BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000224
(1833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 4/218 (1%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR K + ++F ++ GE FG +G NGAGKTTTL +IS P+ G +FGK++ +
Sbjct: 23 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE 82
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF-DLLKHAK 1596
P R+LI Y P+ + E+L A + ++++V E+ E L + K
Sbjct: 83 PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV-ERATEIAGLGEKIK 141
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
T S G RKL +A A++ +P + ILDEP++G+D + R + +++ + S Q +
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTI 199
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF 1694
++++H+M E + LC RI ++ G + G+ + LK R+
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 1/212 (0%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G + + + E +I L+G NGAGK+TT+ ++ LI P++G VFGKN+ + E
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
+RK + P+ + + E+L A +E +V + GL +K+ V
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXX-XXXXXTTHS 752
S GM RKL + AL+ + ++ ILDEPTSG+D + R + ++H+
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
Query: 753 MDEAEELGDRIAIMANGSLKCCGSSLFLKHQY 784
M E E L DRIA++ NG++ G+ LK +Y
Sbjct: 206 MLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 117 bits (293), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%)
Query: 1470 LRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFI 1529
+ K+YPGG RS V ++F ++ GE G LG +G+GKTT L +I+G E PT G +I
Sbjct: 20 VEKIYPGGARS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 1530 FGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF 1589
GK + +D +R +G Q AL +++TV +++ R K V + MD V E L
Sbjct: 75 GGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM 133
Query: 1590 DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
L +A + LSGG ++++++A A+ P +++ DEP +D +R + + ++
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFL 1698
G T+V + TH EA + R+ ++ G + G+P+ + + G
Sbjct: 194 EMGVTSVFV-THDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 87.0 bits (214), Expect = 9e-17, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ + K+Y G +V + + E +++ LLG +G+GK+T + ++ GL PT GD
Sbjct: 15 IEFVGVEKIYP---GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 620 ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMV 679
+ GK +T D+ ++ +G+ Q LF +TV +++ K V ++ +++ V E++
Sbjct: 72 VWIGGKRVT-DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 680 DEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LTWQXX 737
+ L N LSGG +++++L AL +V++ DEP + +D R T+
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 738 XXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 776
TH +EA E+ DR+ ++ G+++ G+
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 118/207 (57%), Gaps = 7/207 (3%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
++ +L+ V++GE F LG GAGKT L +I+G P G + GKD+ +D +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV-TDLSPEKHD 73
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAE-YRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
I + Q +L ++ V+++LE R+K + + R+ D + +E L ++ TLS
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP----LTLS 129
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
GG ++++++A A++ +P I++LDEP + +DP + E++S L ++ K V+ TH
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH-KKNKLTVLHITHDQ 188
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSPQHL 1690
EA+ + RI +++ G+L +G P+ +
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
++++L L + + +LG GAGK+ + ++ G P +G L+ GK++T D+ +
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT-DLSPEKHD 73
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSG 697
+ Q LFP + V+++LE +K +K+ V + ++ + ++ LSG
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSG 130
Query: 698 GMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXX--XXXXXXXXXTTHSMDE 755
G +++++L AL+ + K+++LDEP S +DP + + TH E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 756 AEELGDRIAIMANGSLKCCG 775
A + DRIA++ +G L G
Sbjct: 191 ARIMADRIAVVMDGKLIQVG 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 9/226 (3%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
D +I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 1521 YPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
PT+G+ + G+++ S+ ARR IG Q LL TV ++ L + +
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD 138
Query: 1577 RMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ V E L L KH PS LSGG K+++++A A+ +P +++ D+ ++ +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
R + E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 198 TTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 242
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Query: 556 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 615
D I++ + KV+ A+N++ L + QI ++G +GAGKST I + L P
Sbjct: 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 616 TTGDALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 671
T G LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 672 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
+ V E++ VGL DK + LSGG K+++++ AL + KV++ D+ TS +DP + R
Sbjct: 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 732 --LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 771
L TH MD + + D +A+++NG L
Sbjct: 201 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 9/223 (4%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E PT
Sbjct: 1 MIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
Query: 1524 DGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMD 1579
+G+ + G+++ S+ ARR IG Q LL TV ++ L + + +
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVK 118
Query: 1580 DVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
V E L L KH PS LSGG K+++++A A+ +P +++ DE ++ +DP R
Sbjct: 119 RRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ E++ ++ R G T ++L TH M+ + +C + ++ G+L
Sbjct: 178 SILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGEL 219
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 6/218 (2%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I++ + KV+ A+N++ L + QI ++G +GAGKST I + L PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 620 ALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV 675
LV G+ +T +++ + R+ +G+ Q+ L TV ++ + L ++ ++ V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 676 AEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR--LT 733
E++ VGL DK + LSGG K+++++ AL + KV++ DE TS +DP + R L
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 734 WQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 771
TH MD + + D +A+++NG L
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR AV+ L +++ GE LG +G GKTTTL MI+G E PT+G + +D+
Sbjct: 20 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL 79
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV--MEKLVEFDLLKHA 1595
P R I Q A+ ++TV E++ +IK + +D V +L++ + L +
Sbjct: 80 PPKDRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN- 137
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
+ P+ LSGG +++++VA A++ +P ++++DEP + +D + M I +L + K
Sbjct: 138 RYPA-QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVT 195
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
I TH EA + RI +M GQL IGSP + R
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 233
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 557 GRCIQIRKLHKVYA---TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
G I++ K+ +V TKR GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL
Sbjct: 2 GNNIEVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 61
Query: 613 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 672
PT G + FG + + + + Q ++P +TV E++ +K ++ ++
Sbjct: 62 EEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID 120
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
V + + + + +N LSGG ++++++ A++ + V+++DEP S +D +R+
Sbjct: 121 KRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA-KLRV 179
Query: 733 TWQXXXXXXXXXXXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 776
+ T TH EA +GDRIA+M G L GS
Sbjct: 180 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 6/218 (2%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR AV+ L +++ GE LG +G GKTTTL MI+G E PT+G + +D+
Sbjct: 19 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL 78
Query: 1538 PKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV--MEKLVEFDLLKHA 1595
P R I Q A+ ++TV E++ +IK + +D V +L++ + L +
Sbjct: 79 PPKDRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN- 136
Query: 1596 KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTA 1655
+ P+ LSGG +++++VA A++ +P ++++DEP + +D + M I +L + K
Sbjct: 137 RYPA-QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVT 194
Query: 1656 VILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
I TH EA + RI +M GQL IGSP + R
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 557 GRCIQIRKLHKVYA---TKR-GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGL 612
G I++ K+ +V TKR GN AVN L LT+ + + L LLG +G GK+TT+ M+ GL
Sbjct: 1 GNNIEVIKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60
Query: 613 IPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 672
PT G + FG + + + + Q ++P +TV E++ +K ++ ++
Sbjct: 61 EEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID 119
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
V + + + + +N LSGG ++++++ A++ + V+++DEP S +D +R+
Sbjct: 120 KRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA-KLRV 178
Query: 733 TWQXXXXXXXXXXXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 776
+ T TH EA +GDRIA+M G L GS
Sbjct: 179 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE 1520
D I L N+ KV+ G R+ A+++++ V AG+ +G +G +GAGK+T + ++ E
Sbjct: 21 DKHXIKLSNITKVFHQGTRTIQ--ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78
Query: 1521 YPTDGTAFIFGKDI----RSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEY 1576
PT+G+ + G+++ S+ ARR IG Q LL TV ++ L + +
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKD 138
Query: 1577 RMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ V E L L KH PS LSGG K+++++A A+ +P +++ D+ ++ +DP
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 1636 AKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
R + E++ ++ R G T ++L TH + + +C + ++ G+L
Sbjct: 198 TTRSILELLKDINRRLGLT-ILLITHEXDVVKRICDCVAVISNGEL 242
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 6/222 (2%)
Query: 556 DGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPP 615
D I++ + KV+ A+N++ L + QI ++G +GAGKST I + L P
Sbjct: 21 DKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 616 TTGDALVFGKNIT----ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELL 671
T G LV G+ +T +++ + R+ +G Q+ L TV ++ + L ++ +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 672 ESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
+ V E++ VGL DK + LSGG K+++++ AL + KV++ D+ TS +DP + R
Sbjct: 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 732 --LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSL 771
L TH D + + D +A+++NG L
Sbjct: 201 SILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543
V + + GE F+G +G GK+T L MI+G E T G FI G+ +D A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAER 75
Query: 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1601
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++ ++ +P + +LDEP + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1708
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1709 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1765
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1766 IVGRWLGNEERIKTLISS 1783
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 738
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD-AALRVQMRIEI 176
Query: 739 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543
V + + GE F+G +G GK+T L MI+G E T G FI G+ +D A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAER 75
Query: 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1601
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++ ++ +P + +LDEP + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1708
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1709 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1765
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1766 IVGRWLGNEERIKTLISS 1783
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 738
+ + LA ++ +ALSGG ++++++G L+ + V +LDEP S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD-AALRVQMRIEI 176
Query: 739 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 97.8 bits (242), Expect = 6e-20, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G AV + L + + + + LLG +G GK+TT+ M+ GL P+ G + G + AD +
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPE- 71
Query: 634 IRKGLGVCPQ-YDI--------LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 684
KG+ V P+ DI L+P +TV +++ L+ V + ++ V E+ + +GL
Sbjct: 72 --KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 744
+ +N R LSGG +++++LG A++ +V ++DEP S +D +R+ +
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA-KLRVRMRAELKKLQRQ 188
Query: 745 XXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 776
T TH EA +GDRIA+M G L+ GS
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223
Score = 94.7 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 8/218 (3%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA--- 1541
AV ++ V+ GE LG +G GKTTTL MI+G E P+ G +I G + +DP+
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFV 76
Query: 1542 ---RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1598
R I Q AL ++TV +++ +++ V +D V E L + +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK 136
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
LSGG ++++++ A++ P + ++DEP + +D + M + +L + G T I
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT-TIY 195
Query: 1659 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
TH EA + RI +M G L+ +GSP + + N
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%)
Query: 1484 VAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARR 1543
V + + GE F+G +G GK+T L MI+G E T G FI G+ +D A R
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPAER 75
Query: 1544 LIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH--AKKPSFT 1601
+G Q AL +L+V E++ ++ G + ++ V ++ E L H +KP
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV-NQVAEVLQLAHLLDRKPK-A 133
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++ ++ +P + +LD+P + +D + M ISRL R G+T +I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTH 192
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL----KTRF---------GNFLELEVKPTEVS 1708
EA L +I ++ G++ +G P L RF NFL ++V T +
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLPVKVTATAID 252
Query: 1709 SVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATAAEISLSQEMLL 1765
V +E L +++V+ +P + R + + +G I E+ + A++ L E+ +
Sbjct: 253 QVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDIADVILEGEVQV 306
Query: 1766 IVGRWLGNEERIKTLISS 1783
+ LGNE +I I S
Sbjct: 307 V--EQLGNETQIHIQIPS 322
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
+Q++ + K + G + L ++E + + +G +G GKST + M+ GL T+G
Sbjct: 3 SVQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 619 DALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
D L G+ D +G+G+ Q L+P L+V E++ L G K+E++ V ++
Sbjct: 59 D-LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 117
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXX 738
+ + LA ++ +ALSGG ++++++G L+ + V +LD+P S +D ++R+ +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD-AALRVQMRIEI 176
Query: 739 XXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKH 782
TH EA L D+I ++ G + G L L H
Sbjct: 177 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/267 (27%), Positives = 131/267 (49%), Gaps = 13/267 (4%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A++++ ++ GE LG +G+GK+T L I+G PT G + KD+ P R
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN- 76
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1604
+G Q AL ++TV +++ ++ +D V E + K + + LSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 1605 GNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
G ++++++A A++ +P +++LDEP + +D + + + + RL G T V + TH
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV-THDQA 195
Query: 1665 EAQALCTRIGIMVGGQLRCIGSPQHL----KTRF-GNFLELEVKPTEVSSVDLEDLCQII 1719
EA A+ RI ++ G++ +G+P + K +F G F L P +ED +I
Sbjct: 196 EALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGF--LGNPPMNFVEAKVEDGKLVI 253
Query: 1720 QERV-FDIPSQRRSLLDD---LEVCIG 1742
E+ IP Q ++ + EV IG
Sbjct: 254 TEKSKLPIPKQYVEIVKETGITEVIIG 280
