Query 000225
Match_columns 1833
No_of_seqs 524 out of 3580
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:04:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000225.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_4-8//hhsearch_pdb/000225hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 573.8 22.3 260 1525-1800 65-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 563.6 15.8 257 1527-1801 59-392 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 485.7 31.7 310 341-666 73-407 (515)
4 3aq1_B Thermosome subunit; gro 1.0 1 1 474.0 23.7 309 341-665 37-369 (500)
5 3iyg_A T-complex protein 1 sub 1.0 1 1 472.4 30.8 309 341-666 74-414 (529)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 472.4 28.5 308 341-665 85-416 (543)
7 1a6d_A Thermosome (alpha subun 1.0 1 1 470.5 27.9 308 340-665 85-415 (545)
8 1q3q_A Thermosome alpha subuni 1.0 1 1 470.4 28.0 308 341-665 87-418 (548)
9 3ko1_A Chaperonin; 9-fold symm 1.0 1 1 470.4 28.3 308 341-665 94-425 (553)
10 3ruv_A Chaperonin, CPN; double 1.0 1 1 468.9 28.1 305 341-665 83-411 (543)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=573.79 Aligned_cols=260 Identities=27% Similarity=0.462 Sum_probs=233.0
Q ss_pred EEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEECCCHHHHH
Q ss_conf 9995379998442499999389999999988099968899963125557-668997521499741783898506999999
Q 000225 1525 RISFTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKW-GAQGGKSNVFFAKTLDDRFIIKQVPKTELE 1603 (1833)
Q Consensus 1525 ~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~-~~~gGKSgs~F~~T~D~rfiiKti~~~E~~ 1603 (1833)
.+.|+.++.+ .+|+|++|||.+|++||++||+++.+|+.||++|.+| .+++|||||+||+|.|+|||||||++.|++
T Consensus 65 ~~~f~~~~~p--~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~ 142 (394)
T 2ybx_A 65 NHLFNKENMP--SHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVA 142 (394)
T ss_dssp EESSSTTTSC--SEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHH
T ss_pred CCCCCCCCCC--CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHH
T ss_conf 6567865688--87499997889999999982979999999854787642478998668799817972899961999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCC-CCCEEEECCCCCCCCCCCCC
Q ss_conf 99998599999997303899993003566689986422479914799987752135787-52034517897435555688
Q 000225 1604 SFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADT 1682 (1833)
Q Consensus 1604 ~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~ 1682 (1833)
+|+++||.||+||.++ +++|||+||||+|+|++. |+ +.|||||+|||+++ .|+++||||||+++|++.+.
T Consensus 143 ~l~~~lp~Y~~~~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~ 213 (394)
T 2ybx_A 143 EMHNILKKYHQYIVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDK 213 (394)
T ss_dssp HHHHHHHHHHHHHHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 9999999999999840---898676653178999989----90--79999993677887642010020564457766753
Q ss_pred C--CCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-------------------
Q ss_conf 8--9973113133542089997130968999999999954987720586565105764145-------------------
Q 000225 1683 S--GSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEE------------------- 1741 (1833)
Q Consensus 1683 ~--~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~vmDYSLLvgi~~~------------------- 1741 (1833)
+ +...||||+||++.. .+|+|+++.|+.|.+||++||.||+++|||||||||||+..
