHSELDFIRSLSR-------------C--KKWG-AQGGKSNV----FFAKTLDDRFII------- 1594 (1833)
Q Consensus 1542 ~~y~p~~F~~LR~~~~~~~~~f~~Sl~~-------------~--~~~~-~~gGKSgs----~F~~T~D~rfii------- 1594 (1833)
.+|-...|..+-+..++++.++...+.. + .+|. ...||||. .||+..+.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 3566789999999999998887665542 1 2332 35789984 455555555544
Q ss_pred -eccCHHHHHHHHHHhHHHHHHHHhh
Q 000223 1595 -KQVPKTELESFIKFGPAYFKYLSES 1619 (1833)
Q Consensus 1595 -Kti~~~E~~~f~~~~p~Yf~y~~~~ 1619 (1833)
-.|+..|++.|.+++..|+.+-.+-
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~ 107 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQ 107 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 2468999999999999999886653
No 89
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=36.55 E-value=66 Score=38.83 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEee-c-----ChHHHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLN-I-----KRPLLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~n-V-----k~~~LerIAr~TGA~ 565 (1833)
+++|++++|+|||+....+....+.|.+.||.++.- . -...++.|++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 458899999999998888888889999999988632 2 123478888888864
No 90
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=35.44 E-value=75 Score=39.88 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecCh-------HHHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKR-------PLLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~-------~~LerIAr~TGA~ 565 (1833)
+++|++++|+|||....-.....+.|.+.||.++.--.. +.++.|++.+|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 568999999999997655666788899999998654211 3456777777753
No 91
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=35.18 E-value=17 Score=43.34 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=31.9
Q ss_pred cccCCCcccccccccccc----------cccccccccccCcEEecCCC
Q 000223 33 WMPDQSCRVCYECDSQFT----------VFNRRHHCRLCGLVFCAKCT 70 (1833)
Q Consensus 33 Wvpd~~~~~C~~C~~~Fs----------~~~RkHHCR~CG~VfC~~Cs 70 (1833)
|-.+-....|+.|+.+|- ....|+.|..|-.-||..|-
T Consensus 356 ~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCd 403 (421)
T COG5151 356 EGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCD 403 (421)
T ss_pred CCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhH
Confidence 666777789999999883 34579999999999999994
No 92
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.63 E-value=88 Score=36.40 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHccCCcEEEEcCCcCHHH-HHHHHHcCCeEEeec--C----hHHHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYA-QDYLLAKDISLVLNI--K----RPLLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~A-l~~L~~~gI~vv~nV--k----~~~LerIAr~TGA~ 565 (1833)
+++|++++|+|||......... .+.|.+.||.++..- . ...++.||..+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 4578899999999976554544 888999999876532 1 33478888888875
No 93
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=32.98 E-value=20 Score=34.16 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=36.9
Q ss_pred cccccccccccccccccccccCcEEecCCCCCe-eeCCCCCCcCCC---CCCcccccccchHHHH
Q 000223 41 VCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNS-VPASFDESRTGR---EDSERIRVCNYCFRQW 101 (1833)
Q Consensus 41 ~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~-v~~p~~~~~~~~---~~~~~vRVC~~C~~~~ 101 (1833)
.|+.|...=.-..----|..||..+|...+... +++-..+.+.+. ...-+.-+|..|+..+
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~ 66 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKREEIPVWEGGYPFPSKKLKKPLPRILCPECHAAL 66 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhhhheeeeccCCCCccccccCCCCeeecHHHHHHh
Confidence 466666543333444679999999999998762 333322222211 1234666899999765
No 94
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=32.53 E-value=91 Score=31.25 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecC
Q 000223 513 AVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 551 (1833)
Q Consensus 513 ~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk 551 (1833)
+++.|...++++|+|. ++...+++.|.++||.++.-..
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 3446667899999995 6999999999999999997776
No 95
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=32.31 E-value=31 Score=31.49 Aligned_cols=34 Identities=29% Similarity=0.631 Sum_probs=20.9
Q ss_pred cccccc--ccccccccccc----ccccccCcEEecCCCCC
Q 000223 39 CRVCYE--CDSQFTVFNRR----HHCRLCGLVFCAKCTTN 72 (1833)
Q Consensus 39 ~~~C~~--C~~~Fs~~~Rk----HHCR~CG~VfC~~Cs~~ 72 (1833)
...|.. |...|..-... -.|..||..||..|-..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 346866 99988754432 67999999999999643
No 96
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=31.41 E-value=77 Score=37.26 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=28.0
Q ss_pred cccCCCccccccccccccccc-------ccccccccCcEEecC
Q 000223 33 WMPDQSCRVCYECDSQFTVFN-------RRHHCRLCGLVFCAK 68 (1833)
Q Consensus 33 Wvpd~~~~~C~~C~~~Fs~~~-------RkHHCR~CG~VfC~~ 68 (1833)
|-.-.+++.|..|++.|-..- -..||..||..|=+.