Score = 87.8 bits (216), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 7/218 (3%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
K GN A+N++ L + + + +ALLG +G+GKST + + G+ PT+G K++T ++
Sbjct: 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT-EL 70
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIV 691
+ +G+ Q L+P +TV +++ L+ E ++ V E+ + + +N
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY 130
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT-- 749
LSGG ++++++ AL+ + +V++LDEP S +D +RL + T
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDAL-LRLEVRAELKRLQKELGITTVY 189
Query: 750 -THSMDEAEELGDRIAIMANGSLKCCGS--SLFLKHQY 784
TH EA + DRIA++ G + G+ ++ K +Y
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 113/209 (54%), Gaps = 8/209 (3%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
AV ++F V+ GE LG +G GKTTTL M++G PT G + F + +D R
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY-FDDVLVNDIPPKYRE 76
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME---KLVEFDLLKHAKKPSFT 1601
+G Q AL ++TV E++ R + +++ ++ V+E KL+ +LL +KP+
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD--RKPT-Q 133
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++A A++ P +++ DEP + +D + M I L G T+V + TH
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYV-TH 192
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
EA + +RI + G+L G+P +
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 5/206 (2%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G AV+ + + + + +ALLG +G GK+TT+ ML G+ PT+G+ + F + D+
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE-IYFDDVLVNDIPP 72
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
+ +G+ Q L+P +TV E++ + + ++ +E V E+ ++ + + ++
Sbjct: 73 KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT 132
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT---T 750
LSGG +++++L AL+ KV++ DEP S +D ++R+ + + T
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLD-ANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 751 HSMDEAEELGDRIAIMANGSLKCCGS 776
H EA + RIA+ G L G+
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 94.7 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G+ AV L L + + + L LLG +G GK+TT+ + GL PT G + N+ AD +
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI-EDNLVADPE- 74
Query: 634 IRKGLGVCP---------QYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL 684
KG+ V P Q L+P TV +++ L+ V ++ ++ V E+ + +GL
Sbjct: 75 --KGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 685 ADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 744
+ +N R LSGG +++++LG A+I KV + DEP S +D +R+ +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA-KLRVKXRAELKKLQRQ 191
Query: 745 XXXXT---THSMDEAEELGDRIAIMANGSLKCCGS 776
T TH EA GDRIA+ G L+ G+
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 8/219 (3%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD 1537
KR AV L+ ++ GE LG +G GKTTTL I+G E PT G +I ++ +D
Sbjct: 14 KRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI-EDNLVAD 72
Query: 1538 PKAA------RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL 1591
P+ R + Q AL + TV +++ +++ V + +D V E L
Sbjct: 73 PEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL 132
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
+ + LSGG ++++++ A+I P + + DEP + +D + + +L +
Sbjct: 133 TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL 192
Query: 1652 GKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
G T I TH EA RI + G+L+ +G+P +
Sbjct: 193 GVT-TIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 33/242 (13%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P+
Sbjct: 4 IIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1525 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHL------------ELYA 1568
G + + + S+ K R IG Q AL LT E++ E+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
R++ VA+ L +L H + LSGG ++++++A A++ DP +++LDEP
Sbjct: 120 RVEEVAKI---------LDIHHVLNHFPR---ELSGGQQQRVALARALVKDPSLLLLDEP 167
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ +D + ++ + +R G T +++ +H + A+ R+G++V G+L +G P+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 1689 HL 1690
L
Sbjct: 227 DL 228
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 22/230 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 618
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 619 ----DALVF--GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELL 671
D LV GK I D + +G+ Q L+P LT E++ +K KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPED---RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 672 ESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+ V VA+++D + +N R LSGG +++++L AL+ D +++LDEP S +D
Sbjct: 119 KRVEEVAKILD---IHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLD-AR 174
Query: 730 MRLTWQXXXXXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 776
MR + + +H + + DR+ ++ G L G
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 90.9 bits (224), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 33/242 (13%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I ++N+ KV+ GK VA+ ++ +++ GE FG LG +GAGKTT + +I+G + P+
Sbjct: 4 IIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1525 GTAFIFGKDIRSDPK----AARRLIGYCPQFDALLEYLTVQEHL------------ELYA 1568
G + + + S+ K R IG Q AL LT E++ E+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1569 RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
R++ VA+ L +L H + LSG ++++++A A++ DP +++LDEP
Sbjct: 120 RVEEVAKI---------LDIHHVLNHFPR---ELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQ 1688
+ +D + ++ + +R G T +++ +H + A+ R+G++V G+L +G P+
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226
Query: 1689 HL 1690
L
Sbjct: 227 DL 228
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 22/230 (9%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG- 618
I ++ + KV+ K+G A++++ + + + +LG +GAGK+T + ++ GL P+TG
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 619 ----DALVF--GKNITADMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELL 671
D LV GK I D + +G+ Q L+P LT E++ +K KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPED---RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 672 ESV--VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+ V VA+++D + +N R LSG +++++L AL+ D +++LDEP S +D
Sbjct: 119 KRVEEVAKILD---IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD-AR 174
Query: 730 MRLTWQXXXXXXXX---XXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 776
MR + + +H + + DR+ ++ G L G
Sbjct: 175 MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPT--- 616
I++ L VY + G A + + L + EN + A++G + +GKST I + +PP
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 617 -TGDALVFGKN-ITADMDEIR----KGLGVCPQ--YDILFPELTVREHLEMFAVLKGVK- 667
+G L GK+ +T +E+R K + + PQ L P + V EH + GV+
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 668 --EELLESVVAEMVDEVGLADK--VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTS 723
EL+E +E + V L + +N LSGGMK+++ + +AL+ D V+ILDEPTS
Sbjct: 125 SHSELIEK-ASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTS 183
Query: 724 GMDPYSMRLTWQXXXXXXXXXXXXX--TTHSMDEAEELGDRIAIMANGSL 771
+D + Q TH + A EL D++A++ G+L
Sbjct: 184 ALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNL 233
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 18/233 (7%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
II + +LR VY R A ++ + +G + +GK+T + ++ P
Sbjct: 4 IIRVEDLRAVY--LVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPN 61
Query: 1524 ----DGTAFIFGKDIRSDPKAARRLIGY-----CPQF--DALLEYLTVQEHLELYARIKG 1572
G GKD+ + + R I + PQ +L + V EH + G
Sbjct: 62 GRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHG 121
Query: 1573 V--AEYRMDDVVMEKLVEFDLLKHAKKPSF--TLSGGNKRKLSVAIAMIGDPPIVILDEP 1628
V + + + EKL L A S+ LSGG K+++ +A+A++ DP ++ILDEP
Sbjct: 122 VRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 1629 STGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
++ +D + + + +++ L T +I TH + A L ++ ++ GG L
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKIT-LIFVTHDIAVAAELADKVAVIYGGNL 233
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 85.5 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
+I L+N+ K Y G+ + A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MIKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1524 DGTAFIFG---KDIRSD--PKAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGV 1573
+G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1574 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
E R + K+ E + KP+ LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 620 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK-------- 664
V+ NI T D+D+ R +G Q L P LT E++E+ + K
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 665 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
++ LE + ++E K N LSGG ++++++ AL + +++ D+PT
Sbjct: 120 ERRKRALECLKMAELEERFANHKPN----QLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 725 MDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSLK 772
+D + Q TH ++ A G+RI + +G ++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 13/235 (5%)
Query: 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 617
+ I + +L K + G+ + + + + E +++ ++G +G+GKST + L L
Sbjct: 2 QMIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 57
Query: 618 GDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLE 672
G+ ++ G N+ A +++++R+ +G+ Q LFP +TV ++ + A +K K E E
Sbjct: 58 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAE 116
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-R 731
+ E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP +
Sbjct: 117 AKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 176
Query: 732 LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCG--SSLFLKHQY 784
+ TH M A E+GDR+ M G + G LF + Q+
Sbjct: 177 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 231
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 6/210 (2%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKAARRL 1544
+ ++ GE +G +G+GK+T L ++ E +G I G ++++ + R
Sbjct: 21 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 80
Query: 1545 IGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
+G Q L ++TV ++ L +++ + + ME L + L A +LS
Sbjct: 81 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 140
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
GG +++++A A+ +P I++ DEP++ +DP + V+ +L+ +G T V++ TH M
Sbjct: 141 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVV-THEM 198
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
A+ + R+ M GG + G P+ L R
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 84.0 bits (206), Expect = 7e-16, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I L+N+ K Y G+ + A+ ++ +++ GE G +G+GK+T L++I + PT+
Sbjct: 2 IKLKNVTKTYKXGE--EIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTE 59
Query: 1525 GTAFIFG---KDIRSD--PKAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGVA 1574
G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
E R + K E + KP+ LSGG ++++++A A+ +PPI++ DEP+ +D
Sbjct: 120 ERRKRALECLKXAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADEPTGALDS 178
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 179 KTGEKIXQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 58.9 bits (141), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 24/230 (10%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+++ + K Y A+ ++ L + E + +++ G +G+GKST ++++ L PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 620 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK-------- 664
V+ NI T D+D+ R +G Q L P LT E++E+ + K
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 665 GVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSG 724
++ LE + ++E K N LSGG ++++++ AL + +++ DEPT
Sbjct: 120 ERRKRALECLKXAELEERFANHKPN----QLSGGQQQRVAIARALANNPPIILADEPTGA 175
Query: 725 MDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSLK 772
+D + Q TH ++ A G+RI + +G ++
Sbjct: 176 LDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 13/235 (5%)
Query: 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 617
+ I + +L K + G+ + + + + E +++ ++G +G+GKST + L L
Sbjct: 23 QMIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 78
Query: 618 GDALVFGKNITA---DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLE 672
G+ ++ G N+ A +++++R+ +G+ Q LFP +TV ++ + A +K K E E
Sbjct: 79 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAE 137
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM-R 731
+ E++D+VGL DK + +LSGG +++++ AL + K+++ DEPTS +DP +
Sbjct: 138 AKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197
Query: 732 LTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCG--SSLFLKHQY 784
+ TH M A E+GDR+ M G + G LF + Q+
Sbjct: 198 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 6/210 (2%)
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS---DPKAARRL 1544
+ ++ GE +G +G+GK+T L ++ E +G I G ++++ + R
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 1545 IGYCPQFDALLEYLTVQEHLELYA-RIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLS 1603
+G Q L ++TV ++ L +++ + + ME L + L A +LS
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 161
Query: 1604 GGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSM 1663
GG +++++A A+ +P I++ DEP++ +DP + V+ +L+ +G T V++ TH M
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVV-THEM 219
Query: 1664 NEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693
A+ + R+ M GG + G P+ L R
Sbjct: 220 GFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
++ L+N+ K Y G+ + A+ ++ +++ GE +G +G+GK+T L++I + PT
Sbjct: 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT 58
Query: 1524 DGTAFIFG---KDIRSDP--KAARRLIGYCPQFDALLEYLTVQEHLEL-----YARIKGV 1573
+G +I D+ D K R IG+ Q L+ LT E++EL Y
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1574 AEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMD 1633
E R + K+ E + KP+ LSGG ++++++A A+ +PPI++ D+P+ +D
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-QLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1634 PIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+ +++ +L+ GKT V++ TH +N A+
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKT-VVVVTHDINVAR 210
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ + K Y A+ ++ L + E + ++++G +G+GKST ++++ L PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 620 ALVFGKNI-TADMDE------IRKGLGVCPQYDILFPELTVREHLEMFAVLK---GVKEE 669
V+ NI T D+D+ R +G Q L P LT E++E+ + K + E
Sbjct: 62 --VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 670 LLESVVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPY 728
E + L ++ N LSGG ++++++ AL + +++ D+PT +D
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 729 SMRLTWQ--XXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLK 772
+ Q TH ++ A G+RI + +G ++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 81.3 bits (199), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++++ LH Y G A+ + L + QI+ L+G NGAGK+TT+S + GL+ G
Sbjct: 7 LEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 620 ALVFGKNITADMDEI--RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE 677
+ G++IT + R G+ + P+ +FPELTV E+L A + KE + +
Sbjct: 63 IIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWI 122
Query: 678 MVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
L +++ + LSGG ++ L++G AL K++ DEP+ G+ P
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAP 172
Score = 73.9 bits (180), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA--R 1542
A+ + V G+ +G NGAGKTTTLS I+G G G+DI + P R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTL 1602
I P+ + LTV E+L A + E D+ + L + K+ TL
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTL 140
Query: 1603 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHS 1662
SGG ++ L++ A+ P ++ DEPS G+ PI ++EVI +++ ++G T +++ ++
Sbjct: 141 SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKIN-QEGTTILLVEQNA 199
Query: 1663 M 1663
+
Sbjct: 200 L 200
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 80.5 bits (197), Expect = 9e-15, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 108/212 (50%), Gaps = 10/212 (4%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1544
++ ++ + +GE +G NGAGK+T L +++G P+ G + G+++ S PKA R
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSG 1604
Q+ L +V E +++ G ++ R + + + + D L A++ LSG
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR--QALQQVMAQTDCLALAQRDYRVLSG 144
Query: 1605 GNKRKLSVA--IAMIGDP-PI---VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
G ++++ +A +A + P P + LDEP++ +D ++ ++ +L TRQ AV
Sbjct: 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL-TRQEPLAVCC 203
Query: 1659 TTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
