Query 000224
Match_columns 1833
No_of_seqs 590 out of 6387
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:10:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000224.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_4-8//hhsearch_pdb/000224hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 685.4 49.1 222 558-788 414-647 (1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 673.2 65.3 224 558-786 386-617 (1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 579.8 35.9 206 1463-1692 356-563 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 569.1 32.9 206 1463-1692 286-493 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 564.7 36.4 194 558-777 434-630 (986)
6 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 541.5 35.9 208 1463-1692 268-477 (538)
7 3j16_B RLI1P; ribosome recycli 1.0 1 1 540.4 24.8 193 1484-1693 361-560 (608)
8 3ux8_A Excinuclease ABC, A sub 1.0 1 1 528.2 35.1 212 564-777 20-293 (670)
9 3tui_C Methionine import ATP-b 1.0 1 1 412.7 31.6 226 558-783 23-254 (366)
10 3tui_C Methionine import ATP-b 1.0 1 1 412.6 30.1 230 1461-1693 21-254 (366)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=685.40 Aligned_cols=222 Identities=26% Similarity=0.393 Sum_probs=193.6
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999669994277884010132358884780999946999975799998809999995159996712782-1788604
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~ 636 (1833)
..|+++|++..|++++ +..+++|+||++++||.++++|++||||||++++|.|+++|++|+|.++|.|++. +.++.|+
T Consensus 414 g~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCEEEEEEEEECCCCC-CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHH
T ss_conf 7679998554079999-874333318862288278998058985778888754565164486157996501125999850
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 469982689889999999999999996099978899999999998399-----------830063237889568999999
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGL-----------ADKVNIVVRALSGGMKRKLSL 705 (1833)
Q Consensus 637 ~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L-----------~~~~~~~~~~LSGG~KrkLsi 705 (1833)
++|||||++.||++ |++||+.++.. ..+. +++.+.++..++ .........+||||||||+++
T Consensus 493 ~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiai 565 (1321)
T 4f4c_A 493 NVAVVSQEPALFNC-TIEENISLGKE--GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI 565 (1321)
T ss_dssp HEEEECSSCCCCSE-EHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHH
T ss_pred CCCCCCCCCEEECC-CHHHHHHHHCC--CCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHH
T ss_conf 46665875332078-61678864155--2209----99999998756546887088888607558988777778799999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHC
Q ss_conf 99971899499982888999999999999999998389699997079779985338999960987996269778986509
Q 000224 706 GIALIGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYG 785 (1833)
Q Consensus 706 A~Alig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g 785 (1833)
|||++.+|+|++||||||+||+.+++.+.+.|.++.+|||+|++||++.-+. .||+|++|++|++++.|+..+|.++-|
T Consensus 566 ARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~~g 644 (1321)
T 4f4c_A 566 ARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQQG 644 (1321)
T ss_dssp HHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTTTC
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HCCEEEEEECCEEECCCCHHHHHHHHH
T ss_conf 9987259998998455446887899999999999847988999736387898-689899963996513689999998532
Q ss_pred CCE
Q ss_conf 937
Q 000224 786 VGY 788 (1833)
Q Consensus 786 ~gy 788 (1833)
..+
T Consensus 645 ~y~ 647 (1321)
T 4f4c_A 645 LYY 647 (1321)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=673.24 Aligned_cols=224 Identities=25% Similarity=0.425 Sum_probs=191.6
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC-CHHHHHC
Q ss_conf 309999669994277884010132358884780999946999975799998809999995159996712782-1788604
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA-DMDEIRK 636 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~-~~~~~r~ 636 (1833)
..|+++|+++.|+.++ +..+++|+||++++||+++++|+|||||||++++|.|+++|++|+|.++|.|+.. +..+.|+
T Consensus 386 g~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CEEEEEEEEEECCCCC-CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHH
T ss_conf 7189999899769999-871012545897599889998999997999999980788999738999999877579999986
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 469982689889999999999999996099978899999-----9999983--998300632378895689999999997
Q 000224 637 GLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVV-----AEMVDEV--GLADKVNIVVRALSGGMKRKLSLGIAL 709 (1833)
Q Consensus 637 ~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v-----~~~l~~l--~L~~~~~~~~~~LSGG~KrkLsiA~Al 709 (1833)
.+|+|||++.+|+. |++||+.+... ..+.+++.+.. .+.++.+ |++...+....+||||||||+++|+|+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54898688753776-69999745798--9999999999998296999974656334501478786599999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHHHCC
Q ss_conf 18994999828889999999999999999983896999970797799853389999609879962697789865099
Q 000224 710 IGDSKVVILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQYGV 786 (1833)
Q Consensus 710 ig~p~iliLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~~g~ 786 (1833)
+.+|+|++||||||+||+.+++.+.+.+++.++|+|+|++||+++++.. ||||.+|++|++++.|++.+|.++.|.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 617 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGI 617 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHTTSH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHC-CCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 5299989997987777999999999999997399989999407789974-998999989999997889999867877
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=579.80 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=179.6
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 51999868999189865565421333359975881999995999968999999919988995079996850899968760
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+++++|++|.|++ ..++.++|++++||++||+|||||||||++++|+|+++|++|+|.+ .