T Consensus 214 ~~~~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~ 291 (394)
T 2ybx_A 214 EKAKELPTLKDNDFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEG 291 (394)
T ss_dssp HHTSSSCEECHHHHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC---------
T ss_pred CCCCCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCC
T ss_conf 445676541111367469--819978999999999999999999877876640487773155432000024455554334
Q ss_pred -----------------------------------------------CEEEEEEHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf -----------------------------------------------406743011566404225578787544022489
Q 000225 1742 -----------------------------------------------KHELVLGIIDFMRQYTWDKHLETWVKTSGILGG 1774 (1833)
Q Consensus 1742 -----------------------------------------------~~~l~~GIID~l~~yt~~KklE~~~K~~~~l~g 1774 (1833)
+..||+|||||||+|||+||+|||+|+. ++|
T Consensus 292 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~--~~~ 369 (394)
T 2ybx_A 292 ESDGTHPVGTPPDSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTV--KHG 369 (394)
T ss_dssp -----------------------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC----------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHH--CCC
T ss_conf 456554457875553444432222365545644432343455577774379999998631078408999999986--158
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999730394789999999998741
Q 000225 1775 PKNTSPTVISPQQYKKRFRKAMTTYF 1800 (1833)
Q Consensus 1775 ~~~~~~Tvv~P~~Y~~RF~~~m~~~f 1800 (1833)
. +..||+|+|++|++||++||.++|
T Consensus 370 ~-~~~iS~V~P~~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 370 A-GAEISTVNPEQYSKRFLDFIGHIL 394 (394)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHC
T ss_pred C-CCCCCEECHHHHHHHHHHHHHHHC
T ss_conf 9-999856998999999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=563.63 Aligned_cols=257 Identities=28% Similarity=0.472 Sum_probs=229.6
Q ss_pred EECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHH
Q ss_conf 95379998442499999389999999988099968899963125557668997521499741783898506999999999
Q 000225 1527 SFTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFI 1606 (1833)
Q Consensus 1527 ~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKti~~~E~~~f~ 1606 (1833)
.|+.++.+ .+|+|++|||.+|++||++||+++.+|+.||++|.+|. ++|||| +||+|.|+|||||||++.|+++|+
T Consensus 59 ~f~~e~~p--~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~ 134 (392)
T 2gk9_A 59 LFHRENLP--SHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMH 134 (392)
T ss_dssp SSCCSSSC--SSBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHH
T ss_pred CCCCCCCC--CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHH
T ss_conf 57866688--86499997979999999980989899998743787455-798762-379869986899960999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCC-CCCEEEECCCCCCCCCCCCCCC-
Q ss_conf 98599999997303899993003566689986422479914799987752135787-5203451789743555568889-
Q 000225 1607 KFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTSG- 1684 (1833)
Q Consensus 1607 ~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~- 1684 (1833)
++||.||+||.++ +++|||+||||+|+|+++ |++ .|||||||||+++ .|+++||||||+++|++.+.+.
T Consensus 135 ~~lp~Y~~~~~~~---~~~TLL~k~~Gly~v~~~----~~~--~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~ 205 (392)
T 2gk9_A 135 SNLSNYHQYIVKC---HGNTLLPQFLGMYRVSVD----NED--SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKV 205 (392)
T ss_dssp HHHHHHHHHHHHT---TSCSSSCCEEEEEECCBS----SCC--CEEEEEECSSCSSSCCSCCCEECC-------------
T ss_pred HHHHHHHHHHHHH---CCCCCHHHHCEEEEEEEC----CEE--EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 9999999999840---798655653068999989----907--9999993677887641034450565457766752235
Q ss_pred -CCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC---------------------
Q ss_conf -9731131335420899971309689999999999549877205865651057641454---------------------
Q 000225 1685 -SNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEK--------------------- 1742 (1833)
Q Consensus 1685 -~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~vmDYSLLvgi~~~~--------------------- 1742 (1833)
...||||+||++.. .+|+|+++.|+.|.+||++||.||+++|||||||||||+...
T Consensus 206 ~~~~~LkD~df~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (392)
T 2gk9_A 206 KELPTLRDMDFLNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGD 283 (392)
T ss_dssp ----CCBTTC--CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC----------------------
T ss_pred CCCCEECCCCHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 666611131156259--869878999999999999999999876876630587663155432112222344555545553
Q ss_pred -----------------------------------------------------EEEEEEHHHHHHCCCHHHHHHHHHHHH
Q ss_conf -----------------------------------------------------067430115664042255787875440
Q 000225 1743 -----------------------------------------------------HELVLGIIDFMRQYTWDKHLETWVKTS 1769 (1833)
Q Consensus 1743 -----------------------------------------------------~~l~~GIID~l~~yt~~KklE~~~K~~ 1769 (1833)
..||+|||||||+|||+||+|||+|+.