H +N A RI ++ G+L G+P+ +
Sbjct: 204 VLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 15/209 (7%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKG 637
+N + L + +++A++G NGAGKST + +L G + P+ G+ + G+N+ + + +
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKE--ELLESVVAEMVDEVGLADKVNIVVRAL 695
V QY L +V E ++M G + + L+ V+A+ D + LA + R L
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQ-TDCLALAQR---DYRVL 142
Query: 696 SGGMKRKLSLGIALIG------DSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXX- 748
SGG ++++ L L + + LDEPTS +D Y + T +
Sbjct: 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202
Query: 749 -TTHSMDEAEELGDRIAIMANGSLKCCGS 776
H ++ A DRI ++A G L CG+
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
LLG GAGKS + ++ G++ P G+ + G +IT E R+G+G PQ LFP L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-RRGIGFVPQDYALFPHLSV 87
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713
++ L+ V+ + V EM +++G+A ++ LSGG +++++L AL+
Sbjct: 88 YRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145
Query: 714 KVVILDEPTSGMDPYSMRLTWQXXXXXXXX--XXXXXTTHSMDEAEELGDRIAIMANGSL 771
++++LDEP S +D + + + TH + EA L D +A+M NG +
Sbjct: 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205
Score = 77.0 bits (188), Expect = 8e-14, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 1501 FLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTV 1560
LG GAGK+ L +I+G P G + G DI P RR IG+ PQ AL +L+V
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRGIGFVPQDYALFPHLSV 87
Query: 1561 QEHLELYARIKGVAEYRMDDVVM-EKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGD 1619
++ R E M EKL LL +KP+ LSGG ++++++A A++
Sbjct: 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD--RKPA-RLSGGERQRVALARALVIQ 144
Query: 1620 PPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGG 1679
P +++LDEP + +D K + E + R R+ ++ TH + EA L + +M+ G
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203
Query: 1680 QL 1681
++
Sbjct: 204 RI 205
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+N+ YP R + ++ + L V++G+ +G +G GK+TT+ ++ P DG
Sbjct: 390 FKNIHFSYP--SRKEVQI-LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYR 1577
I G+DIR+ + + R +IG Q + +L T+ E++ Y R K V E
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIAENIR-YGREDVTMDEIEKAVKEAN 504
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
D +M+ +FD L + LSGG K+++++A A++ +P I++LDE ++ +D ++
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ + + R+G+T +++ H ++ + I GG + G+ L G +
Sbjct: 563 AVVQAALDK--AREGRTTIVI-AHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 1698 LELEVKPTEVSSVDL 1712
+L + T + ++L
Sbjct: 619 FKLVMTQTAGNEIEL 633
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 631
R + + L L + + Q LAL+G +G GKST + +L P G + GK I ++
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELL----ESVVAEMVDEVGLAD 686
+R LG+ Q ILF + ++ E++ + V EE++ E+ + + +D L D
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 687 KVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 742
K N V LSGG K+++++ AL+ +++LDE TS +D S ++ +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 743 XXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDAS 800
H + + D I ++ NG +K G+ L Q G+ +++ V++ S
Sbjct: 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 11/246 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ + +H Y +++ + L L + Q +AL+G++G GKSTT+ ++ L P G
Sbjct: 388 LEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 620 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTV------REHLEMFAVLKGVKEELLE 672
+ G++I T ++ +R+ +GV Q +LF RE + M + K VKE
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ ++ + V LSGG K+++++ AL+ + K+++LDE TS +D S +
Sbjct: 507 DFIMKLPHQ--FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 733 TWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 792
H + D IA G + G+ L + G+ + L +
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623
Query: 793 VKSAPD 798
++A +
Sbjct: 624 TQTAGN 629
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 114/223 (51%), Gaps = 13/223 (5%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1544
+ L+ V+ G+ +G++G GK+T + ++ P G+ F+ GK+I+ + + R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 1545 IGYCPQ----FD-ALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
+G Q FD ++ E + ++ + Y I A+ ++ L + + K
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
+ LSGG K+++++A A++ P I++LDE ++ +D +++ + E + + R+G+T ++
Sbjct: 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTCIV 1225
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ H ++ Q I ++ G+++ G+ Q L + G + +
Sbjct: 1226 I-AHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 1467 LRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGT 1526
+N+ YP R + ++ + L V++G+ +G +G GK+TT+ ++ P DG
Sbjct: 390 FKNIHFSYP--SRKEVQI-LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 1527 AFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYAR--------IKGVAEYR 1577
I G+DIR+ + + R +IG Q + +L T+ E++ Y R K V E
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIAENIR-YGREDVTMDEIEKAVKEAN 504
Query: 1578 MDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAK 1637
D +M+ +FD L + LSGG K+++++A A++ +P I++LDE ++ +D ++
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 1638 RFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNF 1697
+ + + R+G+T +++ H ++ + I GG + G+ L G +
Sbjct: 563 AVVQAALDK--AREGRTTIVI-AHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIY 618
Query: 1698 LELEVKPTEVSSVDL 1712
+L + T + ++L
Sbjct: 619 FKLVMTQTAGNEIEL 633
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 631
R + + L L + + Q LAL+G +G GKST + +L P G + GK I ++
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVK-EELL----ESVVAEMVDEVGLAD 686
+R LG+ Q ILF + ++ E++ + V EE++ E+ + + +D L D
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDS--LPD 1159
Query: 687 KVNIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 742
K N V LSGG K+++++ AL+ +++LDE TS +D S ++ +
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE 1219
Query: 743 XXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKSAPDAS 800
H + + D I ++ NG +K G+ L Q G+ +++ V++ S
Sbjct: 1220 GRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRS 1276
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 11/246 (4%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
++ + +H Y +++ + L L + Q +AL+G++G GKSTT+ ++ L P G
Sbjct: 388 LEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446
Query: 620 ALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTV------REHLEMFAVLKGVKEELLE 672
+ G++I T ++ +R+ +GV Q +LF RE + M + K VKE
Sbjct: 447 VSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
+ ++ + V LSGG K+++++ AL+ + K+++LDE TS +D S +
Sbjct: 507 DFIMKLPHQ--FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 733 TWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTL 792
H + D IA G + G+ L + G+ + L +
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623
Query: 793 VKSAPD 798
++A +
Sbjct: 624 TQTAGN 629
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 114/223 (51%), Gaps = 13/223 (5%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1544
+ L+ V+ G+ +G++G GK+T + ++ P G+ F+ GK+I+ + + R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 1545 IGYCPQ----FD-ALLEYLTVQEHLEL--YARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
+G Q FD ++ E + ++ + Y I A+ ++ L + + K
Sbjct: 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
+ LSGG K+++++A A++ P I++LDE ++ +D +++ + E + + R+G+T ++
Sbjct: 1169 GT-QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREGRTCIV 1225
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ H ++ Q I ++ G+++ G+ Q L + G + +
Sbjct: 1226 I-AHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKGIYFSM 1266
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
K A+ +++ + GEC G G+GK+T L +++G PT G G+ R R
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKGYEIR 77
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF---DLLKHAKKPS 1599
R IG Q+ ++ + E+ +K R +++K +EF D +
Sbjct: 78 RNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
F LSGG KR++++A ++ +P I+ILDEP G+D K + ++ + T GKT VIL
Sbjct: 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKT-VILI 194
Query: 1660 THSMNEAQALCTRIGIMVGGQ 1680
+H + R+ ++ G+
Sbjct: 195 SHDIETVINHVDRVVVLEKGK 215
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+GD L G+ EIR+
Sbjct: 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--YEIRRN 79
Query: 638 LGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----ADKVNI 690
+G+ QY D F E E FAV + +V + ++ VGL D+V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 137
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 138 F---LSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 1477 GKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGK---D 1533
G+ K + +++ + G+ + G NGAGKTT L++++ E T GT +FGK
Sbjct: 28 GRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGK 87
Query: 1534 IRSDPKAARRLIGYCPQFDALLEYLTVQEHL---ELYARIKGVAEYR-MDDVVMEKLVEF 1589
+ + R+ IG+ +LLE E + + K + Y+ +DD + +
Sbjct: 88 VGYSAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE--AH 143
Query: 1590 DLLK----HAKKPSFT--LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEV 1643
LLK AK + LS G K+++ +A A+ G P ++ILDEP+ G+D IA+ + +
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 1644 ISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQ 1680
+ LS A I TH + E A ++I ++ GQ
Sbjct: 204 LDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQ 240
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 13/144 (9%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGK---NITADMDEIRKGLGVCPQYDIL--F 648
L G NGAGK+T +++L P T+G +FGK + + +R+ +G + +L F
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFV-SHSLLEKF 110
Query: 649 PE------LTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRK 702
E + + + V + + +E+ + +++ VG + K + LS G K++
Sbjct: 111 QEGERVIDVVISGAFKSIGVYQDIDDEI-RNEAHQLLKLVGXSAKAQQYIGYLSTGEKQR 169
Query: 703 LSLGIALIGDSKVVILDEPTSGMD 726
+ + AL G +V+ILDEP +G+D
Sbjct: 170 VXIARALXGQPQVLILDEPAAGLD 193
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
K A+ +++ + GEC G G+GK+T L +++G PT G G+ R R
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKGYEIR 79
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF---DLLKHAKKPS 1599
R IG Q+ ++ + E+ +K R +++K +EF D +
Sbjct: 80 RNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 138
Query: 1600 FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILT 1659
F LSGG KR++++A ++ +P I+ILDEP G+D K + ++ + T GKT VIL
Sbjct: 139 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKT-VILI 196
Query: 1660 THSMNEAQALCTRIGIMVGGQ 1680
+H + R+ ++ G+
Sbjct: 197 SHDIETVINHVDRVVVLEKGK 217
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 14/156 (8%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A+ ++ L + E + L + G+ G+GKST + ++ GLI PT+GD L G+ EIR+
Sbjct: 24 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--YEIRRN 81
Query: 638 LGVCPQY--DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----ADKVNI 690
+G+ QY D F E E FAV + +V + ++ VGL D+V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF 139
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
LSGG KR++++ ++ + ++ILDEP G+D
Sbjct: 140 F---LSGGEKRRVAIASVIVHEPDILILDEPLVGLD 172
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 25/259 (9%)
Query: 1480 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK 1539
SD A+ + +++ GE LG NG GK+T +G P+ G K I K
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 1540 AARRL---IGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL---- 1591
+L IG Q D L +V + + G ++ + + K V+ L
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSF-----GAVNMKLPEDEIRKRVDNALKRTG 132
Query: 1592 LKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTR 1650
++H K KP+ LS G K+++++A ++ +P ++ILDEP+ G+DP+ + +++ +
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 1651 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV-KPTEVSS 1709
G T +I+ TH ++ C + +M G++ G+P+ + F E EV + +
Sbjct: 193 LGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV------FAEKEVIRKVNLRL 245
Query: 1710 VDLEDLCQIIQER---VFD 1725
+ L +I++E+ VFD
Sbjct: 246 PRIGHLMEILKEKDGFVFD 264
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 10/207 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT---ADMDEI 634
A+ + + + ++ A+LG NG GKST G++ P++G L K I + ++
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 635 RKGLGVCPQY-DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
R+ +G+ Q D +V + + AV + E+ + V + G+ +
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH 142
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS----MRLTWQXXXXXXXXXXXXXT 749
LS G K+++++ L+ + KV+ILDEPT+G+DP M+L +
Sbjct: 143 CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE--MQKELGITIIIA 200
Query: 750 THSMDEAEELGDRIAIMANGSLKCCGS 776
TH +D D + +M G + G+
Sbjct: 201 THDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 8/210 (3%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD----PKAA 1541
++ ++ S+ GE +G +G GKTT L ++G E P G + GK I S P
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 1542 RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKH-AKKPSF 1600
RRL GY Q L +LTV ++ Y G + +E ++E + A +
Sbjct: 80 RRL-GYLVQEGVLFPHLTVYRNIA-YGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH 137
Query: 1601 TLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTT 1660
LSGG +++ ++A A+ DP +++LDEP + +D +R + E + GK+AV + +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV-S 196
Query: 1661 HSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
H EA RI +M G++ SP L
Sbjct: 197 HDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-----ALVFGKNITA 629
N +N + L+L +IL ++G +G GK+T + L G P +G+ +F KN
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEM-FAVLKGVKEELLESVVAEMVDEVGLADKV 688
+ E R LG Q +LFP LTV ++ KG + + + A M++ G+++
Sbjct: 76 PVRERR--LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-MLELTGISELA 132
Query: 689 NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXX 748
LSGG +++ +L AL D ++++LDEP S +D R +
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA 192
Query: 749 --TTHSMDEAEELGDRIAIMANGSL 771
+H +EA + DRIA+M G +
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGRI 217
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 72.0 bits (175), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 102/209 (48%), Gaps = 13/209 (6%)
Query: 1464 IIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPT 1523
I+ N++KV G + + ++ SV+ GE +G +G+GK+T L ++ + PT
Sbjct: 4 ILRAENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57
Query: 1524 DGTAFIFGKDIRSDPKAA-----RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM 1578
+G F+ GK++ + R +G+ QF L+ LT E++ + G +
Sbjct: 58 EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA 117
Query: 1579 DDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638
+ L E L + + LSGG ++++++A A+ +P ++ DEP+ +D +
Sbjct: 118 KERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTK 177
Query: 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+ ++ L +G T++++ TH A+
Sbjct: 178 RVMDIF--LKINEGGTSIVMVTHERELAE 204
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT 617
R I+K+ + Y +G + L++ + + ++++G +G+GKST + +L L PT
Sbjct: 6 RAENIKKVIRGYEILKG-------ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 618 GDALVFGKNI----TADMDEIR-KGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLE 672
G + GK + ++ +R + LG Q+ L PELT E++ + + G ++ +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 673 SVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
++ E+GL DK++ LSGG ++++++ AL + ++ DEPT +D
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 118 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 171 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 224
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 752
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 197
Query: 753 MDEAEELGDRIAIMANGSL 771
+ + DRI +M G +
Sbjct: 198 LSTVKN-ADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 230
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 752
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 753 MDEAEELGDRIAIMANGSL 771
+ + DRI +M G +
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 4 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 59
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 60 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 120 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 172
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 173 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 226