T Consensus 356 ~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~ 416 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------D 416 (607)
T ss_dssp EEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------C
T ss_pred EEEEEECEEEEECC-------EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE------------E
T ss_conf 28999130987443-------4899351532799899999999989999999996698888628999------------0
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44299805898798999999999999970999055999999999874996201889899894699999999999069998
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1622 (1833)
.++||+||+..+...+|+.|++...... +. ...+.+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHCC-CC---CHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 2799980576677898499999753125-87---7899999999876993375499223799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938789989999999999999987416996999963778889977679999989--99999659667975
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1623 llLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~i~~~gs~~~l~~ 1692 (1833)
|+|||||+|||+.+++.++++|+++..+.| .|||++||+++++..+|||+++|++ |++.+.|+++++..
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEECCCCCEEEECCCHHHHHH
T ss_conf 999687447899999999999999997479-89999909899999869999999598306974289899975
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=569.13 Aligned_cols=206 Identities=23% Similarity=0.323 Sum_probs=178.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 51999868999189865565421333359975881999995999968999999919988995079996850899968760
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.+++++|+++.|++ ..++.++|++++||++||+|||||||||++++|+|+++|++|+|.+ .
T Consensus 286 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~ 346 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------D 346 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------C
T ss_pred EEEEEEEEEEEECC-------EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE------------C
T ss_conf 18999307999899-------8999074412899899998899999999999996799899718998------------7
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44299805898798999999999999970999055999999999874996201889899894699999999999069998
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1622 (1833)
.++||+||+....+.+|+.|++...... +.. ..+.+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHCC-CCC---HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 4699982677678888599999864036-887---899999999974991565399444899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938789989999999999999987416996999963778889977679999989--99999659667975
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1623 llLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~i~~~gs~~~l~~ 1692 (1833)
|+|||||+|||+.+++.++++|+++..+.| .|||++||+++++..+|||+++|.+ |++.+.|+++++..
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEEEECCCHHHHHH
T ss_conf 999398010899999999999999998679-89999939899999968999999088315740489899974
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=564.71 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=165.9
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCC
Q ss_conf 30999966999427788401013235888478099994699997579999880999999515999671278217886044
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITADMDEIRKG 637 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~~~~~~r~~ 637 (1833)
..+...|++|.|+ .+.+++|+||++.+|++++|+|+||||||||+++|+| |++ .|.+... +..
T Consensus 434 ~~L~~~~ls~~yg----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECR 496 (986)
T ss_dssp CEEEEEEEEEEET----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSC
T ss_pred CEEEEEEEEEEEC----CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC------CCC--CCCCCCC-----CEE
T ss_conf 5248953899989----9876741269981897899999999879999999948------986--7976635-----416
Q ss_pred EEEECCCC-CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 69982689-8899999999999999960999788999999999983998-300632378895689999999997189949
Q 000224 638 LGVCPQYD-ILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLA-DKVNIVVRALSGGMKRKLSLGIALIGDSKV 715 (1833)
Q Consensus 638 iG~cpQ~~-~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSGG~KrkLsiA~Alig~p~i 715 (1833)
++|++|+. .+++.+||.|++.+ ...+. ++++.++++.+|+. +..++++.+||||||||++||+||+.+|++
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l 569 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE
T ss_pred EEEECCCCCCCCCCCCHHHHHHH--HHCCH-----HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 99973564324557809999998--61279-----999999999869984464398020799999999999999649999
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEE-EECCH
Q ss_conf 998288899999999999999999838969999707977998533899996098799-62697
Q 000224 716 VILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEAEELGDRIAIMANGSLK-CCGSS 777 (1833)
Q Consensus 716 liLDEPTsGLDp~srr~iw~~l~~~~~grtiiltTH~mdEad~l~DrI~Il~~G~l~-~~Gs~ 777 (1833)
++|||||+|||+.+++.++++|++ .|+|||++||++++++.+||||.+|.+|+++ ..|+.