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccchhh
Confidence 455678899999999986442 478999999998443
No 97
>PHA02768 hypothetical protein; Provisional
Probab=29.98 E-value=23 Score=32.47 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=17.2
Q ss_pred ccccccccccccc------cccc----ccccCcEE
Q 000223 41 VCYECDSQFTVFN------RRHH----CRLCGLVF 65 (1833)
Q Consensus 41 ~C~~C~~~Fs~~~------RkHH----CR~CG~Vf 65 (1833)
.|..|++.|+... |+|+ |-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 6999999997332 4444 66677665
No 98
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.78 E-value=15 Score=46.82 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=37.9
Q ss_pred ccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000223 40 RVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1833)
Q Consensus 40 ~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1833)
..|++|-.++.+-.|- .||.+||..|.-+.+..+ .+...+-|.-|+..+..
T Consensus 187 ~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---------~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---------AIKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---------cccCCccCCchhhhccc
Confidence 5799999888744332 499999999987755443 24677889999988644
No 99
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=29.67 E-value=1.4e+02 Score=31.87 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCC
Q 000223 513 AVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGA 564 (1833)
Q Consensus 513 ~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA 564 (1833)
+.+.|+..|+++||+ ..|.+-|..+|.++||.+..-....+=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 345788899999999 689999999999999999988876555555555444
No 100
>PRK00420 hypothetical protein; Validated
Probab=26.63 E-value=37 Score=35.59 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=14.9
Q ss_pred cccccccccccc-ccccccccccCcE
Q 000223 40 RVCYECDSQFTV-FNRRHHCRLCGLV 64 (1833)
Q Consensus 40 ~~C~~C~~~Fs~-~~RkHHCR~CG~V 64 (1833)
.+|+.|+.+|.- -..+.-|..||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 579999987753 3344444444443
No 101
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=26.56 E-value=1.4e+02 Score=29.84 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecC
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 551 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk 551 (1833)
...+...++++||+.+ +...++..|.++||.++.-..
T Consensus 54 ~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 3355668999999975 999999999999999997776
No 102
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=25.74 E-value=1.2e+02 Score=35.47 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeec----ChHHHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI----KRPLLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nV----k~~~LerIAr~TGA~ 565 (1833)
+++|++++|+|||+...... ..+.|.+.|.+++... -...++.|++.+|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 44788999999999877655 6777888886665443 124567777777653
No 103
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=25.11 E-value=32 Score=41.99 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=4.0
Q ss_pred cCCEEEEEEE
Q 000223 1030 FGQMVACFRY 1039 (1833)
Q Consensus 1030 ~~~~va~f~y 1039 (1833)
|=.+|-+++-
T Consensus 142 lf~ivG~ih~ 151 (414)
T KOG1314|consen 142 LFSIVGCIHG 151 (414)
T ss_pred HHHHHhcccc
Confidence 3344444433
No 104
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=24.22 E-value=1.7e+02 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHccCCcEEEEcCCc-CHHHHHHHHHcCCeEEeecC-------hHHHHHHHHHhCCE
Q 000223 515 TKIDAHHPNVLLVEKSV-SRYAQDYLLAKDISLVLNIK-------RPLLERIARCTGAQ 565 (1833)
Q Consensus 515 ~rI~~~~pnVVlvek~V-s~~Al~~L~~~gI~vv~nVk-------~~~LerIAr~TGA~ 565 (1833)
++|++++|+|||..... .......+.+.+|.++.--. ...++.|+.++|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 47888999999999988 78888889999999885443 24578888888875
No 105
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.86 E-value=38 Score=37.42 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=14.9
Q ss_pred ccccccccccccccCcE---EecCCC
Q 000223 48 QFTVFNRRHHCRLCGLV---FCAKCT 70 (1833)
Q Consensus 48 ~Fs~~~RkHHCR~CG~V---fC~~Cs 70 (1833)
+|.....||.|+.||.. ||-.|.