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 81 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 752
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 753 MDEAEELGDRIAIMANGSL 771
+ + DRI +M G +
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 34/223 (15%)
Query: 1487 HSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIG 1546
L F + G+ LG NG GK+T L ++ G P G ++ IG
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS------------IG 69
Query: 1547 YCPQF----------DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAK 1596
+ PQF D +L + H+ +A+ K +Y+ V M+ L +L AK
Sbjct: 70 FVPQFFSSPFAYSVLDIVL--MGRSTHINTFAKPKS-HDYQ---VAMQALDYLNLTHLAK 123
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+ +LSGG ++ + +A A+ + +++LDEP++ +D + + ++ L+ Q T V
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT-V 182
Query: 1657 ILTTHSMNEAQALCTRIGIMVG-----GQLRCIGSPQHLKTRF 1694
+ TTH N+ A+ + ++ G+ R I + ++L F
Sbjct: 183 VFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALF 225
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
L L + ILA+LG NG GKST + +L+G+ P G E+ + +G
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------EVYQSIGFV 71
Query: 642 PQ-------YDILFPELTVRE-HLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
PQ Y +L L R H+ FA K + V + +D + L
Sbjct: 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ----VAMQALDYLNLTHLAKREFT 127
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+LSGG ++ + + A+ + K+++LDEPTS +D
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538
R + + + + G+ + +G NG+GKTT L +++G G F+ G +DP
Sbjct: 20 RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLDGSP--ADP 76
Query: 1539 KAARRLIGYCPQF-DALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKK 1597
R+ +GY Q + + TV+E + I G+ E M + + L L A
Sbjct: 77 FLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAA 136
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
LSGG K++L++A + D + LDEP + +DP ++R +++V+ L +GK +I
Sbjct: 137 DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN-EGK-GII 194
Query: 1658 LTTHSM 1663
L TH +
Sbjct: 195 LVTHEL 200
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 590 QILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC---PQYDI 646
+I ++G NG+GK+T + +L GL+ +F AD +RK +G P I
Sbjct: 38 KIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKNVGYVFQNPSSQI 94
Query: 647 LFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLG 706
+ TV E + + G+ E + + ++++ VGL+ LSGG K++L++
Sbjct: 95 IGA--TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIA 152
Query: 707 IALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXX-XXXXXTTHSMDEAEELGDRIAI 765
L D++ + LDEP S +DP S R +Q TH ++ +++ D I
Sbjct: 153 SMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDM-DFILH 211
Query: 766 MANGSLKCCGS 776
++NG++ CGS
Sbjct: 212 ISNGTIDFCGS 222
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 128/250 (51%), Gaps = 22/250 (8%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
+ +N+R YP +R + ++ + L+FSV+ G+ +G +G GK+T ++++
Sbjct: 1077 VIFKNVRFAYP--ERPEIEI-LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 1525 GTAFIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELY---------ARIKGVA 1574
G FI G +I++ +P+ R I Q L + ++ E++ +Y A+++ A
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENI-IYGLDPSSVTMAQVEEAA 1191
Query: 1575 EYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP 1634
+ +L E + + + LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTHSMNEA-QALCTRIGIMVGGQLRCIGSPQHLKTR 1693
+++ + E + R R+G+T +++ H +N A C I ++ G + G+ L +
Sbjct: 1251 ESEKVVQEALDR--AREGRTCIVI-AHRLNTVMNADC--IAVVSNGTIIEKGTHTQLMSE 1305
Query: 1694 FGNFLELEVK 1703
G + +L K
Sbjct: 1306 KGAYYKLTQK 1315
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 543 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 602
++++SL +++++ G+ I + + Y +R + L ++ Q LAL+G +G GK
Sbjct: 1061 IDSLSLAGEKKKLYGKVI-FKNVRFAYP-ERPEIEILKGLSFSVEPGQTLALVGPSGCGK 1118
Query: 603 STTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHL---- 657
ST +++L G+ + G I T + + R + + Q LF + ++ E++
Sbjct: 1119 STVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL 1177
Query: 658 -----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGD 712
M V + + + + +AE+ + G +V LSGG K+++++ AL+ +
Sbjct: 1178 DPSSVTMAQVEEAARLANIHNFIAELPE--GFETRVGDRGTQLSGGQKQRIAIARALVRN 1235
Query: 713 SKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLK 772
K+++LDE TS +D S ++ + H ++ D IA+++NG++
Sbjct: 1236 PKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTII 1294
Query: 773 CCGSSLFLKHQYGVGYTLT 791
G+ L + G Y LT
Sbjct: 1295 EKGTHTQLMSEKGAYYKLT 1313
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 17/290 (5%)
Query: 540 EPVVEAIS-LDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHN 598
+PV+++ S K ++ G I + +H Y + R + + + L + Q +AL+G +
Sbjct: 396 KPVIDSSSKAGRKDMKIKGD-ITVENVHFTYPS-RPDVPILRGMNLRVNAGQTVALVGSS 453
Query: 599 GAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDILFPELTVREHL 657
G GKST IS+L+ G + G ++ +++ +RK + V Q LF T+ E++
Sbjct: 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENI 512
Query: 658 EMFAVLKGV-KEELLESVVAEMVDEV--GLADKVNIVV----RALSGGMKRKLSLGIALI 710
+ +G+ +EE++ + ++ L + N +V LSGG K+++++ AL+
Sbjct: 513 SLGK--EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570
Query: 711 GDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGS 770
+ K+++LDE TS +D S + Q H + D I NG
Sbjct: 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQ 629
Query: 771 LKCCGSSLFLKHQYGVGYTLTLVKSAPDA--SAAADIVYRHIPSALCVSE 818
+ G L Q G+ Y L ++ DA SAA R A SE
Sbjct: 630 VVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSE 679
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 138/294 (46%), Gaps = 39/294 (13%)
Query: 1428 EPLLQSSSESDTLDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVH 1487
+P++ SSS++ D+ D+ VE N+ YP R D + +
Sbjct: 396 KPVIDSSSKAGRKDMKIKGDITVE-----------------NVHFTYP--SRPDVPI-LR 435
Query: 1488 SLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIG 1546
+ V AG+ +G++G GK+T +S++ G I G D+R + + R+ +
Sbjct: 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495
Query: 1547 YCPQFDALLEYLTVQEHLEL----YARIKGVAEYRMDDVVMEKLVE-----FDLLKHAKK 1597
Q AL T++E++ L R + VA +M + EK ++ ++ L +
Sbjct: 496 VVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANA--EKFIKTLPNGYNTLVGDRG 552
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVI 1657
LSGG K+++++A A++ +P I++LDE ++ +D ++ + + + + + +G+T +I
Sbjct: 553 TQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTII 608
Query: 1658 LTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 1711
+ H ++ + I GQ+ +G + L + G + +L T +VD
Sbjct: 609 I-AHRLSTIRNADLIISCK-NGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVD 660
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G G+GK+T +I P +
Sbjct: 4 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPEN 59
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 60 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 120 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 172
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 173 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 226
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 81 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 139
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 752
LSGG ++++++ AL+ + K++I DE TS +D S + + H
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 199
Query: 753 MDEAEELGDRIAIMANGSL 771
+ + DRI +M G +
Sbjct: 200 LSTVKN-ADRIIVMEKGKI 217
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 114/238 (47%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I D+ ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSAL 176
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T VI+ H ++ + RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRT-VIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKEL 230
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHS 752
LSGG ++++++ AL+ + K++I D+ TS +D S + + H
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
Query: 753 MDEAEELGDRIAIMANGSL 771
+ + DRI +M G +
Sbjct: 204 LSTVKN-ADRIIVMEKGKI 221
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 2 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 118 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T +I+ A RI +M G++ G + L
Sbjct: 171 DYESEHVIMRNMHKIC--KGRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKEL 224
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
LSGG ++++++ AL+ + K++I DE TS +D
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 1465 IYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD 1524
I RN+R Y + D+ V + ++ S++ GE G +G +G+GK+T +I P +
Sbjct: 8 ITFRNIRFRY----KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1525 GTAFIFGKDIR-SDPKAARRLIGYCPQFDALLEYLTVQ-----------EHLELYARIKG 1572
G I G D+ +DP RR +G Q + LL + E + A++ G
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 1573 VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM 1632
D + E ++ + + LSGG ++++++A A++ +P I+I DE ++ +
Sbjct: 124 A-----HDFISELREGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 176
Query: 1633 DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
D ++ + + ++ +G+T +I+ A RI +M G++ G + L
Sbjct: 177 DYESEHVIMRNMHKIC--KGRTVIIIAARLSTVKNA--DRIIVMEKGKIVEQGKHKEL 230
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNIT-ADMDEIRKG 637
++++ L++ + +++ ++G +G+GKST ++ P G L+ G ++ AD + +R+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-LADKVNIVV---- 692
+GV Q ++L ++ +++ + V++ + + +A D + L + N +V
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 143
Query: 693 RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
LSGG ++++++ AL+ + K++I DE TS +D
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-D 630
K+ N + S+ + AL+GH G+GKST I+ L+ GD + GKN+ +
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 631 MDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-GLADKV 688
+ IR +G+ PQ ILF E T++ ++ ++ L EE++++ A++ D + L K
Sbjct: 88 RNSIRSIIGIVPQDTILFNE-TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKW 145
Query: 689 NIVV----RALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
+ +V LSGG ++++++ L+ D K+VI DE TS +D
Sbjct: 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDI-RSDPKAARRL 1544
+ S+ F + +G +G G+GK+T ++ Y +G I GK++ + + + R +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKYNRNSIRSI 94
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEF--------DLLKHAK 1596
IG PQ D +L T++ ++ LY ++ E + +L +F D + K
Sbjct: 95 IGIVPQ-DTILFNETIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
LSGG ++++++A ++ DP IVI DE ++ +D + + + L R+ +T +
Sbjct: 153 --GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--RKNRTLI 208
Query: 1657 IL 1658
I+
Sbjct: 209 II 210
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVA--EMVDEVG-LADKVNIVVR 693
C Q+ + P T++E+ ++ GV E SV+ ++ +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 156 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 216 VTSKMEHLKKADKILILHEGS 236
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 102/205 (49%), Gaps = 10/205 (4%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKG 637
++ + ++ ++A+LG G+GKST ++++ LI P G V ++ T + ++R
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418
Query: 638 LGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV-VAEMVDEV-----GLADKVNIV 691
+ PQ +LF T++E+L+ + +E++E+ +A++ D + G +V
Sbjct: 419 ISAVPQETVLFSG-TIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 751
R SGG K++LS+ AL+ KV+ILD+ TS +DP + + T
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 752 SMDEAEELGDRIAIMANGSLKCCGS 776
+ A L D+I ++ G + G+
Sbjct: 537 KIPTA-LLADKILVLHEGKVAGFGT 560
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRLIGY 1547
+ FSV+ G LG G+GK+T +++I P G + D+R+ K R I
Sbjct: 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421
Query: 1548 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVME--KLVEF-DLL--------KHAK 1596
PQ + +L T++E+L+ + R E DD ++E K+ + D + +
Sbjct: 422 VPQ-ETVLFSGTIKENLK-WGR-----EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
+ SGG K++LS+A A++ P ++ILD+ ++ +DPI ++ + + + R + +G T
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTF 532
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 1690
I+T L +I ++ G++ G+ + L
Sbjct: 533 IITQKI--PTALLADKILVLHEGKVAGFGTHKEL 564
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 36 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 83
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 84 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 183
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 29 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 82
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV--AEMVDEVG-LADKV 688
+ C Q+ + P T++E++ +F V E SV+ ++ +++ A+K
Sbjct: 83 ------ISFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKD 132
Query: 689 NIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 744
NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 192
Query: 745 XXXXTTHSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 193 KTRILVTSKMEHLKKADKILILHEGS 218
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 17/241 (7%)
Query: 543 VEAISLDMKQQEVDGRCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGK 602
V A +++KQ +D H + + + L++ + + +A +G +G GK
Sbjct: 328 VGAQPIEIKQGRIDID-------HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 603 STTISMLVGLIPPTTGDALVFGKNITADM-DEIRKGLGVCPQYDILFPELTVREHLEMFA 661
ST I+++ T+G L+ G NI + +R +G+ Q +ILF + TV+E++ +
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENI-LLG 438
Query: 662 VLKGVKEELLESV-VAEMVDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKV 715
EE++E+ +A D + G +V LSGG K++LS+ + + +
Sbjct: 439 RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498
Query: 716 VILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCG 775
+ILDE TS +D S + + H + D+I ++ NG + G
Sbjct: 499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETG 557
Query: 776 S 776
+
Sbjct: 558 T 558
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 13/219 (5%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGY 1547
+ S++ GE F+G +G GK+T +++I T G I G +I+ + R IG
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 1548 CPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLL------KHAKKPSFT 1601
Q D +L TV+E++ L R E ++ M +F + +
Sbjct: 420 VQQ-DNILFSDTVKENI-LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG K++LS+A + +PPI+ILDE ++ +D ++ + E + LS + +T +I+ H
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIV-AH 534
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
++ +I ++ G + G+ + L + G + L
Sbjct: 535 RLSTITH-ADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 1496 GECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALL 1555
GE LG NG+GKTT L ISG P G FI G ++R R I Y
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK----IRNYIRYSTNLPEAY 84
Query: 1556 EY-LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVA 1613
E +TV + + LY +KG+ D+ +E L L + ++ + LS G + +
Sbjct: 85 EIGVTVNDIVYLYEELKGLDR----DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140
Query: 1614 IAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
+A+ P IV LDEP +D A+R VISR GK IL TH ++
Sbjct: 141 LALASQPEIVGLDEPFENVDA-ARR---HVISRYIKEYGKEG-ILVTHELD 186
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 594 LLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDILFPELTV 653
+LG NG+GK+T + + GL+ P +G+ + G + + IR + Y+I +TV
Sbjct: 35 ILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI---GVTV 90
Query: 654 REHLEMFAVLKGVKEELLESVVAEMVDEVGLADKV-NIVVRALSGGMKRKLSLGIALIGD 712
+ + ++ LKG+ +L EM+ + L +++ + LS G + +AL
Sbjct: 91 NDIVYLYEELKGLDRDLF----LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146
Query: 713 SKVVILDEPTSGMD 726
++V LDEP +D
Sbjct: 147 PEIVGLDEPFENVD 160
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 71
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 72 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV--AEMVDEVG-LADKV 688
+ C Q+ + P T++E++ +F V E SV+ ++ +++ A+K
Sbjct: 71 ------ISFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKD 120
Query: 689 NIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXX 744
NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 745 XXXXTTHSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 181 KTRILVTSKMEHLKKADKILILHEGS 206
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 71
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 72 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 170
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 572 KRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADM 631