T Consensus 284 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~ 363 (392)
T 2gk9_A 284 CSLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTV 363 (392)
T ss_dssp -----------------------------------------------------CBCCCEECCCC----------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHH
T ss_conf 32345643224567885453333432222366656544432343455567775279999977400087008999999986
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 22489999997303947899999999987414
Q 000225 1770 GILGGPKNTSPTVISPQQYKKRFRKAMTTYFL 1801 (1833)
Q Consensus 1770 ~~l~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1801 (1833)
++|. +..||+|+|++|++||++||.++|.
T Consensus 364 --~~~~-~~~iS~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 364 --KHGA-GAEISTVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp --------------CHHHHHHHHHHHTC----
T ss_pred --CCCC-CCCCCEECHHHHHHHHHHHHHHHHC
T ss_conf --1578-9997468989999999999999609
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=485.73 Aligned_cols=310 Identities=23% Similarity=0.394 Sum_probs=288.3
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC------------
Q ss_conf 45559778863214623100489998676446510013899999999999999987187878889-91------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~-~~------------ 407 (1833)
..||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++... +.
T Consensus 73 ~~qd~e~GDGTT---tvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~ 149 (515)
T 3iyg_G 73 RTQDEEVGDGTT---SVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSIT 149 (515)
T ss_pred HHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 986626277722---49999999999999999879988999999999999999999985045688889999999998714
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.+++++++|+..|.++......+|+++||+|+|++||++.||++++|++|+|++.|++|+++++||||||+
T Consensus 150 sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 229 (515)
T 3iyg_G 150 TKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 229 (515)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEE
T ss_conf 87525579999999999998423356888545642305899836998010168841798278789888614441079998
Q ss_pred CCCCCHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 26322000036-------93349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+|+|||++.+. ...++.+++++|++|++++|++|++.||+|||++++|+++|+++|.++||++++++++.+|+
T Consensus 230 ~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~le 309 (515)
T 3iyg_G 230 DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNN 309 (515)
T ss_pred CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHH
T ss_conf 15554442346742896789999999999999999999999947998999788667899999987895666667889999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCE-EEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 999996997825455579888740-1499999740344666888764431599996679997049994699887999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 635 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evK 635 (1833)
|||++|||+++++++++++..||+ |+.|++.++++ ++++||+||+++.+|||+|||+|+.+|+|+|
T Consensus 310 ria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~E~e 376 (515)
T 3iyg_G 310 RIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTILLRGASKEILSEVE 376 (515)
T ss_pred HHHHHHCCEEECCCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 999995992642102367666287562899999878-------------1699995788887689998489889999999
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf 9999999999998852908707971477899
Q 000225 636 HVVQYGVFAAYHLALETSFLADEGASLPQLP 666 (1833)
Q Consensus 636 r~l~dal~a~~~l~lE~~vl~GgGa~~~~~~ 666 (1833)
|+++||+++++++++++++||||||+|+++.
T Consensus 377 r~i~Dal~~~r~~~~~~~ivpGGGa~e~~~~ 407 (515)
T 3iyg_G 377 RNLQDAMQVCRNVLLDPQLVPGGGASEMAVA 407 (515)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCHHHHHHH
T ss_conf 9999999999999628968937889999999
No 4
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=473.96 Aligned_cols=309 Identities=20% Similarity=0.302 Sum_probs=286.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC------------
Q ss_conf 45559778863214623100489998676446510013899999999999999987187878889-91------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~-~~------------ 407 (1833)
.-||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++... +.