T Consensus 570 LLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 570 LLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNF 630 (986)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECCEEECCCCCH
T ss_conf 999797667999999999999986--7998999979889999868999999799442677999
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=541.50 Aligned_cols=208 Identities=23% Similarity=0.273 Sum_probs=176.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHC
Q ss_conf 51999868999189865565421333359975881999995999968999999919988995079996850899968760
Q 000224 1463 AIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAAR 1542 (1833)
Q Consensus 1463 ~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 1542 (1833)
.++++++++|.|++ ..++..+|++++||++||+|||||||||++++|+|+++|++|+|.+.+
T Consensus 268 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK----------- 329 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------
T ss_pred CEEEECCEEEEECC-------EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
T ss_conf 06998233999798-------899826646889989999999999899999999578889981899998-----------
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 44299805898798999999999999970999055999999999874996201889899894699999999999069998
Q 000224 1543 RLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPI 1622 (1833)
Q Consensus 1543 ~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~i 1622 (1833)
+.++|+||+......+|++|++...... .... ....+.++++.+++.+..++++.+||||||||++||+||+.+|++
T Consensus 330 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l 406 (538)
T 3ozx_A 330 QILSYKPQRIFPNYDGTVQQYLENASKD-ALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL 406 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHCSS-TTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEEEECHHCCCCCCCCHHHHHHHHHHH-CCCH--HHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 4567614000345477799999875531-1211--699999999875997786289322799999999999999708998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHH
Q ss_conf 99938789989999999999999987416996999963778889977679999989--99999659667975
Q 000224 1623 VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKT 1692 (1833)
Q Consensus 1623 llLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~i~~~gs~~~l~~ 1692 (1833)
|+|||||+|||+.+++.++++|++++.+.| .|||++||+++++..+||||++|.+ |.....+++..+..
T Consensus 407 LlLDEPT~gLD~~~~~~i~~~l~~l~~~~g-~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEECCCCCHHHHHH
T ss_conf 999698657999999999999999997389-89999958899999968999999698510116798477887
No 7
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=540.38 Aligned_cols=193 Identities=22% Similarity=0.297 Sum_probs=165.1
Q ss_pred CEEEEEEEEEECC-----CEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHCCCEEEEECCCCCCCCC
Q ss_conf 2133335997588-----19999959999689999999199889950799968508999687604429980589879899
Q 000224 1484 VAVHSLTFSVQAG-----ECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSDPKAARRLIGYCPQFDALLEYL 1558 (1833)
Q Consensus 1484 ~av~~is~~v~~G-----ei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~ig~~pQ~~~l~~~l 1558 (1833)
.++++++|++++| |++||+|||||||||++++|+|+++|++|+. +. +..++|+||+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC------CC------CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787878858------66------77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 99999999999709990559999999998749962018898998946999999999990699989993878998999999
Q 000224 1559 TVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKR 1638 (1833)
Q Consensus 1559 tv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al~~~p~illLDEPt~GlDp~~r~ 1638 (1833)
|++|++. ...++... ..+.+.++++.+++.+.+++++.+||||||||++||+||+.+|++|+|||||+|||+.++.
T Consensus 429 tv~e~~~--~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 429 TVRQLFF--KKIRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp BHHHHHH--HHCSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred CHHHHHH--HHHHCCCC--CHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 6999998--77530324--6899999998749834651993238999999999999997389999998988889999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHHHHHH
Q ss_conf 9999999987416996999963778889977679999989--999996596679751
Q 000224 1639 FMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG--GQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1639 ~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~--G~i~~~gs~~~l~~~ 1693 (1833)
.++++|+++..+.| .|||++||+++++..+|||+++|++ |++.+.|+|+++...