+ G + + + Q+LA+ G GAGK++ + M++G + P+ G G+
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------ 70
Query: 632 DEIRKGLGVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLAD 686
+ C Q+ + P T++E++ + + +K LE +++ A+
Sbjct: 71 ------ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAE 117
Query: 687 KVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXX 742
K NIV+ LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 743 XXXXXXTTHSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 178 ANKTRILVTSKMEHLKKADKILILHEGS 205
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYP-TDGTAFIFGKDIRSDPKA 1540
K + L+ V GE +G NG+GK+T + ++G E+Y T GT GKD+ +
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKLVEF-- 1589
R G F +E V L + V YR D++ EK+
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 1590 --DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
DLL + F SGG K++ + + +P + ILDE +G+D A + + + ++ L
Sbjct: 134 PEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 191
Query: 1648 STRQGKTAVILTTH 1661
R GK + I+ TH
Sbjct: 192 --RDGKRSFIIVTH 203
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTG 618
+ I+ LH K + L L ++ ++ A++G NG+GKST + L G TG
Sbjct: 2 LSIKDLHVSVEDK----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 57
Query: 619 DALVF-GKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVLKGVK-------- 667
+ F GK++ A E R G G+ QY + P ++ + L+ L V+
Sbjct: 58 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ--TALNAVRSYRGQETL 115
Query: 668 -----EELLESVVA--EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 720
++L+E +A +M +++ L VN+ SGG K++ + + + ++ ILDE
Sbjct: 116 DRFDFQDLMEEKIALLKMPEDL-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 721 PTSGMDPYSMRL 732
SG+D ++++
Sbjct: 172 SDSGLDIDALKV 183
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLS G + K+S+A A+ D + +LD P +D + ++ ++E
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 23/199 (11%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVA--EMVDEVG-LADKVNIVVR-- 693
C Q+ + P T++E++ +F V E SV+ ++ +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 694 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 751
LS G + K+SL A+ D+ + +LD P +D + + ++
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 752 SMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 218 SKMEHLKKADKILILHEGS 236
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 123/236 (52%), Gaps = 23/236 (9%)
Query: 1478 KRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIR-- 1535
KR + ++ +AG+ +G++G+GK+T L I+ E P++G + G++I
Sbjct: 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 73
Query: 1536 ---------SDPKAAR----RLIGYCPQFDALLEYLTVQEH-LELYARIKGVAEYRMDDV 1581
+D R RL F+ L ++TV E+ +E ++ G++++ +
Sbjct: 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLSKHDARER 132
Query: 1582 VMEKLVEFDLLKHAK-KPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
++ L + + + A+ K LSGG ++++S+A A+ +P +++ DEP++ +DP +
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
++ +L+ +GKT V++ TH M A+ + + + + G++ G P+ + FGN
Sbjct: 193 LRIMQQLA-EEGKTMVVV-THEMGFARHVSSHVIFLHQGKIEEEGDPEQV---FGN 243
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 28/148 (18%)
Query: 602 KSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCP--QYDILFPELT-VREHLE 658
KST + + L P+ G +V G+NI D+ + L V Q +L LT V +H
Sbjct: 45 KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ-LKVADKNQLRLLRTRLTMVFQHFN 103
Query: 659 MFAVLKGVKEELLESVVAEMVDEVGLAD------------KVNIVVRA-------LSGGM 699
+++ + +LE+V+ + +GL+ KV I RA LSGG
Sbjct: 104 LWSHMT-----VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDP 727
++++S+ AL + V++ DEPTS +DP
Sbjct: 159 QQRVSIARALAMEPDVLLFDEPTSALDP 186
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISG-EEYP-TDGTAFIFGKDIRSDPKA 1540
K + L+ V GE +G NG+GK+T + ++G E+Y T GT GKD+ +
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 1541 ARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYR---------MDDVVMEKLVEF-- 1589
R G F +E V L + V YR D++ EK+
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 1590 --DLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL 1647
DLL + F SGG K++ + + +P + ILDE +G+D A + + + ++ L
Sbjct: 153 PEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL 210
Query: 1648 STRQGKTAVILTTH 1661
R GK + I+ TH
Sbjct: 211 --RDGKRSFIIVTH 222
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIP-PTTG 618
+ I+ LH K + L L ++ ++ A++G NG+GKST + L G TG
Sbjct: 21 LSIKDLHVSVEDK----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG 76
Query: 619 DALVF-GKNITADMDEIRKGLGV--CPQYDILFPELTVREHLEMFAVLKGVK-------- 667
+ F GK++ A E R G G+ QY + P ++ + L+ L V+
Sbjct: 77 GTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQ--TALNAVRSYRGQETL 134
Query: 668 -----EELLESVVA--EMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDE 720
++L+E +A +M +++ L VN+ SGG K++ + + + ++ ILDE
Sbjct: 135 DRFDFQDLMEEKIALLKMPEDL-LTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 721 PTSGMDPYSMRL 732
SG+D ++++
Sbjct: 191 SDSGLDIDALKV 202
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 633
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 687
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
V LSGG ++ ++L ALI +++ILD+ TS +D
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 1456 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1511
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1512 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1570
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLK--------HAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622
+ + V ME D + + LSGG ++ +++A A+I P +
Sbjct: 119 RTPTMEEITAVAMESGAH-DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 1623 VILDEPSTGMDP----IAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQ 1667
+ILD+ ++ +D +R ++E S V+L TH ++ A+
Sbjct: 178 LILDQATSALDAGNQLRVQRLLYE-----SPEWASRTVLLITHQLSLAE 221
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
+N+ YP R + + + S+ +G +G +G+GK+T LS++ P GT
Sbjct: 376 KNVHFAYPA--RPEVPI-FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 1528 FIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA---------RIKGVAEYR 1577
+ G DIR +P R IG Q + +L ++ E++ A I+ VAE
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 1578 MDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
+ + F+ + K LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 492 NAVAFIRNFPQGFNTVVGEK--GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 549
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTH 1661
+ + E + RL G+T +++ H
Sbjct: 550 EYLVQEALDRL--MDGRTVLVIAHH 572
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
++ + +H Y R L++ + AL+G +G+GKST +S+L+ L P +G
Sbjct: 372 ALEFKNVHFAYPA-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 430
Query: 619 DALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVA 676
+ G +I + +R +G Q ILF ++ E++ A V E ++ V A
Sbjct: 431 TISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV-A 488
Query: 677 EMVDEVGL----ADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V N VV LSGG K+++++ AL+ + K+++LDE TS +D
Sbjct: 489 EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 546
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLS G + K+S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 639 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
C Q+ + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LS G + K+SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 60.5 bits (145), Expect = 9e-09, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 29/259 (11%)
Query: 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYP 1522
++ +++ YP R D V + LTF+++ GE +G NG+GK+T +++ P
Sbjct: 13 GLVQFQDVSFAYP--NRPDVLV-LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 1523 TDGTAFIFGKDIRSDPKAARRL-------IGYCPQ-FDALLEY-----LTVQEHLE--LY 1567
T G + GK + P+ R +G PQ F L+ LT + +E
Sbjct: 70 TGGQLLLDGKPL---PQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 1568 ARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDE 1627
A +K A + + E D + LSGG ++ +++A A+I P ++ILD+
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVD------EAGSQLSGGQRQAVALARALIRKPCVLILDD 180
Query: 1628 PSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSP 1687
++ +D ++ + +++ R ++ +++T H QA I + GG +R G+
Sbjct: 181 ATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA--DHILFLEGGAIREGGTH 238
Query: 1688 QHLKTRFGNFLELEVKPTE 1706
Q L + G + + P +
Sbjct: 239 QQLMEKKGCYWAMVQAPAD 257
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DM 631
R + + L TL ++ AL+G NG+GKST ++L L PT G L+ GK + +
Sbjct: 27 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 86
Query: 632 DEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV------GLA 685
+ + + Q +F +++E++ K EE+ + V G
Sbjct: 87 RYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 145
Query: 686 DKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+V+ LSGG ++ ++L ALI V+ILD+ TS +D S
Sbjct: 146 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 1479 RSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDP 1538
RSD ++ +TFS+ G +G G GK++ LS + E +G I G
Sbjct: 15 RSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHL-------ELYARIKGVAEYRMDDVVMEKLVEFDL 1591
+ Y PQ A ++ +++E++ E Y R A + D +E L D
Sbjct: 68 ------VAYVPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD--LEILPSGDR 118
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDP-IAKRFMWEVISRLSTR 1650
+ +K LSGG K+++S+A A+ + I + D+P + +D + K VI
Sbjct: 119 TEIGEK-GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 1651 QGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+ KT IL THSM+ + I +M GG++ +GS Q L R G F E
Sbjct: 178 KNKTR-ILVTHSMSYLPQVDVII-VMSGGKISEMGSYQELLARDGAFAEF 225
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 33/217 (15%)
Query: 573 RGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFG------KN 626
R + +N + ++ E ++A++G G GKS+ +S L+ + G + G +
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74
Query: 627 ITADMDEIRKGLGVCPQYDILF----PELTVREHLEMFAVLKGVKEELLESVVAEMVDEV 682
D +R+ +ILF E R ++ A+L + E+L S + E
Sbjct: 75 AWIQNDSLRE--------NILFGCQLEEPYYRSVIQACALLPDL--EILPSGDRTEIGEK 124
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXX---XX 739
G VN LSGG K+++SL A+ ++ + + D+P S +D + + ++
Sbjct: 125 G----VN-----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175
Query: 740 XXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCCGS 776
THSM ++ D I +M+ G + GS
Sbjct: 176 MLKNKTRILVTHSMSYLPQV-DVIIVMSGGKISEMGS 211
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 633
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 687
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
V LSGG ++ ++L ALI +++ILD TS +D
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 19/191 (9%)
Query: 1456 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1511
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1512 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1570
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLK--------HAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622
+ + V ME D + + LSGG ++ +++A A+I P +
Sbjct: 119 RTPTMEEITAVAMESGAH-DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 1623 VILDEPSTGMD 1633
+ILD ++ +D
Sbjct: 178 LILDNATSALD 188
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C Q ++ + T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 639 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
C Q + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 28/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ + F ++ G+ G+ GAGKT+ L MI GE P++G G+ I
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C Q ++ + T++E+ I GV+ EYR V+ +E D+ K A+K +
Sbjct: 102 SFCSQ-NSWIMPGTIKEN------IIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++ ++E
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 28/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ + + Q+LA+ G GAGK++ + M++G + P+ G G+ +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------I 101
Query: 639 GVCPQYDILFPELTVREHL-----EMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
C Q + P T++E++ + + +K LE +++ A+K NIV+
Sbjct: 102 SFCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISK------FAEKDNIVLG 154
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LSGG + ++SL A+ D+ + +LD P +D + + ++
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E + D+I I+ GS
Sbjct: 215 VTSKMEHLKKADKILILHEGS 235
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 31/251 (12%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
+N+ YP R + + + S+ +G +G +G+GK+T LS++ P GT
Sbjct: 345 KNVHFAYPA--RPEVPI-FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 1528 FIFGKDIRS-DPKAARRLIGYCPQFDALLEYLTVQEHLELYA---------RIKGVAEYR 1577
+ G DIR +P R IG Q + +L ++ E++ A I+ VAE
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 1578 MDDVVMEKLVE-FDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA 1636
+ + F+ + K LSGG K+++++A A++ +P I++LDE ++ +D
Sbjct: 461 NAVAFIRNFPQGFNTVVGEK--GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
Query: 1637 KRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 1696
+ + E + RL G+T V++ H ++ + + ++ G++ T +G
Sbjct: 519 EYLVQEALDRL--MDGRT-VLVIAHRLSTIKN-ANMVAVLDQGKI----------TEYGK 564
Query: 1697 FLELEVKPTEV 1707
EL KP +
Sbjct: 565 HEELLSKPNGI 575
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 13/178 (7%)
Query: 559 CIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTG 618
++ + +H Y R L++ + AL+G +G+GKST +S+L+ L P +G
Sbjct: 341 ALEFKNVHFAYPA-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399
Query: 619 DALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMFAV-LKGVKEELLESVVA 676
+ G +I + +R +G Q ILF ++ E++ A V E ++ V A
Sbjct: 400 TISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRV-A 457
Query: 677 EMVDEVGL----ADKVNIVVRA----LSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
E+ + V N VV LSGG K+++++ AL+ + K+++LDE TS +D
Sbjct: 458 EVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 1494 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQ--- 1550
+ GE G LG NG GKTT ++ GE +G+ ++++ Y PQ
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSV-----------TPEKQILSYKPQRIF 340
Query: 1551 --FDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKR 1608
+D TVQ++LE ++ + V ++L LL+ LSGG +
Sbjct: 341 PNYDG-----TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN---DLSGGELQ 392
Query: 1609 KLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQA 1668
KL +A + + + +LD+PS+ +D + + + I R+ TR+ K + H ++
Sbjct: 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV-TRERKAVTFIIDHDLSIHDY 451
Query: 1669 LCTRIGIMVGGQLRCIG---SPQHLKTRFGNFL-ELEV 1702
+ RI I+ G+ G SP LKT FL ELEV
Sbjct: 452 IADRI-IVFKGEPEKAGLATSPVTLKTGMNEFLRELEV 488
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 26/167 (15%)
Query: 579 VNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEI 634
VN +L T N IL +LG NG GK+T + +L G I P GD N DE+
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-----NSKVGKDEV 65
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAEM---VDEVGLADKV- 688
K Y+ F EL E L++ ++ V+ + L+ V E+ +DE G D+V
Sbjct: 66 LKRFRGKEIYN-YFKELYSNE-LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVK 123
Query: 689 ---------NIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
N LSGG ++L + +L+ ++ V I D+P+S +D
Sbjct: 124 ELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 1498 CFGFLGTNGAGKTTTLSMISGEEYPTDGTA-FIFGKDIRSDPKAARRLIGYCPQ-FDALL 1555
G LG NG GKTT L +++GE P G GKD + + Y + + L
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 1556 EYLTVQEHLELYAR-IKG--------VAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGN 1606
+ + +++E ++ +KG + E D V E L ++ K + LSGG
Sbjct: 87 KIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL---NMTNLWNKDANILSGGG 143
Query: 1607 KRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEA 1666
++L VA +++ + + I D+PS+ +D + M + I L + VI+ H +
Sbjct: 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK---YVIVVDHDLIVL 200
Query: 1667 QALCTRIGIMVG 1678
L I I+ G
Sbjct: 201 DYLTDLIHIIYG 212
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 647
E +I+ +LG NG GK+T +LVG I G ++T + ++ L PQ +
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEG-------SVTPE----KQILSYKPQR--I 339
Query: 648 FPEL--TVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
FP TV+++LE K+ L S E+ + L + V LSGG +KL
Sbjct: 340 FPNYDGTVQQYLE-----NASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKL 394
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
+ L ++ + +LD+P+S +D
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLD 417
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTD-GTAFIFGKDIRSDPKAA 1541
K + +TF ++ G+ +G G+GKTT ++++ Y D G + G DIR +++
