Query 000226
Match_columns 1832
No_of_seqs 563 out of 3579
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 1E-249 3E-254 2337.7 86.4 1577 37-1811 3-1598(1598)
2 COG5253 MSS4 Phosphatidylinosi 100.0 1.9E-72 4.1E-77 654.8 15.7 381 1403-1810 215-607 (612)
3 cd00139 PIPKc Phosphatidylinos 100.0 6.8E-67 1.5E-71 615.1 28.4 256 1534-1800 53-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 2.2E-65 4.7E-70 609.8 25.2 263 1521-1799 17-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 6.2E-58 1.3E-62 536.3 23.5 252 1535-1800 95-420 (420)
6 PLN03185 phosphatidylinositol 100.0 6.1E-55 1.3E-59 554.0 26.7 260 1523-1800 384-765 (765)
7 PF01504 PIP5K: Phosphatidylin 100.0 2.7E-55 5.9E-60 507.1 18.2 222 1565-1799 2-252 (252)
8 TIGR02344 chap_CCT_gamma T-com 100.0 7.2E-48 1.6E-52 490.6 30.6 308 341-664 81-414 (525)
9 KOG0364 Chaperonin complex com 100.0 3.3E-48 7.2E-53 446.9 16.6 309 336-662 78-412 (527)
10 TIGR02339 thermosome_arch ther 100.0 4.4E-46 9.4E-51 473.6 30.7 307 341-664 81-413 (519)
11 cd03343 cpn60 cpn60 chaperonin 100.0 2.2E-45 4.7E-50 467.6 30.7 306 341-663 80-409 (517)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 3.1E-45 6.8E-50 466.2 31.3 307 341-664 88-420 (526)
13 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.1E-44 6.7E-49 457.2 31.5 306 341-663 73-410 (527)
14 PTZ00212 T-complex protein 1 s 100.0 6E-44 1.3E-48 454.4 31.5 305 336-664 86-419 (533)
15 TIGR02343 chap_CCT_epsi T-comp 100.0 7.8E-44 1.7E-48 452.9 31.0 307 341-664 92-424 (532)
16 cd03340 TCP1_eta TCP-1 (CTT or 100.0 9.4E-44 2E-48 452.6 31.0 301 341-664 81-412 (522)
17 cd03334 Fab1_TCP TCP-1 like do 100.0 1.1E-43 2.3E-48 413.4 28.8 259 387-658 2-261 (261)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 1.7E-43 3.8E-48 448.8 32.2 304 341-664 81-419 (531)
19 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.9E-43 4.1E-48 449.4 31.0 306 341-664 73-409 (515)
20 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.1E-43 6.6E-48 446.8 32.4 300 341-664 80-407 (517)
21 TIGR02342 chap_CCT_delta T-com 100.0 3.9E-43 8.4E-48 445.9 30.9 311 336-664 68-410 (517)
22 TIGR02345 chap_CCT_eta T-compl 100.0 7E-43 1.5E-47 444.0 29.0 301 341-663 82-412 (522)
23 TIGR02340 chap_CCT_alpha T-com 100.0 1.4E-42 3.1E-47 442.5 31.8 307 341-664 77-415 (536)
24 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.4E-43 1.6E-47 439.6 27.1 274 341-664 81-373 (480)
25 TIGR02341 chap_CCT_beta T-comp 100.0 3.9E-41 8.4E-46 427.1 32.6 300 341-664 81-408 (519)
26 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 6.5E-41 1.4E-45 422.1 25.7 282 341-664 77-376 (484)
27 KOG0361 Chaperonin complex com 100.0 2.9E-41 6.3E-46 383.0 20.2 307 335-664 78-416 (543)
28 TIGR02346 chap_CCT_theta T-com 100.0 8E-40 1.7E-44 416.2 31.3 309 335-664 76-411 (531)
29 cd00309 chaperonin_type_I_II c 100.0 2.6E-39 5.7E-44 407.3 27.3 269 341-663 73-358 (464)
30 KOG0363 Chaperonin complex com 100.0 2.5E-39 5.4E-44 365.2 22.2 321 311-662 56-410 (527)
31 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.6E-38 3.5E-43 399.6 27.2 276 336-663 67-362 (472)
32 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.6E-38 3.5E-43 402.7 26.0 300 341-663 54-377 (485)
33 COG0459 GroL Chaperonin GroEL 100.0 2.7E-38 5.9E-43 396.1 26.1 300 341-663 76-406 (524)
34 KOG0358 Chaperonin complex com 100.0 7.4E-38 1.6E-42 354.9 20.2 313 335-664 84-427 (534)
35 KOG0360 Chaperonin complex com 100.0 1E-36 2.2E-41 355.5 17.3 312 334-662 76-419 (545)
36 KOG0359 Chaperonin complex com 100.0 1.5E-36 3.3E-41 350.3 15.1 303 341-663 82-409 (520)
37 PRK00013 groEL chaperonin GroE 100.0 3.7E-35 8E-40 372.6 27.4 276 341-664 79-421 (542)
38 PRK12849 groEL chaperonin GroE 100.0 3.7E-35 8E-40 372.6 27.2 274 341-663 79-420 (542)
39 PTZ00114 Heat shock protein 60 100.0 5.3E-35 1.1E-39 372.9 27.4 274 341-663 91-433 (555)
40 PRK12851 groEL chaperonin GroE 100.0 7E-35 1.5E-39 370.4 26.5 275 341-663 80-421 (541)
41 TIGR02348 GroEL chaperonin Gro 100.0 1E-34 2.2E-39 368.4 26.7 275 341-664 78-420 (524)
42 cd03344 GroEL GroEL_like type 100.0 1.9E-34 4.1E-39 365.3 27.9 274 341-663 77-418 (520)
43 PRK12850 groEL chaperonin GroE 100.0 6.5E-34 1.4E-38 361.8 27.3 275 341-663 80-421 (544)
44 PRK12852 groEL chaperonin GroE 100.0 5.9E-34 1.3E-38 363.0 26.4 275 340-663 79-421 (545)
45 CHL00093 groEL chaperonin GroE 100.0 3E-33 6.6E-38 355.3 24.6 277 340-663 78-420 (529)
46 PRK14104 chaperonin GroEL; Pro 100.0 5.9E-33 1.3E-37 352.9 26.1 275 341-664 80-422 (546)
47 cd03333 chaperonin_like chaper 100.0 1.1E-32 2.4E-37 312.2 23.9 193 407-650 17-209 (209)
48 PLN03167 Chaperonin-60 beta su 100.0 2E-33 4.3E-38 358.9 19.8 290 340-664 134-476 (600)
49 KOG0362 Chaperonin complex com 100.0 5.8E-31 1.3E-35 309.9 23.9 304 338-664 88-414 (537)
50 KOG0357 Chaperonin complex com 99.9 1.2E-27 2.6E-32 270.3 11.9 204 341-663 84-287 (400)
51 KOG0356 Mitochondrial chaperon 99.8 1.9E-19 4E-24 216.8 17.5 284 341-663 93-435 (550)
52 PF01363 FYVE: FYVE zinc finge 99.6 1.2E-15 2.5E-20 143.1 2.3 68 31-102 1-68 (69)
53 smart00064 FYVE Protein presen 99.4 4.3E-14 9.3E-19 132.2 3.7 67 30-102 1-67 (68)
54 PTZ00303 phosphatidylinositol 99.3 4.2E-13 9.1E-18 163.6 4.4 77 28-104 448-532 (1374)
55 KOG1729 FYVE finger containing 99.3 1.9E-13 4.2E-18 159.2 1.5 72 25-103 154-226 (288)
56 KOG1819 FYVE finger-containing 99.3 3.7E-13 8E-18 157.6 2.3 70 25-100 887-961 (990)
57 KOG1818 Membrane trafficking a 99.2 2.6E-12 5.6E-17 160.3 2.8 66 30-104 159-224 (634)
58 cd00065 FYVE FYVE domain; Zinc 99.0 1.6E-10 3.5E-15 104.2 2.2 55 39-99 2-56 (57)
59 KOG1842 FYVE finger-containing 98.8 5.7E-10 1.2E-14 132.1 -1.6 72 32-104 173-261 (505)
60 KOG1841 Smad anchor for recept 98.6 1.4E-08 3.1E-13 130.8 4.2 53 27-79 545-597 (1287)
61 KOG1843 Uncharacterized conser 98.4 2.1E-07 4.5E-12 109.9 4.2 67 29-102 150-219 (473)
62 KOG1409 Uncharacterized conser 98.0 1.7E-06 3.7E-11 100.7 1.6 71 25-104 271-352 (404)
63 KOG4424 Predicted Rho/Rac guan 97.5 5.7E-05 1.2E-09 93.5 3.8 61 31-100 409-470 (623)
64 KOG1811 Predicted Zn2+-binding 97.2 4.3E-05 9.3E-10 93.5 -2.8 67 29-101 312-383 (1141)
65 KOG0230 Phosphatidylinositol-4 94.1 0.042 9.2E-07 75.3 4.5 99 921-1033 659-757 (1598)
66 PF02318 FYVE_2: FYVE-type zin 94.0 0.03 6.5E-07 58.6 2.2 52 39-103 54-106 (118)
67 KOG1729 FYVE finger containing 88.0 0.12 2.6E-06 61.7 -0.8 69 31-100 12-81 (288)
68 KOG1841 Smad anchor for recept 84.2 0.84 1.8E-05 61.6 3.8 55 30-103 648-702 (1287)
69 KOG0993 Rab5 GTPase effector R 78.2 0.14 3.1E-06 61.6 -5.5 68 32-107 461-530 (542)
70 PRK00464 nrdR transcriptional 62.9 3.5 7.5E-05 45.4 1.2 17 1151-1167 112-128 (154)
71 PF07975 C1_4: TFIIH C1-like d 56.9 2.4 5.2E-05 38.0 -1.1 29 41-69 1-35 (51)
72 PF09538 FYDLN_acid: Protein o 55.9 7 0.00015 40.5 1.9 33 30-65 3-36 (108)
73 KOG3576 Ovo and related transc 54.6 3.4 7.4E-05 46.3 -0.6 35 35-69 113-159 (267)
74 TIGR02300 FYDLN_acid conserved 54.5 7.5 0.00016 41.1 1.8 33 30-65 3-36 (129)
75 TIGR00622 ssl1 transcription f 49.4 11 0.00024 39.2 2.1 33 38-70 54-96 (112)
76 KOG4275 Predicted E3 ubiquitin 47.6 3.2 6.9E-05 48.9 -2.3 52 34-100 39-90 (350)
77 KOG0978 E3 ubiquitin ligase in 47.4 2.7 5.8E-05 55.7 -3.3 42 38-98 642-685 (698)
78 PF13717 zinc_ribbon_4: zinc-r 45.8 11 0.00023 31.5 1.1 25 41-65 4-35 (36)
79 PF13719 zinc_ribbon_5: zinc-r 45.7 11 0.00023 31.6 1.1 26 40-65 3-35 (37)
80 PF07450 HycH: Formate hydroge 45.3 9.5 0.00021 40.5 0.9 22 1726-1754 24-45 (131)
81 PRK15084 formate hydrogenlyase 44.2 11 0.00023 40.2 1.1 22 1726-1754 26-47 (133)
82 COG1997 RPL43A Ribosomal prote 42.5 22 0.00048 35.2 2.9 43 915-986 32-74 (89)
83 cd01143 YvrC Periplasmic bindi 41.7 59 0.0013 36.2 6.7 52 513-564 53-111 (195)
84 PLN02667 inositol polyphosphat 41.4 37 0.0008 41.3 5.2 70 1586-1670 23-99 (286)
85 PF02579 Nitro_FeMo-Co: Dinitr 40.8 71 0.0015 31.4 6.4 46 513-559 46-91 (94)
86 KOG0320 Predicted E3 ubiquitin 40.7 3.8 8.2E-05 45.4 -2.9 49 38-102 130-178 (187)
87 smart00154 ZnF_AN1 AN1-like Zi 39.2 16 0.00034 31.1 1.2 26 42-69 1-26 (39)
88 PF15135 UPF0515: Uncharacteri 37.4 53 0.0011 38.5 5.3 36 33-68 126-168 (278)
89 PRK09534 btuF corrinoid ABC tr 37.2 67 0.0014 40.3 6.8 52 513-564 112-170 (359)
90 TIGR03659 IsdE heme ABC transp 37.0 60 0.0013 39.1 6.2 52 513-564 84-141 (289)
91 cd01144 BtuF Cobalamin binding 36.4 82 0.0018 36.7 7.0 52 513-564 50-108 (245)
92 PF06296 DUF1044: Protein of u 36.2 1.3E+02 0.0028 32.0 7.6 78 1541-1618 2-107 (120)
93 KOG2164 Predicted E3 ubiquitin 35.8 11 0.00023 48.2 -0.5 51 40-103 187-237 (513)
94 PF01485 IBR: IBR domain; Int 34.4 27 0.00058 31.9 2.0 34 39-72 18-57 (64)
95 cd00851 MTH1175 This uncharact 31.6 94 0.002 31.1 5.6 38 512-550 55-92 (103)
96 PHA02768 hypothetical protein; 29.8 23 0.0005 32.4 0.7 25 41-65 7-41 (55)
97 PF09947 DUF2180: Uncharacteri 29.8 23 0.00051 33.7 0.8 61 41-101 2-66 (68)
98 PRK00420 hypothetical protein; 28.9 32 0.00069 36.1 1.7 25 40-64 24-49 (112)
99 COG1433 Uncharacterized conser 27.7 1.6E+02 0.0034 31.5 6.5 51 512-563 57-107 (121)
100 cd01138 FeuA Periplasmic bindi 27.7 1.1E+02 0.0023 35.9 6.0 51 513-564 59-113 (248)
101 COG5151 SSL1 RNA polymerase II 27.7 24 0.00052 42.1 0.6 38 33-70 356-403 (421)
102 PF01497 Peripla_BP_2: Peripla 26.2 1.6E+02 0.0034 33.9 7.0 52 513-564 53-112 (238)
103 PF10571 UPF0547: Uncharacteri 26.1 32 0.0007 26.7 0.9 23 41-65 2-24 (26)
104 cd00562 NifX_NifB This CD repr 25.6 1.4E+02 0.0031 29.7 5.8 37 513-550 54-90 (102)
105 PRK00398 rpoP DNA-directed RNA 25.4 39 0.00084 29.5 1.3 26 40-65 4-31 (46)
106 KOG3799 Rab3 effector RIM1 and 24.8 28 0.00061 36.9 0.4 51 40-101 66-117 (169)
107 cd04743 NPD_PKS 2-Nitropropane 24.6 1.8E+02 0.004 36.0 7.3 56 511-567 73-128 (320)
108 PF12226 Astro_capsid_p: Turke 23.8 47 0.001 36.6 1.9 50 1540-1595 102-154 (230)
109 KOG3795 Uncharacterized conser 23.7 38 0.00082 37.4 1.2 23 48-70 8-33 (230)
110 PF07282 OrfB_Zn_ribbon: Putat 23.4 54 0.0012 30.9 2.0 28 38-65 27-56 (69)
111 KOG3173 Predicted Zn-finger pr 23.1 36 0.00077 38.2 0.9 28 39-69 105-132 (167)
112 cd01146 FhuD Fe3+-siderophore 22.7 1.7E+02 0.0038 34.3 6.6 52 513-564 58-115 (256)
113 TIGR02098 MJ0042_CXXC MJ0042 f 22.1 48 0.001 27.5 1.3 13 41-53 4-16 (38)
114 smart00647 IBR In Between Ring 21.7 63 0.0014 29.5 2.1 35 38-72 17-57 (64)
115 PRK03564 formate dehydrogenase 21.3 75 0.0016 39.0 3.2 61 39-101 187-262 (309)
116 PRK03379 vitamin B12-transport 21.0 1.7E+02 0.0038 34.7 6.1 51 513-563 65-122 (260)
117 PRK00432 30S ribosomal protein 20.4 68 0.0015 28.9 1.9 28 39-66 20-48 (50)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-249 Score=2337.69 Aligned_cols=1577 Identities=49% Similarity=0.750 Sum_probs=1147.6
Q ss_pred CCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhcccCCCCCCCCCC
Q 000226 37 QSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQGIGALDNGTTQAP 116 (1832)
Q Consensus 37 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~~~~~~~~~~~~~ 116 (1832)
..+..|+.|+ +..+||||||.||++||++|. +.. ...+|||+.|+.++.+.......
T Consensus 3 ~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~------~~~--------~~~i~~~~~~~~~~~~~~~~~~~------ 59 (1598)
T KOG0230|consen 3 QSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQ------DSP--------ETSIRVCNECRGQWEQGNVAPSD------ 59 (1598)
T ss_pred ccccchhccc---cccccCCCCcccCceeccccC------CCC--------ccceeehhhhhhhccccCCCCcc------
Confidence 5567899999 788999999999999999997 111 24899999999998776433311
Q ss_pred CCCCCCCCCcCCccCCCCCCccccCCCCccCCcCCCCCccccCCcCCCCCCCcccCChhhHhhhhccccCCCCCccceec
Q 000226 117 SPGLSPSASATSLASTKSSCTCYSSSGTVSSTPYSTGPYQHVPYTSCVSPRQSEQMDPLIVEQENVKSESSTNSSAAIVV 196 (1832)
Q Consensus 117 s~~~s~s~s~~s~~s~~ss~t~~ss~~~~~s~~~s~g~~~~~~~ss~~s~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~ 196 (1832)
...++++.. ++ .+. +.++.+ +++. .+-.-++ . -+..+.++...-+|.-++.-+..- ...-+.
T Consensus 60 --~~~~~~~~~---~~-~s~-~~~s~s-l~s~--~n~r~~~---~----m~d~s~~ec~~~~~~~~t~Rr~~~-~~gqi~ 121 (1598)
T KOG0230|consen 60 --RVHTSPSPT---AN-VST-ASNSSS-LASS--LNYRDKE---N----MPDSSSKECYDCEQKFETFRRKHH-CCGQIF 121 (1598)
T ss_pred --eeccCCCCC---CC-ccc-ccccch-hhcc--cCccccc---c----CCccccchhhhhccchhhhhcccc-cCcccc
Confidence 111111111 00 111 111111 2211 1111111 1 233344566666665444433331 111022
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCccccCccccCCCceecccccccccccccccCCccccccc
Q 000226 197 NSSSNQSGFSMNSDDEDDDYRIYTSDLDTRQYSLPNDYYGDVNIDNIDHTYGAQEVDHVRENINRRSLSCELSENFDTQG 276 (1832)
Q Consensus 197 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1832)
..++ -.|...|+|.|.|.++.|+.|-...|.+..+.||++..-++.+++...+.+..-++..-++..+.+.+.+....+
T Consensus 122 ~ss~-~~~~~~~~~~e~d~c~~~~~~~~~sss~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~p~~~~~~~l~ 200 (1598)
T KOG0230|consen 122 CSSC-IDGMSIRCDGELDYCSRYVEDFAKSSSSEMNQYDGPLQQNKHDDVPRARLGRKTSVGYEESLSSFPYTSDLNSLL 200 (1598)
T ss_pred CCcc-cCCcccccccccchhHHHhhhhhccCCcCCCccccchhccCCCCCcccccccccccccccccCCCCCchhHHHHH
Confidence 2233 466677999999999999999999999999999999999888888887777655554322333333223333333
Q ss_pred ccccccccccccCCCCccccCC-CCccccccccCCCCccCCCccccCCCCCCchhhhhhcccccccccCC-cCCcccccc
Q 000226 277 LKKIKEHGDKIHERYDVDECEA-PLYDEEATEYEPVDFEKEGLLWIPPEPADEEDEREAILFDDDDDEGG-TGEWGYLRS 354 (1832)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~w~pp~p~~~~d~~~~~~~~~~~~dde-vGDGTT~~~ 354 (1832)
-......+. +++...+.+|. +.+..++...+++||++||++|.||+|++|+||+|++++++|+++.+ -|.|+.++.
T Consensus 201 ~~~~~~s~~--~~n~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~p~~pene~dd~~~~~~~~~~~~~D~~~~~~~~~~ 278 (1598)
T KOG0230|consen 201 QESNEKSQR--DENCGRSVIEFSSPNDEEEDEVEILDFENNGLLWEPPEPENEEDDAESVLADDDDDEGDTSGKWNPLRL 278 (1598)
T ss_pred hhhhhhccc--CccccccccccCCccccccccccccchhhccCCCCCCCCCcccccchhccccccccccccccccccccc
Confidence 332222222 24566788886 46666666668999999999999999999999999999775544333 366666554
Q ss_pred ceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCC
Q 000226 355 SNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEAATLLKPDMSKCGGM 434 (1832)
Q Consensus 355 s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~~~w~~~l~~L~~eA~~~V~~d~~~~~~m 434 (1832)
+...-+.+...+.....+....+..+..+|+++++++|+..+.+++..+....+|.++++.|+|+|+..++|+.+.++.|
T Consensus 279 s~s~s~~~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~m 358 (1598)
T KOG0230|consen 279 SNSFSAPEYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLM 358 (1598)
T ss_pred cCccCCCCccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCc
Confidence 44454444444444455555678889999999999999999999887766778999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecccccccccccChhhHHHHHHHHHHHHHHHHH
Q 000226 435 DPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHLSSVDTLLQQEMDHLKMAVT 514 (1832)
Q Consensus 435 Di~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~ 514 (1832)
||.+|||||||+||+..||++|+||||.|+++||+|.+++++|||||+.|+|+|+|+.+++.|+++++.||++||+.+|+
T Consensus 359 d~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~va 438 (1598)
T KOG0230|consen 359 DPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVA 438 (1598)
T ss_pred CcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccc
Q 000226 515 KIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGS 594 (1832)
Q Consensus 515 rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~ 594 (1832)
+|.+.+||||+|+|+|+++|+++|...||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++|
T Consensus 439 rI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h-- 516 (1598)
T KOG0230|consen 439 RIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH-- 516 (1598)
T ss_pred HHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCCCCCCCccccC
Q 000226 595 AGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQLPLKSPITVAL 674 (1832)
Q Consensus 595 ~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~~~~~~~~~~~ 674 (1832)
+..||+|||+||++++||||+|||++.++|+++|++++++++|+||+++|.+|++|.||++.........++..
T Consensus 517 ------k~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~ 590 (1598)
T KOG0230|consen 517 ------KPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVET 590 (1598)
T ss_pred ------cchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceecc
Confidence 45799999999999999999999999999999999999999999999999999999999998654443332322
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCcchhhhccccccccccccccccccccccCCCCCCcccCCCCCCCCCCCCCc
Q 000226 675 PVKPSNIDRSISTIPGFMTPATGKPLSPKLNNELQKSNKGLISNSLSTTNVKSLSSFEGDNSTSHLEGPHSQNMDMQPSL 754 (1832)
Q Consensus 675 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~ 754 (1832)
+ ...+.++++|+++..++..........++..++..+ ..+..+.+|...+++
T Consensus 591 ~----~~~~~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~------------------------~~~~ls~sp~~~~~~ 642 (1598)
T KOG0230|consen 591 S----IINRSISTSPGETDSTAEKAPVEALQVEPNRFNGAL------------------------SSELLSSSPFLEFPL 642 (1598)
T ss_pred c----ccccccccCCCCCcchhcccchhhhccchhhhhccc------------------------ccceeecccccccCC
Confidence 2 345677888877654443332111122223333222 222333444333333
Q ss_pred chhhhccccccccCc------ccc-cccccccCCCCCCCchhhhhcCCCcccccccccccccCCCCCCCCccc-cccccc
Q 000226 755 SSTEATASSISLYPT------KQD-ISNFYQKDSSPKHASKEEIKVGPKESLKFLMDDNAVSNCFGTTEPSRR-VAGWSL 826 (1832)
Q Consensus 755 ~~~~~~~~~~~~~~~------~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 826 (1832)
+. ....+..-+++. ++. ...++.+.... ...-.++ ...+..+ +.+ ...+ .....-
T Consensus 643 ~~-~~i~P~~~~~e~~~~~~~~~~~~~~lv~~~es~--------~~~~~~s-----~~~~~~~-l~e--~~~~~~~~~~~ 705 (1598)
T KOG0230|consen 643 DL-LEIAPGELVIETRLSSYSKGPKQNGLVPAHESV--------LNDLHES-----TLSILSK-LPE--TRSGTHEGNED 705 (1598)
T ss_pred Cc-cccCCccceeecchhhhcCchhhcccccccccc--------ccccccc-----ccccccc-ccc--hhcccchhccc
Confidence 30 010110000111 000 00111100000 0000000 0000000 000 0000 000000
Q ss_pred ccCccccccCCCCcccccccccccCcccccCCCCCCCCCCCCCCceEEEEEeeeecCCCCccCCCeEEEEeccCCCCCcH
Q 000226 827 VDGNAFASNHQASPELVSSKQDSNNNNEERGSSKEEFPPSPSDHRSILVSLSTRCVWKGSVCERPHLFRIKYYGSTDNPL 906 (1832)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~hQsI~Vl~Ss~~~~~~~~C~~p~l~~i~fY~~~D~tL 906 (1832)
+++ ...+.....+..+ ...+++.. ..++.++|.+||+|+||||++|++++.+|++|||++|+|||++|+||
T Consensus 706 k~~----~~~~~~~~~~~~~--~~~~~e~~---~s~~~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~l 776 (1598)
T KOG0230|consen 706 KGP----GLEPELANNQNIQ--RPEETEEQ---SSKDALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPL 776 (1598)
T ss_pred cCc----ccccccccccccc--chhhhhhh---hcccCCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccchH
Confidence 000 0000001000000 00122222 45667799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEec
Q 000226 907 GRFLRDNLFDQSYRCRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVVM 986 (1832)
Q Consensus 907 G~fLe~~~~~~~~~C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~m 986 (1832)
||||+++||++.|.|++|.+||++|+|||||++|+++|+|++++.. +||+.+|+|||||||++|++. ||+|++|+|
T Consensus 777 g~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~ 852 (1598)
T KOG0230|consen 777 GRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVKKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVM 852 (1598)
T ss_pred hHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEeeccccc-cccccCceEEEEeccccCCCC---CCCcceeEc
Confidence 9999999999999999999999999999999999999999999876 999999999999999999975 899999999
Q ss_pred cchhhcccHHHHHhhhccCccccCCcCCCCCccccceeeccccCCeEEEEEEeeeeeeEEecCCCceeccccchhhHHHH
Q 000226 987 SDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGFGQMVACFRYASIDVNSVYLPPPKIEFNYDTQGWIKEE 1066 (1832)
Q Consensus 987 S~~tw~lSFGKfLEL~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~va~f~y~~I~v~ev~lPp~~l~~~~~~~~~l~~e 1066 (1832)
|++||++||||||||+||+|++++|+++|||+||||||||||||+|||+|+|++|++|+|++||.+|+|++..++|+++|
T Consensus 853 Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~~~~~~~~~~e 932 (1598)
T KOG0230|consen 853 SDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFNHIQQEWLQEE 932 (1598)
T ss_pred chhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhhhcccCCceeeeeeccceeEEEeCChhhcccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchhh
Q 000226 1067 ANEVRRRAELLFKDVRHTLQDLSKKIAVGSEDGSMKTAEARVHISELEGMQQKDEVEFEESLQQALCKEVKLGLPAIDIL 1146 (1832)
Q Consensus 1067 ~~~v~~k~~~~~~~V~~~L~~i~~~~~~~~~~~~~~~~~~~~~i~el~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~il 1146 (1832)
.++|+.|++.+|++|.++|.+|+.+. . + +..|.+|+.+|.+|+.+|++.|+.++.+....+++.+|+|
T Consensus 933 ~k~v~~k~~~~~n~v~~~l~~i~~~~---~-----~----~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l 1000 (1598)
T KOG0230|consen 933 IKEVIEKGEELYNEVLERLSRIAEKD---E-----N----RPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDIL 1000 (1598)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc---c-----c----cchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHH
Confidence 99999999999999999999999861 1 1 3468899999999999999999999998887788999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhhhhhcccCCcCccccccCCCCCCCCCCcccccCCC--CCCCCCccccCCCccCC
Q 000226 1147 EINRLRRQILFHSCVWDQRLIRAASLVNSYLREGTNAFVPKLKEKPVSPVEKPVDVNAAFK--PSKGFSSFVSLPLEVKP 1224 (1832)
Q Consensus 1147 ~lN~l~r~l~~~~~~Wd~rl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 1224 (1832)
.+|++||.|++.++.|+.+|+.+..+.| |..... +..++. .+. ........ +.+.......