T Consensus 37 ~~qd~e~GDGTT---tvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~ 113 (500)
T 3aq1_B 37 KTQDAEVGDGTT---TAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAIT 113 (500)
T ss_dssp ------CCHHHH---HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 963415179857---89999999999999999879998999999999999999999982688888767899999999862
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++......+|+.++|+|+|++||+..||++++|++|+|++.|+.|+++++||||||+
T Consensus 114 sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~ 193 (500)
T 3aq1_B 114 GKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLL 193 (500)
T ss_dssp SSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 31135557899999999999961334687444511227999835898001178822699405788998544359879999
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ ++..+++.++++|++|++.++++|++.|+||||++++|++.|+++|.++||++++++++.+|+
T Consensus 194 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le 273 (500)
T 3aq1_B 194 SCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLK 273 (500)
T ss_dssp SSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred ECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHH
T ss_conf 37766665446324764899999999999999999999999974939999877767799999987898999727999999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|+++++++ +++++|+||+++..|||+|||+|+.+|+|+||
T Consensus 274 ~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er 340 (500)
T 3aq1_B 274 RLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDH 340 (500)
T ss_dssp HHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998499574560118986788760899998457-------------68999977888756999935896779999999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.|+++||||||+|..+
T Consensus 341 ~l~Dal~~~r~~~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 341 ALNDALHVVGVVIEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp HHHHHHHHHHHHHHHSEEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99989999999997888788872999999
No 5
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=472.40 Aligned_cols=309 Identities=17% Similarity=0.209 Sum_probs=283.6
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CC-----------
Q ss_conf 4555977886321462310048999867644651001389999999999999998718-7878889-91-----------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDEN-DR----------- 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~-is~~~~~-~~----------- 407 (1833)
.-||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++ ++++... +.
T Consensus 74 ~~qd~e~GDGTT---tvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl 150 (529)
T 3iyg_A 74 DLQDKEVGDGTT---SVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSM 150 (529)
T ss_pred HHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 976645377720---29999999999999999879999999999999999999999874260788899899999999985
Q ss_pred -----HHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEE
Q ss_conf -----014899988999998531668788-99999999499999239984302699813574202457880253297299
Q 000225 408 -----ESWLEIITSLSWEAATLLKPDMSK-CGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 481 (1833)
Q Consensus 408 -----~~w~~~L~~L~~~Av~~V~~d~~~-~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkIL 481 (1833)
..|.+.|++|+++|+..|++.... ...+|+ ++|+|++++||++.||++++|++|+|++.|+.|++.++||||+
T Consensus 151 ~sK~~~~~~~~i~~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIl 229 (529)
T 3iyg_A 151 SSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIA 229 (529)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 667553207899999999999975124478766654-4179999559885543899616874586435687516886699
Q ss_pred EECCCCCHHCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHH
Q ss_conf 9126322000036-------933499999999999999999987059969999279589999999994990894059477
Q 000225 482 ILGGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPL 554 (1833)
Q Consensus 482 Ll~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~ 554 (1833)
+++|+|+|++.+. +..+++.+.++|+++++.++++|++.|+||||++++|+++|+++|.++||++++++++.+
T Consensus 230 ll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~ 309 (529)
T 3iyg_A 230 CLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRD 309 (529)
T ss_pred EECCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEECCCCHHH
T ss_conf 96277654535678549968999999999999999999999999549989998788778999999986980363479888
Q ss_pred HHHHHHHHCCEECCCCCCCC------CCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCH
Q ss_conf 99999996997825455579------888740149999974034466688876443159999667999704999469988
Q 000225 555 LERIARCTGAQIVPSIDHLT------SQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANG 628 (1833)
Q Consensus 555 LerIAr~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~ 628 (1833)
|+|||++|||+++++++.+. +.+||+|+.|+++++++ ++++||+||+++.+|||+|||+|+
T Consensus 310 leria~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~ 376 (529)
T 3iyg_A 310 LKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKARTSASVILRGAND 376 (529)
T ss_pred HHHHHHHHCCEEECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCHH
T ss_conf 9999998599566140104531005763376543899998679-------------539999757998658999778627
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf 79999999999999999998852908707971477899
Q 000225 629 DNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLP 666 (1833)
Q Consensus 629 ~~L~evKr~l~dal~a~~~l~lE~~vl~GgGa~~~~~~ 666 (1833)
.+|+|+||+++||+++++++++++++||||||+|+++.