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDRGQILVDGIDIRKIKRSS 426
Query: 1542 -RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFD-LLKHAKKPS 1599
R IG Q D +L TV+E+L+ Y G + + + KL D +KH +
Sbjct: 427 LRSSIGIVLQ-DTILFSTTVKENLK-YGN-PGATDEEIKEAA--KLTHSDHFIKHLPEGY 481
Query: 1600 FT--------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR----FMWEVISRL 1647
T LS G ++ L++ A + +P I+ILDE ++ +D ++ MW+++
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--- 538
Query: 1648 STRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 1700
+GKT++I+ H +N + I ++ G++ +G L + G + EL
Sbjct: 539 ---EGKTSIII-AHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 117/272 (43%), Gaps = 18/272 (6%)
Query: 532 CAFALDACEPVVEAISLDMKQQEVDGRCIQIRKLH------KVYATKRGNCCAVNSLQLT 585
AL + E + E LD+++++ D +++R++ V+ + + +
Sbjct: 320 IQMALASAERIFEI--LDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFH 377
Query: 586 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQY 644
+ Q +AL+G G+GK+T +++L+ G LV G +I +R +G+ Q
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQD 437
Query: 645 DILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEV--GLADKVNIVV----RALSGG 698
ILF TV+E+L+ + EE+ E+ D L + V+ LS G
Sbjct: 438 TILFST-TVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEE 758
++ L++ A + + K++ILDE TS +D + + H ++ +
Sbjct: 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN 555
Query: 759 LGDRIAIMANGSLKCCGSSLFLKHQYGVGYTL 790
D I ++ +G + G L + G Y L
Sbjct: 556 -ADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 560 IQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD 619
I+ +H YA R + + T+ Q LAL+G +GAGKST + +L ++G
Sbjct: 54 IEFENVHFSYADGRET---LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 620 ALVFGKNIT-ADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEM 678
+ G++I+ +R +GV PQ +LF + T+ +++ V G E + A +
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 679 VDEV-----GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMR 731
D + G +V LSGG K+++++ ++ +++LDE TS +D + R
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 1480 SDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPK 1539
+D + + ++F+V G+ +G +GAGK+T L ++ + G I G+DI +
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1540 AA-RRLIGYCPQFDALLEYLTVQEHLELYARIKG----VAEYRMDDVVMEKLVEF--DLL 1592
A+ R IG PQ D +L T+ +++ Y R+ V + + ++ F
Sbjct: 124 ASLRSHIGVVPQ-DTVLFNDTIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYR 181
Query: 1593 KHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
+ LSGG K+++++A ++ P I++LDE ++ +D +R + ++++ +
Sbjct: 182 TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR- 240
Query: 1653 KTAVILTTHSM----NEAQALCTRIGIMV 1677
I+ H + N Q L + G +V
Sbjct: 241 --TTIVVAHRLSTVVNADQILVIKDGCIV 267
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I+GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAE---MVDEVGLADKVNIVVR 693
C Q+ + P T++E+ +++GV E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E D+I I+ GS
Sbjct: 216 VTSKMEHLRKADKILILHQGS 236
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 1440 LDLNEDIDVQVERNRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECF 1499
LD ++ D E RV+ + + + RN+ YPG D A+ ++ + AG+
Sbjct: 322 LDSEQEKD---EGKRVIERATGD--VEFRNVTFTYPG---RDVP-ALRNINLKIPAGKTV 372
Query: 1500 GFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAA-RRLIGYCPQFDALLEYL 1558
+G +G+GK+T S+I+ +G + G D+R A+ R + Q L
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431
Query: 1559 TVQEHLELYARIKGVAEYRMDDVV-----MEKLVEFD--LLKHAKKPSFTLSGGNKRKLS 1611
TV ++ YAR + + ++++ M+ + + D L + LSGG +++++
Sbjct: 432 TVANNIA-YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 1612 VAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
+A A++ D PI+ILDE ++ +D ++R + + L ++ +T++++
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVI 535
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 548 LDMKQQEVDGRCIQIR-----KLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAG 601
LD +Q++ +G+ + R + V T G + A+ ++ L + + +AL+G +G+G
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 602 KSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMF 660
KST S++ G+ L+ G ++ + +R + + Q LF + TV ++
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440
Query: 661 AVLKGVKEELLESV-VAEMVDEVGLADK-VNIVVRA----LSGGMKRKLSLGIALIGDSK 714
+ +E++ E+ +A +D + D ++ V+ LSGG ++++++ AL+ DS
Sbjct: 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500
Query: 715 VVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCC 774
++ILDE TS +D S R H + E+ D I ++ +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEIVVVEDGVIVER 559
Query: 775 GSSLFLKHQYGV 786
G+ L GV
Sbjct: 560 GTHNDLLEHRGV 571
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 1468 RNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTA 1527
RN+ YPG + A+ ++ + AG+ +G +G+GK+T S+I+ +G
Sbjct: 345 RNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400
Query: 1528 FIFGKDIRSDPKAA-RRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV---- 1582
+ G D+R A+ R + Q L TV ++ YAR + + ++++
Sbjct: 401 LMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIEEAARMAY 458
Query: 1583 -MEKLVEFD--LLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRF 1639
M+ + + D L + LSGG ++++++A A++ D PI+ILDE ++ +D ++R
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 1640 MWEVISRLSTRQGKTAVIL 1658
+ + L ++ +T++++
Sbjct: 519 IQAALDEL--QKNRTSLVI 535
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 548 LDMKQQEVDGRCIQIR-----KLHKVYATKRG-NCCAVNSLQLTLYENQILALLGHNGAG 601
LD +Q++ +G+ + R + V T G A+ ++ L + + +AL+G +G+G
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 602 KSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRKGLGVCPQYDILFPELTVREHLEMF 660
KST S++ G L+ G ++ + +R + + Q LF + TV ++
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440
Query: 661 AVLKGVKEELLESV-VAEMVDEVGLADK-VNIVVRA----LSGGMKRKLSLGIALIGDSK 714
+ +E++ E+ +A +D + D ++ ++ LSGG ++++++ AL+ DS
Sbjct: 441 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500
Query: 715 VVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTHSMDEAEELGDRIAIMANGSLKCC 774
++ILDE TS +D S R H + E+ D I ++ +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVER 559
Query: 775 GSSLFLKHQYGV 786
G+ L Q+GV
Sbjct: 560 GTHSELLAQHGV 571
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----ISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 27/201 (13%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVK--EELLESVVAE---MVDEVGLADKVNIVVR 693
C Q+ + P T++E+ ++ GV E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKEN-----IISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 694 ----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXT 749
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 750 THSMDEAEELGDRIAIMANGS 770
S E D+I I+ GS
Sbjct: 216 VTSKMEHLRKADKILILHQGS 236
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 575 NCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDE 633
N + L TLY ++ AL+G NG+GKST ++L L PT G L+ G+ + D
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEEL----LESVVAEMVD--EVGLADK 687
+ + Q +LF + RE++ EE+ +ES + + G +
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 688 VNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
V L+ G ++ ++L ALI +++ILD TS +D
Sbjct: 150 VGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 1456 LSGSVD----NAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTT 1511
LSGS+ ++ +++ YP + +V + LTF++ G+ +G NG+GK+T
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYP--NHPNVQV-LQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 1512 TLSMISGEEYPTDGTAFIFGKD-IRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI 1570
+++ PT G + G+ ++ D + Q + LL + +E++ Y
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ-EPLLFGRSFRENIA-YGLT 118
Query: 1571 KGVAEYRMDDVVMEKLVEFDLLK--------HAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622
+ + V ME D + + L+ G ++ +++A A+I P +
Sbjct: 119 RTPTMEEITAVAMESGAH-DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRL 177
Query: 1623 VILDEPSTGMD 1633
+ILD ++ +D
Sbjct: 178 LILDNATSALD 188
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 693
C Q+ + P T++E++ +F V E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 694 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 751
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 752 SMDEAEELGDRIAIMANGS 770
S E D+I I+ GS
Sbjct: 218 SKMEHLRKADKILILHQGS 236
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 27/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E++ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKENI-----IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 155
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 201
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 693
C Q+ + P T++E++ +F V E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI-IFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 694 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 751
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 752 SMDEAEELGDRIAIMANGS 770
S E D+I I+ GS
Sbjct: 218 SKMEHLRKADKILILHQGS 236
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.9 bits (128), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFD 1552
++ GE G +G NG GKTT + ++G E PT+G I D A Y PQ+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGK-------IEWDLTVA-----YKPQYI 356
Query: 1553 ALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSV 1612
TV EL ++I ++ + E L ++ + LSGG +++++
Sbjct: 357 KADYEGTV---YELLSKIDA-SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 1613 AIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 588 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGDALVF--------GKNITADMDEIRKGL 638
E ++ ++G NG GKST + +L G LIP GD + G + ++++ G
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 639 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRAL 695
V PQY L P+ + +E+ LK E + E+V + L + + ++ L
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIEL---LKKADE---TGKLEEVVKALELENVLEREIQHL 159
Query: 696 SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
SGG +++++ AL+ ++ DEP+S +D
Sbjct: 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 647
+ +++ ++G NG GK+T + L G+ PT G I D+ K PQY
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKXLAGVEEPTEG-------KIEWDLTVAYK-----PQYIKA 358
Query: 648 FPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKLSL 705
E TV E +L + L S E++ +G+ D + V LSGG +++++
Sbjct: 359 DYEGTVYE------LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 706 GIALIGDSKVVILDEPTSGMD 726
L+ D+ + +LDEP++ +D
Sbjct: 413 AATLLRDADIYLLDEPSAYLD 433
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 41/262 (15%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDIRS-----DP 1538
V+ G G +G NG GK+T + +++G+ P DG F G ++++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVV----MEKLVEFDLLKH 1594
R ++ PQ+ L+ + +EL + ++++VV +E ++E ++ +H
Sbjct: 104 GEIRPVVK--PQYVDLIPKAVKGKVIELLKKADETG--KLEEVVKALELENVLEREI-QH 158
Query: 1595 AKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKT 1654
LSGG +++++A A++ + DEPS+ +D + I RLS +GK+
Sbjct: 159 -------LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS-EEGKS 210
Query: 1655 AVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPT 1705
V++ H + L I ++ G G P+ + FL + +P
Sbjct: 211 -VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPY 269
Query: 1706 EVSSVDLEDLCQIIQERVFDIP 1727
E+ + +I +E + P
Sbjct: 270 EIKFTKTGERVEIERETLVTYP 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1551
++ GE G +G NG GKTT + M++G E PT+G + D A Y PQ
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVA-----YKPQ- 410
Query: 1552 DALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
Y+ + +Y + + +++ E L ++ + LSGG ++
Sbjct: 411 -----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 465
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
+++A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 466 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 586 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYD 645
+ + +++ ++G NG GK+T + ML G+ PT G + D+ K PQY
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVAYK-----PQYI 412
Query: 646 ILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
E TV + +L + L S E++ +G+ D + V LSGG +++
Sbjct: 413 KAEYEGTV------YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
++ L+ D+ + +LDEP++ +D
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLD 489
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 33/258 (12%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDI-----RSDP 1538
V+ G G +G NG GKTT + +++G+ P D F G ++ R
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1598
R ++ PQ+ LL + EL ++ V ++ +E D H
Sbjct: 160 GEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---- 213
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
LSGG +++++A A++ DEPS+ +D + + VI RL+ +GK AV++
Sbjct: 214 --QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGK-AVLV 269
Query: 1659 TTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPTEVSS 1709
H + L I ++ G G P+ + FL+ + +P E+
Sbjct: 270 VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRF 329
Query: 1710 VDLEDLCQIIQERVFDIP 1727
L + + +E + + P
Sbjct: 330 TKLSERVDVERETLVEYP 347
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 588 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGDALVF--------GKNITADMDEIRKGL 638
+ ++ ++G NG GK+T + +L G LIP D + G + + ++ G
Sbjct: 102 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 161
Query: 639 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKV 688
V PQY L P+ +KG ELL+ V DEVG +
Sbjct: 162 IRPVVKPQYVDLLPK-----------AVKGKVRELLKKV-----DEVGKFEEVVKELELE 205
Query: 689 NIVVRAL---SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
N++ R L SGG +++++ AL+ + DEP+S +D
Sbjct: 206 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 1492 SVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQF 1551
++ GE G +G NG GKTT + M++G E PT+G + D A Y PQ
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVA-----YKPQ- 424
Query: 1552 DALLEYLTVQEHLELYARIKGVAEYRMDD--VVMEKLVEFDLLKHAKKPSFTLSGGNKRK 1609
Y+ + +Y + + +++ E L ++ + LSGG ++
Sbjct: 425 -----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQR 479
Query: 1610 LSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
+++A ++ D I +LDEPS +D + + I L + KTA+++
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 586 LYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYD 645
+ + +++ ++G NG GK+T + ML G+ PT G + D+ K PQY
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVAYK-----PQYI 426
Query: 646 ILFPELTVREHLEMFAVLKGVKEELLES--VVAEMVDEVGLADKVNIVVRALSGGMKRKL 703
E TV + +L + L S E++ +G+ D + V LSGG +++
Sbjct: 427 KAEYEGTV------YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
Query: 704 SLGIALIGDSKVVILDEPTSGMD 726
++ L+ D+ + +LDEP++ +D
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLD 503
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 33/258 (12%)
Query: 1493 VQAGECFGFLGTNGAGKTTTLSMISGEEYPT--------DGTAFIF-GKDI-----RSDP 1538
V+ G G +G NG GKTT + +++G+ P D F G ++ R
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKP 1598
R ++ PQ+ LL + EL ++ V ++ +E D H
Sbjct: 174 GEIRPVVK--PQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELH---- 227
Query: 1599 SFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVIL 1658
LSGG +++++A A++ DEPS+ +D + + VI RL+ +GK AV++
Sbjct: 228 --QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGK-AVLV 283
Query: 1659 TTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTRFGNFLE-------LEVKPTEVSS 1709
H + L I ++ G G P+ + FL+ + +P E+
Sbjct: 284 VEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRF 343
Query: 1710 VDLEDLCQIIQERVFDIP 1727
L + + +E + + P
Sbjct: 344 TKLSERVDVERETLVEYP 361
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 588 ENQILALLGHNGAGKSTTISMLVG-LIPPTTGDALVF--------GKNITADMDEIRKGL 638
+ ++ ++G NG GK+T + +L G LIP D + G + + ++ G
Sbjct: 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 175
Query: 639 ---GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVG-------LADKV 688
V PQY L P+ +KG ELL+ V DEVG +
Sbjct: 176 IRPVVKPQYVDLLPK-----------AVKGKVRELLKKV-----DEVGKFEEVVKELELE 219
Query: 689 NIVVRAL---SGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
N++ R L SGG +++++ AL+ + DEP+S +D
Sbjct: 220 NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 571 TKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA- 629
T+ GN N + ++ Q + LLG G+GKST +S + L+ T G+ + G + +
Sbjct: 30 TEGGNAILEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI 87
Query: 630 DMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL----- 684