T Consensus 1001 ~l~~~rr~l~~~s~~w~~~l~s~~~~~k--~~~~~~---~~~~~~-~~~----~~~~~~r~p~~~k~~~~~~~------- 1063 (1598)
T KOG0230|consen 1001 ALNRDRRALLASSYLWDERLISLSKSLK--LESSKD---TKPKES-ETN----STAKRKRSPEPQKGVDEDSF------- 1063 (1598)
T ss_pred HHHHHHHHHHhhhccccccchhhhhhhc--cccccc---cccccc-ccc----CccccccCchhhcccccccc-------
Confidence 9999999999999999999998776666 221110 000100 000 00000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCccccccCCCCCCCCccccccccCCCCCCCCCCCCccchhhhhccccCCCCcccccchhhhhcccc
Q 000226 1225 GAHCNRGISGDIHEPHRVQKESGVDQDPSYKEADQFLSSSESVSYKPEPQESGKLVRRALSDGEFPKMADLSDTLDAAWT 1304 (1832)
Q Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~e~~~~~rr~~~~~~~~~~~~~s~~~d~~~~ 1304 (1832)
.++++...........+.+.+.. ... ......+....+.....+..+.++.+.+... .....+.+.++++|.
T Consensus 1064 --~~~~~s~~~~~~~~~lp~~~~s~----~~d-~~~~~~~~~~~~~~s~~~~~~~v~n~~s~~~-~~~~~~~~~l~~~~~ 1135 (1598)
T KOG0230|consen 1064 --LTDSSSDVSSLEHLNLPLPEDSN----STD-TGLSGPSEVLEDNESIDEMLGSVRNTYSLAN-KVRKILKQILDSATI 1135 (1598)
T ss_pred --ccccccccCccccccCCCCCccc----ccc-hhccCcccccccccchhhcccccccccchhh-HHHHHHHHhcccccc
Confidence 00010000000000000000000 000 0000000000000000111122222222211 123345566666676
Q ss_pred CCCCCCcccCccCCCCCCCCCccccccccccccccccccCCceeeeccCccccccCCCCCCCcccccCCCchhhhh-hhc
Q 000226 1305 GENHPANVIGKESGYSLPDPTLVDSSSKLNSVAASTAEQGGLEVVRSLSSVSSTKGTENMTNSRSLVGMPFSSFYS-SFN 1383 (1832)
Q Consensus 1305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 1383 (1832)
+.+..+..+| .......+ + .+. .....+- ...+...|++.||.+++. ...
T Consensus 1136 g~r~~~~~~P------------------~s~~~~~~-~-------~~~-~~~~~~~--~e~~~~~~~e~~~~~~~~~~~~ 1186 (1598)
T KOG0230|consen 1136 GNRANPKSSP------------------FSGQDHST-D-------LPL-ESNPIHV--LEKELSSWIEDPLTNMYYREAT 1186 (1598)
T ss_pred cccccCCCCC------------------Cchhhhcc-c-------ccc-ccCCccc--cccccHHHHhhhhhhHhHHHHH
Confidence 6543311111 00000000 0 000 0000010 112456799999998765 554
Q ss_pred ccCcccccccc-cccCCCcccCcchhhhhccCccccccCCCCCceeeecCCCchhhhhhccCChhHHHHHHHHHHhhhhh
Q 000226 1384 KNSSLNAQKLT-VSEYNPTYVMSLWDSERLSGARLFLPVGVNDTIVPVYDDEPTSVIVYTLVSSDYHVQISEFERAKDAA 1462 (1832)
Q Consensus 1384 ~~~~~~~~k~~-l~~~~p~~~s~~~~~~~~~~~~l~~P~~~~d~~V~V~edEPSSiIAyaLsS~dY~~~l~~~~~~~~~~ 1462 (1832)
+......++.. .....|+++++......+.+++|++|++.+|.+|+||||||+|+|||||++++|..+..+.
T Consensus 1187 ~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p------- 1259 (1598)
T KOG0230|consen 1187 KELSLNSQKNSAETKEPPKYPSSESESEPESSSRLLLPLGLNDLVVPVYEDPPPSLIAYALSSKERINQESSP------- 1259 (1598)
T ss_pred HHHHhhcchhhcccccCCcCcccccccccccccceeccccCCcccCCcccCCCchhhhhhhcchhhccCCCCC-------
Confidence 44444445543 2367788888876666688999999999999999999999999999999998877554220
Q ss_pred hhccccccccccccccccccCCCCccccccccccccccc---ccCCCCCCCCCCCCcc--CCCceeEEEecCCCCCccee
Q 000226 1463 DSAAASAIFDSVNLLSVSSFDDTTSDRDKSLGSADEAVF---STSGSRGSQVLDPLSY--TKDLHARISFTDDGLLGKVK 1537 (1832)
Q Consensus 1463 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~---~~~~~~~~~~~~~~~~--~~~~h~~~~f~~~~~~~~~~ 1537 (1832)
..+.....+ + .....++. ..+.+.-+... .+.++......+.+.. ....|++++|.+ |+++
T Consensus 1260 --~~sis~~~S-~------~~~~~s~~-~e~~~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~e----gk~k 1325 (1598)
T KOG0230|consen 1260 --GLSISFSLS-N------LQGRLSKI-SEFDDTKSESLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSE----GKAK 1325 (1598)
T ss_pred --Ccccccccc-c------cccchhhh-hhhhhhhhccccccccchhhhcchhhccccccccccceeeeccC----CceE
Confidence 000000000 0 00000000 00000000000 1111111111222222 445788888877 5699
Q ss_pred EEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHHh
Q 000226 1538 YTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLSE 1617 (1832)
Q Consensus 1538 ~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~~p~Yf~y~~~ 1617 (1832)
|+|++|||++|++||+.||.++++||+||+||.+|.++||||||+|+||.|+|||||+|++.|+++|++|||+||+||.+
T Consensus 1326 ~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~ 1405 (1598)
T KOG0230|consen 1326 YSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTE 1405 (1598)
T ss_pred EEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEeeeecccCCCccceeeeCCCCcccccccCCCCCcccccchhhhhhC
Q 000226 1618 SISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRRNITRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAM 1697 (1832)
Q Consensus 1618 ~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~ 1697 (1832)
+++++.||+||||||+|||.+|+.++|++.||++||||||||+++++|+||||||+|||+++.+++.+.||||+||++++
T Consensus 1406 s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmVMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~ 1485 (1598)
T KOG0230|consen 1406 SISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMVMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMM 1485 (1598)
T ss_pred HHhcCCcchhhhhheeEEEEEecCCCCceeEeeeeeehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeecccceeeeehhhhhhccchhhHHHHhhhhhcccCCCCCC
Q 000226 1698 PTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNT 1777 (1832)
Q Consensus 1698 ~~~~i~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~ 1777 (1832)
+++||||++++|+.|.++|||||.||+++||||||||||||+++++||+||||||||||||||||+|||..| +||+++.
T Consensus 1486 ~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSLLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sG-l~gpk~~ 1564 (1598)
T KOG0230|consen 1486 WTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSLLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSG-LGGPKNK 1564 (1598)
T ss_pred hcCCeeehHhHHHHHHHHHhcchHHhhhcccceeeeEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccc-cccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6888999
Q ss_pred CCcccChHHHHHHHHHHHHHhcccCCCccCCCcc
Q 000226 1778 SPTVISPQQYKKRFRKAMTTYFLMLPEQWTPPSI 1811 (1832)
Q Consensus 1778 ~~Tvv~P~~Y~~RF~~~m~~~f~~vp~~W~~~~~ 1811 (1832)
.||||+|++|++||++||++|||+|||+|+++|.
T Consensus 1565 ~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg~g~ 1598 (1598)
T KOG0230|consen 1565 QPTVVSPEQYKTRFRKAMDTYFLMVPDQWTGLGV 1598 (1598)
T ss_pred CCceeCHHHHHHHHHHHHhheeeecCCcccCCCC
Confidence 9999999999999999999999999999999863
No 2
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-72 Score=654.83 Aligned_cols=381 Identities=34% Similarity=0.546 Sum_probs=315.6
Q ss_pred cCcchhhh-hccCccccccCC-----CCCceeeecCCCchhhhhhccCChhHHHHHHHHHHhhhhhhhcccccccccccc
Q 000226 1403 VMSLWDSE-RLSGARLFLPVG-----VNDTIVPVYDDEPTSVIVYTLVSSDYHVQISEFERAKDAADSAAASAIFDSVNL 1476 (1832)
Q Consensus 1403 ~s~~~~~~-~~~~~~l~~P~~-----~~d~~V~V~edEPSSiIAyaLsS~dY~~~l~~~~~~~~~~~~~~s~~~~~~~~~ 1476 (1832)
++.||+.+ +..+.++.+|.+ +.|+.|+++||||||+|||+|+++||+.++...++.+ .++...- ..
T Consensus 215 ls~~~~e~nS~n~~p~~~~s~p~~~~~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se-~~De~~l----~~--- 286 (612)
T COG5253 215 LSNFWAERNSYNWKPLVYPSCPSEHIFSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSE-TMDERLL----NG--- 286 (612)
T ss_pred hhhhhccccccCCCCccCCCCCCCCCcCccccccccCCcchhhhccccchhHHHHHHhhhhhh-cchhhhc----cc---
Confidence 45666654 233345555544 4688899999999999999999999999997654421 1111100 00
Q ss_pred ccccccCCCCcccccccccccccccccCCCCCC--CCCCCCccCCCceeEEEecCCCCCcceeEEEEEcCHHHHHHHHHH
Q 000226 1477 LSVSSFDDTTSDRDKSLGSADEAVFSTSGSRGS--QVLDPLSYTKDLHARISFTDDGLLGKVKYTVTCYFAKRFDALRRM 1554 (1832)
Q Consensus 1477 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~--~~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~ 1554 (1832)
.....+++++.....++..+ +.. .....|...++.|++++|+.+ .+.|+|++|||++|+.||++
T Consensus 287 -------~~le~gh~n~~~synmltgi---rvtlsr~e~iM~~~tdth~~e~~~eg----~~~~s~K~y~~e~Fr~lR~l 352 (612)
T COG5253 287 -------MPLEGGHRNPQESYNMLTGI---RVTLSRIEEIMIKKTDTHLNEQFEEG----LYEFSCKDYFPEVFRELRAL 352 (612)
T ss_pred -------cccccccccchhhhhhhhhh---HHHHHHHHHHhcCCcCccchhhcccc----ceeeeHHhhCHHHHHHHHHH
Confidence 00123345554333333222 211 123456777899999999874 58999999999999999999
Q ss_pred cCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEE
Q 000226 1555 CCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIY 1634 (1832)
Q Consensus 1555 ~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y 1634 (1832)
||+++. |+.++++|..|...|||||||||||.|.|||||||++.|+..|+.++-+|+.|+.. ++.|+||||||+|
T Consensus 353 ~g~~~a-lvsl~sryil~E~~~GKSGSff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~----np~T~l~ki~G~y 427 (612)
T COG5253 353 CGCDEA-LVSLLSRYILWESNGGKSGSFFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLF----NPLTLLCKIFGFY 427 (612)
T ss_pred hCCcHH-HHHHHhhhheeccCCCcccceEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHc----CchHHHHHHhcee
Confidence 999886 99999999999999999999999999999999999999996655555555555554 4669999999999
Q ss_pred EEeeec-cCCCceEEEEEeeeecccCCCccceeeeCCCCcccccccCCCCCcccccchhhhhhCCCCCeeeChHHHHHHH
Q 000226 1635 QVASKH-FKGGKESKMDLLVMENLLFRRNITRLYDLKGSSRSRYNADTSGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLE 1713 (1832)
Q Consensus 1635 ~v~~~~-~~~g~~~k~~~iVMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~L~ 1713 (1832)
+|+++. ...++..|+||||||||||.+.|+++|||||||+||++..+++...||+|+|.++.++++|+++.+..|+.|+
T Consensus 428 rv~~~~s~~~~k~~K~~fiVMeNlf~~~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~ 507 (612)
T COG5253 428 RVKSRSSISSSKSRKIYFIVMENLFYPHGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLL 507 (612)
T ss_pred EEeccccccccccceeEEEEecccCCCCCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHH
Confidence 999987 4567889999999999999988999999999999999999999999999998888888999999999999999
Q ss_pred HHHHhhHHHHhhcCccccceeEeeecccceeeee-hhhhhhc-cchhhHHHHhhhhhcccCCC-CCCCCcccChHHHHHH
Q 000226 1714 RAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLG-IIDFMRQ-YTWDKHLETWVKTSGILGGP-KNTSPTVISPQQYKKR 1790 (1832)
Q Consensus 1714 ~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l~~G-IID~L~~-yt~~KklE~~~K~~~~l~g~-~~~~~Tvv~P~~Y~~R 1790 (1832)
.|||+|+.||+++||||||||||||.++.++.|| |||++|+ |||||++|.|+|..+..|+. +.+.||+|+|.+|++|
T Consensus 508 sqv~~Dv~fLsklniMDYSllVgi~~~~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nr 587 (612)
T COG5253 508 SQVWNDVLFLSKLNIMDYSLLVGIDDEREEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNR 587 (612)
T ss_pred HHHHHHHHHHHHhCccceeEEEEeccchhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHH
Confidence 9999999999999999999999999999999999 9999999 99999999999998766543 4578999999999999
Q ss_pred HHHHHHHhcccCCCccCCCc
Q 000226 1791 FRKAMTTYFLMLPEQWTPPS 1810 (1832)
Q Consensus 1791 F~~~m~~~f~~vp~~W~~~~ 1810 (1832)
|++||+.|+..+|+.|++.+
T Consensus 588 f~~~~e~yi~~~p~~~~~~~ 607 (612)
T COG5253 588 FRKAMEAYIDPFPDKKTQEG 607 (612)
T ss_pred HHHhHHHhhhcccchhhhcc
Confidence 99999999999999999865
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=6.8e-67 Score=615.10 Aligned_cols=256 Identities=48% Similarity=0.827 Sum_probs=237.3
Q ss_pred cceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccC-CCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHH
Q 000226 1534 GKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWGAQ-GGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYF 1612 (1832)
Q Consensus 1534 ~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~~~-gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~~p~Yf 1612 (1832)
....|+|++|+|.+|++||++||+++++|+.||++|..|..+ ||||||+||+|.|+|||||||++.|++.|+++||+||
T Consensus 53 ~~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~ 132 (313)
T cd00139 53 LSADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYY 132 (313)
T ss_pred CCccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999989875 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CceeeeeeeEEEEeeeccCCCceEEEEEeeeecccCC-CccceeeeCCCCcccccccCC--CCCcccc
Q 000226 1613 KYLSESISTGS-PTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFR-RNITRLYDLKGSSRSRYNADT--SGSNKVL 1688 (1832)
Q Consensus 1613 ~y~~~~~~~~~-~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl 1688 (1832)
+||.+| + +|||+||||+|+|++++ +...++|||||+|||++ ..|+++||||||+++|.+... .....||
T Consensus 133 ~~~~~n----~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vl 205 (313)
T cd00139 133 EYITQN----PQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVL 205 (313)
T ss_pred HHHHhC----CCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCcccc
Confidence 999985 5 79999999999999864 23457899999999998 799999999999999998763 3467899
Q ss_pred cchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeecccceeeeehhhhhhccchhhHHHHhhhhh
Q 000226 1689 LDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKHELVLGIIDFMRQYTWDKHLETWVKTS 1768 (1832)
Q Consensus 1689 ~D~n~~~~~~~~~i~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~~l~~GIID~L~~yt~~KklE~~~K~~ 1768 (1832)
||.||++.. +.+|+|+++.|+.|++||++||.||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|+.
T Consensus 206 KD~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~ 284 (313)
T cd00139 206 KDLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSL 284 (313)
T ss_pred chhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHh
Confidence 999999976 6799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCcccChHHHHHHHHHHHHHhcc
Q 000226 1769 GILGGPKNTSPTVISPQQYKKRFRKAMTTYFL 1800 (1832)
Q Consensus 1769 ~~l~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1800 (1832)
+..+ +..||||+|++|++||++||++||+
T Consensus 285 ~~~~---~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 285 GHDG---GKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred ccCC---CCCcceECHHHHHHHHHHHHHHhcC
Confidence 5322 2679999999999999999999995
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=2.2e-65 Score=609.75 Aligned_cols=263 Identities=41% Similarity=0.693 Sum_probs=238.4
Q ss_pred ceeEEEecCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccc-CccCCCCcceeEEEecCCcEEEeccCHH
Q 000226 1521 LHARISFTDDGLLGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKK-WGAQGGKSNVFFAKTLDDRFIIKQVPKT 1599 (1832)
Q Consensus 1521 ~h~~~~f~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~-~~~~gGKSgs~F~~T~D~rfiiKtis~~ 1599 (1832)
.|.++++... ..+|+|++|+|++|++||++||+++++|++||++|.. |.++||||||+||+|.|+|||||||++.
T Consensus 17 ~~~~~~~~~~----~~~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti~~~ 92 (342)
T smart00330 17 GHLELTPSHG----SADFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTVSKS 92 (342)
T ss_pred CcccccCCCC----CccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEecCHH
Confidence 3455666553 4689999999999999999999999999999999986 9999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEeeeecccC-CCccceeeeCCCCcccccc
Q 000226 1600 ELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLF-RRNITRLYDLKGSSRSRYN 1678 (1832)
Q Consensus 1600 E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~-~~~i~~~yDLKGS~~~R~~ 1678 (1832)
|++.|+++||.||.||.+| ++|||+||||+|+|.++ +++..++|||||+|||+ +..|+++||||||+++|.+
T Consensus 93 E~~~l~~~lp~Y~~~~~~n----~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~R~~ 165 (342)
T smart00330 93 EIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRGREA 165 (342)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCCCCc
Confidence 9999999999999999874 78999999999999875 34456799999999999 5799999999999999998
Q ss_pred cC-CCCCcccccchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeecccc---------------
Q 000226 1679 AD-TSGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEKH--------------- 1742 (1832)
Q Consensus 1679 ~~-~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~~--------------- 1742 (1832)
.. ......||||.||++. .+.+|+|+++.|+.|++||++||.||+++||||||||||||..+.
T Consensus 166 ~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~ 244 (342)
T smart00330 166 DKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVYGSD 244 (342)
T ss_pred CccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhccccccccccc
Confidence 65 2346789999999987 568999999999999999999999999999999999999986432
Q ss_pred ---------------------------------------------eeeeehhhhhhccchhhHHHHhhhhhcccCCCCCC
Q 000226 1743 ---------------------------------------------ELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNT 1777 (1832)
Q Consensus 1743 ---------------------------------------------~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~ 1777 (1832)
+||||||||||+|||+||+|+|+|+.+. + +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~-~---~~ 320 (342)
T smart00330 245 ESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGH-D---GK 320 (342)
T ss_pred ccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhcc-C---CC
Confidence 7999999999999999999999999843 2 36
Q ss_pred CCcccChHHHHHHHHHHHHHhc
Q 000226 1778 SPTVISPQQYKKRFRKAMTTYF 1799 (1832)
Q Consensus 1778 ~~Tvv~P~~Y~~RF~~~m~~~f 1799 (1832)
.||||+|++|++||++||++||
T Consensus 321 ~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 321 TISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred CcceECHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-58 Score=536.25 Aligned_cols=252 Identities=33% Similarity=0.562 Sum_probs=226.4
Q ss_pred ceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCc--cCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHH
Q 000226 1535 KVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKWG--AQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYF 1612 (1832)
Q Consensus 1535 ~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~~--~~gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~~p~Yf 1612 (1832)
...|++|+|||.+|+.||++|||+++||+.||++..... +++|||||+||.|.|+|||||||.++|++.++++||.||
T Consensus 95 ~~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy 174 (420)
T KOG0229|consen 95 SSDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYY 174 (420)
T ss_pred ccccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999876655 677999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEeeeecccCCC-ccceeeeCCCCcccccccCCC--CCccccc
Q 000226 1613 KYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFRR-NITRLYDLKGSSRSRYNADTS--GSNKVLL 1689 (1832)
Q Consensus 1613 ~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~ 1689 (1832)
+|+.++ ++.|||+||||+|+|+.. +|+ ++|||||+|||..+ .||++||||||+++|.+.+.+ +...+||
T Consensus 175 ~~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlK 246 (420)
T KOG0229|consen 175 QHVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLK 246 (420)
T ss_pred HHHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccc
Confidence 999874 556999999999999874 454 58999999999985 999999999999999986532 4678999
Q ss_pred chhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeecc-----------------------------
Q 000226 1690 DQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEE----------------------------- 1740 (1832)
Q Consensus 1690 D~n~~~~~~~~~i~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~----------------------------- 1740 (1832)
|.||++ ....|+|++..|+.|++||++||.||++.+|||||||||||..
T Consensus 247 DlDf~~--~~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (420)
T KOG0229|consen 247 DLDFLN--EGQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPE 324 (420)
T ss_pred cchhhc--cCceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccc
Confidence 999998 3568999999999999999999999999999999999999731
Q ss_pred ----------------------------------------cceeeeehhhhhhccchhhHHHHhhhhhcccCCCCCCCCc
Q 000226 1741 ----------------------------------------KHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPT 1780 (1832)
Q Consensus 1741 ----------------------------------------~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~~~T 1780 (1832)
+..||+||||+||.|++.||+||.+|+. ..+ ...+|
T Consensus 325 ~~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~d--~~tIS 400 (420)
T KOG0229|consen 325 DVLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QHD--PDTIS 400 (420)
T ss_pred ccCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--ccC--Cceee
Confidence 1138999999999999999999999997 433 36799
Q ss_pred ccChHHHHHHHHHHHHHhcc
Q 000226 1781 VISPQQYKKRFRKAMTTYFL 1800 (1832)
Q Consensus 1781 vv~P~~Y~~RF~~~m~~~f~ 1800 (1832)
+|+|++|++||++||.+.|.