T Consensus 377 ~~l~E~er~l~Dal~v~r~~v~~~~iVpGGGa~E~~ls 414 (529)
T 3iyg_A 377 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALS 414 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHH
T ss_conf 79999999999999999999638908847867999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=472.39 Aligned_cols=308 Identities=19% Similarity=0.294 Sum_probs=287.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC------------
Q ss_conf 45559778863214623100489998676446510013899999999999999987187878889-91------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~-~~------------ 407 (1833)
..||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++... +.
T Consensus 85 ~~qd~e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~ 161 (543)
T 1a6d_B 85 KTQDSFVGDGTT---TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLN 161 (543)
T ss_dssp TCTTCCCTTHHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHT
T ss_pred HHCCCEECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
T ss_conf 963988788845---89999999999999999779998999999999999999999982688899877999999999852
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++......+|+ ++|+|+|++||+..||++++|++|+|++.|+.|+++++||||||+
T Consensus 162 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 240 (543)
T 1a6d_B 162 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALL 240 (543)
T ss_dssp TSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCCCCCEECCCEEEEE
T ss_conf 5424454779999999999984533368744334-448999836898122268734898317788887533138769999
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ +...+++.++++|++|++.++++|++.|+||||++++|++.|+++|.++||++++++++.+|+
T Consensus 241 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le 320 (543)
T 1a6d_B 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMD 320 (543)
T ss_dssp SSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred ECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHH
T ss_conf 24556443457743896889999999999999999999999972998999888868899999987896686468999999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|+++++++ +++++|+||+++.+|||+|||+|+.+|+|+||
T Consensus 321 ~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er 387 (543)
T 1a6d_B 321 KLAKATGASIVSTIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILVRGETEHVVDEMER 387 (543)
T ss_dssp HHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998299265551449987788763899999668-------------14999966888755999965797779999999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.++++||||||+|.++
T Consensus 388 ~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 388 SITDSLHVVASALEDGAYAAGGGATAAEI 416 (543)
T ss_dssp HHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999999999997888167864999999
No 7
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=470.55 Aligned_cols=308 Identities=22% Similarity=0.320 Sum_probs=287.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
Q ss_conf 64555977886321462310048999867644651001389999999999999998718787888991------------
Q 000225 340 DDDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR------------ 407 (1833)
Q Consensus 340 ~~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~~~------------ 407 (1833)
...||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++ ..+.
T Consensus 85 a~~qd~e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~~~~~~l~~va~tsl~ 160 (545)
T 1a6d_A 85 SKAQDTAVGDGTT---TAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-STDDATLRKIALTALS 160 (545)
T ss_dssp GGCTTTCSTTHHH---HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-CCCHHHHHHHHHHHTT
T ss_pred HHHCCCEECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
T ss_conf 9965988878804---89999999999999999879988999999999999999999986278-9999999999999873
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++......+|+ ++|+|+|++||+..||++++|++|+|++.|+.|+++++||||||+
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 239 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALI 239 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEECCCEEEEE
T ss_conf 5403454779999999999997233678753434-317999955897200278840798225788998564058879999
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ +...+++.++++|++|++.++++|++.++||||++++|++.|+++|.++||++|+++++.+|+
T Consensus 240 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le 319 (545)
T 1a6d_A 240 DSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDME 319 (545)
T ss_dssp CSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHH
T ss_pred ECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHH
T ss_conf 16777553467843996789999999999999999999999972998999878866899999998792675248999999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|++.++++ +++++|+||+++..|||+|||+|+.+|+|+||
T Consensus 320 ~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr 386 (545)
T 1a6d_A 320 KLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILIRGGTDHVVSEVER 386 (545)
T ss_dssp HHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEECCSSSTTHHHHHH
T ss_pred HHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998599254660329987778862899999558-------------34999966888745899976898899999999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.|+++||||||+|.++
T Consensus 387 ~l~DAl~~~r~a~~~g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 387 ALNDAIRVVAITKEDGKFLWGGGAVEAEL 415 (545)
T ss_dssp HHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 99999999999986898886857999999
No 8
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=470.39 Aligned_cols=308 Identities=24% Similarity=0.361 Sum_probs=287.2
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC------------
Q ss_conf 45559778863214623100489998676446510013899999999999999987187878889-91------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~-~~------------ 407 (1833)
..||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++... +.