+++ RK GV PQ +F T R++L+ A + + ++ DEVGL
Sbjct: 88 TLEQWRKAFGVIPQKVFIFSG-TFRKNLDPNAAHS-------DQEIWKVADEVGLRSVIE 139
Query: 685 --ADKVNIVVR----ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
K++ V+ LS G K+ + L +++ +K+++LDEP++ +DP + ++
Sbjct: 140 QFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 145/329 (44%), Gaps = 55/329 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPKAARRL 1544
+ +++FS+ G+ G LG G+GK+T LS T+G I G S + R+
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 1545 IGYCPQFDALLEYLTVQEHLELYARIKGVAEYRM-DDVVMEKLVEFDLLKHAKKPSFTL- 1602
G PQ + T +++L+ A +++ D+V + ++E + K F L
Sbjct: 96 FGVIPQ-KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIE----QFPGKLDFVLV 150
Query: 1603 ------SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAV 1656
S G+K+ + +A +++ I++LDEPS +DP+ +++I R +
Sbjct: 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT----YQIIRRTLKQAFADCT 206
Query: 1657 ILTTHSMNEAQALCTRIGIMVGGQLRC-------------------IGSPQHLKTRFGNF 1697
++ + EA C + ++ ++R IGSP+ NF
Sbjct: 207 VILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKM------NF 260
Query: 1698 LELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSEN---ATA 1754
L ++V T + V +E L +++V+ +P + R + + +G I E+ +
Sbjct: 261 LPVKVTATAIDQVQVE-LPMPNRQQVW-LPVESRDVQVGANMSLG----IRPEHLLPSDI 314
Query: 1755 AEISLSQEMLLIVGRWLGNEERIKTLISS 1783
A++ L E+ ++ LGNE +I I S
Sbjct: 315 ADVILEGEVQVV--EQLGNETQIHIQIPS 341
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 28/166 (16%)
Query: 1486 VHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLI 1545
+ ++ +++ GE G+ G+GKT+ L +I GE ++G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 1546 GYCPQFDALLEYLTVQEHLELYARIKGVA--EYRMDDVVMEKLVEFDLLKHAKKPS---- 1599
+C QF ++ T++E+ I GV+ EYR VV ++ D+ K A++ +
Sbjct: 102 SFCSQFSWIMPG-TIKEN------IIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 154
Query: 1600 ---FTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWE 1642
TLSGG + ++S+A A+ D + +LD P +D + ++E
Sbjct: 155 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 24/199 (12%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGL 638
+ ++ L + + ++LA+ G G+GK++ + +++G + + G G+ +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------------V 101
Query: 639 GVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAE---MVDEVGLADKVNIVVR-- 693
C Q+ + P T++E++ + E +SVV D A++ N V+
Sbjct: 102 SFCSQFSWIMPG-TIKENI----IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 694 --ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTTH 751
LSGG + ++SL A+ D+ + +LD P +D ++ ++
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 752 SMDEAEELGDRIAIMANGS 770
S E D+I I+ GS
Sbjct: 217 SKMEHLRKADKILILHQGS 235
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 23/238 (9%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGE-EYPTD-GTAFIFGKDI--RS 1536
D + + + V GE +G NGAGK+T +++G+ EY + G + G++I S
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 1537 DPKAARRLIGYCPQFDALLEYLTVQEHLELYARIK-----GVAEYRMDDVVMEKLVEFDL 1591
+ AR+ + Q+ + +T+ L L + K GVAE+ +L+++D
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 1592 LKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQ 1651
++ + SGG K++ + ++ +P +LDE +G+D A + + ++ + R
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM--RG 191
Query: 1652 GKTAVILTTHS---MNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 1706
++ TH +N Q ++ +M+ G++ G P+ LELE K E
Sbjct: 192 PNFGALVITHYQRILNYIQP--DKVHVMMDGRVVATGGPELA-------LELEAKGYE 240
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 37/177 (20%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTT---GDALVFGKNI--TADMDE 633
+ + L + + ++ AL+G NGAGKST +L G P T G+ L+ G+NI + +
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG-DPEYTVERGEILLDGENILELSPDER 77
Query: 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVR 693
RKGL + QY + P +T+ L + ++ A++ EVG+A+ V +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRL-------------ALQAKLGREVGVAEFWTKVKK 124
Query: 694 AL------------------SGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRL 732
AL SGG K++ + L+ + +LDE SG+D ++++
Sbjct: 125 ALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1545 IGYCPQFDA--LLEYLTVQEHLELYARIKGVAEY----------RMDDVVME--KLVEFD 1590
G F L+ +TV E+L + G + + +++V + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1591 LLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
L H + + LSGG + + + A++ +P ++++DEP G+ P ++ + L
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
+ G T +I+ H ++ + +M GQ+ G
Sbjct: 202 K-GITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 634 IRKGLGVCPQYDILFP--ELTVREHLEMFAVLKGV-------------KEELLESVVAEM 678
G+ + P E+TV E+L + + G KEE + ++
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
++ + L+ + LSGG + + +G AL+ + K++++DEP +G+ P
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 1446 IDVQVER-NRVLSGSVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGT 1504
+D++ ER N N + ++++ Y G + K A+ ++FS+ G+ +G
Sbjct: 322 MDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE----KPALSHVSFSIPQGKTVALVGR 377
Query: 1505 NGAGKTTTLSMISGEEYPTD-GTAFIFGKDIRSDPKAA--RRLIGYCPQ----------- 1550
+G+GK+T ++ + Y D G+ + G D+R D K RR Q
Sbjct: 378 SGSGKSTIANLFT-RFYDVDSGSICLDGHDVR-DYKLTNLRRHFALVSQNVHLFNDTIAN 435
Query: 1551 ---FDALLEYLTVQEHLELYARIKGVAEY------RMDDVVMEKLVEFDLLKHAKKPSFT 1601
+ A EY +E +E AR E+ +D V+ E +
Sbjct: 436 NIAYAAEGEY--TREQIEQAARQAHAMEFIENMPQGLDTVIGEN-------------GTS 480
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG ++++++A A++ D P++ILDE ++ +D ++R + + L Q V++ H
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL---QKNKTVLVIAH 537
Query: 1662 SMN 1664
++
Sbjct: 538 RLS 540
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636
A++ + ++ + + +AL+G +G+GKST ++ +G + G ++ + +R+
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV----VAEMVDEV--GLADKVNI 690
+ Q LF + T+ ++ A + +E++ ++ E ++ + GL +
Sbjct: 418 HFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 691 VVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTWQXXXXXXXXXXXXXTT 750
+LSGG ++++++ AL+ D+ V+ILDE TS +D S R
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
Query: 751 HSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785
H + E+ D I ++ G + G L Q G
Sbjct: 537 HRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQDG 570
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 1483 KVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542
K + +T +++ G F G NG GKTT L IS P G G I +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----VK 77
Query: 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTL 1602
I + P+ + ++V+++L+ A + GV + + +M+ L ++L KK L
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDALESVEVLDLKKKLG-EL 134
Query: 1603 SGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
S G R++ +A ++ + I +LD+P +D +K + + I + +G
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 582 LQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVC 641
+ +T+ + ++ G NG GK+T + + + P G+ + G IT +++ +
Sbjct: 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFL 83
Query: 642 PQYDILFPELTVREHLEMFAVLKGV---KEELLESVVAEMVDEVGLADKVNIVVRALSGG 698
P+ I+ +++V ++L+ A L GV K E+++++ E V+ + L K+ LS G
Sbjct: 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL--ESVEVLDLKKKLG----ELSQG 137
Query: 699 MKRKLSLGIALIGDSKVVILDEPTSGMD 726
R++ L L+ ++++ +LD+P +D
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 589 NQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNI-TADMDEIRKGLGVCPQYDIL 647
N I+A G +G GKST S+L PT G+ + G+ I ++ R +G Q D
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSA 86
Query: 648 FPELTVREHLEMFAVLKGVKEELLE--------SVVAEMVDEVGLADKVNIVVRALSGGM 699
T+RE+L E+L + S V M D+ L +V +SGG
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ--LNTEVGERGVKISGGQ 144
Query: 700 KRKLSLGIALIGDSKVVILDEPTSGMDPYS 729
+++L++ A + + K+++LDE T+ +D S
Sbjct: 145 RQRLAIARAFLRNPKILMLDEATASLDSES 174
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 1481 DAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRS-DPK 1539
D++ + ++F Q F G +G GK+T S++ PT G I G+ I + +
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 1540 AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAE---YRMDDVVMEKLVEF---DLLK 1593
R IG+ Q A++ T++E+L E +D VE L
Sbjct: 73 NWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131
Query: 1594 HAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+ +SGG +++L++A A + +P I++LDE + +D ++ + + + L +G+
Sbjct: 132 EVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--MKGR 189
Query: 1654 TAVIL 1658
T +++
Sbjct: 190 TTLVI 194
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 578 AVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637
A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 638 LGVCPQYDILFP--ELTVREHLEMFAVLKG-------------VKEELLESVVAEMVDEV 682
G+ + P E+TV E+L + + G KEE + ++++ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 683 GLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
L+ + LSGG + + +G AL+ + K++++D+P +G+ P
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1545 IGYCPQFDA--LLEYLTVQEHL-------------ELYARIKGVAEYRMDDVVMEKLVEF 1589
G F L+ +TV E+L L+ + E M + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF-KILEF 140
Query: 1590 DLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
L H + + LSGG + + + A++ +P ++++D+P G+ P ++ + L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 1649 TRQGKTAVILTTHSMNEAQALCTRIGIMVGGQL 1681
+ G T +I+ H ++ + +M GQ+
Sbjct: 201 AK-GITFLII-EHRLDIVLNYIDHLYVMFNGQI 231
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 1485 AVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRL 1544
A+ ++ SV G+ +G NG+GK+T +++I+G +G + KDI + A
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 1545 IGYCPQFDA--LLEYLTVQEHLELYARIKGVAEY----------RMDDVVME--KLVEFD 1590
G F L+ +TV E+L + G + + +++V + K++EF
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 1591 LLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLST 1649
L H + + LSGG + + + A++ +P ++++DEP G+ P ++ + L
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1650 RQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG 1685
+ G T +I+ H ++ + +M GQ+ G
Sbjct: 202 K-GITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 574 GNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDE 633
G A++ + +++ + + ++G NG+GKST I+++ G + G K+IT
Sbjct: 18 GEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 77
Query: 634 IRKGLGVCPQYDILFP--ELTVREHLEMFAVLKGV-------------KEELLESVVAEM 678
G+ + P E+TV E+L + + G KEE + ++
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 679 VDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDP 727
++ + L+ + LSGG + + +G AL+ + K++++DEP +G+ P
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1547
L+ V+AGE +G NGAGK+T L+ ++G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1548 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1599
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1600 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
LSGG +++ +A ++ P +++LD+P +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS--QQ 182
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1703
A+++++H +N R ++ GG++ G +P +L +G NF L+++
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIE 240
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1547
L+ V+AGE +G NGAGK+T L+ ++G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1548 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1599
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1600 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
LSGG +++ +A ++ P +++LD+P +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS--QQ 182
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1703
A+++++H +N R ++ GG++ G +P +L +G NF L+++
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFRRLDIE 240
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 39/238 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1547
L+ V+AGE +G NGAGK+T L+ +G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1548 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1599
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1600 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
LSGG +++ +A ++ P +++LDEP +D + + +++S LS Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS--QQ 182
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1703
A++ ++H +N R ++ GG+ G +P +L +G NF L+++
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIE 240
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 43/218 (19%)
Query: 1474 YPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKD 1533
YP K++ ++ E +G NG GKTT + +++G P +G +D
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QD 409
Query: 1534 IRSDPK--AARRLIGYCPQFDALLEYLTVQEHLELYARIKG-----------VAEYRMDD 1580
I PK + + P+F + L + +I+G V R+DD
Sbjct: 410 I---PKLNVSMKPQKIAPKFPGTVRQL-------FFKKIRGQFLNPQFQTDVVKPLRIDD 459
Query: 1581 VVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
++ +++ +H LSGG +++++ +A+ I ++DEPS +D +
Sbjct: 460 IIDQEV------QH-------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIIC 506
Query: 1641 WEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678
+VI R KTA I+ H A L ++ + G
Sbjct: 507 SKVIRRFILHNKKTAFIV-EHDFIMATYLADKVIVFEG 543
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 588 ENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKGLGVCPQYDIL 647
+++IL ++G NG GK+T I +L G + P G + ++ K + P+
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-------PKLNVSMKPQKIAPK---- 425
Query: 648 FPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGI 707
FP TVR+ F ++G + L ++V + + D ++ V+ LSGG +++++ +
Sbjct: 426 FPG-TVRQLF--FKKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 708 ALIGDSKVVILDEPTSGMD 726
AL + + ++DEP++ +D
Sbjct: 481 ALGIPADIYLIDEPSAYLD 499
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 578 AVNSLQL----TLYENQILALLGHNGAGKSTTISMLVGLIPPTTGD-------------- 619
+ NS +L T Q+L L+G NG GKST + +L G P G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 620 -----ALVFGKNITADMDEIRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESV 674
F K + D+ I K PQY P ++ ++ L ++ E
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIK-----PQYVDNIPR-AIKGPVQKVGELLKLRMEKSPED 201
Query: 675 VAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMD 726
V + + L + + + LSGG ++ ++G++ + ++ V + DEP+S +D
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 39/210 (18%)
Query: 1494 QAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDA 1553
+ G+ G +GTNG GK+T L +++G++ P G DP + +I Y +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--------DDPPEWQEIIKYF-RGSE 151
Query: 1554 LLEYLTVQEHLELYARIKGVAEYRMDDV------VMEKLVEFDLLKHAKKPSFT------ 1601
L Y T ++ A IK +Y +D++ ++K+ E L+ K P
Sbjct: 152 LQNYFTKMLEDDIKAIIK--PQY-VDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI 208
Query: 1602 -------------LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLS 1648
LSGG ++ ++ ++ + + + + DEPS+ +D + +R I R S
Sbjct: 209 LQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD-VKQRLNAAQIIR-S 266
Query: 1649 TRQGKTAVILTTHSMNEAQALCTRIGIMVG 1678
VI H ++ L + I+ G
Sbjct: 267 LLAPTKYVICVEHDLSVLDYLSDFVCIIYG 296
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 1489 LTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGY- 1547
L+ V+AGE +G NGAGK+T L+ +G T G I + +A +L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGX---TSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 1548 -------CPQFDA-LLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPS 1599
P F + YLT+ +H + + ++DV ++ L + +
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-------LNDVAGALALDDKLGRSTNQ-- 126
Query: 1600 FTLSGGNKRKLSVAIAMIGDPP-------IVILDEPSTGMDPIAKRFMWEVISRLSTRQG 1652
LSGG +++ +A ++ P +++LDEP +D + + +++S L Q
Sbjct: 127 --LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC--QQ 182
Query: 1653 KTAVILTTHSMNEAQALCTRIGIMVGGQLRCIG------SPQHLKTRFG-NFLELEVK 1703
A++ ++H +N R ++ GG+ G +P +L +G NF L+++
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNFRRLDIE 240
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 634
+N QL L + + G NG GKST + + V P V+ + D+D
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVY---VEHDIDGT 507
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 693
V D +F G KE + + ++ E G D+ + + +
Sbjct: 508 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEMIAMPIS 547
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAW 586
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 1443 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1500
N D++ + L G + AI+ + N+ YPG +K + + F
Sbjct: 648 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG----TSKPQITDINFQCSLSSRIA 703