T Consensus 401 ~v~P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 401 AVDPKFYAKRFLDFISNIFF 420 (420)
T ss_pred ccCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999873
No 6
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=6.1e-55 Score=554.03 Aligned_cols=260 Identities=28% Similarity=0.430 Sum_probs=226.8
Q ss_pred eEEEecCCCC-----CcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccC--ccCCCCcceeEEEecCCcEEEec
Q 000226 1523 ARISFTDDGL-----LGKVKYTVTCYFAKRFDALRRMCCHSELDFIRSLSRCKKW--GAQGGKSNVFFAKTLDDRFIIKQ 1595 (1832)
Q Consensus 1523 ~~~~f~~~~~-----~~~~~~~~~~y~p~~F~~LR~~~~~~~~~f~~Sl~~~~~~--~~~gGKSgs~F~~T~D~rfiiKt 1595 (1832)
+++.|+.++. .....|+|++|+|.+|+.||++|||++++|+.||+.+..+ .+++|||||+||+|.|+||||||
T Consensus 384 ~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiIKT 463 (765)
T PLN03185 384 FWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKT 463 (765)
T ss_pred EEEEcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEEEe
Confidence 4556776552 1235799999999999999999999999999999866544 57899999999999999999999
Q ss_pred cCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEeeeecccCC-CccceeeeCCCCcc
Q 000226 1596 VPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLLFR-RNITRLYDLKGSSR 1674 (1832)
Q Consensus 1596 is~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~ 1674 (1832)
|++.|++.|++|||+||+||..+ ++|||+||||||+|+.. +| .+++||||+|||++ ..|+++||||||++
T Consensus 464 I~k~E~~~l~~iLp~Y~~hv~~n----~~TLL~kf~Gl~~i~~~---~g--~k~~fvVM~NlF~~~~~I~~~yDLKGSt~ 534 (765)
T PLN03185 464 LRKSEVKVLLRMLPDYHHHVKTY----ENTLITKFFGLHRIKPS---SG--QKFRFVVMGNMFCTELRIHRRFDLKGSSL 534 (765)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhC----CCcchhhheEEEEEEeC---CC--cEEEEEEEecCCCCCCccceEEECCCCCC
Confidence 99999999999999999999864 78999999999999753 34 36899999999997 59999999999999
Q ss_pred cccccCC-CCCcccccchhhhhhCCCCCeeeChHHHHHHHHHHHhhHHHHhhcCccccceeEeeeccc------------
Q 000226 1675 SRYNADT-SGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWNDTAFLASIDVMDYSLLVGIDEEK------------ 1741 (1832)
Q Consensus 1675 ~R~~~~~-~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~L~~~l~~Dt~FL~~~nvMDYSLLvGi~~~~------------ 1741 (1832)
+|.+... ...+.||||.||. .+|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 535 ~R~~~k~~~~~~~tlKDlD~~-----~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~~~ 609 (765)
T PLN03185 535 GRSADKVEIDENTTLKDLDLN-----YSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPYSR 609 (765)
T ss_pred CCCCccccccCCCeeeecCcC-----ceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhcccccccc
Confidence 9987542 2356899999994 379999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000226 1742 -------------------------------------------------------------------------------- 1741 (1832)
Q Consensus 1742 -------------------------------------------------------------------------------- 1741 (1832)
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~mpa 689 (765)
T PLN03185 610 SITADGLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPA 689 (765)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccCch
Confidence
Q ss_pred ---------------------ceeeeehhhhhhccchhhHHHHhhhhhcccCCCCCCCCcccChHHHHHHHHHHHHHhcc
Q 000226 1742 ---------------------HELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPTVISPQQYKKRFRKAMTTYFL 1800 (1832)
Q Consensus 1742 ---------------------~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~~~~~Tvv~P~~Y~~RF~~~m~~~f~ 1800 (1832)
-.||+|||||||.|+..|||||.+|++. . +...||+|+|+.|++||++||.+.|+
T Consensus 690 ra~~~~~~~~~~~~~~~e~~d~~~~~giidilq~y~~~k~~eh~~k~~~--~--~~~~is~v~p~~y~~rf~~f~~~~f~ 765 (765)
T PLN03185 690 RAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKIEHAYKSLQ--F--DSLSISAVDPTFYSKRFLEFIQKVFP 765 (765)
T ss_pred hhhcccccccccccccCcccceEEEEEEEEeecccchhHHHHHHHhhhc--c--CCCceeccChHHHHHHHHHHHHhhcC
Confidence 0278999999999999999999999973 2 34689999999999999999999984
No 7
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=2.7e-55 Score=507.14 Aligned_cols=222 Identities=37% Similarity=0.631 Sum_probs=155.4
Q ss_pred hhccc--ccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHhHHHHHHHHhhcCCCCCceeeeeeeEEEEeeeccC
Q 000226 1565 SLSRC--KKWGAQGGKSNVFFAKTLDDRFIIKQVPKTELESFIKFGPAYFKYLSESISTGSPTCLAKILGIYQVASKHFK 1642 (1832)
Q Consensus 1565 Sl~~~--~~~~~~gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~ 1642 (1832)
||+.+ ..|..++|||||+||+|.|+|||||||+++|++.|+++||+||+||.++ +.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~----~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSEN----PNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHT----TTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhC----cCchHHHHHHHheeccc---
Confidence 66543 5788999999999999999999999999999999999999999999986 55999999999999543
Q ss_pred CCceEEEEEeeeecccCC-CccceeeeCCCCcccccccCC--CCCcccccchhhhhhCCCCCeeeChHHHHHHHHHHHhh
Q 000226 1643 GGKESKMDLLVMENLLFR-RNITRLYDLKGSSRSRYNADT--SGSNKVLLDQNLIEAMPTSPIFVGSKAKRLLERAVWND 1719 (1832)
Q Consensus 1643 ~g~~~k~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~L~~~l~~D 1719 (1832)
+| ..+++||||+|||++ ..|+++||||||+++|.+... .....||||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 467899999999998 799999999999999998652 2357899999999874 69999999999999999999
Q ss_pred HHHHhhcCccccceeEeee------------------------cccceeeeehhhhhhccchhhHHHHhhhhhcccCCCC
Q 000226 1720 TAFLASIDVMDYSLLVGID------------------------EEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPK 1775 (1832)
Q Consensus 1720 t~FL~~~nvMDYSLLvGi~------------------------~~~~~l~~GIID~L~~yt~~KklE~~~K~~~~l~g~~ 1775 (1832)
|.||+++|||||||||||+ ..+..|++|||||||+|||.|++|+++|+.+..+
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~--- 228 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCD--- 228 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT-------------------
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcC---
Confidence 9999999999999999999 4567899999999999999999999999984332
Q ss_pred CCCCcccChHHHHHHHHHHHHHhc
Q 000226 1776 NTSPTVISPQQYKKRFRKAMTTYF 1799 (1832)
Q Consensus 1776 ~~~~Tvv~P~~Y~~RF~~~m~~~f 1799 (1832)
+..+|+|+|++|++||++||++||
T Consensus 229 ~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 229 GQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --SSS---HHHHHHHHHHHHHHH-
T ss_pred CCCCcccCHHHHHHHHHHHHHHhC
Confidence 367999999999999999999998
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-48 Score=490.56 Aligned_cols=308 Identities=28% Similarity=0.431 Sum_probs=286.7
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-C--------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-D-------------- 405 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~-------------- 405 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+...+..+++++++... +
T Consensus 81 ~q~~~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~s 157 (525)
T TIGR02344 81 TQDEEVGDGTT---SVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGT 157 (525)
T ss_pred hhhhhccCCcc---hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhcc
Confidence 56889999999 99999999999999999999999999999999999999999888766431 1
Q ss_pred --chhhHHHHHHHHHHHHHhcCCCCC-CCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000226 406 --RESWLEIITSLSWEAATLLKPDMS-KCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 482 (1832)
Q Consensus 406 --~~~w~~~l~~L~~eA~~~V~~d~~-~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl 482 (1832)
...|.+.|+.|+++|+..|+++.. ....+|++.||+|++++||++.||++++|++|+|++.|++|+++++||||||+
T Consensus 158 k~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (525)
T TIGR02344 158 KFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLL 237 (525)
T ss_pred ccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEE
Confidence 137999999999999999987642 23478998899999999999999999999999999999999999999999999
Q ss_pred ccccccccccc-------ChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHH
Q 000226 483 GGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 555 (1832)
Q Consensus 483 ~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~Le 555 (1832)
+++|++.+.+. ...++++++++|++||+.++++|.+.+|+|||++++|++.|+++|.++||.+++++++.+|+
T Consensus 238 ~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Le 317 (525)
T TIGR02344 238 DCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNN 317 (525)
T ss_pred ecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHH
Confidence 99999998654 35889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEccccCCCCCCCCce-eeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHH
Q 000226 556 RIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 634 (1832)
Q Consensus 556 rIAr~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 634 (1832)
|||++|||+++++++++++..||+ |+.|+++++++ ++|++|+||+.+.+|||+|||+|..+|+|+|
T Consensus 318 rIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~e 384 (525)
T TIGR02344 318 RIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIE 384 (525)
T ss_pred HHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHH
Confidence 999999999999999999999999 99999999765 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 635 HVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 635 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+++||+++++++++++.|||||||++..+
T Consensus 385 r~l~DAl~~vk~~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 385 RNLQDAMAVARNVLLEPKLLPGGGATEMAV 414 (525)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence 999999999999999999999999999753
No 9
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-48 Score=446.88 Aligned_cols=309 Identities=25% Similarity=0.411 Sum_probs=289.2
Q ss_pred ccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc--------
Q 000226 336 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR-------- 406 (1832)
Q Consensus 336 ~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~-------- 406 (1832)
+.+.. -||+|+||||| |+++||+|+|..+..++++++||+.+++.|.+||...+..+.+++++.+.+.
T Consensus 78 miel~rtqdeevgdgtt---svi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi 154 (527)
T KOG0364|consen 78 MIELSRTQDEEVGDGTT---SVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVI 154 (527)
T ss_pred HhhhhhcccccccCCce---eeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhh
Confidence 34455 45789999999 9999999999999999999999999999999999999999988776633221
Q ss_pred ---------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCC
Q 000226 407 ---------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKP 477 (1832)
Q Consensus 407 ---------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~np 477 (1832)
..|.+.++.|+.+|+..|+.+ .|..+|+..|+||.||+||.+.+|++++|+.++|.+.|++|.+.|+||
T Consensus 155 ~~~v~tk~~~~~~~~~~~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~Ienp 232 (527)
T KOG0364|consen 155 NSSVGTKFNSRWSDLICNLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENP 232 (527)
T ss_pred hhhhhhhhhhhhcchhhhHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcC
Confidence 499999999999999999976 566899999999999999999999999999999999999999999999
Q ss_pred eEEEecccccccccccC-------hhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC
Q 000226 478 RFLILGGALEYQRVANH-------LSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 550 (1832)
Q Consensus 478 rILLl~~~Ley~r~~~~-------~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk 550 (1832)
||.|+++||||.+.+++ -.++..+++-|+||++.+.+.|+..+|+||+++|+|++.|++||.++||+++++++
T Consensus 233 rivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~r 312 (527)
T KOG0364|consen 233 RIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLR 312 (527)
T ss_pred cEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhh
Confidence 99999999999987653 46789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccCCCCCCCCce-eeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHH
Q 000226 551 RPLLERIARCTGAQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDN 629 (1832)
Q Consensus 551 ~~~LerIAr~TGA~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~ 629 (1832)
+.+..||||++||.|+.+.++|.+...|+ |+.|++++++++ .|.||..|..|++|||+|||++.++
T Consensus 313 KtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gde-------------yf~f~~~Ck~pkaCtillrg~skdi 379 (527)
T KOG0364|consen 313 KTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDE-------------YFTFFTDCKEPKACTILLRGPSKDI 379 (527)
T ss_pred ccccchhhhhcCceeccChhhCchhccCcccceeeeeccCch-------------hhhhhhhcCCCcceEEEeccCchhH
Confidence 99999999999999999999999999995 999999999874 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCC
Q 000226 630 LKKAKHVVQYGVFAAYHLALETSFLADEGASLP 662 (1832)
Q Consensus 630 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~ 662 (1832)
|+|++|.++||+.+++|.+.+++++|||||+++
T Consensus 380 l~e~ernlqda~~varn~ii~PklvPGGGAtEM 412 (527)
T KOG0364|consen 380 LNEVERNLQDAMGVARNVIINPKLVPGGGATEM 412 (527)
T ss_pred HHHHHHHhhhHHHHHHHhccCCcccCCccHHHH
Confidence 999999999999999999999999999999996
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.4e-46 Score=473.65 Aligned_cols=307 Identities=24% Similarity=0.350 Sum_probs=284.0
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-Cc-------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~~------------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~qd~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~s 157 (519)
T TIGR02339 81 TQDAEVGDGTT---TAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTG 157 (519)
T ss_pred HHHHHhCCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhcc
Confidence 56889999999 99999999999999999999999999999999999999999888776432 11
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEE
Q 000226 407 ----ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 481 (1832)
Q Consensus 407 ----~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILL 481 (1832)
..|.+.|++|+++|+..|++....+ -.+|+ ++|+|+|++||++.||++++|++|++++.|++|+++++||||||
T Consensus 158 k~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIll 236 (519)
T TIGR02339 158 KASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIAL 236 (519)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEE
Confidence 2577999999999999998532122 25888 89999999999999999999999999999999999999999999
Q ss_pred ecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 482 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 482 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++++|||++.+ +...++.+++++|++|++++|++|++.|++|||++++|++.|+++|.++||.+++++++.+|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999875 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHH
Q 000226 555 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 634 (1832)
Q Consensus 555 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 634 (1832)
+|||++|||+++++++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||+|..+|+|+|
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~ 383 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELE 383 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHH
Confidence 999999999999999999999999999999999865 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 635 HVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 635 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+++||++++++++.+++|||||||++..+
T Consensus 384 r~i~DAl~~~~~~~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 384 RSIQDALHVVASALEDGKVVAGGGAVEIEL 413 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEeeCCCHHHHHH
Confidence 999999999999999999999999999753
No 11
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-45 Score=467.61 Aligned_cols=306 Identities=23% Similarity=0.350 Sum_probs=284.1
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCC-CCc-------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE-NDR------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~-~~~------------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 80 ~q~~~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~s 156 (517)
T cd03343 80 TQDEEVGDGTT---TAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTG 156 (517)
T ss_pred HHHHHhCCChh---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcc
Confidence 56889999999 9999999999999999999999999999999999999999988877643 121
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEec
Q 000226 407 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILG 483 (1832)
Q Consensus 407 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~ 483 (1832)
..|.+.|+.|+++|+..++++......+|+ ++|+|+|++||+++||++++|++|++++.|+.|++.++||||||++
T Consensus 157 k~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~ 235 (517)
T cd03343 157 KGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLD 235 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEe
Confidence 257899999999999999764222236888 8999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHH
Q 000226 484 GALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLER 556 (1832)
Q Consensus 484 ~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~Ler 556 (1832)
++|||.+.+ +...++++++++|++|+++++++|++.|++|||++++|++.|+++|.++||.+++++++.+|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 999999875 3567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHH
Q 000226 557 IARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHV 636 (1832)
Q Consensus 557 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~ 636 (1832)
||++|||++++++++++...||+|+.|++++++. ++|++|+||..+.+|||+|||+|..+++|+||+
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~ 382 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERA 382 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999999999999999865 579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 637 VQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 637 l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
++||++++++++.+++||||||++|..
T Consensus 383 l~Dal~~~~~~~~~~~vvpGGG~~e~~ 409 (517)
T cd03343 383 LEDALRVVADALEDGKVVAGGGAVEIE 409 (517)
T ss_pred HHHHHHHHHHHHhCCCeeeCCCHHHHH
Confidence 999999999999999999999999975
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-45 Score=466.19 Aligned_cols=307 Identities=18% Similarity=0.261 Sum_probs=282.9
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC---Cc-----------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---DR----------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~---~~----------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +.
T Consensus 88 ~q~~~~GDGTt---t~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl 164 (526)
T cd03339 88 SQDDEIGDGTT---GVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSL 164 (526)
T ss_pred hhhhhhcCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhh
Confidence 56889999999 99999999999999999999999999999999999999999888776431 21
Q ss_pred -----hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEE
Q 000226 407 -----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 481 (1832)
Q Consensus 407 -----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILL 481 (1832)
..|.+.|+.|+++|+..+... ++..+|+ ++|+|+|++||++.||++++|++|++++.|+.|++.++||||+|
T Consensus 165 ~sk~~~~~~~~~s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~l 241 (526)
T cd03339 165 GSKIVSRCHRQFAEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAI 241 (526)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEE
Confidence 367899999999999998642 2335677 88999999999999999999999999999999999999999999
Q ss_pred ecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 482 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 482 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++++||+.+.+ +.+.+++.++++|++|++.++++|.+.|++|||++++|++.|+++|.++||.+++++++.+|
T Consensus 242 l~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~L 321 (526)
T cd03339 242 LTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEI 321 (526)
T ss_pred EEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHH
Confidence 99999998764 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHH
Q 000226 555 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 634 (1832)
Q Consensus 555 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 634 (1832)
+|||++|||++++++++++...||+|+.|+++.|+.+ .++++||+||+.+.+|||+|||+|+.+|+|+|
T Consensus 322 erIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~e 390 (526)
T cd03339 322 ELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAK 390 (526)
T ss_pred HHHHHHhCCEEecchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999987641 26899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 635 HVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 635 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+++||++++++++.++++||||||++..+
T Consensus 391 r~l~DAl~~~~~~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 391 RSLHDALCVVRNLIRDNRIVYGGGAAEISC 420 (526)
T ss_pred HHHHHHHHHHHHHhhCCCEEeCCCHHHHHH
Confidence 999999999999999999999999999753
No 13
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-44 Score=457.17 Aligned_cols=306 Identities=18% Similarity=0.225 Sum_probs=278.1
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhC-cCCCCCC-Cc------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDEN-DR------------ 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~-i~~~~~~-~~------------ 406 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++ ++++... +.
T Consensus 73 ~q~~~~GDGTT---t~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~ 149 (527)
T cd03335 73 LQDKEVGDGTT---SVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMS 149 (527)
T ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhc
Confidence 56889999999 9999999999999999999999999999999999999999985 6665421 21
Q ss_pred ----hhhHHHHHHHHHHHHHhcCC-CCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEE
Q 000226 407 ----ESWLEIITSLSWEAATLLKP-DMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 481 (1832)
Q Consensus 407 ----~~w~~~l~~L~~eA~~~V~~-d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILL 481 (1832)
..+.+.|+.|+++|+..|+. +......+|+ ++|+|+++.||++.||++++|++|++++++++|+++++||||||
T Consensus 150 sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIll 228 (527)
T cd03335 150 SKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIAC 228 (527)
T ss_pred ccccchhHHHHHHHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEE
Confidence 14679999999999999963 2112224788 78999999999999999999999999999999999999999999
Q ss_pred ecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 482 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 482 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++++|++.+.+ ++..+++.+.++|+++++.++++|++.|++|||++++|++.|++||.++||.+++++++.+|
T Consensus 229 l~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~l 308 (527)
T cd03335 229 LDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDL 308 (527)
T ss_pred EeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHH
Confidence 99999998754 35688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccCCCC------CCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHH
Q 000226 555 ERIARCTGAQIVPSIDHLT------SQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGD 628 (1832)
Q Consensus 555 erIAr~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~ 628 (1832)
+|||++|||+++++++.++ +..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.
T Consensus 309 erIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~ 375 (527)
T cd03335 309 RRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDF 375 (527)
T ss_pred HHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHH
Confidence 9999999999999986653 34899999999999865 5899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 629 NLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 629 ~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
+|+|+||+++||++++++++.++++||||||++.+
T Consensus 376 ~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ 410 (527)
T cd03335 376 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETA 410 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHH
Confidence 99999999999999999999999999999999975
No 14
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6e-44 Score=454.40 Aligned_cols=305 Identities=21% Similarity=0.296 Sum_probs=280.4
Q ss_pred ccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCC----c----
Q 000226 336 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND----R---- 406 (1832)
Q Consensus 336 ~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~----~---- 406 (1832)
+.+.. .+|+++||||| |+|+||++|++++.+++++|+||..|++||.+|+..++..+++++++...+ .
T Consensus 86 l~~~a~~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~ 162 (533)
T PTZ00212 86 LVDISKTQDEEVGDGTT---SVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLL 162 (533)
T ss_pred HHHHHHhhhhhhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHH
Confidence 33434 56889999999 999999999999999999999999999999999999999999888764321 1
Q ss_pred ------------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceee
Q 000226 407 ------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKI 474 (1832)
Q Consensus 407 ------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i 474 (1832)
..|.+.|+.|+++|+..+.+ .+|+ +.|+|++++||++.||++++|+|+++++.+ .|++++
T Consensus 163 ~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i 234 (533)
T PTZ00212 163 NIARTTLSSKLLTVEKDHFAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRL 234 (533)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccc
Confidence 25889999999999999864 3566 789999999999999999999999999887 589999
Q ss_pred cCCeEEEecccccccccc--------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEE
Q 000226 475 DKPRFLILGGALEYQRVA--------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLV 546 (1832)
Q Consensus 475 ~nprILLl~~~Ley~r~~--------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v 546 (1832)
+||||||++++|||.+.+ +.+.++..+.++|++++++++.+|++.+++||+++++|++.|+++|.++||.++
T Consensus 235 ~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~av 314 (533)
T PTZ00212 235 ENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAI 314 (533)
T ss_pred cCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEE
Confidence 999999999999999875 457778889999999999999999999999999999999999999999999999
Q ss_pred eecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCC
Q 000226 547 LNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGAN 626 (1832)
Q Consensus 547 ~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s 626 (1832)
+++++.+|+|||++|||+++++++.+++.+||+|+.|+++.++. ++|++|+||..+.+|||+|||+|
T Consensus 315 r~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t 381 (533)
T PTZ00212 315 EHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGAS 381 (533)
T ss_pred ecCCHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCC
Confidence 99999999999999999999999999999999999999887654 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 627 GDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 627 ~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
+.+|+|+||+++||++++++++.+++|||||||++..+
T Consensus 382 ~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 382 THILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 99999999999999999999999999999999999753
No 15
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.8e-44 Score=452.94 Aligned_cols=307 Identities=17% Similarity=0.259 Sum_probs=282.2
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC---Cc-----------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---DR----------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~---~~----------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||..|+...+..+++++++... +.
T Consensus 92 ~qd~~~GDGTt---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l 168 (532)
T TIGR02343 92 SQDDEIGDGTT---GVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSL 168 (532)
T ss_pred HHHHHhcCCcc---cHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhh
Confidence 56889999999 99999999999999999999999999999999999999999888775321 11
Q ss_pred -----hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEE
Q 000226 407 -----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 481 (1832)
Q Consensus 407 -----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILL 481 (1832)
..|.+.|+.|+++|+..|... ....+|+ ++|+|+|++||++.||++++|++|++++.|+.|++.++||||+|
T Consensus 169 ~sK~~~~~~~~ls~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l 245 (532)
T TIGR02343 169 GSKIVSKCHRRFAEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAI 245 (532)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEE
Confidence 257889999999999998642 2336888 89999999999999999999999999999999999999999999
Q ss_pred ecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 482 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 482 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++++||+.+.+ +...+++.++++|+++++.++++|++.|++|||++++|++.|+++|.++||.++++++..+|
T Consensus 246 ~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l 325 (532)
T TIGR02343 246 LTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHEL 325 (532)
T ss_pred EEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHH
Confidence 99999999864 24567788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHH
Q 000226 555 ERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAK 634 (1832)
Q Consensus 555 erIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evK 634 (1832)
+|||++|||++++++++++...||+|+.|+++.++.+ .+++++|+||+.+..|||+|||+|+.+|+|+|
T Consensus 326 ~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~e 394 (532)
T TIGR02343 326 ELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAK 394 (532)
T ss_pred HHHHHHhCCEEecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999998652 14799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 635 HVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 635 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+++||++++++++.++++||||||++.++
T Consensus 395 r~l~DAl~~v~~~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 395 RSIHDALCVVRNLIKNSRIVYGGGAAEISC 424 (532)
T ss_pred HHHHHHHHHHHHHHhCCCEEeCcCHHHHHH
Confidence 999999999999999999999999999753
No 16
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.4e-44 Score=452.58 Aligned_cols=301 Identities=22% Similarity=0.332 Sum_probs=278.0
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCC-----c---------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND-----R--------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~-----~--------- 406 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++...+ .
T Consensus 81 ~q~~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t 157 (522)
T cd03340 81 SQDAEVGDGTT---SVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAAT 157 (522)
T ss_pred HhHhHhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHH
Confidence 56889999999 999999999999999999999999999999999999999998887764321 1
Q ss_pred -------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC---CceeecC
Q 000226 407 -------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR---MTSKIDK 476 (1832)
Q Consensus 407 -------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~---M~~~i~n 476 (1832)
..+.+.|++|+++|+..+++ ..|+ ++|+|+++.||++.||++++|++|+++++++. |+++++|
T Consensus 158 ~l~sK~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n 230 (522)
T cd03340 158 ALNSKLIASEKEFFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKN 230 (522)
T ss_pred HhccCcchhHHHHHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccC
Confidence 24789999999999999975 3466 88999999999999999999999999999764 6999999
Q ss_pred CeEEEecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeec
Q 000226 477 PRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI 549 (1832)
Q Consensus 477 prILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nV 549 (1832)
|||||++++||+.+.. ..+..++.++++|+++|.+++++|++.|++||+++++|++.|++||.++||.++.+|
T Consensus 231 ~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v 310 (522)
T cd03340 231 PKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRV 310 (522)
T ss_pred CeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeC
Confidence 9999999999998753 346668899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHH
Q 000226 550 KRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDN 629 (1832)
Q Consensus 550 k~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~ 629 (1832)
++.+|+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||++..+
T Consensus 311 ~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~ 377 (522)
T cd03340 311 PEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQF 377 (522)
T ss_pred CHHHHHHHHHHHCCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHH
Confidence 99999999999999999999999999999999999988754 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 630 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 630 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+|+||+++||++++++++.++.||||||+++.++
T Consensus 378 l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 378 IEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 99999999999999999999999999999999753
No 17
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.1e-43 Score=413.38 Aligned_cols=259 Identities=59% Similarity=0.902 Sum_probs=240.8
Q ss_pred HHHHHHHHHhCcCCCCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecc
Q 000226 387 ALVAQLLQVENLPVGDENDRESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVA 466 (1832)
Q Consensus 387 al~~qLl~~~~i~~~~~~~~~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a 466 (1832)
++..|++..+++. +.+.|.+.|+.|+++|+..|.++...++.+|+.++|+|+|++||++.||++++|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 5788999999986 46799999999999999999765334457999778999999999999999999999999999
Q ss_pred cCCCceeecCCeEEEecccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEE
Q 000226 467 HRRMTSKIDKPRFLILGGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLV 546 (1832)
Q Consensus 467 ~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v 546 (1832)
|++||++++||||+|++|+|+|++.++++.+++.++++|++|++++|++|++.||||||++|+|++.|++||.++||+++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v 156 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecChHHHHHHHHHhCCEEccccC-CCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCC
Q 000226 547 LNIKRPLLERIARCTGAQIVPSID-HLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGA 625 (1832)
Q Consensus 547 ~nVk~~~LerIAr~TGA~Iissld-~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~ 625 (1832)
++|++.+|+|||+||||+|+++++ .++++.||+|+.|++++++++. + ..++|+||+||+.+.+|||+|||+
T Consensus 157 ~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~------~--~~~~~~~~~~~~~~~~~TIlLRG~ 228 (261)
T cd03334 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEH------G--RSKTLMFFEGCPKELGCTILLRGG 228 (261)
T ss_pred EecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcC------C--CceeEEEEecCCCCceeEEEEECC
Confidence 999999999999999999999954 8899999999999999987531 1 136899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCC
Q 000226 626 NGDNLKKAKHVVQYGVFAAYHLALETSFLADEG 658 (1832)
Q Consensus 626 s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgG 658 (1832)
|...|+|+||+++||++++||+++|.+++.+.|
T Consensus 229 t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 229 DLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999988754
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-43 Score=448.84 Aligned_cols=304 Identities=21% Similarity=0.288 Sum_probs=279.7
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCC--CCCc------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGD--ENDR------------ 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~--~~~~------------ 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++. ..+.