T Consensus 505 ~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 505 ICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCCCEEEECCCHHHHHHH
T ss_conf 99999999997579-989999688999998689999995898737742986998630
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=528.16 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=157.8
Q ss_pred EEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHCCCCCCCC-----
Q ss_conf 6699942778840101323588847809999469999757999---------------------98809999995-----
Q 000224 564 KLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTI---------------------SMLVGLIPPTT----- 617 (1833)
Q Consensus 564 ~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll---------------------~iL~Gl~~pts----- 617 (1833)
+++|.|... ....+|+|+||++++||+++|+||||||||||+ +++.|+..|+.
T Consensus 20 ~~~~~~~~~-~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~ 98 (670)
T 3ux8_A 20 HMDKIIVKG-ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEG 98 (670)
T ss_dssp --CEEEEEE-ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEES
T ss_pred CCCEEEECC-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEC
T ss_conf 763589768-7764023438998799899998999999888715101232111000110024455530345677563213
Q ss_pred --CEEEECCCCCCCCH--------------HHHHCCEEEECCCC--CCCCCCCHHHHHHHHHHHCCCC--HHHHHH----
Q ss_conf --15999671278217--------------88604469982689--8899999999999999960999--788999----
Q 000224 618 --GDALVFGKNITADM--------------DEIRKGLGVCPQYD--ILFPELTVREHLEMFAVLKGVK--EELLES---- 673 (1833)
Q Consensus 618 --G~v~i~G~di~~~~--------------~~~r~~iG~cpQ~~--~L~~~LTv~EhL~~~~~lkg~~--~~~~~~---- 673 (1833)
|.+.++|.+..... ...+..+|+.+|.. ..++.+||.|++.++..+.... ....+.
T Consensus 99 ~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 178 (670)
T 3ux8_A 99 LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILRE 178 (670)
T ss_dssp CCCEEEESSCC-----CCBHHHHTTCC-------------------------CC--------------------------
T ss_pred CCCCEEECCCHHHCCCHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 56415744720102550000465112566777775311112344433345785999999752036431456778888999
Q ss_pred --HHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEE
Q ss_conf --99999998399830-063237889568999999999718994--999828889999999999999999983-896999
Q 000224 674 --VVAEMVDEVGLADK-VNIVVRALSGGMKRKLSLGIALIGDSK--VVILDEPTSGMDPYSMRLTWQLIKKIK-KGRIIL 747 (1833)
Q Consensus 674 --~v~~~l~~l~L~~~-~~~~~~~LSGG~KrkLsiA~Alig~p~--iliLDEPTsGLDp~srr~iw~~l~~~~-~grtii 747 (1833)
+..++++.+||.+. .++++.+||||||||++||+||+.+|+ +++|||||+||||.+++.++++|++++ .|.|||
T Consensus 179 ~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi 258 (670)
T 3ux8_A 179 IRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 258 (670)
T ss_dssp CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99999899975984344149700189999999999999962899878999798568999999999999999997499899
Q ss_pred EECCCHHHHHHHCCEEEEE------ECCEEEEECCH
Q ss_conf 9707977998533899996------09879962697
Q 000224 748 LTTHSMDEAEELGDRIAIM------ANGSLKCCGSS 777 (1833)
Q Consensus 748 ltTH~mdEad~l~DrI~Il------~~G~l~~~Gs~ 777 (1833)
++||++++++. ||||++| .+|++++.|++
T Consensus 259 ~vtHd~~~~~~-~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 259 VVEHDEDTMLA-ADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp EECCCHHHHHH-CSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEECCHHHHHH-CCEEEEECCCCCCCCCEEEEECCH
T ss_conf 99578799962-998999446665669889974089
No 9
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=412.66 Aligned_cols=226 Identities=31% Similarity=0.435 Sum_probs=203.4
Q ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCC----CHHH