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~ 33 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCR 33 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeec
Confidence 34455667777777753 777774
No 106
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.53 E-value=1.9e+02 Score=35.82 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=44.6
Q ss_pred HHHHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEcc
Q 000223 512 MAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVP 568 (1833)
Q Consensus 512 ~~v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~LerIAr~TGA~Iis 568 (1833)
.+++.|++.+|.+|++..+.... .+.|.++||.++..|..-.+-+.+.-.|++.+-
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 35667788999999999888776 478999999999999776666667777877663
No 107
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.93 E-value=45 Score=29.09 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=18.4
Q ss_pred cccccccccccccc--cccccccCcEE
Q 000223 41 VCYECDSQFTVFNR--RHHCRLCGLVF 65 (1833)
Q Consensus 41 ~C~~C~~~Fs~~~R--kHHCR~CG~Vf 65 (1833)
.|..|+..|.+..+ ..+|..||.-+
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 68999998875544 57888888643
No 108
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=22.73 E-value=51 Score=36.29 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=29.0
Q ss_pred EEEcCHHHH---HHHHHHcCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEec
Q 000223 1541 VTCYFAKRF---DALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQ 1596 (1833)
Q Consensus 1541 ~~~y~p~~F---~~LR~~~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKt 1596 (1833)
++-|||.-= ..|.....+.|-+=+-|+ .-..|+-+++||+|.|+||||=-
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~------GDt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISM------GDTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEE------EETT--EEEEEEETTTTEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeee------cCCCCceEEEEEeccCceEEEEE
Confidence 666777422 356666655554333333 34679999999999999999853
No 109
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=22.32 E-value=42 Score=26.12 Aligned_cols=23 Identities=30% Similarity=0.798 Sum_probs=12.7
Q ss_pred cccccccccccccccccccccCcEE
Q 000223 41 VCYECDSQFTVFNRRHHCRLCGLVF 65 (1833)
Q Consensus 41 ~C~~C~~~Fs~~~RkHHCR~CG~Vf 65 (1833)
.|..|+..-....+ -|.+||..|
T Consensus 2 ~CP~C~~~V~~~~~--~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAK--FCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcC--cCCCCCCCC
Confidence 46666665543322 366666654
No 110
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.16 E-value=34 Score=36.29 Aligned_cols=51 Identities=31% Similarity=0.733 Sum_probs=36.3
Q ss_pred cccccccc-ccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHH
Q 000223 40 RVCYECDS-QFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQW 101 (1833)
Q Consensus 40 ~~C~~C~~-~Fs~~~RkHHCR~CG~VfC~~Cs~~~v~~p~~~~~~~~~~~~~vRVC~~C~~~~ 101 (1833)
..|.+|.+ +|.- .=-|.|..|.--||++|-.+ +.+. +++...||+.|-..-
T Consensus 66 atC~IC~KTKFAD-G~GH~C~YCq~r~CARCGGr-v~lr---------sNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 66 ATCGICHKTKFAD-GCGHNCSYCQTRFCARCGGR-VSLR---------SNKVMWVCNLCRKQQ 117 (169)
T ss_pred cchhhhhhccccc-ccCcccchhhhhHHHhcCCe-eeec---------cCceEEeccCCcHHH
Confidence 46999976 4532 23499999999999999654 2221 246788999997653
No 111
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.02 E-value=60 Score=30.57 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=22.1
Q ss_pred Cccccccccccccc--ccccccccccCcEE
Q 000223 38 SCRVCYECDSQFTV--FNRRHHCRLCGLVF 65 (1833)
Q Consensus 38 ~~~~C~~C~~~Fs~--~~RkHHCR~CG~Vf 65 (1833)
..+.|+.|+..-.- ..|.++|..||...
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEE
Confidence 45679999887654 67999999999874
No 112
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=21.04 E-value=1.9e+02 Score=33.96 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred HHHHHccCCcEEEEcCCcCHHHHHHHHHcCCeEEeecC--hH----HHHHHHHHhCCE
Q 000223 514 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK--RP----LLERIARCTGAQ 565 (1833)
Q Consensus 514 v~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk--~~----~LerIAr~TGA~ 565 (1833)
+++|++++|+|||+.........+.|.+.+..++.... .. .++.+++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 34788899999999888776666777776666555543 22 467778877754
No 113
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=20.27 E-value=44 Score=37.45 Aligned_cols=28 Identities=29% Similarity=0.917 Sum_probs=22.9
Q ss_pred cccccccccccccccccccccccCcEEecCC
Q 000223 39 CRVCYECDSQFTVFNRRHHCRLCGLVFCAKC 69 (1833)
Q Consensus 39 ~~~C~~C~~~Fs~~~RkHHCR~CG~VfC~~C 69 (1833)
...|..|.+.-.++. .||| ||.+||+..
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 355999998887877 8997 799998854
Done!