T Consensus 81 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~ 157 (531)
T TIGR02347 81 AQDDITGDGTT---STVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLR 157 (531)
T ss_pred HhhhhhcCcHH---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhc
Confidence 66889999999 999999999999999999999999999999999999999998887542 2221
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000226 407 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 482 (1832)
Q Consensus 407 ----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl 482 (1832)
..+.+.|+.|+++|+..++++ +..+|+ +.|+|+++.||+..||++++|++|++++.++.|+++++||||||+
T Consensus 158 sK~~~~~~~~ls~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~ 233 (531)
T TIGR02347 158 TKLPIDLADQLTEIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTC 233 (531)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEE
Confidence 267899999999999999863 235787 779999999999999999999999999999999999999999999
Q ss_pred cccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEEecCccHHHHHHHHHcCCeE
Q 000226 483 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHH-------PN---VLLVEKSVSRYAQDYLLAKDISL 545 (1832)
Q Consensus 483 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~-------pn---VVlvek~Vs~~Al~~L~~~gI~~ 545 (1832)
+++|++.+.+ ....++..++.+|++||+.++++|+.++ |+ ||+++++|++.|++||.++||.+
T Consensus 234 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~ 313 (531)
T TIGR02347 234 NVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMA 313 (531)
T ss_pred eCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceE
Confidence 9999998743 3467789999999999999999999876 36 99999999999999999999999
Q ss_pred EeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCC
Q 000226 546 VLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGA 625 (1832)
Q Consensus 546 v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~ 625 (1832)
++++++.+|+|||++|||+++.+++++++..||+|+.|+++.++. ++|++|+||..+..|||+|||+
T Consensus 314 i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~ 380 (531)
T TIGR02347 314 LRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGP 380 (531)
T ss_pred EccCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCC
Confidence 999999999999999999999999999999999999999988765 5799999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 626 NGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 626 s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+.+|+|+||+++||++++++++.++++||||||++.++
T Consensus 381 t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 381 NDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 999999999999999999999999999999999999753
No 19
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-43 Score=449.38 Aligned_cols=306 Identities=20% Similarity=0.262 Sum_probs=281.6
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCC-CCc-------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE-NDR------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~-~~~------------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 73 ~q~~~~GDGTt---t~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~s 149 (515)
T cd03338 73 AQDIEAGDGTT---SVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNS 149 (515)
T ss_pred HHHhHhcCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhcc
Confidence 56889999999 9999999999999999999999999999999999999999988877643 121
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC-CceeecCCeEEEe
Q 000226 407 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-MTSKIDKPRFLIL 482 (1832)
Q Consensus 407 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~-M~~~i~nprILLl 482 (1832)
..|.+.|+.|+++|+..|+++. ..+.+|+ +.|+|.++.||+++||++++|++|++++.|+. ||+.++||||+++
T Consensus 150 K~~~~~~~~ls~li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll 227 (515)
T cd03338 150 KVVSQYSSLLAPIAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLI 227 (515)
T ss_pred ccchhhHHHHHHHHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEE
Confidence 2488999999999999998642 2247898 88999999999999999999999999999986 4999999999999
Q ss_pred cccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCc-----cHHHHHHHHHcCCeEEeecC
Q 000226 483 GGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDISLVLNIK 550 (1832)
Q Consensus 483 ~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~~v~nVk 550 (1832)
+|+|||.+.+ +...+++.++++|+++|+.++++|++.|++|||++++| ++.|+++|.++||.++++++
T Consensus 228 ~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~ 307 (515)
T cd03338 228 QFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIE 307 (515)
T ss_pred eccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCC
Confidence 9999998753 34668999999999999999999999999999999997 99999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCC-CceeEEEecCCCHHH
Q 000226 551 RPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLKGANGDN 629 (1832)
Q Consensus 551 ~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~-~~g~TIlLRG~s~~~ 629 (1832)
+.+|+|||++|||++++++++++...||+|+.|+++++++ +++++|+||+. +.+|||+|||+|+.+
T Consensus 308 ~~~LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~ 374 (515)
T cd03338 308 REEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLV 374 (515)
T ss_pred HHHHHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999999999999754 57999999987 689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 630 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 630 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
++|+||+++||++++++++.++++||||||++.++
T Consensus 375 l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 375 LDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHH
Confidence 99999999999999999999999999999999753
No 20
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-43 Score=446.82 Aligned_cols=300 Identities=19% Similarity=0.233 Sum_probs=278.0
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC---C-c----------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN---D-R---------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~---~-~---------- 406 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++... + .
T Consensus 80 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~ 156 (517)
T cd03336 80 VQDDEVGDGTT---SVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTT 156 (517)
T ss_pred HHHhHhCCChh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhh
Confidence 66889999999 99999999999999999999999999999999999999999888876421 1 1
Q ss_pred ------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEE
Q 000226 407 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 480 (1832)
Q Consensus 407 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprIL 480 (1832)
..|.+.|+.|+++|+..++. .+|+ ++|+|++++||++.||++++|+|++++..+ .|+++++|||||
T Consensus 157 lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIl 228 (517)
T cd03336 157 LSSKILTQDKEHFAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKIL 228 (517)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEE
Confidence 14889999999999999863 4566 789999999999999999999999999876 489999999999
Q ss_pred Eeccccccccccc--------ChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChH
Q 000226 481 ILGGALEYQRVAN--------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 552 (1832)
Q Consensus 481 Ll~~~Ley~r~~~--------~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~ 552 (1832)
|++++|||.+.+. .+.++..+.++|++++++++.+|++.++++|+++++|++.|++||.++||.+++++++.
T Consensus 229 i~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~ 308 (517)
T cd03336 229 IANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFD 308 (517)
T ss_pred EEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHH
Confidence 9999999988753 67888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHH
Q 000226 553 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKK 632 (1832)
Q Consensus 553 ~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~e 632 (1832)
+|+|||++|||+++++++.++..+||+|+.|++..+++ ++|++|+||+.+.+|||+|||+|+.+|+|
T Consensus 309 ~L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E 375 (517)
T cd03336 309 GVERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDE 375 (517)
T ss_pred HHHHHHHHhCCEEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999887654 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 633 AKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 633 vKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
+||+++||++++++++.++++||||||++.++
T Consensus 376 ~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 376 AERSLHDALCVLAQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999753
No 21
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-43 Score=445.88 Aligned_cols=311 Identities=19% Similarity=0.249 Sum_probs=282.9
Q ss_pred ccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-Cc-------
Q 000226 336 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------- 406 (1832)
Q Consensus 336 ~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~~------- 406 (1832)
+.+.. .+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++++... +.
T Consensus 68 l~~~a~~qd~~~GDGTt---t~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va 144 (517)
T TIGR02342 68 LVELSKAQDIEAGDGTT---SVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSA 144 (517)
T ss_pred HHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHH
Confidence 33444 56889999999 99999999999999999999999999999999999999999888776431 11
Q ss_pred ---------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeeccc-CCCceeecC
Q 000226 407 ---------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAH-RRMTSKIDK 476 (1832)
Q Consensus 407 ---------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~-k~M~~~i~n 476 (1832)
..|.+.|+.|+++|+..+.++ ..++.+|+ +.|+|+++.||++.||++++|++|++++.+ +.||+.++|
T Consensus 145 ~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~-~~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n 222 (517)
T TIGR02342 145 TTSLSSKVVSQYSSLLAPLAVDAVLKVIDP-ENDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEK 222 (517)
T ss_pred HHHhccccchhHHHHHHHHHHHHHHHHhcc-ccCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccC
Confidence 378899999999999999863 22347888 889999999999999999999999999999 599999999
Q ss_pred CeEEEecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCc-----cHHHHHHHHHcCCe
Q 000226 477 PRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDIS 544 (1832)
Q Consensus 477 prILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~ 544 (1832)
|||++++++|++.+.+ ..+.+++.++++|+++++.++++|++.|++|||++++| ++.|+++|.++||.
T Consensus 223 ~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~ 302 (517)
T TIGR02342 223 AKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIM 302 (517)
T ss_pred CcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCce
Confidence 9999999999998753 35678899999999999999999999999999999998 99999999999999
Q ss_pred EEeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCC-ceeEEEec
Q 000226 545 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP-LGCTILLK 623 (1832)
Q Consensus 545 ~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~-~g~TIlLR 623 (1832)
+++++++.+|+|||++|||++++++++++..+||+|+.|++.++++ ++|++|++|+.. ..|||+||
T Consensus 303 av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllr 369 (517)
T TIGR02342 303 VVKDIEREEVEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLR 369 (517)
T ss_pred EEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999877643 579999999874 89999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 624 GANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 624 G~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|+|+.+++|+||+++||++++++++.++.+||||||++.++
T Consensus 370 G~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 370 GSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHH
Confidence 99999999999999999999999999999999999999753
No 22
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-43 Score=444.04 Aligned_cols=301 Identities=20% Similarity=0.296 Sum_probs=278.4
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC----C-c---------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN----D-R--------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~----~-~--------- 406 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++... + .
T Consensus 82 ~q~~~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~ts 158 (522)
T TIGR02345 82 SQDSEVGDGTT---SVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATA 158 (522)
T ss_pred HHHHHhCCCch---hHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHH
Confidence 56889999999 99999999999999999999999999999999999999999888776431 1 1
Q ss_pred ------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC---CceeecCC
Q 000226 407 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR---MTSKIDKP 477 (1832)
Q Consensus 407 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~---M~~~i~np 477 (1832)
..+.+.|+.|+++|+..++++ .+|+ ++|+|+++.||++.||++++|++|+++++++. |+++++||
T Consensus 159 l~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~ 232 (522)
T TIGR02345 159 LNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANP 232 (522)
T ss_pred hccccccchHHHHHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccc
Confidence 147889999999999999753 5777 78999999999999999999999999999764 69999999
Q ss_pred eEEEecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC
Q 000226 478 RFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 550 (1832)
Q Consensus 478 rILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk 550 (1832)
||||++++|++.+.+ +.+..++.+++.|++++++++++|++.|++||+|+++|++.+++||.++||.++.+++
T Consensus 233 kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~ 312 (522)
T TIGR02345 233 KILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVS 312 (522)
T ss_pred eEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCC
Confidence 999999999998654 3567788899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHH
Q 000226 551 RPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNL 630 (1832)
Q Consensus 551 ~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L 630 (1832)
..+|+|||++|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|
T Consensus 313 ~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l 379 (522)
T TIGR02345 313 DEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFI 379 (522)
T ss_pred HHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHH
Confidence 9999999999999999999999999999999999888654 689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 631 KKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 631 ~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
+|+||+++||++++++++.++.||||||+++..
T Consensus 380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ 412 (522)
T TIGR02345 380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEME 412 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHH
Confidence 999999999999999999999999999999975
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-42 Score=442.50 Aligned_cols=307 Identities=20% Similarity=0.232 Sum_probs=277.5
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhC-cCCCCC--CCc-----------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDE--NDR----------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~-i~~~~~--~~~----------- 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||..|+...+..+++ ++++.. +..
T Consensus 77 ~qd~~~GDGTT---t~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~ 153 (536)
T TIGR02340 77 LQDREVGDGTT---SVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMS 153 (536)
T ss_pred HHHHHhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhc
Confidence 56889999999 9999999999999999999999999999999999999999976 355532 111
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEE
Q 000226 407 ----ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLI 481 (1832)
Q Consensus 407 ----~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILL 481 (1832)
..+.+.|+.|+++|+..|+.+...+ ..+|+ ++|+|+|+.||++.||++++|++|++++.+++|+++++||||||
T Consensus 154 sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli 232 (536)
T TIGR02340 154 SKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIAC 232 (536)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEE
Confidence 1478999999999999996421122 25788 88999999999999999999999999999999999999999999
Q ss_pred ecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 482 LGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 482 l~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++++|++.+.+ +....++.+.++|++++.+++++|++.+++||+++++|++.|++||.++||.+++++++.+|
T Consensus 233 ~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~L 312 (536)
T TIGR02340 233 LDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDL 312 (536)
T ss_pred EecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999998754 34688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCEEccccCCC------CCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHH
Q 000226 555 ERIARCTGAQIVPSIDHL------TSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGD 628 (1832)
Q Consensus 555 erIAr~TGA~Iissld~L------~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~ 628 (1832)
+|||++|||+++++++.+ +...||+|+.|++++++. ++|++|+||..+.+|||+|||+|+.
T Consensus 313 erIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~ 379 (536)
T TIGR02340 313 KRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDF 379 (536)
T ss_pred HHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHH
Confidence 999999999999998654 345699999999999865 5799999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 629 NLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 629 ~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
+++|+||+++||++++++++.+++|||||||++..+
T Consensus 380 ~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHH
Confidence 999999999999999999999999999999999753
No 24
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-43 Score=439.63 Aligned_cols=274 Identities=27% Similarity=0.431 Sum_probs=253.4
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-Cc-------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~~------------- 406 (1832)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~q~~~~GDGTt---t~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~s 157 (480)
T cd03337 81 TQDEEVGDGTT---SVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGT 157 (480)
T ss_pred hHHHHhCCCcc---hhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhcc
Confidence 56789999999 99999999999999999999999999999999999999999888776431 21
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCCCCCC-CCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000226 407 ---ESWLEIITSLSWEAATLLKPDMSKC-GGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 482 (1832)
Q Consensus 407 ---~~w~~~l~~L~~eA~~~V~~d~~~~-~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl 482 (1832)
+.|.+.|+.|+++|+..++++.... ..+|++.||+|++++||++.||++++|++|+|+++|++|+++++||||||+
T Consensus 158 K~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll 237 (480)
T cd03337 158 KFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLL 237 (480)
T ss_pred CcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEE
Confidence 3699999999999999998764322 368998899999999999999999999999999999999999999999999
Q ss_pred cccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhC
Q 000226 483 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTG 562 (1832)
Q Consensus 483 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TG 562 (1832)
+++||| |||++++|++.|+++|.++||.+++++++.+|+|||++||
T Consensus 238 ~~~Le~----------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tG 283 (480)
T cd03337 238 DCPLEY----------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACG 283 (480)
T ss_pred ecCcce----------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 999998 9999999999999999999999999999999999999999
Q ss_pred CEEccccCCCCCCCCce-eeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHH
Q 000226 563 AQIVPSIDHLTSQKLGY-CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGV 641 (1832)
Q Consensus 563 A~Iissld~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal 641 (1832)
|++++++++++++.||+ |+.|+++++++ +++++|+||+.+.+|||+|||+|..+|+|+||+++||+
T Consensus 284 a~ii~~~~~l~~~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl 350 (480)
T cd03337 284 ATIVNRPEELTESDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAM 350 (480)
T ss_pred CEEecchhhCCHHHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 67777776543 58999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEeCCCccCCCC
Q 000226 642 FAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 642 ~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
+++++++.+++|||||||+|..+
T Consensus 351 ~v~~~~~~~~~~vpGGGa~E~~l 373 (480)
T cd03337 351 AVARNIILNPKLVPGGGATEMAV 373 (480)
T ss_pred HHHHHHhcCCCEEeCCCHHHHHH
Confidence 99999999999999999999753
No 25
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.9e-41 Score=427.13 Aligned_cols=300 Identities=19% Similarity=0.247 Sum_probs=275.0
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC----Cc----------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN----DR---------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~----~~---------- 406 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+...+..+++++++... +.
T Consensus 81 ~qd~~~GDGTT---tvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~ 157 (519)
T TIGR02341 81 VQDDEVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTT 157 (519)
T ss_pred HhHhhhCCchh---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHH
Confidence 66789999999 99999999999999999999999999999999999999999888876432 11
Q ss_pred ------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEE
Q 000226 407 ------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFL 480 (1832)
Q Consensus 407 ------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprIL 480 (1832)
..|.+.|+.|+++|+..+.. ..|+ +.|+|.++.||++.||++++|+|+++.+.+ .|+++++|||||
T Consensus 158 l~ski~~~~~~~~s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Il 229 (519)
T TIGR02341 158 LSSKILSQHKDHFAQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKIL 229 (519)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEE
Confidence 25788999999999999853 1255 569999999999999999999999999876 689999999999
Q ss_pred Eeccccccccccc--------ChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChH
Q 000226 481 ILGGALEYQRVAN--------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRP 552 (1832)
Q Consensus 481 Ll~~~Ley~r~~~--------~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~ 552 (1832)
+++++|++.+.+. ....+..+.+.|+++++.+++.|++.++++|++++.|++.|+++|.++||.++++++..
T Consensus 230 i~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~ 309 (519)
T TIGR02341 230 IANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFE 309 (519)
T ss_pred EEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHH
Confidence 9999999987553 34568888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHH
Q 000226 553 LLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKK 632 (1832)
Q Consensus 553 ~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~e 632 (1832)
+|+|||++|||+++++++.++..+||+|+.|++..++. ++|++|+||+.+..|||+|||+|+.+|+|
T Consensus 310 ~l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E 376 (519)
T TIGR02341 310 GIERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDE 376 (519)
T ss_pred HHHHHHHHhCCEEecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999999877654 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 633 AKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 633 vKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
+||+++||++++++++.++.|||||||++.++
T Consensus 377 ~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 377 SERSLHDALCVLSQTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999999999999999753
No 26
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.5e-41 Score=422.15 Aligned_cols=282 Identities=22% Similarity=0.302 Sum_probs=257.6
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCC--CCc------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDE--NDR------------ 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~--~~~------------ 406 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+.. .+.
T Consensus 77 ~qd~~~GDGTT---t~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~ 153 (484)
T cd03342 77 AQDDITGDGTT---SNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLR 153 (484)
T ss_pred HhhhHhCCChh---hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhC
Confidence 66889999999 9999999999999999999999999999999999999999988876643 121
Q ss_pred ----hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000226 407 ----ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 482 (1832)
Q Consensus 407 ----~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl 482 (1832)
..|.+.|+.|+++|+..++++ ++.+|+ +.|+|+++.||++.||++++|++|++++.++.|+++++||||+|+
T Consensus 154 sk~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~ 229 (484)
T cd03342 154 TKLHADLADQLTEIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTC 229 (484)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEE
Confidence 257899999999999999863 347888 889999999999999999999999999999999999999999999
Q ss_pred cccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhC
Q 000226 483 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTG 562 (1832)
Q Consensus 483 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TG 562 (1832)
+++|++.+.+... .+ ..+|||++++|++.|+++|.++||.+++++++.+|+|||++||
T Consensus 230 ~~~le~~~~~~~~-~~---------------------~~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 230 NVSLEYEKTEVNS-GF---------------------FYSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred eCCCCCCccccCc-EE---------------------EEEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 9999998764321 10 0239999999999999999999999999999999999999999
Q ss_pred CEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHH
Q 000226 563 AQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVF 642 (1832)
Q Consensus 563 A~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~ 642 (1832)
|+++++++++++..||+|+.|+++.++. ++|++|+||+.+..|||+|||+|..+|+|+||+++||++
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~ 354 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLR 354 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 579999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEeCCCccCCCC
Q 000226 643 AAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 643 a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
++++++.++++||||||++.++
T Consensus 355 ~vk~~~~~~~~vpGGGa~e~~l 376 (484)
T cd03342 355 AVKNAIEDKCVVPGAGAFEVAL 376 (484)
T ss_pred HHHHHhcCCcEEeCCCHHHHHH
Confidence 9999999999999999999753
No 27
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-41 Score=383.02 Aligned_cols=307 Identities=20% Similarity=0.309 Sum_probs=281.3
Q ss_pred cccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-Cc------
Q 000226 335 ILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------ 406 (1832)
Q Consensus 335 ~~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~~------ 406 (1832)
.|++.. -||.||||||| |+|+||+|+|+++..+++.|+||..|+.+|++|...++..++++++.... +.
T Consensus 78 tlVdia~sQDaEVGDGTT---SVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~l 154 (543)
T KOG0361|consen 78 TLVDIARSQDAEVGDGTT---SVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELREL 154 (543)
T ss_pred HHHHHHhhccccccCCce---eEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHH
Confidence 566776 45779999999 99999999999999999999999999999999999999999999887442 11
Q ss_pred --------------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccC---C
Q 000226 407 --------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHR---R 469 (1832)
Q Consensus 407 --------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k---~ 469 (1832)
....++|+.++++|+..+.. ..|. +.|-|||++||.++||.+|+||.|+|.+... .
T Consensus 155 L~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq 227 (543)
T KOG0361|consen 155 LEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ 227 (543)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhh
Confidence 26678899999999998863 3444 8899999999999999999999999998765 5
Q ss_pred CceeecCCeEEEecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcC
Q 000226 470 MTSKIDKPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD 542 (1832)
Q Consensus 470 M~~~i~nprILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~g 542 (1832)
.|+++.|||||+|+-.||..-.. .....++.++..|+..|...+++|+..|.||||..-.|.++|.+||.+++
T Consensus 228 qPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrd 307 (543)
T KOG0361|consen 228 QPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRD 307 (543)
T ss_pred CccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccC
Confidence 79999999999999999985321 35788999999999999999999999999999999999999999999999
Q ss_pred CeEEeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEe
Q 000226 543 ISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILL 622 (1832)
Q Consensus 543 I~~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlL 622 (1832)
|-+..+|..++|.|+..++|+.|.++..++.+..||+|+.|+.+.++. .+|-+|+||++...||++|
T Consensus 308 iFCAGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~-------------eRyN~Fegcp~aktcTliL 374 (543)
T KOG0361|consen 308 IFCAGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGG-------------ERYNLFEGCPKAKTCTLIL 374 (543)
T ss_pred ceecCcCCHHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcc-------------hhhhhhcCCCccceeEEEE
Confidence 999999999999999999999999999999999999999999988765 4799999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 623 KGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 623 RG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
||+-++.+.|++|.+|||+++++.+++..++|+||||+++++
T Consensus 375 RGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 375 RGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred eccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999999999999999999999874
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8e-40 Score=416.18 Aligned_cols=309 Identities=17% Similarity=0.238 Sum_probs=276.5
Q ss_pred cccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCC-CCC--CCch---
Q 000226 335 ILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPV-GDE--NDRE--- 407 (1832)
Q Consensus 335 ~~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~-~~~--~~~~--- 407 (1832)
.+.+.. .+|+++||||| |+|+||++|++++++++++|+||..|++||.+|+..++..++++++ +.. .+..
T Consensus 76 ll~e~a~sqd~~~GDGTT---t~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~ 152 (531)
T TIGR02346 76 LLVMASEMQENEIGDGTN---LVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELI 152 (531)
T ss_pred HHHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHH
Confidence 344444 56889999999 9999999999999999999999999999999999999999988875 321 1210
Q ss_pred ------------hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeec
Q 000226 408 ------------SWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKID 475 (1832)
Q Consensus 408 ------------~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~ 475 (1832)
+..+.|+.|+++|+..++++ ..+.+|+ +.|+|+++.||+.+||++++|++|+++.. .|++.++
T Consensus 153 ~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~--~~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~ 227 (531)
T TIGR02346 153 KALKASISSKQYGNEDFLAQLVAKACSTVMPK--NPENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVK 227 (531)
T ss_pred HHHHHHhccccCchHHHHHHHHHHHHHHHhhc--CCCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceecc
Confidence 23788999999999999864 2236888 78999999999999999999999999954 5899999
Q ss_pred CCeEEEecccccccccc-------cChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEee
Q 000226 476 KPRFLILGGALEYQRVA-------NHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLN 548 (1832)
Q Consensus 476 nprILLl~~~Ley~r~~-------~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~n 548 (1832)
||||+|+++||++.+.+ +....+..+.+.|+++++.++++|++.|++|||++++|++.|+++|.++||.++++
T Consensus 228 n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~ 307 (531)
T TIGR02346 228 NAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKI 307 (531)
T ss_pred CCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEec
Confidence 99999999999998765 23556778889999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCC-CCceeEEEecCCCH
Q 000226 549 IKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCP-KPLGCTILLKGANG 627 (1832)
Q Consensus 549 Vk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~-~~~g~TIlLRG~s~ 627 (1832)
++..+|+|||++|||++++++++++..+||+|+.|++++++. +.+.+|++|. .+..|||+|||+|+
T Consensus 308 ~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~ 374 (531)
T TIGR02346 308 PSKFELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTK 374 (531)
T ss_pred CCHHHHHHHHHHHCCEEecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCH
Confidence 999999999999999999999999999999999999998643 4689999998 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 628 DNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 628 ~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
.+++|+||+++||++++++++.+++|||||||++..+
T Consensus 375 ~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 375 NLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHH
Confidence 9999999999999999999999999999999999753
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.6e-39 Score=407.27 Aligned_cols=269 Identities=23% Similarity=0.312 Sum_probs=251.4
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCC--CCCc------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGD--ENDR------------ 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~--~~~~------------ 406 (1832)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++. .+..