T Consensus 87 ~~qd~e~GDGTT---tvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~ 163 (548)
T 1q3q_A 87 KTQDKEAGDGTT---TAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSIT 163 (548)
T ss_dssp HHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSC
T ss_pred HHCCCEECCCHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 953979878823---89999999999999999879988999999999999999999984588888778999999998750
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++......+|+ ++|+|+|++||+..||++++|++|+|++.|+.|+++++||||||+
T Consensus 164 sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 242 (548)
T 1q3q_A 164 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALI 242 (548)
T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCEECCCEEEEE
T ss_conf 3002455579999999999984434578754557-738999944898302389710898415778998565148879999
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ +...+++.++++|++|++.++++|++.++||||++++|++.|+++|.++||++|+++++.+|+
T Consensus 243 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le 322 (548)
T 1q3q_A 243 NEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDME 322 (548)
T ss_dssp CSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred ECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHH
T ss_conf 26767543467843996889999999999999999999999985969999867858899999998795787337999999
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|++.++++ ++++||+||+++..|||+|||+|+.+|+|+||
T Consensus 323 ~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er 389 (548)
T 1q3q_A 323 KLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILIRGGTEHVIDEVER 389 (548)
T ss_dssp HHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCEEECCCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998599475552549987788763899999668-------------33999965899976999977897678999999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.|+++||||||+|.++
T Consensus 390 ~l~DAl~~~r~a~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 390 ALEDAVKVVKDVMEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp HHHHHHHHHHHHHHSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99979999999997788056875999999
No 9
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=1.00 E-value=1 Score=470.37 Aligned_cols=308 Identities=22% Similarity=0.311 Sum_probs=286.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC------------
Q ss_conf 45559778863214623100489998676446510013899999999999999987187878889-91------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~~-~~------------ 407 (1833)
..||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++... +.
T Consensus 94 ~~qd~e~GDGTT---tvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~ 170 (553)
T 3ko1_A 94 KGQDEETADGTK---TAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLS 170 (553)
T ss_dssp HTCSSSSSTTHH---HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCCE---EEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 077520258733---69996277887699997468996177512168999999999984688777849999999987756
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++......+|+ ++|+|++++||+..||++++|++|+|++.|+.|+++++||||||+
T Consensus 171 sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 249 (553)
T 3ko1_A 171 SKAVAGAREYIADIVVKAVTQVAELRGDKWYVDL-DNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALI 249 (553)
T ss_dssp TSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCG-GGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
T ss_conf 8765018999999999999999996287169841-267889873875111314577773000137998632002458886
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ +...++++++++|+++|+.++++|++.|+||||++++|++.|+++|.++||++++++++.+|+
T Consensus 250 d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~le 329 (553)
T 3ko1_A 250 DASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLE 329 (553)
T ss_dssp CSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHH
T ss_pred CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 37533467666726870898999999998999999999999862564899615748999998875441532245152489
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|+++++++ ++++||+||+++.+|||+|||+|+.+|+|+||
T Consensus 330 ria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~-------------d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er 396 (553)
T 3ko1_A 330 KLARATGGRVVSNIDEISEQDLGYASLIEERKVGE-------------DKMVFVEGAKNPKSISILIRGGLERLVDETER 396 (553)
T ss_dssp HHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSS-------------SCCEEEESCSSSSCEEEEECCSSTTHHHHHHH
T ss_pred HHHHHHCCEEECCCCCCCHHHCCHHHHHHHHHCCC-------------CEEEEECCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 98775178342241008933333677777752386-------------50798606899754898550458888888999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.++++||||||+|+++
T Consensus 397 ~l~DAl~~~r~av~~g~iVpGGGa~e~~~ 425 (553)
T 3ko1_A 397 ALRDALGTVADVIKDGRAIAGGGAVEIEI 425 (553)
T ss_dssp HHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEECCCCEEEEHH
T ss_conf 99999998998862574401786367479
No 10
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=1.00 E-value=1 Score=468.89 Aligned_cols=305 Identities=22% Similarity=0.320 Sum_probs=285.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCC------------
Q ss_conf 4555977886321462310048999867644651001389999999999999998718787888-991------------
Q 000225 341 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE-NDR------------ 407 (1833)
Q Consensus 341 ~~~ddevGDGTT~~~s~viLa~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~is~~~~-~~~------------ 407 (1833)
..||+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++.. .+.