Query: 1501 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1528
+G NGAGK+T +++++GE PT G +
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 1482 AKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEE---YPTDGTAFIFGKDIRSDP 1538
AK+ ++ ++ +G G NG GK+T + I+ + +PT
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC----------- 495
Query: 1539 KAARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHA-KK 1597
R + D +V + + GV + + +KL+EF
Sbjct: 496 ----RTVYVEHDIDGTHSDTSVLD----FVFESGVG---TKEAIKDKLIEFGFTDEMIAM 544
Query: 1598 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 545 PISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGD 619
+A++G NGAGKST I++L G + PT+G+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 956
Query: 1662 SMNEAQALCTRIGIMVGGQLRCIG 1685
S + L + + G++ G
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 634
+N QL L + + G NG GKST + V P V+ + D+D
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVY---VEHDIDGT 507
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 693
V D +F G KE + + ++ E G D+ + +
Sbjct: 508 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEXIAXPIS 547
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAW 586
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 1443 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1500
N D++ + L G + AI+ + N YPG +K + + F
Sbjct: 648 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPG----TSKPQITDINFQCSLSSRIA 703
Query: 1501 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1528
+G NGAGK+T +++++GE PT G +
Sbjct: 704 VIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1580 DVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ + +KL+EF P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 526 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 582
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGD 619
+A++G NGAGKST I++L G + PT+G+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGE 729
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 937
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 956
Query: 1662 SMNEAQALCTRIGIMVGGQ 1680
S + L + + G+
Sbjct: 957 SAEFTKNLTEEVWAVKDGR 975
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 30/161 (18%)
Query: 579 VNSLQLTLYENQILALLGHNGAGKSTTISML----VGLIPPTTGDALVFGKNITADMDEI 634
+N QL L + + G NG GKST + V P V+ + D+D
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVY---VEHDIDGT 501
Query: 635 RKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADK-VNIVVR 693
V D +F G KE + + ++ E G D+ + +
Sbjct: 502 HSDTSV---LDFVFESGV------------GTKEAIKDKLI-----EFGFTDEXIAXPIS 541
Query: 694 ALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSMRLTW 734
ALSGG K KL+L A++ ++ +++LDEPT+ +D ++ + W
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAW 580
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 1443 NEDIDVQVERNRVLSG--SVDNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFG 1500
N D++ + L G + AI+ + N YPG +K + + F
Sbjct: 642 NTDLEFKFPEPGYLEGVKTKQKAIVKVTNXEFQYPG----TSKPQITDINFQCSLSSRIA 697
Query: 1501 FLGTNGAGKTTTLSMISGEEYPTDGTAF 1528
+G NGAGK+T +++++GE PT G +
Sbjct: 698 VIGPNGAGKSTLINVLTGELLPTSGEVY 725
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1580 DVVMEKLVEFDLLKHA-KKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPI 1635
+ + +KL+EF P LSGG K KL++A A++ + I++LDEP+ +D +
Sbjct: 520 EAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV 576
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 592 LALLGHNGAGKSTTISMLVGLIPPTTGD 619
+A++G NGAGKST I++L G + PT+G+
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELLPTSGE 723
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 692 VRALSGGMKRKLSLGIALIGDSKVVILDEPTSGMDPYSM 730
+R LSGG K KL L +++LDEPT+ +D S+
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL 931
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1602 LSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTH 1661
LSGG K KL +A P +++LDEP+ +D R +S+ + ++ + VI+ TH
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD----RDSLGALSK-ALKEFEGGVIIITH 950
Query: 1662 SMNEAQALCTRIGIMVGGQ 1680
S + L + + G+
Sbjct: 951 SAEFTKNLTEEVWAVKDGR 969
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 1558 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1616
+TV++ L+ +A I + +E L + L +P+ TLSGG +++ +A +
Sbjct: 505 MTVEDALDFFASIPKIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 558
Query: 1617 ---IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1671
+ ILDEP+TG+ D IA+ + +V+ RL G T V++ H+++ +
Sbjct: 559 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDNGDT-VLVIEHNLDVIKTADY 614
Query: 1672 RI-----GIMVGGQLRCIGSPQHL 1690
I G GGQ+ +G+P+ +
Sbjct: 615 IIDLGPEGGDRGGQIVAVGTPEEV 638
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 1558 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1616
+TV++ L+ +A I + +E L + L +P+ TLSGG +++ +A +
Sbjct: 807 MTVEDALDFFASIPKIKRK------LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 860
Query: 1617 ---IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCT 1671
+ ILDEP+TG+ D IA+ + +V+ RL G T V++ H+++ +
Sbjct: 861 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDNGDT-VLVIEHNLDVIKTADY 916
Query: 1672 RI-----GIMVGGQLRCIGSPQHL 1690
I G GGQ+ +G+P+ +
Sbjct: 917 IIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 1597 KPSFTLSGGNKRKLSVAIAM---IGDPPIVILDEPSTGM--DPIAKRFMWEVISRLSTRQ 1651
+P+ TLSGG +++ +A + + ILDEP+TG+ D IA+ + +V+ RL
Sbjct: 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRL-VDN 897
Query: 1652 GKTAVILTTHSMNEAQALCTRI-----GIMVGGQLRCIGSPQHL 1690
G T V++ H+++ + I G GGQ+ +G+P+ +
Sbjct: 898 GDT-VLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 1558 LTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDL-LKHAKKPSFTLSGGNKRKLSVAIAM 1616
++++E E + I GV Y + LV+ L +P+ TLSGG +++ +A +
Sbjct: 825 MSIEEAAEFFEPIAGVHRY------LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASEL 878
Query: 1617 IGDPP---IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMN 1664
+ ILDEP+TG+ R + VI+ L +G T VI+ H+++
Sbjct: 879 QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGL-VDKGNT-VIVIEHNLD 927
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 1597 KPSFTLSGGNKRKLSVAIAMIGDPP---IVILDEPSTGMDPIAKRFMWEVISRLSTRQGK 1653
+P+ TLSGG +++ +A + + ILDEP+ G+ R + EV+ RL R G
Sbjct: 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GN 859
Query: 1654 TAVILTTHSMNEAQALCTRI-----GIMVGGQLRCIGSPQHL 1690
T VI+ H+++ + I G GG + G+P+ +
Sbjct: 860 T-VIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
>pdb|1WKI|A Chain A, Solution Structure Of Ribosomal Protein L16 From Thermus
Thermophilus Hb8
pdb|2J01|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|P Chain P, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|P Chain P, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|P Chain P, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2V47|Q Chain Q, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|Q Chain Q, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|Q Chain Q, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|Q Chain Q, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|Q Chain Q, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|Q Chain Q, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|Q Chain Q, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|Q Chain Q, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|Q Chain Q, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|Q Chain Q, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|Q Chain Q, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|Q Chain Q, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|Q Chain Q, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|Q Chain Q, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|Q Chain Q, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|Q Chain Q, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|Q Chain Q, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|Q Chain Q, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|P Chain P, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|P Chain P, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|P Chain P, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|P Chain P, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|Q Chain Q, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|Q Chain Q, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|Q Chain Q, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|Q Chain Q, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|Q Chain Q, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|Q Chain Q, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|Q Chain Q, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|Q Chain Q, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|Q Chain Q, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|Q Chain Q, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|Q Chain Q, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|Q Chain Q, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|Q Chain Q, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|Q Chain Q, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|Q Chain Q, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|Q Chain Q, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|Q Chain Q, Ef-Tu Complex 3
pdb|2Y19|Q Chain Q, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|Q Chain Q, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|Q Chain Q, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|Q Chain Q, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3TVE|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3UYE|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|P Chain P, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|Q Chain Q, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|Q Chain Q, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|Q Chain Q, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|Q Chain Q, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|Q Chain Q, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|Q Chain Q, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|Q Chain Q, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|Q Chain Q, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|Q Chain Q, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|P Chain P, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|P Chain P, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|P Chain P, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|P Chain P, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 141
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 17 LLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQ 76
L+ + ++TA +I V M+ ++ RI P +PY +K + V +GKG
Sbjct: 34 LVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGKG------- 86
Query: 77 ALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYI-RSDLY 133
KG + + R M + + + RI +L ++T I R D Y
Sbjct: 87 -------KGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAY 137
>pdb|1VSA|K Chain K, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|K Chain K, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|Q Chain Q, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|Q Chain Q, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|Q Chain Q, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|Q Chain Q, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|3MRZ|M Chain M, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|M Chain M, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s)
Length = 141
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 17 LLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQ 76
L+ + ++TA +I V M+ ++ RI P +PY +K + V +GKG
Sbjct: 34 LVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGKG------- 86
Query: 77 ALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYI-RSDLY 133
KG + + R M + + + RI +L ++T I R D Y
Sbjct: 87 -------KGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAY 137
>pdb|3PYO|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|M Chain M, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|M Chain M, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 136
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 17 LLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQ 76
L+ + ++TA +I V M+ ++ RI P +PY +K + V +GKG
Sbjct: 29 LVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGKG------- 81
Query: 77 ALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYI-RSDLY 133
KG + + R M + + + RI +L ++T I R D Y
Sbjct: 82 -------KGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAY 132
>pdb|3FIN|Q Chain Q, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 136
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 17 LLKVRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRKDMFVEIGKGVSPNFVQ 76
L+ + ++TA +I V M+ ++ RI P +PY +K + V +GKG
Sbjct: 29 LVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGKG------- 81
Query: 77 ALELMLAKGEYLAFAPDTEETRTMINLMSIKFPKLKLVSRIYKDELELETYI-RSDLY 133
KG + + R M + + + RI +L ++T I R D Y
Sbjct: 82 -------KGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDAY 132
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And Amp-Pnp
Length = 359
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1532 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1586
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 194 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 253
Query: 1587 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 254 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 313
Query: 1641 WEVISRLSTRQGKTAVILTTH 1661
++ R + + VIL +H
Sbjct: 314 ITIMERYLKKIPQ--VILVSH 332
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1532 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1586
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 14 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 73
Query: 1587 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 74 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 133
Query: 1641 WEVISRLSTRQGKTAVILTTH 1661
++ R + + VIL +H
Sbjct: 134 ITIMERYLKKIPQ--VILVSH 152
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 1532 KDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME----KL 1586
KD+ LI ++ AL + + EL + I E + +VV+ K+
Sbjct: 9 KDLEKAKDFTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKV 68
Query: 1587 VEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFM 1640
F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D +R +
Sbjct: 69 RLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL 128
Query: 1641 WEVISRLSTRQGKTAVILTTH 1661
++ R + + VIL +H
Sbjct: 129 ITIMERYLKKIPQ--VILVSH 147
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In Complex
With Amp- Pnp
Length = 339
Score = 30.8 bits (68), Expect = 7.9, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 1526 TAFIFGKDIRSDPKAARRLIGYCPQFDALLEYLTVQEHLELYARI-KGVAEYRMDDVVME 1584
TA+ +++ LI ++ AL + + EL + I E + +VV+
Sbjct: 168 TAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVR 227
Query: 1585 ----KLVEFDLLKHAKKPSFTLSGGNK------RKLSVAIAMIGDPPIVILDEPSTGMDP 1634
K+ F + + ++P LSGG + +L++++ + G+ ++ILDEP+ +D
Sbjct: 228 AEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 287
Query: 1635 IAKRFMWEVISRLSTRQGKTAVILTTH 1661
+R + ++ R + + VIL +H
Sbjct: 288 ERRRKLITIMERYLKKIPQ--VILVSH 312
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 594 LLGHNGAGKSTTISMLVGLIPP--------TTGDALVFGKNITADMDEIRKGLGVCPQYD 645
++G +GK+TT++ + IPP T + ++ +N A++ G G YD
Sbjct: 265 VVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGXGEGEIDXYD 324
Query: 646 ILFPELTVREHLEMFAVLKGVKEELL 671
+L L R + ++G + + L
Sbjct: 325 LLRAALRQRPDYIIVGEVRGREAQTL 350
>pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc
Binding And Rna Polymerase Domains)
Length = 407
Score = 30.4 bits (67), Expect = 8.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 1537 DPKAARRL-IGYCPQFDALLEYLTVQEHLELYARIKGV 1573
DPK AR+ +GY P +AL++ L + LE Y K +
Sbjct: 136 DPKVARKFDLGYAPSSEALVKVLKENDLLEAYLETKNL 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,710,598
Number of Sequences: 62578
Number of extensions: 1900402
Number of successful extensions: 4572
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4106
Number of HSP's gapped (non-prelim): 273
length of query: 1833
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1720
effective length of database: 7,902,023
effective search space: 13591479560
effective search space used: 13591479560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)