T Consensus 73 ~~~~~~GDGTt---t~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~s 149 (464)
T cd00309 73 SQDDEVGDGTT---TVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNS 149 (464)
T ss_pred HHHhHhCCchh---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccc
Confidence 56789999999 999999999999999999999999999999999999999998888762 2111
Q ss_pred ---hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEec
Q 000226 407 ---ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILG 483 (1832)
Q Consensus 407 ---~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~ 483 (1832)
..|.+.|+.|+++|+..++++.. .+|. ++|+|++++||++.||++++|++|+|++.++.|++.++||||+|++
T Consensus 150 K~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~ 225 (464)
T cd00309 150 KLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLD 225 (464)
T ss_pred cccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEe
Confidence 24999999999999999987532 4555 8999999999999999999999999999999999999999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCC
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGA 563 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA 563 (1832)
++|++ |||++++|++.|+++|.++||.+++++++.+|+|||++|||
T Consensus 226 ~~Le~----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa 271 (464)
T cd00309 226 CKLEY----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGA 271 (464)
T ss_pred cCcce----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Confidence 99999 99999999999999999999999999999999999999999
Q ss_pred EEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHH
Q 000226 564 QIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFA 643 (1832)
Q Consensus 564 ~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a 643 (1832)
++++++++++...||+|+.|++.++++ +++++|++|..+.+|||+|||+|..+|+|+||+++||+++
T Consensus 272 ~ii~~~~~~~~~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~ 338 (464)
T cd00309 272 TIVSRLEDLTPEDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCA 338 (464)
T ss_pred EEecccccCCcccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999764 5899999999889999999999999999999999999999
Q ss_pred HHHHHhcCeEEeCCCccCCC
Q 000226 644 AYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 644 ~~~l~lE~~~l~GgGa~~~~ 663 (1832)
+++++.++.||||||++|..
T Consensus 339 ~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 339 VRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred HHHHHHcCCcccCCcHHHHH
Confidence 99999999999999999975
No 30
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=365.17 Aligned_cols=321 Identities=20% Similarity=0.266 Sum_probs=286.8
Q ss_pred CCccCCC-----ccccCCCCCCchhhhhhcccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHH
Q 000226 311 VDFEKEG-----LLWIPPEPADEEDEREAILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGH 384 (1832)
Q Consensus 311 ~d~~~~~-----~~w~pp~p~~~~d~~~~~~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~ 384 (1832)
|-.-||| .|-+..|.+- +|++-. -||+|+||||| |+++||++|++++++++.+++||..|+.||
T Consensus 56 v~VTNDGAtILksi~vDnpaAk-------vLv~~S~vQD~EvGDGTT---SV~vlaaeLlreAeklv~~kiHPq~Ii~Gy 125 (527)
T KOG0363|consen 56 VMVTNDGATILKSIGVDNPAAK-------VLVDISKVQDDEVGDGTT---SVTVLAAELLREAEKLVNQKIHPQTIISGY 125 (527)
T ss_pred eEEecchHHHHHhcCCCCchhh-------heeccccccccccCCCce---ehHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 4444555 3555555443 788877 56889999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCcCCCCCCCc--------------------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEE
Q 000226 385 FRALVAQLLQVENLPVGDENDR--------------------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKC 444 (1832)
Q Consensus 385 ~~al~~qLl~~~~i~~~~~~~~--------------------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkk 444 (1832)
+.|...++..+...+++...+. ...+++|+.|+++|+.+++- .-|+ +.|.|.|
T Consensus 126 R~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkG------s~nL-~~IqIIK 198 (527)
T KOG0363|consen 126 RMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKG------STNL-EAIQIIK 198 (527)
T ss_pred HHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------CCCc-cceeeeh
Confidence 9999999999998887654332 25678899999999999873 3345 6699999
Q ss_pred ecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecccccccccc--------cChhhHHHHHHHHHHHHHHHHHHH
Q 000226 445 LACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVA--------NHLSSVDTLLQQEMDHLKMAVTKI 516 (1832)
Q Consensus 445 i~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~~Ley~r~~--------~~~~sl~~il~qE~e~L~~~V~rI 516 (1832)
+.||++.||.+-+|++++|.+-- ..|++++||||||-+.+++..|+. .....+.++-..|++.++..|+||
T Consensus 199 ~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI 277 (527)
T KOG0363|consen 199 KLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKI 277 (527)
T ss_pred hcCCccccccccccceeccccCC-CCcccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998654 579999999999999999998764 245667777788999999999999
Q ss_pred HhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccC
Q 000226 517 DAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAG 596 (1832)
Q Consensus 517 ~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~ 596 (1832)
.+++.|+.+...-|.++..++|..+||..+.+...+-+||+|.+||+.|++.+|+....+||+|+.++...+++
T Consensus 278 ~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGe------ 351 (527)
T KOG0363|consen 278 LKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGE------ 351 (527)
T ss_pred HhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCC
Q 000226 597 QGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLP 662 (1832)
Q Consensus 597 ~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~ 662 (1832)
++++.|.||.-...|||+|||++.++|+|.+|.++||||++-..+.|++++.|||+.++
T Consensus 352 -------d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm 410 (527)
T KOG0363|consen 352 -------DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEM 410 (527)
T ss_pred -------cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHH
Confidence 47999999999899999999999999999999999999999999999999999999885
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-38 Score=399.64 Aligned_cols=276 Identities=22% Similarity=0.293 Sum_probs=250.9
Q ss_pred ccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCC---CCCCc-----
Q 000226 336 LFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVG---DENDR----- 406 (1832)
Q Consensus 336 ~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~---~~~~~----- 406 (1832)
+.+.. .+|+++||||| |+++|+++|++++.++++.|+||..|++||.+|+..++..+++++.+ +..+.
T Consensus 67 l~~~a~~~~~~~GDGTT---t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ 143 (472)
T cd03341 67 LVMASQMQEEEIGDGTN---LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSK 143 (472)
T ss_pred HHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHH
Confidence 33444 56889999999 99999999999999999999999999999999999999999887654 11221
Q ss_pred ----------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecC
Q 000226 407 ----------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDK 476 (1832)
Q Consensus 407 ----------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~n 476 (1832)
.+|.+.|+.|+++|+..++++ +.+.+|+ +.|+|++++||+..||++++|++|+++.. .|+++++|
T Consensus 144 i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~--~~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n 218 (472)
T cd03341 144 ALKTAIASKQYGNEDFLSPLVAEACISVLPE--NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKK 218 (472)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHhhc--cCCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccC
Confidence 147889999999999999865 2357888 78999999999999999999999988764 45699999
Q ss_pred CeEEEecccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHH
Q 000226 477 PRFLILGGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLER 556 (1832)
Q Consensus 477 prILLl~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~Ler 556 (1832)
|||+|++++|++ |++|||++++|++.|+++|.++||.+++++++.+|+|
T Consensus 219 ~~Ili~~~~Le~-------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~ 267 (472)
T cd03341 219 AKVAVFSCPFDI-------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRR 267 (472)
T ss_pred CcEEEEeccccC-------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCC-CceeEEEecCCCHHHHHHHHH
Q 000226 557 IARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLKGANGDNLKKAKH 635 (1832)
Q Consensus 557 IAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~-~~g~TIlLRG~s~~~L~evKr 635 (1832)
||++|||++++++++++...||+|+.|+++++++ +.+++|++|.. +.+|||+|||+|+.+++|+||
T Consensus 268 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er 334 (472)
T cd03341 268 LCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVER 334 (472)
T ss_pred HHHHhCCEEecccccCCHhHCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHH
Confidence 9999999999999999999999999999999754 57999999987 889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 636 VVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 636 ~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
.++||++++++++.++++|||||++|..
T Consensus 335 ~i~DAl~~~~~ai~~~~vVpGGG~~e~~ 362 (472)
T cd03341 335 AIDDGVNVFKSLTKDGRFVPGAGATEIE 362 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEeCcCHHHHH
Confidence 9999999999999999999999999975
No 32
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.6e-38 Score=402.69 Aligned_cols=300 Identities=26% Similarity=0.393 Sum_probs=276.2
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCC-c-------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND-R------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~-~------------- 406 (1832)
.+|+++||||| |+++|+++|++++..++++|+||..|++|+..|+...+..+++++++...+ .
T Consensus 54 ~~~~~~GDGtt---s~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k 130 (485)
T PF00118_consen 54 SQDEEVGDGTT---SVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSK 130 (485)
T ss_dssp HHHHHTSSHHH---HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTS
T ss_pred HHHhhhccccc---eeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhccccccc
Confidence 45679999999 999999999999999999999999999999999999999998876654332 1
Q ss_pred --hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecc
Q 000226 407 --ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGG 484 (1832)
Q Consensus 407 --~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~ 484 (1832)
..|.+.|++|+++|+..+..+ +|+ +.++|+++.||+..||++++|++|+++++++.|+++++||||+++++
T Consensus 131 ~~~~~~~~l~~li~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~ 203 (485)
T PF00118_consen 131 ISSSWSDHLSKLIVDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNC 203 (485)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESS
T ss_pred ccccchhhhhhhHHHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeec
Confidence 489999999999999555432 566 56999999999999999999999999999999999999999999999
Q ss_pred ccccccc------ccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHH
Q 000226 485 ALEYQRV------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIA 558 (1832)
Q Consensus 485 ~Ley~r~------~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIA 558 (1832)
+|++.+. .+....++.+.++|+++++.++++|.+.+++|||++++|++.|+++|.++||.++.+|+..+|+|||
T Consensus 204 ~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~ 283 (485)
T PF00118_consen 204 PLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIA 283 (485)
T ss_dssp EBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhh
Confidence 9999987 3467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEE--cCCCCceeEEEecCCCHHHHHHHHHH
Q 000226 559 RCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVE--GCPKPLGCTILLKGANGDNLKKAKHV 636 (1832)
Q Consensus 559 r~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fe--gc~~~~g~TIlLRG~s~~~L~evKr~ 636 (1832)
++|||.+++++++++...+|+|+.+++..+++ ++|++|+ +|.....|||+|||++..+++++|++
T Consensus 284 ~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~ 350 (485)
T PF00118_consen 284 RATGASIISSLDDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERS 350 (485)
T ss_dssp HHHTSBEBSSCGGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHH
T ss_pred cccCCcEecccccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHH
Confidence 99999999999999988899999998888765 5899999 68899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 637 VQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 637 l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
+++|++++++++.++.+|||||++|..
T Consensus 351 i~dal~~~~~~~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 351 IHDALKVLRSALKDGGVVPGGGATELH 377 (485)
T ss_dssp HHHHHHHHHHHHHSSEEEETTTHHHHH
T ss_pred HHHHHHHHHHhccCCceeecCcchhhh
Confidence 999999999999999999999999963
No 33
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=396.14 Aligned_cols=300 Identities=19% Similarity=0.192 Sum_probs=276.3
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc--------------
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR-------------- 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~-------------- 406 (1832)
-+|+++||||| |+|+||++|++++..++++|+||+.|++||.+|...++..+++++.+...+.
T Consensus 76 ~qd~e~GDGTT---tavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~ 152 (524)
T COG0459 76 KQDDEAGDGTT---TAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKS 152 (524)
T ss_pred HHHHHhcCchH---HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeee
Confidence 66889999999 9999999999999999999999999999999999999999999987744322
Q ss_pred -hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEee-ecccCCCc-eeecCCeEEEec
Q 000226 407 -ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKK-NVAHRRMT-SKIDKPRFLILG 483 (1832)
Q Consensus 407 -~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K-~~a~k~M~-~~i~nprILLl~ 483 (1832)
.++ +.|+.|+++|+..|+.... |+ +.|++.+..||+..|+++++|++|+| .+.|..|| +.++||+|||++
T Consensus 153 ~~~~-~~i~~lv~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d 225 (524)
T COG0459 153 ANSD-EEIGELVVEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLD 225 (524)
T ss_pred ccCh-HHHHHHHHHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEc
Confidence 245 8999999999999986421 66 77999999999999999999999999 67788999 899999999999
Q ss_pred ccccccccc-------cChhhHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEEecCccHHHHHHHHHcCCeEEeecChHHH
Q 000226 484 GALEYQRVA-------NHLSSVDTLLQQEM-DHLKMAVTKIDAHHPN-VLLVEKSVSRYAQDYLLAKDISLVLNIKRPLL 554 (1832)
Q Consensus 484 ~~Ley~r~~-------~~~~sl~~il~qE~-e~L~~~V~rI~~~~pn-VVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~L 554 (1832)
++|++.+.+ +....|..|.++|+ ++|..+|.+|+..+.| +++++++|++++++||.+.+|.+++++++++|
T Consensus 226 ~~l~~~k~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl 305 (524)
T COG0459 226 KKLEIKKPELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDL 305 (524)
T ss_pred cccccccccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhh
Confidence 999998864 24567889999999 9999999999999999 99999999999999999999999999999999
Q ss_pred -HHHHHHhCCEEccccCCCCCCCCce--eeEEEEEEeeccccccCCCCcccceEEEEEEcCCC--CceeEEEecCCCHHH
Q 000226 555 -ERIARCTGAQIVPSIDHLTSQKLGY--CDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK--PLGCTILLKGANGDN 629 (1832)
Q Consensus 555 -erIAr~TGA~Iissld~L~~~~LG~--C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~--~~g~TIlLRG~s~~~ 629 (1832)
++|+++|||.+++.++++++..+|. |+.|+..++++ ..+.+|++|.. +..|||+|||+|+.+
T Consensus 306 ~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~-------------~~~~~~~~~~~~~~~~~tI~vrgate~~ 372 (524)
T COG0459 306 GERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD-------------YDMEKLQERKAKAGGVATILVRGATEVE 372 (524)
T ss_pred HHHHHHccCceEEeecccCceeecCccccceEEEeeccc-------------hhhhhhhhhhhcCCCeEEEEECCccHhH
Confidence 8999999999999999999999999 99999998765 36889999985 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 630 LKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 630 L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
++|+||+++|||++++++++++++|+|||+++.+
T Consensus 373 ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~ 406 (524)
T COG0459 373 LDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIE 406 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHH
Confidence 9999999999999999999999999999999975
No 34
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-38 Score=354.93 Aligned_cols=313 Identities=19% Similarity=0.271 Sum_probs=278.3
Q ss_pred cccccc-cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCC-Cc------
Q 000226 335 ILFDDD-DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEN-DR------ 406 (1832)
Q Consensus 335 ~~~~~~-~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~-~~------ 406 (1832)
-|++.. -||.++||||| |+|+|||.||..+.+++++|+||+.|...|.+|....+..+.+++++.+- +.
T Consensus 84 mLvelS~aQD~eaGDGTT---sVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~ 160 (534)
T KOG0358|consen 84 MLVELSAAQDSEAGDGTT---SVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKS 160 (534)
T ss_pred HHHHhhhhccccccCCce---EEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHH
Confidence 455555 45779999999 99999999999999999999999999999999999999999998776432 21
Q ss_pred ----------hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecC
Q 000226 407 ----------ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDK 476 (1832)
Q Consensus 407 ----------~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~n 476 (1832)
..+...|++++++|+..|.. ..+..+.|+ ..|||.|..||.++|+++++|+||++......-|+++++
T Consensus 161 atTsLnSKvvSq~s~llapmAVdAV~kv~d-p~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriek 238 (534)
T KOG0358|consen 161 ATTSLNSKVVSQYSSLLAPMAVDAVLKVID-PENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEK 238 (534)
T ss_pred HHhHhhHHHHHhhccccchHHHHHHHhccC-cccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhh
Confidence 25566789999999998863 234557888 778999999999999999999999999887778999999
Q ss_pred CeEEEeccccccccc-------ccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCc-----cHHHHHHHHHcCCe
Q 000226 477 PRFLILGGALEYQRV-------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSV-----SRYAQDYLLAKDIS 544 (1832)
Q Consensus 477 prILLl~~~Ley~r~-------~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~V-----s~~Al~~L~~~gI~ 544 (1832)
+||-|++|-|..+|+ .+.+..++.+++.|+.||.+++.+|.+.|.||+++||+| +++|++||.+-+|+
T Consensus 239 AkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkim 318 (534)
T KOG0358|consen 239 AKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIM 318 (534)
T ss_pred ceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEE
Confidence 999999999998875 357899999999999999999999999999999999975 88999999999999
Q ss_pred EEeecChHHHHHHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCC-CceeEEEec
Q 000226 545 LVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPK-PLGCTILLK 623 (1832)
Q Consensus 545 ~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~-~~g~TIlLR 623 (1832)
++..+.++++|-|++.+|+..+.++|++++.+||+++.++...- .| . .+++.+.|+.+ ..+|||++|
T Consensus 319 vikdieRediefick~l~c~Pia~id~f~~d~Lg~adlveE~~~------~G---~---gkivk~tg~~n~g~tvsil~R 386 (534)
T KOG0358|consen 319 VIKDIEREDIEFICKTLGCKPIADIDHFTADKLGSADLVEETDS------SG---E---GKIVKITGIQNAGRTVSILLR 386 (534)
T ss_pred EEccccHhhHHHHHhhcCCeecchhhhcChhhcCcchhhhhccc------CC---C---ccEEEEEEeecCCCceEEEEe
Confidence 99999999999999999999999999999999999998876531 11 1 26888889887 689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 624 GANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 624 G~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|++...|+|.+|.++||+|++|.+++...+++|||+-+++.
T Consensus 387 Gsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEiei 427 (534)
T KOG0358|consen 387 GSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEI 427 (534)
T ss_pred cCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHH
Confidence 99999999999999999999999999999999999988764
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=355.50 Aligned_cols=312 Identities=19% Similarity=0.201 Sum_probs=282.4
Q ss_pred hcccccccc-cCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhC-cCCCCCCC------
Q 000226 334 AILFDDDDD-EGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVEN-LPVGDEND------ 405 (1832)
Q Consensus 334 ~~~~~~~~~-ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~-i~~~~~~~------ 405 (1832)
.+|++..+. |.++||||| +++++|++|++++.+++.+++||+.++.||+.|+..++....+ +..+.+.-
T Consensus 76 KiLvelaq~qd~evgDgtt---svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Li 152 (545)
T KOG0360|consen 76 KVLVELAQLQDEEVGDGTT---SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILI 152 (545)
T ss_pred HHHHHHHHhccccccCCce---EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHH
Confidence 488888865 679999999 9999999999999999999999999999999999999887764 44432211
Q ss_pred -----------chhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceee
Q 000226 406 -----------RESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKI 474 (1832)
Q Consensus 406 -----------~~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i 474 (1832)
...-.+.++.++++|+..++--..+|..+.|-+-|.|.|..|++..||.++.|+.++..+++..|+.++
T Consensus 153 n~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i 232 (545)
T KOG0360|consen 153 NLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRI 232 (545)
T ss_pred HHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhcccccc
Confidence 025678899999999999886545677777779999999999999999999999999999999999999
Q ss_pred cCCeEEEeccccccccc-------ccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEe
Q 000226 475 DKPRFLILGGALEYQRV-------ANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVL 547 (1832)
Q Consensus 475 ~nprILLl~~~Ley~r~-------~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~ 547 (1832)
+|+||++++|.|.-.+. ......++.+.+.|.+..+..+++|++.++||||+.++|++.+++||.++|+++|+
T Consensus 233 ~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVr 312 (545)
T KOG0360|consen 233 KNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVR 312 (545)
T ss_pred ccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhH
Confidence 99999999999887653 35678889999999999999999999999999999999999999999999999999
Q ss_pred ecChHHHHHHHHHhCCEEccccCCCC------CCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEE
Q 000226 548 NIKRPLLERIARCTGAQIVPSIDHLT------SQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTIL 621 (1832)
Q Consensus 548 nVk~~~LerIAr~TGA~Iissld~L~------~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIl 621 (1832)
++++.+|++||++|||++++++.++. +..+|+|+.|.+.+|++ +.++.+.|.+.. .|+|+
T Consensus 313 R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiI 378 (545)
T KOG0360|consen 313 RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASII 378 (545)
T ss_pred HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEE
Confidence 99999999999999999999998664 57899999999999887 579999998776 99999
Q ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCC
Q 000226 622 LKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLP 662 (1832)
Q Consensus 622 LRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~ 662 (1832)
|||+|...++|++|.+|||+++++..+.++++||||||++.
T Consensus 379 LrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~ 419 (545)
T KOG0360|consen 379 LRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVET 419 (545)
T ss_pred EecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHH
Confidence 99999999999999999999999999999999999999985
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=350.33 Aligned_cols=303 Identities=21% Similarity=0.261 Sum_probs=280.1
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCC--------------c
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDEND--------------R 406 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~--------------~ 406 (1832)
-+|+..||||| ++|+|.++|++++..++..|+||..|..||..|....|..++.++.+.+.+ .
T Consensus 82 Aqdd~tGDGtt---S~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~ 158 (520)
T KOG0359|consen 82 AQDDITGDGTT---SVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVH 158 (520)
T ss_pred HhhcccCCCcc---eEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCccc
Confidence 45678999999 999999999999999999999999999999999999999999776654322 1
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecccc
Q 000226 407 ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGAL 486 (1832)
Q Consensus 407 ~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~~L 486 (1832)
+.-.+.+++++++|+..+.+ ..+.+|+ .+|+|.+..-++..|+.+|+|+|++++..|+.||++++|+.||+++-+|
T Consensus 159 ~~la~~lt~~vv~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSL 234 (520)
T KOG0359|consen 159 AELADVLTPIVVDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSL 234 (520)
T ss_pred HHHHhHhHHHHHhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccc
Confidence 47788899999999999982 4567999 9999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-------ChhhHHHHHHHHHHHHHHHHHHHHhcCC----cEEEEecCccHHHHHHHHHcCCeEEeecChHHHH
Q 000226 487 EYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHP----NVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 555 (1832)
Q Consensus 487 ey~r~~~-------~~~sl~~il~qE~e~L~~~V~rI~~~~p----nVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~Le 555 (1832)
||.|.+- ...+-+.+...|++++.+.+.+|+.++. -|||.||+|++..++.|.+.||.+.++.|+..||
T Consensus 235 EYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmE 314 (520)
T KOG0359|consen 235 EYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNME 314 (520)
T ss_pred cccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHH
Confidence 9999762 3455688899999999999999998875 5788899999999999999999999999999999
Q ss_pred HHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHH
Q 000226 556 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKH 635 (1832)
Q Consensus 556 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr 635 (1832)
|+..+||+..+.|+|+|++..||+|+.+++.++++| +|+|+|+|+.|..|||+++|+|...+..+|.
T Consensus 315 RL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEE-------------kfTFIE~~~~p~S~TiLikgpnkht~tQikd 381 (520)
T KOG0359|consen 315 RLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEE-------------KFTFIEKCNNPSSVTILIKGPNKHTITQIKD 381 (520)
T ss_pred HHHHhhccceecccccCChhhccccceeEEeeccce-------------eeEeeecCCCCcceEEEEeCCccchHHHHHH
Confidence 999999999999999999999999999999999884 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 636 VVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 636 ~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
+++|++.+++|.+.++.+++|+|+.+..
T Consensus 382 airdglrav~ntl~d~~~i~Gaga~~va 409 (520)
T KOG0359|consen 382 AIRDGLRAVKNTLEDKCGIPGAGAFEVA 409 (520)
T ss_pred HHhhHHHHHHHHhhhcccccCchHHHHH
Confidence 9999999999999999999999998853
No 37
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.7e-35 Score=372.62 Aligned_cols=276 Identities=17% Similarity=0.187 Sum_probs=245.2
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||..|+..++..+++++++..+.. ..+.+
T Consensus 79 ~qd~e~GDGTT---tvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~ 155 (542)
T PRK00013 79 KTNDVAGDGTT---TATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDE 155 (542)
T ss_pred hcCcccCCccc---hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchH
Confidence 66889999999 9999999999999999999999999999999999999999999887754211 25889
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC-------CceeecCCeEEEecc
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILGG 484 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~-------M~~~i~nprILLl~~ 484 (1832)
.|+.|+++|+..++++ +.|.|++..| ...++++++|++|++++.++. |++.++||+||++++
T Consensus 156 ~ls~lv~~Av~~v~~~----------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~ 224 (542)
T PRK00013 156 EIGKLIAEAMEKVGKE----------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDK 224 (542)
T ss_pred HHHHHHHHHHHHhCcC----------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcC
Confidence 9999999999999753 2488998876 888999999999999999984 589999999999998
Q ss_pred cccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcC------CeEEeecC-----hHH
Q 000226 485 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD------ISLVLNIK-----RPL 553 (1832)
Q Consensus 485 ~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~g------I~~v~nVk-----~~~ 553 (1832)
.|.. .++ |..++++|.+.+++|||++++|++.|+++|..++ |.+|++++ +.+
T Consensus 225 ~i~~---------~~~--------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~ 287 (542)
T PRK00013 225 KISN---------IQD--------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAM 287 (542)
T ss_pred ccCC---------HHH--------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhh
Confidence 5532 222 3466889999999999999999999999999997 88888775 889
Q ss_pred HHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCc------------
Q 000226 554 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 616 (1832)
Q Consensus 554 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~------------ 616 (1832)
|+|||++|||.+++ ++++++...||+|+.|++.. +++++|+||..+.
T Consensus 288 l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~ 351 (542)
T PRK00013 288 LEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQ 351 (542)
T ss_pred HHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 79999999999999999864 3789999998765
Q ss_pred -----------------------eeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 617 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 617 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
.|||+|||+|+.+++|++|+++||++++++++.++ |||||||++.+.