T Consensus 83 ~~qd~e~GDGTT---tvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~L~~va~tsl~ 159 (543)
T 3ruv_A 83 KTQEKEVGDGTT---TAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSIT 159 (543)
T ss_dssp HHHHHHTSSCHH---HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 987766488812---17999999999999998679988999999999999999999996287888887999999999852
Q ss_pred ----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEECCCEEEEE
Q ss_conf ----0148999889999985316687889999999949999923998430269981357420245788025329729991
Q 000225 408 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 483 (1833)
Q Consensus 408 ----~~w~~~L~~L~~~Av~~V~~d~~~~~~mDi~~~VkIkki~GGs~~DS~vi~GvVf~K~~a~k~M~~~i~npkILLl 483 (1833)
..|.+.|++|+++|+..|+++ ++.+|+ ++|+|++++||+..||++++|++|+|++.|+.|++.++||||||+
T Consensus 160 sK~~~~~~~~i~~livdAv~~V~~~---~g~~dl-~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~ 235 (543)
T 3ruv_A 160 GKGAEKAKEKLAEIIVEAVSAVVDD---EGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALL 235 (543)
T ss_dssp HTCGGGCCHHHHHHHHHHHHHHCCT---TSCCCG-GGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCC-CEEEEEECCCCCCCCCEEECCEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 5554215779999999999986223---787655-438999847997001046355688326667444512057479998
Q ss_pred CCCCCHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 2632200003-------693349999999999999999998705996999927958999999999499089405947799
Q 000225 484 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 556 (1833)
Q Consensus 484 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~v~kI~~~~pnVVlvek~Vs~~Al~~L~~~gI~vv~nVk~~~Le 556 (1833)
+++|+|++.+ +...++++++++|+++++.++++|++.++||||++++|++.|+++|.++||++++++++.+|+
T Consensus 236 ~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le 315 (543)
T 3ruv_A 236 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDME 315 (543)
T ss_dssp SSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 26542233456750685789999999999999999999999970997999918864899999998696799637887899
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99999699782545557988874014999997403446668887644315999966799970499946998879999999
Q 000225 557 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 636 (1833)
Q Consensus 557 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~kk~~ktli~fegc~~~~g~TIlLRG~s~~~L~evKr 636 (1833)
|||++|||++++++++++...||+|+.|+++++++ ++++||+||+++.+|||+|||+|+.+|+|+||
T Consensus 316 ~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr 382 (543)
T 3ruv_A 316 KLAKATGANVIAAIAALSAQDLGDAGLVEERKISG-------------DSMIFVEECKHPKAVTMLIRGTTEHVIEEVAR 382 (543)
T ss_dssp HHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEECCSSCSSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCEECCCCCCCHHHCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998599413441329987888561799999679-------------15999977888741689965897999999999
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 99999999999885290870797147789
Q 000225 637 VVQYGVFAAYHLALETSFLADEGASLPQL 665 (1833)
Q Consensus 637 ~l~dal~a~~~l~lE~~vl~GgGa~~~~~ 665 (1833)
+++||++++++++.++++||||||+|.++
T Consensus 383 ~l~DAl~~~r~av~~g~iVpGGGa~e~~~ 411 (543)
T 3ruv_A 383 AVDDAVGVVGCTIEDGRIVSGGGSTEVEL 411 (543)
T ss_dssp HHHHHHHHHHHHHHHCEEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEECCCCHHHHHH
T ss_conf 99999999999986688505886999999
Done!