Q ss_conf 309999669994277884010132358884780999946999975799998809999995159996712782----1788
Q 000224 558 RCIQIRKLHKVYATKRGNCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLIPPTTGDALVFGKNITA----DMDE 633 (1833)
Q Consensus 558 ~~i~i~~l~K~y~~~~~~~~av~~lsl~i~~Gei~~LLG~NGAGKSTll~iL~Gl~~ptsG~v~i~G~di~~----~~~~ 633 (1833)
..|+++||+|.|+.+.+...||+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. +...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred CEEEEEEEEEEECCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHH
T ss_conf 65999848999389887737887469998489899999589955999999996699999629999999987589879998
Q ss_pred HHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 60446998268988999999999999999609997889999999999839983006323788956899999999971899
Q 000224 634 IRKGLGVCPQYDILFPELTVREHLEMFAVLKGVKEELLESVVAEMVDEVGLADKVNIVVRALSGGMKRKLSLGIALIGDS 713 (1833)
Q Consensus 634 ~r~~iG~cpQ~~~L~~~LTv~EhL~~~~~lkg~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSGG~KrkLsiA~Alig~p 713 (1833)
.|+.+||+||++.+++.+||+||+.+.....+.+..+.+++++++++.+||.++.++.+.+||||||||++||+||+.+|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 73868999278756888899999999998659987899999999999769934761994558999999999999996699
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 4999828889999999999999999983--896999970797799853389999609879962697789865
Q 000224 714 KVVILDEPTSGMDPYSMRLTWQLIKKIK--KGRIILLTTHSMDEAEELGDRIAIMANGSLKCCGSSLFLKHQ 783 (1833)
Q Consensus 714 ~iliLDEPTsGLDp~srr~iw~~l~~~~--~grtiiltTH~mdEad~l~DrI~Il~~G~l~~~Gs~~~Lk~~ 783 (1833)
++++|||||+||||.+++.++++|++++ .|+|||++||+|+++..+||||++|.+|++++.|++.++...
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 999997987568999999999999999973799999995689999996999999989989997589999718
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=412.58 Aligned_cols=230 Identities=26% Similarity=0.453 Sum_probs=211.0
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCC-HH
Q ss_conf 86519998689991898655654213333599758819999959999689999999199889950799968508999-68
Q 000224 1461 DNAIIYLRNLRKVYPGGKRSDAKVAVHSLTFSVQAGECFGFLGTNGAGKTTTLSMISGEEYPTDGTAFIFGKDIRSD-PK 1539 (1833)
Q Consensus 1461 ~~~~l~v~~l~k~y~~~~~~~~~~av~~is~~v~~Gei~gllG~NGAGKTTll~~l~G~~~p~~G~i~i~G~~i~~~-~~ 1539 (1833)
.+++|+++||+|.|+++. +...||+|+||+|++||++||+|||||||||++++|+|+++|++|+|.++|.++... ..
T Consensus 21 ~~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCEEEEEEEEEEECCCC--CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH
T ss_conf 986599984899938988--773788746999848989999958995599999999669999962999999998758987
Q ss_pred ---HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---76044299805898798999999999999970999055999999999874996201889899894699999999999
Q 000224 1540 ---AARRLIGYCPQFDALLEYLTVQEHLELYARIKGVAEYRMDDVVMEKLVEFDLLKHAKKPSFTLSGGNKRKLSVAIAM 1616 (1833)
Q Consensus 1540 ---~~~~~ig~~pQ~~~l~~~ltv~e~l~~~~~l~g~~~~~~~~~v~~~l~~~~L~~~~~~~~~~lSgG~krrl~iA~al 1616 (1833)
..|++|||+||+..+++.+||+||+.+....++.++.+..+++.++++.++|.+.+++++.+||||||||++||+||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99987386899927875688889999999999865998789999999999976993476199455899999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 06999899938789989999999999999987416996999963778889977679999989999996596679751
Q 000224 1617 IGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTR 1693 (1833)
Q Consensus 1617 ~~~p~illLDEPt~GlDp~~r~~i~~~i~~l~~~~~~~tiilttH~m~e~e~l~dri~il~~G~i~~~gs~~~l~~~ 1693 (1833)
+.+|++|||||||+||||.+++.++++|++++++.| .|||++||+|+++..+||||++|++|++++.|+++++...
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 669999999798756899999999999999997379-9999995689999996999999989989997589999718
Done!