T Consensus 352 ~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 352 IEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 78999999999999999999999999999999997 999999999753
No 38
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.7e-35 Score=372.63 Aligned_cols=274 Identities=17% Similarity=0.179 Sum_probs=240.6
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++..+.. .++.+
T Consensus 79 ~qd~e~GDGTT---tvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~ 155 (542)
T PRK12849 79 KTNDVAGDGTT---TATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDE 155 (542)
T ss_pred hcCCccCCCcc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChH
Confidence 66889999999 9999999999999999999999999999999999999999999887653221 36789
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccc-eeEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSE-SMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~d-S~vi~GvVf~K~~a~k~-------M~~~i~nprILLl~ 483 (1832)
.|+.|+++|+..+.++ +.+.|+ .||+..| +++++|++|++++.++. |++.++||+||+++
T Consensus 156 ~l~~lv~~Av~~v~~~----------g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 156 EIGELIAEAMEKVGKD----------GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHHhccC----------CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 9999999999999753 234454 5888886 79999999999999984 69999999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHc------CCeEEeecC-----hH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----RP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~~v~nVk-----~~ 552 (1832)
+.|.. .+ .+..++++|.+.+++|||++++|++.|+++|.++ ||.+|++++ +.
T Consensus 224 ~~i~~---------~~--------~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~ 286 (542)
T PRK12849 224 KKISS---------LQ--------DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKA 286 (542)
T ss_pred CCcCC---------HH--------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHh
Confidence 85532 11 1344688999999999999999999999999999 899999886 55
Q ss_pred HHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCC------------
Q 000226 553 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 615 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~------------ 615 (1832)
+|+|||++|||.+++ ++++++...||+|+.|++.+ +++++|+||..+
T Consensus 287 ~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~ 350 (542)
T PRK12849 287 MLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRR 350 (542)
T ss_pred HHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999 68999988999999999764 368889999875
Q ss_pred -----------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 616 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 616 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
..|||+|||+|+.+++|+||+++||++++++++.++ |||||||++..
T Consensus 351 ~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ 420 (542)
T PRK12849 351 QIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLR 420 (542)
T ss_pred HHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHH
Confidence 389999999999999999999999999999999997 99999999975
No 39
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=5.3e-35 Score=372.94 Aligned_cols=274 Identities=15% Similarity=0.136 Sum_probs=241.9
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 91 ~qd~evGDGTT---tvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~ 167 (555)
T PTZ00114 91 KTNDKAGDGTT---TATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDV 167 (555)
T ss_pred hhccccCCccc---HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChH
Confidence 66899999999 9999999999999999999999999999999999999999999887653221 25678
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccce-eEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vi~GvVf~K~~a~k~-------M~~~i~nprILLl~ 483 (1832)
.|++|+++|+..|+++ + .|.++.||++.|+ ++++|++|++++.++. |+..++||+||+++
T Consensus 168 ~l~~li~eAv~~vg~~----------g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d 235 (555)
T PTZ00114 168 EIGSLIADAMDKVGKD----------G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTD 235 (555)
T ss_pred HHHHHHHHHHHHhCcC----------C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEc
Confidence 8999999999999753 1 2777889999998 8999999999999985 58999999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcC------CeEEee-----cChH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKD------ISLVLN-----IKRP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~g------I~~v~n-----Vk~~ 552 (1832)
++|+.. . .+..++++|.+.+.+|||++++|++.|+++|..++ |.++++ +++.
T Consensus 236 ~~L~~~------~-----------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~ 298 (555)
T PTZ00114 236 KKISSI------Q-----------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKD 298 (555)
T ss_pred CCCCCH------H-----------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHH
Confidence 999831 1 15566789999999999999999999999999997 888866 7889
Q ss_pred HHHHHHHHhCCEEcccc------CCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCC-------------
Q 000226 553 LLERIARCTGAQIVPSI------DHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCP------------- 613 (1832)
Q Consensus 553 ~LerIAr~TGA~Iissl------d~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~------------- 613 (1832)
+|+|||++|||+++++. ++++...||+|+.|++++ . .+++|+||.
T Consensus 299 ~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~ 362 (555)
T PTZ00114 299 ILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLR 362 (555)
T ss_pred HHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999997 778888899999999987 1 355666665
Q ss_pred ----------------------CCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 614 ----------------------KPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 614 ----------------------~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
.+..|||+|||+|+.+++|++|+++||++++++++.++ |||||||++.+
T Consensus 363 ~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~ 433 (555)
T PTZ00114 363 SQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLR 433 (555)
T ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHH
Confidence 56799999999999999999999999999999999987 99999999975
No 40
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7e-35 Score=370.41 Aligned_cols=275 Identities=16% Similarity=0.187 Sum_probs=244.4
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+|+||++|++++.+++++|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 80 ~qd~e~GDGTT---tvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~ 156 (541)
T PRK12851 80 KTNDVAGDGTT---TATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDA 156 (541)
T ss_pred hhhHhhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChH
Confidence 66889999999 9999999999999999999999999999999999999999998887653221 26889
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC-------CceeecCCeEEEecc
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILGG 484 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~-------M~~~i~nprILLl~~ 484 (1832)
.|+.|+++|+..|+++ +.|.|++.. |...++++++|++|++++.++. |+++++||+||++++
T Consensus 157 ~l~~lv~~Av~~vg~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~ 225 (541)
T PRK12851 157 EIGRLVAEAMEKVGNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEK 225 (541)
T ss_pred HHHHHHHHHHHHhccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcC
Confidence 9999999999999753 346777765 6778899999999999999984 999999999999999
Q ss_pred cccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCC------eEEee-----cChHH
Q 000226 485 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLN-----IKRPL 553 (1832)
Q Consensus 485 ~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~~v~n-----Vk~~~ 553 (1832)
+|+. ++ .+..++++|.+.+++|||++++|++.|+++|..+|| .+|++ +++.+
T Consensus 226 ~i~~---------~~--------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~ 288 (541)
T PRK12851 226 KISN---------LQ--------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAM 288 (541)
T ss_pred CcCc---------HH--------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhH
Confidence 8642 11 266678899999999999999999999999999997 67775 89999
Q ss_pred HHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCc------------
Q 000226 554 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 616 (1832)
Q Consensus 554 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~------------ 616 (1832)
|+|||++|||++++ ++++++...||+|+.|++++ +++++|+||..+.
T Consensus 289 l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~ 352 (541)
T PRK12851 289 LEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK----------------ENTTIIDGAGSKTEIEGRVAQIRAQ 352 (541)
T ss_pred HHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc----------------ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 68888888999999999876 3688899987753
Q ss_pred -----------------------eeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 617 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 617 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
.|||+|||+|+.+++|+||+++||++++++++.++ |||||||++.+
T Consensus 353 ~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~ 421 (541)
T PRK12851 353 IEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLR 421 (541)
T ss_pred HHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHH
Confidence 78999999999999999999999999999999997 99999999975
No 41
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1e-34 Score=368.35 Aligned_cols=275 Identities=19% Similarity=0.199 Sum_probs=240.9
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++..+.. ..+.+
T Consensus 78 ~qd~e~GDGTT---tvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~ 154 (524)
T TIGR02348 78 KTNDVAGDGTT---TATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDE 154 (524)
T ss_pred ccCceeCCCcc---hHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChH
Confidence 67889999999 9999999999999999999999999999999999999999999887754211 26788
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCc-cceeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vi~GvVf~K~~a~k~M-------~~~i~nprILLl~ 483 (1832)
.|+.|+++|+..++++ +.|.|+. ||.. .++++++|++|++++.++.| ++.++||+||+++
T Consensus 155 ~l~~lv~~A~~~v~~~----------~~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 222 (524)
T TIGR02348 155 EIGSLIAEAMEKVGKD----------GVITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITD 222 (524)
T ss_pred HHHHHHHHHHHHhCcC----------CcEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeecc
Confidence 9999999999999753 2345554 6666 67999999999999999865 8999999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHc------CCeEEeecC-----hH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----RP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~~v~nVk-----~~ 552 (1832)
+.|... ++ +..++++|.+.+++|||++++|++.|+++|..+ ||.+|++++ +.
T Consensus 223 ~~i~~~---------~~--------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~ 285 (524)
T TIGR02348 223 KKISNI---------KD--------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKA 285 (524)
T ss_pred CCcCCH---------HH--------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhh
Confidence 865421 11 466788999999999999999999999999987 888998774 48
Q ss_pred HHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCc-----------
Q 000226 553 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL----------- 616 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~----------- 616 (1832)
+|+|||++|||++++ ++++++..+||+|+.|++.+ +++++|+||..+.
T Consensus 286 ~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~ 349 (524)
T TIGR02348 286 MLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKA 349 (524)
T ss_pred hHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 89999999999999999875 3688999987654
Q ss_pred ------------------------eeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 617 ------------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 617 ------------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
.+||+|||+|+.+++|++|.++||++++++++.++ ||||||+++.+.
T Consensus 350 ~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~ 420 (524)
T TIGR02348 350 QIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRA 420 (524)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 58899999999999999999999999999999997 999999999753
No 42
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.9e-34 Score=365.27 Aligned_cols=274 Identities=17% Similarity=0.170 Sum_probs=240.9
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+++||++|++++.++++.|+||..|++||..|+..++..+++++++..+.. .+..+
T Consensus 77 ~qd~e~GDGTT---tvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~ 153 (520)
T cd03344 77 KTNDVAGDGTT---TATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDE 153 (520)
T ss_pred hhccccCCCcc---hHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChH
Confidence 56889999999 9999999999999999999999999999999999999999999887654211 14478
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccc-eeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSE-SMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~d-S~vi~GvVf~K~~a~k~M-------~~~i~nprILLl~ 483 (1832)
.|++|+++|+..++++ +.|.| ..||+..| +++++|++|++++.++.| +.+++||+||+++
T Consensus 154 ~l~~lv~~A~~~v~~~----------~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 221 (520)
T cd03344 154 EIGELIAEAMEKVGKD----------GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTD 221 (520)
T ss_pred HHHHHHHHHHHHhccC----------CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEEC
Confidence 8999999999998753 23555 46999999 799999999999998764 5789999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCC------eEEeec-----ChH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLNI-----KRP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~~v~nV-----k~~ 552 (1832)
++|... +. +..++++|.+.+++|||++++|++.|+++|..+|| .+++.+ +++
T Consensus 222 ~~l~~~---------~~--------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~ 284 (520)
T cd03344 222 KKISSI---------QE--------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKA 284 (520)
T ss_pred CCCCCH---------HH--------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHH
Confidence 997432 11 44467899999999999999999999999999999 777655 899
Q ss_pred HHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCC------------
Q 000226 553 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 615 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~------------ 615 (1832)
+|+|||++|||.+++ +++.++...||+|+.|++.+ +++++|+||..+
T Consensus 285 ~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~ 348 (520)
T cd03344 285 MLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK----------------DDTTIIGGAGDKAAIKARIAQIRK 348 (520)
T ss_pred HHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee----------------ceEEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999 78888888999999999876 368899998765
Q ss_pred -----------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 616 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 616 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
..|||+|||+|+.+++|++|.++||++++++++.++ |||||||++..
T Consensus 349 ~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~ 418 (520)
T cd03344 349 QIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLR 418 (520)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHH
Confidence 589999999999999999999999999999999997 99999999975
No 43
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.5e-34 Score=361.85 Aligned_cols=275 Identities=16% Similarity=0.175 Sum_probs=238.8
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++.+..+.. .+..+
T Consensus 80 ~qd~e~GDGTT---t~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~ 156 (544)
T PRK12850 80 KTNDLAGDGTT---TATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDE 156 (544)
T ss_pred hhcchhcCCcc---hHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHH
Confidence 57889999999 9999999999999999999999999999999999999999998887653211 14578
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCC-------ceeecCCeEEEecc
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILGG 484 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M-------~~~i~nprILLl~~ 484 (1832)
.|+.|+++|+..|+++ +.+|+ +. .+..| .++++++|++|++++.++.| +..++||+||++++
T Consensus 157 ~l~~lv~eAv~~vg~~----g~i~v-~~---~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~ 225 (544)
T PRK12850 157 SIGEMIAEAMDKVGKE----GVITV-EE---AKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEK 225 (544)
T ss_pred HHHHHHHHHHHHhccc----Cceee-EE---ccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEec
Confidence 8999999999999753 23333 11 12233 68899999999999999864 89999999999998
Q ss_pred cccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCC------eEEee-----cChHH
Q 000226 485 ALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDI------SLVLN-----IKRPL 553 (1832)
Q Consensus 485 ~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI------~~v~n-----Vk~~~ 553 (1832)
.|.- ++ .+..++++|.+.+++|||++++|++.|+++|..+|| .+|++ +++.+
T Consensus 226 ~i~~---------~~--------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~ 288 (544)
T PRK12850 226 KISN---------LQ--------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAM 288 (544)
T ss_pred ccCC---------HH--------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHH
Confidence 6531 11 267778899999999999999999999999999999 88887 89999
Q ss_pred HHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCc------------
Q 000226 554 LERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPL------------ 616 (1832)
Q Consensus 554 LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~------------ 616 (1832)
|+|||++|||++++ ++++++...||+|+.|++.+ +++++|+||..+.
T Consensus 289 le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~ 352 (544)
T PRK12850 289 LEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQ 352 (544)
T ss_pred HHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 78888888999999998775 3688999988753
Q ss_pred -----------------------eeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 617 -----------------------GCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 617 -----------------------g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
.|||+|||+|+.+++|+||+++||++++++++.++ |||||||++..
T Consensus 353 ~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~ 421 (544)
T PRK12850 353 IEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLR 421 (544)
T ss_pred HHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHH
Confidence 79999999999999999999999999999999996 99999999975
No 44
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.9e-34 Score=363.01 Aligned_cols=275 Identities=16% Similarity=0.165 Sum_probs=241.1
Q ss_pred ccccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhH
Q 000226 340 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWL 410 (1832)
Q Consensus 340 ~~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~ 410 (1832)
..+|+++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..+++++++..+.. .+-.
T Consensus 79 ~~q~~e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~ 155 (545)
T PRK12852 79 SKTNDLAGDGTT---TATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGD 155 (545)
T ss_pred hhcCceecCCcc---hHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCCh
Confidence 366899999999 9999999999999999999999999999999999999999998887653321 1336
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCc-cceeEEEeeeEeeecccCC-------CceeecCCeEEEe
Q 000226 411 EIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLIL 482 (1832)
Q Consensus 411 ~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vi~GvVf~K~~a~k~-------M~~~i~nprILLl 482 (1832)
+.|+.|+++|+..|+++ +.|.|+. ||.. .++++++|++|++++.++. |+..++||+|||+
T Consensus 156 ~~l~~li~eA~~~vg~~----------g~i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 156 AAIGKMIAQAMQKVGNE----------GVITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHHhccC----------Cceeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 78999999999999864 2455554 7775 7999999999999999984 9999999999999
Q ss_pred cccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHc------CCeEEeecC-----h
Q 000226 483 GGALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAK------DISLVLNIK-----R 551 (1832)
Q Consensus 483 ~~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~------gI~~v~nVk-----~ 551 (1832)
++.|.. + +++..+++.|.+.+++|||++++|++.|+++|..+ +|.+|++.+ +
T Consensus 224 d~~i~~---------~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 224 EKKLSG---------L--------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred cCccCC---------H--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 875532 1 25666788999999999999999999999999986 799998654 8
Q ss_pred HHHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCC-----------
Q 000226 552 PLLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP----------- 615 (1832)
Q Consensus 552 ~~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~----------- 615 (1832)
.+|+|||++|||++++ ++++++...||+|+.|++.+ +.+++|+||..+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~ 350 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIVNGAGKKADIEARVGQIK 350 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999999 78999988999999999886 367888888763
Q ss_pred ------------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 616 ------------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 616 ------------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
..|||+|||+|+.+++|+||+++||++++++++.++ |||||||++.+
T Consensus 351 ~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~ 421 (545)
T PRK12852 351 AQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLR 421 (545)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHH
Confidence 678999999999999999999999999999999997 99999999975
No 45
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3e-33 Score=355.34 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=235.0
Q ss_pred ccccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhH
Q 000226 340 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWL 410 (1832)
Q Consensus 340 ~~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~ 410 (1832)
..+++++||||| |+++||++|++++.+++++|+||..|++||.+|+..++..++.++.+..+.. .++.
T Consensus 78 ~~~~~e~GDGTT---tvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~ 154 (529)
T CHL00093 78 SKTNDVAGDGTT---TATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGND 154 (529)
T ss_pred HhcCceecCCCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccCh
Confidence 456679999999 9999999999999999999999999999999999999999998887754221 2678
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCC-------CceeecCCeEEEec
Q 000226 411 EIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRR-------MTSKIDKPRFLILG 483 (1832)
Q Consensus 411 ~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~-------M~~~i~nprILLl~ 483 (1832)
+.|+.|+++|+..|+++ +.|.++- .+|...++++++|++|++++.++. |+..++||+||+++
T Consensus 155 ~~l~~lv~eAv~~vg~~----------g~i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 155 EEVGSMIADAIEKVGRE----------GVISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHHhccC----------CceeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 99999999999999753 2333322 234566789999999999999874 44469999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHH--HH----cCCeEEeec-----ChH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYL--LA----KDISLVLNI-----KRP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L--~~----~gI~~v~nV-----k~~ 552 (1832)
++|++.+. .+..++++|.+.+.+|||++++|++.|+.+| .+ .||.+|+++ ++.
T Consensus 224 ~~le~~~~----------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~ 287 (529)
T CHL00093 224 KKITLVQQ----------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKA 287 (529)
T ss_pred CCCCchHH----------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHH
Confidence 99997531 2667788999999999999999999877776 55 489999988 458
Q ss_pred HHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEc---------CCCC---
Q 000226 553 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEG---------CPKP--- 615 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~feg---------c~~~--- 615 (1832)
+|+|||++|||++++ ++++++..+||+|+.|++.+ +++++|++ |...
T Consensus 288 ~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~ 351 (529)
T CHL00093 288 MLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQ 351 (529)
T ss_pred HHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHH
Confidence 899999999999999 79999988999999999875 25677774 3221
Q ss_pred ----------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 616 ----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 616 ----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
..+||+|||+|+.+++|+||+++||++++++++.++ ||||||+++..
T Consensus 352 ~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~ 420 (529)
T CHL00093 352 IEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVH 420 (529)
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHH
Confidence 377899999999999999999999999999999997 99999999975
No 46
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=5.9e-33 Score=352.86 Aligned_cols=275 Identities=17% Similarity=0.155 Sum_probs=238.3
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
.+|+++||||| |+|+||++|++++.++++.|+||..|++||.+|+..++..+.+++++...+. .+.++
T Consensus 80 ~qd~e~GDGTT---TvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~ 156 (546)
T PRK14104 80 KSADAAGDGTT---TATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDA 156 (546)
T ss_pred hhcccccCccc---HHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCch
Confidence 66889999999 9999999999999999999999999999999999999999988877653321 25567
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCc-cceeEEEeeeEeeecccCCC-------ceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRR-SESMVVKGVVCKKNVAHRRM-------TSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~-~dS~vi~GvVf~K~~a~k~M-------~~~i~nprILLl~ 483 (1832)
.|+.|+++|+..|+++ +.|.|..+ +.. .++++++|++|++++.++.| +.+++||+||+++
T Consensus 157 ~i~~lv~~Av~~vg~~----------g~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d 224 (546)
T PRK14104 157 EIGKFLADAMKKVGNE----------GVITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINE 224 (546)
T ss_pred HHHHHHHHHHHHhccC----------CceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEeh
Confidence 7999999999999753 35666664 455 58999999999999999855 7889999999998
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHH------cCCeEEeecC-----hH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLA------KDISLVLNIK-----RP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~------~gI~~v~nVk-----~~ 552 (1832)
.. +.+++. |..+++.|.+.+++|||++++|++.|+++|.. .+|.+|++++ +.
T Consensus 225 ~~---------i~~~~~--------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~ 287 (546)
T PRK14104 225 KK---------LSSLNE--------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKA 287 (546)
T ss_pred hh---------hcCHHH--------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHH
Confidence 32 222322 56778899999999999999999999999985 5788887765 89
Q ss_pred HHHHHHHHhCCEEccc-----cCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCC------------
Q 000226 553 LLERIARCTGAQIVPS-----IDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKP------------ 615 (1832)
Q Consensus 553 ~LerIAr~TGA~Iiss-----ld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~------------ 615 (1832)
+|+|||++|||+++++ +++++...||+|+.+++.. +.+++++||..+
T Consensus 288 ~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~ 351 (546)
T PRK14104 288 MLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDK----------------ENTTIVNGAGKKADIEARVAQIKA 351 (546)
T ss_pred HHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcC----------------CEEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 8999989999999988622 468889999875
Q ss_pred -----------------------ceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 616 -----------------------LGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 616 -----------------------~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
..+||+|||+|+.+++|+||.++||++++++++.++ ||||||+++...
T Consensus 352 ~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~ 422 (546)
T PRK14104 352 QIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRA 422 (546)
T ss_pred HHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHH
Confidence 789999999999999999999999999999999997 999999999753
No 47
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.1e-32 Score=312.21 Aligned_cols=193 Identities=34% Similarity=0.495 Sum_probs=183.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecccc
Q 000226 407 ESWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGAL 486 (1832)
Q Consensus 407 ~~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~~L 486 (1832)
..|.+.|+.|+++|+..++++.. ++..++|+|++++||++.||++++|++|+|+++|+.|++.++||||||++++|
T Consensus 17 ~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~l 92 (209)
T cd03333 17 SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPL 92 (209)
T ss_pred hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCe
Confidence 57999999999999999987421 55559999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEc
Q 000226 487 EYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIV 566 (1832)
Q Consensus 487 ey~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA~Ii 566 (1832)
+| |||++++|++.|+++|.++||++++++++.+|+|||++|||+++
T Consensus 93 e~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii 138 (209)
T cd03333 93 EY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIV 138 (209)
T ss_pred eE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEe
Confidence 99 99999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 000226 567 PSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYH 646 (1832)
Q Consensus 567 ssld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~ 646 (1832)
+++++++.+.||+|+.|+++++++ +++++|+||..+.+|||+|||+|..+|+|+||+++||++|+|+
T Consensus 139 ~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~ 205 (209)
T cd03333 139 SSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRA 205 (209)
T ss_pred cccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765 6899999999999999999999999999999999999999999
Q ss_pred HHhc
Q 000226 647 LALE 650 (1832)
Q Consensus 647 l~lE 650 (1832)
++++
T Consensus 206 ~~~~ 209 (209)
T cd03333 206 AVEE 209 (209)
T ss_pred HhhC
Confidence 9864
No 48
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2e-33 Score=358.86 Aligned_cols=290 Identities=14% Similarity=0.150 Sum_probs=238.9
Q ss_pred ccccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc--------hhhHH
Q 000226 340 DDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR--------ESWLE 411 (1832)
Q Consensus 340 ~~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~--------~~w~~ 411 (1832)
..+|+++||||| |+++||++|++++.++++.|+||..|++||.+|+..++..+++++.+..+.. .++.+
T Consensus 134 ~~qd~evGDGTT---TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~ 210 (600)
T PLN03167 134 AKTNDLAGDGTT---TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNY 210 (600)
T ss_pred HhhhhhhCCCcc---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcH
Confidence 367899999999 9999999999999999999999999999999999999999998877653211 25677
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccce-eEEEeeeEeeecccC-------CCceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHR-------RMTSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vi~GvVf~K~~a~k-------~M~~~i~nprILLl~ 483 (1832)
.|+.|+++|+..|+++ +.|.++ .||+..|+ ++++|++|++++.++ +|+.+++||+|||++
T Consensus 211 ~i~~liaeAv~~Vg~~----------g~i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d 278 (600)
T PLN03167 211 EVGNMIAEAMSKVGRK----------GVVTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278 (600)
T ss_pred HHHHHHHHHHHHhccC----------CcEEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEc
Confidence 8999999999999753 223333 59999997 999999999999998 899999999999999
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHH------HcCCeEEeecC-----hH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLL------AKDISLVLNIK-----RP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~------~~gI~~v~nVk-----~~ 552 (1832)
+.|.. ..++.+ ++++|...+++|||++++|++.|+++|. ..+|.+|+..+ +.
T Consensus 279 ~~i~~------~~~l~~-----------~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~ 341 (600)
T PLN03167 279 KKITN------ARDLIG-----------ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQ 341 (600)
T ss_pred cccCC------HHHHHH-----------HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHH
Confidence 75432 222222 3457888999999999999999999999 77899999885 88
Q ss_pred HHHHHHHHhCCEEcc-----ccCCCCCCCCceeeEEEEEEeeccccccCCCCc--ccceEEEEEEcCC------------
Q 000226 553 LLERIARCTGAQIVP-----SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGK--KLSKTLMFVEGCP------------ 613 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis-----sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~--k~~ktl~~fegc~------------ 613 (1832)
.|+|||++|||++++ ++++++...||+|+.|++++... .+.++.|. ...+++.+|++|.
T Consensus 342 ~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t--~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l 419 (600)
T PLN03167 342 YLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTT--TIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKL 419 (600)
T ss_pred HHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccc--eeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHH
Confidence 999999999999999 78888889999999999987211 11111111 1124567777764
Q ss_pred C------CceeEEE-ecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 614 K------PLGCTIL-LKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 614 ~------~~g~TIl-LRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
. ..++||+ |||+|+.+++|+||+++|||+++++++.++ +|||||+++...
T Consensus 420 ~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 420 NERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred HHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 1 1256766 999999999999999999999999999999 999999999753
No 49
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-31 Score=309.92 Aligned_cols=304 Identities=19% Similarity=0.225 Sum_probs=271.2
Q ss_pred ccccccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCC---CCCCch-------
Q 000226 338 DDDDDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVG---DENDRE------- 407 (1832)
Q Consensus 338 ~~~~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~---~~~~~~------- 407 (1832)
+-..|+.++||||+ ++|+||++||++++++|..|++|.+|+.||..|....+..+.++.+. +..|.+
T Consensus 88 a~~~q~~~iGDgtn---fvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i 164 (537)
T KOG0362|consen 88 ATQMQEEEIGDGTN---FVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVI 164 (537)
T ss_pred HHHHHHHhhCCCce---EeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHH
Confidence 33467789999999 99999999999999999999999999999999999999888887543 222222
Q ss_pred -----hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEe
Q 000226 408 -----SWLEIITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLIL 482 (1832)
Q Consensus 408 -----~w~~~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl 482 (1832)
...++++.|+++|+..+.|. ..|++ ++|.|.||.||+..+|+++.|+||++.+... +++-+.+||.+.
T Consensus 165 ~skq~~~ed~l~~lVa~ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~--v~~ak~arvAvf 237 (537)
T KOG0362|consen 165 MSKQYGNEDFLTKLVAKACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPEGE--VKSAKDARVAVF 237 (537)
T ss_pred HHhhcchHHHHHHHHHHHHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccCCc--ccccccceeEEE
Confidence 44778999999999999985 23888 8999999999999999999999999887753 388889999999
Q ss_pred ccccccccccc-------ChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHH
Q 000226 483 GGALEYQRVAN-------HLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLE 555 (1832)
Q Consensus 483 ~~~Ley~r~~~-------~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~Le 555 (1832)
.||++..+++. +...+..+-+.|...+..+|+.|...|++||++.+.|...+++||.+.+|++++--++-+|.
T Consensus 238 ~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLr 317 (537)
T KOG0362|consen 238 ACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLR 317 (537)
T ss_pred ecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHH
Confidence 99999988764 35667777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEccccCCCCCCCCceeeEEEEEEeeccccccCCCCcccceEEEEEE-cCCCCceeEEEecCCCHHHHHHHH
Q 000226 556 RIARCTGAQIVPSIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKLSKTLMFVE-GCPKPLGCTILLKGANGDNLKKAK 634 (1832)
Q Consensus 556 rIAr~TGA~Iissld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~~ktl~~fe-gc~~~~g~TIlLRG~s~~~L~evK 634 (1832)
|++|..||++.+.+-....+.||+|+.+...++++ .+++.|. +|......||+|||++...|++++
T Consensus 318 rlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~-------------~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~E 384 (537)
T KOG0362|consen 318 RLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGD-------------TLVVVFRWESTGTRVATVVLRGATQSILDDAE 384 (537)
T ss_pred HHHHHcCCccchhccCCCCccccccceeeeeecCC-------------ceEEEEeeccCCCceeEEEEcccchhhHHHHH
Confidence 99999999999999999999999999999999876 2555555 555678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCeEEeCCCccCCCC
Q 000226 635 HVVQYGVFAAYHLALETSFLADEGASLPQL 664 (1832)
Q Consensus 635 r~l~dal~a~~~l~lE~~~l~GgGa~~~~~ 664 (1832)
|++++++++.+.+..++++++|.|+++.++
T Consensus 385 RAVddgV~tyK~l~~d~rLlpGagatEieL 414 (537)
T KOG0362|consen 385 RAVDDGVNTYKALCSDSRLLPGAGATEIEL 414 (537)
T ss_pred HHHHHhHHHhhhhccCCccccCCchhHHHH
Confidence 999999999999999999999999999864
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-27 Score=270.34 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=189.9
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCchhhHHHHHHHHHHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDRESWLEIITSLSWEA 420 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~~~w~~~l~~L~~eA 420 (1832)
-+|+++||||| .+++||+.++.++..++..|+||..|..||..+...++..+.+++-+.+
T Consensus 84 sqd~eIgdGtT---gVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e----------------- 143 (400)
T KOG0357|consen 84 SQDDEIGDGTT---GVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE----------------- 143 (400)
T ss_pred cchhhhccCCc---ccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-----------------
Confidence 45679999999 9999999999999999999999999999999999999988887752111
Q ss_pred HHhcCCCCCCCCCCCCCCcEEEEEecCCCccceeEEEeeeEeeecccCCCceeecCCeEEEecccccccccccChhhHHH
Q 000226 421 ATLLKPDMSKCGGMDPGEYVKVKCLACGRRSESMVVKGVVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVANHLSSVDT 500 (1832)
Q Consensus 421 ~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS~vi~GvVf~K~~a~k~M~~~i~nprILLl~~~Ley~r~~~~~~sl~~ 500 (1832)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEccccCCCCCCCCcee
Q 000226 501 LLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSQKLGYC 580 (1832)
Q Consensus 501 il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA~Iissld~L~~~~LG~C 580 (1832)
+..+++.|...|++|++|++++++.|.++|.+++..+|+||...+||-||.+||+.||+++.+|++.+||+|
T Consensus 144 --------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~a 215 (400)
T KOG0357|consen 144 --------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFA 215 (400)
T ss_pred --------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhcccc
Confidence 344566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeccccccCCCCcccceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCcc
Q 000226 581 DTFHVEKFLEEHGSAGQGGKKLSKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGAS 660 (1832)
Q Consensus 581 ~~f~v~~~~~e~~~~~~~~~k~~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~ 660 (1832)
+.++...|+.. .++++++|.|++.+..||.+||+|..+++|.||+++||||+++|++++.++|.|||++
T Consensus 216 glVrE~sfgtt-----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaa 284 (400)
T KOG0357|consen 216 GLVREISFGTT-----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA 284 (400)
T ss_pred ceEEEEecccc-----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchH
Confidence 99999999873 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 000226 661 LPQ 663 (1832)
Q Consensus 661 ~~~ 663 (1832)
+..
T Consensus 285 Eis 287 (400)
T KOG0357|consen 285 EIS 287 (400)
T ss_pred Hhh
Confidence 974
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.9e-19 Score=216.85 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=224.8
Q ss_pred cccCCcCCccccccceeechHHHHHhHhhhhhhchhhHHHHHHHHHHHHHHHHHHhCcCCCCCCCc---------hhhHH
Q 000226 341 DDEGGTGEWGYLRSSNSFGSGEYRNRDKSGEEHRKALKNVVEGHFRALVAQLLQVENLPVGDENDR---------ESWLE 411 (1832)
Q Consensus 341 ~~ddevGDGTT~~~s~vvLA~eLl~~~~~li~~g~~p~~i~~g~~~al~~qLl~~~~i~~~~~~~~---------~~w~~ 411 (1832)
..|+.+||||| ++++||.++..++...+..|.+|..|.+|...+.......+...+++..... .+.+.
T Consensus 93 ~tN~~agdGtt---tatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~ 169 (550)
T KOG0356|consen 93 NTNEEAGDGTT---TATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDK 169 (550)
T ss_pred hccCccccCcc---hHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcH
Confidence 55889999999 9999999999999999999999999999999999999999988887755332 36677
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCcEEEEEecCCCccce-eEEEeeeEeeecccC-------CCceeecCCeEEEec
Q 000226 412 IITSLSWEAATLLKPDMSKCGGMDPGEYVKVKCLACGRRSES-MVVKGVVCKKNVAHR-------RMTSKIDKPRFLILG 483 (1832)
Q Consensus 412 ~l~~L~~eA~~~V~~d~~~~~~mDi~~~VkIkki~GGs~~dS-~vi~GvVf~K~~a~k-------~M~~~i~nprILLl~ 483 (1832)
.+.+|+.+|+..|+++ +.|.|+. |.+..|. ++++|+-|++++.++ .+..+++||++||..
T Consensus 170 ~ig~li~~a~~kvG~~----------GVItv~~--gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~ 237 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGRK----------GVITVKD--GKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE 237 (550)
T ss_pred HHHHHHHHHHHHhCcC----------CeEEeec--CCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh
Confidence 7888999999999975 6677776 7777654 899999999999985 466778999998877
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeec-----------ChH
Q 000226 484 GALEYQRVANHLSSVDTLLQQEMDHLKMAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI-----------KRP 552 (1832)
Q Consensus 484 ~~Ley~r~~~~~~sl~~il~qE~e~L~~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nV-----------k~~ 552 (1832)
- . ++++..+ -..++.-.+.+.++|++.++|+..|+..|.-++..+...| +..
T Consensus 238 k------k---i~~v~~i--------vp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~ 300 (550)
T KOG0356|consen 238 K------K---ISSVQSI--------VPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKN 300 (550)
T ss_pred h------h---hhHHHHH--------hHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHH
Confidence 2 2 3333332 2335566778889999999999999999988886665555 778
Q ss_pred HHHHHHHHhCCEEcc------ccCCCCCCCCceeeEEEEEEeeccccccCCCCccc------------------------
Q 000226 553 LLERIARCTGAQIVP------SIDHLTSQKLGYCDTFHVEKFLEEHGSAGQGGKKL------------------------ 602 (1832)
Q Consensus 553 ~LerIAr~TGA~Iis------sld~L~~~~LG~C~~f~v~~~~~e~~~~~~~~~k~------------------------ 602 (1832)
.|.+||.+|||.++. +++.....+||+|+.+.+.+-.. .+....+.+.
T Consensus 301 ~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t--~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ek 378 (550)
T KOG0356|consen 301 LLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDT--MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEK 378 (550)
T ss_pred hhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcc--eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhH
Confidence 899999999999987 35566778999999999887211 1111111111
Q ss_pred -ceEEEEEEcCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCeEEeCCCccCCC
Q 000226 603 -SKTLMFVEGCPKPLGCTILLKGANGDNLKKAKHVVQYGVFAAYHLALETSFLADEGASLPQ 663 (1832)
Q Consensus 603 -~ktl~~fegc~~~~g~TIlLRG~s~~~L~evKr~l~dal~a~~~l~lE~~~l~GgGa~~~~ 663 (1832)
.+.+--|. ...++|.++|.++.|+++.|.+++||++|.++++.|| ++||||+++..
T Consensus 379 l~er~a~ls----~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~ 435 (550)
T KOG0356|consen 379 LNERLAKLS----GGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLR 435 (550)
T ss_pred HHHHHHHhc----CCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHH
Confidence 01111111 2467899999999999999999999999999999999 99999999863
No 52
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.55 E-value=1.2e-15 Score=143.13 Aligned_cols=68 Identities=35% Similarity=0.973 Sum_probs=47.2
Q ss_pred CCcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHh
Q 000226 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWE 102 (1832)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1832)
|.|+||.++..|+.|+++|++++||||||.||++||+.|+.+++.++... ....+++|||+.|+..++
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~----~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPS----SGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--G----GTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccc----cCCCCcCEECHHHHHHhc
Confidence 67999999999999999999999999999999999999999998887211 113689999999999874
No 53
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.35 E-value=4.2e-13 Score=163.65 Aligned_cols=77 Identities=29% Similarity=0.714 Sum_probs=59.6
Q ss_pred CCCCCcccCCCC-ccccccccccccc-----cccccccccCcEEecCCCCCeeeCCCCCCcCCC--CCCcccccccchHH
Q 000226 28 VSRDFWMPDQSC-RVCYECDSQFTVF-----NRRHHCRLCGLVFCAKCTTNSVPASFDESRTGR--EDSERIRVCNYCFR 99 (1832)
Q Consensus 28 ~~r~~Wvpd~~~-~~C~~C~~~Fs~~-----~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~--~~~~~vRVC~~C~~ 99 (1832)
+..|.|+||++. ..|+.|++.|+.+ .||||||+||++||+.||+++..+|.....++. ....++|||+.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 456899999985 7899999999754 699999999999999999998765443321111 22357899999998
Q ss_pred HHhhc
Q 000226 100 QWEQG 104 (1832)
Q Consensus 100 ~~~~~ 104 (1832)
+++..
T Consensus 528 q~EnL 532 (1374)
T PTZ00303 528 EYETV 532 (1374)
T ss_pred HHHhH
Confidence 87653
No 55
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.34 E-value=1.9e-13 Score=159.16 Aligned_cols=72 Identities=40% Similarity=0.905 Sum_probs=67.3
Q ss_pred CCCCCCCCcccCCCCcccccccc-ccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000226 25 PANVSRDFWMPDQSCRVCYECDS-QFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1832)
Q Consensus 25 p~~~~r~~Wvpd~~~~~C~~C~~-~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1832)
|.....+.|+||.+++.|+.|+. .|+++.||||||+||.|||..|+.++..+|... ..++|||+.||..+..
T Consensus 154 ~~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-------~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 154 PSNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-------TKPIRVCDICFEELEK 226 (288)
T ss_pred CCCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-------CCCceecHHHHHHHhc
Confidence 66778899999999999999999 999999999999999999999999998888776 6899999999999976
No 56
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.33 E-value=3.7e-13 Score=157.58 Aligned_cols=70 Identities=39% Similarity=0.897 Sum_probs=63.8
Q ss_pred CCCCCCCCcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCccccccc-----chHH
Q 000226 25 PANVSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCN-----YCFR 99 (1832)
Q Consensus 25 p~~~~r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~-----~C~~ 99 (1832)
.+.+++|-|+||..+..|+.|+.+|+.|+||||||+||+|||++|+-..+|+|..| -.+.+|||. .|+.
T Consensus 887 satlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~g------l~ka~rvcrpqsnldc~~ 960 (990)
T KOG1819|consen 887 SATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHG------LDKAPRVCRPQSNLDCLT 960 (990)
T ss_pred ccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccc------cccCceecCCccccccee
Confidence 34577799999999999999999999999999999999999999999999999988 357999999 7876
Q ss_pred H
Q 000226 100 Q 100 (1832)
Q Consensus 100 ~ 100 (1832)
.
T Consensus 961 r 961 (990)
T KOG1819|consen 961 R 961 (990)
T ss_pred e
Confidence 5
No 57
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.6e-12 Score=160.28 Aligned_cols=66 Identities=32% Similarity=0.835 Sum_probs=60.0
Q ss_pred CCCcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhc
Q 000226 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQG 104 (1832)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~ 104 (1832)
.+.|....+ |..|..+|++++||||||+||+|||..|+++..++|..| ..++||||+.||..+...
T Consensus 159 ~pdW~D~~~---C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~G------i~~~VRVCd~C~E~l~~~ 224 (634)
T KOG1818|consen 159 APDWIDSEE---CLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLG------IEKPVRVCDSCYELLTRA 224 (634)
T ss_pred Ccccccccc---cceeeeeeeeccccccccccchhhccCccccccCccccc------ccccceehhhhHHHhhhc
Confidence 478987654 899999999999999999999999999999999999988 568999999999998664
No 58
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.98 E-value=1.6e-10 Score=104.25 Aligned_cols=55 Identities=40% Similarity=1.025 Sum_probs=49.1
Q ss_pred CccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHH
Q 000226 39 CRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFR 99 (1832)
Q Consensus 39 ~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~ 99 (1832)
+..|..|++.|+++.||||||.||.+||..|+..++.+|... ..+++|||..||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~------~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMG------GGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCccc------CCCccEeChHHhC
Confidence 467999999999999999999999999999999998887632 2589999999985
No 59
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=98.79 E-value=5.7e-10 Score=132.06 Aligned_cols=72 Identities=35% Similarity=0.749 Sum_probs=53.7
Q ss_pred CcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCC------C-CCCcC----------CCCCCcccccc
Q 000226 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPAS------F-DESRT----------GREDSERIRVC 94 (1832)
Q Consensus 32 ~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p------~-~~~~~----------~~~~~~~vRVC 94 (1832)
.|+.|.++..|+.|..+|++++||||||.||+|.|.+|+..- +++ . ....+ -.....++|+|
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i-Sle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI-SLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhc-ChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 499999999999999999999999999999999999997641 100 0 00000 00123579999
Q ss_pred cchHHHHhhc
Q 000226 95 NYCFRQWEQG 104 (1832)
Q Consensus 95 ~~C~~~~~~~ 104 (1832)
..|...+-..
T Consensus 252 ~hCl~~L~~R 261 (505)
T KOG1842|consen 252 MHCLDNLFRR 261 (505)
T ss_pred HHHHHHHHHH
Confidence 9998776553
No 60
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=98.65 E-value=1.4e-08 Score=130.76 Aligned_cols=53 Identities=34% Similarity=0.851 Sum_probs=47.7
Q ss_pred CCCCCCcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCC
Q 000226 27 NVSRDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFD 79 (1832)
Q Consensus 27 ~~~r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~ 79 (1832)
+...|.|+||.++..|+.|..+|++.+||||||+||+|+|+-|+..+..+...
T Consensus 545 gkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl 597 (1287)
T KOG1841|consen 545 GKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL 597 (1287)
T ss_pred CCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc
Confidence 45568999999999999999999999999999999999999999987766543
No 61
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=2.1e-07 Score=109.85 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=58.3
Q ss_pred CCCCcccCCCCccccccccccc-cccccccccccCcEEecCCCCCe--eeCCCCCCcCCCCCCcccccccchHHHHh
Q 000226 29 SRDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVFCAKCTTNS--VPASFDESRTGREDSERIRVCNYCFRQWE 102 (1832)
Q Consensus 29 ~r~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~vfC~~Cs~~~--~~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1832)
..|.|.+++....|+.|+..|+ ++.||||||.||.+||..|+.-+ +|+|... ..+.|||+.|+..+.
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~-------d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAA-------DPLQRVLDSCAFNLE 219 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCccc-------CCHHHHHhhHhhccC
Confidence 4489999999999999999999 77999999999999999998774 5555444 579999999999884
No 62
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.02 E-value=1.7e-06 Score=100.72 Aligned_cols=71 Identities=30% Similarity=0.672 Sum_probs=58.1
Q ss_pred CCCCCCCCcccCCCCccccccccccc-----------cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCccccc
Q 000226 25 PANVSRDFWMPDQSCRVCYECDSQFT-----------VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRV 93 (1832)
Q Consensus 25 p~~~~r~~Wvpd~~~~~C~~C~~~Fs-----------~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRV 93 (1832)
-....-|.|..+.. |..|..+|. +..|.||||.||..||..|++++...|.-| ..-.+|+
T Consensus 271 ~~r~etpewl~s~~---cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg------~e~~vR~ 341 (404)
T KOG1409|consen 271 VKRVETPEWLDSDS---CQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG------FEFSVRV 341 (404)
T ss_pred ceeecCccccccch---hhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc------ceeEEEE
Confidence 33455689998875 788889883 334899999999999999999998888777 4679999
Q ss_pred ccchHHHHhhc
Q 000226 94 CNYCFRQWEQG 104 (1832)
Q Consensus 94 C~~C~~~~~~~ 104 (1832)
|+.||..+.-.
T Consensus 342 ~~~c~~~i~~~ 352 (404)
T KOG1409|consen 342 CDSCYPTIKDE 352 (404)
T ss_pred ecccchhhhcC
Confidence 99999987544
No 63
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=97.52 E-value=5.7e-05 Score=93.55 Aligned_cols=61 Identities=31% Similarity=0.626 Sum_probs=52.1
Q ss_pred CCcccCCCCccccccccccc-cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHH
Q 000226 31 DFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1832)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1832)
+.| +.+++.|..|+.+|+ ...|||||+.||.|+|++|+.....+...+ ....|||..||..
T Consensus 409 ~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~-------s~ssrv~~~~~~~ 470 (623)
T KOG4424|consen 409 PRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDN-------SRSSRVCMDRYLT 470 (623)
T ss_pred ccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccc-------cchhhhhhhhccC
Confidence 466 888999999999998 778999999999999999998876555433 5789999999865
No 64
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.17 E-value=4.3e-05 Score=93.51 Aligned_cols=67 Identities=30% Similarity=0.600 Sum_probs=53.3
Q ss_pred CCCCcccCC----CCccccc-cccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHH
Q 000226 29 SRDFWMPDQ----SCRVCYE-CDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQW 101 (1832)
Q Consensus 29 ~r~~Wvpd~----~~~~C~~-C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~ 101 (1832)
.+.+|+||. .-.-|+. |+..|..++||||||.||...|+.|...+.....-+ +.-+.++|+.|+...
T Consensus 312 al~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~g------se~~Adg~Dq~psvs 383 (1141)
T KOG1811|consen 312 ALHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCG------SENPADGCDQCPSVS 383 (1141)
T ss_pred hhhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhccc------ccCcccccccccchh
Confidence 345899998 3356775 677899999999999999999999998876554433 356899999998653
No 65
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=94.13 E-value=0.042 Score=75.34 Aligned_cols=99 Identities=9% Similarity=-0.193 Sum_probs=78.1
Q ss_pred CCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEeccchhhcccHHHHHh
Q 000226 921 CRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVVMSDAAWGLSFGKFLE 1000 (1832)
Q Consensus 921 C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~mS~~tw~lSFGKfLE 1000 (1832)
|..|+.+|..|++.+.|..- . ..-+.. .+.++|+.+ .|.||++|..|+. -+-+ +|...+|++.+|+++|
T Consensus 659 ~~~~~~~~~~~lv~~~es~~-~-~~~~s~-~~~~~~l~e-~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~~e 727 (1598)
T KOG0230|consen 659 SSYSKGPKQNGLVPAHESVL-N-DLHEST-LSILSKLPE-TRSGTHEGNEDKG------PGLE-PELANNQNIQRPEETE 727 (1598)
T ss_pred hhhcCchhhccccccccccc-c-cccccc-ccccccccc-hhcccchhccccC------cccc-ccccccccccchhhhh
Confidence 44689999999999999877 2 222222 234666654 8999999999996 3556 8999999999999999
Q ss_pred hhccCccccCCcCCCCCccccceeeccccCCeE
Q 000226 1001 LSFSNHAAASRVANCGHSLHRDCLRFYGFGQMV 1033 (1832)
Q Consensus 1001 L~F~~~~~~~r~~~C~H~l~rDhlryFg~~~~v 1033 (1832)
-. +...+.+...|.|.+---|.|+| +.++|
T Consensus 728 ~~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 728 EQ--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred hh--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 98 44556677899999999999999 88876
No 66
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=94.02 E-value=0.03 Score=58.63 Aligned_cols=52 Identities=33% Similarity=0.673 Sum_probs=40.7
Q ss_pred Cccccccccccccc-cccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000226 39 CRVCYECDSQFTVF-NRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1832)
Q Consensus 39 ~~~C~~C~~~Fs~~-~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1832)
...|..|..+|+++ ++.+-|..|+.-||.+|... . ...+..+|..|+..-.-
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~----------~~~~~WlC~vC~k~rel 106 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---S----------KKEPIWLCKVCQKQREL 106 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---T----------SSSCCEEEHHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc---C----------CCCCCEEChhhHHHHHH
Confidence 35899999999955 79999999999999999755 1 14678999999986543
No 67
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=88.03 E-value=0.12 Score=61.73 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=52.7
Q ss_pred CCcccCCCCccccccccccccccccccccccCcEEecCCCC-CeeeCCCCCCcCCCCCCcccccccchHHH
Q 000226 31 DFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTT-NSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1832)
Q Consensus 31 ~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~-~~~~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1832)
..|+-+.+...|..|...|.++.|.|||+.||++||..|+- +....+ .............+.|..|...
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~-~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKK-LQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcc-cccccccccccchhhcccccCH
Confidence 56999999999999999999999999999999999999987 221111 1111122345678889998776
No 68
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=84.20 E-value=0.84 Score=61.63 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=45.0
Q ss_pred CCCcccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000226 30 RDFWMPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1832)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1832)
++.|.+|.....|..|.+.|..++|||||| |.++ +-.. .....|+|..|...++.
T Consensus 648 ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~-------s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 648 KSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYS-------SRKEARPCNITHSVLRN 702 (1287)
T ss_pred cceeccCCcCCCceecccceeeeccccccc--cccc----------cccc-------ccccCCCCcccCccchh
Confidence 468999999999999999999999999999 7776 1111 24678899999887665
No 69
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.25 E-value=0.14 Score=61.63 Aligned_cols=68 Identities=21% Similarity=0.486 Sum_probs=55.3
Q ss_pred CcccCCCCccccccccccccccccccccc--cCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhhcccC
Q 000226 32 FWMPDQSCRVCYECDSQFTVFNRRHHCRL--CGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQGIGA 107 (1832)
Q Consensus 32 ~Wvpd~~~~~C~~C~~~Fs~~~RkHHCR~--CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~~~~~ 107 (1832)
.|.-+.++..|..|..+|..++-+-||-+ ||++||-.|+.-.+| ... +.++..||..|.....+..-.
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Katvp--~l~------~e~~akv~rlq~eL~~seq~~ 530 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKATVP--SLP------NERPAKVCRLQHELLNSEQKP 530 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhhcc--ccc------ccchHHHHHHHHHHhhhccCC
Confidence 47777788899999999999999999988 999999999866543 322 358999999999987765433
No 70
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=62.93 E-value=3.5 Score=45.37 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhhHHHH
Q 000226 1151 LRRQILFHSCVWDQRLI 1167 (1832)
Q Consensus 1151 l~r~l~~~~~~Wd~rl~ 1167 (1832)
+.+.|......|-.||.
T Consensus 112 VE~~L~~~~~~ay~rfa 128 (154)
T PRK00464 112 VMEELKKLDEVAYVRFA 128 (154)
T ss_pred HHHHHHhcCCEEEEEhh
Confidence 44444555555655554
No 71
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=56.86 E-value=2.4 Score=37.96 Aligned_cols=29 Identities=31% Similarity=0.843 Sum_probs=19.2
Q ss_pred cccccccccccc------cccccccccCcEEecCC
Q 000226 41 VCYECDSQFTVF------NRRHHCRLCGLVFCAKC 69 (1832)
Q Consensus 41 ~C~~C~~~Fs~~------~RkHHCR~CG~vfC~~C 69 (1832)
.|+.|.++|... ..+..|..|+.+||..|
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 489999999865 36899999999999999
No 72
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=55.93 E-value=7 Score=40.54 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=22.7
Q ss_pred CCCcccCCCCcccccccccccccc-ccccccccCcEE
Q 000226 30 RDFWMPDQSCRVCYECDSQFTVFN-RRHHCRLCGLVF 65 (1832)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs~~~-RkHHCR~CG~vf 65 (1832)
++.|--. ..|+.|+++|==++ +--+|..||..|
T Consensus 3 kpelGtK---R~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 3 KPELGTK---RTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccccCCc---ccCCCCcchhccCCCCCccCCCCCCcc
Confidence 4556543 46999999997444 455688888765
No 73
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=54.65 E-value=3.4 Score=46.33 Aligned_cols=35 Identities=34% Similarity=0.731 Sum_probs=27.0
Q ss_pred cCCCCccccccccccccc---c---------ccccccccCcEEecCC
Q 000226 35 PDQSCRVCYECDSQFTVF---N---------RRHHCRLCGLVFCAKC 69 (1832)
Q Consensus 35 pd~~~~~C~~C~~~Fs~~---~---------RkHHCR~CG~vfC~~C 69 (1832)
+|...-.|.+|++.|++- + +||-|+.||..|=..-
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtf 159 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTF 159 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchh
Confidence 456677899999999843 3 5899999999885543
No 74
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=54.46 E-value=7.5 Score=41.06 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCcccCCCCccccccccccc-cccccccccccCcEE
Q 000226 30 RDFWMPDQSCRVCYECDSQFT-VFNRRHHCRLCGLVF 65 (1832)
Q Consensus 30 r~~Wvpd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~vf 65 (1832)
++.|--. ..|+.|+++|= +.++-.+|..||.+|
T Consensus 3 k~elGtK---r~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 3 KPDLGTK---RICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred chhhCcc---ccCCCcCccccccCCCCccCCCcCCcc
Confidence 4556443 46999999997 556677888888865
No 75
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.37 E-value=11 Score=39.20 Aligned_cols=33 Identities=33% Similarity=0.922 Sum_probs=26.7
Q ss_pred CCccccccccccccc----------cccccccccCcEEecCCC
Q 000226 38 SCRVCYECDSQFTVF----------NRRHHCRLCGLVFCAKCT 70 (1832)
Q Consensus 38 ~~~~C~~C~~~Fs~~----------~RkHHCR~CG~vfC~~Cs 70 (1832)
....|+.|..+|.-. ..|.-|..|+.+||-.|=
T Consensus 54 ~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 96 (112)
T TIGR00622 54 GSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD 96 (112)
T ss_pred CCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc
Confidence 345699999999732 346789999999999994
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=3.2 Score=48.90 Aligned_cols=52 Identities=29% Similarity=0.676 Sum_probs=43.6
Q ss_pred ccCCCCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHH
Q 000226 34 MPDQSCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQ 100 (1832)
Q Consensus 34 vpd~~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~ 100 (1832)
-+..+..+|-.|+..|..+.+||-|-.|-+-||..|| ++ ....|.|..|...
T Consensus 39 s~~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs--~v-------------~~~lr~c~~c~r~ 90 (350)
T KOG4275|consen 39 SSSSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCS--RV-------------SISLRTCTSCRRV 90 (350)
T ss_pred CcccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHH--Hh-------------cccchhhhHHHHH
Confidence 3455567899999999999999999999999999998 22 2467889999765
No 77
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=47.38 E-value=2.7 Score=55.67 Aligned_cols=42 Identities=31% Similarity=0.776 Sum_probs=31.2
Q ss_pred CCccccccccccc--cccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchH
Q 000226 38 SCRVCYECDSQFT--VFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCF 98 (1832)
Q Consensus 38 ~~~~C~~C~~~Fs--~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~ 98 (1832)
+.-.|..|...+- ++ -.||.+||..|...+. ..+.|-|..|-
T Consensus 642 ~~LkCs~Cn~R~Kd~vI------~kC~H~FC~~Cvq~r~-------------etRqRKCP~Cn 685 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVI------TKCGHVFCEECVQTRY-------------ETRQRKCPKCN 685 (698)
T ss_pred hceeCCCccCchhhHHH------HhcchHHHHHHHHHHH-------------HHhcCCCCCCC
Confidence 4467999987553 22 3699999999986653 36788999994
No 78
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=45.81 E-value=11 Score=31.49 Aligned_cols=25 Identities=32% Similarity=0.958 Sum_probs=18.1
Q ss_pred ccccccccccccc-------ccccccccCcEE
Q 000226 41 VCYECDSQFTVFN-------RRHHCRLCGLVF 65 (1832)
Q Consensus 41 ~C~~C~~~Fs~~~-------RkHHCR~CG~vf 65 (1832)
.|..|++.|.+-. ++--|..||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 5888998886432 567777777765
No 79
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=45.69 E-value=11 Score=31.56 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=19.2
Q ss_pred cccccccccccccc-------ccccccccCcEE
Q 000226 40 RVCYECDSQFTVFN-------RRHHCRLCGLVF 65 (1832)
Q Consensus 40 ~~C~~C~~~Fs~~~-------RkHHCR~CG~vf 65 (1832)
..|+.|++.|.+-. ++..|..||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 46999999997443 577777777776
No 80
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=45.27 E-value=9.5 Score=40.51 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=18.5
Q ss_pred cCccccceeEeeecccceeeeehhhhhhc
Q 000226 1726 IDVMDYSLLVGIDEEKHELVLGIIDFMRQ 1754 (1832)
Q Consensus 1726 ~nvMDYSLLvGi~~~~~~l~~GIID~L~~ 1754 (1832)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 4588899999976 999999954
No 81
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=44.15 E-value=11 Score=40.17 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=18.6
Q ss_pred cCccccceeEeeecccceeeeehhhhhhc
Q 000226 1726 IDVMDYSLLVGIDEEKHELVLGIIDFMRQ 1754 (1832)
Q Consensus 1726 ~nvMDYSLLvGi~~~~~~l~~GIID~L~~ 1754 (1832)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 4588899999976 999999954
No 82
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=42.54 E-value=22 Score=35.24 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=30.6
Q ss_pred hccccCCCCCCCCcccceeeeeecCcEEEEEEEecccccCCCCCCCcEEEEeccCCCCCCCCCCCCcceEec
Q 000226 915 FDQSYRCRSCDMPSEAHVHCYTHRQGSLTISVKKLSEILLPGEREGKIWMWHRCLRCPRTNGFPPATRRVVM 986 (1832)
Q Consensus 915 ~~~~~~C~sC~~p~~~H~r~yvH~~g~ltI~v~~l~~~~lpge~~~~I~mWs~C~~C~~~~g~~~~T~~v~m 986 (1832)
..+.|.||.|+.+- |++.. -.|| .|.+|+....-..-||.+++
T Consensus 32 ~~~~~~Cp~C~~~~-----------------VkR~a---------~GIW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRTT-----------------VKRIA---------TGIW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCcc-----------------eeeec---------cCeE---EcCCCCCeeccccccccchH
Confidence 46789999999984 56652 1488 59999987555556765554
No 83
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=41.70 E-value=59 Score=36.24 Aligned_cols=52 Identities=31% Similarity=0.348 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeE-EeecC--h----HHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISL-VLNIK--R----PLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~-v~nVk--~----~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||..........+.|.+.||.+ +.... . ..++.|++.+|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 567889999999997665565778899999965 44332 1 3467788887753
No 84
>PLN02667 inositol polyphosphate multikinase
Probab=41.43 E-value=37 Score=41.26 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=44.8
Q ss_pred ecCCcEEEeccC-----HHHHHHHHHHhHH--HHHHHHhhcCCCCCceeeeeeeEEEEeeeccCCCceEEEEEeeeeccc
Q 000226 1586 TLDDRFIIKQVP-----KTELESFIKFGPA--YFKYLSESISTGSPTCLAKILGIYQVASKHFKGGKESKMDLLVMENLL 1658 (1832)
Q Consensus 1586 T~D~rfiiKtis-----~~E~~~f~~~~p~--Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~~~g~~~k~~~iVMeNlf 1658 (1832)
+.|+..|+|-+. ..|+++...+... .-.. ..-+++++||...+... .|+ .+||||||-
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~~~~~~~~~--------L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFSSDTRVPDH--------IRRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHhccccchHH--------HHhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 346778899998 6888776654310 0011 12578999999876442 233 479999999
Q ss_pred CCCccceeeeCC
Q 000226 1659 FRRNITRLYDLK 1670 (1832)
Q Consensus 1659 ~~~~i~~~yDLK 1670 (1832)
++..--.+=|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 875444455555
No 85
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=40.83 E-value=71 Score=31.42 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHH
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIAR 559 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr 559 (1832)
.+.|...++++||| +.|...+...|.++||.++.......=+.|..
T Consensus 46 ~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 46 AKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp HHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred HHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 34566689999998 55899999999999999999855544444443
No 86
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.74 E-value=3.8 Score=45.44 Aligned_cols=49 Identities=20% Similarity=0.511 Sum_probs=33.2
Q ss_pred CCccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHh
Q 000226 38 SCRVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWE 102 (1832)
Q Consensus 38 ~~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~ 102 (1832)
..-.|.+|-..|+-- -----+||.|||..|....+ +..++|..|..++.
T Consensus 130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~al--------------k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDAL--------------KNTNKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecchhhc--cccccccchhHHHHHHHHHH--------------HhCCCCCCcccccc
Confidence 346788888877511 11335799999999965432 46778999987543
No 87
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=39.17 E-value=16 Score=31.06 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=19.7
Q ss_pred ccccccccccccccccccccCcEEecCC
Q 000226 42 CYECDSQFTVFNRRHHCRLCGLVFCAKC 69 (1832)
Q Consensus 42 C~~C~~~Fs~~~RkHHCR~CG~vfC~~C 69 (1832)
|..|++.-.++ ...|+.||.+||...
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccccc--CeECCccCCcccccc
Confidence 66787755444 578999999998865
No 88
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=37.44 E-value=53 Score=38.52 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=27.9
Q ss_pred cccCCCCccccccccccccc-------cccccccccCcEEecC
Q 000226 33 WMPDQSCRVCYECDSQFTVF-------NRRHHCRLCGLVFCAK 68 (1832)
Q Consensus 33 Wvpd~~~~~C~~C~~~Fs~~-------~RkHHCR~CG~vfC~~ 68 (1832)
|-.-.++..|..|++.|... .-..||..||..|=+.
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G~ 168 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRGF 168 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccchhh
Confidence 44567889999999998643 2478999999998443
No 89
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=37.18 E-value=67 Score=40.29 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC---h----HHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK---R----PLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk---~----~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||+...-.....+.|.+.||.++.--. . +.++.|++.+|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 67899999999999765566678889999999865421 1 3456777777753
No 90
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=37.03 E-value=60 Score=39.13 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEee-c-----ChHHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLN-I-----KRPLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~n-V-----k~~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||+....+....+.|.+.||.++.- . -...++.|++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 568999999999998888888889999999987632 2 123478888888864
No 91
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=36.36 E-value=82 Score=36.66 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=39.1
Q ss_pred HHHHHhcCCcEEEEecCccHH-HHHHHHHcCCeEEeec--C----hHHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRY-AQDYLLAKDISLVLNI--K----RPLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~-Al~~L~~~gI~~v~nV--k----~~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||........ ..+.|.+.||.++..- . ...++.||..+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 568999999999997655454 4888999999876532 1 33478888888875
No 92
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.19 E-value=1.3e+02 Score=32.02 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=55.2
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHhhcc-------------c--ccCc-cCCCCcce----eEEEecCCcEEE-------
Q 000226 1541 TCYFAKRFDALRRMCCHSELDFIRSLSR-------------C--KKWG-AQGGKSNV----FFAKTLDDRFII------- 1593 (1832)
Q Consensus 1541 ~~y~p~~F~~LR~~~~~~~~~f~~Sl~~-------------~--~~~~-~~gGKSgs----~F~~T~D~rfii------- 1593 (1832)
.+|-...|..+-+..++++.++...+.. + .+|. ...||||. .||+..+.-|.|
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 3566789999999999999887665542 1 2332 35789983 355554444444
Q ss_pred -eccCHHHHHHHHHHhHHHHHHHHhh
Q 000226 1594 -KQVPKTELESFIKFGPAYFKYLSES 1618 (1832)
Q Consensus 1594 -Ktis~~E~~~f~~~~p~Yf~y~~~~ 1618 (1832)
-.|+..|++.|.+++..|+.+-.+-
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~ 107 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQ 107 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 2478999999999999999986653
No 93
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.78 E-value=11 Score=48.16 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=37.6
Q ss_pred ccccccccccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHHhh
Q 000226 40 RVCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQWEQ 103 (1832)
Q Consensus 40 ~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~~~ 103 (1832)
..|++|-.++.+-.|- .||.+||..|.-+.+-.+ .....+-|.-|+..+..
T Consensus 187 ~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---------~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 187 MQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---------AIKGPCSCPICRSTITL 237 (513)
T ss_pred CcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---------cccCCccCCchhhhccc
Confidence 5799999888754442 399999999976654433 14677889999987644
No 94
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=34.43 E-value=27 Score=31.89 Aligned_cols=34 Identities=29% Similarity=0.631 Sum_probs=20.9
Q ss_pred Cccccc--ccccccccccc----ccccccCcEEecCCCCC
Q 000226 39 CRVCYE--CDSQFTVFNRR----HHCRLCGLVFCAKCTTN 72 (1832)
Q Consensus 39 ~~~C~~--C~~~Fs~~~Rk----HHCR~CG~vfC~~Cs~~ 72 (1832)
...|+. |...|..-... -.|..||..||..|-..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 357866 99988754432 67999999999999643
No 95
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.59 E-value=94 Score=31.14 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC
Q 000226 512 AVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 550 (1832)
Q Consensus 512 ~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk 550 (1832)
+++.|...++++|+|. ++...++..|.++||.++.-..
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 4556677899999995 6999999999999999997766
No 96
>PHA02768 hypothetical protein; Provisional
Probab=29.85 E-value=23 Score=32.43 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=17.1
Q ss_pred ccccccccccccc------cccc----ccccCcEE
Q 000226 41 VCYECDSQFTVFN------RRHH----CRLCGLVF 65 (1832)
Q Consensus 41 ~C~~C~~~Fs~~~------RkHH----CR~CG~vf 65 (1832)
.|..|++.|+... |+|+ |-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 6999999997332 4444 66677665
No 97
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=29.83 E-value=23 Score=33.68 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=36.0
Q ss_pred cccccccccccccccccccccCcEEecCCCCCe-eeCCCCCCcCCC---CCCcccccccchHHHH
Q 000226 41 VCYECDSQFTVFNRRHHCRLCGLVFCAKCTTNS-VPASFDESRTGR---EDSERIRVCNYCFRQW 101 (1832)
Q Consensus 41 ~C~~C~~~Fs~~~RkHHCR~CG~vfC~~Cs~~~-~~~p~~~~~~~~---~~~~~vRVC~~C~~~~ 101 (1832)
.|+.|...=.-..----|..||..+|...+... +++-..+.+.+. ...-|.-+|..|+..+
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e~~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~ 66 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKREEIPVWEGGYPFPSKKLKKPLPRILCPECHAAL 66 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhhhheeeeccCCCCccccccCCCCeeecHHHHHHh
Confidence 466665533333334568999999999998762 333222211111 1234666899998765
No 98
>PRK00420 hypothetical protein; Validated
Probab=28.90 E-value=32 Score=36.05 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=15.2
Q ss_pred cccccccccccc-ccccccccccCcE
Q 000226 40 RVCYECDSQFTV-FNRRHHCRLCGLV 64 (1832)
Q Consensus 40 ~~C~~C~~~Fs~-~~RkHHCR~CG~v 64 (1832)
..|+.|+.+|.- -..+.-|..||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 579999987753 3444444444443
No 99
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=1.6e+02 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCC
Q 000226 512 AVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGA 563 (1832)
Q Consensus 512 ~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA 563 (1832)
+.+.|+..++++||+ ..|.+-|..+|.++||.+..-....+=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 356788999999998 679999999999999999988775555555544443
No 100
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.73 E-value=1.1e+02 Score=35.89 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeec----ChHHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNI----KRPLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nV----k~~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||+...... ..+.|.+.|.+++... -...++.|++.+|..
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~~ 113 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNKE 113 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCcH
Confidence 56899999999999877655 6677888886665443 224567777777653
No 101
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=27.67 E-value=24 Score=42.08 Aligned_cols=38 Identities=26% Similarity=0.731 Sum_probs=31.5
Q ss_pred cccCCCCccccccccccc----------cccccccccccCcEEecCCC
Q 000226 33 WMPDQSCRVCYECDSQFT----------VFNRRHHCRLCGLVFCAKCT 70 (1832)
Q Consensus 33 Wvpd~~~~~C~~C~~~Fs----------~~~RkHHCR~CG~vfC~~Cs 70 (1832)
|-.+-..+.|+.|+.+|- ....|..|..|-.-||..|-
T Consensus 356 ~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCd 403 (421)
T COG5151 356 EGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCD 403 (421)
T ss_pred CCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhH
Confidence 666666788999999883 33579999999999999994
No 102
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=26.22 E-value=1.6e+02 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHHHhcCCcEEEEecCc-cHHHHHHHHHcCCeEEeecC-------hHHHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSV-SRYAQDYLLAKDISLVLNIK-------RPLLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~V-s~~Al~~L~~~gI~~v~nVk-------~~~LerIAr~TGA~ 564 (1832)
+++|++++|+|||..... .......+.+.+|.++.--. ...++.||.++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 357889999999999998 77778888999999885443 24578888888865
No 103
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.11 E-value=32 Score=26.73 Aligned_cols=23 Identities=30% Similarity=0.798 Sum_probs=13.3
Q ss_pred cccccccccccccccccccccCcEE
Q 000226 41 VCYECDSQFTVFNRRHHCRLCGLVF 65 (1832)
Q Consensus 41 ~C~~C~~~Fs~~~RkHHCR~CG~vf 65 (1832)
.|+.|+..-....+ -|.+||..|
T Consensus 2 ~CP~C~~~V~~~~~--~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAK--FCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcC--cCCCCCCCC
Confidence 46777765543332 366777655
No 104
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=25.56 E-value=1.4e+02 Score=29.67 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=31.8
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK 550 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk 550 (1832)
...+...++++||+.+ |...++..|.++||.++.-..
T Consensus 54 ~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 4456678999999975 999999999999999997766
No 105
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=25.35 E-value=39 Score=29.51 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=18.8
Q ss_pred ccccccccccccccc--cccccccCcEE
Q 000226 40 RVCYECDSQFTVFNR--RHHCRLCGLVF 65 (1832)
Q Consensus 40 ~~C~~C~~~Fs~~~R--kHHCR~CG~vf 65 (1832)
-.|..|+..|.+..+ ..+|..||.-+
T Consensus 4 y~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 4 YKCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred EECCCCCCEEEECCCCCceECCCCCCeE
Confidence 368999998876544 57888887643
No 106
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.82 E-value=28 Score=36.86 Aligned_cols=51 Identities=31% Similarity=0.733 Sum_probs=36.1
Q ss_pred cccccccc-ccccccccccccccCcEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHH
Q 000226 40 RVCYECDS-QFTVFNRRHHCRLCGLVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQW 101 (1832)
Q Consensus 40 ~~C~~C~~-~Fs~~~RkHHCR~CG~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~ 101 (1832)
..|.+|.+ +|.- .=-|.|-.|.--||++|-.+ +.+. +++...||+.|-..-
T Consensus 66 atC~IC~KTKFAD-G~GH~C~YCq~r~CARCGGr-v~lr---------sNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 66 ATCGICHKTKFAD-GCGHNCSYCQTRFCARCGGR-VSLR---------SNKVMWVCNLCRKQQ 117 (169)
T ss_pred cchhhhhhccccc-ccCcccchhhhhHHHhcCCe-eeec---------cCceEEeccCCcHHH
Confidence 46999976 4642 23499999999999999644 2221 246788999996653
No 107
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.55 E-value=1.8e+02 Score=36.02 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecChHHHHHHHHHhCCEEcc
Q 000226 511 MAVTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIKRPLLERIARCTGAQIVP 567 (1832)
Q Consensus 511 ~~V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk~~~LerIAr~TGA~Iis 567 (1832)
.+++.|+..+|.+|++..+.... .+.|.++||.++..|..-.+-+.+.-.|++++-
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEE
Confidence 45777888999999999888776 478999999999999776666777778877663
No 108
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=23.82 E-value=47 Score=36.58 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=28.7
Q ss_pred EEEcCHHH---HHHHHHHcCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEec
Q 000226 1540 VTCYFAKR---FDALRRMCCHSELDFIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQ 1595 (1832)
Q Consensus 1540 ~~~y~p~~---F~~LR~~~~~~~~~f~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiKt 1595 (1832)
++-|||.- =..|.....+.|-+=+-|+ .-..|+-+++||+|.|+||||=-
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~------GDt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISM------GDTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEE------EETT--EEEEEEETTTTEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeee------cCCCCceEEEEEeccCceEEEEE
Confidence 56677632 2256666555544333333 34679999999999999999853
No 109
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=38 Score=37.42 Aligned_cols=23 Identities=30% Similarity=0.771 Sum_probs=16.7
Q ss_pred ccccccccccccccCc---EEecCCC
Q 000226 48 QFTVFNRRHHCRLCGL---VFCAKCT 70 (1832)
Q Consensus 48 ~Fs~~~RkHHCR~CG~---vfC~~Cs 70 (1832)
+|.....||.|+.||. .||-.|.
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~ 33 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCR 33 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeec
Confidence 4555667888888886 4888885
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.35 E-value=54 Score=30.87 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=22.3
Q ss_pred CCcccccccccccc--ccccccccccCcEE
Q 000226 38 SCRVCYECDSQFTV--FNRRHHCRLCGLVF 65 (1832)
Q Consensus 38 ~~~~C~~C~~~Fs~--~~RkHHCR~CG~vf 65 (1832)
..+.|+.|+..-.- ..|.++|..||...
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEE
Confidence 45679999887654 67899999999874
No 111
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=23.10 E-value=36 Score=38.19 Aligned_cols=28 Identities=29% Similarity=0.917 Sum_probs=23.2
Q ss_pred CccccccccccccccccccccccCcEEecCC
Q 000226 39 CRVCYECDSQFTVFNRRHHCRLCGLVFCAKC 69 (1832)
Q Consensus 39 ~~~C~~C~~~Fs~~~RkHHCR~CG~vfC~~C 69 (1832)
...|..|.+.-.+.. .||| ||.+||+..
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 356999998888877 8998 899999854
No 112
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=22.69 E-value=1.7e+02 Score=34.29 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEEecCccHHHHHHHHHcCCeEEeecC--hH----HHHHHHHHhCCE
Q 000226 513 VTKIDAHHPNVLLVEKSVSRYAQDYLLAKDISLVLNIK--RP----LLERIARCTGAQ 564 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~Vs~~Al~~L~~~gI~~v~nVk--~~----~LerIAr~TGA~ 564 (1832)
+++|++++|+|||+.........+.|.+.+..++.... .. .++.|++.+|..
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~~ 115 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGKE 115 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCcH
Confidence 55888999999999888776666777776666555543 22 467778877754
No 113
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.10 E-value=48 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=9.5
Q ss_pred ccccccccccccc
Q 000226 41 VCYECDSQFTVFN 53 (1832)
Q Consensus 41 ~C~~C~~~Fs~~~ 53 (1832)
.|+.|+..|.+-.
T Consensus 4 ~CP~C~~~~~v~~ 16 (38)
T TIGR02098 4 QCPNCKTSFRVVD 16 (38)
T ss_pred ECCCCCCEEEeCH
Confidence 5888888886553
No 114
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.66 E-value=63 Score=29.47 Aligned_cols=35 Identities=29% Similarity=0.760 Sum_probs=25.7
Q ss_pred CCcccc--cccccccc----ccccccccccCcEEecCCCCC
Q 000226 38 SCRVCY--ECDSQFTV----FNRRHHCRLCGLVFCAKCTTN 72 (1832)
Q Consensus 38 ~~~~C~--~C~~~Fs~----~~RkHHCR~CG~vfC~~Cs~~ 72 (1832)
....|+ .|...... ...+-.|..||..||..|...
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 344577 77665543 456888999999999999644
No 115
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.33 E-value=75 Score=39.03 Aligned_cols=61 Identities=23% Similarity=0.441 Sum_probs=36.8
Q ss_pred Ccccccccccc--cc-------ccccccccccC------cEEecCCCCCeeeCCCCCCcCCCCCCcccccccchHHHH
Q 000226 39 CRVCYECDSQF--TV-------FNRRHHCRLCG------LVFCAKCTTNSVPASFDESRTGREDSERIRVCNYCFRQW 101 (1832)
Q Consensus 39 ~~~C~~C~~~F--s~-------~~RkHHCR~CG------~vfC~~Cs~~~~~~p~~~~~~~~~~~~~vRVC~~C~~~~ 101 (1832)
...|++|+..= ++ ..|.-||-.|| ++-|..|-..+ .+..... .+.....++-+|..|..=+
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~-~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSG-KLHYWSL-DSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeeee-cCCCcceEeeecccccccc
Confidence 45799999862 32 34888999998 56888887642 1111100 0001135677899996543
No 116
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=20.97 E-value=1.7e+02 Score=34.73 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEEecC-ccHHHHHHHHHcCCeEEeec--Ch----HHHHHHHHHhCC
Q 000226 513 VTKIDAHHPNVLLVEKS-VSRYAQDYLLAKDISLVLNI--KR----PLLERIARCTGA 563 (1832)
Q Consensus 513 V~rI~~~~pnVVlvek~-Vs~~Al~~L~~~gI~~v~nV--k~----~~LerIAr~TGA 563 (1832)
+++|++++|+|||+..+ -.....+.|.+.||.++.-- .. ..++.|++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 56889999999998654 34556688999999887532 11 235566666654
No 117
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.42 E-value=68 Score=28.87 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=19.6
Q ss_pred Cccccccccccc-cccccccccccCcEEe
Q 000226 39 CRVCYECDSQFT-VFNRRHHCRLCGLVFC 66 (1832)
Q Consensus 39 ~~~C~~C~~~Fs-~~~RkHHCR~CG~vfC 66 (1832)
...|+.|+..|- .-..+.+|..||..+.
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~~ 48 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTEF 48 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEEe
Confidence 357999988543 3346888999987653
Done!